Query 018858
Match_columns 349
No_of_seqs 516 out of 1296
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 04:37:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4.4E-52 9.6E-57 319.0 26.6 324 6-347 106-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-47 2.6E-52 298.0 22.4 280 13-347 173-458 (459)
3 KOG0315 G-protein beta subunit 100.0 5.5E-45 1.2E-49 264.7 27.4 270 28-349 10-288 (311)
4 KOG0286 G-protein beta subunit 100.0 4.6E-43 1E-47 260.4 29.9 290 5-347 45-343 (343)
5 KOG0282 mRNA splicing factor [ 100.0 3.3E-45 7.2E-50 289.1 17.6 289 6-347 205-503 (503)
6 KOG0279 G protein beta subunit 100.0 8.4E-43 1.8E-47 257.3 27.6 257 1-349 1-262 (315)
7 KOG0279 G protein beta subunit 100.0 4E-42 8.6E-47 253.8 27.8 260 4-349 52-313 (315)
8 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-43 3.6E-48 275.0 18.2 247 4-295 206-458 (459)
9 KOG0263 Transcription initiati 100.0 5.4E-42 1.2E-46 286.2 22.7 245 10-348 373-648 (707)
10 KOG0318 WD40 repeat stress pro 100.0 1.8E-39 3.9E-44 259.4 33.0 320 8-349 183-602 (603)
11 KOG0285 Pleiotropic regulator 100.0 6.8E-41 1.5E-45 255.6 22.5 247 6-348 142-388 (460)
12 KOG0645 WD40 repeat protein [G 100.0 1.3E-39 2.9E-44 239.5 27.6 297 5-349 4-311 (312)
13 KOG0293 WD40 repeat-containing 100.0 2E-40 4.2E-45 257.5 22.9 294 4-348 213-512 (519)
14 KOG0295 WD40 repeat-containing 100.0 2.6E-40 5.7E-45 252.7 21.4 267 3-348 138-405 (406)
15 KOG0271 Notchless-like WD40 re 100.0 3.8E-40 8.2E-45 253.5 22.3 275 4-295 146-479 (480)
16 KOG0295 WD40 repeat-containing 100.0 2.8E-40 6.2E-45 252.5 20.7 254 6-349 99-364 (406)
17 KOG0273 Beta-transducin family 100.0 2.9E-39 6.3E-44 254.8 26.0 250 16-349 236-523 (524)
18 KOG0263 Transcription initiati 100.0 9.9E-40 2.1E-44 272.8 24.2 240 5-328 441-695 (707)
19 KOG0296 Angio-associated migra 100.0 2.2E-38 4.7E-43 242.3 29.4 289 6-349 55-398 (399)
20 KOG0265 U5 snRNP-specific prot 100.0 2E-38 4.4E-43 236.6 26.0 286 6-347 38-336 (338)
21 KOG0284 Polyadenylation factor 100.0 2E-40 4.3E-45 256.9 15.6 246 10-348 133-379 (464)
22 KOG0318 WD40 repeat stress pro 100.0 9.9E-38 2.2E-42 249.4 31.3 330 1-349 133-560 (603)
23 KOG0284 Polyadenylation factor 100.0 1.9E-40 4E-45 257.1 15.3 240 15-348 96-336 (464)
24 KOG0281 Beta-TrCP (transducin 100.0 2.4E-40 5.1E-45 252.0 15.2 251 4-348 226-476 (499)
25 cd00200 WD40 WD40 domain, foun 100.0 1.8E-37 3.9E-42 252.9 33.5 284 8-347 2-289 (289)
26 KOG0266 WD40 repeat-containing 100.0 7.6E-38 1.7E-42 267.0 30.1 287 9-348 152-453 (456)
27 KOG0291 WD40-repeat-containing 100.0 3.9E-37 8.3E-42 256.0 30.7 280 14-348 264-549 (893)
28 KOG0316 Conserved WD40 repeat- 100.0 1.7E-37 3.8E-42 224.1 23.2 246 6-348 8-256 (307)
29 KOG0276 Vesicle coat complex C 100.0 5E-38 1.1E-42 256.2 21.9 252 5-347 3-255 (794)
30 KOG0273 Beta-transducin family 100.0 4.9E-37 1.1E-41 242.3 25.8 287 8-349 172-482 (524)
31 KOG0315 G-protein beta subunit 100.0 3.4E-36 7.5E-41 219.1 27.7 269 4-326 29-308 (311)
32 KOG0286 G-protein beta subunit 100.0 1.5E-36 3.2E-41 225.9 26.2 247 4-295 86-343 (343)
33 KOG0319 WD40-repeat-containing 100.0 6.6E-37 1.4E-41 253.9 24.1 322 4-349 93-535 (775)
34 KOG0281 Beta-TrCP (transducin 100.0 4.8E-38 1E-42 239.5 14.5 230 14-349 196-428 (499)
35 KOG0277 Peroxisomal targeting 100.0 3.7E-37 8.1E-42 224.7 17.9 246 14-347 59-307 (311)
36 KOG0291 WD40-repeat-containing 100.0 8.4E-36 1.8E-40 248.1 28.2 258 8-349 343-612 (893)
37 KOG0319 WD40-repeat-containing 100.0 2.6E-36 5.7E-41 250.4 24.3 248 9-347 359-617 (775)
38 KOG0973 Histone transcription 100.0 6.6E-36 1.4E-40 258.3 27.4 291 12-349 10-355 (942)
39 KOG0292 Vesicle coat complex C 100.0 9.1E-37 2E-41 258.0 21.5 278 9-349 3-280 (1202)
40 PLN00181 protein SPA1-RELATED; 100.0 1.1E-34 2.3E-39 265.4 35.1 290 11-348 479-792 (793)
41 KOG0264 Nucleosome remodeling 100.0 5.3E-36 1.2E-40 235.6 21.3 260 13-349 122-404 (422)
42 KOG0276 Vesicle coat complex C 100.0 1.5E-35 3.2E-40 241.9 23.5 252 3-345 43-295 (794)
43 KOG0275 Conserved WD40 repeat- 100.0 1.5E-36 3.3E-41 229.6 15.2 282 13-347 211-507 (508)
44 KOG0313 Microtubule binding pr 100.0 4.2E-35 9.2E-40 225.5 23.1 257 3-347 132-416 (423)
45 KOG0278 Serine/threonine kinas 100.0 6.3E-36 1.4E-40 218.0 17.5 287 5-348 4-296 (334)
46 KOG0643 Translation initiation 100.0 9.9E-35 2.1E-39 213.6 22.4 254 9-347 4-315 (327)
47 KOG0285 Pleiotropic regulator 100.0 1.1E-34 2.4E-39 221.7 20.9 257 3-347 181-437 (460)
48 KOG1446 Histone H3 (Lys4) meth 100.0 1.9E-32 4.1E-37 206.5 30.6 286 4-347 3-301 (311)
49 KOG0294 WD40 repeat-containing 100.0 9.2E-34 2E-38 213.2 23.2 245 6-349 34-281 (362)
50 KOG0283 WD40 repeat-containing 100.0 2.6E-34 5.7E-39 242.3 22.7 254 7-348 258-575 (712)
51 KOG0292 Vesicle coat complex C 100.0 4.6E-34 9.9E-39 241.8 23.3 250 6-348 42-320 (1202)
52 KOG0277 Peroxisomal targeting 100.0 9.9E-34 2.1E-38 206.9 21.2 243 19-349 12-265 (311)
53 KOG0645 WD40 repeat protein [G 100.0 4.4E-33 9.4E-38 205.3 24.6 237 13-297 59-311 (312)
54 KOG0268 Sof1-like rRNA process 100.0 7.4E-35 1.6E-39 223.0 15.2 282 7-348 58-344 (433)
55 KOG0640 mRNA cleavage stimulat 100.0 2.1E-33 4.5E-38 211.1 21.6 259 7-347 104-424 (430)
56 PTZ00421 coronin; Provisional 100.0 1.1E-31 2.3E-36 228.4 31.3 246 14-349 19-290 (493)
57 KOG0266 WD40 repeat-containing 100.0 1.3E-32 2.8E-37 235.0 25.9 246 7-297 195-454 (456)
58 KOG0643 Translation initiation 100.0 1.7E-32 3.6E-37 201.9 22.6 253 3-299 40-319 (327)
59 PTZ00421 coronin; Provisional 100.0 1.5E-31 3.3E-36 227.4 31.1 228 10-328 70-313 (493)
60 KOG0316 Conserved WD40 repeat- 100.0 2.4E-32 5.2E-37 197.6 22.1 246 4-346 48-296 (307)
61 KOG0305 Anaphase promoting com 100.0 3E-32 6.4E-37 224.0 24.8 241 13-348 215-460 (484)
62 PTZ00420 coronin; Provisional 100.0 7.1E-31 1.5E-35 224.4 33.5 229 34-349 50-293 (568)
63 KOG0296 Angio-associated migra 100.0 9.5E-32 2.1E-36 206.1 24.9 282 3-297 94-398 (399)
64 KOG0647 mRNA export protein (c 100.0 5.6E-32 1.2E-36 202.5 23.1 269 14-340 26-315 (347)
65 KOG0274 Cdc4 and related F-box 100.0 3.8E-32 8.3E-37 231.4 25.2 243 5-349 238-482 (537)
66 KOG0313 Microtubule binding pr 100.0 4.7E-32 1E-36 208.8 22.5 244 14-349 104-376 (423)
67 KOG0288 WD40 repeat protein Ti 100.0 2.7E-33 5.8E-38 217.8 15.3 282 7-347 167-459 (459)
68 KOG0306 WD40-repeat-containing 100.0 5.1E-32 1.1E-36 225.6 23.4 252 3-348 402-663 (888)
69 KOG1407 WD40 repeat protein [F 100.0 3.4E-31 7.4E-36 194.4 24.8 282 9-349 14-311 (313)
70 KOG0289 mRNA splicing factor [ 100.0 1.3E-31 2.8E-36 209.8 23.6 256 4-349 250-506 (506)
71 KOG0310 Conserved WD40 repeat- 100.0 1.6E-31 3.5E-36 212.2 23.2 277 14-345 25-305 (487)
72 PTZ00420 coronin; Provisional 100.0 8.7E-31 1.9E-35 223.9 29.5 234 6-330 65-318 (568)
73 KOG0265 U5 snRNP-specific prot 100.0 1.7E-31 3.6E-36 199.8 21.5 249 51-348 40-295 (338)
74 KOG0306 WD40-repeat-containing 100.0 4.6E-31 9.9E-36 220.0 25.1 243 9-347 367-620 (888)
75 KOG0300 WD40 repeat-containing 100.0 6.1E-32 1.3E-36 204.1 18.1 254 5-349 138-428 (481)
76 KOG0299 U3 snoRNP-associated p 100.0 2.9E-31 6.3E-36 209.3 22.4 255 8-349 135-410 (479)
77 KOG0282 mRNA splicing factor [ 100.0 3.6E-32 7.8E-37 215.6 16.7 239 4-295 247-503 (503)
78 KOG1036 Mitotic spindle checkp 100.0 1.2E-30 2.6E-35 196.0 23.9 265 14-339 12-294 (323)
79 KOG1332 Vesicle coat complex C 100.0 2.1E-31 4.6E-36 193.7 18.5 267 11-347 7-284 (299)
80 KOG0308 Conserved WD40 repeat- 100.0 1.2E-31 2.6E-36 219.9 18.0 246 14-349 20-285 (735)
81 KOG0278 Serine/threonine kinas 100.0 2.2E-32 4.7E-37 199.6 12.0 242 4-300 48-300 (334)
82 cd00200 WD40 WD40 domain, foun 100.0 1.9E-29 4.1E-34 205.6 29.6 245 5-295 41-289 (289)
83 KOG0274 Cdc4 and related F-box 100.0 3.6E-30 7.8E-35 219.4 24.8 234 14-349 207-441 (537)
84 KOG0641 WD40 repeat protein [G 100.0 1.8E-28 3.9E-33 176.9 29.0 286 14-349 31-349 (350)
85 KOG0289 mRNA splicing factor [ 100.0 6.5E-30 1.4E-34 200.3 23.3 240 16-347 220-460 (506)
86 PLN00181 protein SPA1-RELATED; 100.0 2.1E-29 4.6E-34 230.7 30.5 264 37-348 457-737 (793)
87 KOG0646 WD40 repeat protein [G 100.0 6.3E-30 1.4E-34 202.1 20.0 240 15-329 81-330 (476)
88 KOG0301 Phospholipase A2-activ 100.0 2.2E-29 4.7E-34 208.2 22.9 236 9-348 51-287 (745)
89 KOG0639 Transducin-like enhanc 100.0 6.7E-30 1.5E-34 204.1 18.8 284 8-348 413-703 (705)
90 KOG2445 Nuclear pore complex c 100.0 5.1E-28 1.1E-32 181.9 27.0 264 13-348 11-317 (361)
91 KOG0293 WD40 repeat-containing 100.0 1.7E-29 3.7E-34 196.9 19.4 248 51-348 217-469 (519)
92 KOG0283 WD40 repeat-containing 100.0 1.6E-29 3.5E-34 213.6 20.6 215 51-348 259-531 (712)
93 KOG0299 U3 snoRNP-associated p 100.0 7.4E-29 1.6E-33 195.8 22.4 248 12-340 199-447 (479)
94 KOG1407 WD40 repeat protein [F 100.0 5.6E-29 1.2E-33 182.8 19.3 240 52-345 14-257 (313)
95 KOG0264 Nucleosome remodeling 100.0 3.6E-29 7.8E-34 197.3 19.3 228 6-298 168-405 (422)
96 KOG0275 Conserved WD40 repeat- 100.0 3.5E-30 7.6E-35 195.2 12.8 206 57-348 212-422 (508)
97 KOG0269 WD40 repeat-containing 100.0 6E-30 1.3E-34 213.9 15.1 239 17-344 89-335 (839)
98 KOG0772 Uncharacterized conser 100.0 2E-28 4.4E-33 196.1 22.6 288 9-346 161-484 (641)
99 KOG2055 WD40 repeat protein [G 100.0 5.4E-28 1.2E-32 191.1 23.4 283 15-348 213-511 (514)
100 KOG0269 WD40 repeat-containing 100.0 7.8E-29 1.7E-33 207.4 18.1 246 16-349 40-296 (839)
101 KOG0640 mRNA cleavage stimulat 100.0 1.5E-28 3.3E-33 185.1 17.8 213 51-349 105-335 (430)
102 KOG0308 Conserved WD40 repeat- 100.0 4.9E-29 1.1E-33 204.8 16.1 251 7-348 65-326 (735)
103 KOG4283 Transcription-coupled 100.0 7E-28 1.5E-32 180.3 19.9 221 12-301 40-280 (397)
104 KOG0300 WD40 repeat-containing 100.0 6.4E-28 1.4E-32 182.5 19.8 257 3-349 178-476 (481)
105 KOG0301 Phospholipase A2-activ 100.0 7.7E-28 1.7E-32 199.1 21.8 241 5-348 4-248 (745)
106 KOG1446 Histone H3 (Lys4) meth 100.0 4.2E-26 9.1E-31 172.4 27.0 245 49-349 5-262 (311)
107 KOG0267 Microtubule severing p 100.0 2.4E-29 5.1E-34 209.0 10.3 238 9-340 22-259 (825)
108 KOG0294 WD40 repeat-containing 100.0 6E-27 1.3E-31 176.7 21.8 210 5-300 73-284 (362)
109 KOG1539 WD repeat protein [Gen 100.0 6.7E-26 1.5E-30 191.4 30.1 337 4-349 191-606 (910)
110 KOG1408 WD40 repeat protein [F 100.0 1.5E-27 3.2E-32 198.5 19.8 248 13-349 457-713 (1080)
111 KOG1539 WD repeat protein [Gen 100.0 2.8E-26 6.1E-31 193.7 27.4 291 5-347 234-646 (910)
112 KOG0302 Ribosome Assembly prot 100.0 3.4E-27 7.3E-32 182.1 19.8 254 12-343 148-433 (440)
113 KOG2096 WD40 repeat protein [G 100.0 7.9E-27 1.7E-31 176.5 20.1 261 8-346 79-399 (420)
114 KOG0305 Anaphase promoting com 100.0 1.6E-26 3.5E-31 190.4 23.1 232 21-349 183-419 (484)
115 KOG0310 Conserved WD40 repeat- 100.0 9.8E-27 2.1E-31 185.2 19.8 246 5-298 58-310 (487)
116 KOG0973 Histone transcription 100.0 1.3E-26 2.9E-31 201.1 22.3 248 6-299 60-357 (942)
117 KOG1274 WD40 repeat protein [G 100.0 6.3E-26 1.4E-30 193.5 25.4 248 13-349 11-262 (933)
118 KOG0321 WD40 repeat-containing 100.0 3.9E-26 8.4E-31 187.5 21.5 255 8-349 93-391 (720)
119 KOG0650 WD40 repeat nucleolar 100.0 6.6E-26 1.4E-30 185.0 22.5 288 7-347 392-733 (733)
120 KOG1063 RNA polymerase II elon 100.0 7.9E-26 1.7E-30 187.3 23.0 335 4-349 180-648 (764)
121 KOG1007 WD repeat protein TSSC 99.9 4.6E-26 1E-30 170.0 19.5 263 8-348 56-360 (370)
122 KOG1273 WD40 repeat protein [G 99.9 6.5E-26 1.4E-30 171.3 20.3 248 18-348 26-321 (405)
123 KOG4283 Transcription-coupled 99.9 2.5E-26 5.4E-31 172.0 17.8 218 54-349 39-276 (397)
124 KOG0646 WD40 repeat protein [G 99.9 9.7E-26 2.1E-30 178.6 22.1 236 30-348 52-306 (476)
125 KOG2106 Uncharacterized conser 99.9 1.7E-24 3.7E-29 173.4 28.8 316 7-347 146-519 (626)
126 KOG0270 WD40 repeat-containing 99.9 4.1E-26 8.8E-31 179.7 19.2 233 28-348 192-448 (463)
127 KOG1332 Vesicle coat complex C 99.9 3.7E-26 8.1E-31 166.5 17.1 220 6-298 47-287 (299)
128 KOG0647 mRNA export protein (c 99.9 2.6E-25 5.6E-30 167.0 21.0 237 56-348 25-280 (347)
129 KOG0772 Uncharacterized conser 99.9 1.1E-25 2.4E-30 180.5 20.1 258 1-298 199-488 (641)
130 KOG0302 Ribosome Assembly prot 99.9 5.1E-26 1.1E-30 175.7 17.3 211 56-349 149-378 (440)
131 KOG2048 WD40 repeat protein [G 99.9 6.7E-24 1.4E-28 175.6 30.4 280 14-346 24-316 (691)
132 KOG0267 Microtubule severing p 99.9 1.3E-27 2.9E-32 198.6 8.9 222 29-349 5-226 (825)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.7E-24 1.7E-28 174.0 30.8 262 29-349 2-279 (300)
134 KOG2106 Uncharacterized conser 99.9 7.3E-24 1.6E-28 169.8 29.0 282 16-348 247-625 (626)
135 KOG0641 WD40 repeat protein [G 99.9 3.1E-24 6.7E-29 155.1 22.6 211 9-297 83-349 (350)
136 KOG1408 WD40 repeat protein [F 99.9 1.9E-24 4.2E-29 180.2 24.1 284 19-348 328-670 (1080)
137 KOG0307 Vesicle coat complex C 99.9 4.5E-26 9.9E-31 198.9 14.8 247 15-348 64-326 (1049)
138 KOG0288 WD40 repeat protein Ti 99.9 1.2E-25 2.7E-30 175.4 15.2 240 6-294 210-458 (459)
139 KOG1009 Chromatin assembly com 99.9 3.1E-24 6.7E-29 167.4 22.4 284 15-345 13-368 (434)
140 KOG1034 Transcriptional repres 99.9 8.5E-25 1.8E-29 166.1 18.8 284 14-348 88-382 (385)
141 KOG4328 WD40 protein [Function 99.9 2E-24 4.4E-29 170.8 20.1 259 6-347 177-448 (498)
142 KOG0270 WD40 repeat-containing 99.9 1.2E-24 2.7E-29 171.4 17.3 209 12-300 240-452 (463)
143 KOG0322 G-protein beta subunit 99.9 9.9E-25 2.1E-29 160.9 15.4 255 6-348 5-322 (323)
144 KOG1188 WD40 repeat protein [G 99.9 2.9E-24 6.3E-29 164.0 17.9 151 29-214 41-198 (376)
145 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-22 3.8E-27 166.0 29.6 266 4-328 20-300 (300)
146 KOG1445 Tumor-specific antigen 99.9 3.6E-24 7.9E-29 176.4 18.7 131 7-140 71-208 (1012)
147 KOG0268 Sof1-like rRNA process 99.9 1.7E-24 3.6E-29 166.6 15.2 241 4-300 98-348 (433)
148 KOG1538 Uncharacterized conser 99.9 1.2E-23 2.6E-28 174.4 20.1 271 17-348 14-292 (1081)
149 KOG4378 Nuclear protein COP1 [ 99.9 5.4E-24 1.2E-28 170.3 16.6 222 18-329 82-304 (673)
150 KOG2048 WD40 repeat protein [G 99.9 1.3E-21 2.8E-26 162.2 28.6 323 4-349 99-548 (691)
151 KOG2055 WD40 repeat protein [G 99.9 4.9E-23 1.1E-27 163.3 19.1 248 5-297 247-512 (514)
152 KOG1274 WD40 repeat protein [G 99.9 2.7E-22 6E-27 171.6 24.6 226 6-329 47-281 (933)
153 KOG2096 WD40 repeat protein [G 99.9 8.4E-23 1.8E-27 154.9 19.0 226 51-348 79-307 (420)
154 KOG1273 WD40 repeat protein [G 99.9 1.4E-22 3E-27 153.5 20.1 242 61-347 26-278 (405)
155 KOG0639 Transducin-like enhanc 99.9 1.5E-23 3.2E-28 168.1 15.5 212 56-349 417-663 (705)
156 KOG1063 RNA polymerase II elon 99.9 1E-22 2.2E-27 169.1 20.7 259 7-348 353-698 (764)
157 KOG4227 WD40 repeat protein [G 99.9 1.9E-22 4.1E-27 157.2 20.6 297 8-347 49-385 (609)
158 KOG0290 Conserved WD40 repeat- 99.9 1E-22 2.2E-27 152.5 18.2 246 13-340 94-357 (364)
159 KOG2919 Guanine nucleotide-bin 99.9 3.2E-22 7E-27 152.0 20.0 237 15-339 104-360 (406)
160 KOG1036 Mitotic spindle checkp 99.9 1.3E-21 2.8E-26 147.7 21.9 236 57-348 12-261 (323)
161 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-22 3.7E-27 161.9 17.8 241 17-349 36-280 (673)
162 KOG2919 Guanine nucleotide-bin 99.9 1.1E-21 2.4E-26 149.1 21.0 242 18-349 52-327 (406)
163 KOG0321 WD40 repeat-containing 99.9 4.2E-22 9E-27 164.1 20.1 271 21-349 55-347 (720)
164 KOG0642 Cell-cycle nuclear pro 99.9 7.2E-23 1.6E-27 166.2 15.2 259 7-348 286-560 (577)
165 KOG4328 WD40 protein [Function 99.9 2.7E-22 5.9E-27 158.9 17.4 222 44-348 172-398 (498)
166 KOG0649 WD40 repeat protein [G 99.9 7.5E-22 1.6E-26 144.3 18.4 243 15-348 10-273 (325)
167 KOG2445 Nuclear pore complex c 99.9 3E-21 6.5E-26 145.7 21.3 219 55-348 10-255 (361)
168 KOG0303 Actin-binding protein 99.9 1.2E-21 2.6E-26 152.7 19.3 209 10-300 76-297 (472)
169 KOG1007 WD repeat protein TSSC 99.9 1.2E-21 2.7E-26 146.6 16.5 234 4-298 111-362 (370)
170 KOG0290 Conserved WD40 repeat- 99.9 9.1E-21 2E-25 142.1 20.1 257 7-349 37-318 (364)
171 KOG0307 Vesicle coat complex C 99.9 1.1E-22 2.4E-27 177.9 11.5 217 5-300 106-330 (1049)
172 KOG1963 WD40 repeat protein [G 99.9 9.7E-20 2.1E-24 155.6 28.3 291 13-348 203-537 (792)
173 KOG1334 WD40 repeat protein [G 99.9 4.8E-22 1E-26 158.8 13.2 295 5-347 132-464 (559)
174 KOG1587 Cytoplasmic dynein int 99.9 2.5E-20 5.3E-25 158.4 24.1 250 14-349 241-516 (555)
175 KOG0303 Actin-binding protein 99.9 5.8E-21 1.2E-25 148.9 18.2 207 53-348 76-293 (472)
176 KOG1034 Transcriptional repres 99.9 3.4E-21 7.4E-26 146.7 12.4 219 4-297 124-383 (385)
177 KOG0644 Uncharacterized conser 99.9 5.2E-22 1.1E-26 168.4 8.6 281 4-347 179-466 (1113)
178 COG2319 FOG: WD40 repeat [Gene 99.9 2E-18 4.4E-23 149.1 30.7 247 10-349 60-314 (466)
179 KOG1240 Protein kinase contain 99.9 4.8E-19 1E-23 156.4 25.2 305 4-347 1037-1431(1431)
180 KOG1523 Actin-related protein 99.9 6.7E-19 1.5E-23 133.9 21.6 230 9-300 4-239 (361)
181 PRK11028 6-phosphogluconolacto 99.8 9.2E-18 2E-22 139.3 28.7 257 7-348 27-303 (330)
182 KOG0650 WD40 repeat nucleolar 99.8 1.2E-19 2.7E-24 148.7 16.7 267 52-347 394-678 (733)
183 KOG1310 WD40 repeat protein [G 99.8 1.3E-19 2.8E-24 147.3 16.5 250 6-301 41-307 (758)
184 KOG1188 WD40 repeat protein [G 99.8 2.4E-19 5.1E-24 137.4 16.8 253 4-298 59-347 (376)
185 KOG1517 Guanine nucleotide bin 99.8 1.3E-18 2.9E-23 151.6 23.5 248 17-349 1066-1333(1387)
186 COG2319 FOG: WD40 repeat [Gene 99.8 2E-17 4.3E-22 142.9 30.9 249 7-349 100-359 (466)
187 KOG0771 Prolactin regulatory e 99.8 2.4E-19 5.2E-24 141.1 15.7 199 19-299 148-356 (398)
188 KOG1538 Uncharacterized conser 99.8 2E-19 4.3E-24 149.7 15.9 236 3-298 41-294 (1081)
189 KOG2110 Uncharacterized conser 99.8 1.4E-17 2.9E-22 129.2 24.6 235 15-349 5-248 (391)
190 KOG0771 Prolactin regulatory e 99.8 4.1E-19 8.8E-24 139.9 16.1 204 62-348 148-353 (398)
191 KOG2110 Uncharacterized conser 99.8 1.1E-16 2.4E-21 124.3 28.5 198 16-300 47-251 (391)
192 KOG1445 Tumor-specific antigen 99.8 6.2E-19 1.3E-23 145.9 15.3 234 28-348 591-843 (1012)
193 KOG1587 Cytoplasmic dynein int 99.8 7.5E-18 1.6E-22 143.4 22.2 233 38-349 222-472 (555)
194 KOG1963 WD40 repeat protein [G 99.8 4.2E-17 9E-22 139.8 26.1 300 3-348 45-486 (792)
195 KOG0649 WD40 repeat protein [G 99.8 6.7E-18 1.5E-22 123.8 18.2 204 60-349 12-235 (325)
196 KOG1524 WD40 repeat-containing 99.8 2.1E-18 4.5E-23 140.0 16.9 208 28-293 75-282 (737)
197 KOG0642 Cell-cycle nuclear pro 99.8 9.5E-19 2E-23 142.6 14.9 213 5-299 334-563 (577)
198 KOG1272 WD40-repeat-containing 99.8 1.6E-19 3.5E-24 143.8 10.1 228 19-347 133-360 (545)
199 KOG4497 Uncharacterized conser 99.8 1.7E-18 3.6E-23 132.4 15.2 307 16-348 49-390 (447)
200 KOG1524 WD40 repeat-containing 99.8 2.1E-18 4.4E-23 140.1 15.4 218 13-328 12-237 (737)
201 KOG1523 Actin-related protein 99.8 1.3E-17 2.8E-22 127.0 18.1 216 54-347 6-234 (361)
202 KOG0644 Uncharacterized conser 99.8 1.5E-19 3.3E-24 153.7 8.6 239 51-348 183-425 (1113)
203 PRK01742 tolB translocation pr 99.8 2.3E-17 5.1E-22 141.0 20.6 225 4-329 192-426 (429)
204 KOG2139 WD40 repeat protein [G 99.8 4.8E-16 1E-20 120.5 24.3 282 16-348 99-430 (445)
205 KOG2394 WD40 protein DMR-N9 [G 99.8 2.4E-17 5.1E-22 133.9 16.4 138 15-156 219-384 (636)
206 PRK01742 tolB translocation pr 99.8 1.2E-16 2.6E-21 136.7 20.0 211 37-348 183-400 (429)
207 KOG2394 WD40 protein DMR-N9 [G 99.8 1.4E-16 3.1E-21 129.4 18.6 240 20-327 128-383 (636)
208 KOG1517 Guanine nucleotide bin 99.8 2.4E-16 5.3E-21 137.8 20.6 249 16-348 1110-1380(1387)
209 PRK11028 6-phosphogluconolacto 99.7 3.6E-15 7.9E-20 123.8 26.7 235 31-348 5-257 (330)
210 KOG1009 Chromatin assembly com 99.7 9.3E-17 2E-21 126.1 15.2 164 57-300 12-198 (434)
211 PF02239 Cytochrom_D1: Cytochr 99.7 1.9E-14 4E-19 119.4 29.2 291 4-348 25-346 (369)
212 PRK03629 tolB translocation pr 99.7 2.4E-15 5.2E-20 128.4 24.7 226 4-328 187-427 (429)
213 KOG4227 WD40 repeat protein [G 99.7 3.4E-16 7.3E-21 122.7 17.5 246 52-349 50-322 (609)
214 KOG3881 Uncharacterized conser 99.7 8.3E-16 1.8E-20 120.3 19.5 253 15-348 55-319 (412)
215 KOG2111 Uncharacterized conser 99.7 5.6E-15 1.2E-19 112.8 23.2 235 18-349 8-256 (346)
216 KOG1272 WD40-repeat-containing 99.7 4.4E-18 9.5E-23 135.7 6.8 195 58-349 129-323 (545)
217 KOG3881 Uncharacterized conser 99.7 1.1E-15 2.3E-20 119.7 18.3 206 11-299 101-322 (412)
218 KOG1310 WD40 repeat protein [G 99.7 5.7E-17 1.2E-21 132.2 9.9 185 97-348 44-230 (758)
219 KOG0322 G-protein beta subunit 99.7 2.1E-16 4.5E-21 117.4 11.6 161 14-211 149-322 (323)
220 PRK04922 tolB translocation pr 99.7 1.1E-14 2.3E-19 125.1 23.0 226 4-328 192-432 (433)
221 KOG2321 WD40 repeat protein [G 99.7 8.2E-15 1.8E-19 120.4 19.8 252 7-347 44-300 (703)
222 PRK02889 tolB translocation pr 99.7 2.3E-14 4.9E-19 122.6 23.3 167 4-214 184-362 (427)
223 PRK03629 tolB translocation pr 99.7 9.9E-14 2.2E-18 118.6 26.6 212 38-348 179-405 (429)
224 PRK05137 tolB translocation pr 99.7 4.7E-14 1E-18 121.2 24.5 145 4-156 190-343 (435)
225 PRK05137 tolB translocation pr 99.7 1E-13 2.2E-18 119.2 26.3 212 38-348 182-411 (435)
226 KOG2139 WD40 repeat protein [G 99.7 1.2E-13 2.7E-18 107.4 23.7 146 6-158 130-292 (445)
227 KOG2111 Uncharacterized conser 99.7 4.3E-13 9.3E-18 102.6 26.2 178 38-300 75-259 (346)
228 KOG1409 Uncharacterized conser 99.7 9.1E-15 2E-19 112.8 17.2 255 4-349 13-270 (404)
229 KOG1240 Protein kinase contain 99.7 1.9E-14 4.1E-19 128.0 20.2 222 43-349 1034-1273(1431)
230 PF02239 Cytochrom_D1: Cytochr 99.7 3.1E-13 6.7E-18 112.2 26.2 269 29-349 6-302 (369)
231 KOG4497 Uncharacterized conser 99.7 3.3E-15 7.2E-20 114.6 13.3 218 63-347 13-238 (447)
232 PF08662 eIF2A: Eukaryotic tra 99.6 8.3E-14 1.8E-18 105.1 19.1 149 20-214 10-181 (194)
233 PRK04922 tolB translocation pr 99.6 2.1E-13 4.7E-18 117.0 23.5 212 38-348 184-410 (433)
234 PF10282 Lactonase: Lactonase, 99.6 9.1E-12 2E-16 103.6 32.4 276 38-348 13-321 (345)
235 PRK02889 tolB translocation pr 99.6 1.6E-13 3.5E-18 117.4 22.2 206 38-340 176-391 (427)
236 PF08662 eIF2A: Eukaryotic tra 99.6 2.5E-13 5.3E-18 102.6 19.4 150 62-298 9-180 (194)
237 KOG1409 Uncharacterized conser 99.6 4.3E-13 9.3E-18 103.7 19.8 201 15-301 68-274 (404)
238 KOG0280 Uncharacterized conser 99.6 1.9E-13 4.1E-18 103.4 17.4 210 37-331 45-266 (339)
239 TIGR02800 propeller_TolB tol-p 99.6 7.7E-13 1.7E-17 113.9 23.9 166 4-213 178-355 (417)
240 KOG1354 Serine/threonine prote 99.6 2.6E-13 5.6E-18 105.0 18.4 260 15-348 25-358 (433)
241 KOG1334 WD40 repeat protein [G 99.6 6.5E-14 1.4E-18 112.9 15.0 257 51-348 135-423 (559)
242 PRK01029 tolB translocation pr 99.6 2E-12 4.3E-17 110.2 24.6 213 4-299 173-405 (428)
243 KOG4547 WD40 repeat-containing 99.6 2.5E-12 5.5E-17 106.3 23.7 189 27-298 4-221 (541)
244 KOG2314 Translation initiation 99.6 6.4E-13 1.4E-17 109.1 19.6 307 19-348 214-572 (698)
245 KOG0974 WD-repeat protein WDR6 99.6 2E-13 4.4E-18 119.7 16.5 192 21-299 93-290 (967)
246 PRK00178 tolB translocation pr 99.6 3.9E-12 8.3E-17 109.7 24.3 145 4-156 187-340 (430)
247 KOG0974 WD-repeat protein WDR6 99.6 2.6E-13 5.7E-18 119.0 16.9 193 61-348 90-287 (967)
248 TIGR02800 propeller_TolB tol-p 99.5 6.8E-12 1.5E-16 108.0 24.2 204 38-340 170-385 (417)
249 KOG4547 WD40 repeat-containing 99.5 2.1E-12 4.6E-17 106.8 19.5 191 68-348 3-219 (541)
250 PRK04792 tolB translocation pr 99.5 4.8E-12 1E-16 108.7 22.6 143 6-156 208-359 (448)
251 KOG1064 RAVE (regulator of V-A 99.5 1.4E-13 2.9E-18 127.0 13.6 191 10-299 2203-2400(2439)
252 PF10282 Lactonase: Lactonase, 99.5 2.8E-10 6.1E-15 94.8 32.3 241 18-298 39-323 (345)
253 KOG0280 Uncharacterized conser 99.5 6.8E-12 1.5E-16 95.2 19.1 247 16-346 70-330 (339)
254 PRK00178 tolB translocation pr 99.5 6.6E-11 1.4E-15 102.1 26.1 111 39-156 180-296 (430)
255 COG2706 3-carboxymuconate cycl 99.5 5.8E-10 1.3E-14 87.6 28.2 256 13-348 37-320 (346)
256 KOG2321 WD40 repeat protein [G 99.5 2.8E-12 6.1E-17 105.8 15.8 200 20-299 138-345 (703)
257 KOG4190 Uncharacterized conser 99.5 6.6E-13 1.4E-17 109.4 10.6 209 7-299 727-950 (1034)
258 COG4946 Uncharacterized protei 99.5 3.5E-10 7.6E-15 91.8 25.6 174 23-242 327-505 (668)
259 KOG1064 RAVE (regulator of V-A 99.4 1E-12 2.2E-17 121.5 12.2 213 31-349 2183-2398(2439)
260 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.2E-09 4.8E-14 87.5 30.1 103 38-142 27-145 (352)
261 PRK01029 tolB translocation pr 99.4 2.6E-10 5.6E-15 97.4 24.9 218 38-348 165-402 (428)
262 PF04762 IKI3: IKI3 family; I 99.4 1E-09 2.2E-14 101.4 29.5 290 15-348 75-455 (928)
263 KOG4714 Nucleoporin [Nuclear s 99.4 1.5E-11 3.2E-16 91.8 14.0 246 18-347 39-316 (319)
264 KOG2315 Predicted translation 99.4 1.8E-10 3.9E-15 95.1 21.4 229 19-348 129-389 (566)
265 PRK04792 tolB translocation pr 99.4 3.9E-10 8.5E-15 97.1 24.0 111 39-156 199-315 (448)
266 PLN02919 haloacid dehalogenase 99.4 2.9E-09 6.3E-14 100.2 31.0 283 19-349 571-888 (1057)
267 KOG2041 WD40 repeat protein [G 99.4 1.3E-10 2.8E-15 98.9 19.7 276 15-348 14-336 (1189)
268 PF04762 IKI3: IKI3 family; I 99.4 7.8E-09 1.7E-13 95.6 32.3 306 16-347 22-377 (928)
269 COG5354 Uncharacterized protei 99.4 1E-09 2.2E-14 89.8 22.4 285 16-348 72-394 (561)
270 KOG4714 Nucleoporin [Nuclear s 99.3 3.4E-11 7.4E-16 89.9 12.4 167 7-213 81-255 (319)
271 COG5170 CDC55 Serine/threonine 99.3 8.3E-11 1.8E-15 90.3 14.7 221 14-300 25-312 (460)
272 COG4946 Uncharacterized protei 99.3 9.3E-10 2E-14 89.4 20.5 142 13-161 357-503 (668)
273 KOG3914 WD repeat protein WDR4 99.3 1.3E-10 2.9E-15 92.0 14.5 156 20-218 67-229 (390)
274 PF08450 SGL: SMP-30/Gluconola 99.3 1.5E-07 3.3E-12 74.7 31.1 228 20-338 4-244 (246)
275 KOG4532 WD40-like repeat conta 99.3 3.3E-09 7.1E-14 80.0 19.5 234 28-339 84-322 (344)
276 KOG2315 Predicted translation 99.3 8.6E-09 1.9E-13 85.4 23.6 274 16-349 35-344 (566)
277 KOG0309 Conserved WD40 repeat- 99.3 6.9E-11 1.5E-15 100.7 11.3 254 18-349 70-339 (1081)
278 KOG2041 WD40 repeat protein [G 99.3 3.4E-10 7.4E-15 96.4 15.3 230 7-273 63-317 (1189)
279 KOG3914 WD repeat protein WDR4 99.2 2.6E-10 5.7E-15 90.4 13.6 159 61-302 65-228 (390)
280 COG5354 Uncharacterized protei 99.2 4.9E-09 1.1E-13 85.9 20.9 275 14-348 31-347 (561)
281 COG2706 3-carboxymuconate cycl 99.2 4.1E-08 8.8E-13 77.4 25.2 241 37-348 15-273 (346)
282 KOG4190 Uncharacterized conser 99.2 5.1E-11 1.1E-15 98.5 8.2 176 51-300 728-909 (1034)
283 PRK04043 tolB translocation pr 99.2 4.2E-08 9.1E-13 83.5 25.3 141 5-156 178-328 (419)
284 TIGR03300 assembly_YfgL outer 99.2 7.2E-08 1.6E-12 81.9 26.7 263 28-346 105-376 (377)
285 PF15492 Nbas_N: Neuroblastoma 99.2 1.7E-07 3.6E-12 71.9 24.5 236 64-349 3-259 (282)
286 PLN02919 haloacid dehalogenase 99.1 6.2E-08 1.3E-12 91.5 26.1 234 18-301 626-892 (1057)
287 KOG1645 RING-finger-containing 99.1 1.4E-08 3.1E-13 80.9 17.5 87 4-91 182-269 (463)
288 TIGR03300 assembly_YfgL outer 99.1 3.3E-07 7.2E-12 77.9 27.4 259 28-348 65-337 (377)
289 KOG2695 WD40 repeat protein [G 99.1 4.8E-10 1E-14 87.3 9.0 166 74-330 228-404 (425)
290 KOG0309 Conserved WD40 repeat- 99.1 5.6E-10 1.2E-14 95.4 9.2 203 58-348 24-231 (1081)
291 KOG1920 IkappaB kinase complex 99.1 1E-07 2.2E-12 86.4 23.3 138 15-156 68-251 (1265)
292 PF13360 PQQ_2: PQQ-like domai 99.1 4.3E-07 9.3E-12 71.9 25.0 137 37-216 2-144 (238)
293 KOG4532 WD40-like repeat conta 99.1 4.2E-08 9.1E-13 74.1 17.5 152 30-215 130-285 (344)
294 KOG0882 Cyclophilin-related pe 99.1 3.5E-09 7.7E-14 85.5 12.5 222 13-303 7-237 (558)
295 PF07433 DUF1513: Protein of u 99.1 1.9E-06 4.1E-11 68.2 27.2 136 19-156 8-172 (305)
296 KOG2314 Translation initiation 99.1 1.4E-07 3.1E-12 78.4 21.3 230 61-347 213-476 (698)
297 TIGR02658 TTQ_MADH_Hv methylam 99.1 9.6E-07 2.1E-11 72.3 26.0 89 5-96 37-144 (352)
298 PF00400 WD40: WD domain, G-be 99.0 4.1E-10 8.8E-15 61.0 4.4 39 5-44 1-39 (39)
299 KOG2695 WD40 repeat protein [G 99.0 9.2E-10 2E-14 85.8 7.4 132 8-142 246-385 (425)
300 KOG1832 HIV-1 Vpr-binding prot 99.0 3.2E-10 7E-15 98.8 5.2 144 6-156 1092-1240(1516)
301 KOG1354 Serine/threonine prote 99.0 1.4E-08 3E-13 79.3 13.4 194 104-349 26-244 (433)
302 KOG1912 WD40 repeat protein [G 99.0 3.9E-08 8.4E-13 85.0 16.3 127 4-133 44-186 (1062)
303 PF15492 Nbas_N: Neuroblastoma 99.0 1.6E-06 3.5E-11 66.6 23.2 219 21-301 3-263 (282)
304 KOG2066 Vacuolar assembly/sort 99.0 6.9E-08 1.5E-12 83.7 17.6 151 15-221 39-196 (846)
305 PF13360 PQQ_2: PQQ-like domai 99.0 4.7E-07 1E-11 71.7 21.5 113 28-142 36-149 (238)
306 PRK04043 tolB translocation pr 99.0 1.2E-06 2.6E-11 74.7 24.7 111 38-156 169-286 (419)
307 KOG2114 Vacuolar assembly/sort 99.0 4.1E-07 8.9E-12 79.7 21.5 199 17-299 27-245 (933)
308 KOG1912 WD40 repeat protein [G 99.0 2.2E-07 4.7E-12 80.5 19.4 156 15-212 15-186 (1062)
309 PF00400 WD40: WD domain, G-be 98.9 5.9E-09 1.3E-13 56.4 6.5 38 255-295 2-39 (39)
310 KOG1275 PAB-dependent poly(A) 98.9 7.5E-08 1.6E-12 84.7 15.0 185 28-295 147-340 (1118)
311 PRK11138 outer membrane biogen 98.9 4.4E-06 9.5E-11 71.4 25.1 222 29-349 161-394 (394)
312 KOG4649 PQQ (pyrrolo-quinoline 98.9 1.6E-05 3.4E-10 60.5 26.7 114 23-142 18-132 (354)
313 KOG0882 Cyclophilin-related pe 98.8 1E-07 2.2E-12 77.3 11.8 212 57-348 8-230 (558)
314 KOG1008 Uncharacterized conser 98.8 6.9E-09 1.5E-13 87.6 5.1 203 16-299 57-277 (783)
315 KOG2066 Vacuolar assembly/sort 98.7 7.9E-07 1.7E-11 77.4 15.9 123 27-156 82-209 (846)
316 KOG1275 PAB-dependent poly(A) 98.7 2.6E-07 5.6E-12 81.5 13.0 143 27-212 186-342 (1118)
317 KOG3617 WD40 and TPR repeat-co 98.7 8.9E-07 1.9E-11 77.7 15.0 83 4-88 49-131 (1416)
318 KOG2114 Vacuolar assembly/sort 98.7 3.8E-06 8.2E-11 73.9 18.0 194 65-347 30-241 (933)
319 KOG3621 WD40 repeat-containing 98.7 1.3E-05 2.9E-10 69.1 20.4 118 16-134 34-155 (726)
320 PF06977 SdiA-regulated: SdiA- 98.6 9.7E-05 2.1E-09 57.8 25.1 169 9-213 15-202 (248)
321 KOG1008 Uncharacterized conser 98.6 1.5E-08 3.2E-13 85.6 2.9 203 58-349 56-275 (783)
322 PRK11138 outer membrane biogen 98.6 0.00012 2.6E-09 62.7 26.2 107 28-142 69-187 (394)
323 COG5170 CDC55 Serine/threonine 98.6 1.2E-06 2.7E-11 67.9 12.3 190 103-349 26-252 (460)
324 PF11768 DUF3312: Protein of u 98.6 7.5E-06 1.6E-10 69.4 17.9 115 60-214 207-331 (545)
325 KOG1832 HIV-1 Vpr-binding prot 98.6 4.1E-08 8.9E-13 86.2 4.8 193 51-299 1094-1293(1516)
326 PF11768 DUF3312: Protein of u 98.6 1.2E-05 2.7E-10 68.1 18.9 110 19-134 209-330 (545)
327 PF08450 SGL: SMP-30/Gluconola 98.6 0.00015 3.3E-09 57.7 25.3 194 63-348 4-212 (246)
328 PF08596 Lgl_C: Lethal giant l 98.6 0.00017 3.6E-09 60.9 25.1 121 60-212 3-173 (395)
329 PF07433 DUF1513: Protein of u 98.6 0.00013 2.9E-09 58.0 22.4 99 21-121 56-180 (305)
330 KOG1920 IkappaB kinase complex 98.6 6.2E-05 1.3E-09 69.2 23.0 228 58-348 68-321 (1265)
331 PF03178 CPSF_A: CPSF A subuni 98.5 0.00035 7.7E-09 58.0 24.7 226 38-345 2-261 (321)
332 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00013 2.9E-09 61.3 22.4 93 37-131 22-129 (353)
333 PF14583 Pectate_lyase22: Olig 98.4 0.00064 1.4E-08 56.0 24.4 201 3-243 18-255 (386)
334 KOG3617 WD40 and TPR repeat-co 98.4 6.6E-06 1.4E-10 72.5 12.8 110 62-213 19-132 (1416)
335 PF04053 Coatomer_WDAD: Coatom 98.4 0.00045 9.8E-09 59.2 23.5 149 9-213 26-174 (443)
336 PF00780 CNH: CNH domain; Int 98.4 0.0008 1.7E-08 54.5 24.6 219 28-300 7-258 (275)
337 KOG3621 WD40 repeat-containing 98.3 2.9E-05 6.4E-10 67.1 13.3 118 58-213 33-155 (726)
338 PF06977 SdiA-regulated: SdiA- 98.3 0.0012 2.5E-08 51.8 21.0 215 53-346 16-247 (248)
339 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0024 5.1E-08 54.7 25.0 48 39-88 62-109 (410)
340 KOG4640 Anaphase-promoting com 98.2 8.9E-06 1.9E-10 69.3 9.3 94 16-113 21-115 (665)
341 PRK02888 nitrous-oxide reducta 98.2 0.00084 1.8E-08 58.8 21.1 80 265-348 321-403 (635)
342 KOG1645 RING-finger-containing 98.2 2.3E-05 5E-10 63.1 10.9 94 82-215 175-269 (463)
343 PF08596 Lgl_C: Lethal giant l 98.2 0.0024 5.3E-08 54.0 23.3 114 17-133 3-173 (395)
344 PF08553 VID27: VID27 cytoplas 98.2 0.0009 2E-08 60.8 20.7 124 29-156 494-628 (794)
345 PRK02888 nitrous-oxide reducta 98.1 0.00079 1.7E-08 59.0 19.3 137 37-213 214-405 (635)
346 COG0823 TolB Periplasmic compo 98.1 0.0003 6.4E-09 60.0 16.7 111 39-156 174-291 (425)
347 COG0823 TolB Periplasmic compo 98.1 0.00021 4.7E-09 60.8 15.7 144 5-156 182-335 (425)
348 cd00216 PQQ_DH Dehydrogenases 98.1 0.0051 1.1E-07 54.2 27.0 112 29-142 111-273 (488)
349 KOG4640 Anaphase-promoting com 98.1 1.8E-05 3.9E-10 67.5 9.0 94 59-156 21-115 (665)
350 PF05694 SBP56: 56kDa selenium 98.1 0.0051 1.1E-07 51.5 21.8 126 28-156 87-254 (461)
351 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0013 2.7E-08 55.4 18.7 229 15-285 42-345 (353)
352 PF04053 Coatomer_WDAD: Coatom 98.0 0.0021 4.6E-08 55.1 19.9 146 55-298 29-174 (443)
353 smart00320 WD40 WD40 repeats. 98.0 1.2E-05 2.5E-10 42.8 3.9 39 5-44 2-40 (40)
354 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0041 8.8E-08 53.3 20.4 193 3-241 68-275 (410)
355 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0018 3.9E-08 43.0 14.7 101 18-128 2-109 (111)
356 COG3386 Gluconolactonase [Carb 97.9 0.0085 1.8E-07 48.9 23.0 229 22-338 31-274 (307)
357 PF08553 VID27: VID27 cytoplas 97.9 0.00075 1.6E-08 61.3 15.3 139 122-340 501-639 (794)
358 smart00320 WD40 WD40 repeats. 97.9 6.6E-05 1.4E-09 39.6 5.6 38 49-86 3-40 (40)
359 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0031 6.7E-08 42.0 13.9 85 61-156 2-90 (111)
360 COG3391 Uncharacterized conser 97.8 0.016 3.5E-07 49.3 24.6 132 19-156 77-216 (381)
361 KOG4441 Proteins containing BT 97.8 0.0097 2.1E-07 53.3 20.0 103 28-135 285-406 (571)
362 cd00216 PQQ_DH Dehydrogenases 97.8 0.026 5.6E-07 49.9 26.0 111 29-142 62-192 (488)
363 PF03178 CPSF_A: CPSF A subuni 97.7 0.019 4.1E-07 47.8 22.3 143 28-213 42-203 (321)
364 PF06433 Me-amine-dh_H: Methyl 97.7 0.017 3.6E-07 47.0 27.0 103 38-142 17-135 (342)
365 PF02897 Peptidase_S9_N: Proly 97.7 0.028 6.1E-07 48.6 28.4 116 17-135 125-262 (414)
366 COG3391 Uncharacterized conser 97.7 0.026 5.6E-07 48.1 26.1 155 18-214 33-192 (381)
367 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.0061 1.3E-07 46.9 14.9 105 115-302 23-128 (354)
368 COG3204 Uncharacterized protei 97.7 0.017 3.7E-07 45.5 18.6 166 12-213 82-264 (316)
369 PF00780 CNH: CNH domain; Int 97.6 0.029 6.2E-07 45.5 21.2 63 68-136 5-67 (275)
370 PHA02713 hypothetical protein; 97.6 0.036 7.8E-07 49.8 20.8 92 39-135 273-377 (557)
371 PRK13616 lipoprotein LpqB; Pro 97.6 0.029 6.2E-07 50.4 20.0 88 59-156 350-457 (591)
372 KOG2395 Protein involved in va 97.6 0.0024 5.2E-08 54.0 12.4 148 114-340 344-492 (644)
373 PF06433 Me-amine-dh_H: Methyl 97.6 0.032 6.9E-07 45.5 19.2 160 24-221 143-329 (342)
374 KOG2079 Vacuolar assembly/sort 97.5 0.0031 6.8E-08 57.9 13.3 103 28-132 99-202 (1206)
375 PF14870 PSII_BNR: Photosynthe 97.5 0.03 6.4E-07 45.5 17.6 139 14-156 143-285 (302)
376 KOG2395 Protein involved in va 97.5 0.0045 9.8E-08 52.5 12.7 121 31-156 349-481 (644)
377 PHA02713 hypothetical protein; 97.5 0.022 4.9E-07 51.0 18.1 92 28-124 304-408 (557)
378 KOG2444 WD40 repeat protein [G 97.4 0.00038 8.1E-09 52.3 5.6 144 73-301 33-181 (238)
379 COG3204 Uncharacterized protei 97.4 0.041 8.9E-07 43.5 16.8 76 103-214 85-160 (316)
380 KOG2079 Vacuolar assembly/sort 97.4 0.0032 7E-08 57.8 11.8 83 69-154 98-180 (1206)
381 PRK13616 lipoprotein LpqB; Pro 97.3 0.053 1.1E-06 48.8 18.1 130 16-156 350-506 (591)
382 PHA03098 kelch-like protein; P 97.3 0.12 2.6E-06 46.5 20.6 103 28-135 295-416 (534)
383 KOG2444 WD40 repeat protein [G 97.2 0.0013 2.9E-08 49.4 6.6 62 277-348 112-176 (238)
384 PF12894 Apc4_WD40: Anaphase-p 97.2 0.00086 1.9E-08 37.1 4.3 34 15-50 11-44 (47)
385 COG3490 Uncharacterized protei 97.2 0.067 1.5E-06 42.1 19.1 103 18-122 70-180 (366)
386 PF05096 Glu_cyclase_2: Glutam 97.2 0.08 1.7E-06 41.7 22.3 206 50-337 35-249 (264)
387 PF07995 GSDH: Glucose / Sorbo 97.1 0.12 2.5E-06 43.2 22.0 82 256-344 245-330 (331)
388 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0017 3.8E-08 35.9 4.9 32 104-136 12-43 (47)
389 KOG4441 Proteins containing BT 96.9 0.18 3.9E-06 45.4 18.1 110 19-135 326-454 (571)
390 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.31 6.8E-06 41.6 21.7 41 256-299 299-339 (415)
391 COG3386 Gluconolactonase [Carb 96.7 0.2 4.4E-06 41.0 15.4 136 18-156 113-264 (307)
392 PF05096 Glu_cyclase_2: Glutam 96.7 0.21 4.7E-06 39.4 22.1 118 16-142 45-166 (264)
393 PF10647 Gmad1: Lipoprotein Lp 96.3 0.4 8.7E-06 38.3 15.4 135 17-156 25-175 (253)
394 COG5276 Uncharacterized conser 96.3 0.4 8.7E-06 38.2 27.0 131 17-156 88-223 (370)
395 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 0.78 1.7E-05 41.1 20.6 55 39-93 272-338 (527)
396 KOG4499 Ca2+-binding protein R 96.3 0.35 7.7E-06 37.1 17.6 57 269-337 216-272 (310)
397 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.2 0.83 1.8E-05 40.9 21.9 109 29-142 70-198 (527)
398 PF12234 Rav1p_C: RAVE protein 96.2 0.39 8.5E-06 43.2 15.3 72 106-211 32-103 (631)
399 PHA03098 kelch-like protein; P 96.2 0.91 2E-05 40.9 18.3 65 68-135 293-368 (534)
400 PF10313 DUF2415: Uncharacteri 96.2 0.019 4.2E-07 30.8 4.4 32 16-47 1-34 (43)
401 KOG3630 Nuclear pore complex, 96.1 0.23 5E-06 46.8 13.5 150 59-246 101-264 (1405)
402 PHA02790 Kelch-like protein; P 96.1 0.97 2.1E-05 40.1 19.3 103 28-135 272-386 (480)
403 PF10168 Nup88: Nuclear pore c 96.0 0.3 6.5E-06 45.1 13.9 38 263-300 145-182 (717)
404 PF15390 DUF4613: Domain of un 96.0 0.52 1.1E-05 41.4 14.2 131 16-157 20-166 (671)
405 PF14727 PHTB1_N: PTHB1 N-term 96.0 0.91 2E-05 39.0 29.3 149 25-212 34-204 (418)
406 PF10168 Nup88: Nuclear pore c 95.9 1.5 3.3E-05 40.7 22.8 97 104-215 85-182 (717)
407 TIGR03074 PQQ_membr_DH membran 95.8 1.7 3.7E-05 40.7 23.4 115 28-142 194-353 (764)
408 COG5167 VID27 Protein involved 95.7 0.66 1.4E-05 40.0 13.7 123 28-156 479-613 (776)
409 KOG2280 Vacuolar assembly/sort 95.7 0.84 1.8E-05 41.3 14.7 68 4-74 72-143 (829)
410 PF02897 Peptidase_S9_N: Proly 95.6 1.4 3E-05 38.3 22.7 69 63-135 128-212 (414)
411 PF08728 CRT10: CRT10; InterP 95.6 1.9 4.1E-05 39.6 16.9 35 263-297 209-246 (717)
412 PF12234 Rav1p_C: RAVE protein 95.5 0.72 1.6E-05 41.6 14.0 103 28-132 41-155 (631)
413 KOG2377 Uncharacterized conser 95.3 0.52 1.1E-05 40.0 11.5 93 193-335 77-169 (657)
414 PRK13684 Ycf48-like protein; P 95.3 1.5 3.3E-05 36.7 17.0 136 15-156 172-312 (334)
415 PF15390 DUF4613: Domain of un 95.2 1.4 3E-05 38.9 14.1 137 59-242 20-172 (671)
416 PF14870 PSII_BNR: Photosynthe 95.1 1.5 3.3E-05 35.8 23.8 99 54-156 140-242 (302)
417 PF10313 DUF2415: Uncharacteri 95.0 0.14 3.1E-06 27.5 5.1 31 104-134 1-34 (43)
418 PF07569 Hira: TUP1-like enhan 95.0 0.2 4.3E-06 38.9 8.1 70 277-348 20-94 (219)
419 KOG3630 Nuclear pore complex, 94.8 0.68 1.5E-05 43.9 11.8 64 264-337 198-261 (1405)
420 COG3823 Glutamine cyclotransfe 94.8 1.3 2.8E-05 33.5 13.3 79 69-154 55-138 (262)
421 PF14727 PHTB1_N: PTHB1 N-term 94.7 2.5 5.4E-05 36.4 18.3 70 267-347 131-202 (418)
422 PF05694 SBP56: 56kDa selenium 94.6 2.5 5.5E-05 36.1 14.0 116 18-135 183-344 (461)
423 PF14655 RAB3GAP2_N: Rab3 GTPa 94.5 0.82 1.8E-05 39.1 11.2 87 54-142 303-407 (415)
424 TIGR02604 Piru_Ver_Nterm putat 94.5 2.7 5.8E-05 35.8 16.4 102 17-122 15-142 (367)
425 TIGR02604 Piru_Ver_Nterm putat 94.5 2.7 5.8E-05 35.8 15.5 71 59-132 14-98 (367)
426 KOG1916 Nuclear protein, conta 94.5 0.049 1.1E-06 49.7 4.0 129 11-146 128-282 (1283)
427 COG3490 Uncharacterized protei 94.5 2 4.4E-05 34.3 17.9 93 62-156 71-171 (366)
428 TIGR03118 PEPCTERM_chp_1 conse 94.2 2.5 5.5E-05 34.2 21.9 116 17-133 24-170 (336)
429 PF07569 Hira: TUP1-like enhan 94.1 0.54 1.2E-05 36.5 8.7 67 66-133 18-95 (219)
430 PF14761 HPS3_N: Hermansky-Pud 94.1 1.7 3.8E-05 33.1 10.9 104 29-135 29-165 (215)
431 PRK10115 protease 2; Provision 94.1 5.1 0.00011 37.4 27.6 112 16-132 127-254 (686)
432 KOG1900 Nuclear pore complex, 94.1 1.1 2.4E-05 43.3 11.8 93 35-128 96-202 (1311)
433 KOG2377 Uncharacterized conser 94.0 2.2 4.8E-05 36.5 12.2 92 63-156 27-122 (657)
434 KOG2247 WD40 repeat-containing 93.9 0.01 2.2E-07 50.1 -1.1 129 21-156 40-169 (615)
435 COG5276 Uncharacterized conser 93.8 2.9 6.3E-05 33.6 21.5 104 28-136 138-244 (370)
436 COG5167 VID27 Protein involved 93.8 1.7 3.7E-05 37.6 11.3 53 278-340 572-624 (776)
437 KOG2247 WD40 repeat-containing 93.6 0.0092 2E-07 50.3 -1.9 142 106-341 37-180 (615)
438 KOG1897 Damage-specific DNA bi 93.5 7.1 0.00015 37.0 27.4 118 15-133 530-659 (1096)
439 TIGR03074 PQQ_membr_DH membran 93.5 7 0.00015 36.9 18.1 68 28-96 260-352 (764)
440 PF08728 CRT10: CRT10; InterP 93.4 1.7 3.8E-05 39.7 11.5 104 28-132 114-245 (717)
441 COG4590 ABC-type uncharacteriz 93.3 0.44 9.6E-06 40.4 7.1 169 5-214 210-388 (733)
442 COG4257 Vgb Streptogramin lyas 92.9 4 8.7E-05 32.5 23.0 237 19-299 65-307 (353)
443 PF11715 Nup160: Nucleoporin N 92.5 0.89 1.9E-05 41.1 8.8 75 68-142 156-257 (547)
444 PHA02790 Kelch-like protein; P 92.5 7.4 0.00016 34.6 18.8 64 69-135 271-341 (480)
445 PF02333 Phytase: Phytase; In 92.4 6.1 0.00013 33.5 21.7 144 28-212 68-237 (381)
446 PF14583 Pectate_lyase22: Olig 92.4 6 0.00013 33.5 18.8 108 44-155 16-131 (386)
447 KOG4499 Ca2+-binding protein R 92.4 4.2 9.1E-05 31.5 16.9 102 30-136 73-193 (310)
448 PF14761 HPS3_N: Hermansky-Pud 92.2 4.2 9.1E-05 31.1 13.4 30 317-348 133-162 (215)
449 KOG1916 Nuclear protein, conta 91.5 0.16 3.4E-06 46.7 2.7 74 265-348 181-264 (1283)
450 COG4590 ABC-type uncharacteriz 91.4 1.4 3E-05 37.6 7.8 79 54-133 216-299 (733)
451 PF12768 Rax2: Cortical protei 91.1 7.2 0.00016 31.7 11.8 118 37-156 15-146 (281)
452 KOG4460 Nuclear pore complex, 91.1 7.1 0.00015 34.2 11.7 81 265-349 104-198 (741)
453 TIGR02276 beta_rpt_yvtn 40-res 91.0 1.4 3.1E-05 23.3 5.7 40 25-66 1-41 (42)
454 KOG2063 Vacuolar assembly/sort 90.8 7 0.00015 37.0 12.4 63 28-91 26-99 (877)
455 TIGR02276 beta_rpt_yvtn 40-res 90.8 1.5 3.3E-05 23.2 5.5 30 113-142 1-31 (42)
456 PF14781 BBS2_N: Ciliary BBSom 90.2 4.8 0.0001 28.2 12.7 72 109-214 4-83 (136)
457 PF10647 Gmad1: Lipoprotein Lp 90.0 8.6 0.00019 30.8 21.7 91 60-156 25-121 (253)
458 KOG2280 Vacuolar assembly/sort 89.7 17 0.00036 33.6 18.2 32 265-299 217-248 (829)
459 KOG1900 Nuclear pore complex, 89.5 5.8 0.00013 38.8 10.9 79 264-349 178-272 (1311)
460 KOG1897 Damage-specific DNA bi 89.0 22 0.00048 34.0 25.3 65 265-345 830-894 (1096)
461 PF07676 PD40: WD40-like Beta 88.7 1.7 3.7E-05 22.7 4.4 34 10-43 3-38 (39)
462 PLN00033 photosystem II stabil 88.5 15 0.00033 31.6 18.1 131 18-156 241-380 (398)
463 KOG1983 Tomosyn and related SN 88.5 21 0.00045 35.1 14.1 107 17-133 37-144 (993)
464 PRK10115 protease 2; Provision 88.3 23 0.00049 33.3 23.7 71 60-135 128-209 (686)
465 PF07250 Glyoxal_oxid_N: Glyox 88.1 12 0.00025 29.7 12.1 84 40-124 48-138 (243)
466 TIGR03548 mutarot_permut cycli 88.0 14 0.00031 30.7 22.6 22 193-214 171-196 (323)
467 PF02333 Phytase: Phytase; In 87.9 16 0.00034 31.1 20.8 86 255-348 199-289 (381)
468 PF10214 Rrn6: RNA polymerase 87.8 17 0.00037 34.6 13.0 115 16-134 146-277 (765)
469 PF12768 Rax2: Cortical protei 87.7 14 0.00029 30.1 11.5 60 263-335 35-105 (281)
470 smart00564 PQQ beta-propeller 87.6 1.8 3.9E-05 21.5 3.9 26 29-54 7-32 (33)
471 PF03022 MRJP: Major royal jel 86.7 16 0.00035 29.9 13.5 79 267-348 130-214 (287)
472 PF07995 GSDH: Glucose / Sorbo 86.1 19 0.00042 30.2 12.4 53 60-114 3-59 (331)
473 PF12657 TFIIIC_delta: Transcr 86.0 10 0.00022 28.3 8.7 31 104-134 86-122 (173)
474 PRK05560 DNA gyrase subunit A; 85.9 34 0.00073 32.9 25.3 105 28-133 498-622 (805)
475 PF12657 TFIIIC_delta: Transcr 85.5 13 0.00028 27.7 9.5 38 176-213 85-122 (173)
476 KOG1898 Splicing factor 3b, su 85.3 38 0.00082 32.9 18.1 112 39-154 854-984 (1205)
477 PF01011 PQQ: PQQ enzyme repea 85.1 3.9 8.4E-05 21.3 4.7 27 30-56 2-28 (38)
478 COG5308 NUP170 Nuclear pore co 85.1 28 0.0006 33.1 12.1 97 35-133 99-209 (1263)
479 PF14269 Arylsulfotran_2: Aryl 84.9 21 0.00044 29.5 12.6 39 18-57 146-184 (299)
480 COG5290 IkappaB kinase complex 84.8 35 0.00075 32.0 13.9 31 57-87 111-141 (1243)
481 PF14781 BBS2_N: Ciliary BBSom 84.3 12 0.00026 26.3 13.2 113 22-141 5-133 (136)
482 TIGR03547 muta_rot_YjhT mutatr 84.2 24 0.00052 29.7 22.5 22 69-90 63-95 (346)
483 PF08801 Nucleoporin_N: Nup133 83.9 29 0.00062 30.3 14.9 29 179-213 192-220 (422)
484 KOG3616 Selective LIM binding 83.7 13 0.00029 34.2 9.5 68 14-87 13-82 (1636)
485 PF01011 PQQ: PQQ enzyme repea 83.0 3.9 8.4E-05 21.3 3.9 26 117-142 2-27 (38)
486 PF03088 Str_synth: Strictosid 82.1 11 0.00024 24.4 7.2 40 78-121 35-74 (89)
487 COG3823 Glutamine cyclotransfe 82.1 21 0.00045 27.4 14.8 103 27-135 55-160 (262)
488 PLN02193 nitrile-specifier pro 81.7 38 0.00082 30.2 16.2 105 28-136 229-354 (470)
489 COG4257 Vgb Streptogramin lyas 81.6 26 0.00056 28.2 15.8 155 104-299 62-220 (353)
490 PF14269 Arylsulfotran_2: Aryl 81.4 29 0.00063 28.6 14.2 40 105-145 145-184 (299)
491 PF11715 Nup160: Nucleoporin N 81.4 4.1 9E-05 36.9 6.0 39 17-55 216-257 (547)
492 COG5290 IkappaB kinase complex 80.9 50 0.0011 31.1 12.3 92 63-157 251-347 (1243)
493 PF12341 DUF3639: Protein of u 80.7 4.8 0.0001 19.2 3.4 26 319-347 2-27 (27)
494 TIGR03606 non_repeat_PQQ dehyd 80.4 40 0.00087 29.7 13.8 56 14-70 28-90 (454)
495 PF03088 Str_synth: Strictosid 80.0 14 0.00029 24.0 7.0 51 285-346 33-85 (89)
496 PF03022 MRJP: Major royal jel 80.0 32 0.00069 28.2 17.5 58 39-96 35-104 (287)
497 PLN02193 nitrile-specifier pro 78.9 47 0.001 29.6 20.2 62 28-90 176-254 (470)
498 PF05935 Arylsulfotrans: Aryls 78.9 48 0.001 29.6 15.4 153 27-223 114-312 (477)
499 PF09826 Beta_propel: Beta pro 78.1 53 0.0011 29.7 21.3 95 38-136 304-413 (521)
500 TIGR03548 mutarot_permut cycli 77.9 40 0.00086 28.2 18.0 105 28-135 73-196 (323)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-52 Score=319.03 Aligned_cols=324 Identities=18% Similarity=0.203 Sum_probs=273.7
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
.+-..+.||.++|.|+.|+|+ +..|++|+.|.++++||+.+..+.++.++|..-|.+++|+|||+.||+|+.||+|++|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred eeccccCCCCCcEEEEEecCC-CceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 345567899999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEcc-----CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC-
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNP-----KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP- 159 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 159 (349)
|.++++ .....+.+|...|++++|.| ..++||+++.||.|+|||+..+.++..+. +|..+|+|+.|--++.
T Consensus 185 dpktg~--~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 185 DPKTGQ--QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEGLI 261 (480)
T ss_pred cCCCCC--cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCceE
Confidence 999875 44567888999999999976 46899999999999999999999999999 9999999999986653
Q ss_pred CCCCCCCC-----CCCcccc-----CCceeEEeecCcccc------------------------------cCCCCcEEEE
Q 018858 160 WEGLPENN-----GNAGQCY-----NPAFVHAIAIPDADM------------------------------LDKTNKICVV 199 (349)
Q Consensus 160 ~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~ 199 (349)
|.++.|.+ ...+.+. +...++.++.+.... ....+..|++
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 44555555 2222222 224566666552110 0113446999
Q ss_pred EcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee----cCceeeeeeeeecCCCcceEEEEEeee
Q 018858 200 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMF 275 (349)
Q Consensus 200 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~ 275 (349)
|+.|.++.+|+....+.+......++..+..+.||||++++|+ ++.|. +.....+.+.++++|-+.|+.++|+
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS-aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws-- 418 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS-ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS-- 418 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE-eecccceeeeeCCCcchhhhhhhccceeEEEEec--
Confidence 9999999999998777666666667788999999999999995 33333 3455778889999999999999999
Q ss_pred cCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 276 GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 276 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.|.++|++|+.|.+++|||+++. ++...+.+|.+.|.++.|+| ||+.+++++.|..+++|.
T Consensus 419 -aDsRLlVS~SkDsTLKvw~V~tk---------Kl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 419 -ADSRLLVSGSKDSTLKVWDVRTK---------KLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -cCccEEEEcCCCceEEEEEeeee---------eecccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 89999999999999999999997 67778889999999999988 899999999999999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-47 Score=297.95 Aligned_cols=280 Identities=18% Similarity=0.224 Sum_probs=254.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecC--CCEEEEEeCCCeEEEEEccCC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 90 (349)
+-+.+|..+.|+++ ++.|+||+.+|.+++|+..+...++++.+|...|.++.|+|. +..+|+|+.||++++|++.+.
T Consensus 173 gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRD-SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecC-CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 56789999999998 899999999999999999999999999999999999999996 568999999999999999864
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
.++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+.... +|...|.+++|+|
T Consensus 252 ---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~-------------- 313 (459)
T KOG0272|consen 252 ---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQP-------------- 313 (459)
T ss_pred ---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEecC--------------
Confidence 5677788899999999999999999999999999999999998887777 9999999999999
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee--
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ-- 248 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 248 (349)
+|.++++|+.|..-+|||++++.++..+.. +..+|..++|+|+|-.+|+ ++.|.
T Consensus 314 ----------------------DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lAT-gs~Dnt~ 369 (459)
T KOG0272|consen 314 ----------------------DGSLAATGGLDSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLAT-GSSDNTC 369 (459)
T ss_pred ----------------------CCceeeccCccchhheeecccCcEEEEecc-cccceeeEeECCCceEEee-cCCCCcE
Confidence 899999999999999999999999988887 6678999999999999996 33333
Q ss_pred --cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEe
Q 018858 249 --SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 326 (349)
Q Consensus 249 --~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (349)
+..+.-..++++.+|..-|+.+.|+| ..|.+|+|++.|++++||...+. .+++.+.+|.+.|.++++
T Consensus 370 kVWDLR~r~~ly~ipAH~nlVS~Vk~~p--~~g~fL~TasyD~t~kiWs~~~~---------~~~ksLaGHe~kV~s~Di 438 (459)
T KOG0272|consen 370 KVWDLRMRSELYTIPAHSNLVSQVKYSP--QEGYFLVTASYDNTVKIWSTRTW---------SPLKSLAGHEGKVISLDI 438 (459)
T ss_pred EEeeecccccceecccccchhhheEecc--cCCeEEEEcccCcceeeecCCCc---------ccchhhcCCccceEEEEe
Confidence 23334455788999999999999994 37899999999999999999998 788899999999999999
Q ss_pred ecCCCCcEEEeeCCCeEEEee
Q 018858 327 TPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 327 ~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++ +++++++++.|.++++|.
T Consensus 439 s~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 439 SP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cc-CCceEEEeccCceeeecc
Confidence 88 899999999999999995
No 3
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.5e-45 Score=264.71 Aligned_cols=270 Identities=16% Similarity=0.218 Sum_probs=238.8
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
.-+|++++.|-+|++|...+|.+..+++...+.|..+.+.|+++.||+++. ..|++||++++.. .++..+.+|...|+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-CceeEEeccCCceE
Confidence 468999999999999999999999999988999999999999999999885 5699999998754 47788899999999
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcc
Q 018858 108 QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDA 187 (349)
Q Consensus 108 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (349)
.+.|..+|+++++|++||+++|||++...+.+.++ +..+|+++..+|
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhp------------------------------- 134 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHP------------------------------- 134 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecC-------------------------------
Confidence 99999999999999999999999999988877777 789999999999
Q ss_pred cccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee------eeec---Cceeeeeee
Q 018858 188 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI------LDQS---GGKRLHLDY 258 (349)
Q Consensus 188 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~ 258 (349)
+...|++|..+|.|++||+....+...+.......+.+++..|||+++++..+ |+.. ....+.++.
T Consensus 135 -----nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~ 209 (311)
T KOG0315|consen 135 -----NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH 209 (311)
T ss_pred -----CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh
Confidence 67889999999999999999988777777777889999999999999986321 2211 122557778
Q ss_pred eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee
Q 018858 259 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 259 ~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
.++.|.+.+..+.+| |++++|+++|.|.+++||+.+... +....+.+|..-+...+|+. ||+||+|++
T Consensus 210 k~~ah~~~il~C~lS---Pd~k~lat~ssdktv~iwn~~~~~--------kle~~l~gh~rWvWdc~FS~-dg~YlvTas 277 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLS---PDVKYLATCSSDKTVKIWNTDDFF--------KLELVLTGHQRWVWDCAFSA-DGEYLVTAS 277 (311)
T ss_pred heecccceEEEEEEC---CCCcEEEeecCCceEEEEecCCce--------eeEEEeecCCceEEeeeecc-CccEEEecC
Confidence 899999999999999 999999999999999999999862 44556778999999999976 999999999
Q ss_pred CCCeEEEeeCC
Q 018858 339 TSKVVKVYSIS 349 (349)
Q Consensus 339 ~dg~i~iw~~~ 349 (349)
.|+.+++|+++
T Consensus 278 sd~~~rlW~~~ 288 (311)
T KOG0315|consen 278 SDHTARLWDLS 288 (311)
T ss_pred CCCceeecccc
Confidence 99999999985
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.6e-43 Score=260.37 Aligned_cols=290 Identities=13% Similarity=0.108 Sum_probs=250.5
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
++..++|+||.+.|.++.|+++ .+++++++.||.+.|||.-+....+.++....-|..++|+|+|+++|.|+-|+...|
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeEEEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 3456899999999999999999 899999999999999999988888888888999999999999999999999999999
Q ss_pred EEccCCC---cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 85 FDVHMPA---SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 85 wd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
|++.+.. ..+....+.+|.+.+.|..|-+ ..+|++++.|.++.+||+++++.+..|. +|.+.|.++++.|.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~---- 197 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPS---- 197 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCC----
Confidence 9998541 2244556889999999999987 5679999999999999999999999999 99999999999994
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
+++.+++|+-|+..++||++.+...+.+.. ++..|..+.|.|+|.-++
T Consensus 198 -------------------------------~~ntFvSg~cD~~aklWD~R~~~c~qtF~g-hesDINsv~ffP~G~afa 245 (343)
T KOG0286|consen 198 -------------------------------DGNTFVSGGCDKSAKLWDVRSGQCVQTFEG-HESDINSVRFFPSGDAFA 245 (343)
T ss_pred -------------------------------CCCeEEecccccceeeeeccCcceeEeecc-cccccceEEEccCCCeee
Confidence 789999999999999999999977776654 467899999999999998
Q ss_pred EeeeeeecCc----eeeeeeeeec--CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 242 EMEILDQSGG----KRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 242 ~~~~~~~~~~----~~~~~~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
.|+.|.+.+ +.-+.+..+. .-..+|++++|+ ..|++|.+|..|.++.+||.-.+ +....+.
T Consensus 246 -tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS---~SGRlLfagy~d~~c~vWDtlk~---------e~vg~L~ 312 (343)
T KOG0286|consen 246 -TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS---KSGRLLFAGYDDFTCNVWDTLKG---------ERVGVLA 312 (343)
T ss_pred -ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc---ccccEEEeeecCCceeEeecccc---------ceEEEee
Confidence 454444322 1111222222 234589999999 89999999999999999999887 6677888
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+|.+.|.++..+| ||--+++++.|..++||.
T Consensus 313 GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 313 GHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 9999999999988 898999999999999995
No 5
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.3e-45 Score=289.08 Aligned_cols=289 Identities=16% Similarity=0.205 Sum_probs=251.1
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
+.++.+.||++.|+++.|.|..+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 457789999999999999995489999999999999999876 8889999999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
||+++|+....+.. ...++|+.|+|++ +.|++|+.|+.|+.||+++++.++++. .|-+.|..+.|-+
T Consensus 285 wDtETG~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~------- 352 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVD------- 352 (503)
T ss_pred eccccceEEEEEec----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEcc-------
Confidence 99999865544443 3578999999998 889999999999999999999999999 8999999999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE-
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE- 242 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (349)
+++.+++.+.|+.++||+.+.+-.+........-...++..+|+++++++
T Consensus 353 -----------------------------~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ 403 (503)
T KOG0282|consen 353 -----------------------------EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ 403 (503)
T ss_pred -----------------------------CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence 89999999999999999999876666666666667788999999999985
Q ss_pred -----eeeeeecCceeeeeeeeecCCC--cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 243 -----MEILDQSGGKRLHLDYSVGGHT--AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 243 -----~~~~~~~~~~~~~~~~~~~~h~--~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
.+.............+.+.+|. +.-..+.|| |||.+|++|+.||.+.+||.++. +++..+.
T Consensus 404 s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS---pDG~~l~SGdsdG~v~~wdwkt~---------kl~~~lk 471 (503)
T KOG0282|consen 404 SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS---PDGRTLCSGDSDGKVNFWDWKTT---------KLVSKLK 471 (503)
T ss_pred ccCceEEEEecccccccCHhhhhcceeccCceeeEEEc---CCCCeEEeecCCccEEEeechhh---------hhhhccc
Confidence 1112222222344456677875 445677888 99999999999999999999997 7888899
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.|...++.+.|+|.....+|+|+.||.|++|+
T Consensus 472 ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 472 AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999998888999999999999996
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-43 Score=257.34 Aligned_cols=257 Identities=19% Similarity=0.258 Sum_probs=223.4
Q ss_pred CCccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-----CcEEEEeecCCCCeEEEEEecCCCEEEE
Q 018858 1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-----KDVQLVTDVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 1 m~~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 75 (349)
|+++..+..+|++|++.|+.++..+.+.+.+++++.|..+.+|++.. |..++.+.+|...|..+..+++|++.++
T Consensus 1 ~~e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 1 MQEQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred CchhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 67778888999999999999999998889999999999999999753 5668899999999999999999999999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
++.|+.+++||+.++ +....+.+|...|.+++|+++.+++++|+.|.+|++|++............+.+.|.|+.|+
T Consensus 81 ~swD~~lrlWDl~~g---~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATG---ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred ccccceEEEEEecCC---cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence 999999999999986 45567788999999999999999999999999999999887665554442337889999999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
|+ ++..++++++.|++|++||+++.
T Consensus 158 P~----------------------------------~~~p~Ivs~s~DktvKvWnl~~~--------------------- 182 (315)
T KOG0279|consen 158 PN----------------------------------ESNPIIVSASWDKTVKVWNLRNC--------------------- 182 (315)
T ss_pred CC----------------------------------CCCcEEEEccCCceEEEEccCCc---------------------
Confidence 93 13778999999999999999974
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
+....+.+|.+.++.++++ |||..+++|+.||.+.+||++.++ .+ ...
T Consensus 183 -------------------~l~~~~~gh~~~v~t~~vS---pDGslcasGgkdg~~~LwdL~~~k---------~l-ysl 230 (315)
T KOG0279|consen 183 -------------------QLRTTFIGHSGYVNTVTVS---PDGSLCASGGKDGEAMLWDLNEGK---------NL-YSL 230 (315)
T ss_pred -------------------chhhccccccccEEEEEEC---CCCCEEecCCCCceEEEEEccCCc---------ee-Eec
Confidence 5667888999999999999 999999999999999999999973 33 445
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.|...|++++|+|+. +.+.+..+..|+|||+.
T Consensus 231 ~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 231 EAFDIVNSLCFSPNR--YWLCAATATSIKIWDLE 262 (315)
T ss_pred cCCCeEeeEEecCCc--eeEeeccCCceEEEecc
Confidence 788899999999843 55555566679999974
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4e-42 Score=253.79 Aligned_cols=260 Identities=19% Similarity=0.262 Sum_probs=213.9
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
.+..++.|+||...|..+..+++ +++.++++.|+++++||+.+++..+.|.+|...|.+++|+++...|++|+.|++|+
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred cCceeeeeeccceEecceEEccC-CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceee
Confidence 46789999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
+|+.... +...+.. ..+.+.|.|+.|+|+ ..+|++++.|++|++||+++.+....+. +|.+.++.++++|
T Consensus 131 lwnt~g~-ck~t~~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSp----- 202 (315)
T KOG0279|consen 131 LWNTLGV-CKYTIHE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSP----- 202 (315)
T ss_pred eeeeccc-EEEEEec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECC-----
Confidence 9998753 2222222 122688999999998 6899999999999999999999989998 9999999999999
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
||.++++|+.||.+.+||++.+
T Consensus 203 -------------------------------DGslcasGgkdg~~~LwdL~~~--------------------------- 224 (315)
T KOG0279|consen 203 -------------------------------DGSLCASGGKDGEAMLWDLNEG--------------------------- 224 (315)
T ss_pred -------------------------------CCCEEecCCCCceEEEEEccCC---------------------------
Confidence 8999999999999999999975
Q ss_pred EeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 242 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
+.++.+ +|...|++++|+ |+...|+ +..+..|+|||+.+...+........-.....-....
T Consensus 225 -------------k~lysl-~a~~~v~sl~fs---pnrywL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 225 -------------KNLYSL-EAFDIVNSLCFS---PNRYWLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred -------------ceeEec-cCCCeEeeEEec---CCceeEe-eccCCceEEEeccchhhhhhccccccccccccCCcEE
Confidence 333444 477899999999 7755554 4456679999999985443211100000111123345
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+++|++ +|..|+++-.|+.|++|.+.
T Consensus 287 lslaws~-dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 287 LSLAWSA-DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEcC-CCcEEEeeecCCcEEEEEee
Confidence 6788977 99999999999999999863
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-43 Score=275.04 Aligned_cols=247 Identities=15% Similarity=0.156 Sum_probs=220.6
Q ss_pred cCCCCeeeeCCceeeeEEEEecC-CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+...+++|.+|...|.++.|+|. ++..++||+.||++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+-
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccch
Confidence 45788999999999999999998 46789999999999999999989999999999999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
++||++++.. +-...+|...|.+++|+|||.++++|+.|..-+|||++++.++..+. +|..+|.+++|+|
T Consensus 286 RlWD~~tk~E---lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsP------ 355 (459)
T KOG0272|consen 286 RLWDLETKSE---LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSP------ 355 (459)
T ss_pred hhcccccchh---hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeECC------
Confidence 9999998643 34456789999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc-ccEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV-NIRDA 241 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 241 (349)
+|..|++|+.|++++|||++...... ....+.+.+..+.|+|+ |.+|+
T Consensus 356 ------------------------------NGy~lATgs~Dnt~kVWDLR~r~~ly-~ipAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 356 ------------------------------NGYHLATGSSDNTCKVWDLRMRSELY-TIPAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred ------------------------------CceEEeecCCCCcEEEeeecccccce-ecccccchhhheEecccCCeEEE
Confidence 89999999999999999999866633 33445678899999994 55555
Q ss_pred Eeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 242 EMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 242 ~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
+++.|.. ....+.+++.+.||.+.|.++.++ +++.+++|++.|+++++|.
T Consensus 405 -TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis---~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 405 -TASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS---PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -EcccCcceeeecCCCcccchhhcCCccceEEEEec---cCCceEEEeccCceeeecc
Confidence 5555544 344778899999999999999999 8999999999999999995
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.4e-42 Score=286.25 Aligned_cols=245 Identities=19% Similarity=0.292 Sum_probs=222.4
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-------------------------------EEEEeecCC
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------------------------------VQLVTDVGN 58 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-------------------------------~~~~~~~~~ 58 (349)
++..-...++|..|+++ +.+||.|-.|..|++|.+...+ ...++.+|.
T Consensus 373 T~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 33334467999999998 8899999999999999987311 123567899
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY 138 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 138 (349)
++|....|+|+.++|+++++|+++++|.+.+. ..+-.+.+|..+|+++.|+|.|-+||+++.|++-++|......++
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence 99999999999999999999999999999974 455667789999999999999999999999999999999999999
Q ss_pred ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee
Q 018858 139 KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218 (349)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 218 (349)
+.+. +|.+.|.|+.|+| +.+++++|+.|.++++||..++
T Consensus 529 Rifa-ghlsDV~cv~FHP------------------------------------Ns~Y~aTGSsD~tVRlWDv~~G---- 567 (707)
T KOG0263|consen 529 RIFA-GHLSDVDCVSFHP------------------------------------NSNYVATGSSDRTVRLWDVSTG---- 567 (707)
T ss_pred hhhc-ccccccceEEECC------------------------------------cccccccCCCCceEEEEEcCCC----
Confidence 9999 9999999999999 8999999999999999999986
Q ss_pred ecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 219 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
..++.+.||.++|.+++|+ |+|++|++|++||.|.+||+.+
T Consensus 568 ------------------------------------~~VRiF~GH~~~V~al~~S---p~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 568 ------------------------------------NSVRIFTGHKGPVTALAFS---PCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred ------------------------------------cEEEEecCCCCceEEEEEc---CCCceEeecccCCcEEEEEcCC
Confidence 5677889999999999999 8999999999999999999999
Q ss_pred CcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 299 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+ .++..+.+|.+.|.++.|+. +|..|++++.|.+|++||+
T Consensus 609 ~---------~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 609 G---------SLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDL 648 (707)
T ss_pred C---------cchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEc
Confidence 8 78889999999999999977 8999999999999999997
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-39 Score=259.36 Aligned_cols=320 Identities=17% Similarity=0.170 Sum_probs=246.9
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee---cCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD---VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
..+++.|..-|.|+.|+|| |.+++|++.||.+.+||=.+++.+..+. +|.+.|.+++|+||+..+++++.|.+++|
T Consensus 183 k~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred eecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 3456789999999999999 8999999999999999999999999888 89999999999999999999999999999
Q ss_pred EEccCCC----------------------------------------cccceeeccCcccceEEEEEccCCCEEEEEcCC
Q 018858 85 FDVHMPA----------------------------------------SWRPLESYNYNKEEINQIVCNPKSSFLACADDG 124 (349)
Q Consensus 85 wd~~~~~----------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 124 (349)
||+.+.+ ...++..+.+|...|++++.+|++++|++|+.|
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 9997653 112334456888999999999999999999999
Q ss_pred CcEEEEEcCCceEeceeccccccceeEEEEccCCCCC-CCCC---------------------CCCCCccc---------
Q 018858 125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE-GLPE---------------------NNGNAGQC--------- 173 (349)
Q Consensus 125 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~---------------------~~~~~~~~--------- 173 (349)
|.|.-|+..++..-+.....|...|.+++-+..+... ...| ...+.+..
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 9999999988766444322677777777666522111 0000 00000000
Q ss_pred ---------cC----------CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee-ecCCCCCCccceeee
Q 018858 174 ---------YN----------PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQST 233 (349)
Q Consensus 174 ---------~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~ 233 (349)
++ .....+++++| ++..+++|+.||.|++|.+....... .....+...+..+++
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~------~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay 495 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSP------DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY 495 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcC------CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEE
Confidence 00 01234566666 89999999999999999999865433 355567789999999
Q ss_pred eccccEEEEeee------eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc
Q 018858 234 SKVNIRDAEMEI------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 234 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 307 (349)
|||+.+|++... ++...... ......-|.+.|++++|+ |+...+|||+.|..|.||+++...
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWs---P~n~~vATGSlDt~Viiysv~kP~------- 563 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWS---PNNKLVATGSLDTNVIIYSVKKPA------- 563 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeC---CCceEEEeccccceEEEEEccChh-------
Confidence 999999996221 22221111 122333489999999999 899999999999999999999864
Q ss_pred cceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 308 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+.....|...|+.+.|- +...|++.+.|..|++|++.
T Consensus 564 -~~i~iknAH~~gVn~v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 564 -KHIIIKNAHLGGVNSVAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -hheEeccccccCceeEEEe--cCceEEeccCcceeEEeccc
Confidence 4455667799999999995 45589999999999999874
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.8e-41 Score=255.58 Aligned_cols=247 Identities=16% Similarity=0.247 Sum_probs=227.5
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
++-+.+++|.+.|.|+++.|. ...|+||+.|++|+|||+.++++..++.+|-..|..+++++-..|+++++.|+.|+-|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 566788999999999999998 7999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|++.+ +.+..+.+|-..|.|++.+|.-+.|++|+.|..+++||+++...+..+. +|..+|..+.+.|
T Consensus 221 DLe~n---kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~--------- 287 (460)
T KOG0285|consen 221 DLEYN---KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQP--------- 287 (460)
T ss_pred echhh---hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeec---------
Confidence 99964 5667788899999999999999999999999999999999999999999 9999999999998
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
.+..+++|+.|++|++||++.+
T Consensus 288 ---------------------------~dpqvit~S~D~tvrlWDl~ag------------------------------- 309 (460)
T KOG0285|consen 288 ---------------------------TDPQVITGSHDSTVRLWDLRAG------------------------------- 309 (460)
T ss_pred ---------------------------CCCceEEecCCceEEEeeeccC-------------------------------
Confidence 5667899999999999999986
Q ss_pred eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEE
Q 018858 246 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 325 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 325 (349)
+...++..|...+.+++.+ |....+|+++.| .|+-|++..+ ..+..+.+|...|++++
T Consensus 310 ---------kt~~tlt~hkksvral~lh---P~e~~fASas~d-nik~w~~p~g---------~f~~nlsgh~~iintl~ 367 (460)
T KOG0285|consen 310 ---------KTMITLTHHKKSVRALCLH---PKENLFASASPD-NIKQWKLPEG---------EFLQNLSGHNAIINTLS 367 (460)
T ss_pred ---------ceeEeeecccceeeEEecC---CchhhhhccCCc-cceeccCCcc---------chhhccccccceeeeee
Confidence 5556788899999999999 888899999987 4999999998 67777889999999999
Q ss_pred eecCCCCcEEEeeCCCeEEEeeC
Q 018858 326 TTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 326 ~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.++ |+ ++++|++.|.+.+||.
T Consensus 368 ~ns-D~-v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 368 VNS-DG-VLVSGGDNGSIMFWDW 388 (460)
T ss_pred ecc-Cc-eEEEcCCceEEEEEec
Confidence 977 54 8999999999999985
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=239.51 Aligned_cols=297 Identities=17% Similarity=0.160 Sum_probs=227.5
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---EEEEe-ecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
....+.+++|++.|..++|+|-.|.+||+++.|..|++|+...+. +...+ .+|+..|.+++|+|.|++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 456789999999999999999646699999999999999988532 23333 36999999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC---ceEeceeccccccceeEEEEccC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---HCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
++.||.-..+ ..+.+..+.+|+.+|.+++|+++|++||++++|+.|.||.+.. -++...+. .|...|..+.|+|
T Consensus 84 t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHP- 160 (312)
T KOG0645|consen 84 TVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHP- 160 (312)
T ss_pred eEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcC-
Confidence 9999986644 4577888999999999999999999999999999999999874 35677888 8999999999999
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-c--eeeeecCCCCCCccceeeee
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-E--LNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~--~~~~~~~~~~~~~~~~~~~~ 234 (349)
...+|++++.|.+|++|+-.. . .+...+. ....-+.+++|+
T Consensus 161 -----------------------------------t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~ 204 (312)
T KOG0645|consen 161 -----------------------------------TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFD 204 (312)
T ss_pred -----------------------------------CcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEec
Confidence 788999999999999998772 2 1222222 223467778888
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeec-CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
+.|..++ ....|.+...- .....+. .|...++.+.|. ...|++++.|+.|++|.-......... ..+...
T Consensus 205 ~~G~rl~-s~sdD~tv~Iw-~~~~~~~~~~sr~~Y~v~W~-----~~~IaS~ggD~~i~lf~~s~~~d~p~~--~l~~~~ 275 (312)
T KOG0645|consen 205 NIGSRLV-SCSDDGTVSIW-RLYTDLSGMHSRALYDVPWD-----NGVIASGGGDDAIRLFKESDSPDEPSW--NLLAKK 275 (312)
T ss_pred CCCceEE-EecCCcceEee-eeccCcchhcccceEeeeec-----ccceEeccCCCEEEEEEecCCCCCchH--HHHHhh
Confidence 8887776 33333332221 1112232 366778888774 347888888888888876643111100 012224
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
...|...|++++|.|...+.|+++++||.|++|.+.
T Consensus 276 ~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 276 EGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 456999999999999556799999999999999863
No 13
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-40 Score=257.49 Aligned_cols=294 Identities=13% Similarity=0.104 Sum_probs=235.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC---cEEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK---DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
..+..+.|..|++.|+-+.|+++ |++||+++.|.+..+|++... +..+++.+|..+|..+.||||.+++++|+.+.
T Consensus 213 p~qt~qil~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 34567889999999999999998 999999999999999987543 34788899999999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
.+.+||+.++........- +...+.+.+|.||+..+++|+.|+.+..||+... .+...+......|.+++..+
T Consensus 292 ~~~lwDv~tgd~~~~y~~~--~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~---- 364 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSG--LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITY---- 364 (519)
T ss_pred heeeccCCcchhhhhcccC--cCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcC----
Confidence 9999999998654443332 4567899999999999999999999999998643 34444412234577888877
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
||+++++.+.|..|++|+.++..... ......++.+.+.|.|++++
T Consensus 365 --------------------------------Dgk~vl~v~~d~~i~l~~~e~~~dr~--lise~~~its~~iS~d~k~~ 410 (519)
T KOG0293|consen 365 --------------------------------DGKYVLLVTVDKKIRLYNREARVDRG--LISEEQPITSFSISKDGKLA 410 (519)
T ss_pred --------------------------------CCcEEEEEecccceeeechhhhhhhc--cccccCceeEEEEcCCCcEE
Confidence 89999999999999999998653332 22345678999999999999
Q ss_pred EEeee---eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 241 AEMEI---LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
++.-. ...+.......+..+.||...-.-|.-.--+.+..++++||+|+.|+||+..++ +++..+.+|
T Consensus 411 LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---------kll~~LsGH 481 (519)
T KOG0293|consen 411 LVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---------KLLAVLSGH 481 (519)
T ss_pred EEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---------ceeEeecCC
Confidence 86321 122233344666778888764333321111145689999999999999999998 888999999
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
...|++++|+|.+...+|++|+||+|+||..
T Consensus 482 s~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 482 SKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred cceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 9999999999999999999999999999975
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-40 Score=252.67 Aligned_cols=267 Identities=17% Similarity=0.253 Sum_probs=235.0
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
.+++..+.|+||++.|..++|+.. |+++++++.|-.+++||.++ .+++..+.+|...|.+++|-|.|++|++++.|.+
T Consensus 138 ~tg~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t 216 (406)
T KOG0295|consen 138 ETGELERSLRGHTDSVFDISFDAS-GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT 216 (406)
T ss_pred cchhhhhhhhccccceeEEEEecC-ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence 467788999999999999999998 89999999999999999986 4567788899999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
|+.|++.++ ..+.++++|...|..++.+.||..+++++.|.+|++|-+.++++...++ .|.-+|.+++|.|...+-
T Consensus 217 ik~We~~tg---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 217 IKAWECDTG---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYP 292 (406)
T ss_pred eeEEecccc---eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCc
Confidence 999999986 5667888899999999999999999999999999999999999999999 999999999999953221
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
...+.... +..+.++++++.|++|++||+.++
T Consensus 293 ~i~~at~~---------------------~~~~~~l~s~SrDktIk~wdv~tg--------------------------- 324 (406)
T KOG0295|consen 293 SISEATGS---------------------TNGGQVLGSGSRDKTIKIWDVSTG--------------------------- 324 (406)
T ss_pred chhhccCC---------------------CCCccEEEeecccceEEEEeccCC---------------------------
Confidence 11110000 113578999999999999999986
Q ss_pred EeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 242 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
.++.++.+|...|..++|+ |.|+||+++.+|+++++||+++. ..+.....|...+
T Consensus 325 -------------~cL~tL~ghdnwVr~~af~---p~Gkyi~ScaDDktlrvwdl~~~---------~cmk~~~ah~hfv 379 (406)
T KOG0295|consen 325 -------------MCLFTLVGHDNWVRGVAFS---PGGKYILSCADDKTLRVWDLKNL---------QCMKTLEAHEHFV 379 (406)
T ss_pred -------------eEEEEEecccceeeeeEEc---CCCeEEEEEecCCcEEEEEeccc---------eeeeccCCCccee
Confidence 7888999999999999999 89999999999999999999998 6777788999999
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++++|+. +.-++++|+-|..+++|.-
T Consensus 380 t~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 380 TSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEecCC-CCceEEeccccceeeeeec
Confidence 9999966 5559999999999999964
No 15
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-40 Score=253.55 Aligned_cols=275 Identities=16% Similarity=0.193 Sum_probs=227.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEEec-----CCCEEEEEe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKS-----GNEDIIYVS 77 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~l~~~~ 77 (349)
+..+.++.++|...|.|++|+|| ++.||+|+.||+|++||.+++++ ...+.+|...|++++|.| ..++||+++
T Consensus 146 TeTp~~t~KgH~~WVlcvawsPD-gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 146 TETPLFTCKGHKNWVLCVAWSPD-GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred CCCcceeecCCccEEEEEEECCC-cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc
Confidence 45678999999999999999999 99999999999999999998876 578899999999999965 567899999
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
.||.|+|||+..+ ..+..+.+|..+|+|+.|-.+ .++++|+.|++|++|+...|++.+.++ +|...|+.++.+-+
T Consensus 225 kDg~vrIWd~~~~---~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTd 299 (480)
T KOG0271|consen 225 KDGSVRIWDTKLG---TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTD 299 (480)
T ss_pred CCCCEEEEEccCc---eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccch
Confidence 9999999999865 455667789999999999754 589999999999999999999999999 99999999988843
Q ss_pred -----CCCC---------------------------------CCCCCC----C------CCcc-ccCCceeEEeecCccc
Q 018858 158 -----KPWE---------------------------------GLPENN----G------NAGQ-CYNPAFVHAIAIPDAD 188 (349)
Q Consensus 158 -----~~~~---------------------------------~~~~~~----~------~~~~-~~~~~~~~~~~~~~~~ 188 (349)
|.+. ++.+.+ . +... .-+..-++.+.|+|
T Consensus 300 y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-- 377 (480)
T KOG0271|consen 300 YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-- 377 (480)
T ss_pred hhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC--
Confidence 1111 111111 0 0000 01234578889999
Q ss_pred ccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC----ceeeeeeeeecCCC
Q 018858 189 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHT 264 (349)
Q Consensus 189 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~ 264 (349)
|++++|+++.|..|++||.++++.+..+.++ -..+..++|+.|.+.++ +++.|.++ ....++...+.+|.
T Consensus 378 ----d~r~IASaSFDkSVkLW~g~tGk~lasfRGH-v~~VYqvawsaDsRLlV-S~SkDsTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 378 ----DGRYIASASFDKSVKLWDGRTGKFLASFRGH-VAAVYQVAWSADSRLLV-SGSKDSTLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred ----CccEEEEeecccceeeeeCCCcchhhhhhhc-cceeEEEEeccCccEEE-EcCCCceEEEEEeeeeeecccCCCCC
Confidence 9999999999999999999999888777654 35678899999999988 45544433 33556677889999
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
..|.++.|+ |||..+++|+.|..+++|.
T Consensus 452 DEVf~vDws---pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 DEVFAVDWS---PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEec---CCCceeecCCCceEEEeec
Confidence 999999999 9999999999999999995
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-40 Score=252.49 Aligned_cols=254 Identities=19% Similarity=0.303 Sum_probs=231.4
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
.+.+.+.+|..+|+.+-|+|+ -.++++++.|++|++||..+++....+++|...|..++|+..|+++++++.|-.+++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 456778899999999999998 7889999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|..+ ....++...+|+..|.+++|-|.|.++++++.|.+|+.|++.++-++.++. +|...|.-++.+.
T Consensus 178 d~~~--~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~--------- 245 (406)
T KOG0295|consen 178 DFDT--FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQ--------- 245 (406)
T ss_pred eHHH--HHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecC---------
Confidence 9985 256667777888999999999999999999999999999999999999999 9999999999888
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
||.++++++.|.+|++|-..+.
T Consensus 246 ---------------------------DGti~As~s~dqtl~vW~~~t~------------------------------- 267 (406)
T KOG0295|consen 246 ---------------------------DGTIIASCSNDQTLRVWVVATK------------------------------- 267 (406)
T ss_pred ---------------------------CeeEEEecCCCceEEEEEeccc-------------------------------
Confidence 8999999999999999999874
Q ss_pred eeecCceeeeeeeeecCCCcceEEEEEeeec--C----------CccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 246 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFG--E----------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~--~----------~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
.+...++.|+.+|.+++|.|.. | .+.++.+++.|++|++||+.++ .++..
T Consensus 268 ---------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---------~cL~t 329 (406)
T KOG0295|consen 268 ---------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---------MCLFT 329 (406)
T ss_pred ---------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---------eEEEE
Confidence 4556778888888899887621 1 2369999999999999999999 78889
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+|.+.|..++|+| .|+||+++.+|+++++||+.
T Consensus 330 L~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred EecccceeeeeEEcC-CCeEEEEEecCCcEEEEEec
Confidence 999999999999998 89999999999999999974
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.9e-39 Score=254.79 Aligned_cols=250 Identities=23% Similarity=0.306 Sum_probs=219.7
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC----
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA---- 91 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---- 91 (349)
..|++++|+.+ |..||+|+.||.+++|+.. +.++.++..|.+||.++.|+..|.||++++.|+++.+||..++.
T Consensus 236 kdVT~L~Wn~~-G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 236 KDVTSLDWNND-GTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CCcceEEecCC-CCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 57999999998 9999999999999999965 67788899999999999999999999999999999999986542
Q ss_pred ----------------------------------cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 92 ----------------------------------SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 92 ----------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
...+..++.+|.++|.++.|+|.+.+|++++.|++++||.......
T Consensus 314 f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred eeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence 2245566778999999999999999999999999999999998888
Q ss_pred eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee
Q 018858 138 YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 217 (349)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 217 (349)
...+. .|...|+.+.|+|.+.-.. .| ..+..+++++.|++|++||+..+
T Consensus 394 ~~~l~-~Hskei~t~~wsp~g~v~~----------------------n~-----~~~~~l~sas~dstV~lwdv~~g--- 442 (524)
T KOG0273|consen 394 VHDLQ-AHSKEIYTIKWSPTGPVTS----------------------NP-----NMNLMLASASFDSTVKLWDVESG--- 442 (524)
T ss_pred hhhhh-hhccceeeEeecCCCCccC----------------------CC-----cCCceEEEeecCCeEEEEEccCC---
Confidence 89999 9999999999999654322 11 16788999999999999999975
Q ss_pred eecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 218 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
.+++.+..|..+|++++|+ |+|+|+|+|+.||.|.+|+.+
T Consensus 443 -------------------------------------v~i~~f~kH~~pVysvafS---~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 443 -------------------------------------VPIHTLMKHQEPVYSVAFS---PNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred -------------------------------------ceeEeeccCCCceEEEEec---CCCcEEEecCCCCeeEecccc
Confidence 6778898999999999999 999999999999999999999
Q ss_pred CCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 298 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++ ++.+...+ .+.|..++|+. +|.+|..+-.|+.+++-|++
T Consensus 483 ~~---------~l~~s~~~-~~~Ifel~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 483 TG---------KLVKSYQG-TGGIFELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ch---------heeEeecC-CCeEEEEEEcC-CCCEEEEEecCCCceEEEec
Confidence 97 55555544 55699999987 77889999999999998874
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.9e-40 Score=272.78 Aligned_cols=240 Identities=21% Similarity=0.339 Sum_probs=214.1
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
....++|.||+++|..+.|+|+ .++|++++.|+++++|.+.+...+..+++|..||..+.|+|.|-|+|+++.|++-++
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd-~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPD-RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred CceeEEeecCCCceeeeeeccc-ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 3456779999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
|.... ..++..+.+|-..|.|+.|+|++.++++|+.|.+|++||+.+|..++.|. +|.++|.+++|+|
T Consensus 520 Ws~d~---~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp-------- 587 (707)
T KOG0263|consen 520 WSTDH---NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSP-------- 587 (707)
T ss_pred eeccc---CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcC--------
Confidence 99885 46777888899999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
+|++|++|+.||.|.+||+.++
T Consensus 588 ----------------------------~Gr~LaSg~ed~~I~iWDl~~~------------------------------ 609 (707)
T KOG0263|consen 588 ----------------------------CGRYLASGDEDGLIKIWDLANG------------------------------ 609 (707)
T ss_pred ----------------------------CCceEeecccCCcEEEEEcCCC------------------------------
Confidence 8999999999999999999985
Q ss_pred eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee---------------cccccc
Q 018858 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ---------------TSINND 309 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---------------~~~~~~ 309 (349)
.++..+.+|.+.|+++.|+ .+|..||+|+.|+.|++||+....... ......
T Consensus 610 ----------~~v~~l~~Ht~ti~SlsFS---~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (707)
T KOG0263|consen 610 ----------SLVKQLKGHTGTIYSLSFS---RDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSL 676 (707)
T ss_pred ----------cchhhhhcccCceeEEEEe---cCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcc
Confidence 6778889999999999999 999999999999999999987643320 001123
Q ss_pred eeeeccccccceEEEEeec
Q 018858 310 LLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~ 328 (349)
.+..+.....+|..+.|.-
T Consensus 677 llgs~~tK~tpv~~l~Ftr 695 (707)
T KOG0263|consen 677 LLGSFYTKNTPVVGLHFTR 695 (707)
T ss_pred eeeeeeecCceEEEEEEec
Confidence 4455555666888888855
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.2e-38 Score=242.34 Aligned_cols=289 Identities=16% Similarity=0.202 Sum_probs=237.0
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
..+..|..|+++|++++.+|+ .++++||+.|..-.+|++.++.....+.+|+..|+++.|+.+|.+||+|..+|.|+||
T Consensus 55 dS~~tF~~H~~svFavsl~P~-~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPN-NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred cceeehhhcCCceEEEEeCCC-CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 457789999999999999996 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
...++.....+. ..-..+.-+.|+|.+..|+.|+.||.+..|.+.++...+.+. +|..++++=.|.|
T Consensus 134 ~~stg~~~~~~~---~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~p--------- 200 (399)
T KOG0296|consen 134 KVSTGGEQWKLD---QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIP--------- 200 (399)
T ss_pred EcccCceEEEee---cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccC---------
Confidence 999876544443 123678889999999999999999999999999888888898 9999999999999
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE---
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE--- 242 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 242 (349)
+|+.++++..||+|++|++.+++...............+.++..+..+..
T Consensus 201 ---------------------------dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 201 ---------------------------DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred ---------------------------CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 89999999999999999999988776655333222233322222222211
Q ss_pred -------------------------------------------------eeeeeecCce---eeeeeeeecCCCcceEEE
Q 018858 243 -------------------------------------------------MEILDQSGGK---RLHLDYSVGGHTAAASCV 270 (349)
Q Consensus 243 -------------------------------------------------~~~~~~~~~~---~~~~~~~~~~h~~~i~~i 270 (349)
.|..|+.+.. ....++....|...|..+
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL 333 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence 1111111110 001112233588899999
Q ss_pred EEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 271 AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.|. + ..+|++++.||.|+.||.+++ .++..+.+|...|..+++.| +.++++|+|.|++.+||+++
T Consensus 334 ~w~---~-t~~l~t~c~~g~v~~wDaRtG---------~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWL---N-TDYLLTACANGKVRQWDARTG---------QLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEc---C-cchheeeccCceEEeeecccc---------ceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 998 5 689999999999999999999 88999999999999999988 88899999999999999874
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-38 Score=236.57 Aligned_cols=286 Identities=18% Similarity=0.195 Sum_probs=234.6
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC-CCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+.-.+.+|++.|..+.|+|+ +..|++|+.|..|.+|++. ..+....+++|.+.|..+.|.++++.|++++.|.+|+.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 345567899999999999997 8999999999999999954 44557888999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
||.++++. +..++.|..-|..+.-+.-| .++.+++.|+++++||+|+...++++. ....++++.|..
T Consensus 117 wD~~tG~~---~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d------- 184 (338)
T KOG0265|consen 117 WDAETGKR---IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKD------- 184 (338)
T ss_pred Eeccccee---eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecc-------
Confidence 99998754 45566677888888754445 456788899999999999999988886 567899999998
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.+..+.+|+-|+.|++||++.+.......+. ...|..++.+++|.++.+.
T Consensus 185 -----------------------------~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~~gs~llsn 234 (338)
T KOG0265|consen 185 -----------------------------TSDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSRYGSFLLSN 234 (338)
T ss_pred -----------------------------cccceeeccccCceeeeccccCcceEEeecc-cCceeeEEeccCCCccccc
Confidence 7888999999999999999987666655443 5678899999999999851
Q ss_pred ------eeeeecCce-eeeeeeeecCCCc----ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee
Q 018858 244 ------EILDQSGGK-RLHLDYSVGGHTA----AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 244 ------~~~~~~~~~-~~~~~~~~~~h~~----~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
-.++..... ...++..+.+|.. ....++|+ |++.++.+|+.|..+++||..+. .++.
T Consensus 235 sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws---p~~~~i~ags~dr~vyvwd~~~r---------~~ly 302 (338)
T KOG0265|consen 235 SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS---PNGTKITAGSADRFVYVWDTTSR---------RILY 302 (338)
T ss_pred cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc---CCCCccccccccceEEEeecccc---------cEEE
Confidence 122222211 2234556666532 34566777 89999999999999999999987 7888
Q ss_pred eccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 313 KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.+.+|.+.|+.++|+| ...+|.+++.|.+|++=.
T Consensus 303 klpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 303 KLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 9999999999999999 556999999999998744
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2e-40 Score=256.92 Aligned_cols=246 Identities=17% Similarity=0.251 Sum_probs=217.8
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
.+++|..+|+++.|+++ +.++++|+.+|.|++|+..-. .++.++. |...|++++|+|+...+++++.||+|+|||..
T Consensus 133 ilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HhhhhcccceeEEEccC-CCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 35789999999999998 899999999999999997643 3455555 45999999999999999999999999999998
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
..+.. ..+.+|.-.|.+++|+|...++++|+.|..|++||.+++.++.++. .|...|..+.|+|
T Consensus 211 ~~kee---~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~------------ 274 (464)
T KOG0284|consen 211 MPKEE---RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNP------------ 274 (464)
T ss_pred CCchh---heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcC------------
Confidence 65433 3457788899999999999999999999999999999999999999 9999999999999
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
++++|++++.|..+++||+++-
T Consensus 275 ------------------------n~N~Llt~skD~~~kv~DiR~m---------------------------------- 296 (464)
T KOG0284|consen 275 ------------------------NGNWLLTGSKDQSCKVFDIRTM---------------------------------- 296 (464)
T ss_pred ------------------------CCCeeEEccCCceEEEEehhHh----------------------------------
Confidence 7899999999999999999952
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
+.+..+++|+..++++.|+| -...+|.+|+.||.|..|.+...+ ++.....+|...|++++|+|
T Consensus 297 ------kEl~~~r~Hkkdv~~~~WhP--~~~~lftsgg~Dgsvvh~~v~~~~--------p~~~i~~AHd~~iwsl~~hP 360 (464)
T KOG0284|consen 297 ------KELFTYRGHKKDVTSLTWHP--LNESLFTSGGSDGSVVHWVVGLEE--------PLGEIPPAHDGEIWSLAYHP 360 (464)
T ss_pred ------HHHHHhhcchhhheeecccc--ccccceeeccCCCceEEEeccccc--------cccCCCcccccceeeeeccc
Confidence 55678899999999999998 456799999999999999998432 55556678999999999999
Q ss_pred CCCCcEEEeeCCCeEEEeeC
Q 018858 329 TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~iw~~ 348 (349)
-|.+|++|+.|.++++|.-
T Consensus 361 -lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 361 -LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred -cceeEeecCCCcceeeecc
Confidence 7889999999999999963
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.9e-38 Score=249.44 Aligned_cols=330 Identities=15% Similarity=0.122 Sum_probs=247.9
Q ss_pred CCccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 1 m~~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
|.+++..+..+.||...|.+++|-|...-.++||+.|+++.+|+=..-+-..++..|...|.++.|+|||+++++++.||
T Consensus 133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg 212 (603)
T KOG0318|consen 133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG 212 (603)
T ss_pred EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc
Confidence 45778889999999999999999998666799999999999998666666677888999999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccc--cceeEEEEccCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS--SICSSVQFIPWK 158 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~ 158 (349)
.+.+||-.+++....+..-.+|++.|.+++|+||+..|++++.|.+++|||+.+.++++++..+.. .....+-|..+.
T Consensus 213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 999999999887777776678999999999999999999999999999999999999888762222 233334454332
Q ss_pred CCCCCCCC----------CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-----
Q 018858 159 PWEGLPEN----------NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST----- 223 (349)
Q Consensus 159 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----- 223 (349)
....+..+ .......-+...|.++++++ ++.+|++|+.||.|.-|+..++..-......
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~------d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP------DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcC------CCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 11111111 11222222446788999998 8999999999999999998764321110000
Q ss_pred -------------------------------------CCCccc-------------------------------------
Q 018858 224 -------------------------------------TKPLKG------------------------------------- 229 (349)
Q Consensus 224 -------------------------------------~~~~~~------------------------------------- 229 (349)
...+..
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~ 446 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES 446 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence 011111
Q ss_pred -eeeeeccccEEEEeeeeeecCce------eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcce
Q 018858 230 -SQSTSKVNIRDAEMEILDQSGGK------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 302 (349)
Q Consensus 230 -~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 302 (349)
+++++|++..++ .|..|+.+.. .......+..|.++|++++|+ ||+.|||++...+.+.+||+.+.+
T Consensus 447 s~vAv~~~~~~va-VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS---pd~~yla~~Da~rkvv~yd~~s~~-- 520 (603)
T KOG0318|consen 447 SAVAVSPDGSEVA-VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS---PDGAYLAAGDASRKVVLYDVASRE-- 520 (603)
T ss_pred ceEEEcCCCCEEE-EecccceEEEEEecCCcccceeeeecccCCceEEEEC---CCCcEEEEeccCCcEEEEEcccCc--
Confidence 234444444444 2333322111 111222445689999999999 999999999999999999999974
Q ss_pred ecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 303 QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.......-|...|++++|+| +...+|||+-|..|.||++.
T Consensus 521 ------~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 521 ------VKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred ------eecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEcc
Confidence 23334556999999999998 78899999999999999974
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-40 Score=257.07 Aligned_cols=240 Identities=20% Similarity=0.280 Sum_probs=214.7
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
+.+|..+.|.|+ |+.|++|+..|...+|+...-.-...++.|..+|.++.|++++.++++|..+|.|++|+....
T Consensus 96 kc~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---- 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---- 170 (464)
T ss_pred ccceeeEEEcCC-CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh----
Confidence 357999999999 899999999999999997433333456789999999999999999999999999999998742
Q ss_pred ceeeccCc-ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccc
Q 018858 95 PLESYNYN-KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQC 173 (349)
Q Consensus 95 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
.++.++.| ...|++++|+|+...|+++++||.|+|||....+.-..+. +|.-.|.+++|+|
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP----------------- 232 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHP----------------- 232 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCC-----------------
Confidence 22333334 4889999999999999999999999999999888888888 9999999999999
Q ss_pred cCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCcee
Q 018858 174 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR 253 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
...++++|+.|..|++||.+++
T Consensus 233 -------------------~kgLiasgskDnlVKlWDprSg--------------------------------------- 254 (464)
T KOG0284|consen 233 -------------------TKGLIASGSKDNLVKLWDPRSG--------------------------------------- 254 (464)
T ss_pred -------------------ccceeEEccCCceeEeecCCCc---------------------------------------
Confidence 6788999999999999999986
Q ss_pred eeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCc
Q 018858 254 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 333 (349)
Q Consensus 254 ~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 333 (349)
.++.++.+|+..|..+.|+ +++++|+|+|.|..++++|+++. +.+..+.+|+..+++++|+|....+
T Consensus 255 -~cl~tlh~HKntVl~~~f~---~n~N~Llt~skD~~~kv~DiR~m---------kEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 255 -SCLATLHGHKNTVLAVKFN---PNGNWLLTGSKDQSCKVFDIRTM---------KELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred -chhhhhhhccceEEEEEEc---CCCCeeEEccCCceEEEEehhHh---------HHHHHhhcchhhheeeccccccccc
Confidence 6778899999999999999 89999999999999999999976 6677899999999999999988889
Q ss_pred EEEeeCCCeEEEeeC
Q 018858 334 LVVCDTSKVVKVYSI 348 (349)
Q Consensus 334 l~~~~~dg~i~iw~~ 348 (349)
|.+++.||.|..|.+
T Consensus 322 ftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVV 336 (464)
T ss_pred eeeccCCCceEEEec
Confidence 999999999999986
No 24
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.4e-40 Score=252.02 Aligned_cols=251 Identities=16% Similarity=0.272 Sum_probs=221.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+.+.++.|.||++.|.|+.|. .+.+++|+.|.+|++||+++++++.++-+|...|..+.|+ +.++++++.|.++.
T Consensus 226 ~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsia 300 (499)
T KOG0281|consen 226 SLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIA 300 (499)
T ss_pred cHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeE
Confidence 346778899999999999996 4699999999999999999999999999999999999998 56999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||+...........+.+|...|..+.|+ .+++++++.|.+|++|++.+++.++++. +|...|-|+.+
T Consensus 301 VWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQY--------- 368 (499)
T KOG0281|consen 301 VWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQY--------- 368 (499)
T ss_pred EEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-cccccceehhc---------
Confidence 99999876656666788999999999995 5699999999999999999999999999 99999999887
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.++++++|+.|.+|++||+..+
T Consensus 369 -----------------------------r~rlvVSGSSDntIRlwdi~~G----------------------------- 390 (499)
T KOG0281|consen 369 -----------------------------RDRLVVSGSSDNTIRLWDIECG----------------------------- 390 (499)
T ss_pred -----------------------------cCeEEEecCCCceEEEEecccc-----------------------------
Confidence 5799999999999999999986
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
.++..++||+.-|.++.|. .+.+++|+.||+|+|||+..+.+.......-.+.....|.+.|..
T Consensus 391 -----------~cLRvLeGHEeLvRciRFd-----~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 391 -----------ACLRVLEGHEELVRCIRFD-----NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred -----------HHHHHHhchHHhhhheeec-----CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE
Confidence 7788899999999999985 578999999999999999987643222222355566789999999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.| |...+++++-|.+|-|||+
T Consensus 455 LQF---D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 455 LQF---DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred Eee---cceEEEeccCCCeEEEEEc
Confidence 999 5557999999999999996
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.8e-37 Score=252.94 Aligned_cols=284 Identities=20% Similarity=0.296 Sum_probs=240.2
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
+++|++|.++|++++|+|+ +++|++++.||.+++|++.+++....+..|...+..+.|+|+++++++++.+|.|++|++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 5678899999999999998 899999999999999999988888888889999999999999999999999999999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
++++ .+..+..|...+.++.|+|+++++++++.++.|++||+++++....+. .|...+.+++|+|
T Consensus 81 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~----------- 145 (289)
T cd00200 81 ETGE---CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSP----------- 145 (289)
T ss_pred Cccc---ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcC-----------
Confidence 8653 334445567789999999998889988889999999999888888888 8888999999999
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
++.++++++.+|.|++||++..+...... .....+..+.|+|+++.+++.+. +
T Consensus 146 -------------------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-~ 198 (289)
T cd00200 146 -------------------------DGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSS-D 198 (289)
T ss_pred -------------------------cCCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecC-C
Confidence 67888888889999999998766555444 33457899999999988876443 2
Q ss_pred ecC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 248 QSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 248 ~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
+.+ .........+..|...+.++.|+ +++.++++++.|+.|++||+.++ .....+..|...+.+
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~i~i~~~~~~---------~~~~~~~~~~~~i~~ 266 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFS---PDGYLLASGSEDGTIRVWDLRTG---------ECVQTLSGHTNSVTS 266 (289)
T ss_pred CcEEEEECCCCceecchhhcCCceEEEEEc---CCCcEEEEEcCCCcEEEEEcCCc---------eeEEEccccCCcEEE
Confidence 221 12234555666788899999999 78889998888999999999976 555566688899999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEee
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++|++ ++++|++++.||.+++|+
T Consensus 267 ~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 267 LAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEECC-CCCEEEEecCCCeEEecC
Confidence 99988 678999999999999996
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.6e-38 Score=266.96 Aligned_cols=287 Identities=21% Similarity=0.263 Sum_probs=241.9
Q ss_pred eeeeCC-ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 9 RRLRGH-KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 9 ~~l~~h-~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
+.+..| ...|.|+.|+++ ++.+++++.++.+++|+....+ ....+.+|...|..++|+|+++++++++.|++|+||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 444444 788999999999 8889999999999999997777 677778899999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|++.. ...+..+.+|...|++++|+|+++++++|+.|++|++||++++++...+. +|...|++++|++
T Consensus 231 d~~~~--~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~--------- 298 (456)
T KOG0266|consen 231 DLKDD--GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSP--------- 298 (456)
T ss_pred eccCC--CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECC---------
Confidence 99432 35677788999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce--eeeecCCCCCC-ccceeeeeccccEEEE
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKP-LKGSQSTSKVNIRDAE 242 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 242 (349)
++++|++++.|+.|++||+.++. +.......... .+..+.|+|+++++++
T Consensus 299 ---------------------------d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 299 ---------------------------DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS 351 (456)
T ss_pred ---------------------------CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE
Confidence 89999999999999999999988 34555555444 7899999999999995
Q ss_pred eeee---eecCceeeeeeeeecCCCcceE---EEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 243 MEIL---DQSGGKRLHLDYSVGGHTAAAS---CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 243 ~~~~---~~~~~~~~~~~~~~~~h~~~i~---~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
.... ..+..........+.+|...+. +...+ +.++++++|+.|+.|++||+.+. ..+....+
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~sg~~d~~v~~~~~~s~---------~~~~~l~~ 419 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS---TGGKLIYSGSEDGSVYVWDSSSG---------GILQRLEG 419 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEeccccc---CCCCeEEEEeCCceEEEEeCCcc---------chhhhhcC
Confidence 3221 1122333455566777766433 33334 78999999999999999999987 67778888
Q ss_pred c-ccceEEEEeecCCCCcEEEee--CCCeEEEeeC
Q 018858 317 L-NKKVNWLCTTPTESENLVVCD--TSKVVKVYSI 348 (349)
Q Consensus 317 ~-~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~ 348 (349)
| ...+..+.+++ ..+++++++ .|+.+++|..
T Consensus 420 h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 420 HSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CCCCceeccccCC-CcCeeeecCcCCCceEEEecC
Confidence 9 88899999988 666888887 7999999974
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-37 Score=255.98 Aligned_cols=280 Identities=16% Similarity=0.234 Sum_probs=248.6
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC-CeEEEEEccCCCc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-KEVKSFDVHMPAS 92 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~ 92 (349)
....|+|.+|++. .+.|++|-..|...+|.+..-.+++.+.-...+|..++|+..|+.||.|+.. |.+-||++++.
T Consensus 264 ~~~kvtaa~fH~~-t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-- 340 (893)
T KOG0291|consen 264 NSSKVTAAAFHKG-TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-- 340 (893)
T ss_pred cccceeeeeccCC-ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc--
Confidence 3478999999997 8999999999999999999999999999888999999999999999998765 89999999864
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
..+-..++|...+++++++|||+++|+|++||.|+|||..++-|..+|. .|.+.|+.+.|+.
T Consensus 341 -sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~---------------- 402 (893)
T KOG0291|consen 341 -SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTA---------------- 402 (893)
T ss_pred -ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEe----------------
Confidence 2333456788999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec---
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--- 249 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 249 (349)
.++.+++++.||+|+.||+...+.-+++..+.+.+..+++..|.|..++ +|..|..
T Consensus 403 --------------------~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~-AG~~d~F~If 461 (893)
T KOG0291|consen 403 --------------------RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVC-AGAQDSFEIF 461 (893)
T ss_pred --------------------cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEE-eeccceEEEE
Confidence 8999999999999999999998888899999889999999999999888 4444433
Q ss_pred --CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee
Q 018858 250 --GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 250 --~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
...+++++..+.||+++|.++.|+ |.+..|+++|.|.+||+||+-.. .-......+...+..++|.
T Consensus 462 vWS~qTGqllDiLsGHEgPVs~l~f~---~~~~~LaS~SWDkTVRiW~if~s---------~~~vEtl~i~sdvl~vsfr 529 (893)
T KOG0291|consen 462 VWSVQTGQLLDILSGHEGPVSGLSFS---PDGSLLASGSWDKTVRIWDIFSS---------SGTVETLEIRSDVLAVSFR 529 (893)
T ss_pred EEEeecCeeeehhcCCCCcceeeEEc---cccCeEEeccccceEEEEEeecc---------CceeeeEeeccceeEEEEc
Confidence 234667888899999999999999 89999999999999999998775 2223445677889999998
Q ss_pred cCCCCcEEEeeCCCeEEEeeC
Q 018858 328 PTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~iw~~ 348 (349)
| +|+-|++++.||.|.+||.
T Consensus 530 P-dG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 530 P-DGKELAVATLDGQITFFDI 549 (893)
T ss_pred C-CCCeEEEEEecceEEEEEh
Confidence 8 8999999999999999996
No 28
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-37 Score=224.09 Aligned_cols=246 Identities=16% Similarity=0.156 Sum_probs=216.0
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
+.++.|..|+++|.++.|+-+ |+|.++++.|.+|++|+...+.+++++.+|...|..++.+.++..+++|+.|+.+.+|
T Consensus 8 kr~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred hhceeecccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 467788999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC--ceEeceeccccccceeEEEEccCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ--HCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|++++ +.+..+.+|...|+.++|+.+...+++|+-|..+++||.++ .++++.+. .....|.++...
T Consensus 87 DV~TG---kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~-------- 154 (307)
T KOG0316|consen 87 DVNTG---KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVA-------- 154 (307)
T ss_pred EcccC---eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEec--------
Confidence 99987 55667788999999999999999999999999999999985 46777777 677788888774
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
+..++.|+.||+++.||++.+
T Consensus 155 ------------------------------~heIvaGS~DGtvRtydiR~G----------------------------- 175 (307)
T KOG0316|consen 155 ------------------------------EHEIVAGSVDGTVRTYDIRKG----------------------------- 175 (307)
T ss_pred ------------------------------ccEEEeeccCCcEEEEEeecc-----------------------------
Confidence 477999999999999999975
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
.....+.+ .+|+++.|+ ++++..+.++.|+++++.|-.++ +++..+.+|.+.-..
T Consensus 176 -----------~l~sDy~g--~pit~vs~s---~d~nc~La~~l~stlrLlDk~tG---------klL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 176 -----------TLSSDYFG--HPITSVSFS---KDGNCSLASSLDSTLRLLDKETG---------KLLKSYKGHKNMEYK 230 (307)
T ss_pred -----------eeehhhcC--CcceeEEec---CCCCEEEEeeccceeeecccchh---------HHHHHhcccccceee
Confidence 33333443 479999999 89999999999999999999998 888899999887665
Q ss_pred EEeec-CCCCcEEEeeCCCeEEEeeC
Q 018858 324 LCTTP-TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 324 ~~~~~-~~~~~l~~~~~dg~i~iw~~ 348 (349)
+..+- .....+++|++||.|++||+
T Consensus 231 ldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred eeeeecccceeEEeccCCceEEEEEe
Confidence 54332 23457999999999999997
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-38 Score=256.18 Aligned_cols=252 Identities=17% Similarity=0.300 Sum_probs=229.0
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
++..+.+..|+..|.++.++|. ...++++-.+|.+.|||.+++..+..+.....||.+..|-+..+.+++|+.|..|+|
T Consensus 3 l~~krk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 3 LDFKRKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRV 81 (794)
T ss_pred chhhhHhhccCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEE
Confidence 3455677789999999999999 788999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC-CceEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|+..++ ..+..+.+|.+.+.+++.+|...+++++++|-.|++||.+ ...+.+++. +|..-|.+++|+|.
T Consensus 82 fnynt~---ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPk------ 151 (794)
T KOG0276|consen 82 FNYNTG---EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPK------ 151 (794)
T ss_pred Eecccc---eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCC------
Confidence 999986 5567788899999999999999999999999999999998 457788899 99999999999996
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
|.+.+++++-|++|++|.+.+.
T Consensus 152 -----------------------------D~ntFaS~sLDrTVKVWslgs~----------------------------- 173 (794)
T KOG0276|consen 152 -----------------------------DPNTFASASLDRTVKVWSLGSP----------------------------- 173 (794)
T ss_pred -----------------------------CccceeeeeccccEEEEEcCCC-----------------------------
Confidence 8899999999999999999874
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
.+..++.+|...|+++.+-+- +|..||++|+.|.+|+|||.++. .+++++.+|...|..
T Consensus 174 -----------~~nfTl~gHekGVN~Vdyy~~-gdkpylIsgaDD~tiKvWDyQtk---------~CV~TLeGHt~Nvs~ 232 (794)
T KOG0276|consen 174 -----------HPNFTLEGHEKGVNCVDYYTG-GDKPYLISGADDLTIKVWDYQTK---------SCVQTLEGHTNNVSF 232 (794)
T ss_pred -----------CCceeeeccccCcceEEeccC-CCcceEEecCCCceEEEeecchH---------HHHHHhhcccccceE
Confidence 667889999999999999842 34569999999999999999998 778889999999999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEee
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+.|+| .-.++++|+.||+++||+
T Consensus 233 v~fhp-~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 233 VFFHP-ELPIIISGSEDGTVRIWN 255 (794)
T ss_pred EEecC-CCcEEEEecCCccEEEec
Confidence 99998 444899999999999997
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.9e-37 Score=242.28 Aligned_cols=287 Identities=17% Similarity=0.176 Sum_probs=240.2
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--c--EEEEee----------cCCCCeEEEEEecCCCEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--D--VQLVTD----------VGNGPVTSLCFKSGNEDI 73 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~--~~~~~~----------~~~~~v~~~~~~~~~~~l 73 (349)
++.+. |+.+|.+++|+|-....+++|+.|-..++|++... . ....++ ..+..|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 34455 99999999999984448999999999999998741 1 111111 134689999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEE
Q 018858 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ 153 (349)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 153 (349)
|+|+.||.+++|+... ..+..+..|+++|.++.|+.+|.+|++++.|+++.+||..++...+.+. .|..+-..+.
T Consensus 251 atG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVd 325 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVD 325 (524)
T ss_pred EEeecCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee-eccCCccceE
Confidence 9999999999999863 4556677789999999999999999999999999999999999999988 7777767788
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeee
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
|.. ...|++.+.||.|+++.+.......++.+ +...+..+.|
T Consensus 326 W~~-------------------------------------~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~ 367 (524)
T KOG0273|consen 326 WQS-------------------------------------NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKW 367 (524)
T ss_pred Eec-------------------------------------CceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEE
Confidence 865 56799999999999999998777777777 7899999999
Q ss_pred eccccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecC------CccEEEEeeCCCeEEEEecCCCccee
Q 018858 234 SKVNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGE------RGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~------~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
+|.|..|++ .+.|.+ ..........+.+|...|+.+.|+|.+| .+..+++++.|++|++||+..+
T Consensus 368 n~tg~LLaS-~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---- 442 (524)
T KOG0273|consen 368 NPTGSLLAS-CSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---- 442 (524)
T ss_pred CCCCceEEE-ecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC----
Confidence 999999995 333332 2334456778899999999999995322 2447999999999999999998
Q ss_pred cccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 304 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 304 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.++..+..|..+|.+++|+| +++++++|+.||.|++|+.+
T Consensus 443 -----v~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 443 -----VPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred -----ceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEecccc
Confidence 78888999999999999988 89999999999999999863
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=219.08 Aligned_cols=269 Identities=17% Similarity=0.190 Sum_probs=220.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
++.+.++++.....|+.+...|+ ++.||+++. ..|++||+.+++ ++.++.+|...|+++.|..+|+.+++|++||+
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 67888999977888999999999 788888875 589999998765 58999999999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
++|||++.....+ .+ .+..+|+++..+|+...|++|..+|.|++||+....+...+.+.....|.++...|
T Consensus 107 ~kIWdlR~~~~qR---~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~----- 177 (311)
T KOG0315|consen 107 VKIWDLRSLSCQR---NY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP----- 177 (311)
T ss_pred EEEEeccCcccch---hc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-----
Confidence 9999999743322 22 24589999999999999999999999999999988776666535556788888888
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec-----CCCCCCccceeeeecc
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-----KSTTKPLKGSQSTSKV 236 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 236 (349)
+|.+++.+...|..++|++-..+....+ .......+....+|||
T Consensus 178 -------------------------------dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 178 -------------------------------DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD 226 (311)
T ss_pred -------------------------------CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC
Confidence 8999999999999999999874332222 2223456778899999
Q ss_pred ccEEEEeeeeee-cC--c-eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee
Q 018858 237 NIRDAEMEILDQ-SG--G-KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 237 ~~~~~~~~~~~~-~~--~-~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
+++|+++++... .+ . ..++....+.+|...+..++|| .||+||++|+.|+.+++||+..+ +.+.
T Consensus 227 ~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS---~dg~YlvTassd~~~rlW~~~~~---------k~v~ 294 (311)
T KOG0315|consen 227 VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS---ADGEYLVTASSDHTARLWDLSAG---------KEVR 294 (311)
T ss_pred CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec---cCccEEEecCCCCceeecccccC---------ceee
Confidence 999997543221 11 1 1246667889999999999999 99999999999999999999998 6677
Q ss_pred eccccccceEEEEe
Q 018858 313 KNINLNKKVNWLCT 326 (349)
Q Consensus 313 ~~~~~~~~v~~~~~ 326 (349)
...+|.....+++.
T Consensus 295 qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 295 QYQGHHKAAVCVAL 308 (311)
T ss_pred ecCCcccccEEEEe
Confidence 88888887777765
No 32
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=225.89 Aligned_cols=247 Identities=16% Similarity=0.200 Sum_probs=214.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC------cEEEEeecCCCCeEEEEEecCCCEEEEEe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK------DVQLVTDVGNGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 77 (349)
+...++.++-....|..++|+|. ++++|.|+.|....||++.+. +..+.+.+|.+.+.++.|.++ ..|++++
T Consensus 86 TtnK~haipl~s~WVMtCA~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~S 163 (343)
T KOG0286|consen 86 TTNKVHAIPLPSSWVMTCAYSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGS 163 (343)
T ss_pred cccceeEEecCceeEEEEEECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecC
Confidence 34566777777888999999999 999999999999999999855 335678899999999999874 5699999
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.|.+..+||++++ +.+..+.+|.+.|.+++++| +++.|++|+-|+..++||+|.+.+.+.|. +|+..|.++.|.|
T Consensus 164 GD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP 239 (343)
T KOG0286|consen 164 GDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFP 239 (343)
T ss_pred CCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec-ccccccceEEEcc
Confidence 9999999999987 45567788999999999999 89999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-CCCccceeeeec
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSK 235 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~ 235 (349)
+|.-|++|+.|++.++||++..+.+.....+ ....+.+++||.
T Consensus 240 ------------------------------------~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 240 ------------------------------------SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred ------------------------------------CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 8999999999999999999998877755543 457789999999
Q ss_pred cccEEEEee---eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 236 VNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 236 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
.|++|.+.. ....+.....+....+.+|...|+++..+ |||.-+++|+.|.+++||.
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s---~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS---PDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC---CCCcEEEecchhHheeecC
Confidence 999998521 12223333445667788999999999999 9999999999999999994
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.6e-37 Score=253.90 Aligned_cols=322 Identities=18% Similarity=0.197 Sum_probs=244.4
Q ss_pred cCCCCeeeeC-CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCE--EEEEeCCC
Q 018858 4 AEAKPRRLRG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED--IIYVSSGK 80 (349)
Q Consensus 4 ~~~~~~~l~~-h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg 80 (349)
+++.++.++. |++||.-++|+|. +.++++|+.|+.++|||+..+.+...+++|.+.|.++.|+|+-++ |++|..|+
T Consensus 93 tgk~irswKa~He~Pvi~ma~~~~-g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~ 171 (775)
T KOG0319|consen 93 TGKLIRSWKAIHEAPVITMAFDPT-GTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDG 171 (775)
T ss_pred cchHhHhHhhccCCCeEEEEEcCC-CceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCc
Confidence 5677888888 9999999999999 799999999999999999999999999999999999999997654 88899999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccC---
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW--- 157 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--- 157 (349)
.+++||+++... .+..+..|.+.|+++++.+++..++++++|..+.+||+.+.+..+.++ ....+.++.+.++
T Consensus 172 ~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp--~ye~~E~vv~l~~~~~ 247 (775)
T KOG0319|consen 172 TVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLP--LYESLESVVRLREELG 247 (775)
T ss_pred eEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheec--hhhheeeEEEechhcC
Confidence 999999996532 566677889999999999999999999999999999997665554443 1122333333222
Q ss_pred --CCCC---------------------------------------------CCCCCC-----------------------
Q 018858 158 --KPWE---------------------------------------------GLPENN----------------------- 167 (349)
Q Consensus 158 --~~~~---------------------------------------------~~~~~~----------------------- 167 (349)
+.|. ...|++
T Consensus 248 ~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~ 327 (775)
T KOG0319|consen 248 GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEIL 327 (775)
T ss_pred CcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhe
Confidence 1111 000000
Q ss_pred -----------------CCCcccc------------CCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee
Q 018858 168 -----------------GNAGQCY------------NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218 (349)
Q Consensus 168 -----------------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 218 (349)
.+..+.. +...+.++++.. +|.+|++|+.|.++++|.++++....
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~------~g~llat~sKD~svilWr~~~~~~~~ 401 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS------SGDLLATGSKDKSVILWRLNNNCSKS 401 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc------cCcEEEEecCCceEEEEEecCCcchh
Confidence 0000000 111223333222 56789999999999999885543322
Q ss_pred ---ecCCCCCCccceeeeeccccEEEEeeeeeecCce-------------eeeeeeeecCCCcceEEEEEeeecCCccEE
Q 018858 219 ---RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-------------RLHLDYSVGGHTAAASCVAFSMFGERGKYL 282 (349)
Q Consensus 219 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l 282 (349)
.....+.+.+.+++++..+..+.+.++.|.++.. ...+......|...|++++++ |+.+++
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia---~ndkLi 478 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA---PNDKLI 478 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec---CCCceE
Confidence 2334556778889998888777777776665332 111222445799999999999 899999
Q ss_pred EEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 283 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 283 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+|||.|++.+||+++.. .++..+.+|...|.++.|++ ..+.++|+|.|++|+||.++
T Consensus 479 AT~SqDktaKiW~le~~---------~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 479 ATGSQDKTAKIWDLEQL---------RLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred EecccccceeeecccCc---------eEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEec
Confidence 99999999999999976 78889999999999999988 55699999999999999974
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.8e-38 Score=239.50 Aligned_cols=230 Identities=20% Similarity=0.317 Sum_probs=204.3
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
..+.|.|+.+. ...+++|..|.+|+|||..+..+...+.+|.+.|.|+.|. .+.|++|+.|.+|++||++++
T Consensus 196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg--- 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG--- 267 (499)
T ss_pred cCCceEEEEec---chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC---
Confidence 45679999885 4689999999999999999999999999999999999986 568999999999999999987
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce---EeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC---LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
++++.+-.|.+.|..+.|+ +.++++++.|.++.+||+.... +.+.+. +|...|..+.|+
T Consensus 268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd--------------- 329 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD--------------- 329 (499)
T ss_pred chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccc---------------
Confidence 4556666788999999997 4599999999999999998654 345567 899999999984
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 250 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
.+++++++.|.+|++|++.+.
T Consensus 330 -----------------------~kyIVsASgDRTikvW~~st~------------------------------------ 350 (499)
T KOG0281|consen 330 -----------------------DKYIVSASGDRTIKVWSTSTC------------------------------------ 350 (499)
T ss_pred -----------------------cceEEEecCCceEEEEeccce------------------------------------
Confidence 579999999999999999985
Q ss_pred ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCC
Q 018858 251 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 330 (349)
Q Consensus 251 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (349)
+++.++.+|...|-|+.+ +++++++|+.|.+|++||++.+ .++..+.+|..-|.++.| +
T Consensus 351 ----efvRtl~gHkRGIAClQY-----r~rlvVSGSSDntIRlwdi~~G---------~cLRvLeGHEeLvRciRF---d 409 (499)
T KOG0281|consen 351 ----EFVRTLNGHKRGIACLQY-----RDRLVVSGSSDNTIRLWDIECG---------ACLRVLEGHEELVRCIRF---D 409 (499)
T ss_pred ----eeehhhhcccccceehhc-----cCeEEEecCCCceEEEEecccc---------HHHHHHhchHHhhhheee---c
Confidence 788899999999999986 5899999999999999999999 888899999999999999 5
Q ss_pred CCcEEEeeCCCeEEEeeCC
Q 018858 331 SENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 331 ~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.+++|+.||+|+|||+.
T Consensus 410 ~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred CceeeeccccceEEEEecc
Confidence 5589999999999999973
No 35
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-37 Score=224.71 Aligned_cols=246 Identities=18% Similarity=0.220 Sum_probs=212.1
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-CcEEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
-.+.+..++|+++..+.+++++.||++++||+.. ..++..++.|...|.++.|++ .++.+++++.|++|++|+...+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~- 137 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP- 137 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-
Confidence 3577999999998888999999999999999653 356888999999999999998 4556788899999999998754
Q ss_pred cccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
..+.++.+|..-|...+|+|. .+.|++++.|+.+++||++..-....+. .|...+.++.|+.-
T Consensus 138 --~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky------------- 201 (311)
T KOG0277|consen 138 --NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKY------------- 201 (311)
T ss_pred --cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeeccccc-------------
Confidence 566778889999999999995 5899999999999999999543334477 78899999999883
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 250 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
+.+.|++|+.|+.|+.||+++-+
T Consensus 202 ----------------------~~~vl~Tg~vd~~vr~wDir~~r----------------------------------- 224 (311)
T KOG0277|consen 202 ----------------------NHNVLATGGVDNLVRGWDIRNLR----------------------------------- 224 (311)
T ss_pred ----------------------CCcEEEecCCCceEEEEehhhcc-----------------------------------
Confidence 67899999999999999999732
Q ss_pred ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCC
Q 018858 251 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 330 (349)
Q Consensus 251 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (349)
.++..+.+|.-.|+.+.|+| .....|++++.|-+++|||...+. ..+.....|..-+..+.|++.+
T Consensus 225 ----~pl~eL~gh~~AVRkvk~Sp--h~~~lLaSasYDmT~riw~~~~~d--------s~~e~~~~HtEFv~g~Dws~~~ 290 (311)
T KOG0277|consen 225 ----TPLFELNGHGLAVRKVKFSP--HHASLLASASYDMTVRIWDPERQD--------SAIETVDHHTEFVCGLDWSLFD 290 (311)
T ss_pred ----ccceeecCCceEEEEEecCc--chhhHhhhccccceEEecccccch--------hhhhhhhccceEEecccccccc
Confidence 45677899999999999997 456799999999999999998764 4555666789999999999988
Q ss_pred CCcEEEeeCCCeEEEee
Q 018858 331 SENLVVCDTSKVVKVYS 347 (349)
Q Consensus 331 ~~~l~~~~~dg~i~iw~ 347 (349)
+.++++++.|+.++||+
T Consensus 291 ~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 291 PGQVASTGWDELLYVWN 307 (311)
T ss_pred Cceeeecccccceeeec
Confidence 88999999999999997
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.4e-36 Score=248.07 Aligned_cols=258 Identities=17% Similarity=0.231 Sum_probs=214.7
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
+...++|...++|++++|| |++++||+.||.|+|||...+-+..++..|+..|+.+.|+..++.+++.+-||+|+.||+
T Consensus 343 VlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred eeeccccccceeeEEECCC-CcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 4455799999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCc-EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD-VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
......+.+... ......|++..|.|..+.+|+.|.. |++|++++|+.+..+. +|+++|.+++|+|
T Consensus 422 kRYrNfRTft~P--~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~---------- 488 (893)
T KOG0291|consen 422 KRYRNFRTFTSP--EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSP---------- 488 (893)
T ss_pred cccceeeeecCC--CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEcc----------
Confidence 865443333321 1235678899999999999988764 9999999999999999 9999999999999
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.+..|++++.|.+|++||+-...
T Consensus 489 --------------------------~~~~LaS~SWDkTVRiW~if~s~------------------------------- 511 (893)
T KOG0291|consen 489 --------------------------DGSLLASGSWDKTVRIWDIFSSS------------------------------- 511 (893)
T ss_pred --------------------------ccCeEEeccccceEEEEEeeccC-------------------------------
Confidence 78999999999999999997531
Q ss_pred eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc-----------cceeeecc
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN-----------NDLLIKNI 315 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----------~~~~~~~~ 315 (349)
....++. +...+..++|. |+|+.|+++..||.|.+||.+.+.+...... ........
T Consensus 512 --------~~vEtl~-i~sdvl~vsfr---PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~s 579 (893)
T KOG0291|consen 512 --------GTVETLE-IRSDVLAVSFR---PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENS 579 (893)
T ss_pred --------ceeeeEe-eccceeEEEEc---CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhc
Confidence 1223333 45678999999 9999999999999999999998765533211 11111222
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
......+.+++++ ||.++++||....|++|+++
T Consensus 580 a~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 580 AKGKTFTTICYSA-DGKCILAGGESNSICIYDVP 612 (893)
T ss_pred ccCCceEEEEEcC-CCCEEEecCCcccEEEEECc
Confidence 3446789999987 99999999999999999974
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=250.38 Aligned_cols=248 Identities=19% Similarity=0.243 Sum_probs=218.4
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEecCC-CEEEEEeCCCeEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVK 83 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~ 83 (349)
+.+.||++.|.++....+ |.+|+||+.|.++++|.++++. ++....+|...|.+++++..+ .+++++|.|++++
T Consensus 359 ~ii~GH~e~vlSL~~~~~-g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSS-GDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred EEEeCchhheeeeeeccc-CcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 377899999999996666 6899999999999999885443 245567899999999997644 5689999999999
Q ss_pred EEEccCCCccc--cee----eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 84 SFDVHMPASWR--PLE----SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 84 iwd~~~~~~~~--~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
+|++...+... ... ....|...|++++++|+.+++|+|+.|++.+||++.+.....++. +|...+.++.|+|
T Consensus 438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~- 515 (775)
T KOG0319|consen 438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSK- 515 (775)
T ss_pred EecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEecc-
Confidence 99998622211 111 235688999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccc
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 237 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (349)
..+.+++++.|++|+||.+.+.
T Consensus 516 -----------------------------------~dq~laT~SgD~TvKIW~is~f----------------------- 537 (775)
T KOG0319|consen 516 -----------------------------------NDQLLATCSGDKTVKIWSISTF----------------------- 537 (775)
T ss_pred -----------------------------------ccceeEeccCCceEEEEEeccc-----------------------
Confidence 7899999999999999999975
Q ss_pred cEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 238 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
.+++++.||...|..+.|- .+++.|++++.||.|++|++++. .++..+..|
T Consensus 538 -----------------SClkT~eGH~~aVlra~F~---~~~~qliS~~adGliKlWnikt~---------eC~~tlD~H 588 (775)
T KOG0319|consen 538 -----------------SCLKTFEGHTSAVLRASFI---RNGKQLISAGADGLIKLWNIKTN---------ECEMTLDAH 588 (775)
T ss_pred -----------------eeeeeecCccceeEeeeee---eCCcEEEeccCCCcEEEEeccch---------hhhhhhhhc
Confidence 7889999999999999999 89999999999999999999998 677888999
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++.|++++.++ ....++||+.||.|.+|.
T Consensus 589 ~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 589 NDRVWALSVSP-LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cceeEEEeecC-ccceeEecCCCeEEEEee
Confidence 99999999988 566899999999999995
No 38
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=6.6e-36 Score=258.27 Aligned_cols=291 Identities=18% Similarity=0.213 Sum_probs=236.8
Q ss_pred eCCceeeeEEEEecCCCceEEEeC--CCCcEEEEECCC------------CcEEEEeecCCCCeEEEEEecCCCEEEEEe
Q 018858 12 RGHKATATCCIASRDRPGFVASSG--EDGCICWFDLRS------------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~--~dg~i~vwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 77 (349)
..+...|.+++.+|+ +..++||+ .||.++||+.+. .+.+.....|.+.|.|+.|+|||++||+|+
T Consensus 10 ~H~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred ccCCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 345567999999999 89999999 899999998642 234566778999999999999999999999
Q ss_pred CCCeEEEEEccC----------C-----CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 78 SGKEVKSFDVHM----------P-----ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 78 ~dg~i~iwd~~~----------~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.|+.|.||+... + +..+....+.+|...|..++|+|++.+|++++.|+.|.+||.++.+.++.++
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 999999999873 0 1234566788899999999999999999999999999999999999999999
Q ss_pred cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC
Q 018858 143 AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 222 (349)
Q Consensus 143 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 222 (349)
+|.+.|..+.|.| -|++|++-+.|++|++|+..+-........
T Consensus 169 -~H~s~VKGvs~DP------------------------------------~Gky~ASqsdDrtikvwrt~dw~i~k~It~ 211 (942)
T KOG0973|consen 169 -GHQSLVKGVSWDP------------------------------------IGKYFASQSDDRTLKVWRTSDWGIEKSITK 211 (942)
T ss_pred -cccccccceEECC------------------------------------ccCeeeeecCCceEEEEEcccceeeEeecc
Confidence 9999999999999 899999999999999999776444443332
Q ss_pred -----CCCCccceeeeeccccEEEEeeeeee-------cCceeeeeeeeecCCCcceEEEEEee--ecCCcc--------
Q 018858 223 -----TTKPLKGSQSTSKVNIRDAEMEILDQ-------SGGKRLHLDYSVGGHTAAASCVAFSM--FGERGK-------- 280 (349)
Q Consensus 223 -----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~h~~~i~~i~~~~--~~~~~~-------- 280 (349)
+.......++|||||++|++....++ ..+..+..-..+-||.+++.++.|+| +..+.+
T Consensus 212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~ 291 (942)
T KOG0973|consen 212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPN 291 (942)
T ss_pred chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCC
Confidence 33456778999999999997433222 12234555677889999999999997 211111
Q ss_pred ----EEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 281 ----YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 281 ----~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+|+|+.|+.|.||.....+ +++....-....|..++|+| ||..|++||.||+|.+..++
T Consensus 292 ~~y~i~AvgSqDrSlSVW~T~~~R--------Pl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 292 CYYCIAAVGSQDRSLSVWNTALPR--------PLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred cceEEEEEecCCccEEEEecCCCC--------chhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcc
Confidence 67899999999999997763 33333444677999999988 99999999999999998753
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-37 Score=258.02 Aligned_cols=278 Identities=16% Similarity=0.219 Sum_probs=232.7
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
..+...+..|..++|+|. ...++++-..|.|++||++-+.++..|..|.++|..++|+|....+++|+.|-.|++|+.+
T Consensus 3 tkfEskSsRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred chhhcccccccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 345556778999999999 8899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
+. +++.++.+|-+.|..+.|++.-.+++++++|.+|+||+..+++++..+. +|+.-|.|.+|+|
T Consensus 82 ~r---rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhp------------ 145 (1202)
T KOG0292|consen 82 TR---RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHP------------ 145 (1202)
T ss_pred cc---eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCC------------
Confidence 64 6677788899999999999999999999999999999999999999999 9999999999999
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
....+++++-|.+||+||+..-+.........+...+. .+ +..+.
T Consensus 146 ------------------------tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~---~~--------~~~dL 190 (1202)
T KOG0292|consen 146 ------------------------TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG---QQ--------GNSDL 190 (1202)
T ss_pred ------------------------ccceEEEecccceEEEEeecchhccCCCCCCchhhhhc---cc--------cchhh
Confidence 78899999999999999998643322222211111110 00 00111
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
....+.-..+.+.||...|+-++|+ |.-..+++|+.|..|++|.+...+. ..+....+|.+.|.++-|+|
T Consensus 191 fg~~DaVVK~VLEGHDRGVNwaAfh---pTlpliVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 191 FGQTDAVVKHVLEGHDRGVNWAAFH---PTLPLIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred cCCcCeeeeeeecccccccceEEec---CCcceEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecC
Confidence 1111234456789999999999999 8889999999999999999987643 55667889999999999999
Q ss_pred CCCCcEEEeeCCCeEEEeeCC
Q 018858 329 TESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+++++.|.|++|+|||+.
T Consensus 261 -~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 261 -HQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred -ccceeEecCCCccEEEEecc
Confidence 55699999999999999984
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-34 Score=265.42 Aligned_cols=290 Identities=16% Similarity=0.145 Sum_probs=222.7
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----c----EEEEeecCCCCeEEEEEec-CCCEEEEEeCCCe
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----D----VQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKE 81 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 81 (349)
+..|.+.|.+++|+|+ +++|++|+.|+.|+||+.... . ....+. +...+.+++|++ .+.+|++++.||.
T Consensus 479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 4568999999999998 899999999999999997532 1 122333 346789999987 4788999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
|++||+.++ ..+..+.+|...|++++|+| ++.+|++|+.|+.|++||++++..+..+. . ...+.++.|.+.
T Consensus 557 v~lWd~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~-~~~v~~v~~~~~--- 628 (793)
T PLN00181 557 VQVWDVARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-T-KANICCVQFPSE--- 628 (793)
T ss_pred EEEEECCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-c-CCCeEEEEEeCC---
Confidence 999999875 34556677889999999997 67899999999999999999988888877 3 457889999653
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++.+|++|+.||.|++||+++..............+..+.|. ++..+
T Consensus 629 --------------------------------~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~l 675 (793)
T PLN00181 629 --------------------------------SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTL 675 (793)
T ss_pred --------------------------------CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEE
Confidence 689999999999999999987653222223345678888887 56666
Q ss_pred EEeeeeeecCce----------eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecc--ccc
Q 018858 241 AEMEILDQSGGK----------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS--INN 308 (349)
Q Consensus 241 ~~~~~~~~~~~~----------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~ 308 (349)
++ ++.|..+.. ...++..+.+|...++.+.|+ +++++|++|+.|+.|++|+.......... ...
T Consensus 676 vs-~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s---~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~ 751 (793)
T PLN00181 676 VS-SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS---VSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTI 751 (793)
T ss_pred EE-EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc---CCCCEEEEEeCCCEEEEEECCCCCceEEEecccC
Confidence 64 333322111 124567788999999999999 89999999999999999998765322110 000
Q ss_pred cee--eeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 309 DLL--IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 309 ~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..+ .....+...|.+++|+| ++..|++|+.||.|+||++
T Consensus 752 ~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 752 DPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 000 01234566799999988 8889999999999999997
No 41
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=5.3e-36 Score=235.55 Aligned_cols=260 Identities=18% Similarity=0.272 Sum_probs=220.8
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----------EEEEeecCCCCeEEEEEecC-CCEEEEEeCCCe
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----------VQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKE 81 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 81 (349)
.|.+.|+.+.+-|++..++++.+..+.++|||..+.. +-..+.+|.+.-.+++|++. .-++++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 5999999999999989999999999999999986421 12377889887888999884 346899999999
Q ss_pred EEEEEccCCCc----ccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcC--CceEeceeccccccceeEEEE
Q 018858 82 VKSFDVHMPAS----WRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIR--QHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 82 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~v~~~~~ 154 (349)
|++||+..... ..+...+.+|...|..++|++. ..+|++++.|+.+.|||+| +.++....+ .|.+.+.|++|
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~f 280 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVAF 280 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEEEe
Confidence 99999985332 4556678889999999999995 4788999999999999999 455556666 89999999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
+|- ++..||+|+.|++|.+||+|+-.
T Consensus 281 np~-----------------------------------~~~ilAT~S~D~tV~LwDlRnL~------------------- 306 (422)
T KOG0264|consen 281 NPF-----------------------------------NEFILATGSADKTVALWDLRNLN------------------- 306 (422)
T ss_pred CCC-----------------------------------CCceEEeccCCCcEEEeechhcc-------------------
Confidence 995 67899999999999999999732
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee-----cccccc
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-----TSINND 309 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-----~~~~~~ 309 (349)
.+++++.+|...|.++.|+| .....||+++.|+.+.|||+..-...+ ...+..
T Consensus 307 --------------------~~lh~~e~H~dev~~V~WSP--h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE 364 (422)
T KOG0264|consen 307 --------------------KPLHTFEGHEDEVFQVEWSP--HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE 364 (422)
T ss_pred --------------------cCceeccCCCcceEEEEeCC--CCCceeEecccCCcEEEEeccccccccChhhhccCCcc
Confidence 56788999999999999997 567799999999999999998755443 234557
Q ss_pred eeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 310 LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+++...+|...|..+.|+|.+...|++++.|+.+.||+++
T Consensus 365 llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 365 LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 7788899999999999999999899999999999999874
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-35 Score=241.87 Aligned_cols=252 Identities=15% Similarity=0.205 Sum_probs=225.2
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
++...++.+..-.-+|++..|-+. .+.+++|+.|..|+||++.+++.+..+..|..-|.+++.+|...+++++|.|-.|
T Consensus 43 etqtmVksfeV~~~PvRa~kfiaR-knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~i 121 (794)
T KOG0276|consen 43 ETQTMVKSFEVSEVPVRAAKFIAR-KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTI 121 (794)
T ss_pred ccceeeeeeeecccchhhheeeec-cceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEE
Confidence 356678888888899999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
++||.+.. ....+.+.+|...|.+++|+|. .+.||+++-|++|++|.+.+..+..+++ +|...|.|+.|-+-
T Consensus 122 KlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~---- 194 (794)
T KOG0276|consen 122 KLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTG---- 194 (794)
T ss_pred EEeeccCc--eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccC----
Confidence 99999863 6777889999999999999995 5899999999999999999999999999 99999999999882
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.+..+|++|+.|..|++||..+.
T Consensus 195 ------------------------------gdkpylIsgaDD~tiKvWDyQtk--------------------------- 217 (794)
T KOG0276|consen 195 ------------------------------GDKPYLISGADDLTIKVWDYQTK--------------------------- 217 (794)
T ss_pred ------------------------------CCcceEEecCCCceEEEeecchH---------------------------
Confidence 25679999999999999999985
Q ss_pred EeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 242 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
.++.++.||...|+.+.|+ |.-.++++|++||+||||+..+. ++...+.---+.+
T Consensus 218 -------------~CV~TLeGHt~Nvs~v~fh---p~lpiiisgsEDGTvriWhs~Ty---------~lE~tLn~gleRv 272 (794)
T KOG0276|consen 218 -------------SCVQTLEGHTNNVSFVFFH---PELPIIISGSEDGTVRIWNSKTY---------KLEKTLNYGLERV 272 (794)
T ss_pred -------------HHHHHhhcccccceEEEec---CCCcEEEEecCCccEEEecCcce---------ehhhhhhcCCceE
Confidence 7889999999999999999 88899999999999999999987 4555555566789
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEE
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKV 345 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~i 345 (349)
++++..+ .+..++.|.+.|.|.+
T Consensus 273 W~I~~~k-~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 273 WCIAAHK-GDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEeecC-CCCeEEEeccCCcEEE
Confidence 9998877 4446788877777654
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=229.58 Aligned_cols=282 Identities=16% Similarity=0.151 Sum_probs=228.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee--------cCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--------VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
+.+.-+.|..|+|+ +++|++|+.||.|.+||..+|+....++ -+..+|.|+.|+.+..++|+|+.||.|++
T Consensus 211 g~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 34556889999999 9999999999999999999988654433 36789999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
|.++++.+.+.+.. +|...|+|+.|+.|+..+++++.|.++++.-+++|+++++++ +|.+-|+...|.+
T Consensus 290 Wri~tG~ClRrFdr--AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~-------- 358 (508)
T KOG0275|consen 290 WRIETGQCLRRFDR--AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTD-------- 358 (508)
T ss_pred EEEecchHHHHhhh--hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcC--------
Confidence 99999876655433 578999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC-CCccceeeeecc-ccEEEE
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT-KPLKGSQSTSKV-NIRDAE 242 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 242 (349)
+|..+++++.||+|++|+.++.++..+++... ...+..+-.-|. ...+++
T Consensus 359 ----------------------------dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV 410 (508)
T KOG0275|consen 359 ----------------------------DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV 410 (508)
T ss_pred ----------------------------CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE
Confidence 89999999999999999999998888766543 344555544443 233332
Q ss_pred ee-eeeecCc-eeeeeeeeecC---CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 243 ME-ILDQSGG-KRLHLDYSVGG---HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 243 ~~-~~~~~~~-~~~~~~~~~~~---h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
+. +....+. ...+.++.+.. ..+...+...+ |.|.++++.++|+.++.|.+.++ .+...+.-|
T Consensus 411 CNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lS---pkGewiYcigED~vlYCF~~~sG---------~LE~tl~Vh 478 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILS---PKGEWIYCIGEDGVLYCFSVLSG---------KLERTLPVH 478 (508)
T ss_pred EcCCCeEEEEeccceEEeeeccCCccCCceEEEEec---CCCcEEEEEccCcEEEEEEeecC---------ceeeeeecc
Confidence 11 1111111 12344444432 23345566678 89999999999999999999998 677777889
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
...+..++.+| ..+.|++-+.||.+++|.
T Consensus 479 EkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 479 EKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccCc-ccchhhhhcccchhhhcC
Confidence 99999999999 556899999999999995
No 44
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.2e-35 Score=225.46 Aligned_cols=257 Identities=16% Similarity=0.181 Sum_probs=217.9
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCC--CceEEEeCCCCcEEEEECCCCcE----EEEeecCCCCeEEEEEecCCCEEEEE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDR--PGFVASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYV 76 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~--~~~l~t~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~ 76 (349)
..++..+.+.||.++|.+++|...+ ...|++++.|.++++|..+.++. +....+|...|.++...+++..+++|
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg 211 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG 211 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence 4678899999999999988886542 23599999999999999887654 23345899999999999999999999
Q ss_pred eCCCeEEEEEccCC----------------------CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 77 SSGKEVKSFDVHMP----------------------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 77 ~~dg~i~iwd~~~~----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
+.|..|.||+..+. ....++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.+
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence 99999999993221 12235566889999999999998 67899999999999999999
Q ss_pred ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 135 HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
+....++. .+..+.++.++| ..++|++|+.|..|++||.+++
T Consensus 291 g~~~~~~~--~~ksl~~i~~~~------------------------------------~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 291 GGLKSTLT--TNKSLNCISYSP------------------------------------LSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred ccceeeee--cCcceeEeeccc------------------------------------ccceeeecCCCCceeecCCCCC
Confidence 99888877 567899999999 7899999999999999999974
Q ss_pred eeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEE
Q 018858 215 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vw 294 (349)
. .-....++.+|...|.++.|+| .+...|++|+.|+++++|
T Consensus 333 ~-------------------------------------gs~v~~s~~gH~nwVssvkwsp--~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 333 D-------------------------------------GSVVSQSLIGHKNWVSSVKWSP--TNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred C-------------------------------------CceeEEeeecchhhhhheecCC--CCceEEEEEecCCeEEEE
Confidence 1 1134567889999999999996 456678999999999999
Q ss_pred ecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 295 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
|+++.. ..+..+.+|.+.|.++.|+ ++.++++||.|.+|+|+.
T Consensus 374 DvRS~k--------~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 374 DVRSTK--------APLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EeccCC--------CcceeeccCCceEEEEecc--CCceEEeccCcceEEEec
Confidence 999974 4788999999999999995 556899999999999985
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-36 Score=217.98 Aligned_cols=287 Identities=14% Similarity=0.128 Sum_probs=239.2
Q ss_pred CCCCeeeeCCceeeeEEEEec--CCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 5 EAKPRRLRGHKATATCCIASR--DRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~--~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
.+...+..||+.+|..++|+| .+|-+|++++.||.-.+-+-+++..+.++.+|.+.|.+..++.+...-++++.|-+-
T Consensus 4 ~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadfta 83 (334)
T KOG0278|consen 4 RQTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTA 83 (334)
T ss_pred ccCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence 456778889999999999986 238899999999999998889999999999999999999999888888999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
++||.-++... ..+. |+.-|..++|+.|.++|++|+.++.++|||++.. .+..++. +|.+.|..+.|..
T Consensus 84 kvw~a~tgdel---hsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~----- 153 (334)
T KOG0278|consen 84 KVWDAVTGDEL---HSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCH----- 153 (334)
T ss_pred hhhhhhhhhhh---hhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEec-----
Confidence 99999887544 3332 5678999999999999999999999999999854 3567778 9999999999988
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
..+.+++.+.|++||+||.+++.....+.- +..+.++.++++|+++.
T Consensus 154 -------------------------------eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 154 -------------------------------EDKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQDGRILT 200 (334)
T ss_pred -------------------------------cCceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceeeccCCCEEE
Confidence 677888889999999999999887776544 36788999999999987
Q ss_pred Eeeeeee--cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee-ccccc
Q 018858 242 EMEILDQ--SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLN 318 (349)
Q Consensus 242 ~~~~~~~--~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~ 318 (349)
.+..... +......+++.+. -...|.+..++ |+..++++|++|..++.||..+++ .+.. ..+|.
T Consensus 201 ia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~---P~k~~fVaGged~~~~kfDy~Tge---------Ei~~~nkgh~ 267 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLH---PKKEFFVAGGEDFKVYKFDYNTGE---------EIGSYNKGHF 267 (334)
T ss_pred EecCceeEEeccccccceeecc-Ccccccccccc---CCCceEEecCcceEEEEEeccCCc---------eeeecccCCC
Confidence 5322211 2223334444443 23568888888 888999999999999999999985 3334 47899
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++|-++.|+| +|+..++|+.||+|++|.+
T Consensus 268 gpVhcVrFSP-dGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 268 GPVHCVRFSP-DGELYASGSEDGTIRLWQT 296 (334)
T ss_pred CceEEEEECC-CCceeeccCCCceEEEEEe
Confidence 9999999988 9999999999999999975
No 46
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-35 Score=213.61 Aligned_cols=254 Identities=17% Similarity=0.186 Sum_probs=208.2
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
--|+||..+++.+.++.+ |.+|++++.|.+..+|-..+|+.+.++.+|.+.|.++..+.+.+++++|+.|.++++||++
T Consensus 4 i~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 357899999999999998 9999999999999999998999999999999999999999999999999999999999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcC-----CCcEEEEEcC-------CceEeceeccccccceeEEEEcc
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIR-------QHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+++.+...+. ..+|..+.|++++++++...+ .+.|.++|++ ..++...+. .+.+.++.+-|.|
T Consensus 83 tGk~la~~k~----~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 83 TGKQLATWKT----NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGP 157 (327)
T ss_pred CCcEEEEeec----CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecc
Confidence 9866554443 478999999999998887654 3569999998 345566666 6778899999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
-++++++|..||.|..||+++++
T Consensus 158 ------------------------------------l~~~ii~Ghe~G~is~~da~~g~--------------------- 180 (327)
T KOG0643|consen 158 ------------------------------------LGETIIAGHEDGSISIYDARTGK--------------------- 180 (327)
T ss_pred ------------------------------------cCCEEEEecCCCcEEEEEcccCc---------------------
Confidence 79999999999999999999864
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec------------
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT------------ 304 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~------------ 304 (349)
+.+.....|...|+.+.++ ++..++++++.|.+-++||+.+.+.+.+
T Consensus 181 ------------------~~v~s~~~h~~~Ind~q~s---~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aai 239 (327)
T KOG0643|consen 181 ------------------ELVDSDEEHSSKINDLQFS---RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAI 239 (327)
T ss_pred ------------------eeeechhhhcccccccccc---CCcceEEecccCccceeeeccceeeEEEeeecccccceec
Confidence 3444445566677777777 6777777777777777777765443211
Q ss_pred ----------------------------------ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 305 ----------------------------------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 305 ----------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
....+.+....+|-++|++++|+| +|+..++|+.||.|++.-
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEE
Confidence 001123345568999999999999 999999999999999854
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=221.74 Aligned_cols=257 Identities=16% Similarity=0.249 Sum_probs=220.5
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
.++++..+|.||...|..+++++. ..|+++++.|+.|+.||++..+.++.+.+|-..|.+++.+|.-+.|++|+.|.++
T Consensus 181 atg~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~ 259 (460)
T KOG0285|consen 181 ATGQLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTI 259 (460)
T ss_pred ccCeEEEeecchhheeeeeeeccc-CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceE
Confidence 367888999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
+|||+++. ..+..+.+|...|..+.+.|....+++|+.|++|++||++.++....+. .|...+.+++.+|
T Consensus 260 RvWDiRtr---~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP------ 329 (460)
T KOG0285|consen 260 RVWDIRTR---ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHP------ 329 (460)
T ss_pred EEeeeccc---ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCC------
Confidence 99999975 4567778899999999999988899999999999999999999988888 8999999999999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
....|++++.|. |+-|++..+
T Consensus 330 ------------------------------~e~~fASas~dn-ik~w~~p~g---------------------------- 350 (460)
T KOG0285|consen 330 ------------------------------KENLFASASPDN-IKQWKLPEG---------------------------- 350 (460)
T ss_pred ------------------------------chhhhhccCCcc-ceeccCCcc----------------------------
Confidence 678888888774 899999875
Q ss_pred eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceE
Q 018858 243 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 322 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 322 (349)
..+..+.+|...|++++.. .| .++++|++.|.+.+||.+++..-+..+..... -...-...|+
T Consensus 351 ------------~f~~nlsgh~~iintl~~n---sD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-GSl~sEagI~ 413 (460)
T KOG0285|consen 351 ------------EFLQNLSGHNAIINTLSVN---SD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-GSLESEAGIF 413 (460)
T ss_pred ------------chhhccccccceeeeeeec---cC-ceEEEcCCceEEEEEecCcCcccccccccccC-Ccccccccee
Confidence 5556688999999999987 44 58899999999999999998543321100000 0112345688
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEee
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+.+|.. .+..|++|..|.+|++|.
T Consensus 414 as~fDk-tg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 414 ASCFDK-TGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEeecc-cCceEEeccCCcceEEEe
Confidence 888865 677899999999999996
No 48
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-32 Score=206.46 Aligned_cols=286 Identities=15% Similarity=0.148 Sum_probs=225.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC--CCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS--GKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~ 81 (349)
+++..+.|+.-.+.|.++.|+++ |.++++++.|..+++||..+++.+.++..+.-.+..++|......++.++. |.+
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 45677788877889999999998 899999999999999999999999999988889999999877777777776 789
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
|+..++.++ +.+..+.+|...|..++.+|-+..+++++.|++|++||++..++...+. ...-..++|.|
T Consensus 82 IryLsl~dN---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp----- 150 (311)
T KOG1446|consen 82 IRYLSLHDN---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDP----- 150 (311)
T ss_pred eEEEEeecC---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECC-----
Confidence 999999875 6678899999999999999999999999999999999999777655554 22334577888
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc-eeee---ecCCCCCCccceeeeeccc
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LNIS---RSKSTTKPLKGSQSTSKVN 237 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~---~~~~~~~~~~~~~~~~~~~ 237 (349)
.|.++|++.....|++||++.- +-+. ............+.|||||
T Consensus 151 -------------------------------~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG 199 (311)
T KOG1446|consen 151 -------------------------------EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG 199 (311)
T ss_pred -------------------------------CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC
Confidence 7999999998889999999974 2222 2333456778899999999
Q ss_pred cEEEEeeeee---ecCceeeeeeeeecCCCcc---eEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccccccee
Q 018858 238 IRDAEMEILD---QSGGKRLHLDYSVGGHTAA---ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL 311 (349)
Q Consensus 238 ~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~---i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 311 (349)
+.++...... ......+....++..+... .-...|+ ||++++++|+.||+|.+|+++++ ..+
T Consensus 200 K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft---Pds~Fvl~gs~dg~i~vw~~~tg---------~~v 267 (311)
T KOG1446|consen 200 KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT---PDSKFVLSGSDDGTIHVWNLETG---------KKV 267 (311)
T ss_pred CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC---CCCcEEEEecCCCcEEEEEcCCC---------cEe
Confidence 9998532211 1111233344455444321 2456677 99999999999999999999998 555
Q ss_pred eeccc-cccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 312 IKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 312 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..+.+ +..++.++.|+|. +..-++.+..+.+|=
T Consensus 268 ~~~~~~~~~~~~~~~fnP~---~~mf~sa~s~l~fw~ 301 (311)
T KOG1446|consen 268 AVLRGPNGGPVSCVRFNPR---YAMFVSASSNLVFWL 301 (311)
T ss_pred eEecCCCCCCccccccCCc---eeeeeecCceEEEEe
Confidence 55555 7889999999874 566666777888883
No 49
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-34 Score=213.20 Aligned_cols=245 Identities=18% Similarity=0.278 Sum_probs=204.9
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC--EEEEEeCCCeEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIYVSSGKEVK 83 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~ 83 (349)
.++..+..|.++|++++.+ +.++++|+.|.+|+|||+.....+..+-.|.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 34 ~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 3466778999999999996 68999999999999999999998999999999999999988664 899999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+|+... ...+..+.+|...|+.++++|.+++.++.+.|+.++.||+-.|+.-..++..+ ..+.+.|+|
T Consensus 111 iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~------- 178 (362)
T KOG0294|consen 111 IWRVGS---WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSP------- 178 (362)
T ss_pred EEEcCC---eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcC-------
Confidence 999874 57778888899999999999999999999999999999999887655554223 334489998
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.|.+++++..+ .|-+|.+.+.
T Consensus 179 -----------------------------~Gd~F~v~~~~-~i~i~q~d~A----------------------------- 199 (362)
T KOG0294|consen 179 -----------------------------QGDHFVVSGRN-KIDIYQLDNA----------------------------- 199 (362)
T ss_pred -----------------------------CCCEEEEEecc-EEEEEecccH-----------------------------
Confidence 78888888765 5889998863
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
.....+. ....+.++.|. ++.+|++|+.|+.|++||..+. .++..+.+|..+|..
T Consensus 200 -----------~v~~~i~-~~~r~l~~~~l----~~~~L~vG~d~~~i~~~D~ds~---------~~~~~~~AH~~RVK~ 254 (362)
T KOG0294|consen 200 -----------SVFREIE-NPKRILCATFL----DGSELLVGGDNEWISLKDTDSD---------TPLTEFLAHENRVKD 254 (362)
T ss_pred -----------hHhhhhh-ccccceeeeec----CCceEEEecCCceEEEeccCCC---------ccceeeecchhheee
Confidence 1212222 22456777775 7889999999999999999986 678889999999999
Q ss_pred EEe-ecCCCCcEEEeeCCCeEEEeeCC
Q 018858 324 LCT-TPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 324 ~~~-~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+ ..+++.+|+++|+||.|+|||++
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred eEEEecCCceEEEEeccCceEEEEEcc
Confidence 984 33467899999999999999974
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-34 Score=242.31 Aligned_cols=254 Identities=16% Similarity=0.191 Sum_probs=197.7
Q ss_pred CCeeee-CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC--------------------------------C-----
Q 018858 7 KPRRLR-GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--------------------------------K----- 48 (349)
Q Consensus 7 ~~~~l~-~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~--------------------------------~----- 48 (349)
..+.+. +|++.|+++.|+++ |+|||+||.||.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EeeccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 345566 89999999999999 99999999999999998754 0
Q ss_pred -----------------------cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccc
Q 018858 49 -----------------------DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEE 105 (349)
Q Consensus 49 -----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 105 (349)
++++.+.+|...|..+.|+.+ ++|++++.|.+|++|++... .++..+. |.+.
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~---~CL~~F~-Hndf 411 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK---ECLKVFS-HNDF 411 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc---ceeeEEe-cCCe
Confidence 122345679999999999965 58999999999999999864 4555554 7799
Q ss_pred eEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeec
Q 018858 106 INQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAI 184 (349)
Q Consensus 106 v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (349)
|+|++|+| |.+||++|+-||.|+||++...+++.-.. -...|++++|.|
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~P---------------------------- 461 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSP---------------------------- 461 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEecc----------------------------
Confidence 99999999 67999999999999999999888766554 347899999999
Q ss_pred CcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCC
Q 018858 185 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 264 (349)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 264 (349)
+|+..++|+.+|.+++|+....+........ ....+... |.
T Consensus 462 --------dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~------------------------------~~~~Kk~~-~~ 502 (712)
T KOG0283|consen 462 --------DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR------------------------------LHNKKKKQ-GK 502 (712)
T ss_pred --------CCceEEEEEeccEEEEEEccCCeEEEeeeEe------------------------------eccCcccc-Cc
Confidence 8999999999999999999875332211100 01111122 33
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc--ceEEEEeecCCCCcEEEeeCCCe
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDTSKV 342 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~ 342 (349)
.|+.+.|.|..+ ..+++.+.|..|||||.+.. .++..+.++.. .-....|.. ||++|+++++|..
T Consensus 503 -rITG~Q~~p~~~--~~vLVTSnDSrIRI~d~~~~---------~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 503 -RITGLQFFPGDP--DEVLVTSNDSRIRIYDGRDK---------DLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSW 569 (712)
T ss_pred -eeeeeEecCCCC--CeEEEecCCCceEEEeccch---------hhhhhhcccccCCcceeeeEcc-CCCEEEEeecCce
Confidence 899999996333 35777778999999999776 55556665432 234446766 9999999999999
Q ss_pred EEEeeC
Q 018858 343 VKVYSI 348 (349)
Q Consensus 343 i~iw~~ 348 (349)
|++|++
T Consensus 570 VYiW~~ 575 (712)
T KOG0283|consen 570 VYIWKN 575 (712)
T ss_pred EEEEeC
Confidence 999996
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-34 Score=241.82 Aligned_cols=250 Identities=16% Similarity=0.194 Sum_probs=212.9
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
.++.+|..|.++|+.++|+|+ +.++++||.|-.|++|++.+.+++.++.+|-.-|..+.|++.-..|+++|.|.+|+||
T Consensus 42 tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW 120 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW 120 (1202)
T ss_pred hHHhhhhccCCccceeeecCC-CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence 467788999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE----------------------------
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL---------------------------- 137 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------------- 137 (349)
+..+. ..+..+.+|...|.|..|+|....+++++-|.+|++||+..-+.
T Consensus 121 Nwqsr---~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 121 NWQSR---KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred eccCC---ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 99975 55677788999999999999999999999999999999862111
Q ss_pred -eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 138 -YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 138 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
...+. +|...|..++|+| .-.++++|+.|..|++|.....+
T Consensus 198 VK~VLE-GHDRGVNwaAfhp------------------------------------TlpliVSG~DDRqVKlWrmnetK- 239 (1202)
T KOG0292|consen 198 VKHVLE-GHDRGVNWAAFHP------------------------------------TLPLIVSGADDRQVKLWRMNETK- 239 (1202)
T ss_pred eeeeec-ccccccceEEecC------------------------------------CcceEEecCCcceeeEEEecccc-
Confidence 11233 6777777777777 67899999999999999998521
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEec
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 296 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~ 296 (349)
...+.+..+|...|.++-|+ |....+++.|+|+.|+|||+
T Consensus 240 -------------------------------------aWEvDtcrgH~nnVssvlfh---p~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 240 -------------------------------------AWEVDTCRGHYNNVSSVLFH---PHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred -------------------------------------ceeehhhhcccCCcceEEec---CccceeEecCCCccEEEEec
Confidence 13456778999999999999 88899999999999999999
Q ss_pred CCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 297 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
... ..++.+...++.-+.++.+| ..+ |++++-|+-+.||.+
T Consensus 280 ~kR---------t~v~tfrrendRFW~laahP-~lN-LfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 280 TKR---------TSVQTFRRENDRFWILAAHP-ELN-LFAAGHDSGMIVFKL 320 (1202)
T ss_pred ccc---------cceeeeeccCCeEEEEEecC-Ccc-eeeeecCCceEEEEE
Confidence 997 56667777778889999988 554 555566666666654
No 52
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-34 Score=206.90 Aligned_cols=243 Identities=17% Similarity=0.268 Sum_probs=200.6
Q ss_pred eEEEEecCCCceEEEeC-------CCCcEEEEECCCCcEEEEeec--CCCCeEEEEEecCC-CEEEEEeCCCeEEEEEcc
Q 018858 19 TCCIASRDRPGFVASSG-------EDGCICWFDLRSKDVQLVTDV--GNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~-------~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~ 88 (349)
.++.|+|--.++|+.+. ..|.+.|.++...+-+..+.. -...+..++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46788884334444332 368899999865544443332 45789999999854 567888999999999965
Q ss_pred CCCcccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
. ...++..++.|+.+|.++.|++. .+.+++++.|++|++|+...++.+.++. +|...|+..+|+|.
T Consensus 92 ~--~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~---------- 158 (311)
T KOG0277|consen 92 M--PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPH---------- 158 (311)
T ss_pred C--CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCC----------
Confidence 3 34688889999999999999984 4678888999999999999899999999 99999999999995
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
.++++++++.|+.+++||++..
T Consensus 159 -------------------------~~nlfas~Sgd~~l~lwdvr~~--------------------------------- 180 (311)
T KOG0277|consen 159 -------------------------IPNLFASASGDGTLRLWDVRSP--------------------------------- 180 (311)
T ss_pred -------------------------CCCeEEEccCCceEEEEEecCC---------------------------------
Confidence 6899999999999999999863
Q ss_pred ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee
Q 018858 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
.....+..|...|.++.|+. .+.+.|+||+.|+.||+||+++.. .++..+.+|.-.|..+.|+
T Consensus 181 -------gk~~~i~ah~~Eil~cdw~k--y~~~vl~Tg~vd~~vr~wDir~~r--------~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 181 -------GKFMSIEAHNSEILCCDWSK--YNHNVLATGGVDNLVRGWDIRNLR--------TPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred -------CceeEEEeccceeEeecccc--cCCcEEEecCCCceEEEEehhhcc--------ccceeecCCceEEEEEecC
Confidence 11223778888999999996 567899999999999999999875 4567779999999999999
Q ss_pred cCCCCcEEEeeCCCeEEEeeCC
Q 018858 328 PTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|.....|++++.|-+++|||..
T Consensus 244 ph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred cchhhHhhhccccceEEecccc
Confidence 9888899999999999999963
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.4e-33 Score=205.32 Aligned_cols=237 Identities=16% Similarity=0.211 Sum_probs=194.1
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
+|+..|++++|+|. +++|++++.|.++.||.-..+ +++.++++|...|.+++|+++|++||++++|+.|.||.+...
T Consensus 59 ~hkrsVRsvAwsp~-g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPH-GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred cchheeeeeeecCC-CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 69999999999999 899999999999999987654 568899999999999999999999999999999999999987
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC---CceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR---QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
........++.|...|..+.|+|...+|++++.|.+|++|+-. ...+.+++. +|.+.|.+++|+|
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~----------- 205 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDN----------- 205 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecC-----------
Confidence 7888888999999999999999999999999999999999866 457888999 9999999999999
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
.|..|++++.|++++||.+.+. ........+..++|. ...|++.+..+
T Consensus 206 -------------------------~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~ 253 (312)
T KOG0645|consen 206 -------------------------IGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDD 253 (312)
T ss_pred -------------------------CCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCC
Confidence 7899999999999999997632 222233445566676 33344322221
Q ss_pred ecC---------ceeeeee-eeecCCCcceEEEEEeeecC-CccEEEEeeCCCeEEEEecC
Q 018858 248 QSG---------GKRLHLD-YSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 248 ~~~---------~~~~~~~-~~~~~h~~~i~~i~~~~~~~-~~~~l~s~~~d~~i~vwd~~ 297 (349)
... .....++ +.-..|...|+++.|. | ..++|++|+.||.|++|.+.
T Consensus 254 ~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~---p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 254 AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN---PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEEEEecCCCCCchHHHHHhhhcccccccceEEEc---CCCCCceeecCCCceEEEEEec
Confidence 110 1111222 2334688899999999 5 47899999999999999875
No 54
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.4e-35 Score=222.98 Aligned_cols=282 Identities=17% Similarity=0.184 Sum_probs=225.7
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
.+..|.||.+.|.|++=+|..-..+++|+.||.|++||+....++.++++|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 46678999999999999998447899999999999999999999999999999999999986 6789999999999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
++- .++.++-+ +..+..+.-+..+..++++++ .|.|||.+-..++..+. -....|.++.|+|.
T Consensus 136 ~~~----~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms-wG~Dti~svkfNpv--------- 198 (433)
T KOG0268|consen 136 IDG----PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS-WGADSISSVKFNPV--------- 198 (433)
T ss_pred ccC----Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceee-cCCCceeEEecCCC---------
Confidence 874 24444332 356777777777888999887 59999998888888888 66778999999994
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
....|++++.|+.|.+||++....+.... .......++|+| ..+..++++.
T Consensus 199 --------------------------ETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnP-eafnF~~a~E 249 (433)
T KOG0268|consen 199 --------------------------ETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNP-EAFNFVAANE 249 (433)
T ss_pred --------------------------cchheeeeccCCceEEEecccCCccceee--eeccccceecCc-cccceeeccc
Confidence 56788899999999999999875544332 234567899999 5555556666
Q ss_pred eecCce-----eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 247 DQSGGK-----RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 247 ~~~~~~-----~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
|..+.. -..++....+|.+.|.++.|+ |.|+-+++||.|.+|+||..+.+... -+ -...--..|
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs---ptG~EfvsgsyDksIRIf~~~~~~SR-------di-YhtkRMq~V 318 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS---PTGQEFVSGSYDKSIRIFPVNHGHSR-------DI-YHTKRMQHV 318 (433)
T ss_pred cccceehhhhhhcccchhhcccceeEEEeccC---CCcchhccccccceEEEeecCCCcch-------hh-hhHhhhhee
Confidence 654322 235566778899999999999 89999999999999999999886321 11 111123468
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.++.|+. |.+++++||+|+.|++|.-
T Consensus 319 ~~Vk~S~-Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 319 FCVKYSM-DSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred eEEEEec-cccEEEecCCCcceeeeec
Confidence 9999976 9999999999999999973
No 55
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=211.13 Aligned_cols=259 Identities=21% Similarity=0.361 Sum_probs=210.8
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC------------C------cEEEEeecCCCCeEEEEEec
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS------------K------DVQLVTDVGNGPVTSLCFKS 68 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~~ 68 (349)
+-..+..|+.++.+-+|+|| |.+++||+.|..|+|.|++. + -.++++..|..+|.++.|+|
T Consensus 104 Et~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred ceEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 45678889999999999999 99999999999999999871 1 23677888999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec--cccc
Q 018858 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHS 146 (349)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~ 146 (349)
....|++++.|++|++||+......+.++.++. ..+|.++.|+|.|.++++|.+-..+++||+.+.++.-.-. ..|.
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhc-cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 999999999999999999987555555555542 4689999999999999999999999999999887654322 2688
Q ss_pred cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC
Q 018858 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 226 (349)
Q Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 226 (349)
+.|+++.+++ .+++.++|+.||.|++||--++
T Consensus 262 ~ai~~V~Ys~------------------------------------t~~lYvTaSkDG~IklwDGVS~------------ 293 (430)
T KOG0640|consen 262 GAITQVRYSS------------------------------------TGSLYVTASKDGAIKLWDGVSN------------ 293 (430)
T ss_pred cceeEEEecC------------------------------------CccEEEEeccCCcEEeeccccH------------
Confidence 8999999999 8999999999999999998876
Q ss_pred ccceeeeeccccEEEEeeeeeecCceeeeeeeeec-CCC-cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG-GHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~-~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 304 (349)
+++.++. .|. ..|.+..|. .+++|+++.+.|..+++|.+.++..+..
T Consensus 294 ----------------------------rCv~t~~~AH~gsevcSa~Ft---kn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 294 ----------------------------RCVRTIGNAHGGSEVCSAVFT---KNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred ----------------------------HHHHHHHhhcCCceeeeEEEc---cCCeEEeecCCcceeeeeeecCCceEEE
Confidence 3444432 343 468888888 8999999999999999999887765432
Q ss_pred c----------------------------------------cccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEE
Q 018858 305 S----------------------------------------INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 305 ~----------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 344 (349)
. ...+......+|++.+.++..+| .+.-+++|+.|-.++
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~raR 421 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDFRAR 421 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeecccceee
Confidence 0 00122223468999999999988 555799999999999
Q ss_pred Eee
Q 018858 345 VYS 347 (349)
Q Consensus 345 iw~ 347 (349)
+|-
T Consensus 422 FWy 424 (430)
T KOG0640|consen 422 FWY 424 (430)
T ss_pred eee
Confidence 995
No 56
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.1e-31 Score=228.39 Aligned_cols=246 Identities=12% Similarity=0.174 Sum_probs=188.1
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE-------------EEeecCCCCeEEEEEec-CCCEEEEEeCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-------------LVTDVGNGPVTSLCFKS-GNEDIIYVSSG 79 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 79 (349)
|-..|.....+++ +..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|
T Consensus 19 ~~~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWD-CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ceeccccccccCC-CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 4455666666666 566777777777777775433221 24678999999999999 88899999999
Q ss_pred CeEEEEEccCCCc----ccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 KEVKSFDVHMPAS----WRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
+.|++||+.++.. ...+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+. .|...|.+++|
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla~ 176 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLEW 176 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEEE
Confidence 9999999976421 23456678899999999999975 789999999999999999999888888 89999999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
+| ++.+|++++.|+.|++||++++
T Consensus 177 sp------------------------------------dG~lLatgs~Dg~IrIwD~rsg-------------------- 200 (493)
T PTZ00421 177 NL------------------------------------DGSLLCTTSKDKKLNIIDPRDG-------------------- 200 (493)
T ss_pred EC------------------------------------CCCEEEEecCCCEEEEEECCCC--------------------
Confidence 99 7999999999999999999975
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeecCCCcc-eEEEEEeeecCCccEEEEee----CCCeEEEEecCCCcceecccccc
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA-ASCVAFSMFGERGKYLISGG----NDKLVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~i~~~~~~~~~~~l~s~~----~d~~i~vwd~~~~~~~~~~~~~~ 309 (349)
..+..+.+|.+. +..+.|. +++..+++++ .|+.|++||+++.. .
T Consensus 201 --------------------~~v~tl~~H~~~~~~~~~w~---~~~~~ivt~G~s~s~Dr~VklWDlr~~~--------~ 249 (493)
T PTZ00421 201 --------------------TIVSSVEAHASAKSQRCLWA---KRKDLIITLGCSKSQQRQIMLWDTRKMA--------S 249 (493)
T ss_pred --------------------cEEEEEecCCCCcceEEEEc---CCCCeEEEEecCCCCCCeEEEEeCCCCC--------C
Confidence 344556677654 3466777 6766776654 47999999998753 2
Q ss_pred eeeecccc-ccceEEEEeecCCCCcEEEee-CCCeEEEeeCC
Q 018858 310 LLIKNINL-NKKVNWLCTTPTESENLVVCD-TSKVVKVYSIS 349 (349)
Q Consensus 310 ~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~~ 349 (349)
.+.....+ ...+....|++ ++++|++++ .|+.|++||+.
T Consensus 250 p~~~~~~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred ceeEeccCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEEee
Confidence 22222223 33344445555 888888887 59999999974
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=234.96 Aligned_cols=246 Identities=20% Similarity=0.227 Sum_probs=208.7
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEEC-CCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL-RSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
..+.+.+|...|.+++|+|+ ++++++++.|++|++||+ ..+..++++.+|...|++++|+|+++.+++|+.|++|+||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred hhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence 67778899999999999999 899999999999999999 5557889999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce--Eeceecccccc--ceeEEEEccCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSS--ICSSVQFIPWKPWE 161 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--~v~~~~~~~~~~~~ 161 (349)
|++++ ..+..+.+|.+.|++++|++++++|++++.|+.|++||+.++. ++..+. .+.. +++++.|+|
T Consensus 274 d~~~~---~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~fsp----- 344 (456)
T KOG0266|consen 274 DVRTG---ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQFSP----- 344 (456)
T ss_pred eccCC---eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeeccc-CCCCCCceeEEEECC-----
Confidence 99985 5566777788999999999999999999999999999999998 556666 4444 489999999
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC--ccceeeeeccccE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP--LKGSQSTSKVNIR 239 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 239 (349)
++.+++++..|+.+++||++.............. .+.....++.+++
T Consensus 345 -------------------------------~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 345 -------------------------------NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred -------------------------------CCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 8999999999999999999988877766665554 3344556778888
Q ss_pred EEEeeeeeecC----ceeeeeeeeecCC-CcceEEEEEeeecCCccEEEEee--CCCeEEEEecC
Q 018858 240 DAEMEILDQSG----GKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCS 297 (349)
Q Consensus 240 ~~~~~~~~~~~----~~~~~~~~~~~~h-~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~ 297 (349)
+. .+..+..+ ......+..+.+| ...+..+.++ +..+++++++ .|+.+++|..+
T Consensus 394 i~-sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~---~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 394 IY-SGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH---PTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EE-EEeCCceEEEEeCCccchhhhhcCCCCCceeccccC---CCcCeeeecCcCCCceEEEecCC
Confidence 87 44444432 2234566778889 8889999999 8889999998 78999999764
No 58
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-32 Score=201.93 Aligned_cols=253 Identities=18% Similarity=0.184 Sum_probs=211.0
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC----
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---- 78 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---- 78 (349)
..++.+.++.||++.|+|++.+.+ .+.++||+.|.++++||+++|+.+..++ ...+|..+.|+++|++++.+..
T Consensus 40 ~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 40 LNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMG 117 (327)
T ss_pred cCCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcC
Confidence 357889999999999999999998 8999999999999999999999999988 5678999999999998887764
Q ss_pred -CCeEEEEEccCCC----cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE-eceeccccccceeEE
Q 018858 79 -GKEVKSFDVHMPA----SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSV 152 (349)
Q Consensus 79 -dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~ 152 (349)
.+.|.++|++... ...++..+..+...++.+-|.|-+++|++|.++|.|.+||+++++. +..-+ .|...|+.+
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~-~h~~~Ind~ 196 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE-EHSSKINDL 196 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh-hhccccccc
Confidence 3689999998532 2233445556678999999999999999999999999999999754 44555 789999999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
+++| +..++++++.|.+-++||.++-+.+...... .++.+.+
T Consensus 197 q~s~------------------------------------d~T~FiT~s~Dttakl~D~~tl~v~Kty~te--~PvN~aa 238 (327)
T KOG0643|consen 197 QFSR------------------------------------DRTYFITGSKDTTAKLVDVRTLEVLKTYTTE--RPVNTAA 238 (327)
T ss_pred cccC------------------------------------CcceEEecccCccceeeeccceeeEEEeeec--cccccee
Confidence 9999 7899999999999999999987777665443 6788889
Q ss_pred eeccccEEEEeeeeeecCce-----------------eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 233 TSKVNIRDAEMEILDQSGGK-----------------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
++|-...++..|..+..... ..+.+..+++|-++|++++|+ |+|+..++|++||.|++.-
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---PdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---PDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC---CCCcccccCCCCceEEEEE
Confidence 99988887765555443221 112335678999999999999 9999999999999999987
Q ss_pred cCCC
Q 018858 296 CSRF 299 (349)
Q Consensus 296 ~~~~ 299 (349)
....
T Consensus 316 Fd~~ 319 (327)
T KOG0643|consen 316 FDSN 319 (327)
T ss_pred eccc
Confidence 7653
No 59
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.5e-31 Score=227.44 Aligned_cols=228 Identities=15% Similarity=0.185 Sum_probs=177.9
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-------cEEEEeecCCCCeEEEEEecCC-CEEEEEeCCCe
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKE 81 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 81 (349)
.+.+|.+.|++++|+|.++++|++|+.|++|++||+.++ +.+..+.+|...|.+++|+|++ ++|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 578999999999999943789999999999999999764 3467788999999999999975 68999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccc-eeEEEEccCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI-CSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~ 160 (349)
|++||+++++ .+..+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+. .|.+. ...+.|.+
T Consensus 150 VrIWDl~tg~---~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~---- 221 (493)
T PTZ00421 150 VNVWDVERGK---AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAK---- 221 (493)
T ss_pred EEEEECCCCe---EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcC----
Confidence 9999999764 345566688899999999999999999999999999999999888887 77654 34667877
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc----CCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK----GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
++..+++++ .|+.|++||+++..
T Consensus 222 --------------------------------~~~~ivt~G~s~s~Dr~VklWDlr~~~--------------------- 248 (493)
T PTZ00421 222 --------------------------------RKDLIITLGCSKSQQRQIMLWDTRKMA--------------------- 248 (493)
T ss_pred --------------------------------CCCeEEEEecCCCCCCeEEEEeCCCCC---------------------
Confidence 455555543 47999999998631
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecC-CCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeec
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKN 314 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 314 (349)
.+...... +...+....|+ +++++|++++ .|+.|++||+.++. +....
T Consensus 249 ------------------~p~~~~~~d~~~~~~~~~~d---~d~~~L~lggkgDg~Iriwdl~~~~---------~~~~~ 298 (493)
T PTZ00421 249 ------------------SPYSTVDLDQSSALFIPFFD---EDTNLLYIGSKGEGNIRCFELMNER---------LTFCS 298 (493)
T ss_pred ------------------CceeEeccCCCCceEEEEEc---CCCCEEEEEEeCCCeEEEEEeeCCc---------eEEEe
Confidence 11112221 23345556777 8999998887 59999999999873 32222
Q ss_pred -cccccceEEEEeec
Q 018858 315 -INLNKKVNWLCTTP 328 (349)
Q Consensus 315 -~~~~~~v~~~~~~~ 328 (349)
..+..++..+++.|
T Consensus 299 ~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 299 SYSSVEPHKGLCMMP 313 (493)
T ss_pred eccCCCCCcceEecc
Confidence 22445667777766
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-32 Score=197.60 Aligned_cols=246 Identities=19% Similarity=0.215 Sum_probs=205.7
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
.+.++++..+|..+|..++.+.+ ...+++|+.|..+.+||+.+|+.++.+.+|...|..++|+.+...+++|+.|.+++
T Consensus 48 rg~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r 126 (307)
T KOG0316|consen 48 RGALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVR 126 (307)
T ss_pred ccceeeeecCCCceeeecccccc-ccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeE
Confidence 45688999999999999999998 78899999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||.++. ..++++.+....+.|.++..+ +..|++|+.||+++.||++.|+...-.- ..+|++++|++
T Consensus 127 ~wDCRS~-s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~------- 193 (307)
T KOG0316|consen 127 LWDCRSR-SFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSK------- 193 (307)
T ss_pred EEEcccC-CCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecC-------
Confidence 9999865 356777776667889888875 5689999999999999999998765543 46799999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
+++..+.++.|+++++.|-.++
T Consensus 194 -----------------------------d~nc~La~~l~stlrLlDk~tG----------------------------- 215 (307)
T KOG0316|consen 194 -----------------------------DGNCSLASSLDSTLRLLDKETG----------------------------- 215 (307)
T ss_pred -----------------------------CCCEEEEeeccceeeecccchh-----------------------------
Confidence 8999999999999999999886
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEE--EeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc-
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVA--FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK- 320 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~--~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~- 320 (349)
+++..+++|...=+.+. ++ .....+++|++||.|++||+... .++..+..+...
T Consensus 216 -----------klL~sYkGhkn~eykldc~l~---qsdthV~sgSEDG~Vy~wdLvd~---------~~~sk~~~~~~v~ 272 (307)
T KOG0316|consen 216 -----------KLLKSYKGHKNMEYKLDCCLN---QSDTHVFSGSEDGKVYFWDLVDE---------TQISKLSVVSTVI 272 (307)
T ss_pred -----------HHHHHhcccccceeeeeeeec---ccceeEEeccCCceEEEEEeccc---------eeeeeeccCCcee
Confidence 67778888876544443 44 55678999999999999999987 566666666666
Q ss_pred eEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 321 VNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
+.+++++|...+ ++++.. +.+..|
T Consensus 273 v~dl~~hp~~~~-f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 273 VTDLSCHPTMDD-FITATG-HGDLFW 296 (307)
T ss_pred EEeeecccCccc-eeEecC-Cceece
Confidence 889999996655 444433 334444
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-32 Score=223.96 Aligned_cols=241 Identities=16% Similarity=0.239 Sum_probs=209.9
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
.+.+.|+++.|+++ |.+|++|..+|.+.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.++.|..+|++..+
T Consensus 215 ~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 215 FGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred cCCCceEEEEECCC-CCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch
Confidence 34789999999999 89999999999999999999998999988 99999999998 6689999999999999999754
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
... ..+.+|...|..+.|++++.++|+|+.|+.+.|||....+++..+. .|...|.+++|+|.
T Consensus 292 ~~~--~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awcP~-------------- 354 (484)
T KOG0305|consen 292 HVV--STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWCPW-------------- 354 (484)
T ss_pred hhh--hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeCCC--------------
Confidence 332 2477899999999999999999999999999999998888888888 89999999999996
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEc--CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 249 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
...+||+|+ .|+.|++||..++
T Consensus 355 ---------------------q~~lLAsGGGs~D~~i~fwn~~~g----------------------------------- 378 (484)
T KOG0305|consen 355 ---------------------QSGLLATGGGSADRCIKFWNTNTG----------------------------------- 378 (484)
T ss_pred ---------------------ccCceEEcCCCcccEEEEEEcCCC-----------------------------------
Confidence 678899876 7999999999975
Q ss_pred CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEe--eCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee
Q 018858 250 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG--GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 250 ~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
..+..+. -...|..|.|+ +..+-|+++ ..++.|.||++.+. ..+..+.+|...|..++++
T Consensus 379 -----~~i~~vd-tgsQVcsL~Ws---k~~kEi~sthG~s~n~i~lw~~ps~---------~~~~~l~gH~~RVl~la~S 440 (484)
T KOG0305|consen 379 -----ARIDSVD-TGSQVCSLIWS---KKYKELLSTHGYSENQITLWKYPSM---------KLVAELLGHTSRVLYLALS 440 (484)
T ss_pred -----cEecccc-cCCceeeEEEc---CCCCEEEEecCCCCCcEEEEecccc---------ceeeeecCCcceeEEEEEC
Confidence 3333333 24679999999 666555543 36789999999997 7788999999999999998
Q ss_pred cCCCCcEEEeeCCCeEEEeeC
Q 018858 328 PTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~iw~~ 348 (349)
| ||..+++|+.|.++++|++
T Consensus 441 P-dg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 441 P-DGETIVTGAADETLRFWNL 460 (484)
T ss_pred C-CCCEEEEecccCcEEeccc
Confidence 8 8999999999999999986
No 62
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=7.1e-31 Score=224.43 Aligned_cols=229 Identities=15% Similarity=0.144 Sum_probs=176.8
Q ss_pred eCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecC-CCEEEEEeCCCeEEEEEccCCCc-c----cceeeccCcccceE
Q 018858 34 SGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDVHMPAS-W----RPLESYNYNKEEIN 107 (349)
Q Consensus 34 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~-~----~~~~~~~~~~~~v~ 107 (349)
|+.++.+++|+......+..+.+|..+|.+++|+|+ +++|++|+.|+.|++||+.++.. . .++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998877778889999999999999996 78999999999999999986421 1 23345677889999
Q ss_pred EEEEccCCCE-EEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCc
Q 018858 108 QIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186 (349)
Q Consensus 108 ~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
+++|+|++.. |++++.|+.|++||+++++....+. +...|.+++|+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~Slswsp------------------------------ 177 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNI------------------------------ 177 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECC------------------------------
Confidence 9999998865 5789999999999999988776665 557899999999
Q ss_pred ccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcc
Q 018858 187 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA 266 (349)
Q Consensus 187 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 266 (349)
+|.+|++++.|+.|++||++++ ..+..+.+|.+.
T Consensus 178 ------dG~lLat~s~D~~IrIwD~Rsg----------------------------------------~~i~tl~gH~g~ 211 (568)
T PTZ00420 178 ------KGNLLSGTCVGKHMHIIDPRKQ----------------------------------------EIASSFHIHDGG 211 (568)
T ss_pred ------CCCEEEEEecCCEEEEEECCCC----------------------------------------cEEEEEecccCC
Confidence 8999999999999999999975 344566778765
Q ss_pred eEEEEEee--ecCCccEEEEeeCCC----eEEEEecCCCcceecccccceeeecc--ccccceEEEEeecCCCCcEEEee
Q 018858 267 ASCVAFSM--FGERGKYLISGGNDK----LVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 267 i~~i~~~~--~~~~~~~l~s~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
+....+.. +++++.+|++++.|+ .|+|||++... ..+.... .+.+.+.. .+.+.++.++++|+
T Consensus 212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~--------~pl~~~~ld~~~~~L~p-~~D~~tg~l~lsGk 282 (568)
T PTZ00420 212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT--------SALVTMSIDNASAPLIP-HYDESTGLIYLIGK 282 (568)
T ss_pred ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC--------CceEEEEecCCccceEE-eeeCCCCCEEEEEE
Confidence 44332211 116888999888764 79999999642 2332222 22222222 34465788899999
Q ss_pred CCCeEEEeeCC
Q 018858 339 TSKVVKVYSIS 349 (349)
Q Consensus 339 ~dg~i~iw~~~ 349 (349)
.|+.|++|++.
T Consensus 283 GD~tIr~~e~~ 293 (568)
T PTZ00420 283 GDGNCRYYQHS 293 (568)
T ss_pred CCCeEEEEEcc
Confidence 99999999973
No 63
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.5e-32 Score=206.11 Aligned_cols=282 Identities=11% Similarity=0.084 Sum_probs=217.5
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
.+++.+..+.+|++.|+|+.|+.+ +.+||||+.+|.|+||+..++.....+...-..+.=+.|+|.+..|+.|+.||.+
T Consensus 94 ~~ge~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsv 172 (399)
T KOG0296|consen 94 STGEFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSV 172 (399)
T ss_pred cCCcceeEecCCCCceEEEEEccC-ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcE
Confidence 356788999999999999999998 8999999999999999999999888887666778889999999999999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC-
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE- 161 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 161 (349)
.+|.+.+. ...+.+.+|..++++=.|.|+|+.++++..||+|++||+++++++..+.........++.++..+..+
T Consensus 173 Wmw~ip~~---~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 173 WMWQIPSQ---ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred EEEECCCc---ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 99999864 44566778999999999999999999999999999999999998877762223344555555432211
Q ss_pred -CCCCCC------------------CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC
Q 018858 162 -GLPENN------------------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 222 (349)
Q Consensus 162 -~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 222 (349)
+..+.. .+.........+.++.+.|.. ..=.+.|+|+-||+|.|||+...+.....
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s---s~lpL~A~G~vdG~i~iyD~a~~~~R~~c-- 324 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS---SKLPLAACGSVDGTIAIYDLAASTLRHIC-- 324 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc---cccchhhcccccceEEEEecccchhheec--
Confidence 111111 111111122333444444421 14467899999999999999875544433
Q ss_pred CCCCccceeeeeccccEEEE---eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 223 TTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
+.+..+..+.|-+ ..++++ .|....+..+..++...+.+|...|.+++++ |+.++++|+|.|++.+||+++
T Consensus 325 ~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls---~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 325 EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS---PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc---CCCcEEEEecCCCeEEEEecC
Confidence 3345588889998 555543 3444555667788999999999999999999 899999999999999999875
No 64
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.6e-32 Score=202.48 Aligned_cols=269 Identities=14% Similarity=0.171 Sum_probs=211.5
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-CcE-EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
-.+.|.+++|||....+++.++.||+|++|+++. +.. -+....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 4678999999996466777999999999999986 333 24455689999999999999999999999999999999863
Q ss_pred cccceeeccCcccceEEEEEccCCC--EEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSS--FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
......|..+|..+.|-+... .|++|+.|++|+.||+|...++.++. ....++++...
T Consensus 106 ----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~-------------- 165 (347)
T KOG0647|consen 106 ----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVL-------------- 165 (347)
T ss_pred ----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhcc--------------
Confidence 234556889999999987654 89999999999999999998888887 55677777653
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee-eecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
..+++++..+..|.+|+++++... .....+.+.++++++..+|..-.+ .|+.++
T Consensus 166 ------------------------~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a-lGsiEG 220 (347)
T KOG0647|consen 166 ------------------------YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA-LGSIEG 220 (347)
T ss_pred ------------------------CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE-eeeecc
Confidence 367899999999999999876543 366777888999999888877665 333332
Q ss_pred cCce------eeeeeeeecCCC---------cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 249 SGGK------RLHLDYSVGGHT---------AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 249 ~~~~------~~~~~~~~~~h~---------~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
.... ....-.+++.|. ..|++|+|+ |....|+|+|.||++.+||-... ..+..
T Consensus 221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh---P~hgtlvTaGsDGtf~FWDkdar---------~kLk~ 288 (347)
T KOG0647|consen 221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH---PVHGTLVTAGSDGTFSFWDKDAR---------TKLKT 288 (347)
T ss_pred eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee---cccceEEEecCCceEEEecchhh---------hhhhc
Confidence 2111 112234455554 268889999 77789999999999999998876 56667
Q ss_pred ccccccceEEEEeecCCCCcEEEe-eCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVC-DTS 340 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~-~~d 340 (349)
...|..+|++.+|+. +|.+++-+ +.|
T Consensus 289 s~~~~qpItcc~fn~-~G~ifaYA~gYD 315 (347)
T KOG0647|consen 289 SETHPQPITCCSFNR-NGSIFAYALGYD 315 (347)
T ss_pred cCcCCCccceeEecC-CCCEEEEEeecc
Confidence 788999999999977 77776655 444
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.8e-32 Score=231.39 Aligned_cols=243 Identities=19% Similarity=0.190 Sum_probs=211.3
Q ss_pred CCCCee-eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 5 EAKPRR-LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 5 ~~~~~~-l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+..+.. |.||.+.|.++++..- +.++++|+.|.++++||..++++..++.+|...|.++... ..++++|+.|.+|+
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVk 314 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVK 314 (537)
T ss_pred ceEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEE
Confidence 344555 9999999999999874 7899999999999999999999999999999999998875 45788889999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+|++++++ .+..+.+|..+|.++..+ +.++++|+.|+.|++||+.++++++.+. +|...|+++.+.+
T Consensus 315 VW~v~n~~---~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~------- 381 (537)
T KOG0274|consen 315 VWDVTNGA---CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDS------- 381 (537)
T ss_pred EEeccCcc---eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEecC-------
Confidence 99999764 445555588999999997 7899999999999999999999999999 9999999998865
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
. ..+++|+.|+.|++||+++.+
T Consensus 382 -----------------------------~-~~~~Sgs~D~~IkvWdl~~~~---------------------------- 403 (537)
T KOG0274|consen 382 -----------------------------E-NRLLSGSLDTTIKVWDLRTKR---------------------------- 403 (537)
T ss_pred -----------------------------c-ceEEeeeeccceEeecCCchh----------------------------
Confidence 3 889999999999999999731
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc-cccceE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVN 322 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 322 (349)
+++..+.+|..-+..+.+ .+++|++++.|++|++||..++ ..+....+ |...|.
T Consensus 404 -----------~c~~tl~~h~~~v~~l~~-----~~~~Lvs~~aD~~Ik~WD~~~~---------~~~~~~~~~~~~~v~ 458 (537)
T KOG0274|consen 404 -----------KCIHTLQGHTSLVSSLLL-----RDNFLVSSSADGTIKLWDAEEG---------ECLRTLEGRHVGGVS 458 (537)
T ss_pred -----------hhhhhhcCCccccccccc-----ccceeEeccccccEEEeecccC---------ceeeeeccCCcccEE
Confidence 577889999998877775 5789999999999999999998 56666666 678899
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+++. ...+++++.||.+++||++
T Consensus 459 ~l~~~---~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 459 ALALG---KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred EeecC---cceEEEEecCCeeEEEecc
Confidence 88875 2379999999999999985
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.7e-32 Score=208.79 Aligned_cols=244 Identities=17% Similarity=0.256 Sum_probs=202.5
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCC---CEEEEEeCCCeEEEEEccCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN---EDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~ 90 (349)
|.+.|.++... ++.+++|+.||.+++||.. |+....+.+|.++|.+++|.-.. ..+++++.|.++++|.++.+
T Consensus 104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred chhhhhhhccc---CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 88888888776 4689999999999999965 88889999999999988885433 35999999999999998865
Q ss_pred Ccc-cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-------------------------ceEeceeccc
Q 018858 91 ASW-RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-------------------------HCLYKSLRAG 144 (349)
Q Consensus 91 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------------------------~~~~~~~~~~ 144 (349)
... ..+....+|+..|.++...+++..+++|+.|.+|++|+... +.++..+. +
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-G 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-c
Confidence 432 23344568999999999999999999999999999999321 12334455 8
Q ss_pred cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC
Q 018858 145 HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 224 (349)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 224 (349)
|..+|.++.|.+ ...+.+++.|.+|+.||+.++
T Consensus 259 Ht~~Vs~V~w~d-------------------------------------~~v~yS~SwDHTIk~WDletg---------- 291 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-------------------------------------ATVIYSVSWDHTIKVWDLETG---------- 291 (423)
T ss_pred cccceeeEEEcC-------------------------------------CCceEeecccceEEEEEeecc----------
Confidence 888888888876 467889999999999999985
Q ss_pred CCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 304 (349)
....++.+ ...++++.++ |..++|++|+.|..+++||.+++...
T Consensus 292 ------------------------------~~~~~~~~-~ksl~~i~~~---~~~~Ll~~gssdr~irl~DPR~~~gs-- 335 (423)
T KOG0313|consen 292 ------------------------------GLKSTLTT-NKSLNCISYS---PLSKLLASGSSDRHIRLWDPRTGDGS-- 335 (423)
T ss_pred ------------------------------cceeeeec-CcceeEeecc---cccceeeecCCCCceeecCCCCCCCc--
Confidence 33334443 3568999999 88999999999999999999987432
Q ss_pred ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 305 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
...+.+.+|.+-|.++.|+|.+...|++++.|+++++||++
T Consensus 336 ----~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 336 ----VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred ----eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 45678889999999999999888899999999999999985
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.7e-33 Score=217.82 Aligned_cols=282 Identities=17% Similarity=0.170 Sum_probs=227.3
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
....+..|.+.+..+.|-++ ...|++|+.|..|++|+....+ .+.++.+..++|+.+.|.++++++++++.|+.+++
T Consensus 167 ~~~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhccccccceeEEccC-cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 45677889999999999997 7899999999999999987666 56788888899999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
|++... +...++.+|.+.|+++.|......+++|+.|.+|++||+....+.+++- ....+..|..++
T Consensus 246 Wnvd~~---r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~~-------- 312 (459)
T KOG0288|consen 246 WNVDSL---RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCSI-------- 312 (459)
T ss_pred eeccch---hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEecc--------
Confidence 999864 5667778899999999998877679999999999999999988877765 445566666644
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
..+++|..|++|++||+++......... ...+.++..+++|..+++.+
T Consensus 313 ------------------------------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~--gg~vtSl~ls~~g~~lLsss 360 (459)
T KOG0288|consen 313 ------------------------------SDVISGHFDKKVRFWDIRSADKTRSVPL--GGRVTSLDLSMDGLELLSSS 360 (459)
T ss_pred ------------------------------eeeeecccccceEEEeccCCceeeEeec--CcceeeEeeccCCeEEeeec
Confidence 5688999999999999998766554443 35899999999999998764
Q ss_pred eeeec---CceeeeeeeeecC----CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc-
Q 018858 245 ILDQS---GGKRLHLDYSVGG----HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN- 316 (349)
Q Consensus 245 ~~~~~---~~~~~~~~~~~~~----h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~- 316 (349)
..|.. .....+....+.+ .....+.+.|| |++.|+++||.||.|+||++.+++ +......
T Consensus 361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS---pd~~YvaAGS~dgsv~iW~v~tgK---------lE~~l~~s 428 (459)
T KOG0288|consen 361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS---PDGSYVAAGSADGSVYIWSVFTGK---------LEKVLSLS 428 (459)
T ss_pred CCCceeeeecccccEEEEeeccccccccccceeEEC---CCCceeeeccCCCcEEEEEccCce---------EEEEeccC
Confidence 33322 1122223333321 12347889999 999999999999999999999984 4433333
Q ss_pred ccc-ceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 317 LNK-KVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 317 ~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+.. .|++++|+| .|..|++++.++.+.+|.
T Consensus 429 ~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 429 TSNAAITSLSWNP-SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCcceEEEEEcC-CCchhhcccCCcceEecC
Confidence 222 699999998 788999999999999994
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-32 Score=225.62 Aligned_cols=252 Identities=19% Similarity=0.269 Sum_probs=222.5
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
.++++++++.. +.+.|..|.|. ++++++|...|.+.+||+.+...+.++++|.+.+.+++.+|+++.+++||.|.+|
T Consensus 402 ~t~kciRTi~~--~y~l~~~Fvpg-d~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktV 478 (888)
T KOG0306|consen 402 DTLKCIRTITC--GYILASKFVPG-DRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTV 478 (888)
T ss_pred cCcceeEEecc--ccEEEEEecCC-CceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEE
Confidence 35667777764 47889999997 7999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccC-----CCccccee-----eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEE
Q 018858 83 KSFDVHM-----PASWRPLE-----SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV 152 (349)
Q Consensus 83 ~iwd~~~-----~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 152 (349)
++||+.- +...+.+. ++. -.+.|.|+.++||+++|+++--|.+|++|-+.+-+..-++. +|.-+|.||
T Consensus 479 kfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~sm 556 (888)
T KOG0306|consen 479 KFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSM 556 (888)
T ss_pred EEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEE
Confidence 9999753 11111111 111 24679999999999999999999999999999999888888 999999999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
..+| +++++++|+.|..|++|-+.=+
T Consensus 557 DIS~------------------------------------DSklivTgSADKnVKiWGLdFG------------------ 582 (888)
T KOG0306|consen 557 DISP------------------------------------DSKLIVTGSADKNVKIWGLDFG------------------ 582 (888)
T ss_pred eccC------------------------------------CcCeEEeccCCCceEEeccccc------------------
Confidence 9999 8999999999999999998854
Q ss_pred eeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee
Q 018858 233 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
.+-+.+.+|...|.++.|. |+...+.++|.|+.|+-||-... ..+.
T Consensus 583 ----------------------DCHKS~fAHdDSvm~V~F~---P~~~~FFt~gKD~kvKqWDg~kF---------e~iq 628 (888)
T KOG0306|consen 583 ----------------------DCHKSFFAHDDSVMSVQFL---PKTHLFFTCGKDGKVKQWDGEKF---------EEIQ 628 (888)
T ss_pred ----------------------hhhhhhhcccCceeEEEEc---ccceeEEEecCcceEEeechhhh---------hhhe
Confidence 5667888999999999999 88899999999999999999887 6777
Q ss_pred eccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 313 KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+.+|...|++++.+| +|.+++++|.|.+|++|..
T Consensus 629 ~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 629 KLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred eeccchheeeeeEEcC-CCCeEEeccCCceeEeeec
Confidence 8899999999999988 8889999999999999974
No 69
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.4e-31 Score=194.42 Aligned_cols=282 Identities=16% Similarity=0.195 Sum_probs=225.6
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE--EeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL--VTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw 85 (349)
+.+++|...|.+++|+.+ |..|++|+.|+++.+|+++..+... ...+|...|-.++|+| +.+.+++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEccc-CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 567899999999999998 8999999999999999998775543 3467888999999987 66789999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|++.++....+.. ...=..+.|+|++.++++++.|..|.+.|.++.+.....+ ....+..++|+.
T Consensus 93 d~r~~k~~~~i~~----~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~--------- 157 (313)
T KOG1407|consen 93 DIRSGKCTARIET----KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNN--------- 157 (313)
T ss_pred EeccCcEEEEeec----cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecC---------
Confidence 9998765444433 2333458999999999999999999999999988877665 556677888886
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
++++|+.....|.|.|.....-+.+.....+. ...-++.|+|+|+++|+ |+
T Consensus 158 ---------------------------~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~-snCicI~f~p~GryfA~-Gs 208 (313)
T KOG1407|consen 158 ---------------------------SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP-SNCICIEFDPDGRYFAT-GS 208 (313)
T ss_pred ---------------------------CCCEEEEecCCceEEEEeccccccccccccCC-cceEEEEECCCCceEee-cc
Confidence 67888777788999999988766555554443 66678899999999995 33
Q ss_pred ee----ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 246 LD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 246 ~~----~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
.| .+....+-+.+.+..+.-+|..+.|+ .+|++||+||+|..|-|=+++++.. + .-..+.++-
T Consensus 209 ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS---~dg~~lASaSEDh~IDIA~vetGd~---------~-~eI~~~~~t 275 (313)
T KOG1407|consen 209 ADALVSLWDVDELICERCISRLDWPVRTLSFS---HDGRMLASASEDHFIDIAEVETGDR---------V-WEIPCEGPT 275 (313)
T ss_pred ccceeeccChhHhhhheeeccccCceEEEEec---cCcceeeccCccceEEeEecccCCe---------E-EEeeccCCc
Confidence 33 23444556777788888999999999 9999999999999999999999843 2 334678899
Q ss_pred EEEEeecCCCCcEEEeeCC---------CeEEEeeCC
Q 018858 322 NWLCTTPTESENLVVCDTS---------KVVKVYSIS 349 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~ 349 (349)
+.++|+| ...+|+-+++| |.+++|-++
T Consensus 276 ~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 276 FTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeEEecC-CCceeeEEecCCCCccccccceeEEecCC
Confidence 9999999 44577777544 678887553
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=209.84 Aligned_cols=256 Identities=15% Similarity=0.184 Sum_probs=213.9
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
.++.+..|+||+..|+.+.++|+ ...+++++.|-.|+||.............|.++|+.+..+|.|+||++++.|+...
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence 35678899999999999999998 78999999999999999988877788889999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
..|++++........- ...-.+++.+|+|||..|.+|..|+.|++||++++..+..|. +|.++|..++|+.
T Consensus 329 Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsE------- 399 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSE------- 399 (506)
T ss_pred EEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEecc-------
Confidence 9999987543332221 233468999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
+|-+|++++.|+.|++||+|+.
T Consensus 400 -----------------------------NGY~Lat~add~~V~lwDLRKl----------------------------- 421 (506)
T KOG0289|consen 400 -----------------------------NGYWLATAADDGSVKLWDLRKL----------------------------- 421 (506)
T ss_pred -----------------------------CceEEEEEecCCeEEEEEehhh-----------------------------
Confidence 8999999999999999999974
Q ss_pred eeeeecCceeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceE
Q 018858 244 EILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 322 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 322 (349)
+.++++.- ....+.++.|. +.|.+|+.++.|=.|++++-.+.. + ..+..+..|.+..+
T Consensus 422 -----------~n~kt~~l~~~~~v~s~~fD---~SGt~L~~~g~~l~Vy~~~k~~k~--W-----~~~~~~~~~sg~st 480 (506)
T KOG0289|consen 422 -----------KNFKTIQLDEKKEVNSLSFD---QSGTYLGIAGSDLQVYICKKKTKS--W-----TEIKELADHSGLST 480 (506)
T ss_pred -----------cccceeeccccccceeEEEc---CCCCeEEeecceeEEEEEeccccc--c-----eeeehhhhcccccc
Confidence 22222221 22368999999 899999999887777776644321 1 34556667888888
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.|.. .-++++++|.|..++++.+.
T Consensus 481 ~v~Fg~-~aq~l~s~smd~~l~~~a~~ 506 (506)
T KOG0289|consen 481 GVRFGE-HAQYLASTSMDAILRLYALT 506 (506)
T ss_pred eeeecc-cceEEeeccchhheEEeecC
Confidence 998866 66799999999999998763
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=212.20 Aligned_cols=277 Identities=17% Similarity=0.168 Sum_probs=225.9
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
..+.|.+++|+|....-+|+.+. -.+.+|+..+......+......|.++.|-.||+++++|...|.|+|||..+ .
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~---r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS---R 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc---H
Confidence 34789999999975555665554 3699999988887777777788999999999999999999999999999654 3
Q ss_pred cceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 94 RPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
..+..+.+|+.++..+.|+|++ ..|++|++|+.+++||+.+......+. +|.+.|.|.+|+|.
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~--------------- 164 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPA--------------- 164 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccC---------------
Confidence 4567788899999999999966 567788899999999999988766788 99999999999994
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCce
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK 252 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (349)
++.++++|+.||.|++||++... .....-..+.++..+.+-|.|..++++|.....+..
T Consensus 165 --------------------~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWD 223 (487)
T KOG0310|consen 165 --------------------NDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWD 223 (487)
T ss_pred --------------------CCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEE
Confidence 67799999999999999999863 333334456789999999999999987664433222
Q ss_pred ---eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecC
Q 018858 253 ---RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT 329 (349)
Q Consensus 253 ---~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 329 (349)
..+.+..+..|...|+|+.+. .++..|++|+-|+.|++||+.+. +. .......++|.+++.+|
T Consensus 224 l~~G~qll~~~~~H~KtVTcL~l~---s~~~rLlS~sLD~~VKVfd~t~~---------Kv-v~s~~~~~pvLsiavs~- 289 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNHNKTVTCLRLA---SDSTRLLSGSLDRHVKVFDTTNY---------KV-VHSWKYPGPVLSIAVSP- 289 (487)
T ss_pred ecCCceehhhhhcccceEEEEEee---cCCceEeecccccceEEEEccce---------EE-EEeeecccceeeEEecC-
Confidence 123344455599999999999 89999999999999999998875 33 34456788999999988
Q ss_pred CCCcEEEeeCCCeEEE
Q 018858 330 ESENLVVCDTSKVVKV 345 (349)
Q Consensus 330 ~~~~l~~~~~dg~i~i 345 (349)
+++.++.|..||.+.+
T Consensus 290 dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 290 DDQTVVIGMSNGLVSI 305 (487)
T ss_pred CCceEEEecccceeee
Confidence 7789999999998754
No 72
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=8.7e-31 Score=223.88 Aligned_cols=234 Identities=14% Similarity=0.071 Sum_probs=176.9
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--------EEEEeecCCCCeEEEEEecCCCEE-EEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--------VQLVTDVGNGPVTSLCFKSGNEDI-IYV 76 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 76 (349)
..+..+.+|.+.|.+++|+|+++++|++|+.||+|++||+.++. .+..+.+|...|.+++|+|++..+ +++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 35677899999999999999767899999999999999997542 345678899999999999988765 688
Q ss_pred eCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEE---
Q 018858 77 SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ--- 153 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--- 153 (349)
+.|+.|++||+++++... .+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+.++. +|.+.+....
T Consensus 145 S~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~ 219 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-IHDGGKNTKNIWI 219 (568)
T ss_pred eCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe-cccCCceeEEEEe
Confidence 999999999999765332 222 34679999999999999999999999999999999988888 8877654433
Q ss_pred --EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC----eEEEEEccCceeeeecCCCCCCc
Q 018858 154 --FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG----VVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
|++ ++.++++++.|+ .|+|||++...
T Consensus 220 ~~fs~------------------------------------d~~~IlTtG~d~~~~R~VkLWDlr~~~------------ 251 (568)
T PTZ00420 220 DGLGG------------------------------------DDNYILSTGFSKNNMREMKLWDLKNTT------------ 251 (568)
T ss_pred eeEcC------------------------------------CCCEEEEEEcCCCCccEEEEEECCCCC------------
Confidence 334 677888877664 79999999521
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeee--eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecc
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDY--SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 305 (349)
.++. .+..+.+.+...... +++.++++|+.|+.|++|++..+..
T Consensus 252 ---------------------------~pl~~~~ld~~~~~L~p~~D~---~tg~l~lsGkGD~tIr~~e~~~~~~---- 297 (568)
T PTZ00420 252 ---------------------------SALVTMSIDNASAPLIPHYDE---STGLIYLIGKGDGNCRYYQHSLGSI---- 297 (568)
T ss_pred ---------------------------CceEEEEecCCccceEEeeeC---CCCCEEEEEECCCeEEEEEccCCcE----
Confidence 1222 222333333333333 6788999999999999999987521
Q ss_pred cccceeeeccccccceEEEEeecCC
Q 018858 306 INNDLLIKNINLNKKVNWLCTTPTE 330 (349)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (349)
..+..+ .+..+..+++|.|..
T Consensus 298 ---~~l~~~-~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 298 ---RKVNEY-KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ---Eeeccc-ccCCCccceEEcccc
Confidence 122222 255677788888743
No 73
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=199.77 Aligned_cols=249 Identities=14% Similarity=0.152 Sum_probs=200.7
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
+..+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++... .+..-.+.+|.++|..+.|.++++.+++++.|++|+.|
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4556789999999999999999999999999999997632 23445566899999999999999999999999999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
|++++++.+.++ +|..-+..+.-..- ...++.+++.||++++||
T Consensus 118 D~~tG~~~rk~k-~h~~~vNs~~p~rr-----------------------------------g~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 118 DAETGKRIRKHK-GHTSFVNSLDPSRR-----------------------------------GPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred ecccceeeehhc-cccceeeecCcccc-----------------------------------CCeEEEecCCCceEEEEe
Confidence 999999999999 99988888873221 345677889999999999
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEEEeeee---eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL---DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
+++...+.++.. +.++.++.|..++..+.+.+.. ..+........+.+.||..+|+.+..+ ++|.++.+-+.
T Consensus 162 ~R~k~~~~t~~~--kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls---~~gs~llsnsM 236 (338)
T KOG0265|consen 162 IRKKEAIKTFEN--KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS---RYGSFLLSNSM 236 (338)
T ss_pred ecccchhhcccc--ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEec---cCCCccccccc
Confidence 997665554432 3567889999998888854433 334444557778999999999999999 89999999999
Q ss_pred CCeEEEEecCCCcceecccccceeeecccc--ccc--eEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINL--NKK--VNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~--v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|.++++||++..-..+ +.+..+.+| .-. ....+|+| ++..+.+++.|..+++||.
T Consensus 237 d~tvrvwd~rp~~p~~-----R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAPSQ-----RCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWDT 295 (338)
T ss_pred cceEEEEEecccCCCC-----ceEEEeecchhhhhhhcceeeccC-CCCccccccccceEEEeec
Confidence 9999999998653221 445555553 333 34567877 7888999999999999984
No 74
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-31 Score=219.96 Aligned_cols=243 Identities=19% Similarity=0.233 Sum_probs=208.0
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
-.+.||...|.+++++.+ ...+++|+ .+.|++|+..+.++++++... .+.+..|-|.++++++|...|.+.+||+.
T Consensus 367 i~~~GHR~dVRsl~vS~d-~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSD-SILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeeccchhheeEEEeecC-ceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEee
Confidence 345699999999999987 56666655 578999999999999998754 78899999999999999999999999998
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-----ceEeceec------cccccceeEEEEccC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-----HCLYKSLR------AGHSSICSSVQFIPW 157 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~------~~~~~~v~~~~~~~~ 157 (349)
+. ..+...++|.+.++.++.+||+..+++|+.|.+|++||..- +...+.++ ......|.|++++|
T Consensus 443 S~---~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp- 518 (888)
T KOG0306|consen 443 SA---SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP- 518 (888)
T ss_pred hh---hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-
Confidence 65 44455668999999999999999999999999999999751 11111111 01345677777777
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccc
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 237 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (349)
++++|+++--|.++++|-+.+-
T Consensus 519 -----------------------------------dgk~LaVsLLdnTVkVyflDtl----------------------- 540 (888)
T KOG0306|consen 519 -----------------------------------DGKLLAVSLLDNTVKVYFLDTL----------------------- 540 (888)
T ss_pred -----------------------------------CCcEEEEEeccCeEEEEEecce-----------------------
Confidence 8999999999999999999973
Q ss_pred cEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 238 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
+..-.+.||.-+|.|+.++ ||++.++|||.|.+|+||-++-+ .+-..+.+|
T Consensus 541 -----------------KFflsLYGHkLPV~smDIS---~DSklivTgSADKnVKiWGLdFG---------DCHKS~fAH 591 (888)
T KOG0306|consen 541 -----------------KFFLSLYGHKLPVLSMDIS---PDSKLIVTGSADKNVKIWGLDFG---------DCHKSFFAH 591 (888)
T ss_pred -----------------eeeeeecccccceeEEecc---CCcCeEEeccCCCceEEeccccc---------hhhhhhhcc
Confidence 6667889999999999999 99999999999999999999998 666788999
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.+.|.++.|.| +...+.+||.|+.|+-||
T Consensus 592 dDSvm~V~F~P-~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 592 DDSVMSVQFLP-KTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred cCceeEEEEcc-cceeEEEecCcceEEeec
Confidence 99999999999 777899999999999997
No 75
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-32 Score=204.10 Aligned_cols=254 Identities=17% Similarity=0.240 Sum_probs=216.6
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
..+++.|.||++.|+.++.... ..++.+++.|.+.+||.++++.++..+.+|.+.|.++.|++.+.++++++.|++-+|
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADST-QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred EeehhhhcccccceeeehhhcC-CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 4577889999999999998876 679999999999999999999999999999999999999999999999999999999
Q ss_pred EEc------cCC-------------------------------CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcE
Q 018858 85 FDV------HMP-------------------------------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127 (349)
Q Consensus 85 wd~------~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (349)
|.. ..+ ....++..+.+|...|.+..|-..++.+++++.|.+-
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 972 110 0112344566788888888998889999999999999
Q ss_pred EEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
.+||+++++++..+. +|....+.++-+| ..+++++.+.|-+.+
T Consensus 297 nlwDVEtge~v~~Lt-GHd~ELtHcstHp------------------------------------tQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 297 NLWDVETGEVVNILT-GHDSELTHCSTHP------------------------------------TQRLVVTSSRDTTFR 339 (481)
T ss_pred eeeeeccCceecccc-CcchhccccccCC------------------------------------cceEEEEeccCceeE
Confidence 999999999999999 9999999999999 789999999999999
Q ss_pred EEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 208 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
+||++.. ...+..+++|...|++..|. .+..+++|+.
T Consensus 340 LWDFRea---------------------------------------I~sV~VFQGHtdtVTS~vF~----~dd~vVSgSD 376 (481)
T KOG0300|consen 340 LWDFREA---------------------------------------IQSVAVFQGHTDTVTSVVFN----TDDRVVSGSD 376 (481)
T ss_pred eccchhh---------------------------------------cceeeeecccccceeEEEEe----cCCceeecCC
Confidence 9999952 25567899999999999998 4568899999
Q ss_pred CCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|.+|+|||+++.. ..+ .......+++.++.+- .+..++.--++..|++|||+
T Consensus 377 DrTvKvWdLrNMR--------spl-ATIRtdS~~NRvavs~-g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 377 DRTVKVWDLRNMR--------SPL-ATIRTDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred CceEEEeeecccc--------Ccc-eeeecCCccceeEeec-CCceEEeccCCceEEEEecC
Confidence 9999999999874 233 2334567888888865 55567777788999999984
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-31 Score=209.27 Aligned_cols=255 Identities=19% Similarity=0.236 Sum_probs=211.6
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE----EE---e-----------ecCCCCeEEEEEecC
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ----LV---T-----------DVGNGPVTSLCFKSG 69 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~----~~---~-----------~~~~~~v~~~~~~~~ 69 (349)
.+.+..|.-+|.|++++|+ .++.++++.+|+|.-|++.+++.. .. + +.|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 5777889999999999998 799999999999999999877632 11 0 267788999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccce
Q 018858 70 NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC 149 (349)
Q Consensus 70 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 149 (349)
|++|++|+.|..|.||+.++. ..++.+.+|.+.|.+++|-.....+++++.|..|++|++.....+.++. +|.+.|
T Consensus 214 gkylatgg~d~~v~Iw~~~t~---ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v 289 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTL---EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGV 289 (479)
T ss_pred CcEEEecCCCceEEEecCccc---chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCccce
Confidence 999999999999999999975 4556678899999999999888899999999999999999998899998 999999
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
.++.... .++.+.+|+.|+++++|++..
T Consensus 290 ~~IdaL~------------------------------------reR~vtVGgrDrT~rlwKi~e---------------- 317 (479)
T KOG0299|consen 290 LGIDALS------------------------------------RERCVTVGGRDRTVRLWKIPE---------------- 317 (479)
T ss_pred eeechhc------------------------------------ccceEEeccccceeEEEeccc----------------
Confidence 9998776 678888888999999999975
Q ss_pred eeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccc
Q 018858 230 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 309 (349)
.....+.+|.+.+-|++|- +...+++|+.||.|.+|++...+.+.......
T Consensus 318 -------------------------esqlifrg~~~sidcv~~I----n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 318 -------------------------ESQLIFRGGEGSIDCVAFI----NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred -------------------------cceeeeeCCCCCeeeEEEe----cccceeeccCCceEEEeeecccCceeEeeccc
Confidence 3344677888899999997 67899999999999999999876443321111
Q ss_pred eee---eccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 310 LLI---KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 310 ~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+. ....++..|++++..| ..+++++|+.+|.|++|.++
T Consensus 369 gv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred cccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEec
Confidence 110 1112334789999988 77799999999999999863
No 77
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.6e-32 Score=215.61 Aligned_cols=239 Identities=15% Similarity=0.183 Sum_probs=200.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCC-CEEEEEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i 82 (349)
.+++++++.+|..+|..++|+++ +..+++++.|+.|++||.++|+++..+. ....+.++.|.|++ +.+++|+.|+.|
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~-g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNC-GTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred Ccceehhhhcchhhhhhhhcccc-CCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcE
Confidence 46889999999999999999998 8999999999999999999999988887 45678999999988 778899999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
+-||+++++ .++.+..|-+.|..+.|-++++++++.++|++++||+.+.+..++.....+.....++..+|++.|..
T Consensus 325 ~~wDiRs~k---vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 325 RQWDIRSGK---VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred EEEeccchH---HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh
Confidence 999999874 55666667889999999999999999999999999999988776655423445677899999999884
Q ss_pred CC--CCC------CCCc---------cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCC
Q 018858 163 LP--ENN------GNAG---------QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 225 (349)
Q Consensus 163 ~~--~~~------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 225 (349)
.. ++. .+.. .....+....+.|+| +|.+|++|+.||.+.+||.++.
T Consensus 402 aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp------DG~~l~SGdsdG~v~~wdwkt~----------- 464 (503)
T KOG0282|consen 402 AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP------DGRTLCSGDSDGKVNFWDWKTT----------- 464 (503)
T ss_pred hhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC------CCCeEEeecCCccEEEeechhh-----------
Confidence 32 222 0000 011235567788888 9999999999999999999974
Q ss_pred CccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 226 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
+++..+++|...+..+.|+| .....+||++.||.|++||
T Consensus 465 -----------------------------kl~~~lkah~~~ci~v~wHP--~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 -----------------------------KLVSKLKAHDQPCIGVDWHP--VEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -----------------------------hhhhccccCCcceEEEEecC--CCcceeEecccCceeEecC
Confidence 67778899999999999997 4556899999999999996
No 78
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-30 Score=196.00 Aligned_cols=265 Identities=14% Similarity=0.169 Sum_probs=208.1
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
-++.|..+.|+|. ++.|+.++.||.+++||.....+...++ |..++.+++|.+ ...+++|+-||.|+.+|+.+++.
T Consensus 12 P~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~- 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE- 87 (323)
T ss_pred ChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-
Confidence 3678999999988 6777778899999999999887666666 899999999987 55699999999999999997643
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQC 173 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
..+..|..++.|+..++....+++|+.|+.|++||.+.......+. ....|.++..
T Consensus 88 ---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v------------------- 143 (323)
T KOG1036|consen 88 ---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV------------------- 143 (323)
T ss_pred ---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEec-------------------
Confidence 3344578999999999988999999999999999999866666655 4457888876
Q ss_pred cCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee-ecCCCCCCccceeeeeccccEEEEeeeeeecCce
Q 018858 174 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK 252 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (349)
.++.|++|+.+..+.+||+++..... ......+-+++++++-|++.-.++ ++.++.+..
T Consensus 144 -------------------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~-sSieGRVav 203 (323)
T KOG1036|consen 144 -------------------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV-SSIEGRVAV 203 (323)
T ss_pred -------------------cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEE-EeecceEEE
Confidence 46789999999999999999865544 334455678899999996655552 333332111
Q ss_pred --------eeeeeeeecCCC---------cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 253 --------RLHLDYSVGGHT---------AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 253 --------~~~~~~~~~~h~---------~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
.......++.|. .+|++|+|+ |-...|+||+.||.|.+||+.+. +.+..+.
T Consensus 204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh---p~~~tfaTgGsDG~V~~Wd~~~r---------Krl~q~~ 271 (323)
T KOG1036|consen 204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH---PIHGTFATGGSDGIVNIWDLFNR---------KRLKQLA 271 (323)
T ss_pred EccCCchHHhhhceeEEeeecccCCceEEEEeceeEec---cccceEEecCCCceEEEccCcch---------hhhhhcc
Confidence 112233455553 389999999 67789999999999999999997 5666666
Q ss_pred ccccceEEEEeecCCCCcEEEeeC
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
.....|.+++|+. +|..||+++.
T Consensus 272 ~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 272 KYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred CCCCceEEEEecc-CCCeEEEEec
Confidence 7778899999976 8889998863
No 79
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-31 Score=193.70 Aligned_cols=267 Identities=16% Similarity=0.162 Sum_probs=207.3
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC---cEEEEeecCCCCeEEEEEec--CCCEEEEEeCCCeEEEE
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK---DVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw 85 (349)
-..|.+.|..+...-. |+.|+|++.|++|+|+..+.. +++.++.+|.+||..++|.. .|..||+++.||.|.||
T Consensus 7 dt~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3478999998888777 899999999999999998754 45789999999999999965 79999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCc--eE-eceeccccccceeEEEEccCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQH--CL-YKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~--~~-~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
.-+.+ .......+..|...|++++|.|. |-.|++++.||.|.|.+.+.. -. .+... .|.-.|++++|.|-..
T Consensus 86 ke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~-aH~~GvnsVswapa~~- 162 (299)
T KOG1332|consen 86 KEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF-AHEIGVNSVSWAPASA- 162 (299)
T ss_pred ecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh-ccccccceeeecCcCC-
Confidence 98876 55666677789999999999885 478899999999999998843 22 22334 7889999999999300
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
.+..... .+ ...-+.|++|+.|..|+||+..++
T Consensus 163 ---------~g~~~~~--------~~----~~~~krlvSgGcDn~VkiW~~~~~-------------------------- 195 (299)
T KOG1332|consen 163 ---------PGSLVDQ--------GP----AAKVKRLVSGGCDNLVKIWKFDSD-------------------------- 195 (299)
T ss_pred ---------Ccccccc--------Cc----ccccceeeccCCccceeeeecCCc--------------------------
Confidence 0000000 00 002367999999999999999863
Q ss_pred EEeeeeeecCceeeeeeeeecCCCcceEEEEEeeec-CCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc
Q 018858 241 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG-ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK 319 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 319 (349)
.......+.+|...|+.++|.|.. -...+|+++++||++.||-....... .....+.....
T Consensus 196 ------------~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~------wk~tll~~f~~ 257 (299)
T KOG1332|consen 196 ------------SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP------WKKTLLEEFPD 257 (299)
T ss_pred ------------chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc------ccccccccCCc
Confidence 224445689999999999999511 11358999999999999988743221 22334445778
Q ss_pred ceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 320 KVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 320 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.+..+.|+. .|++|+.++.|+.|.+|.
T Consensus 258 ~~w~vSWS~-sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 258 VVWRVSWSL-SGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ceEEEEEec-cccEEEEecCCcEEEEEE
Confidence 899999987 888999999999999996
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=219.94 Aligned_cols=246 Identities=15% Similarity=0.188 Sum_probs=204.7
Q ss_pred Cceeee---EEEEecCCCceEEEeCCCCcEEEEECCCCc------EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 14 HKATAT---CCIASRDRPGFVASSGEDGCICWFDLRSKD------VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 14 h~~~i~---~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
|...|. .+..+..++++|+|||.||.|++|+..... .+..++.|..-|..++...+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444455 555566667899999999999999986422 36778889999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEE-ccCCCEEEEEcCCCcEEEEEcCCce--Eeceec--------cccccceeEEE
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVC-NPKSSFLACADDGGDVKIIDIRQHC--LYKSLR--------AGHSSICSSVQ 153 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~--------~~~~~~v~~~~ 153 (349)
|+...+. ...+.++..|.+.|.|++. .++..++|+|+-|+.|.+||+.++. .+.++. .++..+|++++
T Consensus 100 W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 100 WNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred eecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9998653 3556677789999999999 7788899999999999999999762 222221 14455666666
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeee
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
.++ .+..++.|+..+.|++||.++.
T Consensus 179 ~N~------------------------------------t~t~ivsGgtek~lr~wDprt~------------------- 203 (735)
T KOG0308|consen 179 MNQ------------------------------------TGTIIVSGGTEKDLRLWDPRTC------------------- 203 (735)
T ss_pred cCC------------------------------------cceEEEecCcccceEEeccccc-------------------
Confidence 666 7889999999999999999985
Q ss_pred eccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 234 SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
..+..+++|...|..+..+ +||..++++|.||+|++||+... +.+..
T Consensus 204 ---------------------~kimkLrGHTdNVr~ll~~---dDGt~~ls~sSDgtIrlWdLgqQ---------rCl~T 250 (735)
T KOG0308|consen 204 ---------------------KKIMKLRGHTDNVRVLLVN---DDGTRLLSASSDGTIRLWDLGQQ---------RCLAT 250 (735)
T ss_pred ---------------------cceeeeeccccceEEEEEc---CCCCeEeecCCCceEEeeecccc---------ceeee
Confidence 4556778999999999999 99999999999999999999987 78888
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+..|...|+++..+| +-..+++|+.||.|+.=||+
T Consensus 251 ~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 251 YIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred EEeccCceEEEeeCC-CcceEEecCCCCcEEecccC
Confidence 999999999999987 66789999999999876653
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-32 Score=199.60 Aligned_cols=242 Identities=17% Similarity=0.197 Sum_probs=206.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
++.-+.+|.||++.|+....+.+ ....++++.|-+-++||.-++..+.++. |..-|.+++|+.+.++|++|+.+..++
T Consensus 48 tgdwigtfeghkgavw~~~l~~n-a~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllr 125 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKN-ATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLR 125 (334)
T ss_pred CCCcEEeeeccCcceeeeecCch-hhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhh
Confidence 56778899999999999988876 7788899999999999999999998888 888999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|||++..+ .+...+.+|.+.|..+.|....+.|++++.|+.|++||.++++.++++. .+.+|+++.++++|.++..
T Consensus 126 vfdln~p~--App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 126 VFDLNRPK--APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred hhhccCCC--CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCEEEE
Confidence 99998643 4556678899999999999989999999999999999999999999987 7788999999999887743
Q ss_pred CCCC----------CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeee
Q 018858 164 PENN----------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 164 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
.... ........+..+.+..+.| +...+++|+.|..++.||..++.
T Consensus 202 a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P------~k~~fVaGged~~~~kfDy~Tge------------------ 257 (334)
T KOG0278|consen 202 AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP------KKEFFVAGGEDFKVYKFDYNTGE------------------ 257 (334)
T ss_pred ecCceeEEeccccccceeeccCccccccccccC------CCceEEecCcceEEEEEeccCCc------------------
Confidence 3222 1222223345677777777 77899999999999999999852
Q ss_pred eccccEEEEeeeeeecCceeeeeeee-ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 234 SKVNIRDAEMEILDQSGGKRLHLDYS-VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.+.. .++|.++|.|+.|+ |+|...++||+||+|++|.+..++
T Consensus 258 ----------------------Ei~~~nkgh~gpVhcVrFS---PdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 258 ----------------------EIGSYNKGHFGPVHCVRFS---PDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ----------------------eeeecccCCCCceEEEEEC---CCCceeeccCCCceEEEEEecCCC
Confidence 2223 47899999999999 999999999999999999987653
No 82
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=1.9e-29 Score=205.56 Aligned_cols=245 Identities=23% Similarity=0.325 Sum_probs=204.5
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
++....+..|...+.++.|+|+ ++++++++.+|.|++||+.+++.+..+..|...+.++.|+++++++++++.++.|.+
T Consensus 41 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 119 (289)
T cd00200 41 GELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119 (289)
T ss_pred CCcEEEEecCCcceeEEEECCC-CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEE
Confidence 3456778899999999999998 789999999999999999988888888889999999999999888888888999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
||+++++ ....+..|...+.+++|+|++.++++++.++.|++||+++++.+..+. .+...+.++.|+|
T Consensus 120 ~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~-------- 187 (289)
T cd00200 120 WDVETGK---CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSP-------- 187 (289)
T ss_pred EECCCcE---EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEEECC--------
Confidence 9998653 334444677889999999999999998889999999999888888888 7888999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
+++.+++++.++.|++||++..+...... .....+..+.|++++.++++..
T Consensus 188 ----------------------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 188 ----------------------------DGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred ----------------------------CcCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence 78888999999999999999766555443 2344788999999977777533
Q ss_pred eeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 245 ILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 245 ~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
.++. ..........+..|...|.++.|+ +++++|++++.|+.|++|+
T Consensus 239 -~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 239 -EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS---PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -CCCcEEEEEcCCceeEEEccccCCcEEEEEEC---CCCCEEEEecCCCeEEecC
Confidence 2222 122235556677888899999999 8999999999999999996
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=3.6e-30 Score=219.39 Aligned_cols=234 Identities=21% Similarity=0.292 Sum_probs=205.3
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEE-eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV-TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
|...+.|..|. ..++++++.+++|++||..++..+.. +.+|.+.|.++++..-+..+++|+.|.++++||..++++
T Consensus 207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 56678888888 35899999999999999999998877 999999999999988788999999999999999998754
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
...+.+|...+.++... ...+++|+.|.+|++|++.++..+..+. +|..+|.++..+
T Consensus 284 ---~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~----------------- 340 (537)
T KOG0274|consen 284 ---THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD----------------- 340 (537)
T ss_pred ---EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec-----------------
Confidence 45566788999988875 4578889999999999999999999999 899999999984
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCce
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK 252 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (349)
+.++++|+.||+|++||+...
T Consensus 341 ---------------------~~~lvsgs~d~~v~VW~~~~~-------------------------------------- 361 (537)
T KOG0274|consen 341 ---------------------EPLLVSGSYDGTVKVWDPRTG-------------------------------------- 361 (537)
T ss_pred ---------------------CCEEEEEecCceEEEEEhhhc--------------------------------------
Confidence 579999999999999999975
Q ss_pred eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC
Q 018858 253 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 332 (349)
Q Consensus 253 ~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 332 (349)
++++.+.+|...|+++.+. .. ..+++|+.|+.|++||+.+.. +.+..+.+|..-+..+.+ .++
T Consensus 362 --~cl~sl~gH~~~V~sl~~~---~~-~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~~~v~~l~~---~~~ 424 (537)
T KOG0274|consen 362 --KCLKSLSGHTGRVYSLIVD---SE-NRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHTSLVSSLLL---RDN 424 (537)
T ss_pred --eeeeeecCCcceEEEEEec---Cc-ceEEeeeeccceEeecCCchh--------hhhhhhcCCccccccccc---ccc
Confidence 7889999999999999876 33 899999999999999999963 366678889888888776 445
Q ss_pred cEEEeeCCCeEEEeeCC
Q 018858 333 NLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 333 ~l~~~~~dg~i~iw~~~ 349 (349)
+|++++.|++|++||..
T Consensus 425 ~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAE 441 (537)
T ss_pred eeEeccccccEEEeecc
Confidence 89999999999999863
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.8e-28 Score=176.85 Aligned_cols=286 Identities=12% Similarity=0.117 Sum_probs=220.5
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCC------C-----c----EEEEeecCCCCeEEEEEecCCCEEEEEeC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRS------K-----D----VQLVTDVGNGPVTSLCFKSGNEDIIYVSS 78 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~------~-----~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 78 (349)
.+..|.+++|+|. |.+.+.|+...+++|-.+.. + + ..+.-+.|.+.|.|.+|+|+|++|++|+.
T Consensus 31 dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 31 DSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred chhheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 4567999999998 88999999999998875432 1 1 12334568999999999999999999999
Q ss_pred CCeEEEEEccCCC--cccceeeccCcccceEEEEEccC----CCEEEEEc-CCCcEEEEEcCCceEeceeccccccceeE
Q 018858 79 GKEVKSFDVHMPA--SWRPLESYNYNKEEINQIVCNPK----SSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSS 151 (349)
Q Consensus 79 dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 151 (349)
|++|++..+.... ....-..+..|.+.|..++|-.+ +..|++++ .|..|++-|...++..+.+. +|.+.|.+
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghila 188 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILA 188 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEE
Confidence 9999998765422 12222345668899999999653 35666655 46678888988999999999 99998887
Q ss_pred EE-EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC------C
Q 018858 152 VQ-FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST------T 224 (349)
Q Consensus 152 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~ 224 (349)
+- | ++-++++|+.|.+|++||++-+.++...... .
T Consensus 189 lysw--------------------------------------n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 189 LYSW--------------------------------------NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE 230 (350)
T ss_pred EEEe--------------------------------------cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence 64 3 5789999999999999999987776654322 2
Q ss_pred CCccceeeeeccccEEEEeeeee----ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.+.+..++..|.|+.+++ |..| ....+....+..+..|...|.++.|+ |...|+++++.|..|++=|++..-
T Consensus 231 ssavaav~vdpsgrll~s-g~~dssc~lydirg~r~iq~f~phsadir~vrfs---p~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLAS-GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS---PGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred cceeEEEEECCCcceeee-ccCCCceEEEEeeCCceeeeeCCCccceeEEEeC---CCceEEEEecccceEEEeecccch
Confidence 356788999999999995 3222 22333456778888999999999999 888999999999999999998642
Q ss_pred ceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 301 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+ -.+.....|++.+..+.|+|.+ -.+++.+.|.++.+|.++
T Consensus 307 a~e-----l~~~vv~ehkdk~i~~rwh~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 307 AHE-----LPIMVVAEHKDKAIQCRWHPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred hhc-----CceEEEEeccCceEEEEecCcc-ceeeeccCcceEEEeccC
Confidence 111 2233455799999999999954 468888999999999864
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=6.5e-30 Score=200.35 Aligned_cols=240 Identities=20% Similarity=0.299 Sum_probs=205.5
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
..|.++...|. ...+.||+.|..+.++|....+.+..+++|...|+.+.++|+...+++++.|..|+||.......
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--- 295 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--- 295 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC---
Confidence 46888888887 68999999999999999999999999999999999999999999999999999999999876432
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc-ccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
......|+.+|+.+..+|.|.||++++.||...+.|++++..+..... ...-.+++.+|+|
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp------------------ 357 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP------------------ 357 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC------------------
Confidence 233456889999999999999999999999999999999988877661 1234588999999
Q ss_pred CCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceee
Q 018858 175 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
||.+|.+|..||.|++||+.++
T Consensus 358 ------------------DgLifgtgt~d~~vkiwdlks~---------------------------------------- 379 (506)
T KOG0289|consen 358 ------------------DGLIFGTGTPDGVVKIWDLKSQ---------------------------------------- 379 (506)
T ss_pred ------------------CceEEeccCCCceEEEEEcCCc----------------------------------------
Confidence 8999999999999999999974
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcE
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 334 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 334 (349)
.....+.+|.++|..|.|+ .+|.||+++++|+.|++||++..+. ..........++.++.|.. .|.+|
T Consensus 380 ~~~a~Fpght~~vk~i~Fs---ENGY~Lat~add~~V~lwDLRKl~n--------~kt~~l~~~~~v~s~~fD~-SGt~L 447 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFS---ENGYWLATAADDGSVKLWDLRKLKN--------FKTIQLDEKKEVNSLSFDQ-SGTYL 447 (506)
T ss_pred cccccCCCCCCceeEEEec---cCceEEEEEecCCeEEEEEehhhcc--------cceeeccccccceeEEEcC-CCCeE
Confidence 4556788999999999999 9999999999999999999998642 1112222334799999977 88899
Q ss_pred EEeeCCCeEEEee
Q 018858 335 VVCDTSKVVKVYS 347 (349)
Q Consensus 335 ~~~~~dg~i~iw~ 347 (349)
+.++.|=.|++++
T Consensus 448 ~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 448 GIAGSDLQVYICK 460 (506)
T ss_pred EeecceeEEEEEe
Confidence 9999888887765
No 86
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.1e-29 Score=230.74 Aligned_cols=264 Identities=18% Similarity=0.187 Sum_probs=203.5
Q ss_pred CCcEEEEECCCCcEEEE-----eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC----cc-cceeeccCcccce
Q 018858 37 DGCICWFDLRSKDVQLV-----TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA----SW-RPLESYNYNKEEI 106 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~-~~~~~~~~~~~~v 106 (349)
+|.+++|+....+.... +..|...|.+++|+|+++++++|+.|+.|+||++.... .. .+...+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 67788898876554433 33488999999999999999999999999999986421 10 1112222 24678
Q ss_pred EEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 107 NQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 107 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
.+++|++. +.+|++++.||.|++||+.+++.+..+. +|...|++++|+|.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~---------------------------- 586 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSA---------------------------- 586 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCC----------------------------
Confidence 99999874 6899999999999999999999989998 89999999999973
Q ss_pred cccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee-ccccEEEEeeeeeecCce----ee-eeeee
Q 018858 186 DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS-KVNIRDAEMEILDQSGGK----RL-HLDYS 259 (349)
Q Consensus 186 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~-~~~~~ 259 (349)
++.+|++|+.||.|++||++++........ ...+.++.|+ +++..+++ +..++.+.. .. .....
T Consensus 587 -------~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~~~v~~v~~~~~~g~~lat-gs~dg~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 587 -------DPTLLASGSDDGSVKLWSINQGVSIGTIKT--KANICCVQFPSESGRSLAF-GSADHKVYYYDLRNPKLPLCT 656 (793)
T ss_pred -------CCCEEEEEcCCCEEEEEECCCCcEEEEEec--CCCeEEEEEeCCCCCEEEE-EeCCCeEEEEECCCCCccceE
Confidence 678999999999999999998766655443 2457788885 46777774 444433211 11 23456
Q ss_pred ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeC
Q 018858 260 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 260 ~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
+.+|...|.++.|. ++.+|++++.|+.|++||+...... .....+..+.+|...++.++|++ ++.+|++|+.
T Consensus 657 ~~~h~~~V~~v~f~----~~~~lvs~s~D~~ikiWd~~~~~~~---~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~ 728 (793)
T PLN00181 657 MIGHSKTVSYVRFV----DSSTLVSSSTDNTLKLWDLSMSISG---INETPLHSFMGHTNVKNFVGLSV-SDGYIATGSE 728 (793)
T ss_pred ecCCCCCEEEEEEe----CCCEEEEEECCCEEEEEeCCCCccc---cCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeC
Confidence 67899999999996 5789999999999999999753210 00135567788999999999988 6789999999
Q ss_pred CCeEEEeeC
Q 018858 340 SKVVKVYSI 348 (349)
Q Consensus 340 dg~i~iw~~ 348 (349)
|+.|++|+.
T Consensus 729 D~~v~iw~~ 737 (793)
T PLN00181 729 TNEVFVYHK 737 (793)
T ss_pred CCEEEEEEC
Confidence 999999985
No 87
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.3e-30 Score=202.12 Aligned_cols=240 Identities=19% Similarity=0.196 Sum_probs=198.7
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC-----
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM----- 89 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----- 89 (349)
.++|.|++-+|. |.+|+.|+..|.|++|.+.+|.++..+.+|-..|+++.|+.|+.+|++|+.||.|.+|.+-.
T Consensus 81 Pg~v~al~s~n~-G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSNL-GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred ccceeeeecCCC-ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 578999999998 89999998999999999999999999999999999999999999999999999999998743
Q ss_pred -CCcccceeeccCcccceEEEEEccCC--CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 90 -PASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 90 -~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
....+++..+..|.-+|+++...+.+ .++++++.|.++++||+..+..+.++. .+..+.+++.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDp---------- 227 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDP---------- 227 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcc----------
Confidence 12456778888999999999987753 789999999999999999999988887 778899999999
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.++.+.+|+.+|.|.+.++.+..... ..+..-.+++
T Consensus 228 --------------------------ae~~~yiGt~~G~I~~~~~~~~~~~~-------~~v~~k~~~~----------- 263 (476)
T KOG0646|consen 228 --------------------------AERVVYIGTEEGKIFQNLLFKLSGQS-------AGVNQKGRHE----------- 263 (476)
T ss_pred --------------------------cccEEEecCCcceEEeeehhcCCccc-------cccccccccc-----------
Confidence 78999999999999999887531000 0000001111
Q ss_pred eecCceeeeeeeeecCCCc--ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEE
Q 018858 247 DQSGGKRLHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 324 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~--~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 324 (349)
....+..+.+|.+ .|+|++++ -||..|++|+.||.|.|||+.+. .+++......++|+.+
T Consensus 264 ------~~t~~~~~~Gh~~~~~ITcLais---~DgtlLlSGd~dg~VcvWdi~S~---------Q~iRtl~~~kgpVtnL 325 (476)
T KOG0646|consen 264 ------ENTQINVLVGHENESAITCLAIS---TDGTLLLSGDEDGKVCVWDIYSK---------QCIRTLQTSKGPVTNL 325 (476)
T ss_pred ------ccceeeeeccccCCcceeEEEEe---cCccEEEeeCCCCCEEEEecchH---------HHHHHHhhhcccccee
Confidence 1244566788887 99999999 89999999999999999999997 5555555577888888
Q ss_pred EeecC
Q 018858 325 CTTPT 329 (349)
Q Consensus 325 ~~~~~ 329 (349)
.+.|-
T Consensus 326 ~i~~~ 330 (476)
T KOG0646|consen 326 QINPL 330 (476)
T ss_pred Eeecc
Confidence 88663
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.2e-29 Score=208.21 Aligned_cols=236 Identities=14% Similarity=0.221 Sum_probs=202.8
Q ss_pred eeeeCCceeeeE-EEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 9 RRLRGHKATATC-CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 9 ~~l~~h~~~i~~-~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
+.+.+|.+-|.+ +++.+.++-.+++|+.|.+|.+|......++.++.+|...|.++....++. +++||.|.++++|..
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence 457788888888 888865466799999999999999999999999999999999999887777 999999999999987
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
. +....+++|...|++++.-|++ .+++|+.|+.|++|.- ++.+++|. +|.+-|+.+++.+
T Consensus 130 ~-----~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~----------- 189 (745)
T KOG0301|consen 130 G-----ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLD----------- 189 (745)
T ss_pred h-----hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEec-----------
Confidence 6 3344588899999999999877 8999999999999974 78899999 9999999999987
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
+..|++++.||.|++|++..
T Consensus 190 --------------------------~~~flScsNDg~Ir~w~~~g---------------------------------- 209 (745)
T KOG0301|consen 190 --------------------------DSHFLSCSNDGSIRLWDLDG---------------------------------- 209 (745)
T ss_pred --------------------------CCCeEeecCCceEEEEeccC----------------------------------
Confidence 45688999999999999965
Q ss_pred ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee
Q 018858 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
+.+..+.+|...|+++... .++..++++++|++++||+... +.+.+.-....|+++.+.
T Consensus 210 -------e~l~~~~ghtn~vYsis~~---~~~~~Ivs~gEDrtlriW~~~e-----------~~q~I~lPttsiWsa~~L 268 (745)
T KOG0301|consen 210 -------EVLLEMHGHTNFVYSISMA---LSDGLIVSTGEDRTLRIWKKDE-----------CVQVITLPTTSIWSAKVL 268 (745)
T ss_pred -------ceeeeeeccceEEEEEEec---CCCCeEEEecCCceEEEeecCc-----------eEEEEecCccceEEEEEe
Confidence 6778899999999999977 7889999999999999999773 222333334488888887
Q ss_pred cCCCCcEEEeeCCCeEEEeeC
Q 018858 328 PTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+ +| -+++|++||.||||..
T Consensus 269 ~-Ng-DIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 269 L-NG-DIVVGGSDGRVRVFTV 287 (745)
T ss_pred e-CC-CEEEeccCceEEEEEe
Confidence 7 55 4999999999999975
No 89
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=6.7e-30 Score=204.08 Aligned_cols=284 Identities=15% Similarity=0.185 Sum_probs=223.9
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC---cEEEEeec--CCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK---DVQLVTDV--GNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+.+| .|.+-|.++.++.. .++++||+. |.|+|||+... .++..+.. ....+.++.+.|+|+.|++|++-.++
T Consensus 413 ~~tL-~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 413 INTL-AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred hhhh-ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence 3444 48888888888887 789999986 78999999643 22333332 35678899999999999999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
.|||+.... .+....+.........++.+||.+..++++.||.|.|||+.+...++.|+ +|.+.+.||..++
T Consensus 490 siWDLAapT-prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~------ 561 (705)
T KOG0639|consen 490 SIWDLAAPT-PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISK------ 561 (705)
T ss_pred eeeeccCCC-cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecC------
Confidence 999998643 22222333333467889999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
+|..|-+|+-|.+||-||++.++.+ ......++|.++..+|++.++++
T Consensus 562 ------------------------------dGtklWTGGlDntvRcWDlregrql--qqhdF~SQIfSLg~cP~~dWlav 609 (705)
T KOG0639|consen 562 ------------------------------DGTKLWTGGLDNTVRCWDLREGRQL--QQHDFSSQIFSLGYCPTGDWLAV 609 (705)
T ss_pred ------------------------------CCceeecCCCccceeehhhhhhhhh--hhhhhhhhheecccCCCccceee
Confidence 8999999999999999999986543 33445678999999999999996
Q ss_pred -eeeeeecCce-eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 243 -MEILDQSGGK-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 243 -~~~~~~~~~~-~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
+.+....+.. .....+.+..|+..|.++.|+ +-|+++++.+.|+.+..|...-+. .++.. .-...
T Consensus 610 GMens~vevlh~skp~kyqlhlheScVLSlKFa---~cGkwfvStGkDnlLnawrtPyGa---------siFqs-kE~Ss 676 (705)
T KOG0639|consen 610 GMENSNVEVLHTSKPEKYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGA---------SIFQS-KESSS 676 (705)
T ss_pred ecccCcEEEEecCCccceeecccccEEEEEEec---ccCceeeecCchhhhhhccCcccc---------ceeec-cccCc
Confidence 2222222211 122334566789999999999 899999999999999999998873 32222 34568
Q ss_pred eEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 321 VNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|.++.++. |.++++||+.|....||.+
T Consensus 677 VlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 677 VLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeeecc-CceEEEecCCCcceEEEEE
Confidence 89999977 7789999999998888865
No 90
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.1e-28 Score=181.87 Aligned_cols=264 Identities=13% Similarity=0.166 Sum_probs=197.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----cEEEEeecCCCCeEEEEEec--CCCEEEEEeCCCeEEEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd 86 (349)
+|++-|.|+.|.+. |+.+|||+.|++++|||.++. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 11 ~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred CCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 79999999999998 899999999999999996543 34567788999999999964 689999999999999997
Q ss_pred ccC------CCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCceEec------eec------cccc
Q 018858 87 VHM------PASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLYK------SLR------AGHS 146 (349)
Q Consensus 87 ~~~------~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~------~~~------~~~~ 146 (349)
=.. +........+......|+.+.|.|. |-.+|+++.||.++||+.-..-.+. +++ ..+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 1233344556666788999999995 6789999999999999875432222 221 1244
Q ss_pred cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC-----CeEEEEEccCceeeeecC
Q 018858 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVINIESELNISRSK 221 (349)
Q Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~ 221 (349)
.+..|+.|+|.. ....+|++|+.+ +.+.||.....
T Consensus 170 ~~~~CvsWn~sr---------------------------------~~~p~iAvgs~e~a~~~~~~~Iye~~e~------- 209 (361)
T KOG2445|consen 170 QPCFCVSWNPSR---------------------------------MHEPLIAVGSDEDAPHLNKVKIYEYNEN------- 209 (361)
T ss_pred CcceEEeecccc---------------------------------ccCceEEEEcccCCccccceEEEEecCC-------
Confidence 566777777621 145678888766 47888887753
Q ss_pred CCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEee-ecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM-FGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~-~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.+....+.++.+|..+|++|+|.| .+..-..||+++.|| |+||.+....
T Consensus 210 -----------------------------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 210 -----------------------------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred -----------------------------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeecc
Confidence 223455667889999999999996 112235789999999 9999998522
Q ss_pred ce-----------ecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 301 GV-----------QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 301 ~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.. ...-+-..+..+.+|++.|..+.|+- .|..|++.|+||.|++|..
T Consensus 260 s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 260 SAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred chhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhh
Confidence 10 00111244556778999999999976 7889999999999999974
No 91
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=196.95 Aligned_cols=248 Identities=12% Similarity=0.128 Sum_probs=199.6
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
.+.+..|...|.-+.||++|++||+++.|.+..+|++......+...++.+|..+|..+.|+||.+++++++.+..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 45677899999999999999999999999999999987655567778889999999999999999999999999999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
|+.++.....++.++...+.+++|.| |+..+++|+.|+.+..||
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p------------------------------------Dg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP------------------------------------DGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc------------------------------------CCceeEecCCCCcEEEec
Confidence 99999998888745568899999999 899999999999999999
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCce-e--eeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-R--LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
+..+. ...........+..++..+||++++.+. .|..+.. . ...-..+.....+|+++.++ .+++++++.=.
T Consensus 341 lDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS---~d~k~~LvnL~ 415 (519)
T KOG0293|consen 341 LDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSIS---KDGKLALVNLQ 415 (519)
T ss_pred CCcch-hhcccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccccccCceeEEEEc---CCCcEEEEEcc
Confidence 98643 2222333335578899999999998644 2222111 0 01111122335689999999 89999999999
Q ss_pred CCeEEEEecCCCcceecccccceeeeccccccc--eEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK--VNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+..+++||++.. .++..+.+|... +..-||--.+..++++|+.|++|+||+.
T Consensus 416 ~qei~LWDl~e~---------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 416 DQEIHLWDLEEN---------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred cCeeEEeecchh---------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 999999999976 677788888764 4444665556679999999999999985
No 92
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=213.60 Aligned_cols=215 Identities=14% Similarity=0.191 Sum_probs=173.3
Q ss_pred EEEee-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC--------------------------------CC------
Q 018858 51 QLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM--------------------------------PA------ 91 (349)
Q Consensus 51 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------------------------------~~------ 91 (349)
.+.+. .|.+.|.++.|+++|+|||+||.|+.|+||.+.. ..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34555 7999999999999999999999999999998755 00
Q ss_pred -------------------cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEE
Q 018858 92 -------------------SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV 152 (349)
Q Consensus 92 -------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 152 (349)
..+++..+.+|.+.|.++.|+. .++|++++.|++|++|++...+++..|. |.+-|+|+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEE
Confidence 1133445678889999999996 4689999999999999999999999998 99999999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
+|+|. |.++|++|+-||.||||++...
T Consensus 416 aFnPv-----------------------------------DDryFiSGSLD~KvRiWsI~d~------------------ 442 (712)
T KOG0283|consen 416 AFNPV-----------------------------------DDRYFISGSLDGKVRLWSISDK------------------ 442 (712)
T ss_pred Eeccc-----------------------------------CCCcEeecccccceEEeecCcC------------------
Confidence 99996 8999999999999999999863
Q ss_pred eeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee
Q 018858 233 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
.+-....-..-|++++|. |||++.+.|+.+|..++|+....+.....+-.-.-.
T Consensus 443 -----------------------~Vv~W~Dl~~lITAvcy~---PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 443 -----------------------KVVDWNDLRDLITAVCYS---PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred -----------------------eeEeehhhhhhheeEEec---cCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 122222334679999999 899999999999999999998875332211000000
Q ss_pred eccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 313 KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.-..|. .|+.+.|+|.+...+++.+.|..|+|+|+
T Consensus 497 Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 497 KKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred ccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 111244 89999999977777999999999999997
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.4e-29 Score=195.78 Aligned_cols=248 Identities=17% Similarity=0.222 Sum_probs=197.4
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
++|.+.|.+++.+++ ++||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|+++.
T Consensus 199 ~~h~keil~~avS~D-gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-- 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSD-GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-- 275 (479)
T ss_pred ccccceeEEEEEcCC-CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH--
Confidence 489999999999999 89999999999999999999999999999999999999998888999999999999999985
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
...+.++.+|.+.|..+.....++.+-+|+.|.++++|++.... ...+. ++.+.+-|++|-.
T Consensus 276 -~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifr-g~~~sidcv~~In--------------- 337 (479)
T KOG0299|consen 276 -LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFR-GGEGSIDCVAFIN--------------- 337 (479)
T ss_pred -hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeee-CCCCCeeeEEEec---------------
Confidence 35566777889999999888888888888899999999995332 23455 6788899999875
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 251 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
...|++|+.+|.|.+|++-+.+.+......++.
T Consensus 338 ----------------------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv------------------------- 370 (479)
T KOG0299|consen 338 ----------------------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV------------------------- 370 (479)
T ss_pred ----------------------ccceeeccCCceEEEeeecccCceeEeeccccc-------------------------
Confidence 578999999999999999876544433222100
Q ss_pred eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCC
Q 018858 252 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 331 (349)
Q Consensus 252 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 331 (349)
......-.+...|++++.. |...++++|+.+|.|++|-+..+.... .++..+ ...+.|++++|++ +|
T Consensus 371 ---~~~~~~~~~~~Witsla~i---~~sdL~asGS~~G~vrLW~i~~g~r~i-----~~l~~l-s~~GfVNsl~f~~-sg 437 (479)
T KOG0299|consen 371 ---IPELDPVNGNFWITSLAVI---PGSDLLASGSWSGCVRLWKIEDGLRAI-----NLLYSL-SLVGFVNSLAFSN-SG 437 (479)
T ss_pred ---cCCccccccccceeeeEec---ccCceEEecCCCCceEEEEecCCcccc-----ceeeec-ccccEEEEEEEcc-CC
Confidence 0000011233589999999 888999999999999999999873211 233333 3678999999987 77
Q ss_pred CcEEEe-eCC
Q 018858 332 ENLVVC-DTS 340 (349)
Q Consensus 332 ~~l~~~-~~d 340 (349)
+.+++| +..
T Consensus 438 k~ivagiGkE 447 (479)
T KOG0299|consen 438 KRIVAGIGKE 447 (479)
T ss_pred CEEEEecccc
Confidence 766655 443
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.6e-29 Score=182.83 Aligned_cols=240 Identities=17% Similarity=0.210 Sum_probs=194.6
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEE
Q 018858 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKII 130 (349)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~ 130 (349)
..+++|.+.|.+++|+.+|..+++++.|+++.+|+++.... ..-....+|.+.|..++|+|. ...|++++.|++|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 45667889999999999999999999999999999986532 222345678888999999885 4889999999999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
|.+.+++..... ..+.-.-+.|+| +|.++++++.|..|.+.|
T Consensus 93 d~r~~k~~~~i~--~~~eni~i~wsp------------------------------------~g~~~~~~~kdD~it~id 134 (313)
T KOG1407|consen 93 DIRSGKCTARIE--TKGENINITWSP------------------------------------DGEYIAVGNKDDRITFID 134 (313)
T ss_pred EeccCcEEEEee--ccCcceEEEEcC------------------------------------CCCEEEEecCcccEEEEE
Confidence 999999988876 344455678888 899999999999999999
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEE-Eeee--eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDA-EMEI--LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
.++.+...... .......++|+.++.++. +.|. .+.-....++++..+++|...-.||.|+ |+|+|+|+|+.
T Consensus 135 ~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~---p~GryfA~GsA 209 (313)
T KOG1407|consen 135 ARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFD---PDGRYFATGSA 209 (313)
T ss_pred ecccceeehhc--ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEEC---CCCceEeeccc
Confidence 99865444332 234556777886666554 3332 2222334667888999999999999999 99999999999
Q ss_pred CCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEE
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 345 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 345 (349)
|-.+.+||++.. -.+..+..+.-+|..+.|+. +|++|++++.|..|-|
T Consensus 210 DAlvSLWD~~EL---------iC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 210 DALVSLWDVDEL---------ICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDI 257 (313)
T ss_pred cceeeccChhHh---------hhheeeccccCceEEEEecc-CcceeeccCccceEEe
Confidence 999999999987 66778888999999999976 9999999999987754
No 95
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=3.6e-29 Score=197.27 Aligned_cols=228 Identities=18% Similarity=0.285 Sum_probs=184.7
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-------EEEEeecCCCCeEEEEEec-CCCEEEEEe
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------VQLVTDVGNGPVTSLCFKS-GNEDIIYVS 77 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 77 (349)
.+-.+|.+|++.-+.++|++...-.|++++.|+.|++||+.... ....+.+|...|..++|++ +.+.+++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 34458999999889999999877789999999999999986422 3567889999999999998 455688899
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEc
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~ 155 (349)
.|+.+.|||++++ ..++.....+|...+.|++|+|- +..||+|+.|++|++||+|+. +++.++. +|...|..+.|+
T Consensus 248 dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WS 325 (422)
T KOG0264|consen 248 DDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWS 325 (422)
T ss_pred CCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeC
Confidence 9999999999974 44566667789999999999995 477899999999999999964 4677888 999999999999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
|. ....|++++.|+.+.+||+..-......
T Consensus 326 Ph-----------------------------------~etvLASSg~D~rl~vWDls~ig~eq~~--------------- 355 (422)
T KOG0264|consen 326 PH-----------------------------------NETVLASSGTDRRLNVWDLSRIGEEQSP--------------- 355 (422)
T ss_pred CC-----------------------------------CCceeEecccCCcEEEEeccccccccCh---------------
Confidence 96 6789999999999999999852111100
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
+-......+++..-.||...|..+.|+| .+...+++.++|+.+.||.+..
T Consensus 356 -----------eda~dgppEllF~HgGH~~kV~DfsWnp--~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 -----------EDAEDGPPELLFIHGGHTAKVSDFSWNP--NEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred -----------hhhccCCcceeEEecCcccccccccCCC--CCCeEEEEecCCceEEEeeccc
Confidence 0001223466778889999999999994 2334678889999999999875
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.5e-30 Score=195.22 Aligned_cols=206 Identities=19% Similarity=0.294 Sum_probs=180.0
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccccee-----eccCcccceEEEEEccCCCEEEEEcCCCcEEEEE
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE-----SYNYNKEEINQIVCNPKSSFLACADDGGDVKIID 131 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 131 (349)
..+-+.|..|+|+|++|++|+.||.|.+|+.-+++..+.++ .+..++.+|.|+.|+.|...+|+|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 34567889999999999999999999999999887555443 3445678999999999999999999999999999
Q ss_pred cCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEc
Q 018858 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 211 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 211 (349)
+++|.+++.|...|...|+|+.|+. ++..+++++.|.++++.-+
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSr------------------------------------D~SqiLS~sfD~tvRiHGl 335 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSR------------------------------------DNSQILSASFDQTVRIHGL 335 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEcc------------------------------------CcchhhcccccceEEEecc
Confidence 9999999999768999999999999 7888999999999999999
Q ss_pred cCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeE
Q 018858 212 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291 (349)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i 291 (349)
+++ ++++.+++|.+.|+...|. ++|..+++++.||+|
T Consensus 336 KSG----------------------------------------K~LKEfrGHsSyvn~a~ft---~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 336 KSG----------------------------------------KCLKEFRGHSSYVNEATFT---DDGHHIISASSDGTV 372 (508)
T ss_pred ccc----------------------------------------hhHHHhcCccccccceEEc---CCCCeEEEecCCccE
Confidence 986 7888999999999999999 999999999999999
Q ss_pred EEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 292 KVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 292 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+||+.++.++..+ ....+...+|+++-..|.+...+++|...++|+|-++
T Consensus 373 kvW~~KtteC~~T-------fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~ 422 (508)
T KOG0275|consen 373 KVWHGKTTECLST-------FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM 422 (508)
T ss_pred EEecCcchhhhhh-------ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec
Confidence 9999999854321 1223456688999888988889999999999998776
No 97
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6e-30 Score=213.94 Aligned_cols=239 Identities=19% Similarity=0.241 Sum_probs=193.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCC---CcEEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRS---KDVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
.+..+.|.....++|||++..|.|.+||+.. .+++..+..|...+.++.|++ ...+|++|+.||.|++||++..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~- 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK- 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-
Confidence 3556677765578999999999999999986 556678889999999999988 45678999999999999999653
Q ss_pred ccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 93 WRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
...++.+....|..+.|+| .+..|+++.+.|.+.+||+|.. ++...+. .|.++|.|+.|+|
T Consensus 168 --S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhP-------------- 230 (839)
T KOG0269|consen 168 --SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHP-------------- 230 (839)
T ss_pred --ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh-cccCceEEEeecC--------------
Confidence 3444555678899999999 4688999999999999999965 4556677 8999999999999
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 250 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
++.+||+|+.|+.|+|||..+.+
T Consensus 231 ----------------------nr~~lATGGRDK~vkiWd~t~~~----------------------------------- 253 (839)
T KOG0269|consen 231 ----------------------NREWLATGGRDKMVKIWDMTDSR----------------------------------- 253 (839)
T ss_pred ----------------------CCceeeecCCCccEEEEeccCCC-----------------------------------
Confidence 78999999999999999998632
Q ss_pred ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee--CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec
Q 018858 251 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 251 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
.....++. ...++.++.|-| .....|++++ .|-.|+|||++... -+...+..|...++.++|-.
T Consensus 254 ---~~~~~tIn-Tiapv~rVkWRP--~~~~hLAtcsmv~dtsV~VWDvrRPY--------IP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 254 ---AKPKHTIN-TIAPVGRVKWRP--ARSYHLATCSMVVDTSVHVWDVRRPY--------IPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ---ccceeEEe-ecceeeeeeecc--CccchhhhhhccccceEEEEeecccc--------ccceeeeccCccccceeccC
Confidence 12222332 246899999994 3334567665 68899999999864 34567788999999999977
Q ss_pred CCCCcEEEeeCCCeEE
Q 018858 329 TESENLVVCDTSKVVK 344 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~ 344 (349)
.|...+.+++.||+|.
T Consensus 320 ~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 320 GDRINLWSCSKDGTVL 335 (839)
T ss_pred CCceeeEeecCccHHH
Confidence 6777899999999764
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2e-28 Score=196.10 Aligned_cols=288 Identities=14% Similarity=0.085 Sum_probs=210.5
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE----EEEe-ecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV----QLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
-.|++|+..|.++++.|. |..|++|+.|..|++||+..... .+.+ ......|.+++|++.|+.|++.+.....+
T Consensus 161 i~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 457899999999999998 89999999999999999975432 1222 22345799999999999999999888999
Q ss_pred EEEccCCC---------cccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCc-eEeceecc----ccccc
Q 018858 84 SFDVHMPA---------SWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQH-CLYKSLRA----GHSSI 148 (349)
Q Consensus 84 iwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~----~~~~~ 148 (349)
++|-.-.. -+..+....+|...++|.+|+|.. ..|++++.||++++||+... +.++.++. +..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 99865321 122334456788899999999976 68899999999999999843 33333331 22346
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee----eecCCCC
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI----SRSKSTT 224 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~ 224 (349)
++.++|+| +++.+|.|+.||.|.+|+..+.... ....+..
T Consensus 320 ~tsC~~nr------------------------------------dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~ 363 (641)
T KOG0772|consen 320 VTSCAWNR------------------------------------DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP 363 (641)
T ss_pred ceeeecCC------------------------------------CcchhhhcccCCceeeeecCCcccccceEeeeccCC
Confidence 78888988 8899999999999999998653221 1223344
Q ss_pred CCccceeeeeccccEEEEeeeee---ecCce-eeeeeeeecCC--CcceEEEEEeeecCCccEEEEee------CCCeEE
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILD---QSGGK-RLHLDYSVGGH--TAAASCVAFSMFGERGKYLISGG------NDKLVK 292 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~h--~~~i~~i~~~~~~~~~~~l~s~~------~d~~i~ 292 (349)
+..|.+++||+||++|++-+..+ .+... ..+++....+- ..+-+.+.|+ |+.++|++|. ..|++.
T Consensus 364 g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS---Pd~kli~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 364 GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS---PDDKLILTGTSAPNGMTAGTLF 440 (641)
T ss_pred CCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC---CCceEEEecccccCCCCCceEE
Confidence 56899999999999999643322 12111 11233332221 2345678899 8999999986 347899
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
+||..+. ..+..+.-....|..+.|+|.- +.|++++.||.++|+
T Consensus 441 f~d~~t~---------d~v~ki~i~~aSvv~~~WhpkL-NQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 441 FFDRMTL---------DTVYKIDISTASVVRCLWHPKL-NQIFAGSGDGTAHVY 484 (641)
T ss_pred EEeccce---------eeEEEecCCCceEEEEeecchh-hheeeecCCCceEEE
Confidence 9999987 4444444457788999999954 458888888999886
No 99
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.4e-28 Score=191.05 Aligned_cols=283 Identities=15% Similarity=0.161 Sum_probs=226.4
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEEccCCC
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 91 (349)
.+.|+++.|+|. ..+|++++.||++++|.++.. ..++.+.....+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 367999999998 899999999999999998643 34677777789999999999999 89999999999999999865
Q ss_pred cccceeeccCc-ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYN-KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 92 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
. ..+....++ +..+.....+|++++|+..+..|.|.+.-..+++.+..++ -.+.+..+.|+.
T Consensus 292 ~-~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsS-------------- 354 (514)
T KOG2055|consen 292 V-TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSS-------------- 354 (514)
T ss_pred c-ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEec--------------
Confidence 3 233333222 3457788899999999999999999999999999999998 778899999998
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee--
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ-- 248 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 248 (349)
+++.|++.+.+|.|.+||++...+...+.......-..++.++++.++|+ |+..+
T Consensus 355 ----------------------dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~-GS~~GiV 411 (514)
T KOG2055|consen 355 ----------------------DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT-GSDSGIV 411 (514)
T ss_pred ----------------------CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEe-ccCcceE
Confidence 78999999999999999999998888877776667778899999999995 32222
Q ss_pred --cC------ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee--CCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 249 --SG------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 249 --~~------~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
.. ....+++..+..-...|+++.|+ ++.++||.+| .+..+++-.+.+...-... + .....-
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn---~d~qiLAiaS~~~knalrLVHvPS~TVFsNf----P--~~n~~v 482 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN---HDAQILAIASRVKKNALRLVHVPSCTVFSNF----P--TSNTKV 482 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeC---cchhhhhhhhhccccceEEEeccceeeeccC----C--CCCCcc
Confidence 21 12345566666566789999999 8999998877 4678999998886321100 0 112234
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.|+|++|+| .+.+|+.|..+|.+.+|.|
T Consensus 483 g~vtc~aFSP-~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 483 GHVTCMAFSP-NSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred cceEEEEecC-CCceEEeecCCCceeeEee
Confidence 5799999999 5669999999999999987
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.8e-29 Score=207.36 Aligned_cols=246 Identities=18% Similarity=0.290 Sum_probs=195.3
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecC---CCCeEEEEEec-CCCEEEEEeCCCeEEEEEc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVG---NGPVTSLCFKS-GNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~---~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 87 (349)
....++...++ ...++.++. ..++||.+.... +...+... ...+..+.|.. ..++||+++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCC-cceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 45566777787 566776665 467888765422 12221111 12344567764 5678999999999999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
......+.+..+..|+..+.++.|++.. .+|++|++||.|++||++..+-..++. +....|+.+.|+|.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~--------- 187 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPG--------- 187 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccC---------
Confidence 8644456667788899999999999865 788999999999999999888888888 78889999999994
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.+.+|+++...|.+.+||++...
T Consensus 188 --------------------------~~~~F~s~~dsG~lqlWDlRqp~------------------------------- 210 (839)
T KOG0269|consen 188 --------------------------YGNKFASIHDSGYLQLWDLRQPD------------------------------- 210 (839)
T ss_pred --------------------------CCceEEEecCCceEEEeeccCch-------------------------------
Confidence 68899999999999999999632
Q ss_pred eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEe
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 326 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (349)
++...+.+|.++|.++.|+ |++.+|||||.|+.|+|||+.+.+ ...........++..+.|
T Consensus 211 --------r~~~k~~AH~GpV~c~nwh---Pnr~~lATGGRDK~vkiWd~t~~~--------~~~~~tInTiapv~rVkW 271 (839)
T KOG0269|consen 211 --------RCEKKLTAHNGPVLCLNWH---PNREWLATGGRDKMVKIWDMTDSR--------AKPKHTINTIAPVGRVKW 271 (839)
T ss_pred --------hHHHHhhcccCceEEEeec---CCCceeeecCCCccEEEEeccCCC--------ccceeEEeecceeeeeee
Confidence 5667889999999999999 899999999999999999998753 222233445678999999
Q ss_pred ecCCCCcEEEee--CCCeEEEeeCC
Q 018858 327 TPTESENLVVCD--TSKVVKVYSIS 349 (349)
Q Consensus 327 ~~~~~~~l~~~~--~dg~i~iw~~~ 349 (349)
-|.....|++++ .|-.|+|||++
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred ccCccchhhhhhccccceEEEEeec
Confidence 997777899986 78999999985
No 101
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.5e-28 Score=185.08 Aligned_cols=213 Identities=16% Similarity=0.263 Sum_probs=171.2
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC------C---------CcccceeeccCcccceEEEEEccCC
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM------P---------ASWRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~---------~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
...+..|.+++.+.+|+|||.++++|+.|..|+|.|++. . +....+.++-.|.++|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345667999999999999999999999999999999872 1 1124556677788999999999999
Q ss_pred CEEEEEcCCCcEEEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC
Q 018858 116 SFLACADDGGDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN 194 (349)
Q Consensus 116 ~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
..|++|+.|++|++||+......+.++ .....+|.++.|+| .|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP------------------------------------sG 228 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP------------------------------------SG 228 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC------------------------------------CC
Confidence 999999999999999998554333222 02456899999999 89
Q ss_pred cEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEee
Q 018858 195 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM 274 (349)
Q Consensus 195 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~ 274 (349)
.+|++|..-.++++||+++.++-... ..-.+|.+.|+++.++
T Consensus 229 efllvgTdHp~~rlYdv~T~Qcfvsa-------------------------------------nPd~qht~ai~~V~Ys- 270 (430)
T KOG0640|consen 229 EFLLVGTDHPTLRLYDVNTYQCFVSA-------------------------------------NPDDQHTGAITQVRYS- 270 (430)
T ss_pred ceEEEecCCCceeEEeccceeEeeec-------------------------------------CcccccccceeEEEec-
Confidence 99999999999999999985322111 1234689999999999
Q ss_pred ecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec-cccccc-eEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 275 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-INLNKK-VNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+++.++++.||.|++||=-++ +++..+ ..|.+. |.+..| ..+++++++.+.|..+++|.+.
T Consensus 271 --~t~~lYvTaSkDG~IklwDGVS~---------rCv~t~~~AH~gsevcSa~F-tkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 271 --STGSLYVTASKDGAIKLWDGVSN---------RCVRTIGNAHGGSEVCSAVF-TKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred --CCccEEEEeccCCcEEeeccccH---------HHHHHHHhhcCCceeeeEEE-ccCCeEEeecCCcceeeeeeec
Confidence 89999999999999999998776 444444 346664 555555 5699999999999999999874
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.9e-29 Score=204.77 Aligned_cols=251 Identities=14% Similarity=0.109 Sum_probs=208.7
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEeecCCCCeEEEEE-ecCCCEEEEEeCCCeEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCF-KSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~ 83 (349)
.+.+++.|.+.|..++...+ ++.|++++.|.+|++|+...+ -+..++..|..-|.|+++ .++...+|+||-|+.|.
T Consensus 65 ~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If 143 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF 143 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence 36788899999999999887 889999999999999999876 356678889999999999 78888999999999999
Q ss_pred EEEccCCCc--c-----cceeecc-CcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 84 SFDVHMPAS--W-----RPLESYN-YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 84 iwd~~~~~~--~-----~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
+||++++.. . .....+. ++...+++++.++.+..|++|+..+.+++||.++++.+..++ +|...|.++..+
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~ 222 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVN 222 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEc
Confidence 999997622 1 1122233 678899999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
+ +|..+++++.||+|++||+...
T Consensus 223 d------------------------------------DGt~~ls~sSDgtIrlWdLgqQ--------------------- 245 (735)
T KOG0308|consen 223 D------------------------------------DGTRLLSASSDGTIRLWDLGQQ--------------------- 245 (735)
T ss_pred C------------------------------------CCCeEeecCCCceEEeeecccc---------------------
Confidence 9 8999999999999999999974
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
+++.++..|...|+++..+ |+-..+++|+.||.|+.=|+++.. ....+.
T Consensus 246 -------------------rCl~T~~vH~e~VWaL~~~---~sf~~vYsG~rd~~i~~Tdl~n~~---------~~tlic 294 (735)
T KOG0308|consen 246 -------------------RCLATYIVHKEGVWALQSS---PSFTHVYSGGRDGNIYRTDLRNPA---------KSTLIC 294 (735)
T ss_pred -------------------ceeeeEEeccCceEEEeeC---CCcceEEecCCCCcEEecccCCch---------hheEee
Confidence 6778888899999999999 888999999999999999999862 222222
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
....+|..+..+..+. -+-+++.|+.|+-|.+
T Consensus 295 k~daPv~~l~~~~~~~-~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 295 KEDAPVLKLHLHEHDN-SVWVTTTDSSIKRWKL 326 (735)
T ss_pred cCCCchhhhhhccccC-CceeeeccccceecCC
Confidence 3334555555544333 3466677888887764
No 103
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=7e-28 Score=180.26 Aligned_cols=221 Identities=18% Similarity=0.285 Sum_probs=173.3
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc------E----EEE-----eecCCCCeEEEEEec-CCCEEEE
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD------V----QLV-----TDVGNGPVTSLCFKS-GNEDIIY 75 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~------~----~~~-----~~~~~~~v~~~~~~~-~~~~l~~ 75 (349)
..|.+.|+++...+.-++++++|+.||.|.+||++... . ... -.+|.-.|..+.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999999879999999999999999997532 1 111 134778899999998 6667888
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC---CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEE
Q 018858 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS---SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV 152 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 152 (349)
++.|.++++||..+.+....++- ++.|..-+++|-. .++|+|..+-.|++-|+.+|.....+. +|...|.++
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~m----e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV 194 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKM----EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAV 194 (397)
T ss_pred ccccceEEEeecccceeeEEeec----CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEE
Confidence 89999999999997644333222 4678888888843 477888899999999999999999999 999999999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce-eeeecCCCCCCcccee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL-NISRSKSTTKPLKGSQ 231 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~ 231 (349)
.|+|. ..-.|++|+.||.|++||++... +...+
T Consensus 195 ~Wsp~-----------------------------------~e~vLatgsaDg~irlWDiRrasgcf~~l----------- 228 (397)
T KOG4283|consen 195 EWSPS-----------------------------------SEWVLATGSADGAIRLWDIRRASGCFRVL----------- 228 (397)
T ss_pred EeccC-----------------------------------ceeEEEecCCCceEEEEEeecccceeEEe-----------
Confidence 99994 44568899999999999999631 11111
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
|.........++.-..|.+.++.++|+ .++.++++++.|..+++|+..+++.
T Consensus 229 ---------------D~hn~k~~p~~~~n~ah~gkvngla~t---Sd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 229 ---------------DQHNTKRPPILKTNTAHYGKVNGLAWT---SDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ---------------ecccCccCccccccccccceeeeeeec---ccchhhhhccCccceEEeecccCcc
Confidence 111011123334556799999999999 8999999999999999999988764
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.4e-28 Score=182.47 Aligned_cols=257 Identities=14% Similarity=0.161 Sum_probs=209.1
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEEC------CC-----------------------------
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL------RS----------------------------- 47 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~------~~----------------------------- 47 (349)
+++.++.++.||.+.|+|+.|++. +.++++++.|++-.||.. ..
T Consensus 178 Esg~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s 256 (481)
T KOG0300|consen 178 ESGACLATYTGHTGSVNSIKFHNS-GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS 256 (481)
T ss_pred ccccceeeecccccceeeEEeccc-cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence 367889999999999999999998 899999999999999972 11
Q ss_pred -C----cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEc
Q 018858 48 -K----DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 48 -~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 122 (349)
+ -++..+.+|...|.+..|...|+.+++++.|.+-.+||++++ ..+..+.+|....+.++-+|..+++++++
T Consensus 257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg---e~v~~LtGHd~ELtHcstHptQrLVvTsS 333 (481)
T KOG0300|consen 257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG---EVVNILTGHDSELTHCSTHPTQRLVVTSS 333 (481)
T ss_pred CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC---ceeccccCcchhccccccCCcceEEEEec
Confidence 0 124567889999999999999999999999999999999987 45566778889999999999999999999
Q ss_pred CCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc
Q 018858 123 DGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 201 (349)
Q Consensus 123 ~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (349)
.|-+.++||++.. ..+..|+ +|...|++..|.- +..+++|+
T Consensus 334 rDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~-------------------------------------dd~vVSgS 375 (481)
T KOG0300|consen 334 RDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNT-------------------------------------DDRVVSGS 375 (481)
T ss_pred cCceeEeccchhhcceeeeec-ccccceeEEEEec-------------------------------------CCceeecC
Confidence 9999999999843 4567788 9999999999986 45689999
Q ss_pred CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccE
Q 018858 202 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 281 (349)
Q Consensus 202 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~ 281 (349)
.|.+|++||+++-+ .++.++. ...+++.++++ ..++.
T Consensus 376 DDrTvKvWdLrNMR---------------------------------------splATIR-tdS~~NRvavs---~g~~i 412 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMR---------------------------------------SPLATIR-TDSPANRVAVS---KGHPI 412 (481)
T ss_pred CCceEEEeeecccc---------------------------------------Ccceeee-cCCccceeEee---cCCce
Confidence 99999999999732 2333444 24678999998 67778
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCC-CcEEEeeCCCeEEEeeCC
Q 018858 282 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 282 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~ 349 (349)
++.--.+..|++||++...... -+...-.+|...|.+++|..... .-|++|+.|..+.=|++.
T Consensus 413 IAiPhDNRqvRlfDlnG~RlaR-----lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 413 IAIPHDNRQVRLFDLNGNRLAR-----LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred EEeccCCceEEEEecCCCcccc-----CCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 8888888999999998852110 11123357999999999964211 359999999999999863
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=7.7e-28 Score=199.14 Aligned_cols=241 Identities=17% Similarity=0.271 Sum_probs=204.2
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE--EEeecCCCCeEE-EEEec-CCCEEEEEeCCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVTDVGNGPVTS-LCFKS-GNEDIIYVSSGK 80 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg 80 (349)
-+.-+.+.+|+..|..+++.+. ..+++++.||++++|+-...+.+ ..+.+|.+.|.. +++.+ ++-.+++|+.|.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecCC--eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 4677899999999999888754 57999999999999997655543 456667777766 77775 445699999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
.+.+|..... .++..+.+|+..|.+++...++. +++|+.|.++++|-. +++...++ +|...|+++...|
T Consensus 82 ~i~v~~~~~~---~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~-gH~asVWAv~~l~---- 150 (745)
T KOG0301|consen 82 TIIVFKLSQA---EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ-GHTASVWAVASLP---- 150 (745)
T ss_pred eEEEEecCCC---CchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccC-CcchheeeeeecC----
Confidence 9999998854 66777888999999999877776 999999999999975 55566688 9999999999998
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++ .+++|+.|..|++|.-.
T Consensus 151 --------------------------------e~-~~vTgsaDKtIklWk~~---------------------------- 169 (745)
T KOG0301|consen 151 --------------------------------EN-TYVTGSADKTIKLWKGG---------------------------- 169 (745)
T ss_pred --------------------------------CC-cEEeccCcceeeeccCC----------------------------
Confidence 44 88999999999999875
Q ss_pred EEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 241 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
+.++++.+|...|+.+++- + +.-+++++.||.|+.|++.. ..+....+|..-
T Consensus 170 --------------~~l~tf~gHtD~VRgL~vl---~-~~~flScsNDg~Ir~w~~~g----------e~l~~~~ghtn~ 221 (745)
T KOG0301|consen 170 --------------TLLKTFSGHTDCVRGLAVL---D-DSHFLSCSNDGSIRLWDLDG----------EVLLEMHGHTNF 221 (745)
T ss_pred --------------chhhhhccchhheeeeEEe---c-CCCeEeecCCceEEEEeccC----------ceeeeeeccceE
Confidence 5678999999999999998 4 45688999999999999955 678899999999
Q ss_pred eEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 321 VNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|+++.... ++..++++++|++++||+.
T Consensus 222 vYsis~~~-~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 222 VYSISMAL-SDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred EEEEEecC-CCCeEEEecCCceEEEeec
Confidence 99999655 5558999999999999984
No 106
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.2e-26 Score=172.40 Aligned_cols=245 Identities=12% Similarity=0.095 Sum_probs=187.2
Q ss_pred cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC--CCc
Q 018858 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD--GGD 126 (349)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~ 126 (349)
++.+.+......|.++.|+++|.++++++.|.++++||..+++..+.+.. .+..+..+.|......++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s---kkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS---KKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec---ccccccEEEEecCCceEEEccCCCCCc
Confidence 33445555678899999999999999999999999999998866555544 4567888888777767776665 789
Q ss_pred EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 127 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
|+..++.+.+.++.|. +|...|..++.+| -++.+++++.|++|
T Consensus 82 IryLsl~dNkylRYF~-GH~~~V~sL~~sP------------------------------------~~d~FlS~S~D~tv 124 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFP-GHKKRVNSLSVSP------------------------------------KDDTFLSSSLDKTV 124 (311)
T ss_pred eEEEEeecCceEEEcC-CCCceEEEEEecC------------------------------------CCCeEEecccCCeE
Confidence 9999999999999999 9999999999999 67899999999999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCcee-----eeeeeee--c-CCCcceEEEEEeeecCC
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR-----LHLDYSV--G-GHTAAASCVAFSMFGER 278 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~-~h~~~i~~i~~~~~~~~ 278 (349)
++||++..++...+.. ..-...+|.|+|-++|+....+.....+ ..+..++ . +.....+.+.|+ ||
T Consensus 125 rLWDlR~~~cqg~l~~---~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS---~d 198 (311)
T KOG1446|consen 125 RLWDLRVKKCQGLLNL---SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS---PD 198 (311)
T ss_pred EeeEecCCCCceEEec---CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEc---CC
Confidence 9999997554443322 2234679999999998633322111111 1111222 1 345678999999 99
Q ss_pred ccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc--e-EEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 279 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK--V-NWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 279 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--v-~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|++|+.+...+.+++.|.-++ .++..+..+... + ...+|.| |++++++|+.||.|.+|+++
T Consensus 199 GK~iLlsT~~s~~~~lDAf~G---------~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 199 GKSILLSTNASFIYLLDAFDG---------TVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred CCEEEEEeCCCcEEEEEccCC---------cEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcC
Confidence 999999999999999999998 444444444332 2 3455666 99999999999999999974
No 107
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.4e-29 Score=208.98 Aligned_cols=238 Identities=17% Similarity=0.321 Sum_probs=209.8
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
+.+..|...|.|+..-.. ++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++....|++|+.+|+|++||++
T Consensus 22 ~~~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhhhceeeeecc-ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 455678889999888555 7899999999999999998887788899999999999999999999999999999999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
.. +.+.++.+|...+..+.|+|-+.+++.|+.|..+++||.+...+...++ +|...+..+.|+|
T Consensus 101 eA---k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP------------ 164 (825)
T KOG0267|consen 101 EA---KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSP------------ 164 (825)
T ss_pred hh---hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecC------------
Confidence 75 4455777888999999999999999999999999999999888889999 8999999999999
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
+|++++.|+.|..+++||+..+
T Consensus 165 ------------------------~Gr~v~~g~ed~tvki~d~~ag---------------------------------- 186 (825)
T KOG0267|consen 165 ------------------------DGRWVASGGEDNTVKIWDLTAG---------------------------------- 186 (825)
T ss_pred ------------------------CCceeeccCCcceeeeeccccc----------------------------------
Confidence 8999999999999999999875
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
+....|..|.+.+..+.|+ |..-++++|+.|+++++||+++. ..+.........|.+.+|+|
T Consensus 187 ------k~~~ef~~~e~~v~sle~h---p~e~Lla~Gs~d~tv~f~dletf---------e~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 187 ------KLSKEFKSHEGKVQSLEFH---PLEVLLAPGSSDRTVRFWDLETF---------EVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred ------ccccccccccccccccccC---chhhhhccCCCCceeeeecccee---------EEeeccCCccCCceeeeecC
Confidence 6778899999999999999 78888999999999999999986 45555555678899999988
Q ss_pred CCCCcEEEeeCC
Q 018858 329 TESENLVVCDTS 340 (349)
Q Consensus 329 ~~~~~l~~~~~d 340 (349)
+++.+++|..+
T Consensus 249 -~~~~~~~G~q~ 259 (825)
T KOG0267|consen 249 -DGKIVLSGEQI 259 (825)
T ss_pred -CceeeecCchh
Confidence 88777776543
No 108
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6e-27 Score=176.71 Aligned_cols=210 Identities=14% Similarity=0.215 Sum_probs=175.9
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCc--eEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPG--FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~--~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
..++..|-.|.+.|+++.|.++ .. .|++|+.||.|.+|+.....++.++++|.+.|+.++++|.++.-++.+.|+.+
T Consensus 73 ~~qlg~ll~HagsitaL~F~~~-~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~l 151 (362)
T KOG0294|consen 73 RKQLGILLSHAGSITALKFYPP-LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVL 151 (362)
T ss_pred hhhhcceeccccceEEEEecCC-cchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCcee
Confidence 4567778889999999999986 43 89999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
++||+-+++....+.. ....+.+.|+|.|.+|+.+..+ .|-+|.+.+.++...+. ....+.++.|.
T Consensus 152 r~WNLV~Gr~a~v~~L----~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~--~~~r~l~~~~l------- 217 (362)
T KOG0294|consen 152 RTWNLVRGRVAFVLNL----KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE--NPKRILCATFL------- 217 (362)
T ss_pred eeehhhcCccceeecc----CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh--ccccceeeeec-------
Confidence 9999988765443332 2344559999999999988876 58899998887766665 33557777776
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
++..|++|..|+.|++||....
T Consensus 218 ------------------------------~~~~L~vG~d~~~i~~~D~ds~---------------------------- 239 (362)
T KOG0294|consen 218 ------------------------------DGSELLVGGDNEWISLKDTDSD---------------------------- 239 (362)
T ss_pred ------------------------------CCceEEEecCCceEEEeccCCC----------------------------
Confidence 4788999999999999999863
Q ss_pred eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 243 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.+...+.+|..+|.++.+-. .|++.+|+|+|.||.|+|||++...
T Consensus 240 ------------~~~~~~~AH~~RVK~i~~~~-~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 240 ------------TPLTEFLAHENRVKDIASYT-NPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ------------ccceeeecchhheeeeEEEe-cCCceEEEEeccCceEEEEEccccc
Confidence 56678889999999998431 1678899999999999999998753
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=6.7e-26 Score=191.42 Aligned_cols=337 Identities=14% Similarity=0.134 Sum_probs=244.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEE-EEEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i 82 (349)
+++.+.+++++...|+++.-+|- -..++.|..+|+|.+++++.++.+.+++...+.|++++|..||+.+ ++++..|.+
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m 269 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPA-LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDM 269 (910)
T ss_pred cCcEEEEecccccceeEeccCCc-ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceE
Confidence 67889999999999999999998 7899999999999999999999999999556999999999999875 455566999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC--Cc--eEeceeccccccceeEEEEc-cC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR--QH--CLYKSLRAGHSSICSSVQFI-PW 157 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~--~~~~~~~~~~~~~v~~~~~~-~~ 157 (349)
.+||++..+....+ ...|.+.+....|-|....+++++.|..+++|=.. .+ +.++.-. +|..+..++.|. .+
T Consensus 270 ~~wDLe~kkl~~v~--~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~-GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 270 AFWDLEKKKLINVT--RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG-GHSAPPSCIRFYGSQ 346 (910)
T ss_pred EEEEcCCCeeeeee--eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc-CCCCCchheeeeccC
Confidence 99999965332222 33577889999999999999999999998887555 33 3344444 899999999987 33
Q ss_pred CCCCCC--CCCC----------------------------CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 158 KPWEGL--PENN----------------------------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 158 ~~~~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
+.++.+ .|.+ .......+...+...++....-.. -.+.+++--.+...+
T Consensus 347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~-W~Nv~~~h~~~~~~~ 425 (910)
T KOG1539|consen 347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE-WDNVITAHKGKRSAY 425 (910)
T ss_pred cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh-hcceeEEecCcceEE
Confidence 333211 1110 001112223344444443321111 234555555778899
Q ss_pred EEEccCceeee-ecCCC----CCCccceeeeeccccEEEE---eeeeeecCceeeeeeeee---cCCCcceEEEEEeeec
Q 018858 208 VINIESELNIS-RSKST----TKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSV---GGHTAAASCVAFSMFG 276 (349)
Q Consensus 208 i~d~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~h~~~i~~i~~~~~~ 276 (349)
.|+.++...-. .+... ....+.+++.++-|++... .|..+......+.....+ ..|.++|+.++.+
T Consensus 426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D--- 502 (910)
T KOG1539|consen 426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD--- 502 (910)
T ss_pred EEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEec---
Confidence 99999765422 22222 3456778899999988774 333333333333444455 5799999999998
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceec--------------------------------ccccceeeeccccccceEEE
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQT--------------------------------SINNDLLIKNINLNKKVNWL 324 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~v~~~ 324 (349)
.-++.+++++.||.+++||......... ..+.+++..+.+|.+.|+++
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM 582 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee
Confidence 7788999999999999999987642111 12345667778999999999
Q ss_pred EeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 325 CTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 325 ~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+|+| ||++|++++.|++|++||++
T Consensus 583 ~FS~-DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 583 TFSP-DGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred EeCC-CCcEEEEeecCCcEEEEecc
Confidence 9988 99999999999999999985
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=198.52 Aligned_cols=248 Identities=13% Similarity=0.148 Sum_probs=204.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEec---CCCEEEEEeCCCeEEEEEccC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS---GNEDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~ 89 (349)
+....+.|++.+|+ +++||+|..-|+|+||++...+....++.|...|.|+.|+. ..++||+++.|+.|+|+|+..
T Consensus 457 d~r~G~R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPD-GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CcccceEEEEECCC-cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 34567999999999 99999999999999999999998889999999999999975 457899999999999999974
Q ss_pred CCcccceeeccCcccceEEEEEccCC--CEEEEEcCCCcEEEEEcCCceEeceec----cccccceeEEEEccCCCCCCC
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQHCLYKSLR----AGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~ 163 (349)
....+.++.+|...|+++.|.-.| ..+++++.|+.|.+--.+...-...+. ......++.|+..|
T Consensus 536 --ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp------- 606 (1080)
T KOG1408|consen 536 --NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP------- 606 (1080)
T ss_pred --ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-------
Confidence 356677888899999999998776 778899999887654333111111111 01234577788877
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
+.+++++++.|..|+||++++++..+.+
T Consensus 607 -----------------------------~~k~v~t~cQDrnirif~i~sgKq~k~F----------------------- 634 (1080)
T KOG1408|consen 607 -----------------------------TSKLVVTVCQDRNIRIFDIESGKQVKSF----------------------- 634 (1080)
T ss_pred -----------------------------CcceEEEEecccceEEEeccccceeeee-----------------------
Confidence 7899999999999999999986433222
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
+.-.+|.+....+... |.|.|+++...|+++.++|..++ +++....+|...|+.
T Consensus 635 --------------Kgs~~~eG~lIKv~lD---PSgiY~atScsdktl~~~Df~sg---------EcvA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 635 --------------KGSRDHEGDLIKVILD---PSGIYLATSCSDKTLCFVDFVSG---------ECVAQMTGHSEAVTG 688 (1080)
T ss_pred --------------cccccCCCceEEEEEC---CCccEEEEeecCCceEEEEeccc---------hhhhhhcCcchheee
Confidence 2234577788888888 89999999999999999999998 778889999999999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.|.+ |-+.|++++.||.|.||.++
T Consensus 689 ~kF~n-DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 689 VKFLN-DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeecc-cchhheeecCCceEEEEECc
Confidence 99987 88899999999999999985
No 111
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=2.8e-26 Score=193.70 Aligned_cols=291 Identities=15% Similarity=0.188 Sum_probs=216.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-cCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
.+.+..++.-.+.|+.++|..|+...+++|+..|.+.+||++..+.+..+. .|.+.|....|.|....+++++.|..++
T Consensus 234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLK 313 (910)
T ss_pred CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCcee
Confidence 466777874469999999999977788999999999999999887766555 5777777777777777777777777666
Q ss_pred EEEccCCC------------------------------------------------------------------------
Q 018858 84 SFDVHMPA------------------------------------------------------------------------ 91 (349)
Q Consensus 84 iwd~~~~~------------------------------------------------------------------------ 91 (349)
+|-.+++.
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 66333110
Q ss_pred ------------------------------------cccce-------eeccCcccceEEEEEccCCCEEEEEcCCCcEE
Q 018858 92 ------------------------------------SWRPL-------ESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128 (349)
Q Consensus 92 ------------------------------------~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (349)
..+.+ ..++.....+++++.++.|++.+.|...|.|-
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID 473 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence 00000 00000124577888888899999999999999
Q ss_pred EEEcCCceEeceec--cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 129 IIDIRQHCLYKSLR--AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 129 i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
+|++++|-...++. ..|..+|++++... .++.+++++.+|.+
T Consensus 474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~------------------------------------~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDG------------------------------------TNRLLVSAGADGIL 517 (910)
T ss_pred EEEcccCeeecccccCccccCceeEEEecC------------------------------------CCceEEEccCcceE
Confidence 99999998888771 27899999999987 78899999999999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee---ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEE
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD---QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI 283 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~ 283 (349)
.+||..+...+.... ....+..+..+.....++..-..- ..+....+.++.+.+|...|+++.|| |||++|+
T Consensus 518 kfw~f~~k~l~~~l~--l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS---~DgrWli 592 (910)
T KOG1539|consen 518 KFWDFKKKVLKKSLR--LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS---PDGRWLI 592 (910)
T ss_pred EEEecCCcceeeeec--cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC---CCCcEEE
Confidence 999999865433332 234555666666655555311110 11112334667888999999999999 9999999
Q ss_pred EeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC-CeEEEee
Q 018858 284 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS-KVVKVYS 347 (349)
Q Consensus 284 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iw~ 347 (349)
+++.|++|++||+.++ .++ -......+.+++.++| +|++|||+..| .-|++|.
T Consensus 593 sasmD~tIr~wDlpt~---------~lI-D~~~vd~~~~sls~SP-ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTG---------TLI-DGLLVDSPCTSLSFSP-NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EeecCCcEEEEeccCc---------cee-eeEecCCcceeeEECC-CCCEEEEEEecCceEEEEE
Confidence 9999999999999997 333 3345677889999988 89999999877 7899995
No 112
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=3.4e-27 Score=182.12 Aligned_cols=254 Identities=15% Similarity=0.164 Sum_probs=193.9
Q ss_pred eCCceeeeEEEEecCC-CceEEEeCCCCcEEEEECCC----------------CcEEEEeecCCCCeEEEEEecCC-CEE
Q 018858 12 RGHKATATCCIASRDR-PGFVASSGEDGCICWFDLRS----------------KDVQLVTDVGNGPVTSLCFKSGN-EDI 73 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~-~~~l~t~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~l 73 (349)
-.|.+.|..+...+-+ ..+.++=+..|.++||++.. .+++.++.+|...=+.++|||-. ..|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4588888888887762 44566667889999999752 24577888899989999999932 237
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCc---eEeceeccccccce
Q 018858 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSIC 149 (349)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v 149 (349)
++|..-+.|++|...++.-..-...+.+|...|..++|+|.. ..|++|+.||+|+|||+|.+ .++.. + .|.+.|
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k-Ah~sDV 305 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K-AHNSDV 305 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e-ccCCce
Confidence 788778899999998864333334466789999999999965 78899999999999999976 23333 5 789999
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
..+.|+. +..+|++|+.||+++|||++.-
T Consensus 306 NVISWnr------------------------------------~~~lLasG~DdGt~~iwDLR~~--------------- 334 (440)
T KOG0302|consen 306 NVISWNR------------------------------------REPLLASGGDDGTLSIWDLRQF--------------- 334 (440)
T ss_pred eeEEccC------------------------------------CcceeeecCCCceEEEEEhhhc---------------
Confidence 9999988 5558999999999999999972
Q ss_pred eeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec-----
Q 018858 230 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT----- 304 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~----- 304 (349)
....++..++-|..+|++|.|+| .+...|+++|.|.+|.+||+.-......
T Consensus 335 ----------------------~~~~pVA~fk~Hk~pItsieW~p--~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a 390 (440)
T KOG0302|consen 335 ----------------------KSGQPVATFKYHKAPITSIEWHP--HEDSVIAASGEDNQITIWDLSVEADEEEIDQEA 390 (440)
T ss_pred ----------------------cCCCcceeEEeccCCeeEEEecc--ccCceEEeccCCCcEEEEEeeccCChhhhcccc
Confidence 12256778888999999999997 5677889999999999999975433110
Q ss_pred -----ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeE
Q 018858 305 -----SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 343 (349)
Q Consensus 305 -----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 343 (349)
.-+..+++...+ ...+..+.|++....+|++.+.||--
T Consensus 391 ~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 391 AEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred ccchhcCCceeEEEecc-hhHhhhheeccCCCCeEEEeccccee
Confidence 011123322222 34688899999777799999999843
No 113
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.9e-27 Score=176.46 Aligned_cols=261 Identities=16% Similarity=0.182 Sum_probs=186.0
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE------EEEeecCCCCeEEEEEecCCCEEEEEe-CCC
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------QLVTDVGNGPVTSLCFKSGNEDIIYVS-SGK 80 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 80 (349)
+..|++|.+.|++++|+.+ |++|+|++.|+.|++|++++-.. ...++ -...+.++|+||-+.++... ...
T Consensus 79 ~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCC
Confidence 4568999999999999998 99999999999999999875321 11111 23467889999988766555 456
Q ss_pred eEEEEEccCCCccc---ce------eeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeE
Q 018858 81 EVKSFDVHMPASWR---PL------ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSS 151 (349)
Q Consensus 81 ~i~iwd~~~~~~~~---~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 151 (349)
++++|.+...+... .. .....|...+..+-....+.+|++++.|..|.+|+++ |+.+..+. .....-+.
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~ 233 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYD 233 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec-cccccccc
Confidence 89999775422111 00 1112344456666677778999999999999999998 88888777 55556667
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCcccee
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (349)
.+.+| +|+++++++....|++|.+--+
T Consensus 234 aavSP------------------------------------~GRFia~~gFTpDVkVwE~~f~----------------- 260 (420)
T KOG2096|consen 234 AAVSP------------------------------------DGRFIAVSGFTPDVKVWEPIFT----------------- 260 (420)
T ss_pred eeeCC------------------------------------CCcEEEEecCCCCceEEEEEec-----------------
Confidence 78888 8999999999999999987532
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec-------
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT------- 304 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~------- 304 (349)
.+|.+ ........+.+|...|..++|+ ++...+++.+.||+.+|||++-......
T Consensus 261 ---kdG~f------------qev~rvf~LkGH~saV~~~aFs---n~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~ 322 (420)
T KOG2096|consen 261 ---KDGTF------------QEVKRVFSLKGHQSAVLAAAFS---NSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE 322 (420)
T ss_pred ---cCcch------------hhhhhhheeccchhheeeeeeC---CCcceeEEEecCCcEEEeeccceEecCCCchHhhc
Confidence 11110 1113456789999999999999 8999999999999999999864221100
Q ss_pred -----------------ccc-------------------ccee-eeccccccceEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 305 -----------------SIN-------------------NDLL-IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 305 -----------------~~~-------------------~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
.+. .+.. ..-..|...|.+++|.+ +|++++++++ ..+++.
T Consensus 323 g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcGd-r~vrv~ 399 (420)
T KOG2096|consen 323 GSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCGD-RYVRVI 399 (420)
T ss_pred CCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeecc-eeeeee
Confidence 000 0111 11124778899999988 8999998864 555554
No 114
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-26 Score=190.36 Aligned_cols=232 Identities=19% Similarity=0.249 Sum_probs=189.9
Q ss_pred EEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeecc
Q 018858 21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN 100 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 100 (349)
+.|+. .+.|+.|.. ..+++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+ .+..+.
T Consensus 183 ldWss--~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k---~~~~~~ 256 (484)
T KOG0305|consen 183 LDWSS--ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK---KTRTLR 256 (484)
T ss_pred hhccc--CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc---cccccc
Confidence 45664 356666653 579999999998766666568899999999999999999999999999998653 334444
Q ss_pred C-cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEece-eccccccceeEEEEccCCCCCCCCCCCCCCccccCCce
Q 018858 101 Y-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAF 178 (349)
Q Consensus 101 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (349)
. |...|.+++|+ +..+.+|+.++.|..+|++..+.... +. +|...|..++|++
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~---------------------- 311 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSP---------------------- 311 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECC----------------------
Confidence 4 78899999998 67899999999999999997765544 67 8999999999999
Q ss_pred eEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeee
Q 018858 179 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 258 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
++++||+|+.|+.+.|||.... .+..
T Consensus 312 --------------d~~~lASGgnDN~~~Iwd~~~~----------------------------------------~p~~ 337 (484)
T KOG0305|consen 312 --------------DGNQLASGGNDNVVFIWDGLSP----------------------------------------EPKF 337 (484)
T ss_pred --------------CCCeeccCCCccceEeccCCCc----------------------------------------cccE
Confidence 8999999999999999999653 5667
Q ss_pred eecCCCcceEEEEEeeecCCccEEEEee--CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEE
Q 018858 259 SVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV 336 (349)
Q Consensus 259 ~~~~h~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 336 (349)
.+..|.+.|..++|+|+ ....||+|+ .|+.|++||..++ ..+ ....-...|.++.|++...+++.+
T Consensus 338 ~~~~H~aAVKA~awcP~--q~~lLAsGGGs~D~~i~fwn~~~g---------~~i-~~vdtgsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPW--QSGLLATGGGSADRCIKFWNTNTG---------ARI-DSVDTGSQVCSLIWSKKYKELLST 405 (484)
T ss_pred EEeccceeeeEeeeCCC--ccCceEEcCCCcccEEEEEEcCCC---------cEe-cccccCCceeeEEEcCCCCEEEEe
Confidence 88899999999999984 556899876 7999999999987 333 334556789999999866555555
Q ss_pred ee-CCCeEEEeeCC
Q 018858 337 CD-TSKVVKVYSIS 349 (349)
Q Consensus 337 ~~-~dg~i~iw~~~ 349 (349)
-+ .++.|.||+.+
T Consensus 406 hG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 406 HGYSENQITLWKYP 419 (484)
T ss_pred cCCCCCcEEEEecc
Confidence 54 67899999864
No 115
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.8e-27 Score=185.18 Aligned_cols=246 Identities=16% Similarity=0.155 Sum_probs=198.1
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVK 83 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 83 (349)
....+.+.-.++.|.++.|-.| |++|+.|+..|.|+|||..+...+..+.+|..+|..+.|+|.++ .+++|+.|+.++
T Consensus 58 ~~~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 58 RSVRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred hhhhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 3445556667789999999998 99999999999999999777666788899999999999999655 567788889999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
+||+.+.. ....+.+|++.|.|.+|+|.. ..+++|+.||.|++||++.. ..+.++. |..+|..+.+.|
T Consensus 137 ~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~lp----- 206 (487)
T KOG0310|consen 137 YWDLSTAY---VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLALP----- 206 (487)
T ss_pred EEEcCCcE---EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEEcC-----
Confidence 99999753 345678899999999999965 58899999999999999966 6666776 899999999999
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.|..+++++. ..|++||+.++.........+...++++.+..++..|+
T Consensus 207 -------------------------------sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 207 -------------------------------SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred -------------------------------CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 7888888765 57999999976655555554677899999999998888
Q ss_pred EeeeeeecCc----eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 242 EMEILDQSGG----KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 242 ~~~~~~~~~~----~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
+ ++.|+... ...+.++.+. ..++|.+++.+ |+++.++.|-.||.+.+=+...
T Consensus 255 S-~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs---~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 255 S-GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVS---PDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred e-cccccceEEEEccceEEEEeee-cccceeeEEec---CCCceEEEecccceeeeehhhc
Confidence 4 44444322 2344444443 46799999999 8999999999999988775444
No 116
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.3e-26 Score=201.11 Aligned_cols=248 Identities=14% Similarity=0.142 Sum_probs=197.1
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC------------------CcEEEEeecCCCCeEEEEEe
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS------------------KDVQLVTDVGNGPVTSLCFK 67 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~ 67 (349)
+.+.+...|.+.|+|+.|+|| |++||+|+.|+.|.||.... .+.+..+.+|...|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPD-GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCC-CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 456777889999999999999 99999999999999999762 13567888999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc----
Q 018858 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---- 143 (349)
Q Consensus 68 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 143 (349)
|++.++++++.|++|.||+..+. ..+..+.+|...|..+.|.|-|+|||+-+.|++|++|++.+..+.+.+..
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~ 215 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE 215 (942)
T ss_pred CCccEEEEecccceEEEEccccc---eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh
Confidence 99999999999999999999875 56677788999999999999999999999999999999877655555441
Q ss_pred -ccccceeEEEEccCCCCCCCCCCC----------------CCCccccCCceeEEeecCcccccCCCC-----------c
Q 018858 144 -GHSSICSSVQFIPWKPWEGLPENN----------------GNAGQCYNPAFVHAIAIPDADMLDKTN-----------K 195 (349)
Q Consensus 144 -~~~~~v~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 195 (349)
.....+..+.|+|||.++.+...- ......-+...+..+.|+|-.|-.+.. .
T Consensus 216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~ 295 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC 295 (942)
T ss_pred CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceE
Confidence 123357789999999988543211 111112234577888998877755444 2
Q ss_pred EEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeee
Q 018858 196 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF 275 (349)
Q Consensus 196 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~ 275 (349)
.+|+|+.|+.|.||..... +++..++.+. ...|.++.|+
T Consensus 296 i~AvgSqDrSlSVW~T~~~-------------------------------------RPl~vi~~lf--~~SI~DmsWs-- 334 (942)
T KOG0973|consen 296 IAAVGSQDRSLSVWNTALP-------------------------------------RPLFVIHNLF--NKSIVDMSWS-- 334 (942)
T ss_pred EEEEecCCccEEEEecCCC-------------------------------------Cchhhhhhhh--cCceeeeeEc--
Confidence 7889999999999998652 1112223333 4579999999
Q ss_pred cCCccEEEEeeCCCeEEEEecCCC
Q 018858 276 GERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 276 ~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
|||..|+.+|.||+|.+..++..
T Consensus 335 -pdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 335 -PDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred -CCCCeEEEEecCCeEEEEEcchH
Confidence 99999999999999999998764
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.3e-26 Score=193.53 Aligned_cols=248 Identities=18% Similarity=0.238 Sum_probs=200.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
+|+..-+.++|.|+ |++|++++.||.|++|+.... +...++..+...|.+++.. +.+|++++.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 68888999999999 889999999999999997655 4444555477778877764 5589999999999999999876
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
....+..+ .-++++++++.+|+++|.|+.|-.|++.++.+......++ +|.++|.++.|+|
T Consensus 88 ~~~iL~Rf---tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p--------------- 148 (933)
T KOG1274|consen 88 EDTILARF---TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDP--------------- 148 (933)
T ss_pred ccceeeee---eccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcC---------------
Confidence 55555555 4679999999999999999999999999999888888999 9999999999999
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 251 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
++++||+.+.||.|++||+.++....++..-
T Consensus 149 ---------------------~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v---------------------------- 179 (933)
T KOG1274|consen 149 ---------------------KGNFLAVSSCDGKVQIWDLQDGILSKTLTGV---------------------------- 179 (933)
T ss_pred ---------------------CCCEEEEEecCceEEEEEcccchhhhhcccC----------------------------
Confidence 8999999999999999999976433322211
Q ss_pred eeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc--ccccceEEEEeec
Q 018858 252 KRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTP 328 (349)
Q Consensus 252 ~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~ 328 (349)
...... ....+..++|+ |++..++..+.|+.|++|+..+.+ ....+. .+...+..++|+|
T Consensus 180 -----~k~n~~~~s~i~~~~aW~---Pk~g~la~~~~d~~Vkvy~r~~we---------~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 180 -----DKDNEFILSRICTRLAWH---PKGGTLAVPPVDNTVKVYSRKGWE---------LQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred -----Cccccccccceeeeeeec---CCCCeEEeeccCCeEEEEccCCce---------eheeecccccccceEEEEEcC
Confidence 000000 13467788999 888888888889999999999984 222222 2444588999988
Q ss_pred CCCCcEEEeeCCCeEEEeeCC
Q 018858 329 TESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.|+|||+++.||.|.|||+.
T Consensus 243 -nG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 243 -NGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred -CCcEEeeeccCCcEEEEecc
Confidence 79999999999999999973
No 118
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=3.9e-26 Score=187.49 Aligned_cols=255 Identities=16% Similarity=0.164 Sum_probs=186.1
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEE--eecCCCCeEEEEEecC-CCEEEEEeCCCeEEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKS 84 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i 84 (349)
++.+..|.+.|..+.|-|. ...|++++.|.++++||++..+++.. +.+|...|.+++|.|. ...+++|+.||.|.|
T Consensus 93 lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred hcccccccceeEeeccCCC-ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 4566789999999999994 88999999999999999999888655 8899999999999995 456889999999999
Q ss_pred EEccCCC--------------------ccc----ceeeccCcccceEE---EEEccCCCEEEEEcC-CCcEEEEEcCCce
Q 018858 85 FDVHMPA--------------------SWR----PLESYNYNKEEINQ---IVCNPKSSFLACADD-GGDVKIIDIRQHC 136 (349)
Q Consensus 85 wd~~~~~--------------------~~~----~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~ 136 (349)
||++... ..+ .+....++...+.. +.+..|+..||+++. |+.|+|||++...
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 9986432 000 01111122233333 444567888998887 9999999999654
Q ss_pred Eeceecc-------cc---ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 137 LYKSLRA-------GH---SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 137 ~~~~~~~-------~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
....... .+ ...+.++.... .|.+|++.+.|+.|
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDs------------------------------------sGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDS------------------------------------SGTYLFASCTDNSI 295 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecC------------------------------------CCCeEEEEecCCcE
Confidence 3322110 11 11233333333 67888888889999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCc---ceEEEEEeeecCCccEEE
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA---AASCVAFSMFGERGKYLI 283 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~i~~~~~~~~~~~l~ 283 (349)
++|++.+.. ..++..+.++.. .+.. ..+ |++.+++
T Consensus 296 y~ynm~s~s--------------------------------------~sP~~~~sg~~~~sf~vks-~lS---pd~~~l~ 333 (720)
T KOG0321|consen 296 YFYNMRSLS--------------------------------------ISPVAEFSGKLNSSFYVKS-ELS---PDDCSLL 333 (720)
T ss_pred EEEeccccC--------------------------------------cCchhhccCcccceeeeee-ecC---CCCceEe
Confidence 999998621 122233333321 2222 235 8999999
Q ss_pred EeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 284 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 284 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+|+.|...++|.+.+.+ .....+.+|.-.|++++|.|..-.-+++|++|..++||++.
T Consensus 334 SgSsd~~ayiw~vs~~e--------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPE--------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ccCCCcceeeeeecCcc--------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 99999999999999975 44567789999999999999766679999999999999973
No 119
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.6e-26 Score=184.95 Aligned_cols=288 Identities=14% Similarity=0.152 Sum_probs=211.9
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCE--EEEEeCCCeEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED--IIYVSSGKEVKS 84 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~i 84 (349)
+-..++||++.|.|+...|. |..|++|+.||+++||.+.++.++.++. ..+.|.+++|+|.++. ||++. ...+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence 44567899999999999998 9999999999999999999999999888 4568999999997664 34333 333444
Q ss_pred EEccCCC---------------------------------c-ccceeeccCcccceEEEEEccCCCEEEEEcCC---CcE
Q 018858 85 FDVHMPA---------------------------------S-WRPLESYNYNKEEINQIVCNPKSSFLACADDG---GDV 127 (349)
Q Consensus 85 wd~~~~~---------------------------------~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i 127 (349)
.+..-|. . ..-+...-.|...|..+.|+..|.||++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 4322110 0 00011122355788999999999999987654 459
Q ss_pred EEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC------CCCc-----cccCCceeEEeecCcccccCCCCcE
Q 018858 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN------GNAG-----QCYNPAFVHAIAIPDADMLDKTNKI 196 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
.|+++...+...-|+ ...+.+.++.|+|...++....+. .... .......+.+++++| .|..
T Consensus 549 liHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp------~GDn 621 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP------NGDN 621 (733)
T ss_pred EEEecccccccCchh-hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC------CCCe
Confidence 999998776666665 567789999999976655322222 1111 112345788889988 8999
Q ss_pred EEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeec
Q 018858 197 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG 276 (349)
Q Consensus 197 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~ 276 (349)
|+.|+.|+.+..||+.-.. ++.+++.-|...+++++|+
T Consensus 622 li~gs~d~k~~WfDldlss---------------------------------------kPyk~lr~H~~avr~Va~H--- 659 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSS---------------------------------------KPYKTLRLHEKAVRSVAFH--- 659 (733)
T ss_pred EEEecCCCeeEEEEcccCc---------------------------------------chhHHhhhhhhhhhhhhhc---
Confidence 9999999999999998531 5677888899999999999
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc----eEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK----VNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+.-.++++|+.||++.|+.-.-........--..+..+.+|... |....|+|.. -+|++++.||+|++|.
T Consensus 660 ~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q-pWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 660 KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ-PWLFSAGADGTIRLFT 733 (733)
T ss_pred cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC-ceEEecCCCceEEeeC
Confidence 78889999999999999964432221111111345667777765 8888999954 4999999999999993
No 120
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=7.9e-26 Score=187.33 Aligned_cols=335 Identities=14% Similarity=0.079 Sum_probs=236.6
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCC--ceEEEeCCCCcEEEEECCCCc---------------------EEEE-------
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRP--GFVASSGEDGCICWFDLRSKD---------------------VQLV------- 53 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~--~~l~t~~~dg~i~vwd~~~~~---------------------~~~~------- 53 (349)
+...+..|.||.+.|.+++|...++ -+|++++.|..|+||.+.-+. ....
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3467889999999999999987533 478999999999999864221 1111
Q ss_pred ---eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc----ceeeccCcccceEEEEEccCCCEEEEEcCCCc
Q 018858 54 ---TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR----PLESYNYNKEEINQIVCNPKSSFLACADDGGD 126 (349)
Q Consensus 54 ---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (349)
+.+|..-|.++.|+|.+..|++++.|.++.+|...+..-+. .+....+.........|+|+++.+++-+..|.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 23799999999999999999999999999999876532111 12223333456788999999999999999999
Q ss_pred EEEEEcCCc---eEeceeccccccceeEEEEccCCCCCCC--CCCCCC---------CccccCCceeEEeecCcccccCC
Q 018858 127 VKIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEGL--PENNGN---------AGQCYNPAFVHAIAIPDADMLDK 192 (349)
Q Consensus 127 i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
.++|-.++. .....+. +|.+.|..++|.|.|.++.+ .|++.. .-..+...++|.-++..+.|+.
T Consensus 340 ~hlWkt~d~~~w~~~~~iS-GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn- 417 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVIS-GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN- 417 (764)
T ss_pred EEEEeccCccceeeccccc-cccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-
Confidence 999984332 2333445 89999999999999988743 444411 1122333455444444444432
Q ss_pred CCcEEEEEcCCCeEEEEEccCce-----------------e-------------eeec----------------------
Q 018858 193 TNKICVVAKGDGVVDVINIESEL-----------------N-------------ISRS---------------------- 220 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~-----------------~-------------~~~~---------------------- 220 (349)
....|++|..+..+|+|+....- . ....
T Consensus 418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence 25678888888999999874310 0 0000
Q ss_pred ----CC-------------------CCCCccceeeeeccccEEEEeeeeee--------cCceeeeeeeeecCCCcceEE
Q 018858 221 ----KS-------------------TTKPLKGSQSTSKVNIRDAEMEILDQ--------SGGKRLHLDYSVGGHTAAASC 269 (349)
Q Consensus 221 ----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~i~~ 269 (349)
.+ .+...+.+++.+|+|+.+|++-.... +....+.....+.+|.-.|+.
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR 577 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE
Confidence 00 01234567889999999986322111 111233445578899999999
Q ss_pred EEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 270 i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++|+ |||+||++.+.|+++.+|......... ........|..-|.+..|+| ++.+++|+|.|.+|++|..+
T Consensus 578 l~FS---pdg~~LLsvsRDRt~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 578 LAFS---PDGRYLLSVSRDRTVSLYEVQEDIKDE-----FRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred EEEC---CCCcEEEEeecCceEEeeeeecccchh-----hhhccccccceEEEEcccCc-ccceeEEecCCceEEEEecc
Confidence 9999 999999999999999999986542111 11233667999999999988 88899999999999999863
No 121
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.95 E-value=4.6e-26 Score=170.05 Aligned_cols=263 Identities=14% Similarity=0.151 Sum_probs=202.4
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCC-------CcEEEEECCCCc---------EEEEee-cCCCCeEEEEEecCC
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGED-------GCICWFDLRSKD---------VQLVTD-VGNGPVTSLCFKSGN 70 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~d-------g~i~vwd~~~~~---------~~~~~~-~~~~~v~~~~~~~~~ 70 (349)
.+.|..|.+.|+.++-+|.+..+|+|+..+ ..+.||.+.... ++..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 345677889999999999878888887653 246799986432 233343 344689999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcc-ccee--eccCcccceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCceEeceecccc
Q 018858 71 EDIIYVSSGKEVKSFDVHMPASW-RPLE--SYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGH 145 (349)
Q Consensus 71 ~~l~~~~~dg~i~iwd~~~~~~~-~~~~--~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 145 (349)
..+++-. |..|.+|++..+... ..+. .-..+....++-+|+| +++.+++. .|+++..||+++.++...+...|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhh
Confidence 9988777 888999999876442 1111 1122345678889998 67777765 46899999999988877777688
Q ss_pred ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCC
Q 018858 146 SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 225 (349)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 225 (349)
...+..+.|+|+ ...+|++++.||.|++||.++.+
T Consensus 214 gq~vrdlDfNpn-----------------------------------kq~~lvt~gDdgyvriWD~R~tk---------- 248 (370)
T KOG1007|consen 214 GQRVRDLDFNPN-----------------------------------KQHILVTCGDDGYVRIWDTRKTK---------- 248 (370)
T ss_pred cceeeeccCCCC-----------------------------------ceEEEEEcCCCccEEEEeccCCC----------
Confidence 889999999995 56788999999999999999742
Q ss_pred CccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec-
Q 018858 226 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT- 304 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~- 304 (349)
.++..+.+|...|.++.|+| ...+++++||.|..|.+|...+-...+.
T Consensus 249 -----------------------------~pv~el~~HsHWvW~VRfn~--~hdqLiLs~~SDs~V~Lsca~svSSE~qi 297 (370)
T KOG1007|consen 249 -----------------------------FPVQELPGHSHWVWAVRFNP--EHDQLILSGGSDSAVNLSCASSVSSEQQI 297 (370)
T ss_pred -----------------------------ccccccCCCceEEEEEEecC--ccceEEEecCCCceeEEEecccccccccc
Confidence 67788999999999999997 4567999999999999998765331111
Q ss_pred --------------c-----cccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 305 --------------S-----INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 305 --------------~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
. -....+..+..|.+.|++++|++.|+-.+++-+.||.+.|=++
T Consensus 298 ~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 298 EFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 0 0123445777899999999999999988999999999987554
No 122
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.5e-26 Score=171.27 Aligned_cols=248 Identities=15% Similarity=0.254 Sum_probs=184.6
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (349)
-.|+.|++. |.+||.|+.||.+.|||+.+...-..+.+|..+|++++||++|+.|++++.|..|.+||+..+...+.+.
T Consensus 26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 788999998 9999999999999999999988888899999999999999999999999999999999998775332221
Q ss_pred ec------cCcc-------------------------------------cceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 98 SY------NYNK-------------------------------------EEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 98 ~~------~~~~-------------------------------------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
-- +-|. ....+..|.+.|+++++|...|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 10 0000 0011223556677999999999999999999
Q ss_pred ceEeceeccccc-cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 135 HCLYKSLRAGHS-SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 135 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.+++..++ -.. ..|..+.|+. .|+.|+.-+.|..||.|+++.
T Consensus 185 ~e~vas~r-its~~~IK~I~~s~------------------------------------~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 185 LECVASFR-ITSVQAIKQIIVSR------------------------------------KGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred heeeeeee-echheeeeEEEEec------------------------------------cCcEEEEecCCceEEEEehhh
Confidence 88888887 333 5677777776 899999999999999999984
Q ss_pred ceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC--CCcceEEEEEeeecCCccEEEEee-CCCe
Q 018858 214 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG--HTAAASCVAFSMFGERGKYLISGG-NDKL 290 (349)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~i~~~~~~~~~~~l~s~~-~d~~ 290 (349)
-..... ....++.+.++. .+..-.++.|+ .+|.|+++++ .-..
T Consensus 228 i~~~~r-------------------------------~~e~e~~~K~qDvVNk~~Wk~ccfs---~dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 228 IDDEGR-------------------------------DGEVEPEHKLQDVVNKLQWKKCCFS---GDGEYVCAGSARAHA 273 (405)
T ss_pred hcccCc-------------------------------cCCcChhHHHHHHHhhhhhhheeec---CCccEEEecccccee
Confidence 100000 001122233332 12334677788 8999998876 4578
Q ss_pred EEEEecCCCcceecccccceeeeccccc-cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 291 VKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 291 i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++||.-..+ .+++.+.+.+ .....+.|+|-.. .+++. ..|.++||..
T Consensus 274 LYIWE~~~G---------sLVKILhG~kgE~l~DV~whp~rp-~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 274 LYIWEKSIG---------SLVKILHGTKGEELLDVNWHPVRP-IIASI-ASGVVYIWAV 321 (405)
T ss_pred EEEEecCCc---------ceeeeecCCchhheeeccccccee-eeeec-cCCceEEEEe
Confidence 999999998 7777777766 5677889988432 45554 7899999974
No 123
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=2.5e-26 Score=172.04 Aligned_cols=218 Identities=19% Similarity=0.270 Sum_probs=173.0
Q ss_pred eecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCccc------------ceeeccCcccceEEEEEcc-CCCEEE
Q 018858 54 TDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWR------------PLESYNYNKEEINQIVCNP-KSSFLA 119 (349)
Q Consensus 54 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~------------~~~~~~~~~~~v~~~~~~~-~~~~l~ 119 (349)
...|.+.|.++.+.+ .|+++++|+.||.|.+||++.....+ ....-.+|+-.|..+.|-| |...|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 345889999999977 78999999999999999998643111 0111245677899999999 557888
Q ss_pred EEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE
Q 018858 120 CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 199 (349)
Q Consensus 120 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (349)
+++-|..+++||..+-+..-.|+ .++.|++-+++| +++ ...++|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp------------------------------~a~---sHcLiA~ 163 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSP------------------------------MAM---SHCLIAA 163 (397)
T ss_pred cccccceEEEeecccceeeEEee--cCceeehhhcCh------------------------------hhh---cceEEEE
Confidence 99999999999999888877777 667788877777 111 4567888
Q ss_pred EcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCc
Q 018858 200 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 279 (349)
Q Consensus 200 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~ 279 (349)
|..+-.|++.|+.++ ...+++.+|.+.|.++.|+| ...
T Consensus 164 gtr~~~VrLCDi~SG----------------------------------------s~sH~LsGHr~~vlaV~Wsp--~~e 201 (397)
T KOG4283|consen 164 GTRDVQVRLCDIASG----------------------------------------SFSHTLSGHRDGVLAVEWSP--SSE 201 (397)
T ss_pred ecCCCcEEEEeccCC----------------------------------------cceeeeccccCceEEEEecc--Cce
Confidence 999999999999986 66788999999999999995 344
Q ss_pred cEEEEeeCCCeEEEEecCCCccee-c-----ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 280 KYLISGGNDKLVKVWDCSRFQGVQ-T-----SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 280 ~~l~s~~~d~~i~vwd~~~~~~~~-~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
-.|++|+.||.|++||++...... . ....+.++.-..|.+.++.+||.+ ++.++++++.|..+++|+++
T Consensus 202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNME 276 (397)
T ss_pred eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhccCccceEEeecc
Confidence 567899999999999998763211 1 122244455678999999999988 89999999999999999864
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.7e-26 Score=178.61 Aligned_cols=236 Identities=13% Similarity=0.119 Sum_probs=183.9
Q ss_pred eEEEeC-CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEE
Q 018858 30 FVASSG-EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (349)
Q Consensus 30 ~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (349)
+++++. ....|.+|.+...........-.++|.+++-+|+|.+++.|+..|.|++|.+.+|.. +..+.+|-..|+|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L---L~v~~aHYQ~ITc 128 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL---LNVLSAHYQSITC 128 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH---HHHHHhhccceeE
Confidence 444433 334678888765554332223457899999999999999998999999999998854 4555678899999
Q ss_pred EEEccCCCEEEEEcCCCcEEEEEcC---------CceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCcee
Q 018858 109 IVCNPKSSFLACADDGGDVKIIDIR---------QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFV 179 (349)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (349)
+.|+.|+.+|++|+.||.|.+|++. +.+++..+. .|.-+|+++...+.+
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg--------------------- 186 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGG--------------------- 186 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCC---------------------
Confidence 9999999999999999999999874 235666777 888889988877621
Q ss_pred EEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeee
Q 018858 180 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS 259 (349)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
....+++++.|.++++||+..+ .++.+
T Consensus 187 -------------~~~rl~TaS~D~t~k~wdlS~g----------------------------------------~LLlt 213 (476)
T KOG0646|consen 187 -------------TNARLYTASEDRTIKLWDLSLG----------------------------------------VLLLT 213 (476)
T ss_pred -------------ccceEEEecCCceEEEEEeccc----------------------------------------eeeEE
Confidence 3467999999999999999975 22223
Q ss_pred ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee-------cccccceeeecccccc--ceEEEEeecCC
Q 018858 260 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-------TSINNDLLIKNINLNK--KVNWLCTTPTE 330 (349)
Q Consensus 260 ~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~~~--~v~~~~~~~~~ 330 (349)
+. ....+.+++++ |-++.++.|+++|.|.+.++....... .......+..+.+|.+ .|++++++- |
T Consensus 214 i~-fp~si~av~lD---pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-D 288 (476)
T KOG0646|consen 214 IT-FPSSIKAVALD---PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-D 288 (476)
T ss_pred Ee-cCCcceeEEEc---ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-C
Confidence 22 24678999999 889999999999999999887644111 1122345567788988 999999976 9
Q ss_pred CCcEEEeeCCCeEEEeeC
Q 018858 331 SENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 331 ~~~l~~~~~dg~i~iw~~ 348 (349)
|.+|++|+.||+|+|||+
T Consensus 289 gtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ccEEEeeCCCCCEEEEec
Confidence 999999999999999996
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=1.7e-24 Score=173.40 Aligned_cols=316 Identities=12% Similarity=0.051 Sum_probs=222.5
Q ss_pred CCeeeeCCceeeeEEEEecCC-CceEEEe--CCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 7 KPRRLRGHKATATCCIASRDR-PGFVASS--GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~-~~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
.++.|......|.|++|++.+ +.++..- +.+..+.+||.+.+......+..++.|....|+|....++.....+.+.
T Consensus 146 TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~ 225 (626)
T KOG2106|consen 146 TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLY 225 (626)
T ss_pred eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEE
Confidence 344555667889999999854 4444443 4456789999998887777777888999999999666655555578899
Q ss_pred EEEccCCCcccceeeccCc-ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYN-KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
.|+++.+...+....+..+ +..|.|++|.++++ +++|..+|.|.||+..+.+..+... .|++.|.+++...+|..+.
T Consensus 226 Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 226 FWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred EEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee
Confidence 9999987665555544433 35799999999886 7889999999999998888877777 8999999999888764441
Q ss_pred --------CCCCC----------------------------------CCCcccc---------CCceeEEeecCcccccC
Q 018858 163 --------LPENN----------------------------------GNAGQCY---------NPAFVHAIAIPDADMLD 191 (349)
Q Consensus 163 --------~~~~~----------------------------------~~~~~~~---------~~~~~~~~~~~~~~~~~ 191 (349)
..+.+ ...+... +......++..|
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp----- 378 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP----- 378 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-----
Confidence 00000 0000000 112345566666
Q ss_pred CCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE---eeeeeecCceeeeeeeeecCCCcceE
Q 018858 192 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 192 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
+.+.+++++.|+.+++|+-. +..- ......+..++.|+|.| .+++ .|.|-.........+..-.. ..+++
T Consensus 379 -s~~q~~T~gqdk~v~lW~~~--k~~w--t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls 451 (626)
T KOG2106|consen 379 -SKNQLLTCGQDKHVRLWNDH--KLEW--TKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLS 451 (626)
T ss_pred -ChhheeeccCcceEEEccCC--ceeE--EEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceE
Confidence 78889999999999999922 2211 11223556788999999 5553 22222222222222222223 67899
Q ss_pred EEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 269 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++.|+ |+|.+||.|+.|+.|+||-+..... .....-.-+..+|+.+.|++ |+++|.+-+.|-.|-.|.
T Consensus 452 ~v~ys---p~G~~lAvgs~d~~iyiy~Vs~~g~-------~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 452 VVRYS---PDGAFLAVGSHDNHIYIYRVSANGR-------KYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEc---CCCCEEEEecCCCeEEEEEECCCCc-------EEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEc
Confidence 99999 9999999999999999999987642 22222223448999999988 899999999999999994
No 126
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.1e-26 Score=179.66 Aligned_cols=233 Identities=19% Similarity=0.234 Sum_probs=178.8
Q ss_pred CceEEEeCCCCcEEEEECCCCcE---EE------------------EeecCCCCeEEEEEecC-CCEEEEEeCCCeEEEE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDV---QL------------------VTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSF 85 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~---~~------------------~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw 85 (349)
|+++|.|..|..|.|||+.-... .. .-.+|+..|..++|+.. .+.||+||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 68999999999999999863211 11 12358888888988764 4568999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCce-EeceeccccccceeEEEEccCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|+.+++... .+..|...|.++.|+|.. .+|++|+.|++|.+.|+|... .-..++ ..+.|..++|.|.
T Consensus 272 D~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~------ 340 (463)
T KOG0270|consen 272 DVDTGKPKS---SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPH------ 340 (463)
T ss_pred EcCCCCcce---ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCC------
Confidence 999886544 444578999999999965 789999999999999999532 223343 5678999999985
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
....+++++.||+|+-+|+|+.
T Consensus 341 -----------------------------se~~f~~~tddG~v~~~D~R~~----------------------------- 362 (463)
T KOG0270|consen 341 -----------------------------SENSFFVSTDDGTVYYFDIRNP----------------------------- 362 (463)
T ss_pred -----------------------------CceeEEEecCCceEEeeecCCC-----------------------------
Confidence 5678889999999999999973
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
.+++.+++.|.+.|.+|.+++ ....++++++.|+.|++|++..... .......-.-+...|
T Consensus 363 ----------~~~vwt~~AHd~~ISgl~~n~--~~p~~l~t~s~d~~Vklw~~~~~~~-------~~v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 363 ----------GKPVWTLKAHDDEISGLSVNI--QTPGLLSTASTDKVVKLWKFDVDSP-------KSVKEHSFKLGRLHC 423 (463)
T ss_pred ----------CCceeEEEeccCCcceEEecC--CCCcceeeccccceEEEEeecCCCC-------cccccccccccceee
Confidence 167788999999999999986 3445899999999999999986532 111111111223556
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.++.|....+++.|+..+.++|||+
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cccCCCcceEEEecCccceEEEeec
Confidence 6777766668899999999999996
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.7e-26 Score=166.53 Aligned_cols=220 Identities=17% Similarity=0.184 Sum_probs=174.8
Q ss_pred CCCeeeeCCceeeeEEEEe-cCCCceEEEeCCCCcEEEEECCCCcE--EEEeecCCCCeEEEEEecC--CCEEEEEeCCC
Q 018858 6 AKPRRLRGHKATATCCIAS-RDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSG--NEDIIYVSSGK 80 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~-~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg 80 (349)
+++.+|.||+++|+.++|. |.-|.+||+++.||.+.||..+.++- ......|...|++++|.|. |-.|++++.||
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG 126 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG 126 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence 6788999999999999995 44489999999999999999887753 4556679999999999884 56789999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccC---C-----------CEEEEEcCCCcEEEEEcCCce--Eeceeccc
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK---S-----------SFLACADDGGDVKIIDIRQHC--LYKSLRAG 144 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~ 144 (349)
.|.|.+.+.......-+...+|.-.|++++|.|. | +.|++|+.|..|+||+..+++ .-..+. +
T Consensus 127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~ 205 (299)
T KOG1332|consen 127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-G 205 (299)
T ss_pred cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-h
Confidence 9999999865333444556778899999999986 4 569999999999999988653 334577 8
Q ss_pred cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC
Q 018858 145 HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 224 (349)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 224 (349)
|.+-|+.++|.|.-.. ...++++++.||++.||..+...
T Consensus 206 H~dwVRDVAwaP~~gl--------------------------------~~s~iAS~SqDg~viIwt~~~e~--------- 244 (299)
T KOG1332|consen 206 HKDWVRDVAWAPSVGL--------------------------------PKSTIASCSQDGTVIIWTKDEEY--------- 244 (299)
T ss_pred cchhhhhhhhccccCC--------------------------------CceeeEEecCCCcEEEEEecCcc---------
Confidence 9999999999994100 24679999999999999887421
Q ss_pred CCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
.. .....+......+..+.|+ ..|++|+.++.|+.|.+|.-..
T Consensus 245 ---------------------------e~-wk~tll~~f~~~~w~vSWS---~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 245 ---------------------------EP-WKKTLLEEFPDVVWRVSWS---LSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ---------------------------Cc-ccccccccCCcceEEEEEe---ccccEEEEecCCcEEEEEEeCC
Confidence 00 1111222345689999999 8999999999999999997554
No 128
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.6e-25 Score=166.97 Aligned_cols=237 Identities=11% Similarity=0.084 Sum_probs=165.6
Q ss_pred cCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 56 VGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 56 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
.....|.+++||| ...++++++.|++|++|+++....... +....|.++|.+++|+.+|..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 3567899999999 445566889999999999986322222 44556789999999999999999999999999999999
Q ss_pred ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 135 HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
++. .++. .|..+|.++.|-+. .....|++|+.|.+|++||.+..
T Consensus 104 ~Q~-~~v~-~Hd~pvkt~~wv~~----------------------------------~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 104 GQV-SQVA-AHDAPVKTCHWVPG----------------------------------MNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred CCe-eeee-ecccceeEEEEecC----------------------------------CCcceeEecccccceeecccCCC
Confidence 965 4455 69999999999872 13358999999999999999987
Q ss_pred eeeeecCCCCCCccc-----eeeeeccccEEEEeeeeeecCceeeeeeeeecC----CCcceEEEEEeeecCCccEEEEe
Q 018858 215 LNISRSKSTTKPLKG-----SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG----HTAAASCVAFSMFGERGKYLISG 285 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~i~~i~~~~~~~~~~~l~s~ 285 (349)
........+...... -+...-.++.|++.... .....++. -+-.++++++. .|..-.+.|
T Consensus 148 ~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~--------n~~te~k~~~SpLk~Q~R~va~f---~d~~~~alG 216 (347)
T KOG0647|consen 148 NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE--------NPPTEFKRIESPLKWQTRCVACF---QDKDGFALG 216 (347)
T ss_pred CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC--------CCcchhhhhcCcccceeeEEEEE---ecCCceEee
Confidence 666655444321110 01111122222210000 00111111 12357888888 677777999
Q ss_pred eCCCeEEEEecCCCcceecccccceeeecccc---------ccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 286 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINL---------NKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 286 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+-+|.+.|..+..+... .-..+.-| -..|++++|+|..| .|+|+|.||++.+||-
T Consensus 217 siEGrv~iq~id~~~~~-------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 217 SIEGRVAIQYIDDPNPK-------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDK 280 (347)
T ss_pred eecceEEEEecCCCCcc-------CceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecc
Confidence 99999999999886321 11122222 23688999999555 8999999999999983
No 129
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.1e-25 Score=180.52 Aligned_cols=258 Identities=13% Similarity=0.083 Sum_probs=183.6
Q ss_pred CCccCCCCeeeeC-CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE------------EeecCCCCeEEEEEe
Q 018858 1 MTDAEAKPRRLRG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL------------VTDVGNGPVTSLCFK 67 (349)
Q Consensus 1 m~~~~~~~~~l~~-h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~------------~~~~~~~~v~~~~~~ 67 (349)
|..++.-.+.|+. ....|.+++|++. +..|+..+.....+|+|-...+... ..++|...+++-+|+
T Consensus 199 Mdas~~~fr~l~P~E~h~i~sl~ys~T-g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~wh 277 (641)
T KOG0772|consen 199 MDASMRSFRQLQPCETHQINSLQYSVT-GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWH 277 (641)
T ss_pred ccccchhhhccCcccccccceeeecCC-CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccc
Confidence 4455555555542 4457999999998 6666666666789999966433322 235788999999999
Q ss_pred cCC-CEEEEEeCCCeEEEEEccCCCc-ccceeec--cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE--ecee
Q 018858 68 SGN-EDIIYVSSGKEVKSFDVHMPAS-WRPLESY--NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL--YKSL 141 (349)
Q Consensus 68 ~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~ 141 (349)
|.. +.+++++.||+++|||+...+. .+.+... .+..-.++..+|++++++||+|+.||.|.+|+..+... ...+
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v 357 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV 357 (641)
T ss_pred cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe
Confidence 955 4689999999999999986432 2223221 22334688999999999999999999999999864422 2222
Q ss_pred cccccc--ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee
Q 018858 142 RAGHSS--ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 219 (349)
Q Consensus 142 ~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 219 (349)
+..|.. .|+|+.|++ +|++|++-+.|+++++||++....+..
T Consensus 358 k~AH~~g~~Itsi~FS~------------------------------------dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSY------------------------------------DGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred eeccCCCCceeEEEecc------------------------------------ccchhhhccCCCceeeeeccccccchh
Confidence 226666 899999999 899999999999999999998665543
Q ss_pred cCC--CCCCccceeeeeccccEEEEeeeeee---------cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC
Q 018858 220 SKS--TTKPLKGSQSTSKVNIRDAEMEILDQ---------SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 288 (349)
Q Consensus 220 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d 288 (349)
... +.......++|||+.+.+++-.+... .....+..++.+.-....|..+.|+ |.-+.+..|+.|
T Consensus 402 ~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh---pkLNQi~~gsgd 478 (641)
T KOG0772|consen 402 VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH---PKLNQIFAGSGD 478 (641)
T ss_pred hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec---chhhheeeecCC
Confidence 332 33345567899999999986221111 1112334444444446678889999 787888888889
Q ss_pred CeEEEEecCC
Q 018858 289 KLVKVWDCSR 298 (349)
Q Consensus 289 ~~i~vwd~~~ 298 (349)
|+++||=-.+
T Consensus 479 G~~~vyYdp~ 488 (641)
T KOG0772|consen 479 GTAHVYYDPN 488 (641)
T ss_pred CceEEEECcc
Confidence 9999885444
No 130
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=5.1e-26 Score=175.66 Aligned_cols=211 Identities=17% Similarity=0.260 Sum_probs=167.9
Q ss_pred cCCCCeEEEEEecCCC--EEEEEeCCCeEEEEEccCC-------------CcccceeeccCcccceEEEEEccCC-CEEE
Q 018858 56 VGNGPVTSLCFKSGNE--DIIYVSSGKEVKSFDVHMP-------------ASWRPLESYNYNKEEINQIVCNPKS-SFLA 119 (349)
Q Consensus 56 ~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 119 (349)
.|.+.+..+.-++-++ +.++-+..|.|+||++... ...+++.++.+|...-+.++|+|-. ..++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 4667777777776554 4445567899999998531 2345667788888888999999933 4588
Q ss_pred EEcCCCcEEEEEcCCceE---eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcE
Q 018858 120 CADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI 196 (349)
Q Consensus 120 ~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
+|.--+.|++|...++.- ...+. +|...|..++|+|. ....
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSpt-----------------------------------E~~v 272 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPT-----------------------------------EDGV 272 (440)
T ss_pred cCccccceEeeeeccCceeecCcccc-ccccchhhhccCCc-----------------------------------cCce
Confidence 888888999999887532 12345 79999999999995 6789
Q ss_pred EEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeec
Q 018858 197 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG 276 (349)
Q Consensus 197 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~ 276 (349)
|++++.||.|+|||++.+.. ..++ ..+.|.+.|+.|.|+
T Consensus 273 faScS~DgsIrIWDiRs~~~-------------------------------------~~~~-~~kAh~sDVNVISWn--- 311 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPK-------------------------------------KAAV-STKAHNSDVNVISWN--- 311 (440)
T ss_pred EEeeecCceEEEEEecCCCc-------------------------------------ccee-EeeccCCceeeEEcc---
Confidence 99999999999999997421 0122 237899999999999
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+..+||+|+.||+++|||++..+.. .++..+..|..+|+++.|+|.+...|++++.|.+|.+|||+
T Consensus 312 r~~~lLasG~DdGt~~iwDLR~~~~~------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 312 RREPLLASGGDDGTLSIWDLRQFKSG------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CCcceeeecCCCceEEEEEhhhccCC------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 77779999999999999999986432 56778889999999999999888899999999999999985
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.7e-24 Score=175.59 Aligned_cols=280 Identities=15% Similarity=0.111 Sum_probs=217.7
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-EEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
-..+|+|++++.+ .+.||.+-.||.|.+|++...-. ...+.+ .+..|.+++|++ +..|++.+.+|.|.-||+.+.+
T Consensus 24 ~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCc
Confidence 4578999999998 78899999999999999987543 344554 357899999995 5568888889999999999864
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEec--eeccccccceeEEEEccCCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK--SLRAGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
. +..+....+.+++++.+|.+..++.|++||.++.++...++... .+. ...+.+.+++|+|
T Consensus 102 ~---~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~-rq~sRvLslsw~~------------- 164 (691)
T KOG2048|consen 102 Q---KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM-RQKSRVLSLSWNP------------- 164 (691)
T ss_pred e---eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc-cccceEEEEEecC-------------
Confidence 4 44444556899999999999999999999988888887776543 333 4568899999999
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec-------CCCCCCccceeeeeccccEEEE
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-------KSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
++..++.|+.||.|++||..++...... ......-+.++.+-.++..+..
T Consensus 165 -----------------------~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sg 221 (691)
T KOG2048|consen 165 -----------------------TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASG 221 (691)
T ss_pred -----------------------CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEe
Confidence 7888999999999999999988765511 1112334566777777777764
Q ss_pred --eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 243 --MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 243 --~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
.|...-+......++.....|.+.|.+++.+ +++.++++++.|+.|.-|...+..... ........|...
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~---~~~d~vfsaGvd~~ii~~~~~~~~~~w-----v~~~~r~~h~hd 293 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA---DNEDRVFSAGVDPKIIQYSLTTNKSEW-----VINSRRDLHAHD 293 (691)
T ss_pred cCCceEEEEcccCcchhhhhhhhhcceeEEEEc---CCCCeEEEccCCCceEEEEecCCccce-----eeeccccCCccc
Confidence 3444444555667778888899999999999 888999999999999999888764321 122334468889
Q ss_pred eEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 321 VNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
|.+++..+. .|++|+.|..+.+=
T Consensus 294 vrs~av~~~---~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 294 VRSMAVIEN---ALISGGRDFTLAIC 316 (691)
T ss_pred ceeeeeecc---eEEecceeeEEEEc
Confidence 999999763 89999999988763
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.3e-27 Score=198.63 Aligned_cols=222 Identities=19% Similarity=0.313 Sum_probs=194.3
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEE
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (349)
.+++....+-.+++||.+ .+-.|...|.++..-..++.+++|+.|..+.+|.+... ..+..+.+|..+|.+
T Consensus 5 ~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeS 75 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIES 75 (825)
T ss_pred cccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCC---chhheeeccCCccee
Confidence 344455555667788754 33457888888888778889999999999999998753 344457889999999
Q ss_pred EEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccc
Q 018858 109 IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDAD 188 (349)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (349)
+.|++...+|++|+.+|.|++||++..+.++++. +|...+..+.|+|
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P-------------------------------- 122 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVDFHP-------------------------------- 122 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceeeecc--------------------------------
Confidence 9999999999999999999999999999999999 9999999999999
Q ss_pred ccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 189 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 189 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
-+.+++.|+.|+.+.+||++.. .+.+.+.+|...+.
T Consensus 123 ----~~~~~a~gStdtd~~iwD~Rk~----------------------------------------Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 123 ----YGEFFASGSTDTDLKIWDIRKK----------------------------------------GCSHTYKSHTRVVD 158 (825)
T ss_pred ----ceEEeccccccccceehhhhcc----------------------------------------CceeeecCCcceeE
Confidence 7889999999999999999953 67788899999999
Q ss_pred EEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 269 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+.|+ |+|++++++++|..++|||...+ +++..+..|.+.+..+.++|. .-++++|+.|+++++||+
T Consensus 159 ~l~ls---P~Gr~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 159 VLRLS---PDGRWVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred EEeec---CCCceeeccCCcceeeeeccccc---------ccccccccccccccccccCch-hhhhccCCCCceeeeecc
Confidence 99999 99999999999999999999998 788899999999999999994 458999999999999998
Q ss_pred C
Q 018858 349 S 349 (349)
Q Consensus 349 ~ 349 (349)
+
T Consensus 226 e 226 (825)
T KOG0267|consen 226 E 226 (825)
T ss_pred c
Confidence 5
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=7.7e-24 Score=174.04 Aligned_cols=262 Identities=14% Similarity=0.131 Sum_probs=183.3
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEE-EEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
+.+++++.|+.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||..+++... .+..+ ..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~---~~~~~-~~~~ 76 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG---TLPSG-PDPE 76 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE---eccCC-CCcc
Confidence 578899999999999999999888887654 46789999999977 556778999999998764332 23222 3356
Q ss_pred EEEEccCCCEEEEE-cCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCc
Q 018858 108 QIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186 (349)
Q Consensus 108 ~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
.++|+|+++.++++ ..++.|++||+++.+.+..+. ....+.+++|+|
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~------------------------------ 124 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSP------------------------------ 124 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECC------------------------------
Confidence 78999999877654 568999999999888777665 334467889998
Q ss_pred ccccCCCCcEEEEEcCCC-eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec----Cceeeeeeeeec
Q 018858 187 ADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVG 261 (349)
Q Consensus 187 ~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 261 (349)
++.+++++..++ .+.+||.++.+....... ......++|+++++.+++.+..+.. .....+....+.
T Consensus 125 ------dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 125 ------DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV--DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred ------CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc--CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence 788888887765 567789887655443221 2345678999999988654322221 111222222222
Q ss_pred CC-----C--cceEEEEEeeecCCccEEEE-eeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCc
Q 018858 262 GH-----T--AAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 333 (349)
Q Consensus 262 ~h-----~--~~i~~i~~~~~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 333 (349)
.+ . .....+.|+ |++++++. .+.++.+.+||+.++ +..... .+...+.+++|+| ++++
T Consensus 197 ~~~~~~~~~~~~~~~i~~s---~dg~~~~~~~~~~~~i~v~d~~~~---------~~~~~~-~~~~~~~~~~~~~-~g~~ 262 (300)
T TIGR03866 197 FEIPGVHPEAVQPVGIKLT---KDGKTAFVALGPANRVAVVDAKTY---------EVLDYL-LVGQRVWQLAFTP-DEKY 262 (300)
T ss_pred ecccccccccCCccceEEC---CCCCEEEEEcCCCCeEEEEECCCC---------cEEEEE-EeCCCcceEEECC-CCCE
Confidence 11 1 123467888 89987544 455678999999876 333222 2345788999988 7878
Q ss_pred EEEe-eCCCeEEEeeCC
Q 018858 334 LVVC-DTSKVVKVYSIS 349 (349)
Q Consensus 334 l~~~-~~dg~i~iw~~~ 349 (349)
|+++ +.+|.|++||+.
T Consensus 263 l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 263 LLTTNGVSNDVSVIDVA 279 (300)
T ss_pred EEEEcCCCCeEEEEECC
Confidence 8876 569999999974
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=7.3e-24 Score=169.78 Aligned_cols=282 Identities=13% Similarity=0.114 Sum_probs=210.8
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC--cc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA--SW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~ 93 (349)
+.|.|++|.++ + -++||..+|.|.||+..+.+..+....|++.|.+++...+|.. ++|+.|+.|..||-.-.+ ..
T Consensus 247 k~Vl~v~F~en-g-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLEN-G-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred eEEEEEEEcCC-C-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccc
Confidence 67999999997 4 5899999999999999887776666699999999999999875 459999999999832110 00
Q ss_pred ---------c-----------------c---------eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe
Q 018858 94 ---------R-----------------P---------LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY 138 (349)
Q Consensus 94 ---------~-----------------~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 138 (349)
+ . ....++|......++.+|+..++++++.|+.+++|+ ..++.
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 0 0 001234556778889999999999999999999999 55555
Q ss_pred ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee
Q 018858 139 KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218 (349)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 218 (349)
.+.. ...++.|+.|+| .| .++.|+..|...+.|.++...+.
T Consensus 402 wt~~--~~d~~~~~~fhp------------------------------------sg-~va~Gt~~G~w~V~d~e~~~lv~ 442 (626)
T KOG2106|consen 402 WTKI--IEDPAECADFHP------------------------------------SG-VVAVGTATGRWFVLDTETQDLVT 442 (626)
T ss_pred EEEE--ecCceeEeeccC------------------------------------cc-eEEEeeccceEEEEecccceeEE
Confidence 5544 567889999999 67 89999999999999999854444
Q ss_pred ecCCCCCCccceeeeeccccEEEEeeeeeecCce-----eeeeeeee-cCCCcceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 219 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-----RLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
.... ..++..++|+|+|.++| .++.|..+.. ........ ..+..+|+.+.|+ +|++|+.+-+.|-.|-
T Consensus 443 ~~~d--~~~ls~v~ysp~G~~lA-vgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS---~Ds~~~~~~S~d~eiL 516 (626)
T KOG2106|consen 443 IHTD--NEQLSVVRYSPDGAFLA-VGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS---SDSQFLVSNSGDYEIL 516 (626)
T ss_pred EEec--CCceEEEEEcCCCCEEE-EecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec---CCCceEEeccCceEEE
Confidence 4333 78999999999999999 4554443221 11222222 2234799999999 8999999999999999
Q ss_pred EEecCCCcceec------------------------------------------------------ccccceeeeccccc
Q 018858 293 VWDCSRFQGVQT------------------------------------------------------SINNDLLIKNINLN 318 (349)
Q Consensus 293 vwd~~~~~~~~~------------------------------------------------------~~~~~~~~~~~~~~ 318 (349)
.|....-++... ...........+|.
T Consensus 517 yW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs 596 (626)
T KOG2106|consen 517 YWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHS 596 (626)
T ss_pred EEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeecccc
Confidence 994433222110 11223445567899
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..|++++|...+ ..+++.+.|.+|..|++
T Consensus 597 ~~vt~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 SHVTNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 999999998744 46777779999999987
No 135
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.1e-24 Score=155.12 Aligned_cols=211 Identities=17% Similarity=0.242 Sum_probs=164.0
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----------------------------------------
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK---------------------------------------- 48 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~---------------------------------------- 48 (349)
++-+.|++.|.|.+|+|. |+++++|+.|.+|++......
T Consensus 83 kr~khhkgsiyc~~ws~~-geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPC-GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeccccCccEEEEEecCc-cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 344679999999999998 899999999999888654321
Q ss_pred ------------cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeec-cC---cccceEEEEEc
Q 018858 49 ------------DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY-NY---NKEEINQIVCN 112 (349)
Q Consensus 49 ------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~---~~~~v~~~~~~ 112 (349)
+..+.+.+|.+-|.++ ++-++-++++|+.|.+|+.||++-+.++..+..- .. ....|..++..
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd 240 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD 240 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC
Confidence 1111223444555444 3345678899999999999999876555544331 11 12578999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCC
Q 018858 113 PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 192 (349)
Q Consensus 113 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
|.|++|++|-.|....+||++.+++++.+. .|...|.|+.|+|
T Consensus 241 psgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp------------------------------------ 283 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSP------------------------------------ 283 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCC------------------------------------
Confidence 999999999999999999999999999999 8999999999999
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 272 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~ 272 (349)
...++++++.|..|++-|+.... ....++.....|+..+..+.|
T Consensus 284 ~a~yllt~syd~~ikltdlqgdl------------------------------------a~el~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 284 GAHYLLTCSYDMKIKLTDLQGDL------------------------------------AHELPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred CceEEEEecccceEEEeecccch------------------------------------hhcCceEEEEeccCceEEEEe
Confidence 78899999999999999998531 011223344568888889999
Q ss_pred eeecCCccEEEEeeCCCeEEEEecC
Q 018858 273 SMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
+ |..--+++.+.|.++.+|-++
T Consensus 328 h---~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 H---PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred c---CccceeeeccCcceEEEeccC
Confidence 9 777778899999999999764
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.9e-24 Score=180.18 Aligned_cols=284 Identities=13% Similarity=0.101 Sum_probs=210.2
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcE---EEEeecCCCCeEEEEEecC-----------CCEEEEEeCCCeEEE
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDV---QLVTDVGNGPVTSLCFKSG-----------NEDIIYVSSGKEVKS 84 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~i 84 (349)
.++.|++. ...|.....|..|+|||+++-+. ...+-.|...|..+.--|. ...+.+++.|++|++
T Consensus 328 IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecCC-CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 45689988 68888889999999999987543 3445558887877765441 235889999999999
Q ss_pred EEccCCCcccc----------ee------------------------eccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 85 FDVHMPASWRP----------LE------------------------SYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 85 wd~~~~~~~~~----------~~------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
|++........ ++ ..-.....+.+++.+|++++||+|..-|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99975210000 00 000123468999999999999999999999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
++.+-+....+. .|+..|.|+.|+... -..++|++++.|.-|.+||
T Consensus 487 ~Lq~l~~~~~~e-AHesEilcLeyS~p~---------------------------------~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 487 DLQELEYTCFME-AHESEILCLEYSFPV---------------------------------LTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred Eehhhhhhhhee-cccceeEEEeecCch---------------------------------hhhHhhhhccCCceEEEEe
Confidence 999888877888 899999999998621 0357899999999999999
Q ss_pred ccCceeeeecCCCCCCccceeeeeccc--cEEEEeeeeeecCcee---------eeeeeeecCCCcceEEEEEeeecCCc
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVN--IRDAEMEILDQSGGKR---------LHLDYSVGGHTAAASCVAFSMFGERG 279 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~h~~~i~~i~~~~~~~~~ 279 (349)
...+-.+...-..+...|.++.|.-.| ...++.|. |..+..+ .....+..-....++.++.. |..
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGA-DksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vd---p~~ 608 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA-DKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVD---PTS 608 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccC-chhhheehhccccCceeccccccccccceEEEeeeC---CCc
Confidence 987766666666667889999988877 44443332 2222111 01111111124578999999 899
Q ss_pred cEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 280 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 280 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+++++++.|..|+||+++++++. +..+...+|.+....+...| .|.||++.+.|.++.++|.
T Consensus 609 k~v~t~cQDrnirif~i~sgKq~------k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 609 KLVVTVCQDRNIRIFDIESGKQV------KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ceEEEEecccceEEEecccccee------eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEe
Confidence 99999999999999999999543 33344456777888888888 7889999999999999985
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.5e-26 Score=198.86 Aligned_cols=247 Identities=19% Similarity=0.209 Sum_probs=198.3
Q ss_pred ceeeeEEEEecCCCc---eEEEeCCCCcEEEEECCC---C---cEEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEE
Q 018858 15 KATATCCIASRDRPG---FVASSGEDGCICWFDLRS---K---DVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKS 84 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~---~l~t~~~dg~i~vwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i 84 (349)
...-+.++|.+.+.. +++.|..||.|.+||... + ..+.+...|.+.|..+.|++... .||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345788999887333 489999999999999764 2 23566778999999999999655 8999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccc--cceeEEEEccCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHS--SICSSVQFIPWKPWE 161 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~ 161 (349)
||+...+...... -....+.|.+++|+..- +.|++++.+|.+.|||++..+.+-.+. .+. ..+..++|+|+
T Consensus 144 WDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-~~~~~~~~S~l~WhP~---- 217 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-DTPGRMHCSVLAWHPD---- 217 (1049)
T ss_pred eccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-cCCCccceeeeeeCCC----
Confidence 9998644322221 22235789999999754 678899999999999999888777776 333 34778999995
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC---CeEEEEEccCceeeeecCCCCCCccceeeeecccc
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
+...+++++.| -.|.+||+|...
T Consensus 218 -------------------------------~aTql~~As~dd~~PviqlWDlR~as----------------------- 243 (1049)
T KOG0307|consen 218 -------------------------------HATQLLVASGDDSAPVIQLWDLRFAS----------------------- 243 (1049)
T ss_pred -------------------------------CceeeeeecCCCCCceeEeecccccC-----------------------
Confidence 45667777655 379999998531
Q ss_pred EEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
.+.+.+++|...|.++.|++ .|..+|++++.|+.|.+|+.+++ +++..+....
T Consensus 244 ----------------sP~k~~~~H~~GilslsWc~--~D~~lllSsgkD~~ii~wN~~tg---------Evl~~~p~~~ 296 (1049)
T KOG0307|consen 244 ----------------SPLKILEGHQRGILSLSWCP--QDPRLLLSSGKDNRIICWNPNTG---------EVLGELPAQG 296 (1049)
T ss_pred ----------------CchhhhcccccceeeeccCC--CCchhhhcccCCCCeeEecCCCc---------eEeeecCCCC
Confidence 56677889999999999995 55689999999999999999998 6777777778
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.+..+.|+|.+...+++++.||.|-|+.+
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeee
Confidence 889999999999889999999999999986
No 138
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=175.43 Aligned_cols=240 Identities=17% Similarity=0.143 Sum_probs=194.6
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
+...+|.|-.++|+++.|.++ ++++++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|++|
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 467778888899999999998 8899999999999999999999999999999999999998877779999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|+....+.+.+.. ...+..+..+ ...+++|..|+.|++||.++..+..+.. . .+.|+++..++
T Consensus 289 Dl~k~~C~kt~l~----~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~-gg~vtSl~ls~--------- 351 (459)
T KOG0288|consen 289 DLQKAYCSKTVLP----GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP-L-GGRVTSLDLSM--------- 351 (459)
T ss_pred hhhhhheeccccc----cccccceEec--ceeeeecccccceEEEeccCCceeeEee-c-CcceeeEeecc---------
Confidence 9997544433322 2445566655 5578899999999999999999988887 3 45899999998
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC---CCCccceeeeeccccEEEE
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 242 (349)
++..+.+.+.|.++.++|+++......+... .......+.|||++.|++
T Consensus 352 ---------------------------~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva- 403 (459)
T KOG0288|consen 352 ---------------------------DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA- 403 (459)
T ss_pred ---------------------------CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee-
Confidence 7888999999999999999987665544322 234578899999999999
Q ss_pred eeeeeecC----ceeeeeeeeecCCCc--ceEEEEEeeecCCccEEEEeeCCCeEEEE
Q 018858 243 MEILDQSG----GKRLHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVW 294 (349)
Q Consensus 243 ~~~~~~~~----~~~~~~~~~~~~h~~--~i~~i~~~~~~~~~~~l~s~~~d~~i~vw 294 (349)
+|+.++.+ ....++.+.+..... .|++++|+ |.|..|++++.++.+.+|
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~---~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN---PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc---CCCchhhcccCCcceEec
Confidence 45544432 223444445544333 69999999 899999999999999999
No 139
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.94 E-value=3.1e-24 Score=167.39 Aligned_cols=284 Identities=15% Similarity=0.148 Sum_probs=199.8
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---------EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---------VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
..+|..+.|.++..+.++||+.|..|++|.++... ....+..|...|+++.|+|+|+.||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999855599999999999999876422 245667899999999999999999999999999999
Q ss_pred Ecc--------C-----CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEE
Q 018858 86 DVH--------M-----PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV 152 (349)
Q Consensus 86 d~~--------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 152 (349)
-.. + .+.......+.+|...+..++|+|++.++++++.|..+++||+..|+....+. .|...+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-cccccccee
Confidence 765 2 12233445567788999999999999999999999999999999999999998 999999999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec------------
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS------------ 220 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------ 220 (349)
+|.|- ++++++-+.|...+.+++...+.....
T Consensus 172 awDpl------------------------------------~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 172 AWDPL------------------------------------NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred ecchh------------------------------------hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 99994 444444444444444433322211100
Q ss_pred ----------CCCCCCccceeeeeccccEEEEee-eeeecCce------------eeeeeeeecCCCcceEEEEEeeec-
Q 018858 221 ----------KSTTKPLKGSQSTSKVNIRDAEME-ILDQSGGK------------RLHLDYSVGGHTAAASCVAFSMFG- 276 (349)
Q Consensus 221 ----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~~~~h~~~i~~i~~~~~~- 276 (349)
....+...+.++|+|+|..+++.. ........ ..++...+.+...+...+.++|..
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~ 295 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYY 295 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEE
Confidence 011134456789999999998722 11111110 012222333334455555555410
Q ss_pred --------------CCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCe
Q 018858 277 --------------ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV 342 (349)
Q Consensus 277 --------------~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 342 (349)
|-+-.++.++. +.|+|||.+... ++.....-|-..++.++|++ +|..|+..+.||.
T Consensus 296 elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~--------P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGy 365 (434)
T KOG1009|consen 296 ELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLE--------PLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGF 365 (434)
T ss_pred EeccccccccccccccceEEEEeec-ceEEEecccccc--------ceEEEeeeeeeeecceeecC-CCcEEEEeccCCc
Confidence 22234455554 679999999863 34444455888999999988 8999999999986
Q ss_pred EEE
Q 018858 343 VKV 345 (349)
Q Consensus 343 i~i 345 (349)
.-+
T Consensus 366 CS~ 368 (434)
T KOG1009|consen 366 CSL 368 (434)
T ss_pred eEE
Confidence 544
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=8.5e-25 Score=166.09 Aligned_cols=284 Identities=14% Similarity=0.140 Sum_probs=199.5
Q ss_pred CceeeeEEEEecC---CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCC-CEEEEEeCCCeEEEEEccC
Q 018858 14 HKATATCCIASRD---RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 14 h~~~i~~~~~~~~---~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 89 (349)
|...-..++|+-+ +..++|.||.-|.|+|.|+.+++....+.+|...|..+.+.|.. +++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6777788888754 24578999999999999999999999999999999999999954 6889999999999999999
Q ss_pred CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC--
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN-- 167 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-- 167 (349)
..++..+....+|.+.|.++.|++++.+|++++.|..|++|++...+....++ .++.|+|++.-...+...
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE-------~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE-------LSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh-------hhcccCCCCccCcCCccccc
Confidence 98888888899999999999999999999999999999999998654433333 113455532221111111
Q ss_pred --CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc-CceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 168 --GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE-SELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
.....-.+...+.++.| -|+++++-+-++.|..|..- -.+.......+
T Consensus 241 fp~fst~diHrnyVDCvrw--------~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~--------------------- 291 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYVDCVRW--------FGDFILSKSCENAIVCWKPGKLEESIHNVKPP--------------------- 291 (385)
T ss_pred cccccccccccchHHHHHH--------HhhheeecccCceEEEEecchhhhhhhccCCC---------------------
Confidence 00011222223333333 36788888888999999873 22111111111
Q ss_pred eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec--cccccceE
Q 018858 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN--INLNKKVN 322 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~ 322 (349)
......+..+.-....|.-+.|+ +.+-++.||.|.+.|.|++||++..+.. ...++ ..-...|.
T Consensus 292 ------es~~Ti~~~~~~~~c~iWfirf~-~d~~~~~la~gnq~g~v~vwdL~~~ep~-------~~ttl~~s~~~~tVR 357 (385)
T KOG1034|consen 292 ------ESATTILGEFDYPMCDIWFIRFA-FDPWQKMLALGNQSGKVYVWDLDNNEPP-------KCTTLTHSKSGSTVR 357 (385)
T ss_pred ------ccceeeeeEeccCccceEEEEEe-ecHHHHHHhhccCCCcEEEEECCCCCCc-------cCceEEeccccceee
Confidence 00012233344345566666655 2267889999999999999999987531 11111 11234577
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..+|+- |+.+|+..++|++|.-||.
T Consensus 358 Q~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 358 QTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 778865 8999999999999999984
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=2e-24 Score=170.83 Aligned_cols=259 Identities=18% Similarity=0.192 Sum_probs=188.6
Q ss_pred CCCeeeeCCceeeeEEEEecCCC-ceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEec-CCCEEEEEeCC
Q 018858 6 AKPRRLRGHKATATCCIASRDRP-GFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKS-GNEDIIYVSSG 79 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 79 (349)
......+.|.+.|++++|+|... +++++|..-|+|-+||+.+.+ .+..+..|..+|.++.|+| +...+++.+.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 34566678899999999999744 688899999999999995322 2566778999999999999 45679999999
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE-eceeccccccceeEEEEccCC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 158 (349)
|+|+.-|++.+.. ..+.........+..+.|+.+...++++..-|...+||++++.. ...+. .|...|..++++|.
T Consensus 257 GtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~- 333 (498)
T KOG4328|consen 257 GTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPV- 333 (498)
T ss_pred ceeeeeeecchhh-HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCC-
Confidence 9999999986532 22222222335677888888888888888888999999996544 55666 68889999999995
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecccc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
...+|++++.|++.+|||++.-.
T Consensus 334 ----------------------------------~p~~laT~s~D~T~kIWD~R~l~----------------------- 356 (498)
T KOG4328|consen 334 ----------------------------------CPWFLATASLDQTAKIWDLRQLR----------------------- 356 (498)
T ss_pred ----------------------------------CchheeecccCcceeeeehhhhc-----------------------
Confidence 56789999999999999999631
Q ss_pred EEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
....++.....|...|.+..|| |.+..|+|.+.|..|+|||..--... -.......|.
T Consensus 357 -------------~K~sp~lst~~HrrsV~sAyFS---Ps~gtl~TT~~D~~IRv~dss~~sa~------~~p~~~I~Hn 414 (498)
T KOG4328|consen 357 -------------GKASPFLSTLPHRRSVNSAYFS---PSGGTLLTTCQDNEIRVFDSSCISAK------DEPLGTIPHN 414 (498)
T ss_pred -------------CCCCcceecccccceeeeeEEc---CCCCceEeeccCCceEEeeccccccc------CCccceeecc
Confidence 0111122334699999999999 66666999999999999998511000 0111112222
Q ss_pred c------ceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 319 K------KVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 319 ~------~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
. .....+|.| +..+++++-.-..|-|+|
T Consensus 415 ~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CcccccccchhheeCC-CccEEEEeccCcceeEEc
Confidence 1 123346877 666788876666676665
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=171.40 Aligned_cols=209 Identities=18% Similarity=0.196 Sum_probs=167.6
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
.+|++.|.+++|+..-.+.||+|+.|.+|++||+.++++..++..|.+.|.++.|+| ...+|++|+.|++|.+.|.+..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 479999999999987788999999999999999999999999999999999999998 5678999999999999999953
Q ss_pred CcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
......-.+ .+.|..++|.|.. ..++++..||.|+-+|+|+. +++.+++ .|.++|.++++++.
T Consensus 320 ~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~----------- 384 (463)
T KOG0270|consen 320 SNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQ----------- 384 (463)
T ss_pred cccCceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCC-----------
Confidence 222222222 4779999999965 67888899999999999954 8999999 99999999999985
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
...++++++.|+.+++|++.....
T Consensus 385 ------------------------~p~~l~t~s~d~~Vklw~~~~~~~-------------------------------- 408 (463)
T KOG0270|consen 385 ------------------------TPGLLSTASTDKVVKLWKFDVDSP-------------------------------- 408 (463)
T ss_pred ------------------------CCcceeeccccceEEEEeecCCCC--------------------------------
Confidence 567899999999999999985310
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCc-cEEEEeeCCCeEEEEecCCCc
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~ 300 (349)
..++.-.-.-+...|.++. |+- -+++.|+..+.++|||+.+..
T Consensus 409 ------~~v~~~~~~~~rl~c~~~~---~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 409 ------KSVKEHSFKLGRLHCFALD---PDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ------cccccccccccceeecccC---CCcceEEEecCccceEEEeecccCh
Confidence 1111100012335666777 443 467788888889999998863
No 143
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.93 E-value=9.9e-25 Score=160.91 Aligned_cols=255 Identities=15% Similarity=0.136 Sum_probs=186.3
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-cCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+...|++|.+.|+|+.|..+ .+|++|..-|.+++|++.+.+....++ .+...|+.+...|+ ..+.+-+.|..+.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccc--hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 467788999999999999876 469999999999999999988887887 67889999998887 56888899999999
Q ss_pred EEccCCCccc------------------------ceeecc--------------------------CcccceEEEEEcc-
Q 018858 85 FDVHMPASWR------------------------PLESYN--------------------------YNKEEINQIVCNP- 113 (349)
Q Consensus 85 wd~~~~~~~~------------------------~~~~~~--------------------------~~~~~v~~~~~~~- 113 (349)
|++..+.... .+..+. ...+.+++..+..
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 9986421000 000000 0012334444322
Q ss_pred CC--CEEEEEcCCCcEEEEEcCCceEeceec---------cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEe
Q 018858 114 KS--SFLACADDGGDVKIIDIRQHCLYKSLR---------AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAI 182 (349)
Q Consensus 114 ~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (349)
.+ -++++|.++|.+.+||+.++..+..++ ..|..++.++.|.+
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-------------------------- 215 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-------------------------- 215 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech--------------------------
Confidence 22 245788899999999999874333332 15677788887776
Q ss_pred ecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC
Q 018858 183 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG 262 (349)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (349)
.-..=++|+.+..+..|++.-.. ..........-
T Consensus 216 ----------~~~rGisgga~dkl~~~Sl~~s~------------------------------------gslq~~~e~~l 249 (323)
T KOG0322|consen 216 ----------SCDRGISGGADDKLVMYSLNHST------------------------------------GSLQIRKEITL 249 (323)
T ss_pred ----------hhcCCcCCCccccceeeeecccc------------------------------------CcccccceEEe
Confidence 22223567777788889887420 00011111222
Q ss_pred CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCe
Q 018858 263 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV 342 (349)
Q Consensus 263 h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 342 (349)
....|..+.+- ||++.+||++.|+.||||+.++. ..+..+..|.+.|++++|+| +..++++++.|+.
T Consensus 250 knpGv~gvrIR---pD~KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~r 316 (323)
T KOG0322|consen 250 KNPGVSGVRIR---PDGKILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSP-DCELMAAASKDAR 316 (323)
T ss_pred cCCCccceEEc---cCCcEEeecccCCcEEEEEeccC---------CchhhhhhhhcceeEEEeCC-CCchhhhccCCce
Confidence 23457778888 89999999999999999999998 78888899999999999998 7779999999999
Q ss_pred EEEeeC
Q 018858 343 VKVYSI 348 (349)
Q Consensus 343 i~iw~~ 348 (349)
|-+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 144
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=164.00 Aligned_cols=151 Identities=18% Similarity=0.253 Sum_probs=125.0
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEec--CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccce
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (349)
..+|++-..|.|++||..+++.+..++++...+..++|.. ....+.+|+.||+|++||++.......+..-+....+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4588888899999999999999999999999999999976 56789999999999999999865444443322222466
Q ss_pred EEEEEccCCCEEEEEcC----CCcEEEEEcCCceE-eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEE
Q 018858 107 NQIVCNPKSSFLACADD----GGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHA 181 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (349)
.+++.+-.++.+++|.. +-.|.+||+|..+. +..+...|...|+++.|+|.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~------------------------ 176 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS------------------------ 176 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC------------------------
Confidence 77777767788888864 56799999997765 77776689999999999996
Q ss_pred eecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 182 IAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
+.++|++|+.||-|.+||++..
T Consensus 177 -----------~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 177 -----------DPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred -----------CCCeEEeecccceEEeeecCCC
Confidence 7899999999999999999864
No 145
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.8e-22 Score=165.95 Aligned_cols=266 Identities=13% Similarity=0.093 Sum_probs=182.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceE-EEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~ 81 (349)
+++.++.+..|.. +.+++|+|+ ++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.
T Consensus 20 t~~~~~~~~~~~~-~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~ 96 (300)
T TIGR03866 20 TLEVTRTFPVGQR-PRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNL 96 (300)
T ss_pred CCceEEEEECCCC-CCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCe
Confidence 4566777776544 678999998 6655 6778889999999999888777765443 5678999999987665 45899
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC-cEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
|++||+++.+. +..+.. ...+..++|+|++++++++..++ .+.+||.++++...... .......++|+|
T Consensus 97 l~~~d~~~~~~---~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~---- 166 (300)
T TIGR03866 97 VTVIDIETRKV---LAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTA---- 166 (300)
T ss_pred EEEEECCCCeE---EeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECC----
Confidence 99999987533 233321 23467899999999999888765 46778998887765544 233457788888
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE-cCCCeEEEEEccCceeeeecCCC------CCCccceeee
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKST------TKPLKGSQST 233 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~ 233 (349)
+++.|+++ ..++.|++||+++++........ .......+++
T Consensus 167 --------------------------------dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 167 --------------------------------DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred --------------------------------CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE
Confidence 77777544 46899999999987655433211 1122346889
Q ss_pred eccccEEEEeeeeee----cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEe-eCCCeEEEEecCCCcceeccccc
Q 018858 234 SKVNIRDAEMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVKVWDCSRFQGVQTSINN 308 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~ 308 (349)
+|+++++++....+. ......+....+. +...+.++.|+ |++++|+++ +.++.|++||+.++
T Consensus 215 s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~---~~g~~l~~~~~~~~~i~v~d~~~~--------- 281 (300)
T TIGR03866 215 TKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT---PDEKYLLTTNGVSNDVSVIDVAAL--------- 281 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC---CCCCEEEEEcCCCCeEEEEECCCC---------
Confidence 999998654321111 1111222222222 34468899999 899999876 46899999999997
Q ss_pred ceeeeccccccceEEEEeec
Q 018858 309 DLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~ 328 (349)
+.+..+. .....+.++++|
T Consensus 282 ~~~~~~~-~~~~~~~~~~~~ 300 (300)
T TIGR03866 282 KVIKSIK-VGRLPWGVVVRP 300 (300)
T ss_pred cEEEEEE-cccccceeEeCC
Confidence 4444443 235557777653
No 146
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=3.6e-24 Score=176.38 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=106.8
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE------EEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
.+..|.+|.+.|+.+.|+|-...+|+|++.|..++||.+..+-. -..+.+.+-.|.++.|+|..+-|+..+..|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 45667899999999999997678999999999999999974321 122333456788999999887788778899
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC-CceEece
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLYKS 140 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~ 140 (349)
.++|||+.++ +.+..+.+|.+.|.+..|+.||.++++++.|+.|+|||.+ .++.++.
T Consensus 151 ~v~i~D~stq---k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~ 208 (1012)
T KOG1445|consen 151 SVYITDISTQ---KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQT 208 (1012)
T ss_pred eEEEEEcccC---ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccc
Confidence 9999999976 4556677788999999999999999999999999999987 3344433
No 147
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.7e-24 Score=166.56 Aligned_cols=241 Identities=16% Similarity=0.177 Sum_probs=191.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+.++.++|+.|.+.|..+++.. ..+++++.|.+|+.|.++. .++.++.+ ...+..+.-+..++.++++|. .|.
T Consensus 98 qR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~ 170 (433)
T KOG0268|consen 98 QRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QID 170 (433)
T ss_pred hhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eee
Confidence 4567899999999999999985 5789999999999999875 45666653 456777777777778888885 499
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
|||.+.. .++..+.-....+.++.|+|.. ..|++++.|+.|.+||++++.+++.+. .......++|+|
T Consensus 171 IWD~~R~---~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnP------ 239 (433)
T KOG0268|consen 171 IWDEQRD---NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNP------ 239 (433)
T ss_pred ecccccC---CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCc------
Confidence 9998743 4455554455789999999976 667788899999999999999888776 456678899999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
..-.|++|++|..++.||++.-..+........+.+..+.|||.|+.++
T Consensus 240 ------------------------------eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv- 288 (433)
T KOG0268|consen 240 ------------------------------EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV- 288 (433)
T ss_pred ------------------------------cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc-
Confidence 6778999999999999999987766666666677888999999999998
Q ss_pred eeeeeecCceeeeeeeeecCC---------CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 243 MEILDQSGGKRLHLDYSVGGH---------TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h---------~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+|+.|.++.. ...-.+| ...|.++.|+ .|.+|+++||.|+.|++|.....+
T Consensus 289 sgsyDksIRI----f~~~~~~SRdiYhtkRMq~V~~Vk~S---~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 289 SGSYDKSIRI----FPVNHGHSRDIYHTKRMQHVFCVKYS---MDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred cccccceEEE----eecCCCcchhhhhHhhhheeeEEEEe---ccccEEEecCCCcceeeeecchhh
Confidence 5666655432 1111222 2478999999 899999999999999999876543
No 148
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=174.36 Aligned_cols=271 Identities=13% Similarity=0.108 Sum_probs=202.6
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
.|..++|-|| |..|+.+.. ..+.+||..+|.+++++++|...|.+++|+.+|+.+++|+.|..|.+|+-+-. ..+
T Consensus 14 ci~d~afkPD-GsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPD-GTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GIL 88 (1081)
T ss_pred chheeEECCC-CceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc---cee
Confidence 8999999999 555554442 47999999999999999999999999999999999999999999999986521 122
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCC
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
+ + .|.+.|.|+.|+|-.+.+++++-. ..-+|......+.+ .+ ....+.+++|..
T Consensus 89 k-Y-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k--ss~R~~~CsWtn-------------------- 142 (1081)
T KOG1538|consen 89 K-Y-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK--SSSRIICCSWTN-------------------- 142 (1081)
T ss_pred e-e-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh--hheeEEEeeecC--------------------
Confidence 2 2 377899999999999999988764 46788876544322 22 456788889988
Q ss_pred ceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee-ecCCCCCCccceeeeecccc----EEEEeeeeeecCc
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKVNI----RDAEMEILDQSGG 251 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 251 (349)
+|.+|+.|-.+|+|.+-+-...+... ...+...+++.+++|+|... .+.....|..+..
T Consensus 143 ----------------DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 143 ----------------DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred ----------------CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeE
Confidence 89999999999999998665444433 33455678899999998753 1222223322211
Q ss_pred e---eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec
Q 018858 252 K---RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 252 ~---~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
. .++.+..-+.-.-...|+.+. ++|.|++.|+.|+.+.+|--+. ..+.+.......|+.++..|
T Consensus 207 Fy~LsG~~Igk~r~L~FdP~CisYf---~NGEy~LiGGsdk~L~~fTR~G----------vrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 207 FYQLSGKQIGKDRALNFDPCCISYF---TNGEYILLGGSDKQLSLFTRDG----------VRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred EEEecceeecccccCCCCchhheec---cCCcEEEEccCCCceEEEeecC----------eEEeeccccceeEEEEEEcc
Confidence 1 111111111112245678888 8999999999999999997665 56666666788999999988
Q ss_pred CCCCcEEEeeCCCeEEEeeC
Q 018858 329 TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~iw~~ 348 (349)
++++++.|+.||+|..|++
T Consensus 274 -NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 274 -NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred -CCceEEEEEccCeeehhhh
Confidence 8889999999999998875
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=5.4e-24 Score=170.33 Aligned_cols=222 Identities=21% Similarity=0.308 Sum_probs=182.1
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (349)
-+|++.... ..++++|+..+.++|||++...+.+.+++|...|+++.++....|||+++..|.|.|..+.++.....+.
T Consensus 82 ~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 82 AFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred HHHHhhhhc-ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence 345555444 5799999999999999999777778889999999999999999999999999999999998865443333
Q ss_pred eccCcccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCC
Q 018858 98 SYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
.- ....|.-+.++|..+ +|.+++.+|.|.+||+....++..+...|..+...++|+|.
T Consensus 161 ~~--sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsps------------------- 219 (673)
T KOG4378|consen 161 ID--SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPS------------------- 219 (673)
T ss_pred cC--CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCC-------------------
Confidence 22 234567899999775 55688999999999999887777665589999999999994
Q ss_pred ceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeee
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL 256 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
+..+|++.+.|..|.+||.+... .
T Consensus 220 ----------------ne~l~vsVG~Dkki~~yD~~s~~----------------------------------------s 243 (673)
T KOG4378|consen 220 ----------------NEALLVSVGYDKKINIYDIRSQA----------------------------------------S 243 (673)
T ss_pred ----------------ccceEEEecccceEEEeeccccc----------------------------------------c
Confidence 67788999999999999999631 1
Q ss_pred eeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecC
Q 018858 257 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT 329 (349)
Q Consensus 257 ~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 329 (349)
...+. ...+...++|. ++|.+|+.|...|.|+.||++..+ .++.....|...|++++|-+.
T Consensus 244 ~~~l~-y~~Plstvaf~---~~G~~L~aG~s~G~~i~YD~R~~k--------~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 244 TDRLT-YSHPLSTVAFS---ECGTYLCAGNSKGELIAYDMRSTK--------APVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cceee-ecCCcceeeec---CCceEEEeecCCceEEEEecccCC--------CCceEeeecccceeEEEeeec
Confidence 12222 24578899999 999999999999999999999875 567788889999999999773
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.3e-21 Score=162.18 Aligned_cols=323 Identities=14% Similarity=0.094 Sum_probs=226.9
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE--EEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
+.++...++...+.|++++.+|. +..++.|+.||.++.++...++.. ..+....+.|.++.|+|++..|+.|+.||.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 45566677777889999999999 799999999998888888877664 334445689999999999999999999999
Q ss_pred EEEEEccCCCccccee----eccC-cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 82 VKSFDVHMPASWRPLE----SYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
|++||...+....... .+.. ..--|+++.+-. ...|++|...|.|.+||...+..++.++ .|...|.+++..+
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVAD 255 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEEcC
Confidence 9999999876555211 1111 223467777764 4579999999999999999999999999 9999999999998
Q ss_pred CCCCC--CCCCCC--------------CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce-----
Q 018858 157 WKPWE--GLPENN--------------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL----- 215 (349)
Q Consensus 157 ~~~~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----- 215 (349)
++-.. +..|.. ....+..+...+.++++.+ ..+++|+.|..+.+-..+...
T Consensus 256 ~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~--------~~l~sgG~d~~l~i~~s~~~~~~~h~ 327 (691)
T KOG2048|consen 256 NEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE--------NALISGGRDFTLAICSSREFKNMDHR 327 (691)
T ss_pred CCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec--------ceEEecceeeEEEEccccccCchhhh
Confidence 74332 111111 2333445667778888765 366777777766665443310
Q ss_pred ------------------e---------------------------eeecCCCCCCccceeeeeccccEEEEeeeeeec-
Q 018858 216 ------------------N---------------------------ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS- 249 (349)
Q Consensus 216 ------------------~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 249 (349)
. +..........+.+.+.+|+|++++...-.+..
T Consensus 328 ~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~i 407 (691)
T KOG2048|consen 328 QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKI 407 (691)
T ss_pred ccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEE
Confidence 0 000111223456678999999999862200000
Q ss_pred ------------------------------Cce-----------eeeee----------eee--cCCCcceEEEEEeeec
Q 018858 250 ------------------------------GGK-----------RLHLD----------YSV--GGHTAAASCVAFSMFG 276 (349)
Q Consensus 250 ------------------------------~~~-----------~~~~~----------~~~--~~h~~~i~~i~~~~~~ 276 (349)
+.. ..+.+ ..+ ++....|..+..+
T Consensus 408 y~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~S--- 484 (691)
T KOG2048|consen 408 YRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVS--- 484 (691)
T ss_pred EEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEc---
Confidence 000 00000 000 1123578899999
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++|+|+|+.+.+|.|.+|++++.+. -.........++.++++|.+-..|+.+..|+++.-||++
T Consensus 485 sdG~yiaa~~t~g~I~v~nl~~~~~---------~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 485 SDGNYIAAISTRGQIFVYNLETLES---------HLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred CCCCEEEEEeccceEEEEEccccee---------ecchhccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 9999999999999999999999632 112224457899999998777789999999999999873
No 151
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.9e-23 Score=163.26 Aligned_cols=248 Identities=11% Similarity=0.114 Sum_probs=185.1
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE--EeecCC-CCeEEEEEecCCCEEEEEeCCCe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL--VTDVGN-GPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
...++.+.--..+|.+.+|.|++...+++++....++.||+++.+... ...++. ..+.....++++++|+..+..|.
T Consensus 247 N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~ 326 (514)
T KOG2055|consen 247 NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH 326 (514)
T ss_pred ChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce
Confidence 346677776778999999999944489999999999999999877532 233333 45677888999999999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccccccee--EEEEccCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICS--SVQFIPWKP 159 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~~ 159 (349)
|.+....+++.+..++. .+.|..++|+.+++.|++.+.+|.|++||++...+++.+. ..+.|. +++.++
T Consensus 327 I~lLhakT~eli~s~Ki----eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~--D~G~v~gts~~~S~--- 397 (514)
T KOG2055|consen 327 IHLLHAKTKELITSFKI----EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV--DDGSVHGTSLCISL--- 397 (514)
T ss_pred EEeehhhhhhhhheeee----ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe--ecCccceeeeeecC---
Confidence 99998887654444433 4789999999999999999999999999999999998887 334443 344445
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee-----eeecCCCCCCccceeeee
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN-----ISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~ 234 (349)
++.+||+|+..|.|.|||.++... +..........|..+.|+
T Consensus 398 ---------------------------------ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 398 ---------------------------------NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred ---------------------------------CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 789999999999999999775321 112222334678899999
Q ss_pred ccccEEEEeeeeeecCce-----eeeeeeeec---CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 235 KVNIRDAEMEILDQSGGK-----RLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
+|++.+|.+........+ .......++ ..-+.|+|++|+ |.+.+||.|.++|.+.+|.+.
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS---P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS---PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec---CCCceEEeecCCCceeeEeec
Confidence 999999853322111110 111112222 234579999999 899999999999999999875
No 152
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.7e-22 Score=171.60 Aligned_cols=226 Identities=18% Similarity=0.262 Sum_probs=178.7
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
+....+.-|...|.+++.. +.+|++|+.+++|.+|...+++.-..+....-++..++++-+|+++|.||.|-.|++.
T Consensus 47 e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~ 123 (933)
T KOG1274|consen 47 EEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLL 123 (933)
T ss_pred cCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEE
Confidence 3444555577788887764 5589999999999999999887655566667889999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc------c-cccceeEEEEccCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA------G-HSSICSSVQFIPWK 158 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~-~~~~v~~~~~~~~~ 158 (349)
++.+.. ....+.+|+.+|.++.|+|++++||+.+.||.|++||+.++.+...+.. . ....+..++|+|
T Consensus 124 ~~~D~s---~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-- 198 (933)
T KOG1274|consen 124 NLDDSS---QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-- 198 (933)
T ss_pred eccccc---hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC--
Confidence 988653 3355677889999999999999999999999999999998877666541 0 123455677888
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecccc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
++..|++...|+.|++|+..+.
T Consensus 199 ----------------------------------k~g~la~~~~d~~Vkvy~r~~w------------------------ 220 (933)
T KOG1274|consen 199 ----------------------------------KGGTLAVPPVDNTVKVYSRKGW------------------------ 220 (933)
T ss_pred ----------------------------------CCCeEEeeccCCeEEEEccCCc------------------------
Confidence 7778888889999999998863
Q ss_pred EEEEeeeeeecCceeeeeeeeec--CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 239 RDAEMEILDQSGGKRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
.....+. .+...+..+.|+ |+|+|||+++.||.|.|||.++.+ . ..
T Consensus 221 ----------------e~~f~Lr~~~~ss~~~~~~ws---PnG~YiAAs~~~g~I~vWnv~t~~---------~----~~ 268 (933)
T KOG1274|consen 221 ----------------ELQFKLRDKLSSSKFSDLQWS---PNGKYIAASTLDGQILVWNVDTHE---------R----HE 268 (933)
T ss_pred ----------------eeheeecccccccceEEEEEc---CCCcEEeeeccCCcEEEEecccch---------h----cc
Confidence 2223332 244558999999 899999999999999999999842 1 23
Q ss_pred cccceEEEEeecC
Q 018858 317 LNKKVNWLCTTPT 329 (349)
Q Consensus 317 ~~~~v~~~~~~~~ 329 (349)
....|.+++|.|.
T Consensus 269 ~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 269 FKRAVCCEAWKPN 281 (933)
T ss_pred ccceeEEEecCCC
Confidence 4457888888773
No 153
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.4e-23 Score=154.87 Aligned_cols=226 Identities=14% Similarity=0.115 Sum_probs=152.9
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC--CcccceeeccCcccceEEEEEccCCCEEEEEc-CCCcE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP--ASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDV 127 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 127 (349)
+..+++|...|++++|+.+|++|++++.|+.|++|+++.- +.-+.+..-. .-+..+.+.|.||.+-++... ....+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 3467889999999999999999999999999999999852 1122222211 124678899999986665444 45569
Q ss_pred EEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
++|-+...+- ... +...+.+.. ..-...+...+.++-+.. ++.++++++.|..|.
T Consensus 158 ~vyk~~K~~d-G~~------~~~~v~~D~------------~~f~~kh~v~~i~iGiA~------~~k~imsas~dt~i~ 212 (420)
T KOG2096|consen 158 CVYKLVKKTD-GSG------SHHFVHIDN------------LEFERKHQVDIINIGIAG------NAKYIMSASLDTKIC 212 (420)
T ss_pred EEEEeeeccc-CCC------Ccccccccc------------cccchhcccceEEEeecC------CceEEEEecCCCcEE
Confidence 9987643221 111 111111110 000001111122222322 788999999999999
Q ss_pred EEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 208 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
+|+++. +.+..+......-+..+.+ |+|+++++++-
T Consensus 213 lw~lkG-----------------------------------------q~L~~idtnq~~n~~aavS---P~GRFia~~gF 248 (420)
T KOG2096|consen 213 LWDLKG-----------------------------------------QLLQSIDTNQSSNYDAAVS---PDGRFIAVSGF 248 (420)
T ss_pred EEecCC-----------------------------------------ceeeeeccccccccceeeC---CCCcEEEEecC
Confidence 999994 4444555445556677888 99999999998
Q ss_pred CCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
--.|+||.+--++.-. -.+......+.+|...|.+++|++ ++..+++++.||+++|||.
T Consensus 249 TpDVkVwE~~f~kdG~-fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGT-FQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred CCCceEEEEEeccCcc-hhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeec
Confidence 8899999974322110 011144567789999999999987 7889999999999999996
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=153.46 Aligned_cols=242 Identities=12% Similarity=0.102 Sum_probs=167.2
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEece
Q 018858 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS 140 (349)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 140 (349)
..++.|++.|.+||+|+.+|.|.|||+.+.. .-..+.+|..+|++++|+++|+.|++++.|..|.+||+..|.+++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 6789999999999999999999999999753 3455677889999999999999999999999999999999999999
Q ss_pred eccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec
Q 018858 141 LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 220 (349)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 220 (349)
++ .+++|....|+|. +.+..+++- .+..-.+.++..+......
T Consensus 103 ir--f~spv~~~q~hp~----------------------------------k~n~~va~~-~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 103 IR--FDSPVWGAQWHPR----------------------------------KRNKCVATI-MEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred EE--ccCccceeeeccc----------------------------------cCCeEEEEE-ecCCcEEEEecCCceeecc
Confidence 98 7899999999993 123333333 3333344444433222222
Q ss_pred CCC---CCCccceeeeeccccEEEEeeeeeec----CceeeeeeeeecCCC-cceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 221 KST---TKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 221 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~-~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
... ......+..|.+.|+++++ |...+. .....+++..++-.. ..|..+.++ ..|++|+.-+.|+.||
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIit-GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s---~~g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIIT-GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS---RKGRFLIINTSDRVIR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEE-ecCcceEEEEecchheeeeeeeechheeeeEEEEe---ccCcEEEEecCCceEE
Confidence 221 2222334568999999984 333222 222345555554433 678899999 8999999999999999
Q ss_pred EEecCCCcceecccccceeeeccc--cccceEEEEeecCCCCcEEEee-CCCeEEEee
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNIN--LNKKVNWLCTTPTESENLVVCD-TSKVVKVYS 347 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~ 347 (349)
.|+++.-..........+.+.+.. .+..-.+++|+. +|.|+++++ .-..++||.
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHALYIWE 278 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEeccccceeEEEEe
Confidence 999874322111111121122221 122445667766 898888886 557899996
No 155
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.5e-23 Score=168.15 Aligned_cols=212 Identities=18% Similarity=0.272 Sum_probs=169.3
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC--cccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 56 VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY--NKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
.|.+-|.++.++...+++++|+ .|.|+|||+.......++..+.. ....+....+.|||+.|++|++-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 3778888999999999999998 56799999986544445544433 24678999999999999999999999999998
Q ss_pred CceE--eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEc
Q 018858 134 QHCL--YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 211 (349)
Q Consensus 134 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 211 (349)
...+ ..++. ...-.+++++.+| |.+..++++.||.|.|||+
T Consensus 496 apTprikaelt-ssapaCyALa~sp------------------------------------DakvcFsccsdGnI~vwDL 538 (705)
T KOG0639|consen 496 APTPRIKAELT-SSAPACYALAISP------------------------------------DAKVCFSCCSDGNIAVWDL 538 (705)
T ss_pred CCCcchhhhcC-CcchhhhhhhcCC------------------------------------ccceeeeeccCCcEEEEEc
Confidence 6543 23333 3334567777777 7889999999999999999
Q ss_pred cCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeE
Q 018858 212 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291 (349)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i 291 (349)
.+. ..+..+++|...+.||.++ +||..|.||+-|++|
T Consensus 539 hnq----------------------------------------~~VrqfqGhtDGascIdis---~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 539 HNQ----------------------------------------TLVRQFQGHTDGASCIDIS---KDGTKLWTGGLDNTV 575 (705)
T ss_pred ccc----------------------------------------eeeecccCCCCCceeEEec---CCCceeecCCCccce
Confidence 974 6778899999999999999 899999999999999
Q ss_pred EEEecCCCcceecc-------------------------------cccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 292 KVWDCSRFQGVQTS-------------------------------INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 292 ~vwd~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
|-||++.+.+.+.- ...+....+..|...|.++.|.+ .|+++++.+.|
T Consensus 576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwfvStGkD 654 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKD 654 (705)
T ss_pred eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCceeeecCch
Confidence 99999987664320 01122234456888999999987 89999999999
Q ss_pred CeEEEeeCC
Q 018858 341 KVVKVYSIS 349 (349)
Q Consensus 341 g~i~iw~~~ 349 (349)
..+..|..+
T Consensus 655 nlLnawrtP 663 (705)
T KOG0639|consen 655 NLLNAWRTP 663 (705)
T ss_pred hhhhhccCc
Confidence 999999764
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1e-22 Score=169.11 Aligned_cols=259 Identities=15% Similarity=0.210 Sum_probs=201.4
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+...+.||.+.|+.++|+|. |.+|++.+.|.+-+++-.-..+ .+..-+.|.-.++|+++-+....+++|.....+
T Consensus 353 ~~~~iSGH~~~V~dv~W~ps-GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVl 431 (764)
T KOG1063|consen 353 QEPVISGHVDGVKDVDWDPS-GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVL 431 (764)
T ss_pred eccccccccccceeeeecCC-CCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceee
Confidence 34456799999999999999 8999999999999998754211 233445688889999998866678888888889
Q ss_pred EEEEccCC-------------------------------------------C----------------------------
Q 018858 83 KSFDVHMP-------------------------------------------A---------------------------- 91 (349)
Q Consensus 83 ~iwd~~~~-------------------------------------------~---------------------------- 91 (349)
++|+.... .
T Consensus 432 RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~ 511 (764)
T KOG1063|consen 432 RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ 511 (764)
T ss_pred eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence 99986210 0
Q ss_pred --cccceeeccCcccceEEEEEccCCCEEEEEcCCC-----cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 92 --SWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 92 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
....+..+.+|...|++++.+|+++++|+++... .|++|+..+....+.+. +|.-.|+.++|+|
T Consensus 512 ~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~l~FSp-------- 582 (764)
T KOG1063|consen 512 NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-GHSLTVTRLAFSP-------- 582 (764)
T ss_pred hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-ccceEEEEEEECC--------
Confidence 0011112336778899999999999999998743 49999999988888899 9999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
++++|++.+.|.++.+|.......
T Consensus 583 ----------------------------dg~~LLsvsRDRt~sl~~~~~~~~---------------------------- 606 (764)
T KOG1063|consen 583 ----------------------------DGRYLLSVSRDRTVSLYEVQEDIK---------------------------- 606 (764)
T ss_pred ----------------------------CCcEEEEeecCceEEeeeeecccc----------------------------
Confidence 899999999999999999865310
Q ss_pred eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee-eccccccceEE
Q 018858 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNW 323 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~ 323 (349)
...-....+.|..-|.++.|+ |++.+++|+|.|.+|+||........ .+.. ....+...|+.
T Consensus 607 --------~e~~fa~~k~HtRIIWdcsW~---pde~~FaTaSRDK~VkVW~~~~~~d~------~i~~~a~~~~~~aVTA 669 (764)
T KOG1063|consen 607 --------DEFRFACLKAHTRIIWDCSWS---PDEKYFATASRDKKVKVWEEPDLRDK------YISRFACLKFSLAVTA 669 (764)
T ss_pred --------hhhhhccccccceEEEEcccC---cccceeEEecCCceEEEEeccCchhh------hhhhhchhccCCceee
Confidence 001122367899999999999 89999999999999999999876211 1111 45578899999
Q ss_pred EEeecCCCC----cEEEeeCCCeEEEeeC
Q 018858 324 LCTTPTESE----NLVVCDTSKVVKVYSI 348 (349)
Q Consensus 324 ~~~~~~~~~----~l~~~~~dg~i~iw~~ 348 (349)
+++.|.+.. .++.|-..|.|.+|..
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEec
Confidence 999885432 5677779999999984
No 157
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=157.23 Aligned_cols=297 Identities=15% Similarity=0.092 Sum_probs=211.5
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC------CcEEEEee-cCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS------KDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
.+.+.+|.+.|.++.|+.+ +++|++|+.|..+++|+++. .+++.... .|...|.+++|...+..+++|+.++
T Consensus 49 qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3456789999999999998 89999999999999999753 35555444 3668999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce-Eece-eccccccceeEEEEccCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-LYKS-LRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~-~~~~~~~~v~~~~~~~~~ 158 (349)
+|...|+++.+.+.... .....+.|..+..+|..+.|++.+.+|.|.+||.+... .... +..........+.|+|.
T Consensus 128 ~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~- 205 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE- 205 (609)
T ss_pred eeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC-
Confidence 99999999864433322 22234689999999999999999999999999998554 2221 11134456777888884
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC------CCccceee
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT------KPLKGSQS 232 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~ 232 (349)
...+|++++..+-+.+||.+..+......... ....-...
T Consensus 206 ----------------------------------~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 206 ----------------------------------TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred ----------------------------------CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence 67889999999999999999866544322221 12234678
Q ss_pred eeccccEEEEeeeeeecCceee---e-eeeeecCC-------CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 233 TSKVNIRDAEMEILDQSGGKRL---H-LDYSVGGH-------TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~h-------~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
|+|+|..+.+.-....-..... . ++..+ .| ...+.++.|. +..-+++|+.+-.|++|.+.....
T Consensus 252 ~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~----~D~~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 252 WSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFI----DDYTVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred eCCCCCeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeee----cceeeeccCcccceEEEecCCCcc
Confidence 9999988774221111111110 0 11111 12 2356677776 556799999999999999875432
Q ss_pred ee------c--------ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 302 VQ------T--------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 302 ~~------~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.. . ......+..+.+|...++.+.|+| ...+|++.+-...+++|.
T Consensus 327 s~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 327 SYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccchhhheeccc
Confidence 11 0 011234567789999999999988 555788888999999996
No 158
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.91 E-value=1e-22 Score=152.45 Aligned_cols=246 Identities=15% Similarity=0.174 Sum_probs=183.6
Q ss_pred CCceeeeEEEEecCC----CceEEEeCCCCcEEEEECCC--CcE--EEEe-----ecCCCCeEEEEEec-CCCEEEEEeC
Q 018858 13 GHKATATCCIASRDR----PGFVASSGEDGCICWFDLRS--KDV--QLVT-----DVGNGPVTSLCFKS-GNEDIIYVSS 78 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~----~~~l~t~~~dg~i~vwd~~~--~~~--~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~ 78 (349)
.|.-+++.+.|.|+. .++|||++. .+++|.+.. .+. ...+ ..+..++++..|+. +.++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999972 246777653 799999873 221 1111 23567899999987 6788999999
Q ss_pred CCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceecc--ccccceeEEEEc
Q 018858 79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFI 155 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~ 155 (349)
|-+..|||++++........+-+|..+|..++|...+ +.||+.+.||.+++||+|..+--..+.+ ....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999874434455677899999999999866 7889999999999999996543222220 224567788888
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC-CCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
++ +.+++|+-.. ...|.+.|++..
T Consensus 252 kq-----------------------------------DpnymATf~~dS~~V~iLDiR~P-------------------- 276 (364)
T KOG0290|consen 252 KQ-----------------------------------DPNYMATFAMDSNKVVILDIRVP-------------------- 276 (364)
T ss_pred cC-----------------------------------CchHHhhhhcCCceEEEEEecCC--------------------
Confidence 85 7788887554 457999999963
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN 314 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 314 (349)
..++..+++|.+.|+.|+|.| .....++++|.|..+.+||+....... ...+++ ..
T Consensus 277 -------------------~tpva~L~~H~a~VNgIaWaP--hS~~hictaGDD~qaliWDl~q~~~~~--~~dPil-ay 332 (364)
T KOG0290|consen 277 -------------------CTPVARLRNHQASVNGIAWAP--HSSSHICTAGDDCQALIWDLQQMPREN--GEDPIL-AY 332 (364)
T ss_pred -------------------CcceehhhcCcccccceEecC--CCCceeeecCCcceEEEEecccccccC--CCCchh-hh
Confidence 266778999999999999997 556789999999999999998753210 000221 22
Q ss_pred cccccceEEEEeecCCCCcEEEeeCC
Q 018858 315 INLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 315 ~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
...+.|+.+.|+|..+.+++.+...
T Consensus 333 -~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 333 -TAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred -hccceeeeeeecccCCCEEEEEecC
Confidence 2567899999998888888887543
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=3.2e-22 Score=151.97 Aligned_cols=237 Identities=18% Similarity=0.184 Sum_probs=180.9
Q ss_pred ceeeeEEEEe-------cCCCceEEEeCCCCcEEEEECCCCcEEEEeec--CC---CCeEEEEEecCCCEEEEEeCCCeE
Q 018858 15 KATATCCIAS-------RDRPGFVASSGEDGCICWFDLRSKDVQLVTDV--GN---GPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 15 ~~~i~~~~~~-------~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
...|...+|- |+ ..++++.+.+.-|++||.-+|++..++.+ |. ....+++|+|||.+|++|- ...|
T Consensus 104 g~tvydy~wYs~M~s~qP~-t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krci 181 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPS-TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCI 181 (406)
T ss_pred CCEEEEEEeeeccccCCCc-cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceE
Confidence 3567777775 55 67899999999999999999998877654 32 3456899999999987655 7789
Q ss_pred EEEEcc-CCCcccceeec----cCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 83 KSFDVH-MPASWRPLESY----NYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 83 ~iwd~~-~~~~~~~~~~~----~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
++||+. .+..-....++ .+..+-+.+++|+|.. ..++.|+....+-||.-..+.++..+- +|.+.|+.++|.+
T Consensus 182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~e 260 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCE 260 (406)
T ss_pred EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEecc
Confidence 999994 34322222221 2335678999999955 689999998899898888888888888 9999999999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
+|+.|++|. .|-.|..||++...
T Consensus 261 ------------------------------------dGn~lfsGaRk~dkIl~WDiR~~~-------------------- 284 (406)
T KOG2919|consen 261 ------------------------------------DGNKLFSGARKDDKILCWDIRYSR-------------------- 284 (406)
T ss_pred ------------------------------------CcCeecccccCCCeEEEEeehhcc--------------------
Confidence 788888887 57899999999732
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCc-ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTA-AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN 314 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 314 (349)
.++..+..|.. .-..|.|. ..|++++|++|+.||.|++||++..- .....+
T Consensus 285 -------------------~pv~~L~rhv~~TNQRI~FD-ld~~~~~LasG~tdG~V~vwdlk~~g--------n~~sv~ 336 (406)
T KOG2919|consen 285 -------------------DPVYALERHVGDTNQRILFD-LDPKGEILASGDTDGSVRVWDLKDLG--------NEVSVT 336 (406)
T ss_pred -------------------chhhhhhhhccCccceEEEe-cCCCCceeeccCCCccEEEEecCCCC--------Cccccc
Confidence 45556666655 33344443 22899999999999999999999842 445566
Q ss_pred cccccceEEEEeecCCCCcEEEeeC
Q 018858 315 INLNKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 315 ~~~~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
..|...++.++++|. =.++++++.
T Consensus 337 ~~~sd~vNgvslnP~-mpilatssG 360 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPI-MPILATSSG 360 (406)
T ss_pred ccccccccceecCcc-cceeeeccC
Confidence 778999999999984 335666654
No 160
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.3e-21 Score=147.67 Aligned_cols=236 Identities=11% Similarity=0.059 Sum_probs=164.3
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
....|..+.|+|.++.|++++.||++++||+..... ...-.|..++.+.+|.+ ...+++|+.||.|+.+|+.+++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 356899999999999999999999999999986522 22223578999999986 5679999999999999999887
Q ss_pred EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 137 LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
..... .|..++.|+.+.+ ....+++|+.|++|++||.+....
T Consensus 87 ~~~ig--th~~~i~ci~~~~------------------------------------~~~~vIsgsWD~~ik~wD~R~~~~ 128 (323)
T KOG1036|consen 87 EDQIG--THDEGIRCIEYSY------------------------------------EVGCVISGSWDKTIKFWDPRNKVV 128 (323)
T ss_pred ceeec--cCCCceEEEEeec------------------------------------cCCeEEEcccCccEEEEecccccc
Confidence 65444 5999999999998 677899999999999999996322
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeee---cCceeeeeee--eecCCCcceEEEEEeeecCCccEEEEeeCCCeE
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ---SGGKRLHLDY--SVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i 291 (349)
....... ..+.+ .+-.|..|++...... ...+...... .-..-+..+.++++- |++.=.++++-||.|
T Consensus 129 ~~~~d~~--kkVy~--~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~---pn~eGy~~sSieGRV 201 (323)
T KOG1036|consen 129 VGTFDQG--KKVYC--MDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALV---PNGEGYVVSSIEGRV 201 (323)
T ss_pred ccccccC--ceEEE--EeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEe---cCCCceEEEeecceE
Confidence 2222221 23333 3334444543111111 1111111111 111234578999999 777778889999999
Q ss_pred EEEecCCCcceecccccceeeeccccc---------cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 292 KVWDCSRFQGVQTSINNDLLIKNINLN---------KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 292 ~vwd~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+=.++..+..+ .....+..|. .+|++++|+|. -+.++||+.||.|.+||+
T Consensus 202 avE~~d~s~~~~-----skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 202 AVEYFDDSEEAQ-----SKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIVNIWDL 261 (323)
T ss_pred EEEccCCchHHh-----hhceeEEeeecccCCceEEEEeceeEeccc-cceEEecCCCceEEEccC
Confidence 887666542222 1222333332 37999999995 458999999999999996
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.7e-22 Score=161.86 Aligned_cols=241 Identities=15% Similarity=0.139 Sum_probs=182.9
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cE--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSK--DV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
.+.++.|...+.-.+++.+.|..+++|.-... +. +....+. .-.|++......++++|+..+.|+|||++.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--- 110 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA--- 110 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH---
Confidence 38889998762223334456778899974322 11 1222222 333444444457999999999999999984
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
......+..|...|+++.++-...+||+++..|.|.|..+.++.....|.......++-+.|+|-
T Consensus 111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s--------------- 175 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS--------------- 175 (673)
T ss_pred HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc---------------
Confidence 34556677889999999999999999999999999999999988888887333556778889883
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCce
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK 252 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (349)
...+|.+++.+|.|.+||.....
T Consensus 176 --------------------kr~lL~~asd~G~VtlwDv~g~s------------------------------------- 198 (673)
T KOG4378|consen 176 --------------------KRFLLSIASDKGAVTLWDVQGMS------------------------------------- 198 (673)
T ss_pred --------------------cceeeEeeccCCeEEEEeccCCC-------------------------------------
Confidence 34567789999999999998631
Q ss_pred eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC
Q 018858 253 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 332 (349)
Q Consensus 253 ~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 332 (349)
....-...|..+-..|+|+| .+..+|++.+.|..|++||..+. ..........+...++|.+ +|.
T Consensus 199 --p~~~~~~~HsAP~~gicfsp--sne~l~vsVG~Dkki~~yD~~s~----------~s~~~l~y~~Plstvaf~~-~G~ 263 (673)
T KOG4378|consen 199 --PIFHASEAHSAPCRGICFSP--SNEALLVSVGYDKKINIYDIRSQ----------ASTDRLTYSHPLSTVAFSE-CGT 263 (673)
T ss_pred --cccchhhhccCCcCcceecC--CccceEEEecccceEEEeecccc----------cccceeeecCCcceeeecC-Cce
Confidence 22234457999999999997 67788999999999999999974 3333344566889999987 899
Q ss_pred cEEEeeCCCeEEEeeCC
Q 018858 333 NLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 333 ~l~~~~~dg~i~iw~~~ 349 (349)
+|++|...|.|..|||+
T Consensus 264 ~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMR 280 (673)
T ss_pred EEEeecCCceEEEEecc
Confidence 99999999999999985
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=149.08 Aligned_cols=242 Identities=19% Similarity=0.281 Sum_probs=177.3
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCC----c----E----EEEeec-CCCCeEEEEEe-------cCCCEEEEEe
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSK----D----V----QLVTDV-GNGPVTSLCFK-------SGNEDIIYVS 77 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~----~----~~~~~~-~~~~v~~~~~~-------~~~~~l~~~~ 77 (349)
...+.|+|| |.-|++-+.|..+.+|++... + . ..+++. ....|...+|- |+..++++.+
T Consensus 52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 456789999 888999999999999997521 1 0 111111 23567777775 6778899999
Q ss_pred CCCeEEEEEccCCCcccceeeccCccc---ceEEEEEccCCCEEEEEcCCCcEEEEEc-CCceEe---ceec---ccccc
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKE---EINQIVCNPKSSFLACADDGGDVKIIDI-RQHCLY---KSLR---AGHSS 147 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~---~~~~---~~~~~ 147 (349)
.+.-|++||.-+++.......+. |.+ ...+++|+|||.+|++|. ...|++||+ |.|... .++. .+..+
T Consensus 131 r~~PIh~wdaftG~lraSy~~yd-h~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYD-HQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeeccccccccchhhhh-hHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999999886554444332 222 456899999999999875 468999999 454321 1221 13356
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
-+.+++|+|. +...+++|+...++-||.-...
T Consensus 209 iisc~a~sP~-----------------------------------~~~~~a~gsY~q~~giy~~~~~------------- 240 (406)
T KOG2919|consen 209 IISCFAFSPM-----------------------------------DSKTLAVGSYGQRVGIYNDDGR------------- 240 (406)
T ss_pred eeeeeeccCC-----------------------------------CCcceeeecccceeeeEecCCC-------------
Confidence 6788888884 6678999999888888876653
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceeccc
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSI 306 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~ 306 (349)
.++..+.+|.+.|+.+.|. ++|+.|.+|+ .|-.|-.||++...
T Consensus 241 ---------------------------~pl~llggh~gGvThL~~~---edGn~lfsGaRk~dkIl~WDiR~~~------ 284 (406)
T KOG2919|consen 241 ---------------------------RPLQLLGGHGGGVTHLQWC---EDGNKLFSGARKDDKILCWDIRYSR------ 284 (406)
T ss_pred ---------------------------CceeeecccCCCeeeEEec---cCcCeecccccCCCeEEEEeehhcc------
Confidence 5666777999999999999 8999999998 57889999999864
Q ss_pred ccceeeecccccc-ceEEEE--eecCCCCcEEEeeCCCeEEEeeCC
Q 018858 307 NNDLLIKNINLNK-KVNWLC--TTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 307 ~~~~~~~~~~~~~-~v~~~~--~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.++..+..|.+ .-..|. ..| ++++|++|+.||.|++||+.
T Consensus 285 --~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 285 --DPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred --chhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecC
Confidence 44455555554 222333 334 78899999999999999973
No 163
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=4.2e-22 Score=164.08 Aligned_cols=271 Identities=13% Similarity=0.160 Sum_probs=174.2
Q ss_pred EEEec--CCCceEEEeCCCCcEEEEECCCCcE------EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc
Q 018858 21 CIASR--DRPGFVASSGEDGCICWFDLRSKDV------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 21 ~~~~~--~~~~~l~t~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
..|++ +...+|+.+.+||.|.++|.....- +.....|...|..+.|.|....|++++.|.+++.||+++.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 45554 3356799999999999999764322 355667999999999999777899999999999999997654
Q ss_pred ccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEE---ccCCCCCCCCCCCC
Q 018858 93 WRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF---IPWKPWEGLPENNG 168 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~ 168 (349)
... ..+.+|...|.+++|.|.. ..|++|+.||.|.|||++-... ..+. .....++...= .|.... ...
T Consensus 135 ~G~-~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~-d~~e-~~~~~~~~~~n~~ptpskp~-----~kr 206 (720)
T KOG0321|consen 135 VGG-RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV-DALE-EFDNRIYGRHNTAPTPSKPL-----KKR 206 (720)
T ss_pred ecc-eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch-hhHH-HHhhhhhccccCCCCCCchh-----hcc
Confidence 332 2467889999999999965 7889999999999999984431 1111 01111111100 010000 000
Q ss_pred CCccccCC----ceeEEeecCcccccCCCCcEEEEEcC-CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 169 NAGQCYNP----AFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 169 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
...-.... ..|..+.|. |...||+++. |+.|++||+++..........
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fk-------De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~-------------------- 259 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFK-------DESTLASAGAADSTIKVWDLRKNYTAYRQEPR-------------------- 259 (720)
T ss_pred ccccccccCceeeeeEEEEEe-------ccceeeeccCCCcceEEEeecccccccccCCC--------------------
Confidence 00000001 113333333 6778888886 999999999985432222111
Q ss_pred eeeeecCceeeeeeeeecCC---CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 244 EILDQSGGKRLHLDYSVGGH---TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h---~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
....+..| ...+.++..+ ..|.+|.+.+.|+.|++|++.+... .++..+.++...
T Consensus 260 ------------~~~~~~t~skrs~G~~nL~lD---ssGt~L~AsCtD~sIy~ynm~s~s~-------sP~~~~sg~~~~ 317 (720)
T KOG0321|consen 260 ------------GSDKYPTHSKRSVGQVNLILD---SSGTYLFASCTDNSIYFYNMRSLSI-------SPVAEFSGKLNS 317 (720)
T ss_pred ------------cccCccCcccceeeeEEEEec---CCCCeEEEEecCCcEEEEeccccCc-------CchhhccCcccc
Confidence 11222223 2356777777 6788888888899999999998643 333444443322
Q ss_pred eEEE--EeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 321 VNWL--CTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 321 v~~~--~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
-..+ ..+| ++.+|++|+.|...++|.++
T Consensus 318 sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 318 SFYVKSELSP-DDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred eeeeeeecCC-CCceEeccCCCcceeeeeec
Confidence 1111 2334 88899999999999999864
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=7.2e-23 Score=166.24 Aligned_cols=259 Identities=12% Similarity=0.114 Sum_probs=188.1
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC--------CcEEEEeecCCCCeEEEEEecCCCEEEEEeC
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS 78 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 78 (349)
...++..|.+.|+.++|.|. ...|++++.||+|.+|+++. -+++.++.+|.++|.|+++.++++++++|+.
T Consensus 286 ik~tl~s~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred eeeeeecchhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 33477889999999999998 78999999999999999932 2457899999999999999999999999999
Q ss_pred CCeEEEEEccCCCc-------ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc-cccccee
Q 018858 79 GKEVKSFDVHMPAS-------WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICS 150 (349)
Q Consensus 79 dg~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~ 150 (349)
||+|+.|++..... ......+.+|.+.++.+++++...+|++++.||++++|+.....+ ..+.. ...+...
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999997653211 122345778999999999999999999999999999999875554 22320 1222334
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccce
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 230 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (349)
.+.+-.. +-.+.++...-+.-.+++.+.......+...
T Consensus 444 svd~~ss-----------------------------------~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~------- 481 (577)
T KOG0642|consen 444 SVDRTSS-----------------------------------RPAHSLASFRFGYTSIDDMEVVSDLLIFESS------- 481 (577)
T ss_pred eEeeccc-----------------------------------hhHhhhhhcccccccchhhhhhhheeecccc-------
Confidence 4444331 1122222222222233333332111111100
Q ss_pred eeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccce
Q 018858 231 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
......-...++.+... |...+.+++.+|+.|+++|..++ .+
T Consensus 482 --------------------------~~~~~~~~~~in~vVs~---~~~~~~~~~hed~~Ir~~dn~~~---------~~ 523 (577)
T KOG0642|consen 482 --------------------------ASPGPRRYPQINKVVSH---PTADITFTAHEDRSIRFFDNKTG---------KI 523 (577)
T ss_pred --------------------------CCCcccccCccceEEec---CCCCeeEecccCCceeccccccc---------cc
Confidence 00000112356777777 88899999999999999999998 78
Q ss_pred eeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 311 LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.....|...++++++.| +|-+|++++.||.+++|++
T Consensus 524 l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 524 LHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred chheeeccceecceeecC-CCceEEeecCCceeehhhc
Confidence 888899999999999988 6779999999999999986
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=2.7e-22 Score=158.92 Aligned_cols=222 Identities=16% Similarity=0.242 Sum_probs=166.5
Q ss_pred ECCCCcEEEEeecCCCCeEEEEEecCCC--EEEEEeCCCeEEEEEccCC-CcccceeeccCcccceEEEEEccCC-CEEE
Q 018858 44 DLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIYVSSGKEVKSFDVHMP-ASWRPLESYNYNKEEINQIVCNPKS-SFLA 119 (349)
Q Consensus 44 d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 119 (349)
|+.+.......+.+.++|++++|+|..+ .+|+|...|.|-+||+.+. +....+..+..|..+|.++.|+|.. ..++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 3334444556677889999999999654 6788888999999999632 2233445566788999999999965 7899
Q ss_pred EEcCCCcEEEEEcCCceEeceecc-ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE
Q 018858 120 CADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 198 (349)
Q Consensus 120 ~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (349)
+.+.||+|++-|++....-..+.. .....+..+.|+. +...++
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~------------------------------------e~~~vl 295 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA------------------------------------ESRSVL 295 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccC------------------------------------CCccEE
Confidence 999999999999986543222220 2344556666666 556666
Q ss_pred EEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCC
Q 018858 199 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 278 (349)
Q Consensus 199 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 278 (349)
.+..=|.+.+||++.+. .....+.-|...|..++++| -.
T Consensus 296 ~~~~~G~f~~iD~R~~~---------------------------------------s~~~~~~lh~kKI~sv~~NP--~~ 334 (498)
T KOG4328|consen 296 FGDNVGNFNVIDLRTDG---------------------------------------SEYENLRLHKKKITSVALNP--VC 334 (498)
T ss_pred EeecccceEEEEeecCC---------------------------------------ccchhhhhhhcccceeecCC--CC
Confidence 77766799999999741 22345566888999999997 45
Q ss_pred ccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 279 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 279 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..+|+|+|.|++++|||++...... .++.....|...|.+..|+|.++. |+|.+.|..|+|||.
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDS 398 (498)
T ss_pred chheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeec
Confidence 5789999999999999998753221 123456689999999999997665 999999999999985
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.5e-22 Score=144.26 Aligned_cols=243 Identities=16% Similarity=0.207 Sum_probs=175.1
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCC---------C-cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRS---------K-DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
...|.+-+++|. +++|+.|..+|.|.+..+.+ + ..+...++|.++++.++|. .++|++|+ ||.|+-
T Consensus 10 ~~tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 10 YNTVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEE
Confidence 456777789998 89999999999999998753 2 2355668999999999998 45677777 699999
Q ss_pred EEccCCCc----ccceee-ccCc-----ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEE
Q 018858 85 FDVHMPAS----WRPLES-YNYN-----KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 85 wd~~~~~~----~~~~~~-~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
|..+.... .+.... .+.+ -..|+++-..|..+-++.++.|+.++.||+++|+..++++ +|.+.+.++.-
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeee
Confidence 98764321 111100 0111 2357889999988878888899999999999999999999 99999999987
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
.. ....+++|++||++|+||.++.++.......
T Consensus 165 R~------------------------------------~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y----------- 197 (325)
T KOG0649|consen 165 RN------------------------------------ANGQILSGAEDGTVRVWDTKTQKHVSMIEPY----------- 197 (325)
T ss_pred cc------------------------------------cCcceeecCCCccEEEEeccccceeEEeccc-----------
Confidence 55 4567889999999999999998766555433
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeecCCC-cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
+....++.|. ..|-+++. +..+|++|+. ..+.+|.+++.+.. .
T Consensus 198 --------------------k~~~~lRp~~g~wigala~-----~edWlvCGgG-p~lslwhLrsse~t----------~ 241 (325)
T KOG0649|consen 198 --------------------KNPNLLRPDWGKWIGALAV-----NEDWLVCGGG-PKLSLWHLRSSEST----------C 241 (325)
T ss_pred --------------------cChhhcCcccCceeEEEec-----cCceEEecCC-CceeEEeccCCCce----------E
Confidence 1112233343 35777775 4568888774 67999999986431 2
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
......++..+.|.. +.+++++..+.|.-|.+
T Consensus 242 vfpipa~v~~v~F~~---d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 242 VFPIPARVHLVDFVD---DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred EEecccceeEeeeec---ceEEEeccccceeeeee
Confidence 233445566666733 36777776666766654
No 167
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3e-21 Score=145.71 Aligned_cols=219 Identities=16% Similarity=0.229 Sum_probs=163.4
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC-CcccceeeccCcccceEEEEEcc--CCCEEEEEcCCCcEEEEE
Q 018858 55 DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIID 131 (349)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d 131 (349)
.+|..-|.++.|.+.|+++|+|+.|++|+|||.+.. .........+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 357788999999999999999999999999997543 23445566788999999999965 479999999999999997
Q ss_pred cC---------CceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC
Q 018858 132 IR---------QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 202 (349)
Q Consensus 132 ~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (349)
-. ......++. .....|+.+.|.|. .-|-.|++++.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~----------------------------------hlGLklA~~~a 134 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPK----------------------------------HLGLKLAAASA 134 (361)
T ss_pred ecccccccccceeEEEEEee-cCCcceeEEEecch----------------------------------hcceEEEEecc
Confidence 52 112334455 56678889999882 14788999999
Q ss_pred CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee-------cCCCcceEEEEEeee
Q 018858 203 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV-------GGHTAAASCVAFSMF 275 (349)
Q Consensus 203 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~i~~i~~~~~ 275 (349)
||.+|||+........ .+.+...+ ..+..+-.|+.|+|.
T Consensus 135 DG~lRIYEA~dp~nLs----------------------------------~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~s 180 (361)
T KOG2445|consen 135 DGILRIYEAPDPMNLS----------------------------------QWTLQHEIQNVIDPPGKNKQPCFCVSWNPS 180 (361)
T ss_pred CcEEEEEecCCccccc----------------------------------cchhhhhhhhccCCcccccCcceEEeeccc
Confidence 9999999987531111 11222222 235567789999853
Q ss_pred cCCccEEEEeeCC-----CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC---cEEEeeCCCeEEEee
Q 018858 276 GERGKYLISGGND-----KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE---NLVVCDTSKVVKVYS 347 (349)
Q Consensus 276 ~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~dg~i~iw~ 347 (349)
.-...+||.|+.+ +.++||......... ..+..+.+|..+|+.++|.|.-|+ .|++++.|| |+||+
T Consensus 181 r~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw-----~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~ 254 (361)
T KOG2445|consen 181 RMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW-----LKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFK 254 (361)
T ss_pred cccCceEEEEcccCCccccceEEEEecCCccee-----eeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEE
Confidence 3345688888765 589999887754222 344566699999999999996654 699999999 99998
Q ss_pred C
Q 018858 348 I 348 (349)
Q Consensus 348 ~ 348 (349)
+
T Consensus 255 v 255 (361)
T KOG2445|consen 255 V 255 (361)
T ss_pred E
Confidence 6
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=1.2e-21 Score=152.66 Aligned_cols=209 Identities=11% Similarity=0.097 Sum_probs=161.0
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-------cEEEEeecCCCCeEEEEEecC-CCEEEEEeCCCe
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKE 81 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 81 (349)
.+.||+++|..++|+|.+...+|+|+.|.+|.||++..+ +++..+.+|...|--++|+|. .+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 457999999999999988899999999999999998754 346788999999999999995 456889999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccccc-ceeEEEEccCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS-ICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 160 (349)
|.+|++.+++.... +. |.+.|+++.|+.+|.+|++.+.|+.|+|||.++++++.+-. +|.+ .-..+.|..
T Consensus 156 v~iWnv~tgeali~---l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~---- 226 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT---LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLA---- 226 (472)
T ss_pred EEEEeccCCceeee---cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEec----
Confidence 99999999864433 33 78999999999999999999999999999999999988876 6654 233444555
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc---CCCeEEEEEccCceeeeecCCCCCCccceeeeeccc
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 237 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (349)
++..+.+|. .+..+-+||..+-.
T Consensus 227 --------------------------------~g~i~tTGfsr~seRq~aLwdp~nl~---------------------- 252 (472)
T KOG0303|consen 227 --------------------------------SGKIFTTGFSRMSERQIALWDPNNLE---------------------- 252 (472)
T ss_pred --------------------------------cCceeeeccccccccceeccCccccc----------------------
Confidence 677555553 46789999987631
Q ss_pred cEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCc
Q 018858 238 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQ 300 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~ 300 (349)
.......+... ..|.---|. +|.++++.+| .|+.||.|.+.+..
T Consensus 253 ---------------eP~~~~elDtS-nGvl~PFyD---~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 253 ---------------EPIALQELDTS-NGVLLPFYD---PDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ---------------CcceeEEeccC-CceEEeeec---CCCCEEEEEecCCcceEEEEecCCC
Confidence 11222334332 234333455 7777776554 79999999998753
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=146.60 Aligned_cols=234 Identities=16% Similarity=0.139 Sum_probs=170.8
Q ss_pred cCCCCeeee-CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-EEEee-----cCCCCeEEEEEec--CCCEEE
Q 018858 4 AEAKPRRLR-GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTD-----VGNGPVTSLCFKS--GNEDII 74 (349)
Q Consensus 4 ~~~~~~~l~-~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~ 74 (349)
+.+++..|. .|-+.|.|+.|.|+ +..+++-. |..|.+|+++.... ...+. .+....++-+|+| +++.++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence 346667776 56679999999997 78888766 78999999987665 33332 2455677888998 777777
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcC-CceEeceeccccccceeEE
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSSV 152 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~ 152 (349)
+.+ |++++.||+++.+....+ -.+|...|..+.|+|+. .+|++++.||.|++||++ +..++.++. +|...|.++
T Consensus 189 tt~-d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~V 264 (370)
T KOG1007|consen 189 TTS-DSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAV 264 (370)
T ss_pred EeC-CCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEE
Confidence 766 899999999986544444 34577789999999976 567899999999999999 456788888 999999999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee---ecCCCCCCc--
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS---RSKSTTKPL-- 227 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~-- 227 (349)
.|+|. ..+++++|+.|..|.+|...+-.... .........
T Consensus 265 Rfn~~-----------------------------------hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~ 309 (370)
T KOG1007|consen 265 RFNPE-----------------------------------HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDE 309 (370)
T ss_pred EecCc-----------------------------------cceEEEecCCCceeEEEeccccccccccccccccccCcch
Confidence 99994 57888999999999999876521111 000000000
Q ss_pred --cceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 228 --KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 228 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
......- .-..+.++..|+..|++++|+. .|.-.+|+-+.||.+.|=.+..
T Consensus 310 dseer~kpL------------------~dg~l~tydehEDSVY~~aWSs--adPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 310 DSEERVKPL------------------QDGQLETYDEHEDSVYALAWSS--ADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hhHHhcccc------------------cccccccccccccceEEEeecc--CCCeeEEEeccCceEEeecCCh
Confidence 0000001 1134457888999999999994 4555778889999999877665
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=9.1e-21 Score=142.11 Aligned_cols=257 Identities=12% Similarity=0.072 Sum_probs=184.6
Q ss_pred CCeeeeCCceeeeEEEEec--CCCceEEEeCC----CCcEEEEECC--CCcEEEEe-ecCCCCeEEEEEecCCC-----E
Q 018858 7 KPRRLRGHKATATCCIASR--DRPGFVASSGE----DGCICWFDLR--SKDVQLVT-DVGNGPVTSLCFKSGNE-----D 72 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~--~~~~~l~t~~~----dg~i~vwd~~--~~~~~~~~-~~~~~~v~~~~~~~~~~-----~ 72 (349)
.+..+..+ -+++++.|+. +...+|+.|+. .+.|.|-.+. +++.+..- ..|.-+++.+.|.|+.. .
T Consensus 37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 34444432 4678888883 33456888764 3456655443 44433221 24888999999999763 3
Q ss_pred EEEEeCCCeEEEEEccCCC-cccceee-----ccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCce---Eeceec
Q 018858 73 IIYVSSGKEVKSFDVHMPA-SWRPLES-----YNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHC---LYKSLR 142 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~-~~~~~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~ 142 (349)
||++ +..+++|.+.... ....... -..+..+++++.|+. +-+++.+++-|-+..|||++++. +..++-
T Consensus 116 LATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 116 LATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 4444 3569999987421 1111111 123456899999987 45889999999999999999763 355566
Q ss_pred cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC
Q 018858 143 AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 222 (349)
Q Consensus 143 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 222 (349)
.|...|..++|... .-+.|++.+.||.+|+||++....
T Consensus 194 -AHDKEV~DIaf~~~-----------------------------------s~~~FASvgaDGSvRmFDLR~leH------ 231 (364)
T KOG0290|consen 194 -AHDKEVYDIAFLKG-----------------------------------SRDVFASVGADGSVRMFDLRSLEH------ 231 (364)
T ss_pred -ecCcceeEEEeccC-----------------------------------ccceEEEecCCCcEEEEEeccccc------
Confidence 79999999999873 457899999999999999996321
Q ss_pred CCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC-CeEEEEecCCCcc
Q 018858 223 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-KLVKVWDCSRFQG 301 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d-~~i~vwd~~~~~~ 301 (349)
-..+++-.....+...++|++ .|-+|+|+-..| ..|.|-|++...
T Consensus 232 -------------------------------STIIYE~p~~~~pLlRLswnk--qDpnymATf~~dS~~V~iLDiR~P~- 277 (364)
T KOG0290|consen 232 -------------------------------STIIYEDPSPSTPLLRLSWNK--QDPNYMATFAMDSNKVVILDIRVPC- 277 (364)
T ss_pred -------------------------------ceEEecCCCCCCcceeeccCc--CCchHHhhhhcCCceEEEEEecCCC-
Confidence 122233233245778899986 566788887765 679999999864
Q ss_pred eecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 302 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+..+.+|.+.|+.++|.|..+..|.+||+|..+-+||+.
T Consensus 278 -------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 278 -------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred -------cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 56778899999999999999888999999999999999984
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.1e-22 Score=177.94 Aligned_cols=217 Identities=13% Similarity=0.120 Sum_probs=172.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee--cCCCCeEEEEEecCC-CEEEEEeCCCe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKSGN-EDIIYVSSGKE 81 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~~~~~dg~ 81 (349)
.+.+.++..|++.|..+.|++..+++||+|+.||.|.|||+.+.+...+.. ...+.|.+++|+..- ..|++++.+|.
T Consensus 106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence 356778889999999999999977899999999999999998765444332 245789999998754 45778888999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCC---cEEEEEcCC-ceEeceeccccccceeEEEEcc
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGG---DVKIIDIRQ-HCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+.|||++..+.+..+..... ...+..++|+|+. ..++++++|. .|.+||+|. ...++.+. +|...|.++.|++
T Consensus 186 ~~iWDlr~~~pii~ls~~~~-~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~-~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPG-RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSLSWCP 263 (1049)
T ss_pred ceeccccCCCcccccccCCC-ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc-ccccceeeeccCC
Confidence 99999997543333333221 2457899999987 5666666554 499999994 45677887 9999999999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
. |..+|++++.|++|.+|+.+++
T Consensus 264 ~-----------------------------------D~~lllSsgkD~~ii~wN~~tg---------------------- 286 (1049)
T KOG0307|consen 264 Q-----------------------------------DPRLLLSSGKDNRIICWNPNTG---------------------- 286 (1049)
T ss_pred C-----------------------------------CchhhhcccCCCCeeEecCCCc----------------------
Confidence 5 6789999999999999999986
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+.+..+......+..+.|+| .+-..+++++-||.|.||.+....
T Consensus 287 ------------------Evl~~~p~~~nW~fdv~w~p--r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 287 ------------------EVLGELPAQGNWCFDVQWCP--RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ------------------eEeeecCCCCcceeeeeecC--CCcchhhhheeccceeeeeeecCC
Confidence 55666666677899999995 344488889999999999998765
No 172
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9.7e-20 Score=155.63 Aligned_cols=291 Identities=15% Similarity=0.161 Sum_probs=202.5
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC--C--cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--K--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
.|+..++|.+++|. ++++++|..||.|.+|.--. . .....+.-|...|.+++|+++|.+|++|+..+.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 47777999999998 89999999999999997432 1 2245677788999999999999999999999999999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc-----------cccceeEEEEccC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG-----------HSSICSSVQFIPW 157 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~~ 157 (349)
+++ .+.+..+ ...|..+.++||+.+.+....|..|.+....+.....++. + ..+-.+.++++|
T Consensus 282 T~~-kqfLPRL---gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs-gi~~~~~~~k~~~~~l~t~~~idp- 355 (792)
T KOG1963|consen 282 TGK-KQFLPRL---GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS-GIKPPTPSTKTRPQSLTTGVSIDP- 355 (792)
T ss_pred CCC-ccccccc---CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc-CccCCCccccccccccceeEEEcC-
Confidence 876 3444444 5789999999999999999999999999876554433332 1 122334455555
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC----C------CCCc
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS----T------TKPL 227 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~------~~~~ 227 (349)
..+.++-.+..|.|.+||+.+...+..+.. . ..-.
T Consensus 356 -----------------------------------r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ 400 (792)
T KOG1963|consen 356 -----------------------------------RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVG 400 (792)
T ss_pred -----------------------------------CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEe
Confidence 566778888999999999988665442211 1 1223
Q ss_pred cceeeeeccccEEEEeeeeeecC-c----------------eeeeee-eeecCCCcceEEEEEeeecCCccEEEEeeCCC
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSG-G----------------KRLHLD-YSVGGHTAAASCVAFSMFGERGKYLISGGNDK 289 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~~-~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~ 289 (349)
+..++.+..|.++++...+.... . ....+. .....|...+....+.+. +....+++++.||
T Consensus 401 itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~-~rs~~~vta~~dg 479 (792)
T KOG1963|consen 401 ITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNP-TRSVRCVTASVDG 479 (792)
T ss_pred eeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecC-cccceeEEeccCC
Confidence 45667777788888743321110 0 011111 122356665555555431 2233899999999
Q ss_pred eEEEEecCCCcceeccccccee-eeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 290 LVKVWDCSRFQGVQTSINNDLL-IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 290 ~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.++||-+...+........... .....|..++++.+|+. || .+++++.|++|.+||-
T Consensus 480 ~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~-dG-slla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ-DG-SLLAVSFDDTITIWDY 537 (792)
T ss_pred eEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC-CC-cEEEEecCCEEEEecC
Confidence 9999999655443322222222 12224888999999966 78 6888899999999984
No 173
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.8e-22 Score=158.84 Aligned_cols=295 Identities=16% Similarity=0.118 Sum_probs=217.3
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEe-ecCCCCeEEEEEec--CCCEEEEEeCCCe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKS--GNEDIIYVSSGKE 81 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 81 (349)
..+...|..|.+.|..+.|+.. |..|++|+.|..+.+||...++....+ .+|...|....|-| +...+++++.||.
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 3456778899999999999998 899999999999999999988875555 46888888878877 3456999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceec--ccccc---ceeEEEEc
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLR--AGHSS---ICSSVQFI 155 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~---~v~~~~~~ 155 (349)
+++=.+.........+.+..|.+.|.-++.-|+. .-|.+++.|+.+.-+|++.+.+...+. ..+.. ..+.++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 9988776543344345556688999999999976 678899999999999999765433322 01222 34555555
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee-----------eecCCCC
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-----------SRSKSTT 224 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~ 224 (349)
|- +...+++|+.|..+++||.+.-... ..+....
T Consensus 291 P~-----------------------------------nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 291 PR-----------------------------------NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred CC-----------------------------------CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccC
Confidence 52 5568999999999999998863221 1112234
Q ss_pred CCccceeeeeccccEEEEeeee-eecCc----eee----------eee-eeecCCCc--ceEEEEEeeecCCccEEEEee
Q 018858 225 KPLKGSQSTSKVNIRDAEMEIL-DQSGG----KRL----------HLD-YSVGGHTA--AASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~----------~~~-~~~~~h~~--~i~~i~~~~~~~~~~~l~s~~ 286 (349)
...|.+++++.++..++++.+. +.... ..+ ... ..+++|.. .|..+.| |+|...|+++|+
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF--fGPrsEyVvSGS 413 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF--FGPRSEYVVSGS 413 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeee--ccCccceEEecC
Confidence 5678899999777666542221 11100 000 122 23778854 5667665 358899999999
Q ss_pred CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.=|.|.||+-.++ +++..+.+....|+|+.-+|... .||++|-|.-|+||.
T Consensus 414 DCGhIFiW~K~t~---------eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 414 DCGHIFIWDKKTG---------EIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWT 464 (559)
T ss_pred ccceEEEEecchh---------HHHHHhhcccceEeccCCCCCCc-hhhccCCccceeeec
Confidence 9999999999998 67777777666999999988665 899999999999995
No 174
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.88 E-value=2.5e-20 Score=158.40 Aligned_cols=250 Identities=16% Similarity=0.161 Sum_probs=178.1
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE--EE----EeecCCCCeEEEEEecCCCE--EEEEeCCCeEEEE
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QL----VTDVGNGPVTSLCFKSGNED--IIYVSSGKEVKSF 85 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~----~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~iw 85 (349)
-...|+|+.|+|.+..+++.|..+|.|.+||+..+.. .. ....|..+++.+.|..+..- +++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 4578999999999899999999999999999987654 22 22348899999999765444 9999999999999
Q ss_pred EccCCCccc---ceeecc------CcccceEEEEEccCC-CEEEEEcCCCcEEEEEcC---Cce-----Eeceecccccc
Q 018858 86 DVHMPASWR---PLESYN------YNKEEINQIVCNPKS-SFLACADDGGDVKIIDIR---QHC-----LYKSLRAGHSS 147 (349)
Q Consensus 86 d~~~~~~~~---~~~~~~------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~---~~~-----~~~~~~~~~~~ 147 (349)
+++.-.... ...... .....+++++|.+.. ..|++|+++|.|..=+-. ... ....+. .|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~-~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI-THIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc-ccCc
Confidence 887532211 111111 112467899998844 789999999998773322 111 122344 6788
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
+|+++.++|- ....|++++ |.+++||.....
T Consensus 400 ~v~~v~~nPF-----------------------------------~~k~fls~g-DW~vriWs~~~~------------- 430 (555)
T KOG1587|consen 400 PVYAVSRNPF-----------------------------------YPKNFLSVG-DWTVRIWSEDVI------------- 430 (555)
T ss_pred ceEeeecCCC-----------------------------------ccceeeeec-cceeEeccccCC-------------
Confidence 8999999882 234444544 999999998731
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 307 (349)
..++..+..+...+++++|||. ....++++..||.|.+||+.....
T Consensus 431 --------------------------~~Pl~~~~~~~~~v~~vaWSpt--rpavF~~~d~~G~l~iWDLl~~~~------ 476 (555)
T KOG1587|consen 431 --------------------------ASPLLSLDSSPDYVTDVAWSPT--RPAVFATVDGDGNLDIWDLLQDDE------ 476 (555)
T ss_pred --------------------------CCcchhhhhccceeeeeEEcCc--CceEEEEEcCCCceehhhhhcccc------
Confidence 1455566667777999999963 345888999999999999987543
Q ss_pred cceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 308 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.....-+....+.+.|++ .++.|++|...|.+.+|+++
T Consensus 477 -~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 477 -EPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred -CCcccccccccccceeecCC-CCcEEEEecCCCcEEEEEcC
Confidence 22223333344555565644 78899999999999999984
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=5.8e-21 Score=148.87 Aligned_cols=207 Identities=14% Similarity=0.236 Sum_probs=159.5
Q ss_pred EeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCc----ccceeeccCcccceEEEEEccCC-CEEEEEcCCCc
Q 018858 53 VTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPAS----WRPLESYNYNKEEINQIVCNPKS-SFLACADDGGD 126 (349)
Q Consensus 53 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 126 (349)
.+.+|.++|..++|+| +.+.||+||.|.+|.||.+..+.. ..++..+.+|...|--++|+|.. +.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4568999999999999 455689999999999999876432 34556788899999999999965 78899999999
Q ss_pred EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 127 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
|.+||+.+++.+-++. |...|+++.|+- +|.+|++.+.|..|
T Consensus 156 v~iWnv~tgeali~l~--hpd~i~S~sfn~------------------------------------dGs~l~TtckDKkv 197 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD--HPDMVYSMSFNR------------------------------------DGSLLCTTCKDKKV 197 (472)
T ss_pred EEEEeccCCceeeecC--CCCeEEEEEecc------------------------------------CCceeeeeccccee
Confidence 9999999999888887 999999999998 89999999999999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCc-ceEEEEEeeecCCccEEEEe
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA-AASCVAFSMFGERGKYLISG 285 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~i~~~~~~~~~~~l~s~ 285 (349)
++||.+++ +.+..-.+|.+ .-..+.|- .++.++-||
T Consensus 198 Rv~dpr~~----------------------------------------~~v~e~~~heG~k~~Raifl---~~g~i~tTG 234 (472)
T KOG0303|consen 198 RVIDPRRG----------------------------------------TVVSEGVAHEGAKPARAIFL---ASGKIFTTG 234 (472)
T ss_pred EEEcCCCC----------------------------------------cEeeecccccCCCcceeEEe---ccCceeeec
Confidence 99999986 34444456654 22344455 688855555
Q ss_pred e---CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee-CCCeEEEeeC
Q 018858 286 G---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 286 ~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~ 348 (349)
- .+..+-+||..+.+. +........++.|.---+.+ |.+.++.+| .|+.|+.|.+
T Consensus 235 fsr~seRq~aLwdp~nl~e-------P~~~~elDtSnGvl~PFyD~-dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEE-------PIALQELDTSNGVLLPFYDP-DTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred cccccccceeccCcccccC-------cceeEEeccCCceEEeeecC-CCCEEEEEecCCcceEEEEe
Confidence 3 578999999887642 22223333444554444544 667777777 8999999875
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=3.4e-21 Score=146.67 Aligned_cols=219 Identities=14% Similarity=0.159 Sum_probs=158.7
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEe---ecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT---DVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
+++....+.+|...|+.+.+.|++.+++++++.|..|++|++++..++..+ .+|...|.++.|++++.+|++++.|.
T Consensus 124 ~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh 203 (385)
T KOG1034|consen 124 SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH 203 (385)
T ss_pred hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc
Confidence 466788899999999999999998899999999999999999999998776 46999999999999999999999999
Q ss_pred eEEEEEccCCCcccc-------------------------eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC-C
Q 018858 81 EVKSFDVHMPASWRP-------------------------LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-Q 134 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~ 134 (349)
+|++|++...+.... +.+...|...|.|+.|- |+++++-+-++.|..|... -
T Consensus 204 slk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl 281 (385)
T KOG1034|consen 204 SLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKL 281 (385)
T ss_pred eEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchh
Confidence 999999974321110 01122345566666664 5688888888899999872 1
Q ss_pred ceEeceecc------------ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC
Q 018858 135 HCLYKSLRA------------GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 202 (349)
Q Consensus 135 ~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (349)
.+.+...+. -....+.-+.|. +.+ -++.||.|..
T Consensus 282 ~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~----------------------------~d~------~~~~la~gnq 327 (385)
T KOG1034|consen 282 EESIHNVKPPESATTILGEFDYPMCDIWFIRFA----------------------------FDP------WQKMLALGNQ 327 (385)
T ss_pred hhhhhccCCCccceeeeeEeccCccceEEEEEe----------------------------ecH------HHHHHhhccC
Confidence 222112210 111222222221 111 5789999999
Q ss_pred CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEE
Q 018858 203 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL 282 (349)
Q Consensus 203 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l 282 (349)
.|.|.+||++....... ..+.+.. -...|...+|+ .|+.+|
T Consensus 328 ~g~v~vwdL~~~ep~~~----------------------------------ttl~~s~--~~~tVRQ~sfS---~dgs~l 368 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKC----------------------------------TTLTHSK--SGSTVRQTSFS---RDGSIL 368 (385)
T ss_pred CCcEEEEECCCCCCccC----------------------------------ceEEecc--ccceeeeeeec---ccCcEE
Confidence 99999999997421100 0111111 24578999999 899999
Q ss_pred EEeeCCCeEEEEecC
Q 018858 283 ISGGNDKLVKVWDCS 297 (349)
Q Consensus 283 ~s~~~d~~i~vwd~~ 297 (349)
+....|++|.=||.-
T Consensus 369 v~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 369 VLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEeCCCcEEEEEee
Confidence 999999999999864
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.86 E-value=5.2e-22 Score=168.38 Aligned_cols=281 Identities=16% Similarity=0.167 Sum_probs=187.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
.++.++.|.+|...|.|..|... |.++++|+.|..++||..++..++....+|.+.++.++.+.++.++++++.|..|+
T Consensus 179 kmk~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 45677889999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC-CceE--eceeccccccceeEEEEccCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCL--YKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~--~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+|.+.++ .++..+.+|.+.|++++|+|-. +.+.||++++||.+ .... ..-++......+-.+.|..
T Consensus 258 vWrl~~~---~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~---- 326 (1113)
T KOG0644|consen 258 VWRLPDG---APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN---- 326 (1113)
T ss_pred EEecCCC---chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccc----
Confidence 9999976 5566777899999999999953 77889999999988 1110 0111111223344444444
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++.-+++++.|+.-..|.......... ..--+..+.+-..+
T Consensus 327 --------------------------------~~~~f~Tgs~d~ea~n~e~~~l~~~~~-------~lif~t~ssd~~~~ 367 (1113)
T KOG0644|consen 327 --------------------------------NGDRFLTGSRDGEARNHEFEQLAWRSN-------LLIFVTRSSDLSSI 367 (1113)
T ss_pred --------------------------------cccccccccCCcccccchhhHhhhhcc-------ceEEEecccccccc
Confidence 333444444444444444332100000 00000000000000
Q ss_pred EEeeee----eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 241 AEMEIL----DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 241 ~~~~~~----~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
...... .......+.+.+.+.+|...++.+.++|| +.+...+++.||...|||+-.+.. ......+
T Consensus 368 ~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf--n~ri~msag~dgst~iwdi~eg~p--------ik~y~~g 437 (1113)
T KOG0644|consen 368 VVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF--NPRIAMSAGYDGSTIIWDIWEGIP--------IKHYFIG 437 (1113)
T ss_pred ceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC--CcHhhhhccCCCceEeeecccCCc--------ceeeecc
Confidence 000000 00001122556778889999999999974 556778999999999999988742 2223344
Q ss_pred cccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 317 LNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
|. .+..-+|++ +|..++....-|.++|..
T Consensus 438 h~-kl~d~kFSq-dgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 438 HG-KLVDGKFSQ-DGTSIALSDDHGQLYILG 466 (1113)
T ss_pred cc-eeeccccCC-CCceEecCCCCCceEEec
Confidence 43 444557766 776666666667776653
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=2e-18 Score=149.07 Aligned_cols=247 Identities=22% Similarity=0.377 Sum_probs=194.6
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-EEEEeecCC-CCeEEEEE-ecCCC-EEEEEeC-CCeEEE
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-VQLVTDVGN-GPVTSLCF-KSGNE-DIIYVSS-GKEVKS 84 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-dg~i~i 84 (349)
.+..|...+.++.+.+. +..++.++.|+.+.+|+...+. ....+..+. ..+..+.+ ++++. .++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 46689999999999998 7889989999999999998886 566666544 36777777 77777 4555444 899999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|+... .......+..|...+..++|+|++..++.++. ++.+++|++..+..+..+. .|...+.+++|+|
T Consensus 139 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~------- 208 (466)
T COG2319 139 WDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSP------- 208 (466)
T ss_pred EEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcC-------
Confidence 99985 12444555667788999999999998888885 9999999999888888888 7899999999998
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
++. .+++++.|+.|++||...+
T Consensus 209 -----------------------------~~~~~~~~~~~d~~i~~wd~~~~---------------------------- 231 (466)
T COG2319 209 -----------------------------DGGLLIASGSSDGTIRLWDLSTG---------------------------- 231 (466)
T ss_pred -----------------------------CcceEEEEecCCCcEEEEECCCC----------------------------
Confidence 566 5555589999999987743
Q ss_pred eeeeeecCceeeeeee-eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 243 MEILDQSGGKRLHLDY-SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~-~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
.... .+.+|.... ...|+ +++.++++++.|+.+++|++..... .+.....|...+
T Consensus 232 ------------~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v 287 (466)
T COG2319 232 ------------KLLRSTLSGHSDSV-VSSFS---PDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSV 287 (466)
T ss_pred ------------cEEeeecCCCCcce-eEeEC---CCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccE
Confidence 2223 466666654 33777 7888999999999999999997642 122226788999
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.++.+.| ++..+++++.|+.+++|++.
T Consensus 288 ~~~~~~~-~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 288 LSVAFSP-DGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred EEEEECC-CCCEEEEeeCCCcEEEEEcC
Confidence 9999988 67778888888999999863
No 179
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.86 E-value=4.8e-19 Score=156.42 Aligned_cols=305 Identities=13% Similarity=0.149 Sum_probs=203.6
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-------cEEEEeecCCCCeEEEEEecCCCEEEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSGNEDIIYV 76 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 76 (349)
.|..+.+|..|...|..++.++..+.+++||+.||+|++||.... +...++..-...+.++...+.++.+|.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 467888999999999999999886799999999999999998642 1223344456788999999999999999
Q ss_pred eCCCeEEEEEccCCCcccc--e----eeccCcccceEEEEEccC-C-CEEEEEcCCCcEEEEEcCCceEeceecc-cccc
Q 018858 77 SSGKEVKSFDVHMPASWRP--L----ESYNYNKEEINQIVCNPK-S-SFLACADDGGDVKIIDIRQHCLYKSLRA-GHSS 147 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~--~----~~~~~~~~~v~~~~~~~~-~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~ 147 (349)
+.||.|++.++......+. . .........+..-++... + ..++.+...+.|..||++.......++. ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999999875211111 0 111111122333344332 2 3778888889999999997766655541 3356
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
.|++++.+| .++.++.|+..|.+.+||++=+..+.....+...+
T Consensus 1197 ~vTSi~idp------------------------------------~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~ 1240 (1431)
T KOG1240|consen 1197 LVTSIVIDP------------------------------------WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAP 1240 (1431)
T ss_pred ceeEEEecC------------------------------------CceEEEEecCCceEEEEEeecCceeecccCcccCC
Confidence 788888888 68899999999999999999888888888888888
Q ss_pred cceeeeecccc---EEEEeee--------eeecCceeeeee----------eeec------CCCcceEEEEEeeecCCcc
Q 018858 228 KGSQSTSKVNI---RDAEMEI--------LDQSGGKRLHLD----------YSVG------GHTAAASCVAFSMFGERGK 280 (349)
Q Consensus 228 ~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~----------~~~~------~h~~~i~~i~~~~~~~~~~ 280 (349)
+..+..+|-.+ ..++.+. |+.........+ ..+. .+.-......+. ..+.
T Consensus 1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~---~~~~ 1317 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC---EKNG 1317 (1431)
T ss_pred cceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc---cCCc
Confidence 88887776443 3333222 111000000000 0000 011111122222 3567
Q ss_pred EEEEeeCCCeEEEEecCCCcceec--------------------c-----------------cc-----cc-----eeee
Q 018858 281 YLISGGNDKLVKVWDCSRFQGVQT--------------------S-----------------IN-----ND-----LLIK 313 (349)
Q Consensus 281 ~l~s~~~d~~i~vwd~~~~~~~~~--------------------~-----------------~~-----~~-----~~~~ 313 (349)
++++|+.|..|+.||....+.... . .. .. ....
T Consensus 1318 ~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~p 1397 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDP 1397 (1431)
T ss_pred eeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCC
Confidence 999999999999999876543200 0 00 00 0011
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
...|.++|+++++...+..+|++++.||.|+||.
T Consensus 1398 s~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1398 STYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 2358889999998775656899999999999994
No 180
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=6.7e-19 Score=133.89 Aligned_cols=230 Identities=15% Similarity=0.128 Sum_probs=174.3
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
..+.--.++|+|.+|+++ +..+|.+.....|.||.....+ ..+++..|...|+.+.|+|..+.|++|+.|..-++|
T Consensus 4 ~~~~~~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred EEeeeccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 344445689999999998 8999999999999999877554 578899999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe---ceeccccccceeEEEEccCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
....+...++.-.+..+...++++.|+|.++.||+|+....|.||-++..+-- +.++..+.+.|.+++|+|
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp------ 156 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP------ 156 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC------
Confidence 98555555555455556789999999999999999999999999988754332 112214567899999999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
++-+|+.|+.|+..++|..--...... . +-.|-|..
T Consensus 157 ------------------------------nnVLlaaGs~D~k~rVfSayIK~Vdek-p----------ap~pWgsk--- 192 (361)
T KOG1523|consen 157 ------------------------------NNVLLAAGSTDGKCRVFSAYIKGVDEK-P----------APTPWGSK--- 192 (361)
T ss_pred ------------------------------CcceecccccCcceeEEEEeeeccccC-C----------CCCCCccC---
Confidence 788999999999999997642100000 0 00000000
Q ss_pred eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 243 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
..-..++.++....+.+..+.|+ |.|..|+=.+.|..+.+=|.....
T Consensus 193 --------~PFG~lm~E~~~~ggwvh~v~fs---~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 193 --------MPFGQLMSEASSSGGWVHGVLFS---PSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred --------CcHHHHHHhhccCCCceeeeEeC---CCCCEeeEecCCCceEEeecCCCc
Confidence 00112333443456789999999 899999999999999999988764
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=9.2e-18 Score=139.31 Aligned_cols=257 Identities=11% Similarity=0.077 Sum_probs=163.4
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEe-CCCCcEEEEECC-CCcE--EEEeecCCCCeEEEEEecCCCEEEEEeC-CCe
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASS-GEDGCICWFDLR-SKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKE 81 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~-~~dg~i~vwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~ 81 (349)
.+++++ +.+....++++|+ +++|+.+ ..++.|.+|++. +++. +.... .......++++|+++++++++. ++.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred eeeEEe-cCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCe
Confidence 455554 3455778899998 7877655 457899999986 3433 22222 2345678999999999988875 789
Q ss_pred EEEEEccCCC-cccceeeccCcccceEEEEEccCCCEEEEE-cCCCcEEEEEcCCceEece-----eccccccceeEEEE
Q 018858 82 VKSFDVHMPA-SWRPLESYNYNKEEINQIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKS-----LRAGHSSICSSVQF 154 (349)
Q Consensus 82 i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~-----~~~~~~~~v~~~~~ 154 (349)
|.+|++++.. ....+..... ......++++|++++++++ ..++.|.+||+.+...+.. ...........+.|
T Consensus 104 v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred EEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 9999997422 2222222222 2346778899999888654 4568999999976332211 11012334567888
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC-CCeEEEEEccCc--eeeeecCCCCCCcccee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESE--LNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~ 231 (349)
+| ++++++++.. ++.|.+|+++.. +..
T Consensus 183 ~p------------------------------------dg~~lyv~~~~~~~v~v~~~~~~~~~~~-------------- 212 (330)
T PRK11028 183 HP------------------------------------NQQYAYCVNELNSSVDVWQLKDPHGEIE-------------- 212 (330)
T ss_pred CC------------------------------------CCCEEEEEecCCCEEEEEEEeCCCCCEE--------------
Confidence 88 7888877765 899999999742 100
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeeec---CCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccc
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~ 307 (349)
....+..+. .+......+.++ |++++++++. .++.|.+|++.......
T Consensus 213 ---------------------~~~~~~~~p~~~~~~~~~~~i~~~---pdg~~lyv~~~~~~~I~v~~i~~~~~~~---- 264 (330)
T PRK11028 213 ---------------------CVQTLDMMPADFSDTRWAADIHIT---PDGRHLYACDRTASLISVFSVSEDGSVL---- 264 (330)
T ss_pred ---------------------EEEEEecCCCcCCCCccceeEEEC---CCCCEEEEecCCCCeEEEEEEeCCCCeE----
Confidence 000011111 012233468888 8999998885 47899999996542110
Q ss_pred cceeeeccccccceEEEEeecCCCCcEEEeeC-CCeEEEeeC
Q 018858 308 NDLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSI 348 (349)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~ 348 (349)
.++..... ......++++| ++++|+++.. ++.|.+|++
T Consensus 265 -~~~~~~~~-~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 265 -SFEGHQPT-ETQPRGFNIDH-SGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred -EEeEEEec-cccCCceEECC-CCCEEEEEEccCCcEEEEEE
Confidence 11111111 12445678887 8888888764 899999976
No 182
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.2e-19 Score=148.71 Aligned_cols=267 Identities=14% Similarity=0.024 Sum_probs=182.4
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCC--EEEEEcCCCcEEE
Q 018858 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS--FLACADDGGDVKI 129 (349)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i 129 (349)
..+.+|.+.|.+|...|.|..|++|+.||+|+||.+.++.+++.... .+.|.|++|+|.+. .||++.. ..+.|
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~-~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVG-ECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----cceeEEEEecCCCCceeEEEEec-CceEE
Confidence 46678999999999999999999999999999999999876655543 46899999999763 4444443 34666
Q ss_pred EEcCCceEece---------eccccccceeEEEEccCCCCCCCCCCCC--CCccccCCceeEEeecCcccccCCCCcEEE
Q 018858 130 IDIRQHCLYKS---------LRAGHSSICSSVQFIPWKPWEGLPENNG--NAGQCYNPAFVHAIAIPDADMLDKTNKICV 198 (349)
Q Consensus 130 ~d~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (349)
.+..-|..+.. ...........+.|++. ..+.-. .-........+..+.++. .|.||+
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~-----~~~e~~~~v~~~I~~~k~i~~vtWHr------kGDYla 537 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRA-----SLDELEKGVCIVIKHPKSIRQVTWHR------KGDYLA 537 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechh-----hhhhhccceEEEEecCCccceeeeec------CCceEE
Confidence 66543321111 10000001122334331 000000 001112334566666666 899999
Q ss_pred EEcCC---CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc--eeeeeeeeecCCCcceEEEEEe
Q 018858 199 VAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG--KRLHLDYSVGGHTAAASCVAFS 273 (349)
Q Consensus 199 ~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~i~~~ 273 (349)
+...+ ..|.|+++...... .........+..+.|+|...++.++......+. ....+++.+......|..++++
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msih 616 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIH 616 (733)
T ss_pred EeccCCCcceEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeec
Confidence 87654 47889998865433 333345677889999999988876443333222 2334455565566789999999
Q ss_pred eecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 274 MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
|.|.-|+.|+.|+.+..||+.-.. ++.+.+..|...++++++++ .-.++++|+.||++.|+-
T Consensus 617 ---p~GDnli~gs~d~k~~WfDldlss--------kPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 617 ---PNGDNLILGSYDKKMCWFDLDLSS--------KPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFH 678 (733)
T ss_pred ---CCCCeEEEecCCCeeEEEEcccCc--------chhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEe
Confidence 899999999999999999998753 56778888999999999998 444899999999999873
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.3e-19 Score=147.33 Aligned_cols=250 Identities=16% Similarity=0.198 Sum_probs=166.0
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-cCCCCeEEEEEec--CCCEEEEEeCCCeE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKS--GNEDIIYVSSGKEV 82 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i 82 (349)
.+.+.|.||++.|.|++|+.+ |.+|++|+.|-.+.|||.-..+++..+. +|...|.++.|-| +.+.+++|..|..|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred chhhhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 456788999999999999998 9999999999999999998888877764 7999999999988 56678999999999
Q ss_pred EEEEccCCC-------cccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEE
Q 018858 83 KSFDVHMPA-------SWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 83 ~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
+++|+...+ ...+...+..|...|..++-.|++ +.|.++++||+|+-+|++....... .....+..+.+
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p---~~~~~~~l~ny 196 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP---DEDCPSILVNY 196 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc---cccccHHHHHh
Confidence 999998521 223445567788899999999988 8899999999999999986432111 01111112222
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec----CCCCCCccce
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS----KSTTKPLKGS 230 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~ 230 (349)
.|+ .....+++++|. +..+|++|+.|...++||.+........ ..+.+...++
T Consensus 197 ~~~------------------lielk~ltisp~-----rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~c 253 (758)
T KOG1310|consen 197 NPQ------------------LIELKCLTISPS-----RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRC 253 (758)
T ss_pred chh------------------hheeeeeeecCC-----CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccch
Confidence 221 122334444442 6789999999999999997532111100 0011111112
Q ss_pred e-eeeccccEEEEeeeeeecCceeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 231 Q-STSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
+ .|+|.+. +...+ ....++++.+..+.|+|.-|+..-..-.|+++|+...+.
T Consensus 254 v~yf~p~hl-------------------kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 254 VRYFSPGHL-------------------KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred hheecCccc-------------------cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 2 2333221 11111 112344444333338987666655456799999988753
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=137.44 Aligned_cols=253 Identities=17% Similarity=0.188 Sum_probs=173.3
Q ss_pred cCCCCeeeeCCceeeeEEEEecC-CCceEEEeCCCCcEEEEECCCCcEEEE--eecCC-CCeEEEEEecCCCEEEEEeC-
Q 018858 4 AEAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLV--TDVGN-GPVTSLCFKSGNEDIIYVSS- 78 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~~- 78 (349)
+++.++.+++|...+..+.|... .+..+.+++.||+|++||++....... +..+. .+..+++....++.+++|..
T Consensus 59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~ 138 (376)
T KOG1188|consen 59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTEL 138 (376)
T ss_pred chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccc
Confidence 56788999999999999999874 367899999999999999987665433 33344 46677777767777777763
Q ss_pred ---CCeEEEEEccCCCccccee-eccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCce----Eeceeccccccce
Q 018858 79 ---GKEVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHC----LYKSLRAGHSSIC 149 (349)
Q Consensus 79 ---dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v 149 (349)
+-.|.+||++..+. .+. ....|.+.|+++.|+|.. +.|++|+.||-|.+||++... .+.++. +...|
T Consensus 139 ~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN--~~sSI 214 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN--HGSSI 214 (376)
T ss_pred ccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc--cccee
Confidence 56899999997543 122 245688999999999965 899999999999999998542 233443 67778
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCC-Ccc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK-PLK 228 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~ 228 (349)
.++.|..+ .-+.+.+-+..+...+|+++.+.....+..+.. ...
T Consensus 215 ~~igw~~~-----------------------------------~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d 259 (376)
T KOG1188|consen 215 HLIGWLSK-----------------------------------KYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD 259 (376)
T ss_pred eeeeeecC-----------------------------------CcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence 99999873 234577888899999999997764443332210 000
Q ss_pred c--------ee-eeeccc-cEEEEeeeeeec----------CceeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeC
Q 018858 229 G--------SQ-STSKVN-IRDAEMEILDQS----------GGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 229 ~--------~~-~~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
. -+ ..+|.. ...+..+...+. ..........+.+ |..-|+++.|. ..+.++.|||+
T Consensus 260 ~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~---~~~~~l~TGGE 336 (376)
T KOG1188|consen 260 LRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFD---VKNDVLYTGGE 336 (376)
T ss_pred HHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhh---cccceeeccCC
Confidence 0 00 222322 222222221110 0111222334454 66778888887 78889999999
Q ss_pred CCeEEEEecCC
Q 018858 288 DKLVKVWDCSR 298 (349)
Q Consensus 288 d~~i~vwd~~~ 298 (349)
||.+.+|..+.
T Consensus 337 DG~l~~Wk~~d 347 (376)
T KOG1188|consen 337 DGLLQAWKVED 347 (376)
T ss_pred CceEEEEecCC
Confidence 99999999644
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.3e-18 Score=151.59 Aligned_cols=248 Identities=14% Similarity=0.126 Sum_probs=175.4
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC---CCCeEEEEEec--CCCEEEEEeCCCeEEEEEcc-CC
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG---NGPVTSLCFKS--GNEDIIYVSSGKEVKSFDVH-MP 90 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~-~~ 90 (349)
+-..+.|+|- ...++++...-.|++||.+.++.+..+..+ ...|+.+.+-. +..++++|+.||.|+||+-- ..
T Consensus 1066 ~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCC-CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3455778887 678888887789999999999987777654 35688888754 55679999999999999633 22
Q ss_pred -CcccceeeccCc-------ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 91 -ASWRPLESYNYN-------KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 91 -~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
+..+.+..+.+- .+.-.-+.|.....+|+++++-..|+|||.....+...+..+.+..++++.-+..
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~----- 1219 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV----- 1219 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc-----
Confidence 222222222111 1111346777776677777778899999999887777776455556666655442
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
.|++++.|..||.|++||.+...
T Consensus 1220 ------------------------------~gn~i~AGfaDGsvRvyD~R~a~--------------------------- 1242 (1387)
T KOG1517|consen 1220 ------------------------------HGNIIAAGFADGSVRVYDRRMAP--------------------------- 1242 (1387)
T ss_pred ------------------------------CCceEEEeecCCceEEeecccCC---------------------------
Confidence 57999999999999999998631
Q ss_pred eeeeeecCceeeeeeeeecCCCcc--eEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCCcceecccccceeeecccc--
Q 018858 243 MEILDQSGGKRLHLDYSVGGHTAA--ASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-- 317 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h~~~--i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-- 317 (349)
.-..+...+.|... |..+.+- +.|- .|++|+.||.|++||++..... ..+ ....|
T Consensus 1243 ----------~ds~v~~~R~h~~~~~Iv~~slq---~~G~~elvSgs~~G~I~~~DlR~~~~e------~~~-~iv~~~~ 1302 (1387)
T KOG1517|consen 1243 ----------PDSLVCVYREHNDVEPIVHLSLQ---RQGLGELVSGSQDGDIQLLDLRMSSKE------TFL-TIVAHWE 1302 (1387)
T ss_pred ----------ccccceeecccCCcccceeEEee---cCCCcceeeeccCCeEEEEecccCccc------ccc-eeeeccc
Confidence 11344556677766 8899988 5444 5999999999999999984211 111 11222
Q ss_pred -ccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 318 -NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 318 -~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+..+++..++ +...+++|+. +.|+||++.
T Consensus 1303 yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1303 YGSALTALTVHE-HAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred cCccceeeeecc-CCCeeeecCc-ceEEEEecC
Confidence 33589999988 5668888887 999999974
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=2e-17 Score=142.89 Aligned_cols=249 Identities=22% Similarity=0.372 Sum_probs=189.3
Q ss_pred CCeeeeCCce-eeeEEEE-ecCCCc-eEEEeCC-CCcEEEEECCC-CcEEEEeecCCCCeEEEEEecCCCEEEEEeC-CC
Q 018858 7 KPRRLRGHKA-TATCCIA-SRDRPG-FVASSGE-DGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GK 80 (349)
Q Consensus 7 ~~~~l~~h~~-~i~~~~~-~~~~~~-~l~t~~~-dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg 80 (349)
....+.++.. .+..+.+ .++ +. +++..+. |+.+.+|+... ......+..|...|..++|+|++..+++++. ++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 178 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPD-GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178 (466)
T ss_pred eEEEEeccCCCceeeEEEECCC-cceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCC
Confidence 3455555333 6677776 676 44 5555444 89999999998 7778888999999999999999998888886 99
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCceEec-eeccccccceeEEEEccCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYK-SLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~ 158 (349)
.+++|++..+ ..+..+..|...+.+++|+|++. .+++++.|+.|++||...+.... .+. .|.... ...|+|
T Consensus 179 ~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~-- 251 (466)
T COG2319 179 TIKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSP-- 251 (466)
T ss_pred ceEEEEcCCC---ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECC--
Confidence 9999999863 34445555788999999999987 55555899999999988777776 566 666664 337888
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecccc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
++..+++++.|+.+++|+++...
T Consensus 252 ----------------------------------~~~~~~~~~~d~~~~~~~~~~~~----------------------- 274 (466)
T COG2319 252 ----------------------------------DGSLLASGSSDGTIRLWDLRSSS----------------------- 274 (466)
T ss_pred ----------------------------------CCCEEEEecCCCcEEEeeecCCC-----------------------
Confidence 56788899999999999999631
Q ss_pred EEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec--cc
Q 018858 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN--IN 316 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~ 316 (349)
.....+.+|...+.++.+. |++..+++++.|+.+.+||..... ..... ..
T Consensus 275 ----------------~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~ 326 (466)
T COG2319 275 ----------------SLLRTLSGHSSSVLSVAFS---PDGKLLASGSSDGTVRLWDLETGK---------LLSSLTLKG 326 (466)
T ss_pred ----------------cEEEEEecCCccEEEEEEC---CCCCEEEEeeCCCcEEEEEcCCCc---------eEEEeeecc
Confidence 0112225678899999999 778888889889999999888863 22233 36
Q ss_pred cccceEEEEeecCCCCcEEEe-eCCCeEEEeeCC
Q 018858 317 LNKKVNWLCTTPTESENLVVC-DTSKVVKVYSIS 349 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~ 349 (349)
|...+..+.+ +.++..++.+ ..|+.+.+|++.
T Consensus 327 ~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 327 HEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred cCCceEEEEE-CCCCCEEEEeecCCCcEEeeecC
Confidence 7778899998 5443456666 688999999863
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.4e-19 Score=141.13 Aligned_cols=199 Identities=18% Similarity=0.194 Sum_probs=150.5
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
.+++|+++ +..|++++.||++|+|+..+...+.....|.+.|.++.|+|||+.|++.+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 67899998 8999999999999999998888877888899999999999999999999999 899999998743333222
Q ss_pred ccCcccceEEEEEccCC-----CEEEEEcCCCcEEEEEcCCceE---e--ceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 99 YNYNKEEINQIVCNPKS-----SFLACADDGGDVKIIDIRQHCL---Y--KSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 99 ~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
.. -+.....+.|+.++ ..++....-+.|+.||+...+- + ++.. .....|++++.++
T Consensus 226 ~~-k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~------------ 291 (398)
T KOG0771|consen 226 FS-KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSD------------ 291 (398)
T ss_pred cc-cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcC------------
Confidence 11 12345556676655 2333344456677777652221 1 1111 2334688888887
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
+|++++.|+.||.|.+++..+-+
T Consensus 292 ------------------------dGkf~AlGT~dGsVai~~~~~lq--------------------------------- 314 (398)
T KOG0771|consen 292 ------------------------DGKFLALGTMDGSVAIYDAKSLQ--------------------------------- 314 (398)
T ss_pred ------------------------CCcEEEEeccCCcEEEEEeceee---------------------------------
Confidence 89999999999999999998632
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.....-+.|...|+.+.|+ |+.+++++.+.|....|..+.-.
T Consensus 315 ------~~~~vk~aH~~~VT~ltF~---Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 315 ------RLQYVKEAHLGFVTGLTFS---PDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ------eeEeehhhheeeeeeEEEc---CCcCcccccccCCceeEEEEeec
Confidence 2233445788999999999 89999999999999999887653
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=2e-19 Score=149.65 Aligned_cols=236 Identities=14% Similarity=0.143 Sum_probs=170.0
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+.+.++++|++|++.|.|++|+.+ |+.+++|+.|..+.+|+.+-... ..+ .|...|.|+.|+|-...+++++-. ..
T Consensus 41 ndG~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dF 116 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DF 116 (1081)
T ss_pred CCcccccccccccceEEEEEEccC-CceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcchh-hc
Confidence 467889999999999999999998 99999999999999998543222 222 389999999999999999998853 36
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEecee--ccccccceeEEEEccCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL--RAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~ 160 (349)
-+|..+.. .+.... ....+.+.+|..||.+|+.|-.+|+|.+-+-. ++..-.+ +.+.+.+|.+++|+|...-
T Consensus 117 glWS~~qK----~V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 117 GLWSPEQK----SVSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred cccChhhh----hHHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCC
Confidence 67876632 111111 13568889999999999999999999998743 3322222 2257789999999996321
Q ss_pred C-----CCCC--CC----CCCccccCC-----ceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC
Q 018858 161 E-----GLPE--NN----GNAGQCYNP-----AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 224 (349)
Q Consensus 161 ~-----~~~~--~~----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 224 (349)
- +..| ++ ...++.+.. -..+++.+-+ +|.+++.|+.|+.+.+|--+.
T Consensus 191 G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~------NGEy~LiGGsdk~L~~fTR~G----------- 253 (1081)
T KOG1538|consen 191 GRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFT------NGEYILLGGSDKQLSLFTRDG----------- 253 (1081)
T ss_pred CccceEEEEeccceeEEEEecceeecccccCCCCchhheecc------CCcEEEEccCCCceEEEeecC-----------
Confidence 1 0001 11 122222211 1234444444 899999999999999987653
Q ss_pred CCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
-.+.++......|+.++.. |++++++.|+.||+|..|++-.
T Consensus 254 ------------------------------vrLGTvg~~D~WIWtV~~~---PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 254 ------------------------------VRLGTVGEQDSWIWTVQAK---PNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ------------------------------eEEeeccccceeEEEEEEc---cCCceEEEEEccCeeehhhhHH
Confidence 2333444456789999999 8999999999999999998753
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=1.4e-17 Score=129.23 Aligned_cols=235 Identities=15% Similarity=0.193 Sum_probs=167.2
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC--CeEEEEEccCCCc
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG--KEVKSFDVHMPAS 92 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~ 92 (349)
...+..+.|..+ ...|..|+.|| .++|+.+.-............|.-+-|+ ..++|..+.+ +.+++.+++....
T Consensus 5 ~~ti~~~~~Nqd-~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQD-STLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred Ccceeeeeeccc-eeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce
Confidence 456777778887 77888888887 5888876544322222233345555565 4466666654 4689999886433
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc--cccceeEEEEccCCCCCCCCCCCCCC
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG--HSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
+..+. + ...|.++.++.+ .|+++-++ .|+|||+++.+++.++... +...+.++++++
T Consensus 81 ICe~~-f---pt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-------------- 139 (391)
T KOG2110|consen 81 ICEIF-F---PTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-------------- 139 (391)
T ss_pred EEEEe-c---CCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC--------------
Confidence 22221 2 367888888653 55555554 4999999999999888722 223344444444
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEc--CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
.+.+++.-+ ..|.|.+||..+-
T Consensus 140 ----------------------~n~ylAyp~s~t~GdV~l~d~~nl---------------------------------- 163 (391)
T KOG2110|consen 140 ----------------------ANCYLAYPGSTTSGDVVLFDTINL---------------------------------- 163 (391)
T ss_pred ----------------------CCceEEecCCCCCceEEEEEcccc----------------------------------
Confidence 556777543 4689999999873
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCe-EEEEecCCCcceecccccceeeeccc--cccceEEEE
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNIN--LNKKVNWLC 325 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~ 325 (349)
+....+..|++.+-+++|+ ++|.+|||+|+.|+ |||+.+.+++ .+..+.. ....|.+++
T Consensus 164 ------~~v~~I~aH~~~lAalafs---~~G~llATASeKGTVIRVf~v~~G~---------kl~eFRRG~~~~~IySL~ 225 (391)
T KOG2110|consen 164 ------QPVNTINAHKGPLAALAFS---PDGTLLATASEKGTVIRVFSVPEGQ---------KLYEFRRGTYPVSIYSLS 225 (391)
T ss_pred ------eeeeEEEecCCceeEEEEC---CCCCEEEEeccCceEEEEEEcCCcc---------EeeeeeCCceeeEEEEEE
Confidence 5667788999999999999 99999999999887 6999999984 4444432 245789999
Q ss_pred eecCCCCcEEEeeCCCeEEEeeCC
Q 018858 326 TTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 326 ~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|+| ++++|++.|..++|+||.++
T Consensus 226 Fs~-ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 226 FSP-DSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred ECC-CCCeEEEecCCCeEEEEEec
Confidence 988 88899999999999999874
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.1e-19 Score=139.86 Aligned_cols=204 Identities=16% Similarity=0.180 Sum_probs=149.4
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEecee
Q 018858 62 TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL 141 (349)
Q Consensus 62 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 141 (349)
..++|+.+|..+++++.||.++||++... ..+.....|...|.++.|+||+++|++-+.| ..+||+++++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 67899999999999999999999997753 3344455677899999999999999999999 8999999999766655
Q ss_pred c-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC-cEEEEEcCCCeEEEEEccCceeeee
Q 018858 142 R-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISR 219 (349)
Q Consensus 142 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~ 219 (349)
. ...+.....+.|..+.. .+. ..++....-+.|+.||+..-.
T Consensus 224 t~~~k~~~~~~cRF~~d~~--------------------------------~~~l~laa~~~~~~~v~~~~~~~w~---- 267 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNA--------------------------------QETLRLAASQFPGGGVRLCDISLWS---- 267 (398)
T ss_pred CCcccchhhhhceecccCC--------------------------------CceEEEEEecCCCCceeEEEeeeec----
Confidence 4 12344556677776310 001 223334455677887776310
Q ss_pred cCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 220 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+ + .....+.... ...|++++.+ ++|++++.|+.||.|-|++..+.
T Consensus 268 ---------------~~-~--------------~l~~~~~~~~-~~siSsl~VS---~dGkf~AlGT~dGsVai~~~~~l 313 (398)
T KOG0771|consen 268 ---------------GS-N--------------FLRLRKKIKR-FKSISSLAVS---DDGKFLALGTMDGSVAIYDAKSL 313 (398)
T ss_pred ---------------cc-c--------------ccchhhhhhc-cCcceeEEEc---CCCcEEEEeccCCcEEEEEecee
Confidence 00 0 0011122222 3468999999 99999999999999999999987
Q ss_pred cceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 300 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+ ........|...|+.+.|+| +.+++++.+.|..+.|..+
T Consensus 314 q--------~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 314 Q--------RLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred e--------eeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEE
Confidence 4 33345567999999999999 8889999999988887654
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=1.1e-16 Score=124.28 Aligned_cols=198 Identities=13% Similarity=0.209 Sum_probs=154.6
Q ss_pred eeeeEEEEecCCCceEEEeCCC--CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 16 ATATCCIASRDRPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
..|..+.|+.. ++|..+.+ ..+++.+.+.+..++.+. ...+|.++.++ .++|+++-.+. |+|||+++.+..
T Consensus 47 ~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklL 119 (391)
T KOG2110|consen 47 VSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLL 119 (391)
T ss_pred eEEEEeecccc---eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceee
Confidence 34666677643 55544443 458999988888887776 45678888886 45677777555 999999998777
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEE--cCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACA--DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
..+...+.+...+.++++++.+.++|.- ...|.|.+||+.+-+....+. .|.+.+.+++|++
T Consensus 120 hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~--------------- 183 (391)
T KOG2110|consen 120 HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSP--------------- 183 (391)
T ss_pred hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECC---------------
Confidence 7777776666778888888888888743 346889999999999999999 9999999999999
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCe-EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV-VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 250 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
+|.+||+++..|+ ||+|.+.+++..
T Consensus 184 ---------------------~G~llATASeKGTVIRVf~v~~G~kl--------------------------------- 209 (391)
T KOG2110|consen 184 ---------------------DGTLLATASEKGTVIRVFSVPEGQKL--------------------------------- 209 (391)
T ss_pred ---------------------CCCEEEEeccCceEEEEEEcCCccEe---------------------------------
Confidence 8999999999886 689999876432
Q ss_pred ceeeeeeeeecC--CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 251 GKRLHLDYSVGG--HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 251 ~~~~~~~~~~~~--h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
++++- -...|.+++|+ |++++|++.|..++|.||.++...
T Consensus 210 -------~eFRRG~~~~~IySL~Fs---~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 210 -------YEFRRGTYPVSIYSLSFS---PDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred -------eeeeCCceeeEEEEEEEC---CCCCeEEEecCCCeEEEEEecccc
Confidence 23321 13468999999 899999999999999999987644
No 192
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=6.2e-19 Score=145.93 Aligned_cols=234 Identities=17% Similarity=0.240 Sum_probs=161.6
Q ss_pred CceEE--EeCCCCcEEEEECCCC-cE----EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCcc----cc
Q 018858 28 PGFVA--SSGEDGCICWFDLRSK-DV----QLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASW----RP 95 (349)
Q Consensus 28 ~~~l~--t~~~dg~i~vwd~~~~-~~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~----~~ 95 (349)
...++ -++..|.|-||++... ++ +-.+. ....|+.+.|.| |.+.|++++.||.|++|.+..+... .+
T Consensus 591 ~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 591 NKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred cceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 34444 2455689999998753 22 11222 456799999999 7788999999999999999864322 23
Q ss_pred eeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 96 LESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
-..+..|...|+++.|+|- .+.|++++.|-+|++||+++++....+. +|.+.|..++|+|
T Consensus 670 e~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSp------------------ 730 (1012)
T KOG1445|consen 670 EKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSP------------------ 730 (1012)
T ss_pred ceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECC------------------
Confidence 3456678899999999994 4789999999999999999999988999 9999999999999
Q ss_pred CCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceee
Q 018858 175 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
+|+.+++.+.||+|++|..++.+.
T Consensus 731 ------------------dGr~~AtVcKDg~~rVy~Prs~e~-------------------------------------- 754 (1012)
T KOG1445|consen 731 ------------------DGRRIATVCKDGTLRVYEPRSREQ-------------------------------------- 754 (1012)
T ss_pred ------------------CCcceeeeecCceEEEeCCCCCCC--------------------------------------
Confidence 899999999999999999997532
Q ss_pred eeeeeecCC-CcceEEEEEeeecCCccEEEEeeCC----CeEEEEecCCCcceecccccceeeec-cccccceEEEEeec
Q 018858 255 HLDYSVGGH-TAAASCVAFSMFGERGKYLISGGND----KLVKVWDCSRFQGVQTSINNDLLIKN-INLNKKVNWLCTTP 328 (349)
Q Consensus 255 ~~~~~~~~h-~~~i~~i~~~~~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~ 328 (349)
.++.-.+. ...--.|.|. -+|+++++.+.| ..|.+||.++... ..+... ..-...+.--.+.+
T Consensus 755 -pv~Eg~gpvgtRgARi~wa---cdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-------~pl~t~~lDvaps~LvP~YD~ 823 (1012)
T KOG1445|consen 755 -PVYEGKGPVGTRGARILWA---CDGRIVIVVGFDKSSERQVQMYDAQTLDL-------RPLYTQVLDVAPSPLVPHYDY 823 (1012)
T ss_pred -ccccCCCCccCcceeEEEE---ecCcEEEEecccccchhhhhhhhhhhccC-------CcceeeeecccCccccccccC
Confidence 22222211 1122356676 688888877755 5688888766421 111111 11000110011223
Q ss_pred CCCCcEEEeeCCCeEEEeeC
Q 018858 329 TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.+-++++|-.|..|++|.+
T Consensus 824 Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 824 DSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred CCceEEEecCCCceEEEEEe
Confidence 23335666668888888764
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=7.5e-18 Score=143.42 Aligned_cols=233 Identities=15% Similarity=0.119 Sum_probs=162.9
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCc--cccee-eccCcccceEEEEEcc
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPAS--WRPLE-SYNYNKEEINQIVCNP 113 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~-~~~~~~~~v~~~~~~~ 113 (349)
+.+.+|+++........-.-...|.++.|+| +..+++.|..+|+|.+||++.+.. ...+. ....|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4799999987633333333568899999999 556677788999999999997654 22222 2345778999999976
Q ss_pred CCC--EEEEEcCCCcEEEEEcCCceEe-cee----c------cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeE
Q 018858 114 KSS--FLACADDGGDVKIIDIRQHCLY-KSL----R------AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVH 180 (349)
Q Consensus 114 ~~~--~l~~~~~dg~i~i~d~~~~~~~-~~~----~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (349)
+.. -|++++.||.|..|+++.-... ... . ......+++++|.+.
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~----------------------- 358 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT----------------------- 358 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC-----------------------
Confidence 544 4899999999999988743221 110 0 011224556666653
Q ss_pred EeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee
Q 018858 181 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 260 (349)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (349)
+...|++|+.+|.|.--+-...+... ....+....+
T Consensus 359 ------------~p~~FiVGTe~G~v~~~~r~g~~~~~--------------------------------~~~~~~~~~~ 394 (555)
T KOG1587|consen 359 ------------DPNHFIVGTEEGKVYKGCRKGYTPAP--------------------------------EVSYKGHSTF 394 (555)
T ss_pred ------------CCceEEEEcCCcEEEEEeccCCcccc--------------------------------cccccccccc
Confidence 67889999999998663333211000 0001233456
Q ss_pred cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC-CCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeC
Q 018858 261 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 261 ~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
..|.++|+++.++||++ +++++++ |.+++||... .. .++..+..+...+++++|+|.....++++..
T Consensus 395 ~~h~g~v~~v~~nPF~~--k~fls~g-DW~vriWs~~~~~---------~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~ 462 (555)
T KOG1587|consen 395 ITHIGPVYAVSRNPFYP--KNFLSVG-DWTVRIWSEDVIA---------SPLLSLDSSPDYVTDVAWSPTRPAVFATVDG 462 (555)
T ss_pred cccCcceEeeecCCCcc--ceeeeec-cceeEeccccCCC---------CcchhhhhccceeeeeEEcCcCceEEEEEcC
Confidence 67889999999997654 3555555 9999999988 43 5666777778889999999988888999999
Q ss_pred CCeEEEeeCC
Q 018858 340 SKVVKVYSIS 349 (349)
Q Consensus 340 dg~i~iw~~~ 349 (349)
||.+.+|||.
T Consensus 463 ~G~l~iWDLl 472 (555)
T KOG1587|consen 463 DGNLDIWDLL 472 (555)
T ss_pred CCceehhhhh
Confidence 9999999973
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.2e-17 Score=139.77 Aligned_cols=300 Identities=12% Similarity=0.064 Sum_probs=205.7
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCC--ceEEEeCCCCcEEEEECCCCcEEEEee-------------------------
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRP--GFVASSGEDGCICWFDLRSKDVQLVTD------------------------- 55 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~--~~l~t~~~dg~i~vwd~~~~~~~~~~~------------------------- 55 (349)
.++++++.|.+|..+++.+.+.|... .++++++.||.|++||...+.++.++.
T Consensus 45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~ 124 (792)
T KOG1963|consen 45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV 124 (792)
T ss_pred chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence 57888999999999999999988744 467899999999999987654432110
Q ss_pred ------------------------------------------------------------------------------cC
Q 018858 56 ------------------------------------------------------------------------------VG 57 (349)
Q Consensus 56 ------------------------------------------------------------------------------~~ 57 (349)
.|
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H 204 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH 204 (792)
T ss_pred ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence 12
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccC-CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
...+++.+++|+++++|++..||.|.+|.--. .........+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+++
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 33457889999999999999999999995332 22233445566678899999999999999999999999999999888
Q ss_pred EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 137 LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
.+-++ .-.++|..+.++| ++.+.++...|..|.+....+...
T Consensus 285 -kqfLP-RLgs~I~~i~vS~------------------------------------ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 285 -KQFLP-RLGSPILHIVVSP------------------------------------DSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred -ccccc-ccCCeeEEEEEcC------------------------------------CCCeEEEEecCceEEEEeccchhh
Confidence 34444 6778999999999 788888888999999988755433
Q ss_pred eeecC---CC-------CCCccceeeeeccccEEEEee---ee---eecCceeeeeeee----ec----CCCcceEEEEE
Q 018858 217 ISRSK---ST-------TKPLKGSQSTSKVNIRDAEME---IL---DQSGGKRLHLDYS----VG----GHTAAASCVAF 272 (349)
Q Consensus 217 ~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~----~~----~h~~~i~~i~~ 272 (349)
..... .+ .......++++|.-+.++..+ .. +.........+.. .. .+.-.++.++.
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~ 406 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR 406 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh
Confidence 22221 11 223345667777544444321 11 1111111111100 00 12235677777
Q ss_pred eeecCCccEEEEee--------C--CCeEEEEecCCCcceeccccccee-eeccccccceEEEEeecCCC-CcEEEeeCC
Q 018858 273 SMFGERGKYLISGG--------N--DKLVKVWDCSRFQGVQTSINNDLL-IKNINLNKKVNWLCTTPTES-ENLVVCDTS 340 (349)
Q Consensus 273 ~~~~~~~~~l~s~~--------~--d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d 340 (349)
+ ..|.+++|.- . .-.+++|-........ .+. .....|...+...++.++.. ...++++.|
T Consensus 407 ~---~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~-----~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d 478 (792)
T KOG1963|consen 407 S---RFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTF-----ILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD 478 (792)
T ss_pred h---ccceEEEEeeeeehhhhccCceEEEEEEEEcCCccee-----EEEEEEecCCCceeEEEEEecCcccceeEEeccC
Confidence 7 6799999864 2 2357889877654322 111 23346877777766665433 379999999
Q ss_pred CeEEEeeC
Q 018858 341 KVVKVYSI 348 (349)
Q Consensus 341 g~i~iw~~ 348 (349)
|.++||-+
T Consensus 479 g~~KiW~~ 486 (792)
T KOG1963|consen 479 GDFKIWVF 486 (792)
T ss_pred CeEEEEEE
Confidence 99999975
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.7e-18 Score=123.80 Aligned_cols=204 Identities=14% Similarity=0.132 Sum_probs=143.2
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEEccCC-------CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEc
Q 018858 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI 132 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 132 (349)
.|.+-+|+|.++++++|+.+|.|.++.+++. +....+...++|++++..++|+ ..+|++|+. |.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 3556678999999999999999999988641 1223444568899999999998 346666654 99999976
Q ss_pred CCceE------eceec-c-----ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE
Q 018858 133 RQHCL------YKSLR-A-----GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 200 (349)
Q Consensus 133 ~~~~~------~~~~~-~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (349)
+.... +.+.+ + ..-..|.++-..| ..+.++.+
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP------------------------------------~enSi~~A 132 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP------------------------------------SENSILFA 132 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEecc------------------------------------CCCcEEEe
Confidence 53211 11111 0 1112355555555 55666667
Q ss_pred cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCcc
Q 018858 201 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 280 (349)
Q Consensus 201 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~ 280 (349)
+.|+.++-||++++ +....+++|...|.++.-- ....
T Consensus 133 gGD~~~y~~dlE~G----------------------------------------~i~r~~rGHtDYvH~vv~R---~~~~ 169 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDG----------------------------------------RIQREYRGHTDYVHSVVGR---NANG 169 (325)
T ss_pred cCCeEEEEEEecCC----------------------------------------EEEEEEcCCcceeeeeeec---ccCc
Confidence 79999999999986 6678899999999999874 4556
Q ss_pred EEEEeeCCCeEEEEecCCCcceecccccceeeecccccc-ceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 281 YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 281 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+++|++||++|+||.++++..+....-+.......|.+ .|-+++.+. .+|+.| ..-.+.+|.++
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCG-gGp~lslwhLr 235 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCG-GGPKLSLWHLR 235 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEec-CCCceeEEecc
Confidence 789999999999999999987655443333334444444 367777743 366655 45578889875
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=2.1e-18 Score=140.04 Aligned_cols=208 Identities=12% Similarity=0.095 Sum_probs=147.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
...|+.++.||.+.+-+ +.++....+..|.+.+.+-.|+|+|.-|+++++||.|++|.-. |-.. ..+.....+|.
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLR---Stl~Q~~~~v~ 149 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLR---STVVQNEESIR 149 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHH---HHHhhcCceeE
Confidence 35688888899999887 4566677888999999999999999999999999999999854 3222 22222457899
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcc
Q 018858 108 QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDA 187 (349)
Q Consensus 108 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (349)
|++|.|+.+.++.+. .+.+.|=.+.....+-..+ .|++-|.++.|++
T Consensus 150 c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~------------------------------- 196 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-AHDGLVLSLSWST------------------------------- 196 (737)
T ss_pred EEEECCCCCceEEec-CCeEEEeecccccceeEEe-ccCcEEEEeecCc-------------------------------
Confidence 999999987666543 3578887777666667778 8999999999999
Q ss_pred cccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcce
Q 018858 188 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA 267 (349)
Q Consensus 188 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 267 (349)
..+++++|++|-..++||.... .......++.+|.+++|+|+..+++ ++.+ ..+--....+.|
T Consensus 197 -----~s~lI~sgGED~kfKvWD~~G~--~Lf~S~~~ey~ITSva~npd~~~~v--~S~n--------t~R~~~p~~GSi 259 (737)
T KOG1524|consen 197 -----QSNIIASGGEDFRFKIWDAQGA--NLFTSAAEEYAITSVAFNPEKDYLL--WSYN--------TARFSSPRVGSI 259 (737)
T ss_pred -----cccceeecCCceeEEeecccCc--ccccCChhccceeeeeeccccceee--eeee--------eeeecCCCccce
Confidence 7899999999999999998752 1122233445666667777633333 1110 001111234566
Q ss_pred EEEEEeeecCCccEEEEeeCCCeEEE
Q 018858 268 SCVAFSMFGERGKYLISGGNDKLVKV 293 (349)
Q Consensus 268 ~~i~~~~~~~~~~~l~s~~~d~~i~v 293 (349)
..++|+ +||..+++|...|.+.+
T Consensus 260 fnlsWS---~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 260 FNLSWS---ADGTQATCGTSTGQLIV 282 (737)
T ss_pred EEEEEc---CCCceeeccccCceEEE
Confidence 666666 66666666666665544
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=9.5e-19 Score=142.59 Aligned_cols=213 Identities=16% Similarity=0.176 Sum_probs=154.5
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----------cEEEEeecCCCCeEEEEEecCCCEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----------DVQLVTDVGNGPVTSLCFKSGNEDII 74 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~ 74 (349)
-+++.+|++|.++|.|+++.++ +..+++|+.||+|+.|++... .....+.+|...|..+++++....|+
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll 412 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL 412 (577)
T ss_pred eeeeEEEecccCceEEEEecCC-ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee
Confidence 4678899999999999999998 899999999999999966421 22456789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceecc------cccc
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRA------GHSS 147 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~ 147 (349)
+++.||+++.|+...... ..+..... .+....+.+-... ...++....+.-.+++++....+..+.. ....
T Consensus 413 scs~DgTvr~w~~~~~~~-~~f~~~~e-~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~ 490 (577)
T KOG0642|consen 413 SCSSDGTVRLWEPTEESP-CTFGEPKE-HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP 490 (577)
T ss_pred eecCCceEEeeccCCcCc-cccCCccc-cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence 999999999999875432 11222221 2334555554322 2223333333333344443333333320 0012
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
.+.-+.++| +....+++..|+.|+++|..++
T Consensus 491 ~in~vVs~~------------------------------------~~~~~~~~hed~~Ir~~dn~~~------------- 521 (577)
T KOG0642|consen 491 QINKVVSHP------------------------------------TADITFTAHEDRSIRFFDNKTG------------- 521 (577)
T ss_pred ccceEEecC------------------------------------CCCeeEecccCCceeccccccc-------------
Confidence 344455555 6788899999999999999875
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+++....|...++++++. |+|.+|++++.|+.+++|.+...
T Consensus 522 ---------------------------~~l~s~~a~~~svtslai~---~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 522 ---------------------------KILHSMVAHKDSVTSLAID---PNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ---------------------------ccchheeeccceecceeec---CCCceEEeecCCceeehhhccch
Confidence 6667778899999999999 89999999999999999999875
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=1.6e-19 Score=143.76 Aligned_cols=228 Identities=19% Similarity=0.258 Sum_probs=184.3
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
..+.++.+ |.+|+.|+..|.+-.+|..++++...+.. ...|..+.|..+.+++|++- ...++|||-. |....++..
T Consensus 133 Y~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHClk~ 208 (545)
T KOG1272|consen 133 YHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHCLKR 208 (545)
T ss_pred eeeeecCC-ccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEeehhh
Confidence 45678877 89999999999999999999999888874 56789999988888777665 6779999965 444555544
Q ss_pred ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCce
Q 018858 99 YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAF 178 (349)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (349)
. ..|..+.|-|.--+|++++..|.++--|+..|+.+..+. ...+.+..++-+|
T Consensus 209 ~----~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP---------------------- 261 (545)
T KOG1272|consen 209 H----IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNP---------------------- 261 (545)
T ss_pred c----CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCC----------------------
Confidence 2 678889999988889999999999999999999999988 6777888888888
Q ss_pred eEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeee
Q 018858 179 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 258 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
-+..+-+|...|+|.+|..... +++.
T Consensus 262 --------------~NaVih~GhsnGtVSlWSP~sk----------------------------------------ePLv 287 (545)
T KOG1272|consen 262 --------------YNAVIHLGHSNGTVSLWSPNSK----------------------------------------EPLV 287 (545)
T ss_pred --------------ccceEEEcCCCceEEecCCCCc----------------------------------------chHH
Confidence 6778889999999999999874 5666
Q ss_pred eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee
Q 018858 259 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 259 ~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
.+..|.++|.+|++. ++|+|++|.|.|..++|||++...+ +..... .-+...++++. .| +++++
T Consensus 288 KiLcH~g~V~siAv~---~~G~YMaTtG~Dr~~kIWDlR~~~q---------l~t~~t-p~~a~~ls~Sq-kg--lLA~~ 351 (545)
T KOG1272|consen 288 KILCHRGPVSSIAVD---RGGRYMATTGLDRKVKIWDLRNFYQ---------LHTYRT-PHPASNLSLSQ-KG--LLALS 351 (545)
T ss_pred HHHhcCCCcceEEEC---CCCcEEeecccccceeEeeeccccc---------cceeec-CCCcccccccc-cc--ceeee
Confidence 777899999999999 8999999999999999999999742 222222 33556667754 33 55566
Q ss_pred CCCeEEEee
Q 018858 339 TSKVVKVYS 347 (349)
Q Consensus 339 ~dg~i~iw~ 347 (349)
....|.||.
T Consensus 352 ~G~~v~iw~ 360 (545)
T KOG1272|consen 352 YGDHVQIWK 360 (545)
T ss_pred cCCeeeeeh
Confidence 666788884
No 199
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.81 E-value=1.7e-18 Score=132.40 Aligned_cols=307 Identities=12% Similarity=0.112 Sum_probs=199.2
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE-EeCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~ 94 (349)
+.|.-+.|..+.-.+|.....++.|.+|++...+-...++....++.+++|+|+|+.|+. ...+-.|.+|.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~- 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY- 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-
Confidence 456667888774445666788899999999998888889988999999999999976655 456789999999874321
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEcCCCc---EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACADDGGD---VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
.++..+..+..++|+|+|++.+..++... +.+...+....++.++ ...-..+.+.|+|||.|+...|......
T Consensus 128 ---~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~-~dT~DltgieWsPdg~~laVwd~~Leyk 203 (447)
T KOG4497|consen 128 ---LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFK-LDTIDLTGIEWSPDGNWLAVWDNVLEYK 203 (447)
T ss_pred ---EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcC-CCcccccCceECCCCcEEEEecchhhhe
Confidence 12223456788999999999998876432 2233233445556666 5566788999999999998777652222
Q ss_pred --cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC------------------CCCCcccee
Q 018858 172 --QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS------------------TTKPLKGSQ 231 (349)
Q Consensus 172 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------~~~~~~~~~ 231 (349)
.......+..++++| .+++|++|+.|+.+|+.+--+-+....+.. ...-...++
T Consensus 204 v~aYe~~lG~k~v~wsP------~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL 277 (447)
T KOG4497|consen 204 VYAYERGLGLKFVEWSP------CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL 277 (447)
T ss_pred eeeeeeccceeEEEecc------ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence 222335678888988 799999999999998866543211111100 001112233
Q ss_pred eeeccccEEEEeeeeeecCce---eeeeee------eecCCCcceEEEEEeeecCCccEEEEeeCC--CeEEEEecCCCc
Q 018858 232 STSKVNIRDAEMEILDQSGGK---RLHLDY------SVGGHTAAASCVAFSMFGERGKYLISGGND--KLVKVWDCSRFQ 300 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~ 300 (349)
.|.|..-..- .+.....+.. ....+. .+......+.-++|+ +|..|++|-... +.+.+||++..
T Consensus 278 sf~p~~~~a~-~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs---~Ds~y~aTrnd~~PnalW~Wdlq~l- 352 (447)
T KOG4497|consen 278 SFTPTDLEAH-IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS---CDSTYAATRNDKYPNALWLWDLQNL- 352 (447)
T ss_pred ccCCCccccC-ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec---CCceEEeeecCCCCceEEEEechhh-
Confidence 4433211000 0000000000 001111 122234467889999 899999887643 78999999985
Q ss_pred ceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 301 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+........+|....|.|... .|+.+.....+++|..
T Consensus 353 ---------~l~avLiQk~piraf~WdP~~p-rL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 353 ---------KLHAVLIQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAP 390 (447)
T ss_pred ---------hhhhhhhhccceeEEEeCCCCc-eEEEEcCCceEEEEcC
Confidence 3445555667899999999555 4666666667999975
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=2.1e-18 Score=140.06 Aligned_cols=218 Identities=16% Similarity=0.234 Sum_probs=149.9
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeE-EEEEe-------cCCCEEEEEeCCCeEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVT-SLCFK-------SGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~-------~~~~~l~~~~~dg~i~i 84 (349)
-|...|.|+.|+.. ...+.+++.+-.+.-||+.+.. ...+.-....+. .+..- ...+.++.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~-eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSN-EEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeeccccc-ceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 47777889999886 5666665554444444543322 111111111111 11111 13457888999999998
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
.+-. .+.-.....|.+.+.+-.|+|+|.-|+++++||.|++|. ++|-...++. ....+|+|++|.|+
T Consensus 90 l~k~----~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q~~~~v~c~~W~p~------- 156 (737)
T KOG1524|consen 90 LNKS----ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-QNEESIRCARWAPN------- 156 (737)
T ss_pred eccc----chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh-hcCceeEEEEECCC-------
Confidence 8643 244455667889999999999999999999999999998 5665555555 56788999999994
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
..+.+.+.+ +.+.|=.+..+
T Consensus 157 ----------------------------S~~vl~c~g--~h~~IKpL~~n------------------------------ 176 (737)
T KOG1524|consen 157 ----------------------------SNSIVFCQG--GHISIKPLAAN------------------------------ 176 (737)
T ss_pred ----------------------------CCceEEecC--CeEEEeecccc------------------------------
Confidence 445555443 44555444432
Q ss_pred eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEE
Q 018858 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 324 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 324 (349)
..+...++|.+-|.++.|+ +...++++|++|-..+|||-.. ..+.....|..+|+++
T Consensus 177 ----------~k~i~WkAHDGiiL~~~W~---~~s~lI~sgGED~kfKvWD~~G----------~~Lf~S~~~ey~ITSv 233 (737)
T KOG1524|consen 177 ----------SKIIRWRAHDGLVLSLSWS---TQSNIIASGGEDFRFKIWDAQG----------ANLFTSAAEEYAITSV 233 (737)
T ss_pred ----------cceeEEeccCcEEEEeecC---ccccceeecCCceeEEeecccC----------cccccCChhccceeee
Confidence 2334677899999999999 8899999999999999999876 4455555666677777
Q ss_pred Eeec
Q 018858 325 CTTP 328 (349)
Q Consensus 325 ~~~~ 328 (349)
+|+|
T Consensus 234 a~np 237 (737)
T KOG1524|consen 234 AFNP 237 (737)
T ss_pred eecc
Confidence 7766
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=1.3e-17 Score=126.97 Aligned_cols=216 Identities=13% Similarity=0.132 Sum_probs=169.1
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
+..-.++|++.+|+++...+|++-....|.||........+...++..|...|+.+.|+|..+.|++++.|..-++|...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33345799999999999999999999999999998776678888999999999999999999999999999999999984
Q ss_pred -Cc--eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 134 -QH--CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 134 -~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
.+ ++...+. .++...+++.|+| .++.|++|+.-..|.+|-
T Consensus 86 ~~~~WkptlvLl-RiNrAAt~V~WsP------------------------------------~enkFAVgSgar~isVcy 128 (361)
T KOG1523|consen 86 SGGTWKPTLVLL-RINRAATCVKWSP------------------------------------KENKFAVGSGARLISVCY 128 (361)
T ss_pred CCCeeccceeEE-EeccceeeEeecC------------------------------------cCceEEeccCccEEEEEE
Confidence 33 3444455 5888999999999 789999999999999998
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceee-eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL-HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK 289 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~ 289 (349)
++.. ..+ -..+.-+.+...|+++.|+ |++-+|++|+.|+
T Consensus 129 ~E~E-------------------------------------NdWWVsKhikkPirStv~sldWh---pnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 129 YEQE-------------------------------------NDWWVSKHIKKPIRSTVTSLDWH---PNNVLLAAGSTDG 168 (361)
T ss_pred Eecc-------------------------------------cceehhhhhCCccccceeeeecc---CCcceecccccCc
Confidence 8752 111 1122334567889999999 8999999999999
Q ss_pred eEEEEecCCCcce-----e----cccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 290 LVKVWDCSRFQGV-----Q----TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 290 ~i~vwd~~~~~~~-----~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..|||..--.... . ..+.+.++.......+.+..+.|+| .|..|+-.+.|+.+.+=|
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEee
Confidence 9999975322111 0 0111233334445667899999977 888999999999887644
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=1.5e-19 Score=153.65 Aligned_cols=239 Identities=17% Similarity=0.159 Sum_probs=173.7
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
+..+.+|...|+|..|...|.++++|+.|..++||..++. ..+....+|.+.++.++.+.+.-++++++.|..|++|
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 3345679999999999999999999999999999998864 6677888999999999999888899999999999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
.+..+.++..+. +|.+.|++++|+| ..+.+.||++++||
T Consensus 260 rl~~~~pvsvLr-ghtgavtaiafsP----------------------------------------~~sss~dgt~~~wd 298 (1113)
T KOG0644|consen 260 RLPDGAPVSVLR-GHTGAVTAIAFSP----------------------------------------RASSSDDGTCRIWD 298 (1113)
T ss_pred ecCCCchHHHHh-ccccceeeeccCc----------------------------------------cccCCCCCceEecc
Confidence 999999999999 9999999999999 23678899999999
Q ss_pred ccCceeeeecCCC----CCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee
Q 018858 211 IESELNISRSKST----TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 211 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
.+-... .....+ .+..+..+-+...+...+ ++..++.... .....+..+...+.-+..+. .-..+.+++-
T Consensus 299 ~r~~~~-~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tgs~d~ea~n--~e~~~l~~~~~~lif~t~ss--d~~~~~~~ar 372 (1113)
T KOG0644|consen 299 ARLEPR-IYVPRPLKFTEKDLVDSILFENNGDRFL-TGSRDGEARN--HEFEQLAWRSNLLIFVTRSS--DLSSIVVTAR 372 (1113)
T ss_pred cccccc-ccCCCCCCcccccceeeeeccccccccc-cccCCccccc--chhhHhhhhccceEEEeccc--cccccceeee
Confidence 982111 111111 112223333333333333 1111111100 00011111222111111110 1124666777
Q ss_pred CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+..+.+|++.++ .+.....+|...+..+.++|.+.....+++.||+..|||+
T Consensus 373 ~~~~~~vwnl~~g---------~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 373 NDHRLCVWNLYTG---------QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred eeeEeeeeecccc---------hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence 7888999999998 6778888999999999999999989999999999999996
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=2.3e-17 Score=141.02 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=149.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCC---CcEEEEECCCCcE--EEEeecCCCCeEEEEEecCCCEEEEEe-
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVS- 77 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~- 77 (349)
.+...+.+..|...+.+..|+|+ ++.|+..+.+ ..|++||+.+++. +..+.++ ...++|+|+|+.|+.++
T Consensus 192 dg~~~~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~ 267 (429)
T PRK01742 192 DGFNQFIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASS 267 (429)
T ss_pred CCCCceEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEe
Confidence 34556778888889999999999 7777766543 4699999988764 3333333 34689999999988765
Q ss_pred CCCeEEEE--EccCCCcccceeeccCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCc-eEeceeccccccceeEEE
Q 018858 78 SGKEVKSF--DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQ 153 (349)
Q Consensus 78 ~dg~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~ 153 (349)
.+|.+.|| |+.++. . ..+..+...+....|+|+++.|+..+ .+|...+|++... .....+. +.. ....
T Consensus 268 ~~g~~~Iy~~d~~~~~-~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~--~~~--~~~~ 339 (429)
T PRK01742 268 KDGVLNIYVMGANGGT-P---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG--GRG--YSAQ 339 (429)
T ss_pred cCCcEEEEEEECCCCC-e---EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec--CCC--CCcc
Confidence 57765555 555432 2 22333445678899999999877554 5778888876522 1122222 222 3466
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeee
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
|+| +++.++..+.++ +.+||+.++..
T Consensus 340 ~Sp------------------------------------DG~~ia~~~~~~-i~~~Dl~~g~~----------------- 365 (429)
T PRK01742 340 ISA------------------------------------DGKTLVMINGDN-VVKQDLTSGST----------------- 365 (429)
T ss_pred CCC------------------------------------CCCEEEEEcCCC-EEEEECCCCCe-----------------
Confidence 777 788888877765 55689886421
Q ss_pred eccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 234 SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
. .+..+ .....+.|+ |+|++|+.++.++...+|++..... .....
T Consensus 366 ---------------------~---~lt~~-~~~~~~~~s---PdG~~i~~~s~~g~~~~l~~~~~~G-------~~~~~ 410 (429)
T PRK01742 366 ---------------------E---VLSST-FLDESPSIS---PNGIMIIYSSTQGLGKVLQLVSADG-------RFKAR 410 (429)
T ss_pred ---------------------E---EecCC-CCCCCceEC---CCCCEEEEEEcCCCceEEEEEECCC-------CceEE
Confidence 0 11111 112356788 8999999999999888887642110 45556
Q ss_pred ccccccceEEEEeecC
Q 018858 314 NINLNKKVNWLCTTPT 329 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~ 329 (349)
+..|.+.+...+|+|.
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 6678888889999884
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.8e-16 Score=120.55 Aligned_cols=282 Identities=13% Similarity=0.074 Sum_probs=180.9
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-cCCCCeEEEEEecCCC-EEEEEeCCCeEEEEEccCC-Cc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMP-AS 92 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~ 92 (349)
-.+.-++|++. -..++++..|-.|++|+-.. +....++ .....|++++|-|.+. .|+.|+..| |.+|..... ..
T Consensus 99 ~dlr~~aWhqH-~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQH-IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechh-hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 45778899986 66788999999999999766 4334444 2457899999999654 466666544 999976531 11
Q ss_pred cc----------ceeeccCcccceEEEEEccCCCEEEEEcC-CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 93 WR----------PLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 93 ~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
.+ .+...++| ..|++++|++||..+++++- +..|.|||..++..+.... ...+.++-+.|+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSP----- 248 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSP----- 248 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcC-----
Confidence 11 11223444 68999999999999988874 6679999999887665554 4566788899999
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
++.+|+.++-|+..++|.......... .......+....|+|+|++|+
T Consensus 249 -------------------------------dgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 249 -------------------------------DGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred -------------------------------CCCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEE
Confidence 899999999999999996654322221 122234788899999999987
Q ss_pred Eeeeeeec------------Cc-----eeeeeeeeec------C---CCcceEEEEEeeecCCccEEEEeeCCC------
Q 018858 242 EMEILDQS------------GG-----KRLHLDYSVG------G---HTAAASCVAFSMFGERGKYLISGGNDK------ 289 (349)
Q Consensus 242 ~~~~~~~~------------~~-----~~~~~~~~~~------~---h~~~i~~i~~~~~~~~~~~l~s~~~d~------ 289 (349)
.+...... .. ....++..+. + --+.+.+++|+ |.|.+||+.-..+
T Consensus 297 f~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawD---psGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 297 FACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWD---PSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeEC---CCCCEEEEEEcCCchhhhh
Confidence 63211110 00 0111111111 1 13578899999 8999999875443
Q ss_pred --eEEEEecCCCcceecccccceeeeccccccceEEEEeec--CCCCcEEEeeCCCeEEEeeC
Q 018858 290 --LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP--TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 290 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iw~~ 348 (349)
.|.+||.+..... .....-.........+.|.| +++.+|..+=+.|.+.-|++
T Consensus 374 k~~i~~fdtr~sp~v------els~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 374 KLHISRFDTRKSPPV------ELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhcccccCce------EEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 3677877664211 01100011111234455554 45556666666777766654
No 205
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.77 E-value=2.4e-17 Score=133.90 Aligned_cols=138 Identities=17% Similarity=0.280 Sum_probs=114.1
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCC--------------CcE--------------EEEeecCCCCeEEEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRS--------------KDV--------------QLVTDVGNGPVTSLCF 66 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~--------------~~~--------------~~~~~~~~~~v~~~~~ 66 (349)
+..|+|+.|-|.+...++.+-.+|.+++||.+. +.. +..+......|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 468999999997677888888899999997531 111 1111223457888999
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccc
Q 018858 67 KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS 146 (349)
Q Consensus 67 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 146 (349)
+|||++||+.+.||.++|||+.+.+....++.+ -+...|++|+|||++|++|++|.-|.||.+..++++..-. +|.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY---FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-GHk 374 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY---FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-GHK 374 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhh---ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc-ccc
Confidence 999999999999999999999975444444444 4789999999999999999999999999999999999988 999
Q ss_pred cceeEEEEcc
Q 018858 147 SICSSVQFIP 156 (349)
Q Consensus 147 ~~v~~~~~~~ 156 (349)
+.|..++|.|
T Consensus 375 SWVs~VaFDp 384 (636)
T KOG2394|consen 375 SWVSVVAFDP 384 (636)
T ss_pred cceeeEeecc
Confidence 9999999998
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.2e-16 Score=136.66 Aligned_cols=211 Identities=16% Similarity=0.158 Sum_probs=143.1
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEcc
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (349)
+..|.+||.+... ...+..+...+...+|+|+|+.|+.++.+ ..|++||+.+++. ..+..+.+ ....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g---~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRG---HNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCC---ccCceeECC
Confidence 4789999987554 45566678889999999999999988754 4799999987642 23333432 344689999
Q ss_pred CCCEEEEEc-CCCcEEE--EEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccccc
Q 018858 114 KSSFLACAD-DGGDVKI--IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADML 190 (349)
Q Consensus 114 ~~~~l~~~~-~dg~i~i--~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
+++.|+.+. .+|.+.| ||+.+++. ..+. .+...+....|+|
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~wSp---------------------------------- 301 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPSWSP---------------------------------- 301 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEEECC----------------------------------
Confidence 999888764 6776555 56655554 4444 4556678899999
Q ss_pred CCCCcEEEEE-cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEE
Q 018858 191 DKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC 269 (349)
Q Consensus 191 ~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 269 (349)
+++.|+.. ..+|...+|+++... .....+ .+.. ..
T Consensus 302 --DG~~i~f~s~~~g~~~I~~~~~~~---------------------------------------~~~~~l-~~~~--~~ 337 (429)
T PRK01742 302 --DGQSILFTSDRSGSPQVYRMSASG---------------------------------------GGASLV-GGRG--YS 337 (429)
T ss_pred --CCCEEEEEECCCCCceEEEEECCC---------------------------------------CCeEEe-cCCC--CC
Confidence 77766644 467888888876420 000111 2322 34
Q ss_pred EEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 270 i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..|+ |+|++|+..+.++ +.+||+.++.. ......+ ....+.|+| +|++|+.++.++.+.+|.+
T Consensus 338 ~~~S---pDG~~ia~~~~~~-i~~~Dl~~g~~---------~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 338 AQIS---ADGKTLVMINGDN-VVKQDLTSGST---------EVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ccCC---CCCCEEEEEcCCC-EEEEECCCCCe---------EEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEE
Confidence 6788 8999998887765 56699988632 1111111 224567877 8999999999998887763
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.76 E-value=1.4e-16 Score=129.43 Aligned_cols=240 Identities=17% Similarity=0.194 Sum_probs=147.3
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcE----EEEeecCCCCeEEEEE-----ecCCCEEEEEeCCCeEEEEEccCC
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCF-----KSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
...++-. +++|+-.- ...+++|++..+.. +...........+-+| .|.+--++.|-..|.|++.|....
T Consensus 128 ~~~~~~~-gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 128 NTNQSGK-GDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eccccCC-CCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 3334444 44444322 23588888774321 1111111222233334 345666888888899999987652
Q ss_pred Ccccceee-ccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCce-----EeceeccccccceeEEEEccCCCCCCC
Q 018858 91 ASWRPLES-YNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHC-----LYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 91 ~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+..+.+.. ....+..++|+.|-|.+ ..|+.+-.+|.+++||..-.. ....++ ...-..+--. ...
T Consensus 206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k---~~~~f~i~t~-----ksk 277 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK---DGDQFAILTS-----KSK 277 (636)
T ss_pred HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC---CCCeeEEeee-----ecc
Confidence 21111111 11124679999999854 667777889999999864110 000011 0000000000 000
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
...+...--.+....++..+|+| ||++||+.+.||.+||||..+.
T Consensus 278 ~~rNPv~~w~~~~g~in~f~FS~------DG~~LA~VSqDGfLRvF~fdt~----------------------------- 322 (636)
T KOG2394|consen 278 KTRNPVARWHIGEGSINEFAFSP------DGKYLATVSQDGFLRIFDFDTQ----------------------------- 322 (636)
T ss_pred ccCCccceeEeccccccceeEcC------CCceEEEEecCceEEEeeccHH-----------------------------
Confidence 00000000011223667777777 9999999999999999999974
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
+++..++..-+...|+.|+ |||+|+++|++|-.|.||.+... +++..-.+|+..|..
T Consensus 323 -----------eLlg~mkSYFGGLLCvcWS---PDGKyIvtGGEDDLVtVwSf~er---------RVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 323 -----------ELLGVMKSYFGGLLCVCWS---PDGKYIVTGGEDDLVTVWSFEER---------RVVARGQGHKSWVSV 379 (636)
T ss_pred -----------HHHHHHHhhccceEEEEEc---CCccEEEecCCcceEEEEEeccc---------eEEEeccccccceee
Confidence 3444444455788999999 99999999999999999999998 788889999999999
Q ss_pred EEee
Q 018858 324 LCTT 327 (349)
Q Consensus 324 ~~~~ 327 (349)
++|.
T Consensus 380 VaFD 383 (636)
T KOG2394|consen 380 VAFD 383 (636)
T ss_pred Eeec
Confidence 9997
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.4e-16 Score=137.80 Aligned_cols=249 Identities=14% Similarity=0.160 Sum_probs=166.0
Q ss_pred eeeeEEEEec-CCCceEEEeCCCCcEEEEECC-C----CcEEEEee---cC----CCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 16 ATATCCIASR-DRPGFVASSGEDGCICWFDLR-S----KDVQLVTD---VG----NGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 16 ~~i~~~~~~~-~~~~~l~t~~~dg~i~vwd~~-~----~~~~~~~~---~~----~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
..|+.+.+-. ++..++++|+.||.|+||+-. + .+++..+. ++ .+.=.-+.|.....+|++++.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 4578877654 446789999999999999742 2 22332222 11 1111446787777778888878999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCc---eEeceeccccccc--eeEEEEcc
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSI--CSSVQFIP 156 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~--v~~~~~~~ 156 (349)
+|||.+.......+.. +....++++.-+. .|+.+++|..||.|++||.+.. ..+...+ .|+.. |..+.+.+
T Consensus 1190 RIWDa~~E~~~~diP~--~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPY--GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQR 1266 (1387)
T ss_pred EEEecccceeEeeccc--CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeec
Confidence 9999986432222221 2234566665543 4689999999999999999843 2455566 67666 88888888
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
+| . ..|++|+.+|.|++||++....
T Consensus 1267 ~G----------------------------------~-~elvSgs~~G~I~~~DlR~~~~-------------------- 1291 (1387)
T KOG1517|consen 1267 QG----------------------------------L-GELVSGSQDGDIQLLDLRMSSK-------------------- 1291 (1387)
T ss_pred CC----------------------------------C-cceeeeccCCeEEEEecccCcc--------------------
Confidence 42 2 2699999999999999996310
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCC---CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGH---TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
........| .+..+++..+ +....+|+|+. +.|+||++............. .
T Consensus 1292 ------------------e~~~~iv~~~~yGs~lTal~VH---~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~---F 1346 (1387)
T KOG1517|consen 1292 ------------------ETFLTIVAHWEYGSALTALTVH---EHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPG---F 1346 (1387)
T ss_pred ------------------cccceeeeccccCccceeeeec---cCCCeeeecCc-ceEEEEecChhhhcccccCcc---c
Confidence 111111122 2258999999 88899999998 999999998743211000000 1
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.....+.+.+++|+|.. -.|++|+.|..|.||..
T Consensus 1347 ~~q~~gs~scL~FHP~~-~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHR-LLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccCcCCCcceeeecchh-HhhhhccCCceEEEeec
Confidence 11234567999999943 36888889999999864
No 209
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=3.6e-15 Score=123.83 Aligned_cols=235 Identities=15% Similarity=0.187 Sum_probs=147.9
Q ss_pred EEEeCCCCcEEEEECCC-Cc--EEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcccceeeccCcccce
Q 018858 31 VASSGEDGCICWFDLRS-KD--VQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (349)
+++...++.|.+|++.+ ++ .+..+. +......++++|++++|++++ .++.|.+|++............. .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 44446789999999964 43 345554 345677899999999987765 47889999997322222223222 12356
Q ss_pred EEEEEccCCCEEEEEcC-CCcEEEEEcCC-ce---EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEE
Q 018858 107 NQIVCNPKSSFLACADD-GGDVKIIDIRQ-HC---LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHA 181 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (349)
..++++|+++++++++. ++.|.+|++.+ +. .+..+. +......++++|
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p------------------------- 135 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDP------------------------- 135 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCC-------------------------
Confidence 78999999998887764 78899999974 22 222222 223456677777
Q ss_pred eecCcccccCCCCcEEEEE-cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee
Q 018858 182 IAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 260 (349)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (349)
++++++++ ..++.|.+||+++...+.... ......
T Consensus 136 -----------~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~---------------------------------~~~~~~ 171 (330)
T PRK11028 136 -----------DNRTLWVPCLKEDRIRLFTLSDDGHLVAQE---------------------------------PAEVTT 171 (330)
T ss_pred -----------CCCEEEEeeCCCCEEEEEEECCCCcccccC---------------------------------CCceec
Confidence 77777554 467999999997521100000 000011
Q ss_pred cCCCcceEEEEEeeecCCccEEEEeeC-CCeEEEEecCCCcceecccccceeeeccc------cccceEEEEeecCCCCc
Q 018858 261 GGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNIN------LNKKVNWLCTTPTESEN 333 (349)
Q Consensus 261 ~~h~~~i~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~ 333 (349)
.. ......+.|+ |++++++++.+ ++.|.+|+++...... ..+..... +......+.++| ++++
T Consensus 172 ~~-g~~p~~~~~~---pdg~~lyv~~~~~~~v~v~~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~ 241 (330)
T PRK11028 172 VE-GAGPRHMVFH---PNQQYAYCVNELNSSVDVWQLKDPHGEI-----ECVQTLDMMPADFSDTRWAADIHITP-DGRH 241 (330)
T ss_pred CC-CCCCceEEEC---CCCCEEEEEecCCCEEEEEEEeCCCCCE-----EEEEEEecCCCcCCCCccceeEEECC-CCCE
Confidence 11 1235678999 89999988876 8999999997421100 11111111 112233577877 8888
Q ss_pred EEEee-CCCeEEEeeC
Q 018858 334 LVVCD-TSKVVKVYSI 348 (349)
Q Consensus 334 l~~~~-~dg~i~iw~~ 348 (349)
|+++. .++.|.+|++
T Consensus 242 lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 242 LYACDRTASLISVFSV 257 (330)
T ss_pred EEEecCCCCeEEEEEE
Confidence 88885 5789999986
No 210
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=9.3e-17 Score=126.05 Aligned_cols=164 Identities=20% Similarity=0.302 Sum_probs=135.2
Q ss_pred CCCCeEEEEEecCCC-EEEEEeCCCeEEEEEccCCC------cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEE
Q 018858 57 GNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPA------SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (349)
...+|..+.|.++.. .+++|+.|..|++|.+..+. .+..+..+..|...|+++.|+|+|..+|+|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 346889999988776 89999999999999887533 23345567789999999999999999999999999999
Q ss_pred EEcC--------C--------ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC
Q 018858 130 IDIR--------Q--------HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 193 (349)
Q Consensus 130 ~d~~--------~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
|-.. + ....+.+. +|...++.++|+| +
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~------------------------------------d 134 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSP------------------------------------D 134 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccC------------------------------------C
Confidence 9765 2 23445566 7888999999999 8
Q ss_pred CcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEe
Q 018858 194 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS 273 (349)
Q Consensus 194 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~ 273 (349)
++++++++.|..+++||+..+ .....+.+|...+..++|.
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G----------------------------------------~l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAG----------------------------------------QLLAILDDHEHYVQGVAWD 174 (434)
T ss_pred CceeeeeeccceEEEEEeccc----------------------------------------eeEeeccccccccceeecc
Confidence 999999999999999999986 5566777888888888888
Q ss_pred eecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 274 MFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
|-++++++-+.|...+++++....
T Consensus 175 ---pl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 175 ---PLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred ---hhhhhhhhhccCcccceeeeeeee
Confidence 788888888888877777766543
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.74 E-value=1.9e-14 Score=119.41 Aligned_cols=291 Identities=13% Similarity=0.153 Sum_probs=173.3
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 82 (349)
+.+.+.++......-..+.|+|+ ++++++++.||.|.++|+.+++.+.+++.. .....++++++|++++++. ..+.+
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEE
T ss_pred CCeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCce
Confidence 45667778765544444678998 889998999999999999999999998854 4568899999999998876 57899
Q ss_pred EEEEccCCCcccceeeccC----cccceEEEEEccCCCEE-EEEcCCCcEEEEEcCCceEe--ceeccccccceeEEEEc
Q 018858 83 KSFDVHMPASWRPLESYNY----NKEEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLY--KSLRAGHSSICSSVQFI 155 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~ 155 (349)
.++|.++.+..+.+..... ....+..+..+|....+ +.--+.+.|.+.|....+.+ ..+. .........|+
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~d 180 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFD 180 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec--ccccccccccC
Confidence 9999998655554443211 22456677778877744 45555688988898765433 2332 34456778888
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE-cCCCeEEEEEccCceeeeecCC---CCCCcccee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKS---TTKPLKGSQ 231 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~ 231 (349)
| ++++++++ ..+..|-++|.++++....... +...+...+
T Consensus 181 p------------------------------------dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ 224 (369)
T PF02239_consen 181 P------------------------------------DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF 224 (369)
T ss_dssp T------------------------------------TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE
T ss_pred c------------------------------------ccceeeecccccceeEEEeeccceEEEEeeccccccccccccc
Confidence 8 78877664 5677999999998876654322 222222211
Q ss_pred -------eeecc--ccEEEE-eeeeee--cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEe----eCCCeEEEEe
Q 018858 232 -------STSKV--NIRDAE-MEILDQ--SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG----GNDKLVKVWD 295 (349)
Q Consensus 232 -------~~~~~--~~~~~~-~~~~~~--~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~----~~d~~i~vwd 295 (349)
.|... +..... .+.... .....++.++++....+. .-+..+ |+++++.+. ...+.|.++|
T Consensus 225 php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th---P~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 225 PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH---PDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-----TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC---CCCccEEeeccCCCCCceEEEEE
Confidence 22221 222211 121111 122355666667655555 567778 899999988 4558999999
Q ss_pred cCCCcceecccccceeeeccc-cccceEEEEeecCCCCcEEEee--CCCeEEEeeC
Q 018858 296 CSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESENLVVCD--TSKVVKVYSI 348 (349)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~ 348 (349)
.++. +....+.. ....+..+.|++ +|+.+..+. .++.|.+||-
T Consensus 301 ~~tl---------~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 301 KKTL---------KVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp CCGT---------EEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEET
T ss_pred CcCc---------ceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEEC
Confidence 9997 33333322 223488899988 777666654 3347999984
No 212
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.4e-15 Score=128.38 Aligned_cols=226 Identities=11% Similarity=0.059 Sum_probs=147.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC---CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG---EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 79 (349)
.+...+.+..+...+.+.+|+|+ |+.|+..+ .+..|++|++.+++.... ......+...+|+|+|+.|+.. +.+
T Consensus 187 dg~~~~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~ 264 (429)
T PRK03629 187 DGYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKT 264 (429)
T ss_pred CCCCCEEeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCC
Confidence 44556777777788999999999 77776532 345799999988764332 2223344568999999998865 334
Q ss_pred C--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC-Cc--EEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-GD--VKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
| .|++||+++++.. .+..+...+....|+|+++.|+..+.+ +. |+++|+.+++.. .+. ..........|
T Consensus 265 g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~ 338 (429)
T PRK03629 265 GSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQNQDADV 338 (429)
T ss_pred CCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee-cCCCCccCEEE
Confidence 4 5889999875432 222223457789999999988776653 44 555576665442 333 23334566788
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC---CeEEEEEccCceeeeecCCCCCCcccee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (349)
+| +|+.++..+.+ ..|.+||+.++..
T Consensus 339 Sp------------------------------------DG~~Ia~~~~~~g~~~I~~~dl~~g~~--------------- 367 (429)
T PRK03629 339 SS------------------------------------DGKFMVMVSSNGGQQHIAKQDLATGGV--------------- 367 (429)
T ss_pred CC------------------------------------CCCEEEEEEccCCCceEEEEECCCCCe---------------
Confidence 88 78877765433 3578888876421
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCe---EEEEecCCCcceeccccc
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL---VKVWDCSRFQGVQTSINN 308 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~---i~vwd~~~~~~~~~~~~~ 308 (349)
..+... .......|+ |||++|+.++.++. ++++++...
T Consensus 368 --------------------------~~Lt~~-~~~~~p~~S---pDG~~i~~~s~~~~~~~l~~~~~~G~--------- 408 (429)
T PRK03629 368 --------------------------QVLTDT-FLDETPSIA---PNGTMVIYSSSQGMGSVLNLVSTDGR--------- 408 (429)
T ss_pred --------------------------EEeCCC-CCCCCceEC---CCCCEEEEEEcCCCceEEEEEECCCC---------
Confidence 111111 122356788 89999999887754 777787653
Q ss_pred ceeeeccccccceEEEEeec
Q 018858 309 DLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~ 328 (349)
....+..|.+.+...+|+|
T Consensus 409 -~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 -FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -CeEECccCCCCcCCcccCC
Confidence 3445556778888888876
No 213
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.4e-16 Score=122.74 Aligned_cols=246 Identities=10% Similarity=0.059 Sum_probs=171.0
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC---Ccccceeecc-CcccceEEEEEccCCCEEEEEcCCCcE
Q 018858 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP---ASWRPLESYN-YNKEEINQIVCNPKSSFLACADDGGDV 127 (349)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (349)
+.+.+|.+.|.++.|+.++++|++|+.|..+++|.++.. +..+++.... .|...|.|++|.....++++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 345679999999999999999999999999999998742 2224444332 345789999999988999999999999
Q ss_pred EEEEcCCceEeceeccccc---cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC
Q 018858 128 KIIDIRQHCLYKSLRAGHS---SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 204 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 204 (349)
...|+++.+.+..+. |. +.|+.+..+| ..+.|++.+.+|
T Consensus 130 I~HDiEt~qsi~V~~--~~~~~~~VY~m~~~P------------------------------------~DN~~~~~t~~~ 171 (609)
T KOG4227|consen 130 IKHDIETKQSIYVAN--ENNNRGDVYHMDQHP------------------------------------TDNTLIVVTRAK 171 (609)
T ss_pred Eeeecccceeeeeec--ccCcccceeecccCC------------------------------------CCceEEEEecCc
Confidence 999999998887776 43 3788898888 688999999999
Q ss_pred eEEEEEccCceeeeec--CCCCCCccceeeeeccccEEEEeeeeee----cCce-eeeeee------eecCCCcceEEEE
Q 018858 205 VVDVINIESELNISRS--KSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGK-RLHLDY------SVGGHTAAASCVA 271 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~------~~~~h~~~i~~i~ 271 (349)
.|.+||.+..+..... ..........+.|+|....|+...+... +... ....+. .++.....-.+..
T Consensus 172 ~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 172 LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred eEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence 9999999976532222 2223445567788887766654322211 1111 111111 1221122235677
Q ss_pred EeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc-------ceEEEEeecCCCCcEEEeeCCCeEE
Q 018858 272 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-------KVNWLCTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 272 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~~~~~dg~i~ 344 (349)
|+ |+|..|++--....=.+||+.+.. +......|.. .+.+++|. +...+++|+++-.|+
T Consensus 252 ~~---~~G~Q~msiRR~~~P~~~D~~S~R---------~~V~k~D~N~~GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~ 317 (609)
T KOG4227|consen 252 WS---PSGNQFMSIRRGKCPLYFDFISQR---------CFVLKSDHNPNGYCNIKTIKSMTFI--DDYTVATGSDHWGIH 317 (609)
T ss_pred eC---CCCCeehhhhccCCCEEeeeeccc---------ceeEeccCCCCcceeeeeeeeeeee--cceeeeccCcccceE
Confidence 88 899988877666666788888752 2222222322 35566663 334699999999999
Q ss_pred EeeCC
Q 018858 345 VYSIS 349 (349)
Q Consensus 345 iw~~~ 349 (349)
+|.++
T Consensus 318 ~WklP 322 (609)
T KOG4227|consen 318 IWKLP 322 (609)
T ss_pred EEecC
Confidence 99985
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=8.3e-16 Score=120.30 Aligned_cols=253 Identities=11% Similarity=0.109 Sum_probs=171.6
Q ss_pred ceeeeEEEEecCCC-ceEEEeCCCCcEEEEECCCCcEEE------EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 15 KATATCCIASRDRP-GFVASSGEDGCICWFDLRSKDVQL------VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 15 ~~~i~~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
...|..++|.-++. +.+...+.+..+..+.+....... ......++|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 45677788875532 334444466677777776554432 233445677776654 346888888999999998
Q ss_pred cCCCcc-cceeeccCcccceEEEEEccCC-CEEEEEcCC--CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 88 HMPASW-RPLESYNYNKEEINQIVCNPKS-SFLACADDG--GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 88 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+.+... ..+..+..+ ..+..+.-++.. ..+++|+.. ..+.+||+.+.+.+.+-+ .-...-
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK-NvpnD~-------------- 196 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK-NVPNDR-------------- 196 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc-CCCCcc--------------
Confidence 854211 112222222 456666666655 455668888 789999999876665544 111100
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
..+..+.++..+.|.+ +.....|++++.-+.+++||.+.++
T Consensus 197 -------L~LrVPvW~tdi~Fl~----g~~~~~fat~T~~hqvR~YDt~~qR---------------------------- 237 (412)
T KOG3881|consen 197 -------LGLRVPVWITDIRFLE----GSPNYKFATITRYHQVRLYDTRHQR---------------------------- 237 (412)
T ss_pred -------ccceeeeeeccceecC----CCCCceEEEEecceeEEEecCcccC----------------------------
Confidence 0011122333334433 0126789999999999999999753
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee-ccccccceE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVN 322 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~ 322 (349)
+++..+.--+.+++++... |.++++++|..-+.+..||++.+ .++.. +.+..+.|.
T Consensus 238 -----------RPV~~fd~~E~~is~~~l~---p~gn~Iy~gn~~g~l~~FD~r~~---------kl~g~~~kg~tGsir 294 (412)
T KOG3881|consen 238 -----------RPVAQFDFLENPISSTGLT---PSGNFIYTGNTKGQLAKFDLRGG---------KLLGCGLKGITGSIR 294 (412)
T ss_pred -----------cceeEeccccCcceeeeec---CCCcEEEEecccchhheecccCc---------eeeccccCCccCCcc
Confidence 3444444446789999999 89999999999999999999998 45544 778899999
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++..+| ...+|++||-|..++|+|+
T Consensus 295 sih~hp-~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 295 SIHCHP-THPVLASCGLDRYVRIHDI 319 (412)
T ss_pred eEEEcC-CCceEEeeccceeEEEeec
Confidence 999988 6679999999999999996
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=5.6e-15 Score=112.77 Aligned_cols=235 Identities=12% Similarity=0.188 Sum_probs=153.5
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCC--eEEEEEecCCCEEEE-EeCC------CeEEEEEcc
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP--VTSLCFKSGNEDIIY-VSSG------KEVKSFDVH 88 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~-~~~d------g~i~iwd~~ 88 (349)
...++|+.| ..-++.|..+| .+||+.+.-+....-+.+.+. +..+-| ..++++. |+.+ ..|.|||=.
T Consensus 8 ~lsvs~NQD-~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQD-HSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEccC-CceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 344899987 66677766655 899998764433222223322 222222 2345544 3333 479999943
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC-CceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
.. +++..+. ...+|..+.+.++ .+++.- .+.|++|... +.+.+..+. ...++---+++.|.
T Consensus 84 k~---~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~e-t~~NPkGlC~~~~~---------- 145 (346)
T KOG2111|consen 84 KE---RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIE-TRSNPKGLCSLCPT---------- 145 (346)
T ss_pred cC---cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeee-cccCCCceEeecCC----------
Confidence 32 3333332 2478999999765 555554 4689999987 555555554 22211112333331
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEE-EcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.+..+||. |..-|.|.|-|+...+
T Consensus 146 ------------------------~~k~~LafPg~k~GqvQi~dL~~~~------------------------------- 170 (346)
T KOG2111|consen 146 ------------------------SNKSLLAFPGFKTGQVQIVDLASTK------------------------------- 170 (346)
T ss_pred ------------------------CCceEEEcCCCccceEEEEEhhhcC-------------------------------
Confidence 03445554 4467999999998631
Q ss_pred eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCe-EEEEecCCCcceecccccceeeeccc--cccceEE
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNIN--LNKKVNW 323 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 323 (349)
......+.+|.+.|.+++.+ .+|..+||+|..|+ |||||..+++ ++..+.. ....|.+
T Consensus 171 -------~~~p~~I~AH~s~Iacv~Ln---~~Gt~vATaStkGTLIRIFdt~~g~---------~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 171 -------PNAPSIINAHDSDIACVALN---LQGTLVATASTKGTLIRIFDTEDGT---------LLQELRRGVDRADIYC 231 (346)
T ss_pred -------cCCceEEEcccCceeEEEEc---CCccEEEEeccCcEEEEEEEcCCCc---------EeeeeecCCchheEEE
Confidence 01235678899999999999 89999999999887 7999999984 4433332 4568999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++|+| ++.+|+++|+-|+++||.++
T Consensus 232 iaFSp-~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 232 IAFSP-NSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred EEeCC-CccEEEEEcCCCeEEEEEee
Confidence 99988 88899999999999999863
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=4.4e-18 Score=135.70 Aligned_cols=195 Identities=13% Similarity=0.185 Sum_probs=161.4
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
......+.++.+|.+++.|+..|.|-.+|..+++....+.. ...|.++.|-.+.++||++ ....++||| ..|..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtE 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTE 202 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcE
Confidence 44567889999999999999999999999998654433333 3678889998887777765 557899999 45666
Q ss_pred eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee
Q 018858 138 YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 217 (349)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 217 (349)
+..++ ....|..+.|.| ..-+|++++..|.++.-|+..+
T Consensus 203 lHClk--~~~~v~rLeFLP------------------------------------yHfLL~~~~~~G~L~Y~DVS~G--- 241 (545)
T KOG1272|consen 203 LHCLK--RHIRVARLEFLP------------------------------------YHFLLVAASEAGFLKYQDVSTG--- 241 (545)
T ss_pred Eeehh--hcCchhhhcccc------------------------------------hhheeeecccCCceEEEeechh---
Confidence 67776 456788899998 5667888899999999999986
Q ss_pred eecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 218 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
+++..+....+.+..+.-+ |-+..+-+|...|+|.+|...
T Consensus 242 -------------------------------------klVa~~~t~~G~~~vm~qN---P~NaVih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 242 -------------------------------------KLVASIRTGAGRTDVMKQN---PYNAVIHLGHSNGTVSLWSPN 281 (545)
T ss_pred -------------------------------------hhhHHHHccCCccchhhcC---CccceEEEcCCCceEEecCCC
Confidence 5555666666778888888 777889999999999999999
Q ss_pred CCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 298 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+. .++..+..|.++|.++++.+ +|.|++|+|.|..++|||++
T Consensus 282 sk---------ePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 282 SK---------EPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred Cc---------chHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeec
Confidence 87 66778889999999999988 99999999999999999985
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.1e-15 Score=119.66 Aligned_cols=206 Identities=13% Similarity=0.089 Sum_probs=153.6
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEecCCCE-EEEEeCC--CeEE
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGNED-IIYVSSG--KEVK 83 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d--g~i~ 83 (349)
.....++|..+... ...|++|-.+|.+.+|..+.+. .+..+..+ .++..+.-++...+ +++|+.. ..+.
T Consensus 101 ~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred cccccccccchhhc---CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccccee
Confidence 34455666666554 2478888889999999988443 22333333 45666766665555 5558888 7899
Q ss_pred EEEccCCCcccceeeccCc------ccceEEEEEccC--CCEEEEEcCCCcEEEEEcCC-ceEeceeccccccceeEEEE
Q 018858 84 SFDVHMPASWRPLESYNYN------KEEINQIVCNPK--SSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~ 154 (349)
+||++..+.+..-+..+.. .-.++++.|-+. ...||+++.-+.+++||.+. .+++..+. ....+++++..
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l 255 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGL 255 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeeee
Confidence 9999865322221211110 124678889887 78999999999999999994 45677777 67788999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
.| .++.+++|..-|.+..||++.+.
T Consensus 256 ~p------------------------------------~gn~Iy~gn~~g~l~~FD~r~~k------------------- 280 (412)
T KOG3881|consen 256 TP------------------------------------SGNFIYTGNTKGQLAKFDLRGGK------------------- 280 (412)
T ss_pred cC------------------------------------CCcEEEEecccchhheecccCce-------------------
Confidence 88 89999999999999999999852
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.....+.+-.+.|++|..+ |.+++++++|-|..|||+|+++.
T Consensus 281 --------------------l~g~~~kg~tGsirsih~h---p~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 281 --------------------LLGCGLKGITGSIRSIHCH---PTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred --------------------eeccccCCccCCcceEEEc---CCCceEEeeccceeEEEeecccc
Confidence 2223467778999999999 88999999999999999999995
No 218
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.7e-17 Score=132.20 Aligned_cols=185 Identities=17% Similarity=0.242 Sum_probs=142.5
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCC
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
..+.+|.+-|.++.|+.+|.+|++|+.|-.+.|||.-..+++..+..+|...|.++.|-|.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~------------------- 104 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPY------------------- 104 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeecc-------------------
Confidence 4577899999999999999999999999999999999888888887799999999999993
Q ss_pred ceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeee
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL 256 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
.+++++++|..|..|++||+...+.. +........
T Consensus 105 ---------------tnnriv~sgAgDk~i~lfdl~~~~~~------------------------------~~d~~~~~~ 139 (758)
T KOG1310|consen 105 ---------------TNNRIVLSGAGDKLIKLFDLDSSKEG------------------------------GMDHGMEET 139 (758)
T ss_pred ---------------CCCeEEEeccCcceEEEEeccccccc------------------------------ccccCccch
Confidence 15778899999999999999852110 000111234
Q ss_pred eeeecCCCcceEEEEEeeecCCc-cEEEEeeCCCeEEEEecCCCcceeccc-ccceeeeccccccceEEEEeecCCCCcE
Q 018858 257 DYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSI-NNDLLIKNINLNKKVNWLCTTPTESENL 334 (349)
Q Consensus 257 ~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l 334 (349)
...+..|...|..|+.. |++ ..+.++++||+|+-||++......... ....+......--...+++++|.+..+|
T Consensus 140 ~~~~~cht~rVKria~~---p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~l 216 (758)
T KOG1310|consen 140 TRCWSCHTDRVKRIATA---PNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYL 216 (758)
T ss_pred hhhhhhhhhhhhheecC---CCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceE
Confidence 45567799999999998 666 789999999999999998743221111 1111222222334567899999999999
Q ss_pred EEeeCCCeEEEeeC
Q 018858 335 VVCDTSKVVKVYSI 348 (349)
Q Consensus 335 ~~~~~dg~i~iw~~ 348 (349)
++|+.|--.++||.
T Consensus 217 aVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 217 AVGGSDPFARLYDR 230 (758)
T ss_pred EecCCCchhhhhhh
Confidence 99999999999984
No 219
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=2.1e-16 Score=117.36 Aligned_cols=161 Identities=16% Similarity=0.215 Sum_probs=125.4
Q ss_pred CceeeeEEEEecCCCc--eEEEeCCCCcEEEEECCCCcEE----------EEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 14 HKATATCCIASRDRPG--FVASSGEDGCICWFDLRSKDVQ----------LVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~--~l~t~~~dg~i~vwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
..+.+.|..+.-..+. +++.|.++|.+.+||+.++..+ .....|.++|.++.+.+.-+.=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 3456777775443333 3667888999999999987432 233458899999999887666677888888
Q ss_pred EEEEEccCCC-cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 82 VKSFDVHMPA-SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+..|++.... ....-....-..-.+..+.+-||++.+|+++.|+.|++|..++..++..++ .|...|.+++|+|
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfsp---- 303 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSP---- 303 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCC----
Confidence 9999887431 111111111113468889999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEc
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 211 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 211 (349)
+...+|.++.|++|.+|++
T Consensus 304 --------------------------------d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 --------------------------------DCELMAAASKDARISLWKL 322 (323)
T ss_pred --------------------------------CCchhhhccCCceEEeeec
Confidence 6789999999999999986
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.1e-14 Score=125.05 Aligned_cols=226 Identities=12% Similarity=0.114 Sum_probs=145.3
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCC---CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE-EeCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d 79 (349)
.+...+.+..|...+.+.+|+|+ ++.|+..+. +..|++||+.+++... +....+.....+|+|+|+.|+. .+.+
T Consensus 192 ~g~~~~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 192 DGYNPQTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred CCCCceEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCC
Confidence 45567778888888999999998 777776653 3469999998877533 3333445557899999998764 4555
Q ss_pred C--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCc--EEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGD--VKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
| .|++||+.+++. . .+..+.......+|+|++++|+..+. +|. |+++|+.+++... +. .........+|
T Consensus 270 g~~~Iy~~d~~~g~~-~---~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt-~~g~~~~~~~~ 343 (433)
T PRK04922 270 GNPEIYVMDLGSRQL-T---RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT-FQGNYNARASV 343 (433)
T ss_pred CCceEEEEECCCCCe-E---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee-cCCCCccCEEE
Confidence 4 699999987642 2 22223334567899999998887653 444 7777776665432 22 12233456788
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC---eEEEEEccCceeeeecCCCCCCcccee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (349)
+| +++.++..+.++ .|.+||+.++..
T Consensus 344 Sp------------------------------------DG~~Ia~~~~~~~~~~I~v~d~~~g~~--------------- 372 (433)
T PRK04922 344 SP------------------------------------DGKKIAMVHGSGGQYRIAVMDLSTGSV--------------- 372 (433)
T ss_pred CC------------------------------------CCCEEEEEECCCCceeEEEEECCCCCe---------------
Confidence 88 788887655332 688999876421
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC---CeEEEEecCCCcceeccccc
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINN 308 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~ 308 (349)
..+. +........|+ |||++++..+.+ ..|+++++...
T Consensus 373 --------------------------~~Lt-~~~~~~~p~~s---pdG~~i~~~s~~~g~~~L~~~~~~g~--------- 413 (433)
T PRK04922 373 --------------------------RTLT-PGSLDESPSFA---PNGSMVLYATREGGRGVLAAVSTDGR--------- 413 (433)
T ss_pred --------------------------EECC-CCCCCCCceEC---CCCCEEEEEEecCCceEEEEEECCCC---------
Confidence 1121 11123346788 899988776643 46888888653
Q ss_pred ceeeeccccccceEEEEeec
Q 018858 309 DLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~ 328 (349)
....+..+.+.+...+|+|
T Consensus 414 -~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 -VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -ceEEcccCCCCCCCCccCC
Confidence 2333334455666667765
No 221
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=8.2e-15 Score=120.39 Aligned_cols=252 Identities=14% Similarity=0.169 Sum_probs=170.0
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
+++.|. |...-+.|..+||+...++||..--.|++||+....+...-......|.-.-++.|-..++.--.|..|.+..
T Consensus 44 LiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 44 LIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred HHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 344443 7778889999999444467888889999999987654322222234455555565555566666677776543
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
-- | ....+. + ...-..++++.-..-|++++....|+-++++.|.-+..+. ...+.++++..++
T Consensus 123 k~-G-~hy~~R-I---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~---------- 185 (703)
T KOG2321|consen 123 KY-G-RHYRTR-I---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINE---------- 185 (703)
T ss_pred hc-C-eeeeee-c---CcCCccccccCCCccEEEeecCcceEEEEccccccccccc-cccccceeeeecC----------
Confidence 21 1 011111 1 1233456665434334444455679999999999999888 6678899999988
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
...+|++|+.+|.|.+||.+....+..+.
T Consensus 186 --------------------------~hgLla~Gt~~g~VEfwDpR~ksrv~~l~------------------------- 214 (703)
T KOG2321|consen 186 --------------------------EHGLLACGTEDGVVEFWDPRDKSRVGTLD------------------------- 214 (703)
T ss_pred --------------------------ccceEEecccCceEEEecchhhhhheeee-------------------------
Confidence 67889999999999999999753222211
Q ss_pred eecCceeeeeeeeecCCC-----cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 247 DQSGGKRLHLDYSVGGHT-----AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~-----~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
....+..|. ..|+++.|+ .+|-.+++|..+|.+.|||++..+ +++..-.+..-+|
T Consensus 215 ---------~~~~v~s~pg~~~~~svTal~F~---d~gL~~aVGts~G~v~iyDLRa~~--------pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 215 ---------AASSVNSHPGGDAAPSVTALKFR---DDGLHVAVGTSTGSVLIYDLRASK--------PLLVKDHGYELPI 274 (703)
T ss_pred ---------cccccCCCccccccCcceEEEec---CCceeEEeeccCCcEEEEEcccCC--------ceeecccCCccce
Confidence 111222232 359999999 779999999999999999999974 4555555566689
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..+.|.+.+.+--+...+...++|||
T Consensus 275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd 300 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSMDKRILKIWD 300 (703)
T ss_pred eeecccccCCCceEEecchHHhhhcc
Confidence 99999876554445555667899997
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.3e-14 Score=122.61 Aligned_cols=167 Identities=12% Similarity=0.093 Sum_probs=108.6
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCC---CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE-EeCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d 79 (349)
.+...+.+..+...+.+.+|+|+ ++.|+..+. ...|++||+.+++... +....+.+...+|+|+|+.|+. .+.+
T Consensus 184 dG~~~~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 184 DGQNAQSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred CCCCceEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccC
Confidence 45556777778889999999998 777765543 2459999999887543 3333455668899999998875 5667
Q ss_pred CeEEEEEc--cCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCcEEEEEc--CCceEeceeccccccceeEEEE
Q 018858 80 KEVKSFDV--HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDI--RQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
|...+|.+ ..+. ...+..+........|+|||+.|+..+. +|...+|.+ .+++.. .+. .........+|
T Consensus 262 g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt-~~g~~~~~~~~ 335 (427)
T PRK02889 262 GNSQIYTVNADGSG----LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVT-FTGSYNTSPRI 335 (427)
T ss_pred CCceEEEEECCCCC----cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEe-cCCCCcCceEE
Confidence 77666654 3332 2222223344567889999998876554 455555544 444332 222 12223345678
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC---eEEEEEccCc
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESE 214 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~ 214 (349)
+| +|++++..+.++ .|.+||+.++
T Consensus 336 Sp------------------------------------DG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 336 SP------------------------------------DGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CC------------------------------------CCCEEEEEEccCCcEEEEEEECCCC
Confidence 88 788887766544 6899998864
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=9.9e-14 Score=118.55 Aligned_cols=212 Identities=14% Similarity=0.151 Sum_probs=136.9
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC---CCeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
..|.+||.+.... ..+..+...+...+|+|+|+.|+..+. +..|.+|++.+++. +.+..+. .....++|+||
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~---~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFP---RHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCC---CCcCCeEECCC
Confidence 4789999875544 334446678999999999999987653 35799999987642 3333333 33456899999
Q ss_pred CCEEEEE-cCCC--cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 115 SSFLACA-DDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 115 ~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
|+.|+.. +.+| .|++||+.+++...... +...+....|+|
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSP----------------------------------- 296 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFP----------------------------------- 296 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECC-----------------------------------
Confidence 9988754 4444 49999998876544333 445677889999
Q ss_pred CCCcEEEEEcC-CCeEEEE--EccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 192 KTNKICVVAKG-DGVVDVI--NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 192 ~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
+++.|+..+. ++...+| |+.++. ...+..+.....
T Consensus 297 -DG~~I~f~s~~~g~~~Iy~~d~~~g~-----------------------------------------~~~lt~~~~~~~ 334 (429)
T PRK03629 297 -DSQNLAYTSDQAGRPQVYKVNINGGA-----------------------------------------PQRITWEGSQNQ 334 (429)
T ss_pred -CCCEEEEEeCCCCCceEEEEECCCCC-----------------------------------------eEEeecCCCCcc
Confidence 7887766654 3444455 554321 111222223345
Q ss_pred EEEEeeecCCccEEEEeeCC---CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCe---
Q 018858 269 CVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV--- 342 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--- 342 (349)
...|+ |||++|+..+.+ ..|++||+.+++. ..+ ...+ ......|+| ||+.|+.++.++.
T Consensus 335 ~~~~S---pDG~~Ia~~~~~~g~~~I~~~dl~~g~~-------~~L--t~~~--~~~~p~~Sp-DG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 335 DADVS---SDGKFMVMVSSNGGQQHIAKQDLATGGV-------QVL--TDTF--LDETPSIAP-NGTMVIYSSSQGMGSV 399 (429)
T ss_pred CEEEC---CCCCEEEEEEccCCCceEEEEECCCCCe-------EEe--CCCC--CCCCceECC-CCCEEEEEEcCCCceE
Confidence 67888 899988776543 4588999987632 111 1111 223567877 8888888887754
Q ss_pred EEEeeC
Q 018858 343 VKVYSI 348 (349)
Q Consensus 343 i~iw~~ 348 (349)
+.++++
T Consensus 400 l~~~~~ 405 (429)
T PRK03629 400 LNLVST 405 (429)
T ss_pred EEEEEC
Confidence 566654
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=4.7e-14 Score=121.24 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=101.3
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC---CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE-EeCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG---EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d 79 (349)
.+...+.+..|...+.+.+|+|+ ++.|+..+ .+..|++||+.+++.. .+..+.+.+...+|+|+|+.|+. .+.+
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecC
Confidence 35567788888899999999998 77776654 2468999999887753 34445667788999999998764 4555
Q ss_pred C--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CC--cEEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
+ .|.+||+.+++. . .+..+........|+|+++.|+..+. +| .|+++|+..++.. .+. .....+....|
T Consensus 268 g~~~Iy~~d~~~~~~-~---~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt-~~~~~~~~~~~ 341 (435)
T PRK05137 268 GNTDIYTMDLRSGTT-T---RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RIS-FGGGRYSTPVW 341 (435)
T ss_pred CCceEEEEECCCCce-E---EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eee-cCCCcccCeEE
Confidence 5 477778876542 2 22223345667899999998887663 33 5888888766543 333 23445666788
Q ss_pred cc
Q 018858 155 IP 156 (349)
Q Consensus 155 ~~ 156 (349)
+|
T Consensus 342 Sp 343 (435)
T PRK05137 342 SP 343 (435)
T ss_pred CC
Confidence 88
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1e-13 Score=119.20 Aligned_cols=212 Identities=14% Similarity=0.122 Sum_probs=138.5
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC---CCeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
..|.++|.+... ...+..+...+...+|+|+|+.|+..+. +..|.+||+.+++. ..+.. +...+...+|+|+
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~---~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGN---FPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeec---CCCcccCcEECCC
Confidence 478899986444 4556668889999999999999988764 46899999987643 23332 3356678899999
Q ss_pred CCEEE-EEcCCCc--EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 115 SSFLA-CADDGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 115 ~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
|+.|+ +.+.++. |++||+.+++.. .+. .+........|+|
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt-~~~~~~~~~~~sp----------------------------------- 299 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTT-RLT-DSPAIDTSPSYSP----------------------------------- 299 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceE-Ecc-CCCCccCceeEcC-----------------------------------
Confidence 98775 4455554 888898877653 344 3455566788888
Q ss_pred CCCcEEEEEc-CCC--eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 192 KTNKICVVAK-GDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 192 ~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
+++.++..+ .+| .|.++|+..+. ...+..+...+.
T Consensus 300 -DG~~i~f~s~~~g~~~Iy~~d~~g~~-----------------------------------------~~~lt~~~~~~~ 337 (435)
T PRK05137 300 -DGSQIVFESDRSGSPQLYVMNADGSN-----------------------------------------PRRISFGGGRYS 337 (435)
T ss_pred -CCCEEEEEECCCCCCeEEEEECCCCC-----------------------------------------eEEeecCCCccc
Confidence 788777655 333 57777776531 112222234456
Q ss_pred EEEEeeecCCccEEEEeeCC---CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC-----
Q 018858 269 CVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS----- 340 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----- 340 (349)
...|+ |+|++|+..+.+ ..|.+||+..+.. .. +. ....+....|+| ||+.|+..+.+
T Consensus 338 ~~~~S---pdG~~ia~~~~~~~~~~i~~~d~~~~~~-------~~---lt-~~~~~~~p~~sp-DG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 338 TPVWS---PRGDLIAFTKQGGGQFSIGVMKPDGSGE-------RI---LT-SGFLVEGPTWAP-NGRVIMFFRQTPGSGG 402 (435)
T ss_pred CeEEC---CCCCEEEEEEcCCCceEEEEEECCCCce-------Ee---cc-CCCCCCCCeECC-CCCEEEEEEccCCCCC
Confidence 67888 899988876543 3688888765421 11 11 122456778888 78777665432
Q ss_pred -CeEEEeeC
Q 018858 341 -KVVKVYSI 348 (349)
Q Consensus 341 -g~i~iw~~ 348 (349)
..+++.++
T Consensus 403 ~~~L~~~dl 411 (435)
T PRK05137 403 APKLYTVDL 411 (435)
T ss_pred cceEEEEEC
Confidence 24666654
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.2e-13 Score=107.39 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=106.2
Q ss_pred CCCeeeeC-CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----cE----------EEEeecCCCCeEEEEEecCC
Q 018858 6 AKPRRLRG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DV----------QLVTDVGNGPVTSLCFKSGN 70 (349)
Q Consensus 6 ~~~~~l~~-h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~~----------~~~~~~~~~~v~~~~~~~~~ 70 (349)
.....|+. .+..|+|++|-|..+..|+.|+. +-|.+|..... +. +..-++| .+|++++|.+||
T Consensus 130 t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg 207 (445)
T KOG2139|consen 130 TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG 207 (445)
T ss_pred CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC
Confidence 44555553 35679999999987788888886 45999986521 11 1122334 689999999999
Q ss_pred CEEEEEeC-CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEeceeccccccc
Q 018858 71 EDIIYVSS-GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSI 148 (349)
Q Consensus 71 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~ 148 (349)
..+++++. |..|.|||..++...... . ...+.++-+.|+||+.+|+++.-|+..++|+... ....+- . ...+.
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~-~--~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw-~-lgsgr 282 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLI-P--KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW-I-LGSGR 282 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCccccc-c--cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce-e-ccCCc
Confidence 99999986 578999999987654433 1 1246788999999999999999999999996543 333222 2 23458
Q ss_pred eeEEEEccCC
Q 018858 149 CSSVQFIPWK 158 (349)
Q Consensus 149 v~~~~~~~~~ 158 (349)
|...+|+|.|
T Consensus 283 vqtacWspcG 292 (445)
T KOG2139|consen 283 VQTACWSPCG 292 (445)
T ss_pred eeeeeecCCC
Confidence 9999999953
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=4.3e-13 Score=102.64 Aligned_cols=178 Identities=15% Similarity=0.222 Sum_probs=130.0
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC-CCcccceeeccCcccceEEEEEccCCC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNPKSS 116 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~ 116 (349)
..+.|||-...+++.++. ...+|.++.+.++ .|++.- .+.|+||.+.+ .+....+.+.... ..+.+++-+.+..
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NP-kGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP-KGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCC-CceEeecCCCCce
Confidence 469999977777777776 5688999999854 566655 67799999884 3444444443322 3333333333334
Q ss_pred EEEE-EcCCCcEEEEEcCCceE--eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC
Q 018858 117 FLAC-ADDGGDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 193 (349)
Q Consensus 117 ~l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
+||. |-.-|.|.|-|+...+. ...+. .|.+.|.|++.+. +
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~------------------------------------~ 192 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNL------------------------------------Q 192 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcC------------------------------------C
Confidence 5554 44578999999986554 35566 8999999999998 7
Q ss_pred CcEEEEEcCCCe-EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC--CCcceEEE
Q 018858 194 NKICVVAKGDGV-VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG--HTAAASCV 270 (349)
Q Consensus 194 ~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~i 270 (349)
|..+|+++..|+ |||||..++. ++.+++. ....|+++
T Consensus 193 Gt~vATaStkGTLIRIFdt~~g~----------------------------------------~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 193 GTLVATASTKGTLIRIFDTEDGT----------------------------------------LLQELRRGVDRADIYCI 232 (346)
T ss_pred ccEEEEeccCcEEEEEEEcCCCc----------------------------------------EeeeeecCCchheEEEE
Confidence 999999999986 6899999863 3333331 24579999
Q ss_pred EEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 271 AFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+|+ |+..+|+++|.-|+|.||.++...
T Consensus 233 aFS---p~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 233 AFS---PNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EeC---CCccEEEEEcCCCeEEEEEeecCC
Confidence 999 899999999999999999987643
No 228
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.67 E-value=9.1e-15 Score=112.80 Aligned_cols=255 Identities=16% Similarity=0.220 Sum_probs=187.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC-CCcEEEEee-cCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
....++.++||.+.|++...-|. ..-+++.+.|.+++||--. .++.-..+. ....+++++.+.++...|+.+-..|+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred chhhhhhhcCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 34567889999999999888887 6789999999999999543 344322222 24578999999999999999999999
Q ss_pred EEEEEccCC-CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 82 VKSFDVHMP-ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+.-+.+... .....++.+..|...+..+-|+....++++.+.|..+.---.+.+..+..+. .....+++.+.-
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~~~~~t~~~~d~---- 165 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--FETPASALQFDA---- 165 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE--eeccCCCCceee----
Confidence 998877531 1123344556788899999999888899999998877544444544433222 111122222211
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
.+..+|...|.|..-.+..
T Consensus 166 ----------------------------------~~~fvGd~~gqvt~lr~~~--------------------------- 184 (404)
T KOG1409|consen 166 ----------------------------------LYAFVGDHSGQITMLKLEQ--------------------------- 184 (404)
T ss_pred ----------------------------------EEEEecccccceEEEEEee---------------------------
Confidence 1455666667666655542
Q ss_pred EEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 241 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
....++.++.+|.+.+.++.|. +..+.|.+|..|..+.+||+...+ .......+|...
T Consensus 185 -----------~~~~~i~~~~~h~~~~~~l~Wd---~~~~~LfSg~~d~~vi~wdigg~~--------g~~~el~gh~~k 242 (404)
T KOG1409|consen 185 -----------NGCQLITTFNGHTGEVTCLKWD---PGQRLLFSGASDHSVIMWDIGGRK--------GTAYELQGHNDK 242 (404)
T ss_pred -----------cCCceEEEEcCcccceEEEEEc---CCCcEEEeccccCceEEEeccCCc--------ceeeeeccchhh
Confidence 1236778899999999999999 888999999999999999998764 455677889999
Q ss_pred eEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 321 VNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|..+...+ .-+.|++++.||.|.+|++.
T Consensus 243 V~~l~~~~-~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 243 VQALSYAQ-HTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhhh-hheeeeeccCCCeEEEEecc
Confidence 99988766 45679999999999999974
No 229
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=1.9e-14 Score=128.05 Aligned_cols=222 Identities=12% Similarity=0.131 Sum_probs=152.8
Q ss_pred EECCCCcEEEEeecCCCCeEEEEEecCC-CEEEEEeCCCeEEEEEccCCC----cccceeeccCcccceEEEEEccCCCE
Q 018858 43 FDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPA----SWRPLESYNYNKEEINQIVCNPKSSF 117 (349)
Q Consensus 43 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~ 117 (349)
|+. .|..+..+..|...+..++.++.. .++++||.||+|++|+.+... ..+...++......+.++...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 367788888899999999887755 999999999999999987521 11222233323567899999999999
Q ss_pred EEEEcCCCcEEEEEcCCceE-------eceeccccccceeE-EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccc
Q 018858 118 LACADDGGDVKIIDIRQHCL-------YKSLRAGHSSICSS-VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADM 189 (349)
Q Consensus 118 l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (349)
+|+++.||.|++.++...+. .+.......+.+.. -+|...
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~-------------------------------- 1160 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAI-------------------------------- 1160 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccccc--------------------------------
Confidence 99999999999999875211 11111011122222 222221
Q ss_pred cCCCCc-EEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 190 LDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 190 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
.+. .++.+..-+.|..||++.... ..........+.|+
T Consensus 1161 ---~~S~~lvy~T~~~~iv~~D~r~~~~--------------------------------------~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1161 ---VQSHVLVYATDLSRIVSWDTRMRHD--------------------------------------AWRLKNQLRHGLVT 1199 (1431)
T ss_pred ---ccceeEEEEEeccceEEecchhhhh--------------------------------------HHhhhcCcccccee
Confidence 233 778888889999999997311 01112222357899
Q ss_pred EEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCC--CcEEEee--CCCeEE
Q 018858 269 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES--ENLVVCD--TSKVVK 344 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~--~dg~i~ 344 (349)
+++.+ |.+++++.|...|.+-+||++-+. .+.....++..+++.++.+|..+ ...++++ ..+.|-
T Consensus 1200 Si~id---p~~~WlviGts~G~l~lWDLRF~~--------~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1200 SIVID---PWCNWLVIGTSRGQLVLWDLRFRV--------PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred EEEec---CCceEEEEecCCceEEEEEeecCc--------eeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 99999 889999999999999999999863 33344455667888887776443 4555554 568899
Q ss_pred EeeCC
Q 018858 345 VYSIS 349 (349)
Q Consensus 345 iw~~~ 349 (349)
+|++.
T Consensus 1269 ~wn~~ 1273 (1431)
T KOG1240|consen 1269 TWNME 1273 (1431)
T ss_pred eeecc
Confidence 99874
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=3.1e-13 Score=112.18 Aligned_cols=269 Identities=16% Similarity=0.158 Sum_probs=154.8
Q ss_pred ceE-EEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 29 GFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 29 ~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
+++ ++-..++.|.+.|..+.+.+..+......-..+.++|+|+++++++.||.|.++|+.+.+....+.. .....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----GGNPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----CCCcc
Confidence 444 4566789999999999999999986554445578999999999999999999999998765444443 24578
Q ss_pred EEEEccCCCEEEEEc-CCCcEEEEEcCCceEeceeccc------cccceeEEEEccCCCCCCCCCCCCCCccccCCceeE
Q 018858 108 QIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAG------HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVH 180 (349)
Q Consensus 108 ~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (349)
.++++++|+++++++ ..+.+.++|.++.++++.+... ....+.++..+|
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~------------------------ 137 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP------------------------ 137 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S------------------------
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC------------------------
Confidence 899999999998776 5889999999999988877611 123456666666
Q ss_pred EeecCcccccCCCCcEEEEE-cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee-------eeecCce
Q 018858 181 AIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-------LDQSGGK 252 (349)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 252 (349)
....+++. -..+.|.+.|......+...............|+|+++++++... .|.....
T Consensus 138 ------------~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 138 ------------GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp ------------SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred ------------CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 45545544 455888888877654333323333445567899999998875322 1211111
Q ss_pred eeeeeee-ecCCCcceEEEE-------EeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEE
Q 018858 253 RLHLDYS-VGGHTAAASCVA-------FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 324 (349)
Q Consensus 253 ~~~~~~~-~~~h~~~i~~i~-------~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 324 (349)
....+.. -..|..+...+- |... ..+.+.++.-....+.+||..+. +.+......... ..+
T Consensus 206 ~v~~i~~g~~p~~~~~~~~php~~g~vw~~~-~~~~~~~~~ig~~~v~v~d~~~w---------kvv~~I~~~G~g-lFi 274 (369)
T PF02239_consen 206 LVALIDTGKKPHPGPGANFPHPGFGPVWATS-GLGYFAIPLIGTDPVSVHDDYAW---------KVVKTIPTQGGG-LFI 274 (369)
T ss_dssp EEEEEE-SSSBEETTEEEEEETTTEEEEEEE-BSSSSEEEEEE--TTT-STTTBT---------SEEEEEE-SSSS---E
T ss_pred EEEEeeccccccccccccccCCCcceEEeec-cccceecccccCCccccchhhcC---------eEEEEEECCCCc-cee
Confidence 1111111 112333333321 1100 12223322222335567777776 455555555555 667
Q ss_pred EeecCCCCcEEEe----eCCCeEEEeeCC
Q 018858 325 CTTPTESENLVVC----DTSKVVKVYSIS 349 (349)
Q Consensus 325 ~~~~~~~~~l~~~----~~dg~i~iw~~~ 349 (349)
..+| +++++.+. ...+.|.++|..
T Consensus 275 ~thP-~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 275 KTHP-DSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp E--T-T-SEEEEE-TT-SSHT-EEEEECC
T ss_pred ecCC-CCccEEeeccCCCCCceEEEEECc
Confidence 7778 78888888 355889998863
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=3.3e-15 Score=114.62 Aligned_cols=218 Identities=15% Similarity=0.106 Sum_probs=152.4
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEE-cCCCcEEEEEcCCceEecee
Q 018858 63 SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKSL 141 (349)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~ 141 (349)
-..|+|+|+++|+++.- .+.|-|.++-+..+....+ +.|..+.|..+..+++++ ..++.|.+|++...+-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 35799999999999966 6778887765433333222 567889999888776655 56779999999998887788
Q ss_pred ccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccCceeeeec
Q 018858 142 RAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRS 220 (349)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 220 (349)
. ....++.+++|+| +|+ +|.+...+-+|.+|.+.+.......
T Consensus 88 d-eg~agls~~~WSP------------------------------------dgrhiL~tseF~lriTVWSL~t~~~~~~~ 130 (447)
T KOG4497|consen 88 D-EGQAGLSSISWSP------------------------------------DGRHILLTSEFDLRITVWSLNTQKGYLLP 130 (447)
T ss_pred c-cCCCcceeeeECC------------------------------------CcceEeeeecceeEEEEEEeccceeEEec
Confidence 7 6778899999999 674 5566778999999999975443332
Q ss_pred CCCCCCccceeeeeccccEEEEeeeeeecCce------eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEE
Q 018858 221 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vw 294 (349)
. .+..+..++|+|||++.+.....|..... .+.+++.+.-..-..+.+.|+ |||+.|+ ||
T Consensus 131 ~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs---Pdg~~la---------Vw 196 (447)
T KOG4497|consen 131 H--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS---PDGNWLA---------VW 196 (447)
T ss_pred c--cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC---CCCcEEE---------Ee
Confidence 2 23344889999999998865555543222 223344444445567899999 8988776 45
Q ss_pred ecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 295 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
|.--.. ++. .-.-.-.+..++|+| .+++|+.|+.|++++|-+
T Consensus 197 d~~Ley--------kv~--aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 197 DNVLEY--------KVY--AYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred cchhhh--------eee--eeeeccceeEEEecc-ccceEEeeccchhhhhhc
Confidence 432210 110 011123567889988 778999999999998743
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=8.3e-14 Score=105.12 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=106.9
Q ss_pred EEEEecCCCceEEE-eC---------CCCcEEEEECCC-CcEEEEeec-CCCCeEEEEEecCCCEEEEEe--CCCeEEEE
Q 018858 20 CCIASRDRPGFVAS-SG---------EDGCICWFDLRS-KDVQLVTDV-GNGPVTSLCFKSGNEDIIYVS--SGKEVKSF 85 (349)
Q Consensus 20 ~~~~~~~~~~~l~t-~~---------~dg~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~dg~i~iw 85 (349)
.+.|+|+ |++|+. .. .-|...+|.++. ......+.. ..++|.+++|+|+++.+++.. .++.|.+|
T Consensus 10 ~~~W~~~-G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPS-GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEeccc-CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 4678998 665553 22 123455565532 233444433 345799999999999976653 56799999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC---CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
|++ . ..+..+. ...+..+.|+|+|+++++++. .|.|.+||+++.+.+.... |. .+..++|+|
T Consensus 89 d~~-~---~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsP------ 153 (194)
T PF08662_consen 89 DVK-G---KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSP------ 153 (194)
T ss_pred cCc-c---cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcC------
Confidence 997 2 3334443 456788999999999998864 4679999999888887766 33 478999999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC------CCeEEEEEccCc
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG------DGVVDVINIESE 214 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~ 214 (349)
+|++|+++.. |..++||+....
T Consensus 154 ------------------------------dGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 154 ------------------------------DGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ------------------------------CCCEEEEEEeccceeccccEEEEEecCe
Confidence 8999998864 678999998753
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.1e-13 Score=117.03 Aligned_cols=212 Identities=14% Similarity=0.100 Sum_probs=135.1
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
..|.+||..... ...+..+...+...+|+|+|+.|+..+.+ ..|.+||+.+++. ..+... .......+|+|+
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~---~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVASF---RGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEeccC---CCCccCceECCC
Confidence 468999986444 34555677789999999999999988743 4799999987643 223322 234557899999
Q ss_pred CCEEE-EEcCCC--cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 115 SSFLA-CADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 115 ~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
++.++ +.+.+| .|++||+.+++.. .+. .+.......+|+|
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~sp----------------------------------- 301 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLT-RLT-NHFGIDTEPTWAP----------------------------------- 301 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeE-ECc-cCCCCccceEECC-----------------------------------
Confidence 98776 444555 5999999887653 344 3444456788988
Q ss_pred CCCcEEEEEc-CCCe--EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 192 KTNKICVVAK-GDGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 192 ~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
+++.|+..+ .+|. |.++++.+++ ...+..+.....
T Consensus 302 -DG~~l~f~sd~~g~~~iy~~dl~~g~-----------------------------------------~~~lt~~g~~~~ 339 (433)
T PRK04922 302 -DGKSIYFTSDRGGRPQIYRVAASGGS-----------------------------------------AERLTFQGNYNA 339 (433)
T ss_pred -CCCEEEEEECCCCCceEEEEECCCCC-----------------------------------------eEEeecCCCCcc
Confidence 788777655 4444 5555655421 011111122334
Q ss_pred EEEEeeecCCccEEEEeeCC---CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC---Ce
Q 018858 269 CVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS---KV 342 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~ 342 (349)
...|+ |+|++++..+.+ ..|++||+.+++ .. .+. +........|+| +|++|+..+.+ +.
T Consensus 340 ~~~~S---pDG~~Ia~~~~~~~~~~I~v~d~~~g~---------~~-~Lt-~~~~~~~p~~sp-dG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 340 RASVS---PDGKKIAMVHGSGGQYRIAVMDLSTGS---------VR-TLT-PGSLDESPSFAP-NGSMVLYATREGGRGV 404 (433)
T ss_pred CEEEC---CCCCEEEEEECCCCceeEEEEECCCCC---------eE-ECC-CCCCCCCceECC-CCCEEEEEEecCCceE
Confidence 67888 899998876543 269999998763 22 111 222334567877 78777766543 35
Q ss_pred EEEeeC
Q 018858 343 VKVYSI 348 (349)
Q Consensus 343 i~iw~~ 348 (349)
+.++++
T Consensus 405 L~~~~~ 410 (433)
T PRK04922 405 LAAVST 410 (433)
T ss_pred EEEEEC
Confidence 666654
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.63 E-value=9.1e-12 Score=103.63 Aligned_cols=276 Identities=17% Similarity=0.211 Sum_probs=163.8
Q ss_pred CcEEEEEC--CCCcE--EEEeecCCCCeEEEEEecCCCEEEEEeC----CCeEEEEEccCC-CcccceeeccCcccceEE
Q 018858 38 GCICWFDL--RSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS----GKEVKSFDVHMP-ASWRPLESYNYNKEEINQ 108 (349)
Q Consensus 38 g~i~vwd~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~ 108 (349)
+.|++|++ +++++ +..+. .......++++|++++|.+... ++.|..|++... .....+............
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 68998888 44443 22222 3345667899999999998876 469999998864 234444444323355678
Q ss_pred EEEccCCCEEEEEc-CCCcEEEEEcCC-ceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 109 IVCNPKSSFLACAD-DGGDVKIIDIRQ-HCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 109 ~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
++++|++++|+++. .+|.|.++++.. +....... ..+.+. .| ..........|.+.+.
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~------g~-------------~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS------GP-------------NPDRQEGPHPHQVVFS 152 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE------ES-------------STTTTSSTCEEEEEE-
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC------CC-------------cccccccccceeEEEC
Confidence 99999999988876 588999999986 43322210 001000 01 0001111223444444
Q ss_pred cccccCCCCcEEEEEc-CCCeEEEEEccCce--e--eeecCCCCCCccceeeeeccccEEEEeeeeeecC--------ce
Q 018858 186 DADMLDKTNKICVVAK-GDGVVDVINIESEL--N--ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG--------GK 252 (349)
Q Consensus 186 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 252 (349)
| +++++++.. ....|.+|++.... . ......+.....+.++|+|+++++.+.......+ ..
T Consensus 153 p------dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 153 P------DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG 226 (345)
T ss_dssp T------TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred C------CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC
Confidence 4 788777764 44589999997654 2 2234556677789999999999987633221110 11
Q ss_pred eeeeeeeec---C---CCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeeccccccceEEEE
Q 018858 253 RLHLDYSVG---G---HTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 325 (349)
Q Consensus 253 ~~~~~~~~~---~---h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 325 (349)
....+.... . .......|.++ |||++|+++. .++.|.+|++....... ..+............++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~is---pdg~~lyvsnr~~~sI~vf~~d~~~g~l-----~~~~~~~~~G~~Pr~~~ 298 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAIS---PDGRFLYVSNRGSNSISVFDLDPATGTL-----TLVQTVPTGGKFPRHFA 298 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE----TTSSEEEEEECTTTEEEEEEECTTTTTE-----EEEEEEEESSSSEEEEE
T ss_pred ceeEEEEeeeccccccccCCceeEEEe---cCCCEEEEEeccCCEEEEEEEecCCCce-----EEEEEEeCCCCCccEEE
Confidence 122222211 1 11257889999 8999987765 56889999994321100 22222222334578899
Q ss_pred eecCCCCcEEEee-CCCeEEEeeC
Q 018858 326 TTPTESENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 326 ~~~~~~~~l~~~~-~dg~i~iw~~ 348 (349)
++| ++++|+++. .++.|.+|++
T Consensus 299 ~s~-~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 299 FSP-DGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp E-T-TSSEEEEEETTTTEEEEEEE
T ss_pred EeC-CCCEEEEEecCCCeEEEEEE
Confidence 988 888888886 6688999875
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.6e-13 Score=117.38 Aligned_cols=206 Identities=15% Similarity=0.114 Sum_probs=128.4
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
..|.++|.. +.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++. ..+... .......+|+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l~~~---~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVVANF---KGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEeecC---CCCccceEECCC
Confidence 467777874 44344455677889999999999999887743 4699999987643 233323 244568899999
Q ss_pred CCEEE-EEcCCCcEEEE--EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 115 SSFLA-CADDGGDVKII--DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 115 ~~~l~-~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
++.|+ +.+.+|...+| |+..+. ...+. .+........|+|
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSp----------------------------------- 293 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSP----------------------------------- 293 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcC-----------------------------------
Confidence 98886 45677775555 444443 34444 3444556778988
Q ss_pred CCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEE
Q 018858 192 KTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV 270 (349)
Q Consensus 192 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i 270 (349)
+|+.|+..+ .+|...+|.+.... . ....+ .+. .......
T Consensus 294 -DG~~l~f~s~~~g~~~Iy~~~~~~-----------------------------------g-~~~~l-t~~--g~~~~~~ 333 (427)
T PRK02889 294 -DGRSIYFTSDRGGAPQIYRMPASG-----------------------------------G-AAQRV-TFT--GSYNTSP 333 (427)
T ss_pred -CCCEEEEEecCCCCcEEEEEECCC-----------------------------------C-ceEEE-ecC--CCCcCce
Confidence 788776554 45666666654210 0 00111 111 1223356
Q ss_pred EEeeecCCccEEEEeeCCC---eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 271 AFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
.|+ |+|++|+..+.++ .|++||+.+++. . .... ........|+| +++.|+.++.+
T Consensus 334 ~~S---pDG~~Ia~~s~~~g~~~I~v~d~~~g~~---------~-~lt~-~~~~~~p~~sp-dg~~l~~~~~~ 391 (427)
T PRK02889 334 RIS---PDGKLLAYISRVGGAFKLYVQDLATGQV---------T-ALTD-TTRDESPSFAP-NGRYILYATQQ 391 (427)
T ss_pred EEC---CCCCEEEEEEccCCcEEEEEEECCCCCe---------E-EccC-CCCccCceECC-CCCEEEEEEec
Confidence 788 8999998776543 699999988632 1 1111 12235678888 77777776643
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=2.5e-13 Score=102.58 Aligned_cols=150 Identities=17% Similarity=0.303 Sum_probs=105.6
Q ss_pred EEEEEecCCCEEEEEeC----------CCeEEEEEccCCCcccceeeccC-cccceEEEEEccCCCEEEEE--cCCCcEE
Q 018858 62 TSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLACA--DDGGDVK 128 (349)
Q Consensus 62 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~ 128 (349)
..+.|+|+|++|+.-.. -+...+|.++.... ....+.. ..+.|.+++|+|+++.|++. ..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~--~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI--PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC--ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 45789999988776443 14566676644321 1222211 23569999999999887544 4567899
Q ss_pred EEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC---CCe
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DGV 205 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~ 205 (349)
+||++ ++.+..+. ...+..+.|+| +|++|++++. .|.
T Consensus 87 lyd~~-~~~i~~~~---~~~~n~i~wsP------------------------------------~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG---TQPRNTISWSP------------------------------------DGRFLVLAGFGNLNGD 126 (194)
T ss_pred EEcCc-ccEeEeec---CCCceEEEECC------------------------------------CCCEEEEEEccCCCcE
Confidence 99996 55555554 35678899999 8999998864 467
Q ss_pred EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEe
Q 018858 206 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 285 (349)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~ 285 (349)
|.+||.++. +.+.... | ..++.++|+ |+|++|+++
T Consensus 127 l~~wd~~~~----------------------------------------~~i~~~~-~-~~~t~~~Ws---PdGr~~~ta 161 (194)
T PF08662_consen 127 LEFWDVRKK----------------------------------------KKISTFE-H-SDATDVEWS---PDGRYLATA 161 (194)
T ss_pred EEEEECCCC----------------------------------------EEeeccc-c-CcEEEEEEc---CCCCEEEEE
Confidence 999999964 3333332 3 346899999 899999988
Q ss_pred eC------CCeEEEEecCC
Q 018858 286 GN------DKLVKVWDCSR 298 (349)
Q Consensus 286 ~~------d~~i~vwd~~~ 298 (349)
.. |+.++||+...
T Consensus 162 ~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EeccceeccccEEEEEecC
Confidence 74 78899999875
No 237
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.60 E-value=4.3e-13 Score=103.73 Aligned_cols=201 Identities=13% Similarity=0.215 Sum_probs=147.4
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECC----CCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLR----SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
..+++++.+.++ ...|+.|-.+|++.-+.+. ....++....|...+..+-|+...+.+++.+.|..+.---.+.+
T Consensus 68 P~~~~~~~y~~e-~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 68 PSPCSAMEYVSE-SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCCceEeeeecc-ceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 356889999998 7899999999999988764 34445667789999999999999999999999987654444443
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC--CceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR--QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
....-... ....+++.+.-. +...|...|.|..-.+. .-.++..+. +|.+.+.+++|.|
T Consensus 147 ~~lg~Y~~----~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~------------ 207 (404)
T KOG1409|consen 147 NRLGGYNF----ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDP------------ 207 (404)
T ss_pred CcccceEe----eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcC------------
Confidence 22111100 011111111111 44556666666665554 445677788 8999999999999
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
....|++|..|..+.+||+-..+
T Consensus 208 ------------------------~~~~LfSg~~d~~vi~wdigg~~--------------------------------- 230 (404)
T KOG1409|consen 208 ------------------------GQRLLFSGASDHSVIMWDIGGRK--------------------------------- 230 (404)
T ss_pred ------------------------CCcEEEeccccCceEEEeccCCc---------------------------------
Confidence 78899999999999999998532
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
.....+.+|...|..+... +--+.+.++++||.|.+|+++....
T Consensus 231 ------g~~~el~gh~~kV~~l~~~---~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 231 ------GTAYELQGHNDKVQALSYA---QHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred ------ceeeeeccchhhhhhhhhh---hhheeeeeccCCCeEEEEeccceee
Confidence 3446778899999988887 6778999999999999999986543
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.60 E-value=1.9e-13 Score=103.44 Aligned_cols=210 Identities=12% Similarity=0.153 Sum_probs=145.4
Q ss_pred CCcEEEEECCCCcEEE--Eee-cCCCCeEEEEEec---CCC-EEEEEeCCCeEEEEEccCCCcccceeeccCcc---cce
Q 018858 37 DGCICWFDLRSKDVQL--VTD-VGNGPVTSLCFKS---GNE-DIIYVSSGKEVKSFDVHMPASWRPLESYNYNK---EEI 106 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~--~~~-~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~v 106 (349)
.|.+.+|++.+.+... +++ .....+..+.|.- +|. .++-+-.+|.|.++..........+..+..-+ ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678899988765432 222 1335566777753 444 45666678999999766433222232222111 234
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEEcCCceE--eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeec
Q 018858 107 NQIVCNPKSSFLACADDGGDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAI 184 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (349)
.++.|++.+..++++..+|.+.+.+...... .+..+ .|.-.+....|+.+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~--------------------------- 176 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDK--------------------------- 176 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccC---------------------------
Confidence 5778899898899999999999776655443 34777 89989999999875
Q ss_pred CcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCC
Q 018858 185 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 264 (349)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 264 (349)
+.+++.+|+.|+.+..||++... .......+-|.
T Consensus 177 --------~pnlvytGgDD~~l~~~D~R~p~--------------------------------------~~i~~n~kvH~ 210 (339)
T KOG0280|consen 177 --------EPNLVYTGGDDGSLSCWDIRIPK--------------------------------------TFIWHNSKVHT 210 (339)
T ss_pred --------CCceEEecCCCceEEEEEecCCc--------------------------------------ceeeecceeee
Confidence 67899999999999999999421 02223345588
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCC
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 331 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 331 (349)
..|.+|.-+| |++.++++|+.|-.|++||.++.. +++. ...-.+.|+.+.++|...
T Consensus 211 ~GV~SI~ss~--~~~~~I~TGsYDe~i~~~DtRnm~--------kPl~-~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 211 SGVVSIYSSP--PKPTYIATGSYDECIRVLDTRNMG--------KPLF-KAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred cceEEEecCC--CCCceEEEeccccceeeeehhccc--------Cccc-cCccccceEEEEecchhh
Confidence 8999999998 888999999999999999999753 2221 122347888888888543
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.60 E-value=7.7e-13 Score=113.86 Aligned_cols=166 Identities=14% Similarity=0.156 Sum_probs=114.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCC---CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 79 (349)
.+...+.+..+...+...+|+|+ +++|+.+..+ ..|++||+.+++... +..+...+.+++|+|+++.|+.. +.+
T Consensus 178 ~g~~~~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 178 DGANPQTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred CCCCCEEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCC
Confidence 34556777777778899999999 7777765433 479999998876543 33355567778999999987654 444
Q ss_pred C--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CC--cEEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
+ .|++||+.++.. ..+ ..+........|+|+++.|+..+. .+ .|+++|+.+++.. .+. .+........|
T Consensus 256 ~~~~i~~~d~~~~~~-~~l---~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~-~~~~~~~~~~~ 329 (417)
T TIGR02800 256 GNPDIYVMDLDGKQL-TRL---TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT-FRGGYNASPSW 329 (417)
T ss_pred CCccEEEEECCCCCE-EEC---CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee-cCCCCccCeEE
Confidence 3 688889886532 222 222333456789999998876554 33 5888888776543 333 24455667788
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC---eEEEEEccC
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIES 213 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~ 213 (349)
+| ++++++.++.++ .|.+||+.+
T Consensus 330 sp------------------------------------dg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 330 SP------------------------------------DGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CC------------------------------------CCCEEEEEEccCCceEEEEEeCCC
Confidence 88 788888777665 788888875
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.60 E-value=2.6e-13 Score=104.96 Aligned_cols=260 Identities=13% Similarity=0.173 Sum_probs=166.2
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-----EEEEeecCC------------CCeEEEEEecCCC--EEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVGN------------GPVTSLCFKSGNE--DIIY 75 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~ 75 (349)
.+-|.++.|... |.+|+||..+|.+.++.-+... ....++.|. ..|..+.|.++++ .++.
T Consensus 25 adiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 456899999998 9999999999999999754322 223344443 4678899987654 5777
Q ss_pred EeCCCeEEEEEccCCCccc---------------c--ee----------------eccCcccceEEEEEccCCCEEEEEc
Q 018858 76 VSSGKEVKSFDVHMPASWR---------------P--LE----------------SYNYNKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~---------------~--~~----------------~~~~~~~~v~~~~~~~~~~~l~~~~ 122 (349)
.+.|.+|++|.+......+ . +. ...+|.-.+.++.++.|...++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 8889999999886432111 0 00 012456678899999998888876
Q ss_pred CCCcEEEEEcCC-ceEe--ceecc----ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc
Q 018858 123 DGGDVKIIDIRQ-HCLY--KSLRA----GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 195 (349)
Q Consensus 123 ~dg~i~i~d~~~-~~~~--~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
.|=.|.+|+++- .+.. --+++ .-..-|++..|+|. ..+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~-----------------------------------~cn 227 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH-----------------------------------HCN 227 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh-----------------------------------Hcc
Confidence 456799999872 2211 11120 12345778888884 567
Q ss_pred EEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeee
Q 018858 196 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF 275 (349)
Q Consensus 196 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~ 275 (349)
.|+-.+..|.|++.|++.....-......+. ........-+..--..|..+.|+
T Consensus 228 ~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe------------------------pedp~~rsffseiIsSISDvKFs-- 281 (433)
T KOG1354|consen 228 VFVYSSSKGTIRLCDMRQSALCDAHSKLFEE------------------------PEDPSSRSFFSEIISSISDVKFS-- 281 (433)
T ss_pred EEEEecCCCcEEEeechhhhhhcchhhhhcc------------------------ccCCcchhhHHHHhhhhhceEEc--
Confidence 8888899999999999953211100000000 00000001111223578899999
Q ss_pred cCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccc------------cce---EEEEeecCCCCcEEEeeCC
Q 018858 276 GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN------------KKV---NWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 276 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~------------~~v---~~~~~~~~~~~~l~~~~~d 340 (349)
++|+|+++-+. -+|++||+.... +++....-|. +.| ..++|+- ++.+++||+..
T Consensus 282 -~sGryilsRDy-ltvk~wD~nme~--------~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~ 350 (433)
T KOG1354|consen 282 -HSGRYILSRDY-LTVKLWDLNMEA--------KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYN 350 (433)
T ss_pred -cCCcEEEEecc-ceeEEEeccccC--------CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEeccccc
Confidence 89999998764 689999995532 2222332222 122 3456755 66699999999
Q ss_pred CeEEEeeC
Q 018858 341 KVVKVYSI 348 (349)
Q Consensus 341 g~i~iw~~ 348 (349)
..++++++
T Consensus 351 n~frvf~~ 358 (433)
T KOG1354|consen 351 NVFRVFNL 358 (433)
T ss_pred ceEEEecC
Confidence 99999884
No 241
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=6.5e-14 Score=112.92 Aligned_cols=257 Identities=15% Similarity=0.103 Sum_probs=176.4
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVK 128 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~ 128 (349)
...+..|.+.|..+.|+..|..+++++.|..|.+||+..++ ..+....+|...|....|-|. .+.+++++.||.++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 34667899999999999999999999999999999998754 334445667777877788874 47899999999999
Q ss_pred EEEcC-CceEe--ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCe
Q 018858 129 IIDIR-QHCLY--KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV 205 (349)
Q Consensus 129 i~d~~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 205 (349)
+=.+. ++.+. ..+. .|.++|..++..|+ ....|.+++.|+.
T Consensus 213 ~s~i~~t~~~e~t~rl~-~h~g~vhklav~p~-----------------------------------sp~~f~S~geD~~ 256 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLA-PHEGPVHKLAVEPD-----------------------------------SPKPFLSCGEDAV 256 (559)
T ss_pred eeeeccccceecceecc-cccCccceeeecCC-----------------------------------CCCcccccccccc
Confidence 87765 33332 2333 68889999998885 5677899999999
Q ss_pred EEEEEccCceeeeec---CCCCC--CccceeeeeccccEEEEeeeeeecCce----e------eeeeeeec------CCC
Q 018858 206 VDVINIESELNISRS---KSTTK--PLKGSQSTSKVNIRDAEMEILDQSGGK----R------LHLDYSVG------GHT 264 (349)
Q Consensus 206 i~i~d~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~------~h~ 264 (349)
+.-+|++.......+ ....+ .....++..|......+.+..+..... . ...+..+. ...
T Consensus 257 v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~ 336 (559)
T KOG1334|consen 257 VFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDP 336 (559)
T ss_pred eeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCc
Confidence 999999875432221 12222 245567788877644434443332111 0 01112222 223
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccc---ccceeee-cccccc--ceEEEEeecCCCCcEEEee
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI---NNDLLIK-NINLNK--KVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~~~-~~~~~~--~v~~~~~~~~~~~~l~~~~ 338 (349)
..|++++|+ .++.-|+++-.|-.|+++.-..+....... ....... +.+|.. .|..+-|+-+..+++++|+
T Consensus 337 v~ITgl~Ys---h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 337 VNITGLVYS---HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred ccceeEEec---CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence 479999999 788888888889999999544332211100 0122222 677765 3777878776888999999
Q ss_pred CCCeEEEeeC
Q 018858 339 TSKVVKVYSI 348 (349)
Q Consensus 339 ~dg~i~iw~~ 348 (349)
+-|.|.||+-
T Consensus 414 DCGhIFiW~K 423 (559)
T KOG1334|consen 414 DCGHIFIWDK 423 (559)
T ss_pred ccceEEEEec
Confidence 9999999983
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2e-12 Score=110.18 Aligned_cols=213 Identities=12% Similarity=0.033 Sum_probs=128.0
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCce---EEEeCCC--CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGF---VASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS 78 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~---l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 78 (349)
.+...+.|......+..-.|+|+ |+. +++...+ ..|.+.++.+++.... ....+.....+|+|||+.|+..+.
T Consensus 173 dG~~~~~lt~~~~~~~sP~wSPD-G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~ 250 (428)
T PRK01029 173 DGQNLRPLTQEHSLSITPTWMHI-GSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISD 250 (428)
T ss_pred CCCCceEcccCCCCcccceEccC-CCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEEC
Confidence 34556667666667788899999 543 3355444 3577888887764332 223444566899999999887653
Q ss_pred -CC----eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEc-CCCc--EEEEEcCC-ceEeceeccccccce
Q 018858 79 -GK----EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGD--VKIIDIRQ-HCLYKSLRAGHSSIC 149 (349)
Q Consensus 79 -dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~~~~~~~v 149 (349)
+| .+.+|++..+...................+|+|||+.|+..+ .+|. |+++++.. +.....+. .....+
T Consensus 251 ~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~ 329 (428)
T PRK01029 251 RYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNS 329 (428)
T ss_pred CCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCc
Confidence 22 344467664321111111211123345689999999887655 4565 44445432 22233344 334456
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC---CeEEEEEccCceeeeecCCCCCC
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKP 226 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~ 226 (349)
....|+| +|+.|+..+.+ ..|.+||+.+++.
T Consensus 330 ~~p~wSP------------------------------------DG~~Laf~~~~~g~~~I~v~dl~~g~~---------- 363 (428)
T PRK01029 330 SCPAWSP------------------------------------DGKKIAFCSVIKGVRQICVYDLATGRD---------- 363 (428)
T ss_pred cceeECC------------------------------------CCCEEEEEEcCCCCcEEEEEECCCCCe----------
Confidence 7788988 78877765432 4688999886421
Q ss_pred ccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC---CCeEEEEecCCC
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVKVWDCSRF 299 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~ 299 (349)
..+......+....|+ |||++|+..+. +..|+++|+..+
T Consensus 364 -------------------------------~~Lt~~~~~~~~p~wS---pDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 364 -------------------------------YQLTTSPENKESPSWA---IDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred -------------------------------EEccCCCCCccceEEC---CCCCEEEEEECCCCCceEEEEECCCC
Confidence 1222222345667888 89988765432 357889998876
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.58 E-value=2.5e-12 Score=106.35 Aligned_cols=189 Identities=17% Similarity=0.256 Sum_probs=150.7
Q ss_pred CCceEEEeCCCCcEEEEECCCCcEEEEeec---CCCCeEEEEEe------c--------------CCCEEEEEeCCCeEE
Q 018858 27 RPGFVASSGEDGCICWFDLRSKDVQLVTDV---GNGPVTSLCFK------S--------------GNEDIIYVSSGKEVK 83 (349)
Q Consensus 27 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~~~l~~~~~dg~i~ 83 (349)
...++|....||.+++|+...++....+.. -.+..++..|. | +...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 368999999999999999998887666643 22344444442 1 334677788889999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+|++..++....+. -..|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..++ .....+.+++.+|
T Consensus 84 ~ys~~~g~it~~~s-t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is~------- 154 (541)
T KOG4547|consen 84 LYSVAGGEITAKLS-TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCISP------- 154 (541)
T ss_pred EEEecCCeEEEEEe-cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEcC-------
Confidence 99998775433333 34578899999999999999999999999999999999999888 7778899999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++..+++|+ +.|++||+++.
T Consensus 155 -----------------------------D~~~l~~as--~~ik~~~~~~k----------------------------- 174 (541)
T KOG4547|consen 155 -----------------------------DGKILLTAS--RQIKVLDIETK----------------------------- 174 (541)
T ss_pred -----------------------------CCCEEEecc--ceEEEEEccCc-----------------------------
Confidence 789999886 67999999985
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCC-----ccEEEEe-eCCCeEEEEecCC
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER-----GKYLISG-GNDKLVKVWDCSR 298 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~-----~~~l~s~-~~d~~i~vwd~~~ 298 (349)
+.+..+.+|.++|+++.|. .+ |.+++++ ..+.-+.+|-+..
T Consensus 175 -----------evv~~ftgh~s~v~t~~f~---~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 175 -----------EVVITFTGHGSPVRTLSFT---TLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -----------eEEEEecCCCcceEEEEEE---EeccccccceeeeccccccceeEEEEEc
Confidence 7788999999999999998 45 6666655 4566688887765
No 244
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=6.4e-13 Score=109.08 Aligned_cols=307 Identities=12% Similarity=0.055 Sum_probs=190.3
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC-----------CCeEEEEEc
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-----------GKEVKSFDV 87 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~ 87 (349)
+-+.|||. |.||+|-...| |.+|--++-..++.+. |. .|.-+.|||+.+||++=+. ...+.|||+
T Consensus 214 tyv~wSP~-GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPK-GTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCC-ceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 44789999 89999988765 8899766555566665 43 5888999999999998653 158999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC--CC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL--PE 165 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~ 165 (349)
.+|...+.+..+......-.-+.|+.|++++|.-.. ..|.||+..+-.++..-. ..-..|....|+|.+..++. .+
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-LKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-cCCccccCcccCCCcceEEEEccc
Confidence 998776666655433233345789999999997776 469999977654443322 34456888999997655432 11
Q ss_pred CC----------CCCccccCCceeEEeecCcccccCCCCcEEEEEcC----------CCeEEEEEccCceeeeecCCCCC
Q 018858 166 NN----------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----------DGVVDVINIESELNISRSKSTTK 225 (349)
Q Consensus 166 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~ 225 (349)
.+ .+..+.++...+..++=..+ ++.++|.+|++--. -..+.|+.++.... .....+..
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckL-hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~velk 445 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKL-HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVELK 445 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEE-EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeeecc
Confidence 11 23333333322222221111 12336777764321 12355666654322 22222334
Q ss_pred CccceeeeeccccEEEEeeeeeecCce----------eeeeeeeecCCCcceEEEEEeeecCCccEEEEee---CCCeEE
Q 018858 226 PLKGSQSTSKVNIRDAEMEILDQSGGK----------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVK 292 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~---~d~~i~ 292 (349)
..+-..+|.|.|..+++....+..... ...++..+. ....+.+.|+ |.|++++.+. ..|.+.
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfws---PkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWS---PKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEc---CCCcEEEEEEecccccceE
Confidence 566778999999999875444332222 122223332 2345789999 8999998765 568999
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC------CeEEEeeC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS------KVVKVYSI 348 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iw~~ 348 (349)
++|+... ........-....+.+.|.| .|+|++|++.- .--++|++
T Consensus 521 F~D~~~a---------~~k~~~~~eh~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 521 FYDTDYA---------DLKDTASPEHFAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred EEecchh---------hhhhccCccccccccceECC-CCCEEEEeeehhhhccccceEEEEe
Confidence 9999853 12112222223456788988 89999999753 44555553
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=2e-13 Score=119.66 Aligned_cols=192 Identities=16% Similarity=0.135 Sum_probs=151.8
Q ss_pred EEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCC----eEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP----VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
..+.-+ ...++.+..+..+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+.... ..+.
T Consensus 93 ~~l~~e-~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d--n~p~ 169 (967)
T KOG0974|consen 93 AKLFEE-NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED--NKPI 169 (967)
T ss_pred cchhhh-cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc--CCcc
Confidence 334444 467777788889999999877766665543322 222345677778999999999999998832 2222
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEec-eeccccccceeEEEEccCCCCCCCCCCCCCCccccC
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK-SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYN 175 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
.+.+|++.+..+.++.+|+++++.++|..+++|++.+.+... ..- +|...+..+.|.|
T Consensus 170 -~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f-gHsaRvw~~~~~~------------------- 228 (967)
T KOG0974|consen 170 -RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF-GHSARVWACCFLP------------------- 228 (967)
T ss_pred -eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc-cccceeEEEEecc-------------------
Confidence 567899999999999999999999999999999999888766 334 7999999999998
Q ss_pred CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeee
Q 018858 176 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 255 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
+ .+++++.|-+.++|+.+. .
T Consensus 229 -----------------n--~i~t~gedctcrvW~~~~-----------------------------------------~ 248 (967)
T KOG0974|consen 229 -----------------N--RIITVGEDCTCRVWGVNG-----------------------------------------T 248 (967)
T ss_pred -----------------c--eeEEeccceEEEEEeccc-----------------------------------------c
Confidence 4 899999999999997764 3
Q ss_pred eeeeecCCC-cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 256 LDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 256 ~~~~~~~h~-~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+..+.+|. ..|..++.. ++...++|++.|+.+++||+...
T Consensus 249 ~l~~y~~h~g~~iw~~~~~---~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 249 QLEVYDEHSGKGIWKIAVP---IGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eehhhhhhhhcceeEEEEc---CCceEEEeeccCcchhhhhhhcc
Confidence 333666775 478999998 78889999999999999998764
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.9e-12 Score=109.66 Aligned_cols=145 Identities=11% Similarity=0.042 Sum_probs=93.9
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCC---CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 79 (349)
.+...+.+..+...+....|+|+ ++.|+..+.+ ..|.+||+.+++... +....+.+...+|+|+|+.|+.. ..+
T Consensus 187 ~g~~~~~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 187 DGARAVTLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred CCCCceEEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccC
Confidence 34556777778888999999999 6776654432 468999998886533 33233445578999999988754 444
Q ss_pred C--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CC--cEEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
| .|.++|+.+++. ..+ ..+........|+|+++.++..+. +| .|+++|+.+++...... .........|
T Consensus 265 g~~~Iy~~d~~~~~~-~~l---t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--~~~~~~~~~~ 338 (430)
T PRK00178 265 GNPEIYVMDLASRQL-SRV---TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--VGNYNARPRL 338 (430)
T ss_pred CCceEEEEECCCCCe-EEc---ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCCccceEE
Confidence 4 688889887542 222 223344566789999988776553 33 57778887766432221 1222334677
Q ss_pred cc
Q 018858 155 IP 156 (349)
Q Consensus 155 ~~ 156 (349)
+|
T Consensus 339 Sp 340 (430)
T PRK00178 339 SA 340 (430)
T ss_pred CC
Confidence 77
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=2.6e-13 Score=118.98 Aligned_cols=193 Identities=15% Similarity=0.124 Sum_probs=146.6
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCccc----ceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKE----EINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
+....+..+.+.++.++.+..+.+||...+... ...+.... ...-+-++++.-++++|+.-+.|.+|+....+
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~---~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVL---SKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCcee---hhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 333455567788999999999999998864322 22221111 11123346667789999999999999988443
Q ss_pred EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 137 LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
....+. +|.+.+..+.++. +|+++++.+.|..+|+|++.+.+
T Consensus 167 ~p~~l~-GHeG~iF~i~~s~------------------------------------dg~~i~s~SdDRsiRlW~i~s~~- 208 (967)
T KOG0974|consen 167 KPIRLK-GHEGSIFSIVTSL------------------------------------DGRYIASVSDDRSIRLWPIDSRE- 208 (967)
T ss_pred Ccceec-ccCCceEEEEEcc------------------------------------CCcEEEEEecCcceeeeeccccc-
Confidence 333566 8999999999998 89999999999999999999852
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEec
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 296 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~ 296 (349)
.......+|...|..+.+. |+ .++|+++|.+.++|+.
T Consensus 209 --------------------------------------~~~~~~fgHsaRvw~~~~~---~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 209 --------------------------------------VLGCTGFGHSARVWACCFL---PN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred --------------------------------------ccCcccccccceeEEEEec---cc--eeEEeccceEEEEEec
Confidence 1113556899999999999 66 9999999999999977
Q ss_pred CCCcceecccccceeeecccccc-ceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 297 SRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+. ..+..+..|.. .+..++..+ +.-.++|++.||.+++|++
T Consensus 246 ~~----------~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 246 NG----------TQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred cc----------ceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhh
Confidence 76 45556777654 588888865 6668999999999999986
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=6.8e-12 Score=107.99 Aligned_cols=204 Identities=14% Similarity=0.118 Sum_probs=129.7
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
..|.++|..... ...+..+...+...+|+|+|++|+.+..+ ..|++||+.+++. ..+.. +...+..++|+|+
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~~~~~---~~~~~~~~~~spD 244 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-EKVAS---FPGMNGAPAFSPD 244 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEeec---CCCCccceEECCC
Confidence 468888876444 34455566778899999999999987654 4799999987643 22222 2345667899999
Q ss_pred CCEEEE-EcCCC--cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 115 SSFLAC-ADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 115 ~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
++.|+. .+.++ .|++||+.+++... +. .+........|+|
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~s~----------------------------------- 287 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT-NGPGIDTEPSWSP----------------------------------- 287 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEE-CC-CCCCCCCCEEECC-----------------------------------
Confidence 987764 44444 58899988765433 33 2334445667888
Q ss_pred CCCcEEEEEcC-CC--eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 192 KTNKICVVAKG-DG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 192 ~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
+++.|+..+. ++ .|.++|+.++. ...+..+...+.
T Consensus 288 -dg~~l~~~s~~~g~~~iy~~d~~~~~-----------------------------------------~~~l~~~~~~~~ 325 (417)
T TIGR02800 288 -DGKSIAFTSDRGGSPQIYMMDADGGE-----------------------------------------VRRLTFRGGYNA 325 (417)
T ss_pred -CCCEEEEEECCCCCceEEEEECCCCC-----------------------------------------EEEeecCCCCcc
Confidence 6777765543 33 56667766421 112222334456
Q ss_pred EEEEeeecCCccEEEEeeCCC---eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 269 CVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
...|+ |+|++++.++.++ .|.+||+.++.. . ..... .......|+| +++.|+..+.+
T Consensus 326 ~~~~s---pdg~~i~~~~~~~~~~~i~~~d~~~~~~---------~-~l~~~-~~~~~p~~sp-dg~~l~~~~~~ 385 (417)
T TIGR02800 326 SPSWS---PDGDLIAFVHREGGGFNIAVMDLDGGGE---------R-VLTDT-GLDESPSFAP-NGRMILYATTR 385 (417)
T ss_pred CeEEC---CCCCEEEEEEccCCceEEEEEeCCCCCe---------E-EccCC-CCCCCceECC-CCCEEEEEEeC
Confidence 77888 8999998887765 789999887521 1 11111 1223456777 77777777654
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.53 E-value=2.1e-12 Score=106.78 Aligned_cols=191 Identities=13% Similarity=0.096 Sum_probs=146.2
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEc------c--------------CCCEEEEEcCCCcE
Q 018858 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN------P--------------KSSFLACADDGGDV 127 (349)
Q Consensus 68 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~--------------~~~~l~~~~~dg~i 127 (349)
|...++|....||.+++|+...++....+.....-.+..++..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456789999999999999998765433222211112334444442 1 22367889999999
Q ss_pred EEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 128 KIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
.+|++..++....+. ..|.+.|.++.++. +-..|.+++.|+.+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~------------------------------------~~~ciyS~~ad~~v 126 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ------------------------------------RLGCIYSVGADLKV 126 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc------------------------------------ccCceEecCCceeE
Confidence 999999999887776 57889999999888 67889999999999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
..|+.... ..+.........+.++.++ ||++.+++++
T Consensus 127 ~~~~~~~~----------------------------------------~~~~~~~~~~~~~~sl~is---~D~~~l~~as 163 (541)
T KOG4547|consen 127 VYILEKEK----------------------------------------VIIRIWKEQKPLVSSLCIS---PDGKILLTAS 163 (541)
T ss_pred EEEecccc----------------------------------------eeeeeeccCCCccceEEEc---CCCCEEEecc
Confidence 99999874 4455566667788999999 8999999997
Q ss_pred CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecC----CCCcEEEe-eCCCeEEEeeC
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT----ESENLVVC-DTSKVVKVYSI 348 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~-~~dg~i~iw~~ 348 (349)
+.|++||+++. +++..+.+|.++|.++.|--. .|+++++. ..+.-+.+|-+
T Consensus 164 --~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 164 --RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred --ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 58999999998 788899999999999998763 14555555 56666777753
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=4.8e-12 Score=108.73 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=89.4
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeC-CC--CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCC-
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSG-ED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGK- 80 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~-~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg- 80 (349)
...+.+..+...+.+..|+|+ ++.|+..+ .+ ..|++||+.+++... +..........+|+|+|+.|+.. +.++
T Consensus 208 ~~~~~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 208 YNEQMLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred CCceEeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence 334556666777889999999 67666543 23 358899998876532 22222334568999999988764 5555
Q ss_pred -eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CC--cEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 81 -EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 81 -~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.|.++|+.+++. . .+..+.......+|+|+++.|+..+. ++ .|+++|+.+++... +. .........+|+|
T Consensus 286 ~~Iy~~dl~tg~~-~---~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt-~~g~~~~~~~~Sp 359 (448)
T PRK04792 286 PEIYVVDIATKAL-T---RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT-FEGEQNLGGSITP 359 (448)
T ss_pred eEEEEEECCCCCe-E---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee-cCCCCCcCeeECC
Confidence 477778876532 2 22223345567899999998876553 33 47777877665432 22 1122234467888
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=1.4e-13 Score=127.00 Aligned_cols=191 Identities=16% Similarity=0.302 Sum_probs=153.6
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
.++.|-..|.++.-+|. ..+.+||+.||.+++|....++.+..++. ....|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2203 ~~k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred EeecccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 34556678899988998 68899999999999999998887766542 33789999999999999999999999999887
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEc---CCCcEEEEEcCCc---eEeceeccccccceeEEEEccCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACAD---DGGDVKIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
.++....+.|......+.|-. ..+++++ .++.+.+||..-. ..+. . .|.+.++++++-|
T Consensus 2282 ----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~-~H~~gaT~l~~~P------ 2346 (2439)
T KOG1064|consen 2282 ----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--T-CHDGGATVLAYAP------ 2346 (2439)
T ss_pred ----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--e-ecCCCceEEEEcC------
Confidence 467777888888888888865 5566654 4788999997632 2233 4 7999999999999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
..+.|++|+.+|.|++||++..
T Consensus 2347 ------------------------------~~qllisggr~G~v~l~D~rqr---------------------------- 2368 (2439)
T KOG1064|consen 2347 ------------------------------KHQLLISGGRKGEVCLFDIRQR---------------------------- 2368 (2439)
T ss_pred ------------------------------cceEEEecCCcCcEEEeehHHH----------------------------
Confidence 7899999999999999999964
Q ss_pred eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 243 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
++++.++. +. ...++++|+..|.++||++...
T Consensus 2369 ------------ql~h~~~~---------~~----~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2369 ------------QLRHTFQA---------LD----TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred ------------HHHHHhhh---------hh----hhheeeccCcccceEEEEcccc
Confidence 33334432 22 4568999999999999999886
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=2.8e-10 Score=94.77 Aligned_cols=241 Identities=17% Similarity=0.159 Sum_probs=150.7
Q ss_pred eeEEEEecCCCceEEEeCC----CCcEEEEECCCC--cE--EEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEcc
Q 018858 18 ATCCIASRDRPGFVASSGE----DGCICWFDLRSK--DV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDVH 88 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~----dg~i~vwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 88 (349)
-..++++|+ +++|++... +|.|..|++... ++ +............++++|++++|+++.. +|.|.++++.
T Consensus 39 Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 39 PSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp ECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 455788888 777777655 578999988753 33 3344434556678999999999999885 7899999998
Q ss_pred CC-Ccccceeec----------cCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCce--E--eceeccccccceeEE
Q 018858 89 MP-ASWRPLESY----------NYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHC--L--YKSLRAGHSSICSSV 152 (349)
Q Consensus 89 ~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~--~--~~~~~~~~~~~v~~~ 152 (349)
.. ......... ........++.++|+++++++.. ....|++|++.... . ...+........+.+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 63 222221111 01124577899999999887654 34579999997543 2 122222345667889
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE-EcCCCeEEEEEcc--Ccee--eee---cCC-C
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIE--SELN--ISR---SKS-T 223 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~~~~--~~~---~~~-~ 223 (349)
.|+| +++++.+ .-.++.|.+|++. .+.. ... ... .
T Consensus 198 ~f~p------------------------------------dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 198 AFSP------------------------------------DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp EE-T------------------------------------TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred EEcC------------------------------------CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 9999 6766654 4578899999998 3322 111 111 1
Q ss_pred -CCCccceeeeeccccEEEEeeeeeec--------CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEE
Q 018858 224 -TKPLKGSQSTSKVNIRDAEMEILDQS--------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKV 293 (349)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~v 293 (349)
.......+.++|||+++.++...... .......+..+.......+.+.++ |+|++|+++. .++.|.+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s---~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS---PDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE----TTSSEEEEEETTTTEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe---CCCCEEEEEecCCCeEEE
Confidence 12256789999999999863322111 111223333343333457899999 8999998887 5688999
Q ss_pred EecCC
Q 018858 294 WDCSR 298 (349)
Q Consensus 294 wd~~~ 298 (349)
|++..
T Consensus 319 f~~d~ 323 (345)
T PF10282_consen 319 FDIDP 323 (345)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 98753
No 253
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.51 E-value=6.8e-12 Score=95.17 Aligned_cols=247 Identities=12% Similarity=0.024 Sum_probs=164.4
Q ss_pred eeeeEEEEec--CCCc-eEEEeCCCCcEEEEECCCCcEEEEeecCC------CCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 16 ATATCCIASR--DRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGN------GPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 16 ~~i~~~~~~~--~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
..+..+.|.. .++. .++-+..+|.|.++..........+.+-. ....++.|++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3455556642 3344 46666778899999876544433333211 1245778899999999999999998665
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcC-CceEece-eccccccceeEEEEccCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIR-QHCLYKS-LRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~-~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
.... ..+..+.++.|+-+++-..|+... +.+.+|++|+.+..||+| .++.+.. .+ .|...|.+|.-+|.
T Consensus 150 ~t~~-~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k-vH~~GV~SI~ss~~------ 221 (339)
T KOG0280|consen 150 ETEM-VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK-VHTSGVVSIYSSPP------ 221 (339)
T ss_pred ccee-eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce-eeecceEEEecCCC------
Confidence 4432 234445678888889989997644 788999999999999999 4444443 34 67888888888873
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.+.++++|+.|-.|++||.++-.
T Consensus 222 -----------------------------~~~~I~TGsYDe~i~~~DtRnm~---------------------------- 244 (339)
T KOG0280|consen 222 -----------------------------KPTYIATGSYDECIRVLDTRNMG---------------------------- 244 (339)
T ss_pred -----------------------------CCceEEEeccccceeeeehhccc----------------------------
Confidence 67899999999999999999621
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
+++..-. -.+.|..+..+|.. .++.|+++-.+| .+|-+.+...... ...+.....|.+-...
T Consensus 245 -----------kPl~~~~-v~GGVWRi~~~p~~-~~~lL~~CMh~G-~ki~~~~~~~~e~----~~~~~s~~~hdSl~YG 306 (339)
T KOG0280|consen 245 -----------KPLFKAK-VGGGVWRIKHHPEI-FHRLLAACMHNG-AKILDSSDKVLEF----QIVLPSDKIHDSLCYG 306 (339)
T ss_pred -----------CccccCc-cccceEEEEecchh-hhHHHHHHHhcC-ceEEEecccccch----heeeeccccccceeec
Confidence 2221111 23789999998632 233444444444 6677776653321 0244455667777777
Q ss_pred EEeecCCCCcEEEee-CCCeEE-Ee
Q 018858 324 LCTTPTESENLVVCD-TSKVVK-VY 346 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~-~dg~i~-iw 346 (349)
-.|...++ .|+||+ .|..++ +|
T Consensus 307 ~DWd~~~~-~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 307 GDWDSKDS-FLATCSFYDKKIRQLW 330 (339)
T ss_pred cccccccc-eeeeeeccccceeeee
Confidence 77865433 788886 677755 77
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=6.6e-11 Score=102.05 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=76.0
Q ss_pred cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEccCC
Q 018858 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
.|.++|.+.+.. ..+..+...+....|+|+|+.|+..+.+ ..|.+|++.+++. +.+... .+......|+|+|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~---~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNF---EGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCC---CCCcCCeEECCCC
Confidence 477788775543 4455567788999999999999887644 3799999987643 223322 2345568999999
Q ss_pred CEEEE-EcCCC--cEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 116 SFLAC-ADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 116 ~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+.|+. ...+| .|+++|+.+++.. .+. .+........|+|
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~~sp 296 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVT-NHPAIDTEPFWGK 296 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-Ecc-cCCCCcCCeEECC
Confidence 88874 44444 5888899877653 333 3444556678888
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=5.8e-10 Score=87.60 Aligned_cols=256 Identities=13% Similarity=0.171 Sum_probs=163.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCC---CCcEEEEECCC--CcEE--EEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGE---DGCICWFDLRS--KDVQ--LVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKS 84 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 84 (349)
.+.+..+=++|+|+ ++.|+++.. +|.|..|.++. |++. ........+.+.+++++++++++++.. .|.|.+
T Consensus 37 ~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 35566778999998 788888754 47788777764 5542 222223344588999999999999986 479999
Q ss_pred EEccCCCcccceeeccCcccc----------eEEEEEccCCCEEEEEcC-CCcEEEEEcCCceEecee--ccccccceeE
Q 018858 85 FDVHMPASWRPLESYNYNKEE----------INQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSL--RAGHSSICSS 151 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~--~~~~~~~v~~ 151 (349)
+-++.............|.+. +.+..+.|+++++++..- -..|.+|++..++....- ........+.
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 998763223332222223333 778899999999887653 236999999977543211 1124566788
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccce
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGS 230 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (349)
|.|+| ++++..+.+ -+++|.+|........
T Consensus 196 i~FHp------------------------------------n~k~aY~v~EL~stV~v~~y~~~~g~------------- 226 (346)
T COG2706 196 IVFHP------------------------------------NGKYAYLVNELNSTVDVLEYNPAVGK------------- 226 (346)
T ss_pred EEEcC------------------------------------CCcEEEEEeccCCEEEEEEEcCCCce-------------
Confidence 99999 677765544 6899999999863100
Q ss_pred eeeeccccEEEEeeeeeecCceeeeeee----eecCCCcceEEEEEeeecCCccEEEEeeC-CCeEEEEecCCCcceecc
Q 018858 231 QSTSKVNIRDAEMEILDQSGGKRLHLDY----SVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~i~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~ 305 (349)
....+.+. .+.+ ......|.++ +||++|.++.. ...|.+|.+.......
T Consensus 227 --------------------~~~lQ~i~tlP~dF~g-~~~~aaIhis---~dGrFLYasNRg~dsI~~f~V~~~~g~L-- 280 (346)
T COG2706 227 --------------------FEELQTIDTLPEDFTG-TNWAAAIHIS---PDGRFLYASNRGHDSIAVFSVDPDGGKL-- 280 (346)
T ss_pred --------------------EEEeeeeccCccccCC-CCceeEEEEC---CCCCEEEEecCCCCeEEEEEEcCCCCEE--
Confidence 00011111 1222 2345678888 89999988752 3478888876643211
Q ss_pred cccceeeeccccccceEEEEeecCCCCcEEEeeCC-CeEEEeeC
Q 018858 306 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS-KVVKVYSI 348 (349)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iw~~ 348 (349)
..+.....+........+++ .+++|+++..+ ..|.+|.+
T Consensus 281 ---~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 281 ---ELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFER 320 (346)
T ss_pred ---EEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEE
Confidence 23333333444567778877 77888888743 56777754
No 256
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.8e-12 Score=105.81 Aligned_cols=200 Identities=9% Similarity=0.068 Sum_probs=145.5
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee-
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES- 98 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 98 (349)
.++++..... |+.++....|+-++++.|+-+..+....+++.++..++...+|++|+.+|.|..||.++......+..
T Consensus 138 Dm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred cccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 3444433233 44444445788999999999888888889999999999999999999999999999987544433322
Q ss_pred --ccCcc-----cceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 99 --YNYNK-----EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 99 --~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
...+. ..|+++.|+.+|-.+++|+.+|.+.|||++..+++..-.....-+|..+.|.+.
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~-------------- 282 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT-------------- 282 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc--------------
Confidence 11122 249999999999999999999999999999888876655344567888888772
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 251 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
.+++.+++ .....++|||-.+++
T Consensus 283 --------------------~~q~~v~S-~Dk~~~kiWd~~~Gk------------------------------------ 305 (703)
T KOG2321|consen 283 --------------------DQQNKVVS-MDKRILKIWDECTGK------------------------------------ 305 (703)
T ss_pred --------------------CCCceEEe-cchHHhhhcccccCC------------------------------------
Confidence 02444544 345789999988752
Q ss_pred eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 252 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 252 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
....+. ....++.+++- |++.+++++-++..+..|=++..
T Consensus 306 ----~~asiE-pt~~lND~C~~---p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 306 ----PMASIE-PTSDLNDFCFV---PGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ----ceeecc-ccCCcCceeee---cCCceEEEecCCCcceeEEcccc
Confidence 222222 23447888887 78889999988888877776654
No 257
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=6.6e-13 Score=109.36 Aligned_cols=209 Identities=13% Similarity=0.176 Sum_probs=145.5
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-------CcEEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 79 (349)
.++.+.||+..|..++.-.+ .+-+++++.|.++++|.++. ..+..+++.|..+|..+.|-.+.+++++ .|
T Consensus 727 rL~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred eeecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence 45677899999999887665 78899999999999999863 2256788899999999999988877765 47
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEcc--CCCEEEEE-cCCCcEEEEEcCCceEeceec----cccccceeEE
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACA-DDGGDVKIIDIRQHCLYKSLR----AGHSSICSSV 152 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~ 152 (349)
|.|++||.-.+.....+...+.+ +.+..+..-| +...+..| +...+|+++|.+.++-..+++ .+.+..++++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred CcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 88999997755433322222222 2333333333 33444444 678899999999876555544 1345567788
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
+..| .|+.++.+-..|.|.+.|.++++.
T Consensus 883 aVa~------------------------------------~GN~lAa~LSnGci~~LDaR~G~v---------------- 910 (1034)
T KOG4190|consen 883 AVAD------------------------------------KGNKLAAALSNGCIAILDARNGKV---------------- 910 (1034)
T ss_pred Eecc------------------------------------CcchhhHHhcCCcEEEEecCCCce----------------
Confidence 8877 799999999999999999998632
Q ss_pred eeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEE-EecCCC
Q 018858 233 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV-WDCSRF 299 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~v-wd~~~~ 299 (349)
+...+.-+.....++- |..+.|+....|..+.| |..-.+
T Consensus 911 ------------------------INswrpmecdllqlaa----psdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 911 ------------------------INSWRPMECDLLQLAA----PSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred ------------------------eccCCcccchhhhhcC----chhHHHHhhcccceeEeeehhcCC
Confidence 2222222223333432 56677887778888888 876654
No 258
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.45 E-value=3.5e-10 Score=91.78 Aligned_cols=174 Identities=10% Similarity=0.038 Sum_probs=128.8
Q ss_pred EecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC-eEEEEEccCCCcccceeeccC
Q 018858 23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK-EVKSFDVHMPASWRPLESYNY 101 (349)
Q Consensus 23 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~ 101 (349)
|++-+|++++..+. |...+.+...+-.++ -++.+.|.-..+.-+++-++.|..|| .+-|+|.++++..+...
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~---- 399 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK---- 399 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC----
Confidence 44445778887775 677777655444333 24667788888888888899999998 89999999764332222
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEE
Q 018858 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHA 181 (349)
Q Consensus 102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (349)
.-+.|.++..+|+|++++.+.....|.+.|+.++++...-+ ...+.|+.+.|+|
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~------------------------- 453 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHP------------------------- 453 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcC-------------------------
Confidence 34789999999999999999999999999999998755545 6678899999999
Q ss_pred eecCcccccCCCCcEEEEEcCCC----eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 182 IAIPDADMLDKTNKICVVAKGDG----VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
+++.+|-+--+| .|++||+.+++....... ...-.+.+|.||+++|..
T Consensus 454 -----------nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 454 -----------NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred -----------CceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccccCcccCCCCcEEEE
Confidence 677777666554 689999987654432221 233456788999998875
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=1e-12 Score=121.47 Aligned_cols=213 Identities=16% Similarity=0.141 Sum_probs=157.5
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEE
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIV 110 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 110 (349)
+.....++...-|..+... ..++.+-..|.++.-+|...+.++|+.||.+++|....++.+....+.- ...|+.+.
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~--~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--~s~vtr~~ 2258 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGAS--VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--NSRVTRSR 2258 (2439)
T ss_pred CCcccCCccccceecccce--eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--cchhhhhh
Confidence 3333344444445443222 1234455678888888999999999999999999998776655555442 37899999
Q ss_pred EccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccccc
Q 018858 111 CNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADML 190 (349)
Q Consensus 111 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
|+.+|+.+..+..||.+.+|... .++....+ .|+.....+.|-.
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~---------------------------------- 2302 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIG---------------------------------- 2302 (2439)
T ss_pred hcccCCceeeeccCCceeecccC-Ccceeccc-cCCccccceeeee----------------------------------
Confidence 99999999999999999999986 56666677 7888888888753
Q ss_pred CCCCcEEEEEc---CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcce
Q 018858 191 DKTNKICVVAK---GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA 267 (349)
Q Consensus 191 ~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 267 (349)
..+++++ .++.+.+||.... ....++. ..|.+.+
T Consensus 2303 ----s~~~tag~s~d~~n~~lwDtl~~-------------------------------------~~~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2303 ----SLLATAGRSSDNRNVCLWDTLLP-------------------------------------PMNSLVH--TCHDGGA 2339 (2439)
T ss_pred ----hhhhccccCCCCCcccchhcccC-------------------------------------cccceee--eecCCCc
Confidence 4455554 5678999997642 1112333 7899999
Q ss_pred EEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 268 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 268 ~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+++++. |..+.|++||.+|.|++||++.. ++...+.. +. ...++++++..|.++||+
T Consensus 2340 T~l~~~---P~~qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2340 TVLAYA---PKHQLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LD--TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred eEEEEc---CcceEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hh--hhheeeccCcccceEEEE
Confidence 999999 89999999999999999999986 34333332 32 334899999999999999
Q ss_pred CC
Q 018858 348 IS 349 (349)
Q Consensus 348 ~~ 349 (349)
++
T Consensus 2397 ~s 2398 (2439)
T KOG1064|consen 2397 LS 2398 (2439)
T ss_pred cc
Confidence 74
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.44 E-value=2.2e-09 Score=87.50 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=78.8
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC----------CCeEEEEEccCCCcccceeeccC----cc
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNY----NK 103 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~----~~ 103 (349)
++|.+.|..+++.+..+.....+- .+ ++|+++.|+++.. +..|.+||..+.+....+..-.. ..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999988888654443 34 9999999887765 68999999998765544443111 01
Q ss_pred cceEEEEEccCCCEEEEEc-C-CCcEEEEEcCCceEeceec
Q 018858 104 EEINQIVCNPKSSFLACAD-D-GGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~ 142 (349)
.....++++|+|+++++.. . +..|.+.|+.+++.+.++.
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 2334789999999998776 3 6889999999999988877
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.6e-10 Score=97.39 Aligned_cols=218 Identities=13% Similarity=0.091 Sum_probs=126.7
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEE--E-EEeCC--CeEEEEEccCCCcccceeeccCcccceEEEEEc
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI--I-YVSSG--KEVKSFDVHMPASWRPLESYNYNKEEINQIVCN 112 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~-~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 112 (349)
..|.+.|.+.+.. ..+.........-+|+|+|+.+ + +...+ ..|.+.++..++. ..+..+. ......+|+
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~~~---g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILALQ---GNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeecCC---CCccceEEC
Confidence 4677778765544 3344455667788999999863 2 33333 3688888886643 3444443 344568999
Q ss_pred cCCCEEEEEcC-CC--c--EEEEEcCCc---eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeec
Q 018858 113 PKSSFLACADD-GG--D--VKIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAI 184 (349)
Q Consensus 113 ~~~~~l~~~~~-dg--~--i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (349)
|||+.|+..+. +| . +..|++..+ +...... .........+|+|
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-~~~~~~~~p~wSP---------------------------- 290 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-EAFGTQGNPSFSP---------------------------- 290 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-CCCCCcCCeEECC----------------------------
Confidence 99988876543 23 2 344676542 2222222 2223345678888
Q ss_pred CcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC
Q 018858 185 PDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 263 (349)
Q Consensus 185 ~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 263 (349)
+|+.|+..+ .+|...+|.+.... . ......+..+
T Consensus 291 --------DG~~Laf~s~~~g~~~ly~~~~~~-----------------------------------~--g~~~~~lt~~ 325 (428)
T PRK01029 291 --------DGTRLVFVSNKDGRPRIYIMQIDP-----------------------------------E--GQSPRLLTKK 325 (428)
T ss_pred --------CCCEEEEEECCCCCceEEEEECcc-----------------------------------c--ccceEEeccC
Confidence 788766554 56655555432100 0 0111223333
Q ss_pred CcceEEEEEeeecCCccEEEEeeCC---CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee-C
Q 018858 264 TAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-T 339 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~ 339 (349)
...+....|+ |||++|+..+.+ ..|++||+.+++. . .+......+....|+| ||+.|+..+ .
T Consensus 326 ~~~~~~p~wS---PDG~~Laf~~~~~g~~~I~v~dl~~g~~---------~-~Lt~~~~~~~~p~wSp-DG~~L~f~~~~ 391 (428)
T PRK01029 326 YRNSSCPAWS---PDGKKIAFCSVIKGVRQICVYDLATGRD---------Y-QLTTSPENKESPSWAI-DSLHLVYSAGN 391 (428)
T ss_pred CCCccceeEC---CCCCEEEEEEcCCCCcEEEEEECCCCCe---------E-EccCCCCCccceEECC-CCCEEEEEECC
Confidence 3456678899 899988866543 4699999988732 2 2222223456678987 777766543 2
Q ss_pred --CCeEEEeeC
Q 018858 340 --SKVVKVYSI 348 (349)
Q Consensus 340 --dg~i~iw~~ 348 (349)
...|++|++
T Consensus 392 ~g~~~L~~vdl 402 (428)
T PRK01029 392 SNESELYLISL 402 (428)
T ss_pred CCCceEEEEEC
Confidence 356777775
No 262
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.41 E-value=1e-09 Score=101.36 Aligned_cols=290 Identities=9% Similarity=0.042 Sum_probs=175.6
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEE----ECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC-
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWF----DLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM- 89 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 89 (349)
.+.|.++.+.++ ...++.+..+|.|.+. +..+.. +...-.-...|.+++||||++.|+.++.++++.+.+-.-
T Consensus 75 ~~~ivs~~yl~d-~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 75 NDKIVSFQYLAD-SESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCcEEEEEeccC-CCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 467999999998 6778888888999999 544333 222233457899999999999999999888887654210
Q ss_pred ------------CC------------------cccc---------e-----eeccCcccceEEEEEccCCCEEEEEcC--
Q 018858 90 ------------PA------------------SWRP---------L-----ESYNYNKEEINQIVCNPKSSFLACADD-- 123 (349)
Q Consensus 90 ------------~~------------------~~~~---------~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 123 (349)
+. ..+. + ..+. ....-..++|-.||.+||+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 00 0000 0 0011 2334567899999999998764
Q ss_pred -C---CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE
Q 018858 124 -G---GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 199 (349)
Q Consensus 124 -d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (349)
. ..++||+- .|....... .-.+--.+++|.| .|+++|+
T Consensus 232 ~~~~~R~iRVy~R-eG~L~stSE-~v~gLe~~l~WrP------------------------------------sG~lIA~ 273 (928)
T PF04762_consen 232 ETGSRRVIRVYSR-EGELQSTSE-PVDGLEGALSWRP------------------------------------SGNLIAS 273 (928)
T ss_pred CCCceeEEEEECC-CceEEeccc-cCCCccCCccCCC------------------------------------CCCEEEE
Confidence 3 46999994 465544433 3344445678888 7888887
Q ss_pred EcC---CCeEEEEEccCceeeee-cC-CCCCCccceeeeeccccEEEEeeeeeecC----ceeeeeeeeecC-CCcceEE
Q 018858 200 AKG---DGVVDVINIESELNISR-SK-STTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGG-HTAAASC 269 (349)
Q Consensus 200 ~~~---dg~i~i~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-h~~~i~~ 269 (349)
.-. ...|.+|.-+..+.-.. .. .+....+..+.|++|+..||+.-...... ...+.+.+.+.- ....+..
T Consensus 274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNF 353 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence 653 34566676554333221 11 24566789999999999999633111111 112223333332 1233455
Q ss_pred EEEeeecCCccEEEEeeCCCeEEEEecC----CCcc--------eecc--------------cccceeeeccccccceEE
Q 018858 270 VAFSMFGERGKYLISGGNDKLVKVWDCS----RFQG--------VQTS--------------INNDLLIKNINLNKKVNW 323 (349)
Q Consensus 270 i~~~~~~~~~~~l~s~~~d~~i~vwd~~----~~~~--------~~~~--------------~~~~~~~~~~~~~~~v~~ 323 (349)
+.|+| .+...|.....+|.+..++.. .... .... -+++...........|+.
T Consensus 354 ~~Wdp--e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 354 VKWDP--EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND 431 (928)
T ss_pred eEECC--CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence 88985 344456666655666555432 2111 0000 011111222345678999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++|++ ++..+++...||.|.+|..
T Consensus 432 vaf~~-~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 432 VAFSP-SNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred EEEeC-CCCeEEEEECCCCEEEEEe
Confidence 99988 4445899999999999874
No 263
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.41 E-value=1.5e-11 Score=91.80 Aligned_cols=246 Identities=8% Similarity=-0.035 Sum_probs=145.0
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCc------------EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKD------------VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
|+.+.+.-+ ..|+++..++.+.......+. +.+.+..|.++-.+-+.+--+..++++..||.+.++
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 666666654 578888777776666543222 233344444433333333346679999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-----CCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+.+.. .............--+.+....+.++.++.- -+..+.|+++..+.+..-+ .....|.+++-+|.
T Consensus 117 s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~--- 190 (319)
T KOG4714|consen 117 STDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPA--- 190 (319)
T ss_pred echHH--HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCcc---
Confidence 98741 1111111111111112222333444443321 1345666665443322222 22334777777773
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
..+.+++|+.||.+-+||.+...
T Consensus 191 --------------------------------qq~~v~cgt~dg~~~l~d~rn~~------------------------- 213 (319)
T KOG4714|consen 191 --------------------------------QQHLVCCGTDDGIVGLWDARNVA------------------------- 213 (319)
T ss_pred --------------------------------cccEEEEecCCCeEEEEEccccc-------------------------
Confidence 56788899999999999999731
Q ss_pred EEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee----c-------cccc-
Q 018858 241 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ----T-------SINN- 308 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~-------~~~~- 308 (349)
.+...+..|+.+|+.+-|+| .++..|+++++||.+.-||..+..... . ..+.
T Consensus 214 --------------~p~S~l~ahk~~i~eV~FHp--k~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~ 277 (319)
T KOG4714|consen 214 --------------MPVSLLKAHKAEIWEVHFHP--KNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVK 277 (319)
T ss_pred --------------chHHHHHHhhhhhhheeccC--CCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCccc
Confidence 44566788999999999998 678899999999999999988521100 0 0000
Q ss_pred cee---eeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 309 DLL---IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 309 ~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..+ .....-...|+++.. -|..|++|++-+.|++.+
T Consensus 278 s~i~i~~ll~~~~~SinsfDV---~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 278 SRIEITSLLPSRSLSINSFDV---LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ceEeeeccccccceeeeeeec---cCceEEeccccceEEEec
Confidence 001 011112234565555 344799999999999875
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.8e-10 Score=95.06 Aligned_cols=229 Identities=16% Similarity=0.219 Sum_probs=149.4
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC--EEEE-----EeCCCeEEEEEccCCC
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIY-----VSSGKEVKSFDVHMPA 91 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~dg~i~iwd~~~~~ 91 (349)
++..|++| .. ++.--..+.+.+|++.+-+.+. -.-|...+..+.++|.+. .+|+ .+.-+.|+||......
T Consensus 129 W~~qfs~d-Es-l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSID-ES-LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccc-hh-hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 57788887 33 3333334679999987744322 233678899999998643 3443 2334689999876322
Q ss_pred cccce--eeccCcccceEEEEEccCCC-EEEEE--cCC---------CcEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 92 SWRPL--ESYNYNKEEINQIVCNPKSS-FLACA--DDG---------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 92 ~~~~~--~~~~~~~~~v~~~~~~~~~~-~l~~~--~~d---------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
....+ +.+. ...-..+.|++.+. +|+.. .-| ..+++.++....+.-.+. ..++|.++.|+|
T Consensus 206 ~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~GPVhdv~W~~- 280 (566)
T KOG2315|consen 206 QHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KEGPVHDVTWSP- 280 (566)
T ss_pred ccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CCCCceEEEECC-
Confidence 22222 1221 12233578888764 33322 223 358888887444444443 578999999999
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE--EcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV--AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
+++.|++ |-.-..+.|||++.
T Consensus 281 -----------------------------------s~~EF~VvyGfMPAkvtifnlr~---------------------- 303 (566)
T KOG2315|consen 281 -----------------------------------SGREFAVVYGFMPAKVTIFNLRG---------------------- 303 (566)
T ss_pred -----------------------------------CCCEEEEEEecccceEEEEcCCC----------------------
Confidence 6766654 44567899999996
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC---CeEEEEecCCCcceecccccceee
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
.++..+. .++-+++.|+ |.|++++.+|-+ |.|-|||+.+. +.+.
T Consensus 304 -------------------~~v~df~--egpRN~~~fn---p~g~ii~lAGFGNL~G~mEvwDv~n~---------K~i~ 350 (566)
T KOG2315|consen 304 -------------------KPVFDFP--EGPRNTAFFN---PHGNIILLAGFGNLPGDMEVWDVPNR---------KLIA 350 (566)
T ss_pred -------------------CEeEeCC--CCCccceEEC---CCCCEEEEeecCCCCCceEEEeccch---------hhcc
Confidence 4555554 5677899999 899999888744 88999999996 4444
Q ss_pred eccccccceEEEEeecCCCCcEEEeeC------CCeEEEeeC
Q 018858 313 KNINLNKKVNWLCTTPTESENLVVCDT------SKVVKVYSI 348 (349)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iw~~ 348 (349)
.+..- .-+-+.|+| ||++++|++. |+.++||+.
T Consensus 351 ~~~a~--~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 351 KFKAA--NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred ccccC--CceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe
Confidence 44333 234457988 9999999863 788999985
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=3.9e-10 Score=97.05 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=74.8
Q ss_pred cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEccCC
Q 018858 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
.|.++|...... ..+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++. ..+.... ......+|+|++
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~---g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFP---GINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCC---CCcCCeeECCCC
Confidence 577778765443 3445567788899999999999887643 3688899887643 2333332 334468999999
Q ss_pred CEEEE-EcCCCc--EEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 116 SFLAC-ADDGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 116 ~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+.|+. .+.+|. |+++|+.+++.. .+. .+.......+|+|
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSp 315 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHP 315 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECC
Confidence 98765 455664 888898877653 333 3444566788888
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.38 E-value=2.9e-09 Score=100.19 Aligned_cols=283 Identities=9% Similarity=0.031 Sum_probs=155.0
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-C-------------CCCeEEEEEecCCCEEEEEe-CCCeEE
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-G-------------NGPVTSLCFKSGNEDIIYVS-SGKEVK 83 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~~-~dg~i~ 83 (349)
..+++++.++.++++-..++.|+++|.. ++.+..+.. . -.....+++.++++.|+++. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 3578887656778887888999999976 444433322 1 12357899999888766655 457899
Q ss_pred EEEccCCCcccceee-------ccCc-------ccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccc
Q 018858 84 SFDVHMPASWRPLES-------YNYN-------KEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI 148 (349)
Q Consensus 84 iwd~~~~~~~~~~~~-------~~~~-------~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 148 (349)
++|+.++. ...+.. ..+. -.....++++| ++..+++...++.|++||..++... .+. +....
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~-G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS-GDGYE 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe-cCCcc
Confidence 99987542 222211 0000 12346899999 4566677778889999998776542 221 11000
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
. .... .............++++| +++ ++++-..++.|++||+.++...........
T Consensus 727 ~---~~~g------------~~~~~~~~~~P~GIavsp------dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~-- 783 (1057)
T PLN02919 727 R---NLNG------------SSGTSTSFAQPSGISLSP------DLKELYIADSESSSIRALDLKTGGSRLLAGGDPT-- 783 (1057)
T ss_pred c---cCCC------------CccccccccCccEEEEeC------CCCEEEEEECCCCeEEEEECCCCcEEEEEecccc--
Confidence 0 0000 000000011234455554 676 455556779999999986432110000000
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 307 (349)
.++. +...+..++. .. ...-.....++++ ++|+++++-+.++.|++||..++........
T Consensus 784 ------~~~~--l~~fG~~dG~-----g~----~~~l~~P~Gvavd---~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 784 ------FSDN--LFKFGDHDGV-----GS----EVLLQHPLGVLCA---KDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred ------cCcc--cccccCCCCc-----hh----hhhccCCceeeEe---CCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 0000 0000000000 00 0011234688898 8999888888999999999987632211000
Q ss_pred ccee----eeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 308 NDLL----IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 308 ~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
...- ....+.-.....+++.+ +|+++++-+.++.|++||++
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECC
Confidence 0000 00111223577889977 78877777899999999974
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.3e-10 Score=98.92 Aligned_cols=276 Identities=12% Similarity=0.102 Sum_probs=178.3
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---------------EEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---------------VQLVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 79 (349)
.....|++|+.. ..+++.|+.||.+++-.+.+.. .-+++.+|+..|..+.|+.+.+.|-+...+
T Consensus 14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 456889999998 8899999999999999876421 124678999999999999999999999999
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe-ceeccccccceeEEEEccCC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~ 158 (349)
|.|.+|-+-.+.-...+.. ...++-|.+++|+.+|..++....||.|.+=.+...+.. +.++ ......+.|++
T Consensus 93 GlIiVWmlykgsW~EEMiN-nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk---g~~l~hv~ws~-- 166 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMIN-NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK---GQLLAHVLWSE-- 166 (1189)
T ss_pred ceEEEEeeecccHHHHHhh-CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc---hheccceeecc--
Confidence 9999999876643332222 224567899999999999999999999988776644332 1222 22345678888
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec----------CCCCCCcc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS----------KSTTKPLK 228 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~~~~~~~~ 228 (349)
|.+.++.+-..|.+.+||...+...... ....+..+
T Consensus 167 ----------------------------------D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~ki 212 (1189)
T KOG2041|consen 167 ----------------------------------DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKI 212 (1189)
T ss_pred ----------------------------------cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccc
Confidence 6677777778899999998754211111 01111223
Q ss_pred ceeee--------eccccEEEEeeeee-ecCce---eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC-------
Q 018858 229 GSQST--------SKVNIRDAEMEILD-QSGGK---RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK------- 289 (349)
Q Consensus 229 ~~~~~--------~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~------- 289 (349)
..+.| -||...+++..... ..+.+ +..++.. .....+..+.|+ ++|.+|+.++.|.
T Consensus 213 a~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~--dtgm~~vgakWn---h~G~vLAvcG~~~da~~~~d 287 (1189)
T KOG2041|consen 213 AEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV--DTGMKIVGAKWN---HNGAVLAVCGNDSDADEPTD 287 (1189)
T ss_pred cceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE--ecccEeecceec---CCCcEEEEccCcccccCccc
Confidence 33332 24555665422111 01110 1111111 112467888999 9999999998652
Q ss_pred --eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 290 --LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 290 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.|.+|..-. .++..+.-....|++++|-. .| +=++-..|+.|++=++
T Consensus 288 ~n~v~Fysp~G----------~i~gtlkvpg~~It~lsWEg-~g-LriA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 288 SNKVHFYSPYG----------HIVGTLKVPGSCITGLSWEG-TG-LRIAIAVDSFIYFANI 336 (1189)
T ss_pred cceEEEeccch----------hheEEEecCCceeeeeEEcC-Cc-eEEEEEecceEEEEee
Confidence 344444332 55666666777899999944 33 3333345666665443
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.37 E-value=7.8e-09 Score=95.64 Aligned_cols=306 Identities=15% Similarity=0.115 Sum_probs=184.0
Q ss_pred eeeeEEEEecCCCceEE-EeCCCC--cEEEEECCCCc---EEEEee-----cCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 16 ATATCCIASRDRPGFVA-SSGEDG--CICWFDLRSKD---VQLVTD-----VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~-t~~~dg--~i~vwd~~~~~---~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
..+...+|.+.....++ .+.... .|.+-...... .+..+. .....|.++.+.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 35677778776334433 333332 24444333222 233333 23467999999999999999999999999
Q ss_pred E----EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccc-----ccceeEEEEc
Q 018858 85 F----DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-----SSICSSVQFI 155 (349)
Q Consensus 85 w----d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~ 155 (349)
. +..+. ....+..+ +..|.+++|+||+..++..+.++.+.+.+ ++..++.+.. .+ ....-.+.|-
T Consensus 102 ~~~~~~~~~~-~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~-l~~~~~~~~~~VsVGWG 175 (928)
T PF04762_consen 102 VREDPDPDED-EIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVP-LDSDDFGESKHVSVGWG 175 (928)
T ss_pred EEccCCCCCc-eeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEee-cCccccCCCceeeeccC
Confidence 9 44432 22333333 57899999999999999999999998875 5555554443 11 1223334443
Q ss_pred cCC-CCCCCCCCC---------CC---CccccCCceeEEeecCcccccCCCCcEEEEEcC---C---CeEEEEEccCcee
Q 018858 156 PWK-PWEGLPENN---------GN---AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---D---GVVDVINIESELN 216 (349)
Q Consensus 156 ~~~-~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~ 216 (349)
... .+-|+.... .+ .+.......-..++|.. ||.+||+.+. . ..+++|+-+ +..
T Consensus 176 kKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG------DG~yFAVss~~~~~~~~R~iRVy~Re-G~L 248 (928)
T PF04762_consen 176 KKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG------DGEYFAVSSVEPETGSRRVIRVYSRE-GEL 248 (928)
T ss_pred cccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC------CCcEEEEEEEEcCCCceeEEEEECCC-ceE
Confidence 321 111111110 00 01111122344556665 9999998874 2 579999977 433
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeeec---------CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS---------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
... ..+....-..++|.|.|.++|+.-..... ..+..+....+......|..+.|+ +++..||..-.
T Consensus 249 ~st-SE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn---~ds~iLAv~~~ 324 (928)
T PF04762_consen 249 QST-SEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWN---SDSEILAVWLE 324 (928)
T ss_pred Eec-cccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEEC---CCCCEEEEEec
Confidence 332 22445556789999999999974431111 111122222222345689999999 89999999876
Q ss_pred CCeEEEEecCCCcceecccccceeeeccc--cccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
|. |.+|-..+.. ..++.... ....+..+.|+|.+...|...+.+|.+..++
T Consensus 325 ~~-vqLWt~~NYH--------WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 325 DR-VQLWTRSNYH--------WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CC-ceEEEeeCCE--------EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 65 9999998863 22322222 2234555899997777788888777776654
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.35 E-value=1e-09 Score=89.83 Aligned_cols=285 Identities=12% Similarity=0.119 Sum_probs=175.9
Q ss_pred eeeeEEEEecCCCceEEEeCCCC---------------cEEEEECCCCcEEEEeecCCCC--eE-EEEEecCCCEEEEEe
Q 018858 16 ATATCCIASRDRPGFVASSGEDG---------------CICWFDLRSKDVQLVTDVGNGP--VT-SLCFKSGNEDIIYVS 77 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg---------------~i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~ 77 (349)
..|.-+.|+|. ++||.|=+..+ .+.+||..++..+..+.....+ .. -+.|+-+.+++|-..
T Consensus 72 ~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 72 PDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred CCceecccCcc-cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 46788899998 89999865433 4999999999999988876665 44 578888888776553
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC--CEEEE-----EcCCCcEEEEEcCCceEeceecccccccee
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS--SFLAC-----ADDGGDVKIIDIRQHCLYKSLRAGHSSICS 150 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 150 (349)
...++|+++...-...++..+. ...+....|+|.+ ..|+. .+..+.+++|.+..+..+.+.. .....-.
T Consensus 151 -~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~ 226 (561)
T COG5354 151 -GSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSGV 226 (561)
T ss_pred -cCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeeccc
Confidence 4569999973222222333332 3678889999964 33443 4556789999988666554433 2223334
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccce
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 230 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (349)
.+.|++.|.++.. +.... +..+..++ ....++|++++........ ....++..
T Consensus 227 qLkW~~~g~~ll~------------------l~~t~---~ksnKsyf----gesnLyl~~~~e~~i~V~~--~~~~pVhd 279 (561)
T COG5354 227 QLKWQVLGKYLLV------------------LVMTH---TKSNKSYF----GESNLYLLRITERSIPVEK--DLKDPVHD 279 (561)
T ss_pred EEEEecCCceEEE------------------EEEEe---eeccccee----ccceEEEEeecccccceec--ccccccee
Confidence 5667773222110 00000 00011111 2356788888744333332 45678999
Q ss_pred eeeeccccEEEEeee-eeecCc---eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC---CeEEEEecCCCccee
Q 018858 231 QSTSKVNIRDAEMEI-LDQSGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQ 303 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~ 303 (349)
.+|.|.++.+++..+ ....+. .+..+...+ ....=+.+.|+ |.+++++.++-| |.+-+||.....
T Consensus 280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fs---p~~r~il~agF~nl~gni~i~~~~~rf--- 351 (561)
T COG5354 280 FTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYF--PEQKRNTIFFS---PHERYILFAGFDNLQGNIEIFDPAGRF--- 351 (561)
T ss_pred eeecccCCceeEEecccccceeecccccceEEec--CCccccccccc---CcccEEEEecCCccccceEEeccCCce---
Confidence 999999998887543 222221 122222222 23445678889 899999998765 789999998852
Q ss_pred cccccceeeeccccccceEEEEeecCCCCcEEEee------CCCeEEEeeC
Q 018858 304 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD------TSKVVKVYSI 348 (349)
Q Consensus 304 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~iw~~ 348 (349)
..+..+.+. ...-+.|+| +++++.+.. .|..|+||++
T Consensus 352 -----~~~~~~~~~--n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 352 -----KVAGAFNGL--NTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred -----EEEEEeecC--CceEeeccC-CceEEEecCCCcccccCcceEEEEe
Confidence 222233332 223346877 888877773 4789999997
No 270
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.34 E-value=3.4e-11 Score=89.92 Aligned_cols=167 Identities=13% Similarity=0.102 Sum_probs=107.0
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE-EEeecCCCCeEEEEEecCCCEEEEEeC-----CC
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-LVTDVGNGPVTSLCFKSGNEDIIYVSS-----GK 80 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg 80 (349)
+.+.+..|+++-.+-+.+-. ++-+++++.||.+.+++.+.-..+ ..+..-...-.+.++...++.+.++.. -+
T Consensus 81 ~~~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred ceeeeeccCCCCCccccccc-CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 44555555555444344433 567999999999999997652111 111111111122233334555544331 24
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEec-eeccccccceeEEEEccCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYK-SLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~ 158 (349)
..+.|+++..+... .... ....|++++-+|.. +.+++|+.||.+-+||.++..... .++ .|+.++..+-|+|.
T Consensus 160 ~~~a~~~~p~~t~~--~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~-ahk~~i~eV~FHpk- 234 (319)
T KOG4714|consen 160 NFYANTLDPIKTLI--PSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK-AHKAEIWEVHFHPK- 234 (319)
T ss_pred ceeeeccccccccc--cccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH-HhhhhhhheeccCC-
Confidence 56677766322111 1111 12448899999955 677889999999999999775443 455 89999999999995
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
++..|+++++||.+.-||..+
T Consensus 235 ----------------------------------~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 235 ----------------------------------NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ----------------------------------CchheeEecCCCcEEEEcCCC
Confidence 788999999999999999885
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=8.3e-11 Score=90.28 Aligned_cols=221 Identities=14% Similarity=0.181 Sum_probs=139.4
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-----EEEEeecCC------------CCeEEEEEecCC--CEEE
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVGN------------GPVTSLCFKSGN--EDII 74 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~ 74 (349)
..+.|+++.|... |.||++|...|.+.+|.-+... -...++.|. ..|..+.|..++ ..++
T Consensus 25 ead~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 3467999999988 8999999999999999865432 123355553 357788886644 3477
Q ss_pred EEeCCCeEEEEEccCCCc----------------------c-----------------cceee-ccCcccceEEEEEccC
Q 018858 75 YVSSGKEVKSFDVHMPAS----------------------W-----------------RPLES-YNYNKEEINQIVCNPK 114 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~----------------------~-----------------~~~~~-~~~~~~~v~~~~~~~~ 114 (349)
..+.|++|++|.+..... . .+-.. ...|.-.+.++.++.+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 778899999998754200 0 00000 1234556778889888
Q ss_pred CCEEEEEcCCCcEEEEEcCCce---Eeceecccc-----ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCc
Q 018858 115 SSFLACADDGGDVKIIDIRQHC---LYKSLRAGH-----SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186 (349)
Q Consensus 115 ~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
...++++ .|-.|.+|++.-.. .+-.++ .| ...|++..|+|.
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~----------------------------- 232 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPE----------------------------- 232 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHh-----------------------------
Confidence 8777765 45679999887221 111122 22 234677788884
Q ss_pred ccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcc
Q 018858 187 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA 266 (349)
Q Consensus 187 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 266 (349)
..+.+.-.+..|.|++-|++............. . ....--..-+.+-...
T Consensus 233 ------~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe-----~-------------------~~D~v~~~ff~eivsS 282 (460)
T COG5170 233 ------MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE-----L-------------------TIDGVDVDFFEEIVSS 282 (460)
T ss_pred ------HcceEEEecCCCcEEehhhhhhhhccCchhhhh-----h-------------------ccCcccchhHHHHhhh
Confidence 567777788899999999995321110000000 0 0000000112222457
Q ss_pred eEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 267 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 267 i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
|..+.|+ ++|+|+++-+. -+|++||++..+
T Consensus 283 ISD~kFs---~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 283 ISDFKFS---DNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hcceEEc---CCCcEEEEecc-ceEEEEeccccc
Confidence 8899999 89999998765 689999998764
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.32 E-value=9.3e-10 Score=89.38 Aligned_cols=142 Identities=17% Similarity=0.195 Sum_probs=109.4
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCC-cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDG-CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
+|...|.=..+..+ ++-++.|..|| .+-|+|.++++. ..+...-+.|.++..+++|++++++.....+.+.|++++.
T Consensus 357 ~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 357 GKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCCCceEEEEEccC-CcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 46777887788777 66889999998 899999987764 4555567889999999999999999988999999999874
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCC----cEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGG----DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
. +.+... ..+-|+.++|+|+++++|-+--+| .|+++|+..++....-. ..+.-.+-+|.|++.++
T Consensus 435 v-~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 435 V-RLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYL 503 (668)
T ss_pred e-eEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCcEE
Confidence 2 333322 246799999999999999776655 59999999887755433 33344566777776655
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.30 E-value=1.3e-10 Score=92.04 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=110.5
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcE----EEEeecCCCCeEEEEEecCCCEEEEEeCCC---eEEEEEccCCCc
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK---EVKSFDVHMPAS 92 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~ 92 (349)
.+..++. +++||.+..+....++++..... +.... -...-+++.+..+...+..+-.-| .+.+|....+
T Consensus 67 ~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-- 142 (390)
T KOG3914|consen 67 LVLTSDS-GRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-- 142 (390)
T ss_pred ccccCCC-ceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc--
Confidence 3445565 88888888877777777654332 22222 223344555555555555544444 4555554432
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
.....-+|-..++.++|+||+++++++..|..|++-.......+..+-.+|..-|..++..+
T Consensus 143 --~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~---------------- 204 (390)
T KOG3914|consen 143 --RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD---------------- 204 (390)
T ss_pred --CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc----------------
Confidence 22334467789999999999999999999999999888777777777668999999999886
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 218 (349)
+..|++|+.|++|++||+++++.+.
T Consensus 205 ---------------------~~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 205 ---------------------NYLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred ---------------------CceeeecCCCCcEEEEecccCCccc
Confidence 4668999999999999999986654
No 274
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.28 E-value=1.5e-07 Score=74.75 Aligned_cols=228 Identities=14% Similarity=0.104 Sum_probs=142.8
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEe-cCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK-SGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
++.|.+.++.++++--..+.|+.|+..+++.. .+.... ...+++. ++ ..++.+...+ +.++|..+++. ..+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~-~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKV-TVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEE-EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcE-EEEee
Confidence 57888854788888878899999999877653 233222 6778887 55 4555666554 55559887643 33333
Q ss_pred cc--C-cccceEEEEEccCCCEEEEEcCC--------CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 99 YN--Y-NKEEINQIVCNPKSSFLACADDG--------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 99 ~~--~-~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
.. . .....+.+++.|+|++.++.... |.|..++.. ++...... .-.....++|+|
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~----------- 143 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSP----------- 143 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEET-----------
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECC-----------
Confidence 21 1 34568899999999977765543 457777766 44433333 344567888988
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEE-EEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
+++.|+ +-+..+.|..|++......
T Consensus 144 -------------------------dg~~lyv~ds~~~~i~~~~~~~~~~~----------------------------- 169 (246)
T PF08450_consen 144 -------------------------DGKTLYVADSFNGRIWRFDLDADGGE----------------------------- 169 (246)
T ss_dssp -------------------------TSSEEEEEETTTTEEEEEEEETTTCC-----------------------------
T ss_pred -------------------------cchheeecccccceeEEEeccccccc-----------------------------
Confidence 677654 5667888999998742100
Q ss_pred eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEe
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 326 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (349)
....+....+....+..-.+++. .+|++.++....+.|.+++.+ + +++....-....+++++|
T Consensus 170 ----~~~~~~~~~~~~~~g~pDG~~vD---~~G~l~va~~~~~~I~~~~p~-G---------~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 170 ----LSNRRVFIDFPGGPGYPDGLAVD---SDGNLWVADWGGGRIVVFDPD-G---------KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp ----EEEEEEEEE-SSSSCEEEEEEEB---TTS-EEEEEETTTEEEEEETT-S---------CEEEEEE-SSSSEEEEEE
T ss_pred ----eeeeeeEEEcCCCCcCCCcceEc---CCCCEEEEEcCCCEEEEECCC-c---------cEEEEEcCCCCCEEEEEE
Confidence 00012222333333457889999 899988887788999999988 4 444444333458899999
Q ss_pred ecCCCCcEEEee
Q 018858 327 TPTESENLVVCD 338 (349)
Q Consensus 327 ~~~~~~~l~~~~ 338 (349)
--++.+.|+..+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 544555555443
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.27 E-value=3.3e-09 Score=79.95 Aligned_cols=234 Identities=17% Similarity=0.084 Sum_probs=144.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEE-ecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccc
Q 018858 28 PGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCF-KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEE 105 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 105 (349)
..+|+.||..|...+|...+.+. ......|...|+-..= .-....+..++.|.++++.+++-+.....+.. + .-.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-~--~~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-Q--NLT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec-c--ccc
Confidence 35799999999999999886553 3333334443322111 11223466788899999998875432222211 1 123
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEece-eccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEee
Q 018858 106 INQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKS-LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIA 183 (349)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (349)
+..++++++++++++.++...|..|.+.. ++.+.. ........-.+..|+.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~--------------------------- 213 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE--------------------------- 213 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc---------------------------
Confidence 78899999999999999999999998873 332222 2113444556677777
Q ss_pred cCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC
Q 018858 184 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 263 (349)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 263 (349)
+...+|++..||++.|||++....+.. ....+-..|
T Consensus 214 ---------~~~~FAv~~Qdg~~~I~DVR~~~tpm~-----------------------------------~~sstrp~h 249 (344)
T KOG4532|consen 214 ---------NDLQFAVVFQDGTCAIYDVRNMATPMA-----------------------------------EISSTRPHH 249 (344)
T ss_pred ---------CcceEEEEecCCcEEEEEecccccchh-----------------------------------hhcccCCCC
Confidence 788999999999999999997421111 112233458
Q ss_pred CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc-ceEEEEeecCCCCcEEEeeC
Q 018858 264 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~ 339 (349)
.+.+..+.|+|.++..-++++-. =+.+.+-|+++....+...... .....|.. .|..-.|+. +++.+.+.++
T Consensus 250 nGa~R~c~Fsl~g~lDLLf~sEh-fs~~hv~D~R~~~~~q~I~i~~--d~~~~~~tq~ifgt~f~~-~n~s~~v~~e 322 (344)
T KOG4532|consen 250 NGAFRVCRFSLYGLLDLLFISEH-FSRVHVVDTRNYVNHQVIVIPD--DVERKHNTQHIFGTNFNN-ENESNDVKNE 322 (344)
T ss_pred CCceEEEEecCCCcceEEEEecC-cceEEEEEcccCceeeEEecCc--cccccccccccccccccC-CCcccccccc
Confidence 99999999996444443444443 4789999999986543211101 11223333 366666654 4444444443
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=8.6e-09 Score=85.45 Aligned_cols=274 Identities=13% Similarity=0.056 Sum_probs=169.6
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-----eCC-----CeEEEE
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-----SSG-----KEVKSF 85 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~d-----g~i~iw 85 (349)
.+++..+++++ |++++.+. +..+.|++...+..+.+.... .+..+.|+|.+.+|.+= ..+ -.+.+|
T Consensus 35 ~~~~v~~~S~~-G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 35 RPCNVFAYSNN-GRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CcceeEEEcCC-CcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34566678876 77777655 568999999888654444322 78999999999998762 112 357899
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
+++++.....+.. . ...-++..|++|..+.+- -..+.+++|++.+.+.+..- .|...+..+.++|.
T Consensus 111 ~vet~~~~s~~q~-k--~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpg-------- 176 (566)
T KOG2315|consen 111 NVETGVQRSQIQK-K--MQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPG-------- 176 (566)
T ss_pred eeccceehhheeh-h--hhcCcccccccchhhhhh-hhcceEEEEecCCccceeee--eeccceeeEEecCC--------
Confidence 9997432222221 1 122268889988764432 23457999998864433222 35677888888882
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEE-----EcCCCeEEEEEccCce--eeeecCCCCCCccceeeeecccc
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-----AKGDGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
+....+++ .+.-+.++||.+.... .....+.-....--.+.|++-|.
T Consensus 177 --------------------------p~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 177 --------------------------PEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT 230 (566)
T ss_pred --------------------------CCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCc
Confidence 12233332 3445689999887321 11122222334445678888888
Q ss_pred EEEEeeeeeecCc-------eeeeeeee------ec-CCCcceEEEEEeeecCCccEEEEe--eCCCeEEEEecCCCcce
Q 018858 239 RDAEMEILDQSGG-------KRLHLDYS------VG-GHTAAASCVAFSMFGERGKYLISG--GNDKLVKVWDCSRFQGV 302 (349)
Q Consensus 239 ~~~~~~~~~~~~~-------~~~~~~~~------~~-~h~~~i~~i~~~~~~~~~~~l~s~--~~d~~i~vwd~~~~~~~ 302 (349)
-|++....+.... ....++.+ +. ...++|.++.|+ ++++-++.+ -.--.+.|||++..
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~---~s~~EF~VvyGfMPAkvtifnlr~~--- 304 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWS---PSGREFAVVYGFMPAKVTIFNLRGK--- 304 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEEC---CCCCEEEEEEecccceEEEEcCCCC---
Confidence 7766554443321 11111111 11 136799999999 788765544 35678999999984
Q ss_pred ecccccceeeeccccccceEEEEeecCCCCcEEEeeCC---CeEEEeeCC
Q 018858 303 QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS---KVVKVYSIS 349 (349)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~ 349 (349)
++..+ -.++=+++-|+| .|++|+.+|.+ |.+-|||+.
T Consensus 305 -------~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 305 -------PVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred -------EeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEecc
Confidence 43333 234556777877 88888888754 899999974
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.25 E-value=6.9e-11 Score=100.74 Aligned_cols=254 Identities=16% Similarity=0.185 Sum_probs=165.4
Q ss_pred eeEEEEecCC-CceEEEeCCCCcEEEEECCC---CcEEEEeecCCCCeEEEEEecCC-CEEEEEeCCCeEEEEEccCCCc
Q 018858 18 ATCCIASRDR-PGFVASSGEDGCICWFDLRS---KDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 18 i~~~~~~~~~-~~~l~t~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
|-.+.|+|.. ..+-+.......-.+|++.. ...-..+.+|...|+.+.|.|.. ..+++++.|-.+..||+++..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~- 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH- 148 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-
Confidence 6667777652 12333333345567898753 33345677899999999999854 568899999999999999754
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
.++.....-......++|+-....+.+.+....|++||++.+ .++..++ +|...+..++|+.-
T Consensus 149 -~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~-------------- 212 (1081)
T KOG0309|consen 149 -RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRF-------------- 212 (1081)
T ss_pred -cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec-ccceeeehHHHhhh--------------
Confidence 344444334466788999876655666667778999999954 5677888 78888888888762
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 251 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
....+.+.+.||+|++||..+...
T Consensus 213 ---------------------~~s~~~s~~~d~tvkfw~y~kSt~----------------------------------- 236 (1081)
T KOG0309|consen 213 ---------------------KYSEIMSSSNDGTVKFWDYSKSTT----------------------------------- 236 (1081)
T ss_pred ---------------------hhhhhcccCCCCceeeeccccccc-----------------------------------
Confidence 345677889999999999986311
Q ss_pred eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec-ccccceeeeccccccceEEEEeecCC
Q 018858 252 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT-SINNDLLIKNINLNKKVNWLCTTPTE 330 (349)
Q Consensus 252 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (349)
+..+.. ....+|..-.+.|++ +|.++.---.+..+.+++.++....+. ......+..+.+|.+.|....|-...
T Consensus 237 ---e~~~~v-tt~~piw~~r~~Pfg-~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 237 ---ESKRTV-TTNFPIWRGRYLPFG-EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRK 311 (1081)
T ss_pred ---ccceec-cccCcceeccccccC-ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcc
Confidence 111111 123455555555442 344433222233555555444322211 11125678899999998877664321
Q ss_pred ---------CCcEEEeeCCCeEEEeeCC
Q 018858 331 ---------SENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 331 ---------~~~l~~~~~dg~i~iw~~~ 349 (349)
.-.|+|=+.|..+++|.+.
T Consensus 312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 312 ECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred cccCCCCccceeEEEeecCCceEeeecc
Confidence 1259999999999999863
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=3.4e-10 Score=96.41 Aligned_cols=230 Identities=10% Similarity=0.075 Sum_probs=153.6
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEe--ecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT--DVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.-++|.||.+.|.-+.|+.+ .+.|-|+..+|.|.+|-+-.+.....+ ....+.|.+++|+.+|..|+..-.||.|.+
T Consensus 63 mNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred hhhhhccCcceEEEEEeccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 45789999999999999987 788999999999999998877643322 224567899999999999999999998887
Q ss_pred EEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec-----------cccccceeEE
Q 018858 85 FDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR-----------AGHSSICSSV 152 (349)
Q Consensus 85 wd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------~~~~~~v~~~ 152 (349)
=.++.++.. +.++. .....+.|++|.+.++.+-.+|.+.+||.+..-. ..+. ......+..+
T Consensus 142 GsvdGNRIwgKeLkg-----~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~-~Kl~~~c~Vn~tg~~s~~~~kia~i 215 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKG-----QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFE-RKLEKDCEVNGTGIFSNFPTKIAEI 215 (1189)
T ss_pred Eeeccceecchhcch-----heccceeecccHHHHHhhhcCCcEEEecccccHH-HhhhhceEEeeeeeecCCCccccce
Confidence 776643211 11111 2345789999999999999999999999763211 1111 0111123333
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
.|... |.....|+...|+++-..|.+.+..-.+...+.....+ ..+....
T Consensus 216 ~w~~g----------------------------~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgak 265 (1189)
T KOG2041|consen 216 EWNTG----------------------------PYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAK 265 (1189)
T ss_pred eeccC----------------------------ccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecce
Confidence 33320 11112337788999999999988877665444443332 5667889
Q ss_pred eeccccEEEEeeeeeecCce-----------eeeeeeeecCCCcceEEEEEe
Q 018858 233 TSKVNIRDAEMEILDQSGGK-----------RLHLDYSVGGHTAAASCVAFS 273 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~h~~~i~~i~~~ 273 (349)
|+++|..+++.|........ -++.+.+++-....|+++.|-
T Consensus 266 Wnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWE 317 (1189)
T KOG2041|consen 266 WNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWE 317 (1189)
T ss_pred ecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEc
Confidence 99999999987764332221 112233444445567777775
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.25 E-value=2.6e-10 Score=90.38 Aligned_cols=159 Identities=20% Similarity=0.244 Sum_probs=110.5
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEccCCCc-ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEE---EEEcCCce
Q 018858 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK---IIDIRQHC 136 (349)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~---i~d~~~~~ 136 (349)
...+..++.++++|.+..+....++++..... .+.+..... ....+.+.+..+......+...|.++ +|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34455678899999998888888888875432 233333221 23344455555555555444444444 44444444
Q ss_pred EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 137 LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
+...+ +|-+.++.++|+| |+++++++..|..|++-.+...
T Consensus 144 ~~~~l--GhvSml~dVavS~------------------------------------D~~~IitaDRDEkIRvs~ypa~-- 183 (390)
T KOG3914|consen 144 CEPIL--GHVSMLLDVAVSP------------------------------------DDQFIITADRDEKIRVSRYPAT-- 183 (390)
T ss_pred cchhh--hhhhhhheeeecC------------------------------------CCCEEEEecCCceEEEEecCcc--
Confidence 43333 6999999999999 7899999999999999877642
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeee-ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS-VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
..+.. ..||..-|..++.- ++..|+++|.|++|++||
T Consensus 184 --------------------------------------f~IesfclGH~eFVS~isl~----~~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 184 --------------------------------------FVIESFCLGHKEFVSTISLT----DNYLLLSGSGDKTLRLWD 221 (390)
T ss_pred --------------------------------------cchhhhccccHhheeeeeec----cCceeeecCCCCcEEEEe
Confidence 22233 34799999999986 566799999999999999
Q ss_pred cCCCcce
Q 018858 296 CSRFQGV 302 (349)
Q Consensus 296 ~~~~~~~ 302 (349)
+.++++.
T Consensus 222 ~~sgk~L 228 (390)
T KOG3914|consen 222 ITSGKLL 228 (390)
T ss_pred cccCCcc
Confidence 9999765
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.24 E-value=4.9e-09 Score=85.92 Aligned_cols=275 Identities=11% Similarity=0.004 Sum_probs=167.6
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC-------------
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK------------- 80 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------- 80 (349)
-.-++..+++||. |.+|++.... .|.+|.-.....+..+. | ..|..+.|+|++++|.+=+...
T Consensus 31 ~~~p~~~~~~SP~-G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPL-GTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCc-chheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 4567888999998 8999987764 58999988776555555 2 4689999999999999865432
Q ss_pred --eEEEEEccCCCcccceeeccCcccc--eE-EEEEccCCCEEEEEcCCCcEEEEEcCCceEe-ceeccccccceeEEEE
Q 018858 81 --EVKSFDVHMPASWRPLESYNYNKEE--IN-QIVCNPKSSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQF 154 (349)
Q Consensus 81 --~i~iwd~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~ 154 (349)
.+.+||+.++... ..+...... .+ -+.|+-+.++.|-- ....++|+++ ++... ..++......+....|
T Consensus 107 ~n~~~vwd~~sg~iv---~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 107 KNNVFVWDIASGMIV---FSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred cCceeEEeccCceeE---eeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEe
Confidence 4999999987443 333322222 33 67888887776644 2346999997 33221 1111012346778888
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE-----EEcCCCeEEEEEccCceeeeecCCCCCCccc
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-----VAKGDGVVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
+|.+ ++..|+ ..+..+++++|.+..+..+.. ....+..-.
T Consensus 182 sP~~----------------------------------n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t-k~lfk~~~~ 226 (561)
T COG5354 182 SPEG----------------------------------NHDELAYWTPEKLNKPAMVRILSIPKNSVLVT-KNLFKVSGV 226 (561)
T ss_pred cCCC----------------------------------CCceEEEEccccCCCCcEEEEEEccCCCeeee-eeeEeeccc
Confidence 8831 222233 235678899999885543332 122233445
Q ss_pred eeeeeccccEEEEeeeeeecCc------eeeeee-------eeecCCCcceEEEEEeeecCCccEEEEe--eCCCeEEEE
Q 018858 230 SQSTSKVNIRDAEMEILDQSGG------KRLHLD-------YSVGGHTAAASCVAFSMFGERGKYLISG--GNDKLVKVW 294 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-------~~~~~h~~~i~~i~~~~~~~~~~~l~s~--~~d~~i~vw 294 (349)
.+.|.+.|.++++....+-... ..+.+. .....-.++|....|. |.++.+++. -.+-.+.++
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~---p~S~~F~vi~g~~pa~~s~~ 303 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWE---PLSSRFAVISGYMPASVSVF 303 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeec---ccCCceeEEecccccceeec
Confidence 7889999999886332222100 011111 1111346789999999 666655443 478889999
Q ss_pred ecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC---CeEEEeeC
Q 018858 295 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS---KVVKVYSI 348 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~ 348 (349)
|++.. +. +......=+.+.|+| .+++++.++.| |.+-+|+.
T Consensus 304 ~lr~N----------l~--~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 304 DLRGN----------LR--FYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred ccccc----------eE--EecCCcccccccccC-cccEEEEecCCccccceEEecc
Confidence 99884 22 112223334455655 56666666544 56666653
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=4.1e-08 Score=77.44 Aligned_cols=241 Identities=15% Similarity=0.189 Sum_probs=139.5
Q ss_pred CCcEEEEECCCC--cE-EEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCC-CcccceeeccCcccceEEE
Q 018858 37 DGCICWFDLRSK--DV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMP-ASWRPLESYNYNKEEINQI 109 (349)
Q Consensus 37 dg~i~vwd~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~ 109 (349)
..-|++|++.+. +. ...+-...+.++-++|+|+.++|.++..+ |.|.-|.+... .....+........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999998743 22 11222356778899999999999888654 67888877642 1223333332233445889
Q ss_pred EEccCCCEEEEEcC-CCcEEEEEcCC-ceEe---ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeec
Q 018858 110 VCNPKSSFLACADD-GGDVKIIDIRQ-HCLY---KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAI 184 (349)
Q Consensus 110 ~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (349)
++++++++++++.. .|.|.++-++. |.+. ..++ |.+.. | . .......++...+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~------p-------------~-~rQ~~~h~H~a~~ 152 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSG------P-------------H-ERQESPHVHSANF 152 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCC------C-------------C-ccccCCccceeee
Confidence 99999999988764 57899998864 3322 2222 33220 0 0 0011112333444
Q ss_pred CcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC
Q 018858 185 PDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 263 (349)
Q Consensus 185 ~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 263 (349)
.| ++++|++.. .--+|.+|++..+..... ....++ .
T Consensus 153 tP------~~~~l~v~DLG~Dri~~y~~~dg~L~~~------------------------------------~~~~v~-~ 189 (346)
T COG2706 153 TP------DGRYLVVPDLGTDRIFLYDLDDGKLTPA------------------------------------DPAEVK-P 189 (346)
T ss_pred CC------CCCEEEEeecCCceEEEEEcccCccccc------------------------------------cccccC-C
Confidence 44 888888876 334799999986432111 111122 2
Q ss_pred CcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCccee-cccccceeeecccc--ccceEEEEeecCCCCcEEEee-
Q 018858 264 TAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQ-TSINNDLLIKNINL--NKKVNWLCTTPTESENLVVCD- 338 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~- 338 (349)
....+-|.|+ |++++..... .+++|-+|..+...... ..+ .+....... ....-.|.+++ +|++|+++.
T Consensus 190 G~GPRHi~FH---pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ--~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNR 263 (346)
T COG2706 190 GAGPRHIVFH---PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ--TIDTLPEDFTGTNWAAAIHISP-DGRFLYASNR 263 (346)
T ss_pred CCCcceEEEc---CCCcEEEEEeccCCEEEEEEEcCCCceEEEee--eeccCccccCCCCceeEEEECC-CCCEEEEecC
Confidence 3445788999 8999887766 47899999988742111 000 111111122 23445566766 888888874
Q ss_pred CCCeEEEeeC
Q 018858 339 TSKVVKVYSI 348 (349)
Q Consensus 339 ~dg~i~iw~~ 348 (349)
....|.+|.+
T Consensus 264 g~dsI~~f~V 273 (346)
T COG2706 264 GHDSIAVFSV 273 (346)
T ss_pred CCCeEEEEEE
Confidence 2235655543
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=5.1e-11 Score=98.46 Aligned_cols=176 Identities=13% Similarity=0.120 Sum_probs=123.6
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC-Ccc---cceeeccCcccceEEEEEccCCCEEEEEcCCCc
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASW---RPLESYNYNKEEINQIVCNPKSSFLACADDGGD 126 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (349)
++.+.+|...|..++--.+.+.+++++.|++|++|.++.. ... ....+++.|+.+|.++.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 4567789989988877778888999999999999999742 112 2445678899999999999888877764 788
Q ss_pred EEEEEcCCceEeceecc-ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE-cCCC
Q 018858 127 VKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDG 204 (349)
Q Consensus 127 i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg 204 (349)
|++||.--++.+.++.. ...+.+..+...|+ -+...+..| +...
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~n----------------------------------v~~~iliAgcsaeS 851 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN----------------------------------VDRHILIAGCSAES 851 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEeccc----------------------------------Ccchheeeeccchh
Confidence 99999876666554331 12223333333331 023344444 6788
Q ss_pred eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEE
Q 018858 205 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS 284 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s 284 (349)
+|+++|.+.....- ...+..-.+..+.+.+++.. +.|++++.
T Consensus 852 TVKl~DaRsce~~~-----------------------------------E~kVcna~~Pna~~R~iaVa---~~GN~lAa 893 (1034)
T KOG4190|consen 852 TVKLFDARSCEWTC-----------------------------------ELKVCNAPGPNALTRAIAVA---DKGNKLAA 893 (1034)
T ss_pred hheeeeccccccee-----------------------------------eEEeccCCCCchheeEEEec---cCcchhhH
Confidence 99999999642100 01112223455678999999 89999999
Q ss_pred eeCCCeEEEEecCCCc
Q 018858 285 GGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 285 ~~~d~~i~vwd~~~~~ 300 (349)
+-..|+|.+.|.++++
T Consensus 894 ~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 894 ALSNGCIAILDARNGK 909 (1034)
T ss_pred HhcCCcEEEEecCCCc
Confidence 9999999999999984
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=4.2e-08 Score=83.45 Aligned_cols=141 Identities=5% Similarity=0.001 Sum_probs=87.0
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCc-eEEE-eCC--CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPG-FVAS-SGE--DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SG 79 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~-~l~t-~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 79 (349)
+...+.+.... .+....|+|+ ++ .++. ... +..|+++|+.+++...... ..+......|+|||+.++... .+
T Consensus 178 g~~~~~~~~~~-~~~~p~wSpD-G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 178 LTYQKVIVKGG-LNIFPKWANK-EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred CCceeEEccCC-CeEeEEECCC-CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccC
Confidence 44445454333 6778899999 55 3553 322 3579999998887644433 455566788999998876543 33
Q ss_pred --CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CC--cEEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 --KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 --g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
..|.++|+..++ ...+.... .......|+|||+.|+..+. .+ .|++.|+.+++..+... . .. ....|
T Consensus 255 g~~~Iy~~dl~~g~-~~~LT~~~---~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~-g~--~~~~~ 326 (419)
T PRK04043 255 GQPDIYLYDTNTKT-LTQITNYP---GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-H-GK--NNSSV 326 (419)
T ss_pred CCcEEEEEECCCCc-EEEcccCC---CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-C-CC--cCceE
Confidence 478888887654 23333222 22345689999988776653 33 58888888776533322 1 11 12478
Q ss_pred cc
Q 018858 155 IP 156 (349)
Q Consensus 155 ~~ 156 (349)
+|
T Consensus 327 SP 328 (419)
T PRK04043 327 ST 328 (419)
T ss_pred CC
Confidence 88
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.19 E-value=7.2e-08 Score=81.87 Aligned_cols=263 Identities=10% Similarity=0.032 Sum_probs=137.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcc--c
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTS-LCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK--E 104 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~ 104 (349)
+..++.++.+|.++.+|..+++.+....... .+.+ ... .+..++.++.++.|..||.++++............ .
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4567788889999999999999887765432 2221 122 34567778889999999998876443322211000 0
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeec
Q 018858 105 EINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAI 184 (349)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (349)
........ +..++.+..++.+..+|+++++.+.+...........+ .. ...+.-
T Consensus 182 ~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~--~~----------------------~~~~~~ 235 (377)
T TIGR03300 182 GSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTEL--ER----------------------LVDVDG 235 (377)
T ss_pred CCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCch--hh----------------------hhccCC
Confidence 00011111 24677888889999999999887655431000000000 00 000000
Q ss_pred CcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee----cCceeeeeeeee
Q 018858 185 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSV 260 (349)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 260 (349)
.|.. .+..+++++.+|.+..||.++++..-...... ...++. ++..+.+.. .++ ......+.+...
T Consensus 236 ~p~~----~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~---~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 236 DPVV----DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS---YQGPAV--DDNRLYVTD-ADGVVVALDRRSGSELWKN 305 (377)
T ss_pred ccEE----ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC---ccCceE--eCCEEEEEC-CCCeEEEEECCCCcEEEcc
Confidence 0000 24567777788999999998876544332111 111111 122222110 000 000111111111
Q ss_pred cCC-CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE-EEeecCCCCcEEEee
Q 018858 261 GGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTESENLVVCD 338 (349)
Q Consensus 261 ~~h-~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~ 338 (349)
... ......... .+..+++++.||.|+++|..++ +.+.....+...+.. .++ . ++ .|+.++
T Consensus 306 ~~~~~~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~tG---------~~~~~~~~~~~~~~~sp~~-~-~~-~l~v~~ 368 (377)
T TIGR03300 306 DELKYRQLTAPAV-----VGGYLVVGDFEGYLHWLSREDG---------SFVARLKTDGSGIASPPVV-V-GD-GLLVQT 368 (377)
T ss_pred ccccCCccccCEE-----ECCEEEEEeCCCEEEEEECCCC---------CEEEEEEcCCCccccCCEE-E-CC-EEEEEe
Confidence 110 111122222 3568888999999999999988 444444433333322 222 2 33 599999
Q ss_pred CCCeEEEe
Q 018858 339 TSKVVKVY 346 (349)
Q Consensus 339 ~dg~i~iw 346 (349)
.||.|+.|
T Consensus 369 ~dG~l~~~ 376 (377)
T TIGR03300 369 RDGDLYAF 376 (377)
T ss_pred CCceEEEe
Confidence 99999876
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.17 E-value=1.7e-07 Score=71.86 Aligned_cols=236 Identities=9% Similarity=0.055 Sum_probs=126.4
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCC--cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEecee
Q 018858 64 LCFKSGNEDIIYVSSGKEVKSFDVHMPA--SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL 141 (349)
Q Consensus 64 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 141 (349)
++.+.+|+.||.. .|..|.|-..++.- ........+.....-..++|+||+..||.+...|+|++||+...+ +..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 4566788766654 46667666544320 111111111122345679999999999999999999999987543 3333
Q ss_pred cccc------ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc-
Q 018858 142 RAGH------SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE- 214 (349)
Q Consensus 142 ~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 214 (349)
.... ...|..+.|.+. .-...=...|++-..+|.++=|-+..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~------------------------------~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt 130 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEY------------------------------KKSAQWSYELLVINYRGQLRSYLVSVGT 130 (282)
T ss_pred CcccccCCccccceeeeEeecc------------------------------ccccccceeEEEEeccceeeeEEEEccc
Confidence 3111 233444445441 000000224556667777777665321
Q ss_pred ----e--eeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC
Q 018858 215 ----L--NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 288 (349)
Q Consensus 215 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d 288 (349)
+ ....+.......+..+.++|..+.|++.|........ -++-...+++-.+-.-.|..+ .++..+|
T Consensus 131 ~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~-------s~a~~~GLtaWRiL~~~Pyyk-~v~~~~~ 202 (282)
T PF15492_consen 131 NQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGM-------SKASSCGLTAWRILSDSPYYK-QVTSSED 202 (282)
T ss_pred CCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcc-------ccccccCceEEEEcCCCCcEE-EccccCc
Confidence 1 1223444556677888888888877755544332111 011122333333320001111 1222222
Q ss_pred Ce------EEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 289 KL------VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 289 ~~------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+. -.+|.+.+. +.........+.|..+..+| ||+.|++...+|.|.+|+++
T Consensus 203 ~~~~~~~~~~~~~~~~~---------~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 203 DITASSKRRGLLRIPSF---------KFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred cccccccccceeeccce---------eeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecC
Confidence 21 123333321 22222233567899999988 89999999999999999986
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.14 E-value=6.2e-08 Score=91.48 Aligned_cols=234 Identities=9% Similarity=0.126 Sum_probs=132.3
Q ss_pred eeEEEEecCCCceEEE-eCCCCcEEEEECCCCcEEEEeecC-----------------CCCeEEEEEec-CCCEEEEEeC
Q 018858 18 ATCCIASRDRPGFVAS-SGEDGCICWFDLRSKDVQLVTDVG-----------------NGPVTSLCFKS-GNEDIIYVSS 78 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t-~~~dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~ 78 (349)
-..+++.++ ++.|+. -..+..|+++|..++. +.++.+. -.....++++| ++..+++.+.
T Consensus 626 P~GIavd~~-gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAK-KNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCC-CCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 467888887 554444 4445789999987655 3333210 11245789999 4555566677
Q ss_pred CCeEEEEEccCCCccccee------eccC------cccceEEEEEccCCCEE-EEEcCCCcEEEEEcCCceEeceecccc
Q 018858 79 GKEVKSFDVHMPASWRPLE------SYNY------NKEEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGH 145 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~------~~~~------~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~ 145 (349)
++.|++||..++... .+. ...+ .-.....++++|+++.| ++-+.++.|++||+.++....... +.
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g-g~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG-GD 781 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe-cc
Confidence 889999998764321 110 0000 11245679999998744 555667899999998765321110 00
Q ss_pred cc-ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC
Q 018858 146 SS-ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 224 (349)
Q Consensus 146 ~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 224 (349)
.. ......|.. .+..... ........+++.+ +|+++++-..+++|++||..++..........
T Consensus 782 ~~~~~~l~~fG~-------~dG~g~~---~~l~~P~Gvavd~------dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~ 845 (1057)
T PLN02919 782 PTFSDNLFKFGD-------HDGVGSE---VLLQHPLGVLCAK------DGQIYVADSYNHKIKKLDPATKRVTTLAGTGK 845 (1057)
T ss_pred cccCcccccccC-------CCCchhh---hhccCCceeeEeC------CCcEEEEECCCCEEEEEECCCCeEEEEeccCC
Confidence 00 000000100 0000000 0111223455555 78888888899999999998753322111000
Q ss_pred CCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
...++|. ...+.-.....++++ ++|+++++-+.++.|++||+.+++.
T Consensus 846 -------~G~~dG~--------------------~~~a~l~~P~GIavd---~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 846 -------AGFKDGK--------------------ALKAQLSEPAGLALG---ENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -------cCCCCCc--------------------ccccccCCceEEEEe---CCCCEEEEECCCCEEEEEECCCCcc
Confidence 0000110 112223356789999 8999989888999999999988653
No 287
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.4e-08 Score=80.86 Aligned_cols=87 Identities=16% Similarity=0.072 Sum_probs=72.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i 82 (349)
+++..+-+.+|...|..++|+|.+..++..++.+..|+|.|+++...+..+..+ ..+.+++|..+.. +|..|-..|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 345566778888999999999985558889999999999999999888888877 7899999987655 46666678999
Q ss_pred EEEEccCCC
Q 018858 83 KSFDVHMPA 91 (349)
Q Consensus 83 ~iwd~~~~~ 91 (349)
.|||++..+
T Consensus 261 lvyD~R~~~ 269 (463)
T KOG1645|consen 261 LVYDMRQPE 269 (463)
T ss_pred EEEEccCCC
Confidence 999998654
No 288
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.12 E-value=3.3e-07 Score=77.87 Aligned_cols=259 Identities=11% Similarity=0.032 Sum_probs=140.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
+..++.++.+|.+..+|..+++.+............... ++..++.++.++.+..+|.++++....... ...+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~~~ 138 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL----SSEVL 138 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc----Cceee
Confidence 457888888999999999999998876654432222222 467788888999999999988765433221 11221
Q ss_pred E-EEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCc
Q 018858 108 Q-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186 (349)
Q Consensus 108 ~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
+ ... .+..++.++.++.++.||.++++.+.+++ .... ...+.-.. +|
T Consensus 139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~-~~~~~~~~----------------------------sp 186 (377)
T TIGR03300 139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTP-ALTLRGSA----------------------------SP 186 (377)
T ss_pred cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCC-ceeecCCC----------------------------CC
Confidence 1 111 24567778889999999999999887766 2221 11110000 00
Q ss_pred ccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCC---Cc------c-ceeeeeccccEEEEee--eeeecCceee
Q 018858 187 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK---PL------K-GSQSTSKVNIRDAEME--ILDQSGGKRL 254 (349)
Q Consensus 187 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~------~-~~~~~~~~~~~~~~~~--~~~~~~~~~~ 254 (349)
.. .+..++.+..+|.+..+|.++++..-....... .. + ....+. ++..++... ..-.......
T Consensus 187 ~~----~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 187 VI----ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EE----ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCC
Confidence 00 124677788889999999988765432211100 00 0 111111 222222110 0000000111
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc-ceEEEEeecCCCCc
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESEN 333 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 333 (349)
+.+.... . ........ .+..++.++.||.|+.+|..+++... ....... ...+... .+..
T Consensus 262 ~~~W~~~-~-~~~~~p~~-----~~~~vyv~~~~G~l~~~d~~tG~~~W---------~~~~~~~~~~ssp~i---~g~~ 322 (377)
T TIGR03300 262 RVLWKRD-A-SSYQGPAV-----DDNRLYVTDADGVVVALDRRSGSELW---------KNDELKYRQLTAPAV---VGGY 322 (377)
T ss_pred cEEEeec-c-CCccCceE-----eCCEEEEECCCCeEEEEECCCCcEEE---------ccccccCCccccCEE---ECCE
Confidence 1111111 0 11112222 34577777889999999999884322 2111111 1112122 2347
Q ss_pred EEEeeCCCeEEEeeC
Q 018858 334 LVVCDTSKVVKVYSI 348 (349)
Q Consensus 334 l~~~~~dg~i~iw~~ 348 (349)
|++++.+|.++++|.
T Consensus 323 l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 323 LVVGDFEGYLHWLSR 337 (377)
T ss_pred EEEEeCCCEEEEEEC
Confidence 888899999999875
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=4.8e-10 Score=87.30 Aligned_cols=166 Identities=14% Similarity=0.213 Sum_probs=113.8
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-----eEeceeccccccc
Q 018858 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-----CLYKSLRAGHSSI 148 (349)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~ 148 (349)
++.+.+..|-+-|++++.. +.+. .++.|.++.|...++++..|+++|.|..+|++.+ .+...+. |++.
T Consensus 228 fs~G~sqqv~L~nvetg~~----qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ----QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSS 300 (425)
T ss_pred ecccccceeEEEEeecccc----cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcc
Confidence 4455567788888887532 1222 3577888999988899999999999999999854 3444454 7777
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCcc
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK 228 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 228 (349)
|+++..... ++++|++.+.+|+|++||++..++
T Consensus 301 vtslq~Lq~-----------------------------------s~q~LmaS~M~gkikLyD~R~~K~------------ 333 (425)
T KOG2695|consen 301 VTSLQILQF-----------------------------------SQQKLMASDMTGKIKLYDLRATKC------------ 333 (425)
T ss_pred hhhhhhhcc-----------------------------------ccceEeeccCcCceeEeeehhhhc------------
Confidence 887765542 578889999999999999996321
Q ss_pred ceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEE--EEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccc
Q 018858 229 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC--VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI 306 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~--i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 306 (349)
..-+..+.+|...-.- +.+. +....+++++.|...|||.++.+
T Consensus 334 -------------------------~~~V~qYeGHvN~~a~l~~~v~---~eeg~I~s~GdDcytRiWsl~~g------- 378 (425)
T KOG2695|consen 334 -------------------------KKSVMQYEGHVNLSAYLPAHVK---EEEGSIFSVGDDCYTRIWSLDSG------- 378 (425)
T ss_pred -------------------------ccceeeeecccccccccccccc---cccceEEEccCeeEEEEEecccC-------
Confidence 1235566676432222 2233 56778999999999999999987
Q ss_pred ccceeeecc----ccccceEEEEeecCC
Q 018858 307 NNDLLIKNI----NLNKKVNWLCTTPTE 330 (349)
Q Consensus 307 ~~~~~~~~~----~~~~~v~~~~~~~~~ 330 (349)
.++.... .....+.++++....
T Consensus 379 --hLl~tipf~~s~~e~d~~sv~~~sr~ 404 (425)
T KOG2695|consen 379 --HLLCTIPFPYSASEVDIPSVAFDSRL 404 (425)
T ss_pred --ceeeccCCCCccccccccceehhccc
Confidence 3433322 223356667765543
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=5.6e-10 Score=95.40 Aligned_cols=203 Identities=16% Similarity=0.213 Sum_probs=141.9
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc-ccceeeccCcccceEEEEEccCC--CEEEEEcCCCcEEEEEcCC
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~ 134 (349)
.+++..+.++|.|+-++.++.-| +.+.|+...-. .+-+..+. .-.|-.+.|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccC--cchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 46778889999999999999877 66677765321 11122211 1245567787643 4444444555566898862
Q ss_pred --ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 135 --HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 135 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
.+.+.-+..+|...++.+.|+|+ ....+++++.|-.+..||++
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q-----------------------------------~pdVlatcsvdt~vh~wd~r 145 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQ-----------------------------------HPDVLATCSVDTYVHAWDMR 145 (1081)
T ss_pred CCccceEEEEecCccceeccccCCC-----------------------------------CCcceeeccccccceeeecc
Confidence 23333333389999999999996 67889999999999999999
Q ss_pred CceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 213 SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
+.. .++.....-...-..+.|+ ....-+.+.+..+.|+
T Consensus 146 Sp~---------------------------------------~p~ys~~~w~s~asqVkwn---yk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 146 SPH---------------------------------------RPFYSTSSWRSAASQVKWN---YKDPNVLASSHGNDIF 183 (1081)
T ss_pred CCC---------------------------------------cceeeeecccccCceeeec---ccCcchhhhccCCceE
Confidence 742 2233333223345678888 4444444555667899
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+||++.+. .++....+|...|+.++|+......+.+++.||+|+.||.
T Consensus 184 vwd~r~gs--------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 184 VWDLRKGS--------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred EEeccCCC--------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 99999875 5667778899999999997755557999999999999985
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.08 E-value=1e-07 Score=86.42 Aligned_cols=138 Identities=9% Similarity=0.127 Sum_probs=89.0
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc----CC
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH----MP 90 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~ 90 (349)
.+.|.++.|..+ .+.++.+..+|.|.+-|.++.... ....-...|.+++|+|+++.++..+..+++.+-+-. ..
T Consensus 68 d~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLAD-TNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecc-cceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 357999999988 677777888899999988776542 223345789999999999999999988877664321 00
Q ss_pred Cc----------------ccceeeccC---------------------cccceEEEEEccCCCEEEEE-----cCCCcEE
Q 018858 91 AS----------------WRPLESYNY---------------------NKEEINQIVCNPKSSFLACA-----DDGGDVK 128 (349)
Q Consensus 91 ~~----------------~~~~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~-----~~dg~i~ 128 (349)
+. .+.-..+.+ ..+.=+.+.|--||+++|+. .....|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 00 000001110 01122458999999999873 3337899
Q ss_pred EEEcCCceEeceeccccccceeEEEEcc
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+||-+ +..-..-. ...+.-.+++|-|
T Consensus 226 V~drE-g~Lns~se-~~~~l~~~LsWkP 251 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSE-PVEGLQHSLSWKP 251 (1265)
T ss_pred Eeccc-chhhcccC-cccccccceeecC
Confidence 99966 43322222 3344456788988
No 292
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.08 E-value=4.3e-07 Score=71.93 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=87.9
Q ss_pred CCcEEEEECCCCcEEEEeecCC--CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 37 DGCICWFDLRSKDVQLVTDVGN--GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
+|+|..||..+++.+....... ....+. ..+++.++++++.++.|..||..+++....... ....... . ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~--~--~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGA--P--VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSG--E--EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccce--e--eec
Confidence 6899999999999988876421 222211 233567788888999999999988865443332 1111111 1 123
Q ss_pred CCEEEEEcCCCcEEEEEcCCceEecee-ccccccc---eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccccc
Q 018858 115 SSFLACADDGGDVKIIDIRQHCLYKSL-RAGHSSI---CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADML 190 (349)
Q Consensus 115 ~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
+..+++++.++.++.+|.++++.+... . ..... ........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~---------------------------------- 120 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYL-TSSPPAGVRSSSSPAV---------------------------------- 120 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE--SSCTCSTB--SEEEE----------------------------------
T ss_pred ccccccccceeeeEecccCCcceeeeecc-ccccccccccccCceE----------------------------------
Confidence 456666667889999999999998874 3 22111 11111211
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 191 DKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 191 ~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
.+..++++..++.|..+|+++++.
T Consensus 121 --~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 121 --DGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp --ETTEEEEEETCSEEEEEETTTTEE
T ss_pred --ecCEEEEEeccCcEEEEecCCCcE
Confidence 467788888899999999998743
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=4.2e-08 Score=74.13 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=106.4
Q ss_pred eEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEE
Q 018858 30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI 109 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 109 (349)
-+..++.|.++++.+++.+.....+....-.+.+++++++++++++.+....|..|.+........-.....-.+.-.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 35667778888888876554332222222347889999999999999999999999987543221111222223455678
Q ss_pred EEccCCCEEEEEcCCCcEEEEEcCCceEec----eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 110 VCNPKSSFLACADDGGDVKIIDIRQHCLYK----SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 110 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
.|+.....+|++..||.+.|||++...... .-++.|.+.++.+.|++-|
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g--------------------------- 262 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG--------------------------- 262 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC---------------------------
Confidence 999999999999999999999999543222 1123688899999999832
Q ss_pred cccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 186 DADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 186 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
--.+|+..-.-+.+.+.|+++..
T Consensus 263 -------~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 263 -------LLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred -------cceEEEEecCcceEEEEEcccCc
Confidence 12455555667889999999854
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.5e-09 Score=85.45 Aligned_cols=222 Identities=14% Similarity=0.079 Sum_probs=148.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC--C-cEEEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEcc
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--K-DVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDVH 88 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 88 (349)
-|.+.|+.+.... .+++.+++.||.++.|.-.. + +.+..+..|...+.+++.+-++-.+.+.+. |..++++|++
T Consensus 7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 4888888876654 58999999999999997543 1 224455668888999999999999999887 9999999998
Q ss_pred CCCcccceeeccCcccceEEEEEccC-C-CEEEE-EcCCCcEEEEEcCCce-EeceeccccccceeEEEEccCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPK-S-SFLAC-ADDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~l~~-~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
+-.....++.. ...+.+..+. ++. . ..+++ .-.++.+.++|-.... ....++.-|..+|..+.+.|
T Consensus 85 n~DminmiKL~-~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-------- 154 (558)
T KOG0882|consen 85 NFDMINMIKLV-DLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-------- 154 (558)
T ss_pred ccchhhhcccc-cCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec--------
Confidence 64322222221 1112222221 221 1 23443 3467889999977432 33333336889999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc-eeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.+..+++....|.|.-|..+.. +.+. ..+-|....
T Consensus 155 ----------------------------a~Ds~vSiD~~gmVEyWs~e~~~qfPr----------~~l~~~~K~------ 190 (558)
T KOG0882|consen 155 ----------------------------AGDSAVSIDISGMVEYWSAEGPFQFPR----------TNLNFELKH------ 190 (558)
T ss_pred ----------------------------cccceeeccccceeEeecCCCcccCcc----------ccccccccc------
Confidence 7888999999999999998841 0000 001111100
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
...+..+........++.|+ |++..+.+-+.|..|++++..+++..+
T Consensus 191 ----------eTdLy~f~K~Kt~pts~Efs---p~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 191 ----------ETDLYGFPKAKTEPTSFEFS---PDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ----------cchhhcccccccCccceEEc---cccCcccccCcccEEEEEEeccchhhh
Confidence 01122233345677899999 899999999999999999999987554
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.07 E-value=1.9e-06 Score=68.22 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=94.3
Q ss_pred eEEEEecCCCceEEEeCCCCc-EEEEECCCCcEEEEeecCCCCeE--EEEEecCCCEEEEEeC-----CCeEEEEEccCC
Q 018858 19 TCCIASRDRPGFVASSGEDGC-ICWFDLRSKDVQLVTDVGNGPVT--SLCFKSGNEDIIYVSS-----GKEVKSFDVHMP 90 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~ 90 (349)
..++.+|..+..++.+-.-|+ ..+||..+++....+....+.-. .-.|+++|++|++.-. .|.|-|||...
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~- 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR- 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-
Confidence 457788865777777777665 68999999998777655333322 2579999999988654 37999999983
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcC------------------CCcEEEEEcCCceEeceec---cccccce
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADD------------------GGDVKIIDIRQHCLYKSLR---AGHSSIC 149 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~---~~~~~~v 149 (349)
....+..+..+.-....+.+.|+++.|+++.. +-++...|.++++.+.+.. ..|...+
T Consensus 87 -~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 87 -GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred -CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 35666677666666778899999988877632 2245556666777666533 0245567
Q ss_pred eEEEEcc
Q 018858 150 SSVQFIP 156 (349)
Q Consensus 150 ~~~~~~~ 156 (349)
..+++.+
T Consensus 166 RHLa~~~ 172 (305)
T PF07433_consen 166 RHLAVDG 172 (305)
T ss_pred eeEEecC
Confidence 7777766
No 296
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.4e-07 Score=78.44 Aligned_cols=230 Identities=13% Similarity=0.125 Sum_probs=141.6
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-----------CCcEEE
Q 018858 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-----------GGDVKI 129 (349)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i 129 (349)
=+-+.|||.|.||++--..| |.+|--++ ...+..+. | ..|..+.|+|..++|++-+. ...+.|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGES---FDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCcc---HHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 35689999999999988766 88996543 33334442 3 56889999999999998653 256999
Q ss_pred EEcCCceEeceecccc--cccee-EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 130 IDIRQHCLYKSLRAGH--SSICS-SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 130 ~d~~~~~~~~~~~~~~--~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
||+++|...+.+. .. ...+. -+.|+- +++++|.-.. ..|
T Consensus 287 WDI~tG~lkrsF~-~~~~~~~~WP~frWS~------------------------------------DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 287 WDIATGLLKRSFP-VIKSPYLKWPIFRWSH------------------------------------DDKYFARMTG-NSI 328 (698)
T ss_pred EEccccchhccee-ccCCCccccceEEecc------------------------------------CCceeEEecc-ceE
Confidence 9999999888877 31 22222 345666 7888887665 468
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeee--------eeecCCCcceEEEEEeeecCC
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD--------YSVGGHTAAASCVAFSMFGER 278 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~h~~~i~~i~~~~~~~~ 278 (349)
.||+..+ -.+...+...-..|....|+|.+..||+-.-....+.....++ ++..-|.-.-..+.|- .+
T Consensus 329 sIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ---k~ 404 (698)
T KOG2314|consen 329 SIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ---KS 404 (698)
T ss_pred EEEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEec---cC
Confidence 8999876 3333334444567889999999999996333222222222221 1111121122234455 66
Q ss_pred ccEEEEee----------CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC--CeEEEe
Q 018858 279 GKYLISGG----------NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS--KVVKVY 346 (349)
Q Consensus 279 ~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iw 346 (349)
|.||+.-- .=..+-|+.++.. .+..........|...+|-|...++.+..+.+ .++.+|
T Consensus 405 gdyLcvkvdR~tK~~~~g~f~n~eIfrireK---------dIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY 475 (698)
T KOG2314|consen 405 GDYLCVKVDRHTKSKVKGQFSNLEIFRIREK---------DIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFY 475 (698)
T ss_pred CcEEEEEEEeeccccccceEeeEEEEEeecc---------CCCceeeecchheeeeeeccCCCeEEEEEccccccceeEE
Confidence 77776421 1123556666554 33334445677899999988444443333332 455555
Q ss_pred e
Q 018858 347 S 347 (349)
Q Consensus 347 ~ 347 (349)
.
T Consensus 476 ~ 476 (698)
T KOG2314|consen 476 A 476 (698)
T ss_pred E
Confidence 4
No 297
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.05 E-value=9.6e-07 Score=72.33 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=61.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCC----------CCcEEEEECCCCcEEEEeecCCC-------CeEEEEEe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGE----------DGCICWFDLRSKDVQLVTDVGNG-------PVTSLCFK 67 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~----------dg~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~ 67 (349)
++.+.++..-..+-. + ++|+ ++.|+.+.. +..|.+||..+.+.+..+..... ....++++
T Consensus 37 ~~v~g~i~~G~~P~~-~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 37 GRVLGMTDGGFLPNP-V-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CEEEEEEEccCCCce-e-ECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 344444543333322 3 8898 666665544 78999999999999888874322 23478899
Q ss_pred cCCCEEEEEeC--CCeEEEEEccCCCcccce
Q 018858 68 SGNEDIIYVSS--GKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 68 ~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~ 96 (349)
|+|+++++... +..|.+.|+.+++....+
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 99999998763 689999999987544433
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.04 E-value=4.1e-10 Score=61.04 Aligned_cols=39 Identities=33% Similarity=0.450 Sum_probs=36.6
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFD 44 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd 44 (349)
+++++++++|.+.|++++|+|+ +.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 3578899999999999999999 89999999999999997
No 299
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=9.2e-10 Score=85.76 Aligned_cols=132 Identities=13% Similarity=0.132 Sum_probs=104.8
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-----cEEEEeecCCCCeEEEEEec-CCCEEEEEeCCCe
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-----DVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKE 81 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 81 (349)
.+.|. -+..|.++.|... +++++.|..+|.|...|++.+ .+...+ .|...|+++..-. ++++|.+.+.+|.
T Consensus 246 ~qsf~-sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gk 322 (425)
T KOG2695|consen 246 QQSFQ-SKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGK 322 (425)
T ss_pred ccccc-cchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCc
Confidence 33444 4577999999987 789999999999999999865 223344 3899999998876 7889999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEE--EEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQ--IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
|++||++.-++.+.+..+.+|...-.- +...+.+..++++++|-..+||.++.+..+.+++
T Consensus 323 ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 323 IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred eeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 999999976666667788777543332 3445667889999999999999999999988877
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=3.2e-10 Score=98.83 Aligned_cols=144 Identities=18% Similarity=0.190 Sum_probs=109.8
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC--eEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK--EVK 83 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~ 83 (349)
...++++.|+...+|++|+-. .+.|+.|+..|.|+++++.+|.......+|..+|+.+.-+.+|..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 446678889999999999997 79999999999999999999999999999999999999999999887766443 467
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc---ccccceeEEEEcc
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---GHSSICSSVQFIP 156 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~ 156 (349)
+|++.+ .......+ ..-.++.|+....+-+.|+......+||++++.++.++-. +....-.+..|+|
T Consensus 1171 LW~~~s--~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1171 LWDASS--TGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred Hhcccc--ccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 899874 22333333 3456778887665556677667899999999887766320 1222335667777
No 301
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.02 E-value=1.4e-08 Score=79.33 Aligned_cols=194 Identities=10% Similarity=0.147 Sum_probs=121.0
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCCce-----Eeceecccc------------ccceeEEEEccCCCCCCCCCC
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-----LYKSLRAGH------------SSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~ 166 (349)
.-+.++.|...|.+|++|..+|.|.+|.-.... ....++ .| ...|..+.|.+++
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~-------- 96 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDG-------- 96 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCC--------
Confidence 568899999999999999999999999744221 122222 22 2245556666531
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee-cCCC---CCCcccee---eeeccccE
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR-SKST---TKPLKGSQ---STSKVNIR 239 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~---~~~~~~~~---~~~~~~~~ 239 (349)
+...++..+.|.+|++|.+........ ...+ ....+.++ ...+-...
T Consensus 97 --------------------------n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ 150 (433)
T KOG1354|consen 97 --------------------------NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLE 150 (433)
T ss_pred --------------------------CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccce
Confidence 456777888999999999986432220 0000 01111111 12221111
Q ss_pred EEEeeeeeecCceeeeeeeee-cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 240 DAEMEILDQSGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
+. ..+.+.+ .+|...|++|.++ .|...++++. |-.|.+|+++-..+......-++ ..+....
T Consensus 151 ve------------a~prRv~aNaHtyhiNSIS~N---sD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP-~nmEeLt 213 (433)
T KOG1354|consen 151 VE------------ASPRRVYANAHTYHINSISVN---SDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKP-ANMEELT 213 (433)
T ss_pred ee------------eeeeeeccccceeEeeeeeec---CccceEeecc-ceeeeeccccccCCceeEEEccc-cCHHHHH
Confidence 11 1333333 3688899999999 8988888775 78899999886543321100000 0111234
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..|++..|+|.....++-.++.|+|++-||+
T Consensus 214 eVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 214 EVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred HHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 4688999999888888888999999999985
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=3.9e-08 Score=84.97 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=96.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCC-----------CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEec---C
Q 018858 4 AEAKPRRLRGHKATATCCIASRDR-----------PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS---G 69 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~-----------~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~ 69 (349)
+.+.++.+..|+..|+.+.|.|.+ .-+||++...|.|.+||...+..+..+..|..++..++|-+ +
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 457788999999999999998742 12577888889999999999888888999999999999976 3
Q ss_pred C-CEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcC
Q 018858 70 N-EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 70 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 133 (349)
. ..|++......+.+|+..+|+.... +........|+.+.| +.+.+..-+..|.+.+-+.-
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk---~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWK---YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeec---cccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 3 4567777788999999998754322 222345677889988 55666666666777766643
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.99 E-value=1.6e-06 Score=66.59 Aligned_cols=219 Identities=13% Similarity=0.103 Sum_probs=121.6
Q ss_pred EEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEeec---CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 21 CIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDV---GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
++.+.+ |++||.-- |..|.|=..++. ..+...+. ....=+.++|+||+..||.+...|+|+++|+.... ...
T Consensus 3 ~~~~~~-Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSSD-GKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecCC-CcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 445555 77777654 566777655432 22222222 23345679999999999999999999999987421 221
Q ss_pred eee---cc-CcccceEEEEEccC------CCEEEEEcCCCcEEEEEcCC-----ceEeceec--cccccceeEEEEccCC
Q 018858 96 LES---YN-YNKEEINQIVCNPK------SSFLACADDGGDVKIIDIRQ-----HCLYKSLR--AGHSSICSSVQFIPWK 158 (349)
Q Consensus 96 ~~~---~~-~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~--~~~~~~v~~~~~~~~~ 158 (349)
+.. .. .....|..+.|.+. ...|++-..+|.++-|-+.. .+....+. ......|.++.|+|
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-- 157 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-- 157 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC--
Confidence 111 11 11245566666442 12455556677777776532 12222222 12355788888887
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC-----------eEEEEEccCceeeeecCCCCCCc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-----------VVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
..++|++|+... -+.-|.+-++.
T Consensus 158 ----------------------------------~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~------------ 191 (282)
T PF15492_consen 158 ----------------------------------KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS------------ 191 (282)
T ss_pred ----------------------------------CCCEEEEeccCCCCCccccccccCceEEEEcCCC------------
Confidence 566777665321 13344433321
Q ss_pred cceeeeeccccEEEEeeeeeec-Cc--------eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 228 KGSQSTSKVNIRDAEMEILDQS-GG--------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
|..+.+.. ...+.. .. ...............|..+..+ |||.+||+...+|.|.+|++.+
T Consensus 192 -------Pyyk~v~~-~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS---Pdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 192 -------PYYKQVTS-SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS---PDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred -------CcEEEccc-cCccccccccccceeeccceeeeeccccCCCceEEEEEC---CCCCEEEEEEcCCeEEEEecCc
Confidence 11111110 000000 00 0011111112245689999999 9999999999999999999998
Q ss_pred Ccc
Q 018858 299 FQG 301 (349)
Q Consensus 299 ~~~ 301 (349)
-..
T Consensus 261 L~~ 263 (282)
T PF15492_consen 261 LRL 263 (282)
T ss_pred chh
Confidence 743
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=6.9e-08 Score=83.73 Aligned_cols=151 Identities=14% Similarity=0.167 Sum_probs=109.2
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
.+.+.|++++ +++|+-|.-+|.+++++... .. .+...|... ..+|+++++|+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3567788886 57999999999999998763 32 333334433 5689999999999999999888764332
Q ss_pred ceeeccCcccceEEEEEccC-----CCEEEEEcCCCcEEEEEcC--CceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 95 PLESYNYNKEEINQIVCNPK-----SSFLACADDGGDVKIIDIR--QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
. ..+ ..++.+++++|+ .+.+++|+..| +.++.-+ ..+..-.+. ...++|.++.|
T Consensus 108 ~-~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W------------- 168 (846)
T KOG2066|consen 108 Q-YDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKW------------- 168 (846)
T ss_pred e-Eec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-cCccceEEEEe-------------
Confidence 2 222 478999999997 57899999988 7777633 111111344 56788999998
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
.|+++|-++.+| |++||..+++.+....
T Consensus 169 -------------------------~g~lIAWand~G-v~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 169 -------------------------RGNLIAWANDDG-VKVYDTPTRQRLTNIP 196 (846)
T ss_pred -------------------------cCcEEEEecCCC-cEEEeccccceeeccC
Confidence 578999988877 8999999876554443
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.98 E-value=4.7e-07 Score=71.70 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=76.2
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcc-cce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK-EEI 106 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v 106 (349)
+..+++++.++.|+.||..+|+.+..+.. ..++.... ...+..+++++.++.+..+|.++++............ ...
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 46677778899999999999999888775 22222211 2245567777788899999999887655432211000 111
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 107 NQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
........+..++++..++.|..+|+++|+.+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEEEEee
Confidence 222222237788888889999999999999988776
No 306
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1.2e-06 Score=74.66 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=67.1
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCE-EEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEcc
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED-IIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (349)
..|.+=|.+... .+.+.... ......|+|+|+. ++..+.+ ..|.++|+.+++. +.+... .+......|+|
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~~---~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIASS---QGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EEEecC---CCcEEeeEECC
Confidence 355555554333 23333233 7778999999985 6654443 4789999987643 333332 34456678999
Q ss_pred CCCEEEEE-cC--CCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 114 KSSFLACA-DD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 114 ~~~~l~~~-~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
||+.++.. +. +..|+++|+.+++.. .+. .+........|+|
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT-~~~~~d~~p~~SP 286 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTLT-QIT-NYPGIDVNGNFVE 286 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcEE-Ecc-cCCCccCccEECC
Confidence 99877643 33 346888898777543 333 2333334557888
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=4.1e-07 Score=79.72 Aligned_cols=199 Identities=14% Similarity=0.129 Sum_probs=127.6
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCC-eEEEEEecCCCEEEEEeCCC-----eEEEEEccCC
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP-VTSLCFKSGNEDIIYVSSGK-----EVKSFDVHMP 90 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 90 (349)
.|+| |++. +..++.|+.+|.|.+.+- .-+.+..++.+... |..+.......+|++.+.|+ .|+||+++..
T Consensus 27 ~isc--~~s~-~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSS-TGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCC-CceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4444 5666 788999999999888873 23445777777776 55554444446788877764 5999999753
Q ss_pred Cc---ccce---ee----ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC---CceEeceeccccccceeEEEEccC
Q 018858 91 AS---WRPL---ES----YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR---QHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 91 ~~---~~~~---~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
+. ...+ .. .+....++.+++.+.+-+.+|+|-.+|.|..+.-. .......+......+|+++++..
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~- 181 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS- 181 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-
Confidence 11 1122 11 12235678899999999999999999999988522 11111112213567899999887
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcE-EEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI-CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
++.. +++++ -..|.+|.+....
T Consensus 182 -----------------------------------d~~s~lFv~T-t~~V~~y~l~gr~--------------------- 204 (933)
T KOG2114|consen 182 -----------------------------------DGKSVLFVAT-TEQVMLYSLSGRT--------------------- 204 (933)
T ss_pred -----------------------------------CCceeEEEEe-cceeEEEEecCCC---------------------
Confidence 4554 33333 3568899988520
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.....+..|...++|-.++ +....+++++. ..+++|+.+..
T Consensus 205 ------------------p~~~~ld~~G~~lnCss~~---~~t~qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 205 ------------------PSLKVLDNNGISLNCSSFS---DGTYQFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred ------------------cceeeeccCCccceeeecC---CCCccEEEecC-ceEEEEcCCCc
Confidence 1223456677788999998 33332444443 47999998875
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=2.2e-07 Score=80.51 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=117.8
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCC------------CEEEEEeCCCeE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN------------EDIIYVSSGKEV 82 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~i 82 (349)
...-.++.|+|. | ++|-|+. ..|.+-|..+.+.++.++.|...|+.+.|.|.. -.||++...|.|
T Consensus 15 ~sN~~A~Dw~~~-G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 15 RSNRNAADWSPS-G-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccccCcc-c-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 334677889986 3 6776664 578999999999999999999999999998722 135666677999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEcc---CC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNP---KS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (349)
.+||+..+. .+..++.+...+..++|-+ +. ..|+.-.....+.+|+..+|+...... .......|+.+.|-
T Consensus 92 il~d~~~~s---~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~~DPf- 166 (1062)
T KOG1912|consen 92 ILVDFVLAS---VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFRVDPF- 166 (1062)
T ss_pred EEEEehhhh---hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeeeeCCC-
Confidence 999998653 3344555678888999866 33 456666667789999999999988877 45556778999883
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
+.+.+..-+..|.+.+-+.-
T Consensus 167 ----------------------------------d~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 167 ----------------------------------DSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred ----------------------------------CcceEEEEccCceEEEEecc
Confidence 66777777777877776654
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.94 E-value=5.9e-09 Score=56.39 Aligned_cols=38 Identities=32% Similarity=0.686 Sum_probs=35.8
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
+++..+.+|...|++++|+ |++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~---~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWS---PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEE---TTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEe---cccccceeeCCCCEEEEEC
Confidence 5678899999999999999 8999999999999999997
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.90 E-value=7.5e-08 Score=84.69 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=133.3
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
+..++.|+-...+..+|+.+.+..+......+.|.-++. +++++.+|...|+|.+-|.++ .+.+..+.+|.+.+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s---~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS---FETIHTFDAHSGSIS 221 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc---Cceeeeeecccccee
Confidence 556777877788999999988877766655556666654 578899999999999999886 466777888888887
Q ss_pred EEEEccCCCEEEEEcC---------CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCce
Q 018858 108 QIVCNPKSSFLACADD---------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAF 178 (349)
Q Consensus 108 ~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (349)
++.. .|+.|++++. |.-|+|||+|..+.+.-+. -+ ....-+.|.|.
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~-~~P~flrf~Ps--------------------- 276 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FP-YGPQFLRFHPS--------------------- 276 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc-cc-cCchhhhhccc---------------------
Confidence 6655 6888888875 4458999999877665554 22 22345667762
Q ss_pred eEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeee
Q 018858 179 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 258 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
-...+++++..|...+-|..+-. ....-+.
T Consensus 277 --------------l~t~~~V~S~sGq~q~vd~~~ls------------------------------------NP~~~~~ 306 (1118)
T KOG1275|consen 277 --------------LTTRLAVTSQSGQFQFVDTATLS------------------------------------NPPAGVK 306 (1118)
T ss_pred --------------ccceEEEEecccceeeccccccC------------------------------------CCcccee
Confidence 34568888889999998844310 0001111
Q ss_pred eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 259 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 259 ~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
.+......+..+.++ +++..++.|..+|.|.+|.
T Consensus 307 ~v~p~~s~i~~fDiS---sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 307 MVNPNGSGISAFDIS---SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEccCCCcceeEEec---CCCceEEEecccCcEeeec
Confidence 222233458899999 8999999999999999998
No 311
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.88 E-value=4.4e-06 Score=71.37 Aligned_cols=222 Identities=8% Similarity=0.064 Sum_probs=128.0
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCe-----EEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCc-
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPV-----TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYN- 102 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 102 (349)
..++.+..+|.+..+|.++++.+.......... .+... .+..++.++.+|.+..+|.++++...........
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~ 238 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG 238 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCC
Confidence 356667778999999999999988776431111 01111 1345777788899999998887643332211000
Q ss_pred cc---ceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCc
Q 018858 103 KE---EINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPA 177 (349)
Q Consensus 103 ~~---~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (349)
.. ....+.-+| .+..++.++.+|.+..+|..+++.+.+.. . .. ...+..
T Consensus 239 ~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~-~~-~~~~~~----------------------- 292 (394)
T PRK11138 239 ATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-Y-GS-VNDFAV----------------------- 292 (394)
T ss_pred ccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-C-CC-ccCcEE-----------------------
Confidence 00 000111122 24567777788999999999998776544 1 11 111111
Q ss_pred eeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeee
Q 018858 178 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD 257 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
.+..+++++.+|.+..+|..+++..-..
T Consensus 293 ---------------~~~~vy~~~~~g~l~ald~~tG~~~W~~------------------------------------- 320 (394)
T PRK11138 293 ---------------DGGRIYLVDQNDRVYALDTRGGVELWSQ------------------------------------- 320 (394)
T ss_pred ---------------ECCEEEEEcCCCeEEEEECCCCcEEEcc-------------------------------------
Confidence 3556777788999999999875211000
Q ss_pred eeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE-EEeecCCCCcEEE
Q 018858 258 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTESENLVV 336 (349)
Q Consensus 258 ~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~ 336 (349)
..+. + ....+..+. +.+|+.++.||.|++.|..+++ .+....-....+.+ ..+ . ++ .|+.
T Consensus 321 ~~~~-~-~~~~sp~v~-----~g~l~v~~~~G~l~~ld~~tG~---------~~~~~~~~~~~~~s~P~~-~-~~-~l~v 381 (394)
T PRK11138 321 SDLL-H-RLLTAPVLY-----NGYLVVGDSEGYLHWINREDGR---------FVAQQKVDSSGFLSEPVV-A-DD-KLLI 381 (394)
T ss_pred cccC-C-CcccCCEEE-----CCEEEEEeCCCEEEEEECCCCC---------EEEEEEcCCCcceeCCEE-E-CC-EEEE
Confidence 0000 1 111222222 3467778899999999999984 33322222222222 122 1 33 7999
Q ss_pred eeCCCeEEEeeCC
Q 018858 337 CDTSKVVKVYSIS 349 (349)
Q Consensus 337 ~~~dg~i~iw~~~ 349 (349)
++.||.++.++++
T Consensus 382 ~t~~G~l~~~~~~ 394 (394)
T PRK11138 382 QARDGTVYAITRP 394 (394)
T ss_pred EeCCceEEEEeCC
Confidence 9999999998764
No 312
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.85 E-value=1.6e-05 Score=60.47 Aligned_cols=114 Identities=9% Similarity=0.109 Sum_probs=82.4
Q ss_pred EecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCc
Q 018858 23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYN 102 (349)
Q Consensus 23 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 102 (349)
..++...+++.|+..+.+.--|..+|+.++.-.. ...+.+-+.- -|++++.|...|.+++.+++++..........
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-- 93 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-- 93 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh--
Confidence 3444356788888889999999999988765331 2233332222 47889999999999999999986555444432
Q ss_pred ccceE-EEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 103 KEEIN-QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 103 ~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.|. .....+++..+.+|+.|++.+..|.++..++.+.+
T Consensus 94 --~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 94 --TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred --hhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 222 23456789999999999999999999888777666
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1e-07 Score=77.25 Aligned_cols=212 Identities=10% Similarity=0.105 Sum_probs=142.7
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCcEEEEEcCCc
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQH 135 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~ 135 (349)
|...|+.+.-+ -.+++.+++.||.++.|--..-.-...+..+..|-..+.+++.+-++.++.+.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 55666655443 4678999999999999975432233445556677788889999999999999777 999999999876
Q ss_pred eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC---cEEEE-EcCCCeEEEEEc
Q 018858 136 CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KICVV-AKGDGVVDVINI 211 (349)
Q Consensus 136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~-~~~dg~i~i~d~ 211 (349)
..+.-++ .......+.|... .| ..+++ ...+|.+.++|-
T Consensus 87 DminmiK--L~~lPg~a~wv~s-----------------------------------kGd~~s~IAVs~~~sg~i~VvD~ 129 (558)
T KOG0882|consen 87 DMINMIK--LVDLPGFAEWVTS-----------------------------------KGDKISLIAVSLFKSGKIFVVDG 129 (558)
T ss_pred chhhhcc--cccCCCceEEecC-----------------------------------CCCeeeeEEeecccCCCcEEECC
Confidence 5544333 1111112222110 12 13333 347789999998
Q ss_pred cCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeE
Q 018858 212 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291 (349)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i 291 (349)
....+ +....-.-|..+|.++.+. +-+..+++....|.|
T Consensus 130 ~~d~~--------------------------------------q~~~fkklH~sPV~~i~y~---qa~Ds~vSiD~~gmV 168 (558)
T KOG0882|consen 130 FGDFC--------------------------------------QDGYFKKLHFSPVKKIRYN---QAGDSAVSIDISGMV 168 (558)
T ss_pred cCCcC--------------------------------------ccceecccccCceEEEEee---ccccceeecccccee
Confidence 75310 2223334588999999999 788899999999999
Q ss_pred EEEecCCCcce------ecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 292 KVWDCSRFQGV------QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 292 ~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.-|..+...+. .......-+..+........++.++| ++..+.+-+.|..|+++++
T Consensus 169 EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 169 EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred EeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEe
Confidence 99998842111 11111122333444566788999988 8888999999999999875
No 314
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.79 E-value=6.9e-09 Score=87.56 Aligned_cols=203 Identities=14% Similarity=0.166 Sum_probs=129.9
Q ss_pred eeeeEEEEecCC-CceEEEeCCCCcEEEEECCCCcE--EEEeecCCCCeEEEEEec-CCCEEEEEe----CCCeEEEEEc
Q 018858 16 ATATCCIASRDR-PGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKS-GNEDIIYVS----SGKEVKSFDV 87 (349)
Q Consensus 16 ~~i~~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~iwd~ 87 (349)
..+.|+++.-+. ..+++.|..+|.|.+-.++...- -...+++..+.++++|++ |.+.||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 457777766542 36788999999999988764322 334567888999999998 445566553 2468999999
Q ss_pred cCCCccccee--eccC-cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE-eceeccccccceeEEEEccCCCCCCC
Q 018858 88 HMPASWRPLE--SYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 88 ~~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
.++-. .+.. .+.. -.....+++|-.+.+++.+|.....+.++|++.... ...+ ....+..+...|-
T Consensus 137 ~s~lt-vPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~------ 206 (783)
T KOG1008|consen 137 NSLLT-VPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPF------ 206 (783)
T ss_pred ccccC-CCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCC------
Confidence 86411 1111 1111 224456788888889999999999999999984322 1222 2334666677663
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE-ccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN-IESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
.+++++.- .||.|.+|| .++-+
T Consensus 207 -----------------------------~~nY~cs~-~dg~iAiwD~~rnie--------------------------- 229 (783)
T KOG1008|consen 207 -----------------------------SPNYFCSN-SDGDIAIWDTYRNIE--------------------------- 229 (783)
T ss_pred -----------------------------CCCceecc-ccCceeeccchhhhc---------------------------
Confidence 56777665 499999999 44311
Q ss_pred eeeeeecCceeeeeeeeecC----CCcceEEEEEeeecCCccEEEEeeC-CCeEEEEecCCC
Q 018858 243 MEILDQSGGKRLHLDYSVGG----HTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRF 299 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~----h~~~i~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~ 299 (349)
.++..+.. ....+..++|+|+. . ..+++... .++|+.||+...
T Consensus 230 ------------npl~~i~~~~N~~~~~l~~~aycPtr-t-glla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 230 ------------NPLQIILRNENKKPKQLFALAYCPTR-T-GLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred ------------cHHHHHhhCCCCcccceeeEEeccCC-c-chhhhhccCcceEEEeccccc
Confidence 11111111 11248899999743 3 35555554 488999998653
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=7.9e-07 Score=77.44 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=89.0
Q ss_pred CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecC-----CCEEEEEeCCCeEEEEEccCCCcccceeeccC
Q 018858 27 RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG-----NEDIIYVSSGKEVKSFDVHMPASWRPLESYNY 101 (349)
Q Consensus 27 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (349)
.|.++++|+.||.+.|-.+.+.+....+. ...++.+++++|+ .+.+++|+.-| +.++.-+=-...... .+..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~ 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec
Confidence 38999999999999999998888776666 4578999999997 56789999888 777653311111222 2334
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
..++|.++.|. |+++|-++.+| |++||+..++.+..++ .....++.=.|-|
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~-~p~~~~R~e~fpp 209 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIP-PPSQSVRPELFPP 209 (846)
T ss_pred CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccC-CCCCCCCcccCCC
Confidence 46889999996 67888888776 9999999988887776 3334444333333
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.74 E-value=2.6e-07 Score=81.45 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=108.8
Q ss_pred CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---------CeEEEEEccCCCccccee
Q 018858 27 RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---------KEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 27 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~ 97 (349)
+++++++|...|+|.+-|..+.+.++++..|.+.|..+.. .|+.|++++.. .-|+|||++..+...++.
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 3789999999999999999999999999999999987665 58899999854 468999999765554444
Q ss_pred eccCcccceEEEEEccC-CCEEEEEcCCCcEEEEE---cCCceE-eceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 98 SYNYNKEEINQIVCNPK-SSFLACADDGGDVKIID---IRQHCL-YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d---~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
.. .....+.|+|. ...+++.+..|...+-| +.+... +..+. .....+..+.+++
T Consensus 264 ~~----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSs---------------- 322 (1118)
T KOG1275|consen 264 FP----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN-PNGSGISAFDISS---------------- 322 (1118)
T ss_pred cc----cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEc-cCCCcceeEEecC----------------
Confidence 32 22356788885 36788888889999998 333311 11122 2334478888888
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
+++.++.|..+|.|.+|.-+
T Consensus 323 --------------------n~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 323 --------------------NGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred --------------------CCceEEEecccCcEeeecCC
Confidence 89999999999999999843
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=8.9e-07 Score=77.74 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=66.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
++++.+... -.-.+++++|+|. .-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.|.
T Consensus 49 tGEPqr~Vt-~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~ 126 (1416)
T KOG3617|consen 49 TGEPQRDVT-YPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVH 126 (1416)
T ss_pred CCCCCcccc-cceehhhhccChH-HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeE
Confidence 444444333 1233567999998 67788888889999999887776555667999999999999999999999999999
Q ss_pred EEEcc
Q 018858 84 SFDVH 88 (349)
Q Consensus 84 iwd~~ 88 (349)
+|...
T Consensus 127 lwr~d 131 (1416)
T KOG3617|consen 127 LWRYD 131 (1416)
T ss_pred EEEee
Confidence 99876
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=3.8e-06 Score=73.93 Aligned_cols=194 Identities=15% Similarity=0.160 Sum_probs=117.4
Q ss_pred EEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccc-eEEEEEccCCCEEEEEcCCC-----cEEEEEcCCc---
Q 018858 65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEE-INQIVCNPKSSFLACADDGG-----DVKIIDIRQH--- 135 (349)
Q Consensus 65 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--- 135 (349)
+|++++..++.|+.+|.|.+.+-. .+.+..++.+... +..+....+..+|++.+.|+ .+++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 467889999999999999888754 3444556655555 55554444446777766654 4899998732
Q ss_pred ---eEe---ceec---cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 136 ---CLY---KSLR---AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 136 ---~~~---~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
.++ +.+. +....++.+++.+. +-+.+|+|-.+|.|
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~------------------------------------~l~~Iv~Gf~nG~V 149 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE------------------------------------DLKTIVCGFTNGLV 149 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEc------------------------------------cccEEEEEecCcEE
Confidence 222 1111 01133444555554 67889999999999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
..+.-.-.+ .+..+..... ....+|+.+.+. .+++-++-+.
T Consensus 150 ~~~~GDi~R-----------------------------------Drgsr~~~~~-~~~~pITgL~~~---~d~~s~lFv~ 190 (933)
T KOG2114|consen 150 ICYKGDILR-----------------------------------DRGSRQDYSH-RGKEPITGLALR---SDGKSVLFVA 190 (933)
T ss_pred EEEcCcchh-----------------------------------ccccceeeec-cCCCCceeeEEe---cCCceeEEEE
Confidence 887643110 0000111111 235689999998 6777633333
Q ss_pred CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.-..|.+|.+.... +.......|....+|..+++..++ +++++ +..+.+|+
T Consensus 191 Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~ 241 (933)
T KOG2114|consen 191 TTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYD 241 (933)
T ss_pred ecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEc
Confidence 34579999998642 234456677888888888765443 33333 33566665
No 319
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1.3e-05 Score=69.14 Aligned_cols=118 Identities=10% Similarity=0.106 Sum_probs=87.0
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE-EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
..|.=-+++.. .++++.|+.-|.+++|+-..++... ...+..+.+..+..+++..++|.|+..|.|.++-+.......
T Consensus 34 ~~v~lTc~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDAT-EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecC-CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 33433345555 7899999999999999987766432 222344556677889988899999999999999887632222
Q ss_pred ceee---ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 95 PLES---YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 95 ~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
.... -..|...|++++|++++..+++|...|.|..-.+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1111 223567899999999999999999999999888776
No 320
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.65 E-value=9.7e-05 Score=57.76 Aligned_cols=169 Identities=11% Similarity=0.116 Sum_probs=101.8
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC-CCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
+.+.+-.+.+..++|.|+++.++++....+.|...+. +++.+..+... .+..-.+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 4566666779999999986678888888899998996 47887777644 356788999888877776667899999988
Q ss_pred cCCCcc---cc---ee--eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC---ceEecee-----c--cccccce
Q 018858 88 HMPASW---RP---LE--SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---HCLYKSL-----R--AGHSSIC 149 (349)
Q Consensus 88 ~~~~~~---~~---~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~-----~--~~~~~~v 149 (349)
...... .. +. ....+...+..++|.|.++.|+.+-+.....+|.+.. ...+... . ...-..+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 432111 11 11 1112345689999999888787777776777776653 1111110 0 0122346
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.+++++|. .+.+++....+..|..+|...
T Consensus 174 S~l~~~p~-----------------------------------t~~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 174 SGLSYDPR-----------------------------------TGHLLILSDESRLLLELDRQG 202 (248)
T ss_dssp -EEEEETT-----------------------------------TTEEEEEETTTTEEEEE-TT-
T ss_pred cceEEcCC-----------------------------------CCeEEEEECCCCeEEEECCCC
Confidence 66777774 678888888899999999553
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.65 E-value=1.5e-08 Score=85.62 Aligned_cols=203 Identities=18% Similarity=0.214 Sum_probs=128.3
Q ss_pred CCCeEEEEEecCC--CEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcC----CCcEEEE
Q 018858 58 NGPVTSLCFKSGN--EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADD----GGDVKII 130 (349)
Q Consensus 58 ~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----dg~i~i~ 130 (349)
...+.|+++.-+. ..+++|..+|.|-+-.++..... .-...+.+....++++|++ |.+.||+|-. |-.+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3456677665433 45788889999999988754321 2233455668899999998 4567777643 4569999
Q ss_pred EcCCc--eEec--eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 131 DIRQH--CLYK--SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 131 d~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
|+.++ .+.. .+..+......+++|.. +.+++.+|.....+
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlr------------------------------------d~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLR------------------------------------DTKLVLAGMTSRSV 178 (783)
T ss_pred ecccccCCCccccccccccccCcccccccc------------------------------------Ccchhhcccccchh
Confidence 99865 1111 12201122333455543 67888899898999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
.++|++.. +.....-....+..+.++|| .+.|+++-.
T Consensus 179 ~ifdlRqs-----------------------------------------~~~~~svnTk~vqG~tVdp~--~~nY~cs~~ 215 (783)
T KOG1008|consen 179 HIFDLRQS-----------------------------------------LDSVSSVNTKYVQGITVDPF--SPNYFCSNS 215 (783)
T ss_pred hhhhhhhh-----------------------------------------hhhhhhhhhhhcccceecCC--CCCceeccc
Confidence 99999941 11111112335667778853 556887666
Q ss_pred CCCeEEEEec-CCCcceecccccceeeeccc----cccceEEEEeecCCCCcEEEeeCC-CeEEEeeCC
Q 018858 287 NDKLVKVWDC-SRFQGVQTSINNDLLIKNIN----LNKKVNWLCTTPTESENLVVCDTS-KVVKVYSIS 349 (349)
Q Consensus 287 ~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iw~~~ 349 (349)
||.|.+||. .+-+ .++..... ....+..++|+|.....+++...| ++|+.+++.
T Consensus 216 -dg~iAiwD~~rnie--------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIE--------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -cCceeeccchhhhc--------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 999999994 3322 22222222 223588999999766688888754 789988863
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.63 E-value=0.00012 Score=62.69 Aligned_cols=107 Identities=8% Similarity=0.041 Sum_probs=72.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCC----------Ce-EEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNG----------PV-TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
+..++.++.+|.+.-+|.++++.++..+.... .+ ..+.. .+..++.++.+|.+.-+|.++++.....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 45777788889999999999998877653221 00 01111 3567788888999999999988755443
Q ss_pred eeccCcccceEE-EEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 97 ESYNYNKEEINQ-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 97 ~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
..- ..+.+ ... .+..++.++.++.+..+|.++|+.+....
T Consensus 147 ~~~----~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 147 KVA----GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred cCC----CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 321 11111 111 24467778888999999999999888776
No 323
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.62 E-value=1.2e-06 Score=67.86 Aligned_cols=190 Identities=12% Similarity=0.179 Sum_probs=118.8
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce-----Eeceeccccc------------cceeEEEEccCCCCCCCCC
Q 018858 103 KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-----LYKSLRAGHS------------SICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~ 165 (349)
...|+++.|...|.++++|...|.|.+|.-.... ....++ +|. ..|..+.|..+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~-------- 96 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDD-------- 96 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecC--------
Confidence 3578999999999999999999999999754221 122333 332 23455555442
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec--------CCCCCCcc------cee
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS--------KSTTKPLK------GSQ 231 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~------~~~ 231 (349)
.....++..+.|.+|++|.+......... ..+.+.++ ...
T Consensus 97 --------------------------t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lp 150 (460)
T COG5170 97 --------------------------TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLP 150 (460)
T ss_pred --------------------------CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcc
Confidence 13356777789999999999864221111 01111111 111
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeee-cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccce
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
..+..-.++++ .+.+.+ ..|...|+++.+. .|...++++. |-.|.+|++.-..... .
T Consensus 151 rls~hd~iiaa------------~p~rvyaNaH~yhiNSiS~N---sD~et~lSaD-dLrINLWnl~i~D~sF-----n- 208 (460)
T COG5170 151 RLSEHDEIIAA------------KPCRVYANAHPYHINSISFN---SDKETLLSAD-DLRINLWNLEIIDGSF-----N- 208 (460)
T ss_pred cccccceEEEe------------ccceeccccceeEeeeeeec---Cchheeeecc-ceeeeeccccccCCce-----E-
Confidence 23333333331 222233 5688899999999 7877777664 7889999988654322 1
Q ss_pred eeecccc-----ccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 311 LIKNINL-----NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 311 ~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.....| ...|++..|+|.....+.-.++.|.|++-|++
T Consensus 209 IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 209 IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 1122233 34588889999766777778889999998874
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.62 E-value=7.5e-06 Score=69.37 Aligned_cols=115 Identities=12% Similarity=0.124 Sum_probs=79.0
Q ss_pred CeEEEEEec-CCCEEEEE----eCCC----eEEEEEccCCCccccee-eccCcccceEEEEEccCCCEEEEEcCCCcEEE
Q 018858 60 PVTSLCFKS-GNEDIIYV----SSGK----EVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 60 ~v~~~~~~~-~~~~l~~~----~~dg----~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (349)
...++.|+. +...+.+. +.+| .-.+|++..++. +.+. +.-.....+.+.+++|+...++.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 345667765 33444443 2334 235666654332 2221 11123568999999999999999999999999
Q ss_pred EEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEE
Q 018858 130 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 209 (349)
Q Consensus 130 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 209 (349)
||...+..... + ..-..+.++|+| +|.++++|+..|.+.+|
T Consensus 286 yD~~~~~t~~~-k--a~~~P~~iaWHp------------------------------------~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 286 YDTTRGVTLLA-K--AEFIPTLIAWHP------------------------------------DGAIFVVGSEQGELQCF 326 (545)
T ss_pred EEcCCCeeeee-e--ecccceEEEEcC------------------------------------CCcEEEEEcCCceEEEE
Confidence 99876633222 2 344578889999 89999999999999999
Q ss_pred EccCc
Q 018858 210 NIESE 214 (349)
Q Consensus 210 d~~~~ 214 (349)
|+.-.
T Consensus 327 D~ALs 331 (545)
T PF11768_consen 327 DMALS 331 (545)
T ss_pred EeecC
Confidence 99754
No 325
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=4.1e-08 Score=86.21 Aligned_cols=193 Identities=13% Similarity=0.089 Sum_probs=128.5
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC--cEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG--DVK 128 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~ 128 (349)
..++..|+...++++|+-..++|+.|+..|.|+++++.+|.. .....+|..+++-+.=+.+|..+++.+... -..
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc---cccccccccccccccccCCcceeeeeccccCchHH
Confidence 346677889999999999999999999999999999998743 355667889999998888998777665433 367
Q ss_pred EEEcCC-ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 129 IIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 129 i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
+|++.+ +...+++. .-.++.|+. .-..-+.|+......
T Consensus 1171 LW~~~s~~~~~Hsf~-----ed~~vkFsn------------------------------------~~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD-----EDKAVKFSN------------------------------------SLQFRALGTEADDAL 1209 (1516)
T ss_pred HhccccccCcccccc-----ccceeehhh------------------------------------hHHHHHhcccccceE
Confidence 899873 44445554 245677776 333335566666788
Q ss_pred EEEccCceeeeec-CCCC--CCccceeeeeccccEEEEee-eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEE
Q 018858 208 VINIESELNISRS-KSTT--KPLKGSQSTSKVNIRDAEME-ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI 283 (349)
Q Consensus 208 i~d~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~ 283 (349)
+||++++....+. .... ...-....|+|+-..+.-.| -||..+. +.++.+......+ .=.|+ |.|.-++
T Consensus 1210 ~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvLWDvR~~---~aIh~FD~ft~~~-~G~FH---P~g~eVI 1282 (1516)
T KOG1832|consen 1210 LYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVLWDVRIP---EAIHRFDQFTDYG-GGGFH---PSGNEVI 1282 (1516)
T ss_pred EEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCceeeeeccH---HHHhhhhhheecc-ccccc---CCCceEE
Confidence 9999987655442 2211 12225677888888777322 2333322 3333333222222 22356 7888888
Q ss_pred EeeCCCeEEEEecCCC
Q 018858 284 SGGNDKLVKVWDCSRF 299 (349)
Q Consensus 284 s~~~d~~i~vwd~~~~ 299 (349)
.-++ |||+++.
T Consensus 1283 INSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1283 INSE-----IWDMRTF 1293 (1516)
T ss_pred eech-----hhhhHHH
Confidence 7775 8999886
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.61 E-value=1.2e-05 Score=68.10 Aligned_cols=110 Identities=9% Similarity=0.129 Sum_probs=79.5
Q ss_pred eEEEEecCCCceEEEe----CCCCc----EEEEECCCCcE----EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 19 TCCIASRDRPGFVASS----GEDGC----ICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~----~~dg~----i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
.++.|+-.++..+.|. +.+|. -.+|++...+. +.++ .....|.+++++|+.+.++.|+.||+|.+||
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 4567876545666653 33443 34666654443 1222 3677899999999999999999999999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
...+.. ......-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 288 ~~~~~t-----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 288 TTRGVT-----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCCee-----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 875421 1111234578899999999999999999999999863
No 327
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.61 E-value=0.00015 Score=57.67 Aligned_cols=194 Identities=15% Similarity=0.138 Sum_probs=111.7
Q ss_pred EEEEec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEc-cCCCEEEEEcCCCcEEEEEcCCceEece
Q 018858 63 SLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN-PKSSFLACADDGGDVKIIDIRQHCLYKS 140 (349)
Q Consensus 63 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 140 (349)
++.|.+ ++.++++-...+.|..|+..+++. ..... .....+++. +++.+++ +.. +.+.++|..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~----~~~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDL----PGPNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEES----SSEEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEec----CCCceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEE
Confidence 577888 666666666789999999886531 11222 226677777 5655444 444 3466669888765433
Q ss_pred ecc---c-cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC--------CeEEE
Q 018858 141 LRA---G-HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD--------GVVDV 208 (349)
Q Consensus 141 ~~~---~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i 208 (349)
... . .......+++.| +|++.++.... |.|..
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~------------------------------------~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDP------------------------------------DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-T------------------------------------TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred eeccCCCcccCCCceEEEcC------------------------------------CCCEEEEecCCCccccccccceEE
Confidence 331 1 334567788877 67766655433 34555
Q ss_pred EEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEE-EeeC
Q 018858 209 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGN 287 (349)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~-s~~~ 287 (349)
++... +. ..+.......+.|+|+ |+++.|+ +-+.
T Consensus 120 ~~~~~-----------------------------------------~~-~~~~~~~~~pNGi~~s---~dg~~lyv~ds~ 154 (246)
T PF08450_consen 120 IDPDG-----------------------------------------KV-TVVADGLGFPNGIAFS---PDGKTLYVADSF 154 (246)
T ss_dssp EETTS-----------------------------------------EE-EEEEEEESSEEEEEEE---TTSSEEEEEETT
T ss_pred ECCCC-----------------------------------------eE-EEEecCcccccceEEC---Ccchheeecccc
Confidence 55541 11 1111123456899999 8988765 5567
Q ss_pred CCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+.|+.|++........ ....+.......+..-.+++.+ +|++.++.-..+.|.+++-
T Consensus 155 ~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELS--NRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp TTEEEEEEEETTTCCEE--EEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEET
T ss_pred cceeEEEecccccccee--eeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECC
Confidence 78899999875422000 0012222222223577888877 7776666667788888763
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.59 E-value=0.00017 Score=60.88 Aligned_cols=121 Identities=18% Similarity=0.255 Sum_probs=75.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc----------------------------------------ceeec
Q 018858 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR----------------------------------------PLESY 99 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------------------------~~~~~ 99 (349)
.|+.+.|.++..-|+++...|.|.+|.+...+... ++..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47888899888889999999999888765321110 11112
Q ss_pred cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc-------ccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 100 NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-------GHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
....++|++++.+ +=.++|.|.++|.+.|.|+|....+..-.. .....++++.|.-
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v---------------- 145 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV---------------- 145 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE----------------
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE----------------
Confidence 2335678888886 445999999999999999998877654220 1223456666653
Q ss_pred ccCCceeEEeecCcccccCCCC---cEEEEEcCCCeEEEEEcc
Q 018858 173 CYNPAFVHAIAIPDADMLDKTN---KICVVAKGDGVVDVINIE 212 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~ 212 (349)
+.+ ..++ -.|++|+..|.+.+|.+.
T Consensus 146 --------------m~~-~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 146 --------------MTL-GGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp --------------EE--TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred --------------Eec-CCCcccceEEEEEeCCCCEEEEEEe
Confidence 111 1122 578899999999999885
No 329
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.56 E-value=0.00013 Score=58.02 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=68.4
Q ss_pred EEEecCCCceEEEeCC-----CCcEEEEECC-CCcEEEEeecCCCCeEEEEEecCCCEEEEEeC-------CC-------
Q 018858 21 CIASRDRPGFVASSGE-----DGCICWFDLR-SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-------GK------- 80 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~-----dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg------- 80 (349)
-.|+++ |++|++.-. .|.|-|||.. ..+.+.++..|.-....+.+.|+++.|+++.. .|
T Consensus 56 g~fs~d-G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPD-GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCC-CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 468998 888887643 4889999998 56678888888877888999999988877642 12
Q ss_pred ----eEEEEEccCCCcccceeec--cCcccceEEEEEccCCCEEEEE
Q 018858 81 ----EVKSFDVHMPASWRPLESY--NYNKEEINQIVCNPKSSFLACA 121 (349)
Q Consensus 81 ----~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~ 121 (349)
.+...|..+++...... + ..|...+..+++.++|..++..
T Consensus 135 tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred hcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEE
Confidence 34445555554322211 2 2355678889998887655443
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.56 E-value=6.2e-05 Score=69.16 Aligned_cols=228 Identities=13% Similarity=0.135 Sum_probs=129.0
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
...|.++.|..+.+.++.+...|.|.+-|.++.. ...... -...|.+++|+||++.++..+..+++.+-+ .+..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~---vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGN---VDNGISAASWSPDEELLALITGRQTLLFMT-KDFEP 142 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeee---ccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccc
Confidence 3589999999999999999999999999887642 222222 257899999999999999888877776544 33333
Q ss_pred eceecc----ccccceeEEEEccCCC-CCCCCCCCCCCccc----------cCCceeEEeecCcccccCCCCcEEEEE--
Q 018858 138 YKSLRA----GHSSICSSVQFIPWKP-WEGLPENNGNAGQC----------YNPAFVHAIAIPDADMLDKTNKICVVA-- 200 (349)
Q Consensus 138 ~~~~~~----~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 200 (349)
+...+. ...+..-.+.|-.... +-++ .+.....+. .....-.++.|.. +|.++++.
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg------Dg~~fAVs~~ 215 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRG------DGEYFAVSFV 215 (1265)
T ss_pred hhccccccccccccccceecccccceeeecc-hhhhcccccccccccccchhhccCCceEEEcc------CCcEEEEEEE
Confidence 222110 0111222222222100 0000 000000000 0111123355544 78888873
Q ss_pred ---cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecC
Q 018858 201 ---KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE 277 (349)
Q Consensus 201 ---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 277 (349)
.....|++||-+. . +-..-....+.=.+++|- |
T Consensus 216 ~~~~~~RkirV~drEg-~----------------------------------------Lns~se~~~~l~~~LsWk---P 251 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDREG-A----------------------------------------LNSTSEPVEGLQHSLSWK---P 251 (1265)
T ss_pred eccCCceeEEEecccc-h----------------------------------------hhcccCcccccccceeec---C
Confidence 2337899998772 1 111111112223467787 7
Q ss_pred CccEEEEee---CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEE---eeCCCeEEEeeC
Q 018858 278 RGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV---CDTSKVVKVYSI 348 (349)
Q Consensus 278 ~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~---~~~dg~i~iw~~ 348 (349)
.|..+++-. .|+.|.+|.-+....- ...........++..++|+. ++..|++ ......|++|-+
T Consensus 252 sgs~iA~iq~~~sd~~IvffErNGL~hg------~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 252 SGSLIAAIQCKTSDSDIVFFERNGLRHG------EFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred CCCeEeeeeecCCCCcEEEEecCCcccc------ccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEe
Confidence 777777653 4567888886653211 12212222334489999988 7778888 445566999964
No 331
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.49 E-value=0.00035 Score=57.96 Aligned_cols=226 Identities=19% Similarity=0.184 Sum_probs=120.7
Q ss_pred CcEEEEECCCCcEEEEeec-CCCCeEEEEE---ec----CCCEEEEEeC---------C-CeEEEEEccCC----Ccccc
Q 018858 38 GCICWFDLRSKDVQLVTDV-GNGPVTSLCF---KS----GNEDIIYVSS---------G-KEVKSFDVHMP----ASWRP 95 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~---~~----~~~~l~~~~~---------d-g~i~iwd~~~~----~~~~~ 95 (349)
..|++.|..+.+.+..+.- ..+.+.+++. .. ...+|++|+. . |.|.++++... ...+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888877777655543 2344554443 22 2467777653 2 88999999873 12233
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce-EeceeccccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
+.... .+++|++++-- ++. |+++. ++.|.+|++...+ ....-.......+.++..
T Consensus 82 i~~~~-~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~-------------------- 137 (321)
T PF03178_consen 82 IHSTE-VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV-------------------- 137 (321)
T ss_dssp EEEEE-ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--------------------
T ss_pred EEEEe-ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--------------------
Confidence 32222 35778888766 344 54443 3689999998776 333322012223444443
Q ss_pred CCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceee
Q 018858 175 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
.++++++|.....+.++..+.. ....
T Consensus 138 ------------------~~~~I~vgD~~~sv~~~~~~~~------------------------------------~~~l 163 (321)
T PF03178_consen 138 ------------------FKNYILVGDAMKSVSLLRYDEE------------------------------------NNKL 163 (321)
T ss_dssp ------------------ETTEEEEEESSSSEEEEEEETT------------------------------------TE-E
T ss_pred ------------------cccEEEEEEcccCEEEEEEEcc------------------------------------CCEE
Confidence 3568899988888888765531 0011
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccccccee-eeccccccceEEE---EeecC-
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL-IKNINLNKKVNWL---CTTPT- 329 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~---~~~~~- 329 (349)
..+.. ......++++.+- ++++.++.+..+|.+.++...............+. .........|+++ ...|.
T Consensus 164 ~~va~-d~~~~~v~~~~~l---~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~ 239 (321)
T PF03178_consen 164 ILVAR-DYQPRWVTAAEFL---VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS 239 (321)
T ss_dssp EEEEE-ESS-BEEEEEEEE----SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S
T ss_pred EEEEe-cCCCccEEEEEEe---cCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC
Confidence 11111 1124457888877 56679999999999999998742211111100111 1222244567777 44441
Q ss_pred -CCC-----cEEEeeCCCeEEE
Q 018858 330 -ESE-----NLVVCDTSKVVKV 345 (349)
Q Consensus 330 -~~~-----~l~~~~~dg~i~i 345 (349)
+.+ .++-++.+|.|.+
T Consensus 240 ~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 240 GSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SSS-TTEEEEEEEEETTS-EEE
T ss_pred CCCcccccceEEEEecCCEEEE
Confidence 222 3778888988873
No 332
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.49 E-value=0.00013 Score=61.25 Aligned_cols=93 Identities=13% Similarity=0.112 Sum_probs=56.8
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeec-----cCc---------
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY-----NYN--------- 102 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~--------- 102 (349)
.+.+.++|+++++....... ...+....|+|+|+.++... ++.|.+++..++...+....- .+-
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 46799999998775443332 56788899999999998887 678999987665322111100 000
Q ss_pred ccceEEEEEccCCCEEEEEcC-CCcEEEEE
Q 018858 103 KEEINQIVCNPKSSFLACADD-GGDVKIID 131 (349)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d 131 (349)
-+.-..+-|+||+++||.... +..|..+.
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEE
Confidence 012356889999999987653 33444443
No 333
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.42 E-value=0.00064 Score=56.01 Aligned_cols=201 Identities=13% Similarity=0.092 Sum_probs=93.1
Q ss_pred ccCCCCeeeeCCceeeeEE-----EEecCCCceEEEeCCCC--cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE
Q 018858 3 DAEAKPRRLRGHKATATCC-----IASRDRPGFVASSGEDG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~-----~~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 75 (349)
.|+..+.+|..+...-..+ +|.+++.++|+.+..|| .+.+-|+.+++..+...+.........++|+.+.++.
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 3556666676443333223 45677445566665555 5667788888876655543222334567788888877
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCcccceEEEEEc--cCCCEEEEEcC----------------------CCcEEEEE
Q 018858 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN--PKSSFLACADD----------------------GGDVKIID 131 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~----------------------dg~i~i~d 131 (349)
......|.-.|+++.+. +.+...+ +..+-...|. .++..++-.-. ...|.-.|
T Consensus 98 v~~~~~l~~vdL~T~e~-~~vy~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEE-RVVYEVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EETTTEEEEEETTT--E-EEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EECCCeEEEEECCcCcE-EEEEECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 76677899999988653 2333332 3444344553 34444432111 12345556
Q ss_pred cCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC---CCe-EE
Q 018858 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DGV-VD 207 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~-i~ 207 (349)
+++++....+. ....+..+.|+|. +...++-+-+ +.. -|
T Consensus 175 l~tG~~~~v~~--~~~wlgH~~fsP~-----------------------------------dp~li~fCHEGpw~~Vd~R 217 (386)
T PF14583_consen 175 LKTGERKVVFE--DTDWLGHVQFSPT-----------------------------------DPTLIMFCHEGPWDLVDQR 217 (386)
T ss_dssp TTT--EEEEEE--ESS-EEEEEEETT-----------------------------------EEEEEEEEE-S-TTTSS-S
T ss_pred CCCCceeEEEe--cCccccCcccCCC-----------------------------------CCCEEEEeccCCcceeceE
Confidence 66666544443 4455667777773 5555655432 221 25
Q ss_pred EEEccC--ceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 208 VINIES--ELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 208 i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
||-++. ..............+..--|.|||..+...
T Consensus 218 iW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 218 IWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp EEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred EEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence 555543 222222222333445566799999988864
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=6.6e-06 Score=72.54 Aligned_cols=110 Identities=13% Similarity=0.148 Sum_probs=84.8
Q ss_pred EEEEEecCCCEEEEEeC----CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 62 TSLCFKSGNEDIIYVSS----GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 62 ~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
+-..|+|...++++++. .|+|.||- ++|+....+ +++ -.+++++|+|..-.|+.|=.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccc---eehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 34579999999888763 58899884 444322221 122 3467799999988888888899999999876665
Q ss_pred eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 138 YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
..... .|..++..+.|++ +|..++++..-|.+.+|.+.-
T Consensus 94 htv~~-th~a~i~~l~wS~------------------------------------~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 94 HTVVE-THPAPIQGLDWSH------------------------------------DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeecc-CCCCCceeEEecC------------------------------------CCCeEEEcCCCceeEEEEeee
Confidence 44444 7999999999999 899999999999999998873
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.41 E-value=0.00045 Score=59.16 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=82.3
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
+.+....-....+.++|+ +++++.+ .||...|+.....+.... +.-...+|.+.++ +|+-...+.|.|+.--
T Consensus 26 k~lg~~~~~p~~ls~npn-gr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPN-GRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp EEEEE-SS--SEEEE-TT-SSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred ccCCCCCcCCeeEEECCC-CCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 344444455788999998 7887774 478888888544443322 2334577888554 6666668889996322
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
+....+.+.. ...+..+-. |..|...+.+ .|.+||..+++.++++. . . +|..+.|++
T Consensus 98 ~~~~~k~i~~----~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~-v-~-~vk~V~Ws~------------ 154 (443)
T PF04053_consen 98 KNEVVKSIKL----PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID-V-S-AVKYVIWSD------------ 154 (443)
T ss_dssp EE-TT---------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES-S---E-EEEEE-T------------
T ss_pred ccccceEEcC----CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe-c-C-CCcEEEEEC------------
Confidence 2111112211 112333332 7777766554 79999999999999887 2 2 389999999
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
++.+++..+.+ .+.+++.+.
T Consensus 155 ------------------------~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 155 ------------------------DGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ------------------------TSSEEEEE-S--SEEEEEE-H
T ss_pred ------------------------CCCEEEEEeCC-eEEEEEecc
Confidence 78888888765 566766553
No 336
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.37 E-value=0.0008 Score=54.55 Aligned_cols=219 Identities=14% Similarity=0.094 Sum_probs=118.6
Q ss_pred CceEEEeCCCCcEEEEECCC-CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccccee---------
Q 018858 28 PGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE--------- 97 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------- 97 (349)
++.|+.|..+| +.+++... .+..... +...|..+...|+-+.+++-+ |+.+.++++..-.......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 67899998888 99999833 3333322 233499999999888777665 5999999987533222100
Q ss_pred ---eccCcccceEEEE--EccCC-CEEEEEcCCCcEEEEEcCCc-----eEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 98 ---SYNYNKEEINQIV--CNPKS-SFLACADDGGDVKIIDIRQH-----CLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 98 ---~~~~~~~~v~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
.. .....+...+ -...+ ..|+++ ....|.+|..... +..+++. -...+..++|.+
T Consensus 83 ~~~~~-~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~---------- 148 (275)
T PF00780_consen 83 LPTKL-PETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLG---------- 148 (275)
T ss_pred ccccc-cccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeC----------
Confidence 11 1123344444 11233 344444 4458888887643 3445555 456788888865
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCC----------Cccceeeeecc
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----------PLKGSQSTSKV 236 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 236 (349)
+.+++|..++ ..+.|+.++........... .....+.--++
T Consensus 149 ----------------------------~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (275)
T PF00780_consen 149 ----------------------------NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD 199 (275)
T ss_pred ----------------------------CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC
Confidence 5677776544 77888886544332211111 11112222233
Q ss_pred ccEEEEeeeeeecCceeeeee--eeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 237 NIRDAEMEILDQSGGKRLHLD--YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+.++++...........+... ..+.- ...+..+.+. ..||+..+. +.|.||++.+++
T Consensus 200 ~e~Ll~~~~~g~fv~~~G~~~r~~~i~W-~~~p~~~~~~-----~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 200 NEFLLCYDNIGVFVNKNGEPSRKSTIQW-SSAPQSVAYS-----SPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred ceEEEEecceEEEEcCCCCcCcccEEEc-CCchhEEEEE-----CCEEEEECC-CEEEEEECcCCc
Confidence 455553211111111111111 11111 1244566654 347777665 559999999983
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.27 E-value=2.9e-05 Score=67.09 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=87.7
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
...|.--+++..+++++.|+..|.+++|+-..+...+. + ..+-...+.....+++..++|.|+..|.|.++-+....+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~-~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-K-NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-c-ccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 34455556677899999999999999999876542221 1 111234566677888889999999999999998875322
Q ss_pred -----eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 138 -----YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 138 -----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
+......|...|++++|++ ++..+.+|...|+|..-.+.
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~------------------------------------~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSK------------------------------------NGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred CcceeeccccccCCceEEEEEecc------------------------------------cccEEeecCCCceEEEEEec
Confidence 1222224678899999999 89999999999999988887
Q ss_pred C
Q 018858 213 S 213 (349)
Q Consensus 213 ~ 213 (349)
+
T Consensus 155 s 155 (726)
T KOG3621|consen 155 S 155 (726)
T ss_pred h
Confidence 5
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.26 E-value=0.0012 Score=51.83 Aligned_cols=215 Identities=10% Similarity=0.061 Sum_probs=111.2
Q ss_pred EeecCCCCeEEEEEecCCCEEE-EEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEE
Q 018858 53 VTDVGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID 131 (349)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 131 (349)
.+.+-...+..++|.|+.+.|+ +....+.|..++.+ ++..+.+. +.+ .+....+++..++.++++.-.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-LDG-FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-CCC-CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 4445556699999999866554 55566788877864 44333332 222 25678888888887777776789999998
Q ss_pred cCCce------Eeceec----cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc
Q 018858 132 IRQHC------LYKSLR----AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 201 (349)
Q Consensus 132 ~~~~~------~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (349)
+.... ....+. ..++..+..++|+| .++.|+++-
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~------------------------------------~~~~L~v~k 136 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP------------------------------------KTNRLFVAK 136 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEET------------------------------------TTTEEEEEE
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcC------------------------------------CCCEEEEEe
Confidence 84211 111221 02345578888888 556666666
Q ss_pred CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccE
Q 018858 202 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 281 (349)
Q Consensus 202 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~ 281 (349)
...-..+|.++... .+..+. ................+.++.++| ..+.+
T Consensus 137 E~~P~~l~~~~~~~--------------------~~~~~~---------~~~~~~~~~~~~~~~d~S~l~~~p--~t~~l 185 (248)
T PF06977_consen 137 ERKPKRLYEVNGFP--------------------GGFDLF---------VSDDQDLDDDKLFVRDLSGLSYDP--RTGHL 185 (248)
T ss_dssp ESSSEEEEEEESTT---------------------SS--E---------EEE-HHHH-HT--SS---EEEEET--TTTEE
T ss_pred CCCChhhEEEcccc--------------------Ccccee---------eccccccccccceeccccceEEcC--CCCeE
Confidence 66666677666410 000000 000000000112334578999996 56778
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeccccc------cceEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 282 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN------KKVNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 282 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
++-+.+...|..+|.... .. ..+....+.. ...-.|++.+ +| .|+..+.-+..++|
T Consensus 186 liLS~es~~l~~~d~~G~-~~------~~~~L~~g~~gl~~~~~QpEGIa~d~-~G-~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 186 LILSDESRLLLELDRQGR-VV------SSLSLDRGFHGLSKDIPQPEGIAFDP-DG-NLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEE-TT---EE------EEEE-STTGGG-SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred EEEECCCCeEEEECCCCC-EE------EEEEeCCcccCcccccCCccEEEECC-CC-CEEEEcCCceEEEe
Confidence 888888899999995442 11 1111222211 2467889987 77 57777777777665
No 339
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.24 E-value=0.0024 Score=54.71 Aligned_cols=48 Identities=13% Similarity=0.285 Sum_probs=37.7
Q ss_pred cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
.|.+|+.. |+++..+.-..+.+.++.|+.+. .|+....||.++++|+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 48888865 66676666555899999998754 56677789999999986
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=8.9e-06 Score=69.29 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=77.3
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVT-SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
-.|.-+.|+|. ..++|++..+|.+.+..+. .+.+++++.|+.+++ +++|.|+|+.||+|-.||+|++.|++++....
T Consensus 21 ~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 45777899998 8999999999999999988 777899998888888 99999999999999999999999999875443
Q ss_pred ceeeccCcccceEEEEEcc
Q 018858 95 PLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~ 113 (349)
.. .......|.++.|.+
T Consensus 99 ~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SF--LFSVETDISKGIWDR 115 (665)
T ss_pred cc--ccccccchheeeccc
Confidence 32 111245677777764
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.22 E-value=0.00084 Score=58.84 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=51.0
Q ss_pred cceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecc--cccceeeeccccccceEEEEeecCCCCcEEEeeCCC
Q 018858 265 AAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTS--INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK 341 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 341 (349)
.....+.++ |||+++++++ .+.+|.|.|+.+.+..... .....+.....-.......+|.+ +|+...+.--|.
T Consensus 321 KsPHGV~vS---PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~ds 396 (635)
T PRK02888 321 KNPHGVNTS---PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDS 396 (635)
T ss_pred CCccceEEC---CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeecc
Confidence 346788999 8999887765 5899999999986532110 00011111111233344557766 676666678999
Q ss_pred eEEEeeC
Q 018858 342 VVKVYSI 348 (349)
Q Consensus 342 ~i~iw~~ 348 (349)
.|..|++
T Consensus 397 qv~kwn~ 403 (635)
T PRK02888 397 QIVKWNI 403 (635)
T ss_pred eeEEEeh
Confidence 9999996
No 342
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.3e-05 Score=63.15 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=75.1
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+++.+-.+. +....+..+...|..++|+|..+ ++..++.+..|+|.|+++..++..+. .+ ..+++++|.-+
T Consensus 175 v~~l~~~~f---kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDld--- 246 (463)
T KOG1645|consen 175 VQKLESHDF---KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLD--- 246 (463)
T ss_pred eEEeccCCc---chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccC---
Confidence 555544432 33445566778899999999876 78889999999999999999888887 44 78999999885
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
+.+++..|...|.|.+||++..+
T Consensus 247 --------------------------------e~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 247 --------------------------------ERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred --------------------------------CcceeEEeccCceEEEEEccCCC
Confidence 56788888899999999999743
No 343
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.21 E-value=0.0024 Score=54.00 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=73.0
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-------------------------------------------EEE
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-------------------------------------------QLV 53 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-------------------------------------------~~~ 53 (349)
.|+.+.|.++ ..-|+.|...|.+.||.....+. ...
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5889999998 67788888899999986532110 011
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC------cccceEEEEEcc-----CC---CEEE
Q 018858 54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY------NKEEINQIVCNP-----KS---SFLA 119 (349)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l~ 119 (349)
++...++|++++.| +=-++|.|..+|.+.|.|++.+..+.. ..+.. ....++++.|.. |+ -.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22245789999987 455899999999999999986532222 11211 234577787752 22 4678
Q ss_pred EEcCCCcEEEEEcC
Q 018858 120 CADDGGDVKIIDIR 133 (349)
Q Consensus 120 ~~~~dg~i~i~d~~ 133 (349)
+|+..|.+.+|.+.
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 99999999999875
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.16 E-value=0.0009 Score=60.80 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=83.1
Q ss_pred ceEEEe-CCCCcEEEEECCCCcEEEEeecCCCC-eEEEEEec-----CCCEEEEEeCCCeEEEEEccCCCcccce----e
Q 018858 29 GFVASS-GEDGCICWFDLRSKDVQLVTDVGNGP-VTSLCFKS-----GNEDIIYVSSGKEVKSFDVHMPASWRPL----E 97 (349)
Q Consensus 29 ~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~ 97 (349)
++|+.. .....|+-.|++.|+.+..+..+... |..++-.. .....+.|-.+..+..||.+.... +.+ .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k 572 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSK 572 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeecccc
Confidence 344433 34577899999999999999887644 55543221 133456777788899999986431 111 1
Q ss_pred eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+ ......+|++-+.+| +||+|+.+|.||+||--..+....++ +...+|.++..+.
T Consensus 573 ~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp-~lG~pI~~iDvt~ 628 (794)
T PF08553_consen 573 QY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALP-GLGDPIIGIDVTA 628 (794)
T ss_pred cc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCC-CCCCCeeEEEecC
Confidence 12 123457777777665 79999999999999943333333455 6788999999998
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.14 E-value=0.00079 Score=59.00 Aligned_cols=137 Identities=12% Similarity=0.032 Sum_probs=85.7
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC--------------------------------------
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-------------------------------------- 78 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------------------------------- 78 (349)
.+.+.+.|.++.+....+.... ....++++|+|+++++.+.
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred eEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 4566777877777666655432 3456677788887776651
Q ss_pred --CCeEEEEEccCC--CcccceeeccCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceE------------ecee
Q 018858 79 --GKEVKSFDVHMP--ASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCL------------YKSL 141 (349)
Q Consensus 79 --dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------------~~~~ 141 (349)
++.|.+.|..+. .....+..+.. ......+.++|||+++++++ .+.+|.++|+.+.+. ..+.
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 234666666540 00112222221 24567899999999887655 588999999986542 2222
Q ss_pred ccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 142 RAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
. -.......+|.+ +|+.+.+-..|..|..|++..
T Consensus 372 e--vGlGPLHTaFDg------------------------------------~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 E--LGLGPLHTAFDG------------------------------------RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c--cCCCcceEEECC------------------------------------CCCEEEeEeecceeEEEehHH
Confidence 2 122233445555 778788888999999999986
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.0003 Score=60.01 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=67.4
Q ss_pred cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe---CC-CeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS---SG-KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
.+.+=|.+ +.....+......+..-+|+|+++.++... .. ..+.++++.+++....+. +. ..-...+|+||
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~---g~~~~P~fspD 248 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FN---GNNGAPAFSPD 248 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cC---CccCCccCCCC
Confidence 34444443 444445554556777788999998876653 22 469999999876544443 33 33445689999
Q ss_pred CCEEEE-EcCCCc--EEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 115 SSFLAC-ADDGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 115 ~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
|+.|+. ...||. |+++|+..+.. ..+. ...+.-..-.|+|
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt-~~~gi~~~Ps~sp 291 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNL-PRLT-NGFGINTSPSWSP 291 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcc-eecc-cCCccccCccCCC
Confidence 987764 455665 77778876663 3344 2222233555666
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00021 Score=60.84 Aligned_cols=144 Identities=16% Similarity=0.134 Sum_probs=83.8
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEe---CCC-CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASS---GED-GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SG 79 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~---~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 79 (349)
+...+.+..-...+..-.|+|+ +..++-. ... ..+.++++.+++....+. ..+.-...+|+|+|+.|+.+. .|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~-~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPD-GKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcC-CCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCC
Confidence 3445555555566777789998 5544422 222 469999999877644433 223334568999999987765 45
Q ss_pred C--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCc--EEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGD--VKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
| .|.+.|+..+...+ +.... +.-..-.|+|+|+.++..+. .|. |.++|++.... ..+. .....-..-.|
T Consensus 260 g~~~iy~~dl~~~~~~~-Lt~~~---gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT-~~~~~~~~p~~ 333 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR-LTNGF---GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT-FSGGGNSNPVW 333 (425)
T ss_pred CCccEEEEcCCCCccee-cccCC---ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEee-ccCCCCcCccC
Confidence 5 46666777654222 33322 22336689999998876554 444 66667665544 3332 12222225566
Q ss_pred cc
Q 018858 155 IP 156 (349)
Q Consensus 155 ~~ 156 (349)
+|
T Consensus 334 Sp 335 (425)
T COG0823 334 SP 335 (425)
T ss_pred CC
Confidence 66
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.13 E-value=0.0051 Score=54.23 Aligned_cols=112 Identities=12% Similarity=0.071 Sum_probs=69.8
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCC-----eE-EEEEecCCCEEEEEe---------CCCeEEEEEccCCCcc
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGP-----VT-SLCFKSGNEDIIYVS---------SGKEVKSFDVHMPASW 93 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~ 93 (349)
..++.++.+|.|+-+|.++++.+..+...... +. ...+. +..++.++ .++.+.-+|..+++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57778888999999999999998877643321 11 11222 24455554 3578888898887654
Q ss_pred cceeeccCcc-----------------cce-EEEEEccCCCEEEEEcCCC------------------cEEEEEcCCceE
Q 018858 94 RPLESYNYNK-----------------EEI-NQIVCNPKSSFLACADDGG------------------DVKIIDIRQHCL 137 (349)
Q Consensus 94 ~~~~~~~~~~-----------------~~v-~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~ 137 (349)
.......... ..+ ...++.+.+..++.++.++ .|.-+|.++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 4333211000 001 1234455566777777665 688899999988
Q ss_pred eceec
Q 018858 138 YKSLR 142 (349)
Q Consensus 138 ~~~~~ 142 (349)
+..++
T Consensus 269 ~W~~~ 273 (488)
T cd00216 269 KWFYQ 273 (488)
T ss_pred EEEee
Confidence 87765
No 349
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.8e-05 Score=67.54 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=75.3
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE-EEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN-QIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
..+.-+.|+|.-+.||.+..+|.|.+..+. .+.+-.++-+...++ +++|.|||+.+|+|-.||+|++.|++++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 457789999999999999999999888876 233444443455566 999999999999999999999999998887
Q ss_pred eceeccccccceeEEEEcc
Q 018858 138 YKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~ 156 (349)
+..+.......|.++-|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7763323566788888875
No 350
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=98.05 E-value=0.0051 Score=51.45 Aligned_cols=126 Identities=10% Similarity=0.120 Sum_probs=62.0
Q ss_pred CceEEEeC-CCCcEEEEECCC----CcEEEEeec---CC----CCeEEEEEecCCCEEEEEeC--C----CeEEEEEccC
Q 018858 28 PGFVASSG-EDGCICWFDLRS----KDVQLVTDV---GN----GPVTSLCFKSGNEDIIYVSS--G----KEVKSFDVHM 89 (349)
Q Consensus 28 ~~~l~t~~-~dg~i~vwd~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~~--d----g~i~iwd~~~ 89 (349)
.++|+..+ ..+.|+|.|+.+ .++.+.++. +. .....+.--|+|+.++++-. + |.+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 56666666 668999999873 334455542 11 22233444578888877532 2 4677777664
Q ss_pred CCcccceeeccC---cccceEEEEEccCCCEEEEEcC--------------------CCcEEEEEcCCceEeceeccccc
Q 018858 90 PASWRPLESYNY---NKEEINQIVCNPKSSFLACADD--------------------GGDVKIIDIRQHCLYKSLRAGHS 146 (349)
Q Consensus 90 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~ 146 (349)
-+ ....... ....-..+-|.|..+.+++... ...+.+||+.+.+.++++..+..
T Consensus 167 f~---v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 167 FE---VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp -----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cc---ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 32 2222221 1223456777887777777533 34799999999999999884433
Q ss_pred c-ceeEEEEcc
Q 018858 147 S-ICSSVQFIP 156 (349)
Q Consensus 147 ~-~v~~~~~~~ 156 (349)
+ ....+.|..
T Consensus 244 g~~pLEvRflH 254 (461)
T PF05694_consen 244 GQMPLEVRFLH 254 (461)
T ss_dssp EEEEEEEEE-S
T ss_pred CCceEEEEecC
Confidence 3 355677765
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.04 E-value=0.0013 Score=55.44 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=114.9
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC-----------------CCCeEEEEEecCCCEEEEEe
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-----------------NGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~ 77 (349)
...+....|+|+ ++.++-.. ++.|.+++..+++..+..... -..-..+.|||++++||...
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 456788899999 77777665 468999998777544322111 11235688999999998754
Q ss_pred CC-C-----------------------------------eEEEEEccCCCcccce-e-eccCcccceEEEEEccCCCEEE
Q 018858 78 SG-K-----------------------------------EVKSFDVHMPASWRPL-E-SYNYNKEEINQIVCNPKSSFLA 119 (349)
Q Consensus 78 ~d-g-----------------------------------~i~iwd~~~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~l~ 119 (349)
.| . .+.|+|+.+++....- . ........+..+.|.++++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 32 1 2344555544321100 0 1112245677888888887333
Q ss_pred E--EcCCC---cEEEEEcCCceEeceeccccccce---eEEEEc-cCCCCCCCCCCCCCCccccCCceeEEeecCccccc
Q 018858 120 C--ADDGG---DVKIIDIRQHCLYKSLRAGHSSIC---SSVQFI-PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADML 190 (349)
Q Consensus 120 ~--~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
. ..++. .+.++|..+++............+ ....|. ++
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~--------------------------------- 246 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD--------------------------------- 246 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT---------------------------------
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC---------------------------------
Confidence 2 22222 255666665543222221111111 123332 21
Q ss_pred CCCCcEEEEEcCCCe--EEEEEccCceeeeecCCCCCCcc-ceeeeeccccEEEEeeeeeecCce-------e-eeeeee
Q 018858 191 DKTNKICVVAKGDGV--VDVINIESELNISRSKSTTKPLK-GSQSTSKVNIRDAEMEILDQSGGK-------R-LHLDYS 259 (349)
Q Consensus 191 ~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~ 259 (349)
.+.++.....+|. |.+++...+...... .....+ ..+.++++++.+...+..+..... . ......
T Consensus 247 --~~~~l~~s~~~G~~hly~~~~~~~~~~~lT--~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~ 322 (353)
T PF00930_consen 247 --GNEFLWISERDGYRHLYLYDLDGGKPRQLT--SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC 322 (353)
T ss_dssp --SSEEEEEEETTSSEEEEEEETTSSEEEESS---SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE
T ss_pred --CCEEEEEEEcCCCcEEEEEcccccceeccc--cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe
Confidence 4455555557774 455555554433222 222334 457888888888765544221111 0 112223
Q ss_pred ecCCCcceEEEEEeeecCCccEEEEe
Q 018858 260 VGGHTAAASCVAFSMFGERGKYLISG 285 (349)
Q Consensus 260 ~~~h~~~i~~i~~~~~~~~~~~l~s~ 285 (349)
+....+.-..+.|+ |++++++-.
T Consensus 323 LT~~~~~~~~~~~S---pdg~y~v~~ 345 (353)
T PF00930_consen 323 LTCEDGDHYSASFS---PDGKYYVDT 345 (353)
T ss_dssp SSTTSSTTEEEEE----TTSSEEEEE
T ss_pred ccCCCCCceEEEEC---CCCCEEEEE
Confidence 33222222588888 888887644
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.04 E-value=0.0021 Score=55.14 Aligned_cols=146 Identities=12% Similarity=0.086 Sum_probs=75.6
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 55 DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
......+..+.++|+|+++++++ +|.-.|+..... +... .+.....+|.+.++ +|+-.....|.++.--+
T Consensus 29 g~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~---r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAW---RNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTT---EEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred CCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCC---cccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence 33445578899999999998855 788888873321 1111 24456788988554 66666678899973222
Q ss_pred ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 135 HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
.+....++ ....+..+- .|.+|...+. +.|.+||..++
T Consensus 99 ~~~~k~i~--~~~~~~~If---------------------------------------~G~LL~~~~~-~~i~~yDw~~~ 136 (443)
T PF04053_consen 99 NEVVKSIK--LPFSVEKIF---------------------------------------GGNLLGVKSS-DFICFYDWETG 136 (443)
T ss_dssp E-TT-------SS-EEEEE----------------------------------------SSSEEEEET-TEEEEE-TTT-
T ss_pred cccceEEc--CCcccceEE---------------------------------------cCcEEEEECC-CCEEEEEhhHc
Confidence 22222333 111222221 2455666554 48999999975
Q ss_pred eeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEE
Q 018858 215 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vw 294 (349)
..+..+.- .+|..+.|+ +++.+++-.+.+ .++|+
T Consensus 137 ----------------------------------------~~i~~i~v--~~vk~V~Ws---~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 137 ----------------------------------------KLIRRIDV--SAVKYVIWS---DDGELVALVTKD-SIYIL 170 (443)
T ss_dssp -----------------------------------------EEEEESS---E-EEEEE----TTSSEEEEE-S--SEEEE
T ss_pred ----------------------------------------ceeeEEec--CCCcEEEEE---CCCCEEEEEeCC-eEEEE
Confidence 34444432 237888888 788888877754 56676
Q ss_pred ecCC
Q 018858 295 DCSR 298 (349)
Q Consensus 295 d~~~ 298 (349)
+.+.
T Consensus 171 ~~~~ 174 (443)
T PF04053_consen 171 KYNL 174 (443)
T ss_dssp EE-H
T ss_pred Eecc
Confidence 6543
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.99 E-value=1.2e-05 Score=42.78 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=34.6
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFD 44 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd 44 (349)
.+....+..|...|.++.|.+. +.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 3556788899999999999998 68999999999999996
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.96 E-value=0.0041 Score=53.30 Aligned_cols=193 Identities=11% Similarity=0.075 Sum_probs=98.2
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEe-------ecCCCCeEEEEEecCCCEEEE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-------DVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~ 75 (349)
..|+++.++.--.+.|.++.|+.+ ..|+.-..||.++++|+.. +....+ ......+....+..+| ++.
T Consensus 68 ~sG~ll~~i~w~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivv 142 (410)
T PF04841_consen 68 SSGKLLSSIPWDSGRIVGMGWTDD--EELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVV 142 (410)
T ss_pred CCCCEeEEEEECCCCEEEEEECCC--CeEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCCC--EEE
Confidence 355666666544478999999875 4566667899999999863 321111 1111222222333344 333
Q ss_pred EeCCCeEEEEE-ccCCCcccceeeccCccc------ceEE-EEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccccc
Q 018858 76 VSSGKEVKSFD-VHMPASWRPLESYNYNKE------EINQ-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS 147 (349)
Q Consensus 76 ~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~------~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 147 (349)
-..++.+.+.+ .......+.+...+.... .... ..+..+....+....++.+.+.+-...+. +. ..+
T Consensus 143 Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~--~~~ 217 (410)
T PF04841_consen 143 LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID--SDG 217 (410)
T ss_pred ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc--CCC
Confidence 33444444432 221101111111110000 0000 22333344444444445555444222111 22 345
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
++..|+++| +++++|.-..+|.+.+.+..-.+............
T Consensus 218 ~i~~iavSp------------------------------------ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 218 PIIKIAVSP------------------------------------NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred CeEEEEECC------------------------------------CCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 788888888 78999888888998888765444444444444455
Q ss_pred cceeeeeccccEEE
Q 018858 228 KGSQSTSKVNIRDA 241 (349)
Q Consensus 228 ~~~~~~~~~~~~~~ 241 (349)
...+.|.-+...++
T Consensus 262 p~~~~WCG~dav~l 275 (410)
T PF04841_consen 262 PKQMAWCGNDAVVL 275 (410)
T ss_pred CcEEEEECCCcEEE
Confidence 66777877655444
No 355
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.96 E-value=0.0018 Score=43.05 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=67.8
Q ss_pred eeEEEEec---CCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 18 ATCCIASR---DRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 18 i~~~~~~~---~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
|+++++.. ++.+.|+.|+.|..|++|+-+ +.+..+.. ...|+++.-... ..++.+..+|+|-+|+-.. ...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence 56666654 444789999999999999843 56666664 356777766554 6799999999999997542 122
Q ss_pred ceeeccCcccceEEEEEcc---CC-CEEEEEcCCCcEE
Q 018858 95 PLESYNYNKEEINQIVCNP---KS-SFLACADDGGDVK 128 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~ 128 (349)
.++. +..+.++++.. +| ..|++|-.+|.|-
T Consensus 76 RiKS----K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS----KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc----CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 24466666543 33 4688888888764
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=0.0085 Score=48.86 Aligned_cols=229 Identities=14% Similarity=0.076 Sum_probs=124.4
Q ss_pred EEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeecc-
Q 018858 22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN- 100 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 100 (349)
.|.++.+.++++--..+.|.-|+..+++. ..+. +...+.++.....+..|+++.. | +.+++.+++.....+....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH-G-VRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc-c-cEEEeccCCceeEEeccccC
Confidence 56676444566666678888888876653 2333 2233444444444445555442 2 5666665443322222211
Q ss_pred C-cccceEEEEEccCCCEEEEEcC-----------CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 101 Y-NKEEINQIVCNPKSSFLACADD-----------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 101 ~-~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
+ .....+.+...|+|.+.++... -|.|+.+|. .+...+.+. .+-..-+.++|+|
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~Sp------------ 172 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSP------------ 172 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECC------------
Confidence 1 1134567788888876665433 122433343 344444444 3344456677777
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
+++.|..+. ..+.|.-|++....
T Consensus 173 ------------------------Dg~tly~aDT~~~~i~r~~~d~~~-------------------------------- 196 (307)
T COG3386 173 ------------------------DGKTLYVADTPANRIHRYDLDPAT-------------------------------- 196 (307)
T ss_pred ------------------------CCCEEEEEeCCCCeEEEEecCccc--------------------------------
Confidence 776666654 45788888776200
Q ss_pred ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC-eEEEEecCCCcceecccccceeeeccccccceEEEEe
Q 018858 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK-LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 326 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (349)
+..... ..........+..-.++.. .+|.+.+++-.+| .|.+|+.. + +++....-....+++++|
T Consensus 197 g~~~~~-~~~~~~~~~~G~PDG~~vD---adG~lw~~a~~~g~~v~~~~pd-G---------~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 197 GPIGGR-RGFVDFDEEPGLPDGMAVD---ADGNLWVAAVWGGGRVVRFNPD-G---------KLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CccCCc-ceEEEccCCCCCCCceEEe---CCCCEEEecccCCceEEEECCC-C---------cEEEEEECCCCCCccceE
Confidence 000000 1111222234556677777 7888776555554 89999998 5 455555555467788888
Q ss_pred ecCCCCcEEEee
Q 018858 327 TPTESENLVVCD 338 (349)
Q Consensus 327 ~~~~~~~l~~~~ 338 (349)
--++.+.|++.+
T Consensus 263 gG~~~~~L~iTs 274 (307)
T COG3386 263 GGPDLNTLYITS 274 (307)
T ss_pred eCCCcCEEEEEe
Confidence 655555555554
No 357
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.89 E-value=0.00075 Score=61.28 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=87.5
Q ss_pred cCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc
Q 018858 122 DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 201 (349)
Q Consensus 122 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (349)
.....|+-.|++.|+++..++ .+... .-..+.|+..+.. + ++...++|-
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~-~~~~~-~v~~~~p~~K~aq---------------------l--------t~e~tflGl 549 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWK-VHDDI-PVVDIAPDSKFAQ---------------------L--------TNEQTFLGL 549 (794)
T ss_pred CCCCceEEEecCCCcEEEEee-cCCCc-ceeEecccccccc---------------------c--------CCCceEEEE
Confidence 345779999999999999998 44432 2334444311110 0 223455677
Q ss_pred CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccE
Q 018858 202 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 281 (349)
Q Consensus 202 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~ 281 (349)
.+..+..||.|-.. ..++ ....+.+ ......+|++-+ .+ .+
T Consensus 550 s~n~lfriDpR~~~----------------------~k~v------------~~~~k~Y-~~~~~Fs~~aTt---~~-G~ 590 (794)
T PF08553_consen 550 SDNSLFRIDPRLSG----------------------NKLV------------DSQSKQY-SSKNNFSCFATT---ED-GY 590 (794)
T ss_pred CCCceEEeccCCCC----------------------Ccee------------ecccccc-ccCCCceEEEec---CC-ce
Confidence 78889999998521 0000 0011112 233457788776 44 58
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 282 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 282 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
||.|+.+|.||+||--.. +-...+.+...+|..|+.+. ||++|++.+..
T Consensus 591 iavgs~~G~IRLyd~~g~---------~AKT~lp~lG~pI~~iDvt~-DGkwilaTc~t 639 (794)
T PF08553_consen 591 IAVGSNKGDIRLYDRLGK---------RAKTALPGLGDPIIGIDVTA-DGKWILATCKT 639 (794)
T ss_pred EEEEeCCCcEEeecccch---------hhhhcCCCCCCCeeEEEecC-CCcEEEEeecc
Confidence 999999999999994332 33335557789999999977 99887776654
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.87 E-value=6.6e-05 Score=39.64 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=33.6
Q ss_pred cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
+....+..|...|.++.|.+.+..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778889999999999999999999999999995
No 359
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.84 E-value=0.0031 Score=41.98 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=56.1
Q ss_pred eEEEEEec---CC-CEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 61 VTSLCFKS---GN-EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 61 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
|+++++.. +| +.|++|+.|..|++|+-+. .+..+.. .+.|+.++-... ..|+.+..+|+|-+|+- .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cc
Confidence 56666654 22 5699999999999998652 2222221 366777776655 67899999999999985 33
Q ss_pred EeceeccccccceeEEEEcc
Q 018858 137 LYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+...+ ....+.++.+..
T Consensus 73 RlWRiK--SK~~~~~~~~~D 90 (111)
T PF14783_consen 73 RLWRIK--SKNQVTSMAFYD 90 (111)
T ss_pred eeeeec--cCCCeEEEEEEc
Confidence 344444 334466666544
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.016 Score=49.28 Aligned_cols=132 Identities=13% Similarity=0.173 Sum_probs=87.9
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC---CCeEEEEEccCCCcccc
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRP 95 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~ 95 (349)
..++.++.+.+..++...+..|.+.|..+.+......... ....++++|+++.+.++.. ++.+.+.|-.+++....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 3567777744466666667899999988777766665433 5678999999988877765 67888888876543333
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceEec-e---eccccccceeEEEEcc
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYK-S---LRAGHSSICSSVQFIP 156 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~---~~~~~~~~v~~~~~~~ 156 (349)
......+ ..+++.|++..++... .++.|.+.|.......+ . .. ........+.+.|
T Consensus 156 ---~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~ 216 (381)
T COG3391 156 ---IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDP 216 (381)
T ss_pred ---EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccc-ccCCCCceEEECC
Confidence 2211223 8899999998665554 78899999977665553 1 01 1223345566777
No 361
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.76 E-value=0.0097 Score=53.25 Aligned_cols=103 Identities=14% Similarity=0.207 Sum_probs=59.0
Q ss_pred CceEEEeCCCC------cEEEEECCCCcEEE--EeecCCCCeEEEEEecCCCEEEEEeCC-C-----eEEEEEccCCCcc
Q 018858 28 PGFVASSGEDG------CICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSG-K-----EVKSFDVHMPASW 93 (349)
Q Consensus 28 ~~~l~t~~~dg------~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~iwd~~~~~~~ 93 (349)
+.+++.||.++ .+..+|..+++... .+. ....-.+++.. ++...++|+.+ | .+..||..+++ .
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W 361 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-W 361 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-e
Confidence 56777787763 57788887765432 222 22233344444 45777888888 3 67888887654 3
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEEcCCCc-----EEEEEcCCc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGD-----VKIIDIRQH 135 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~ 135 (349)
..+..+...........+ +|...|+|+.||. +-.||.++.
T Consensus 362 ~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred eccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCC
Confidence 333333222222222222 5778889988864 666776543
No 362
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.75 E-value=0.026 Score=49.88 Aligned_cols=111 Identities=8% Similarity=0.056 Sum_probs=68.0
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCC------CeE--EEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeecc
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNG------PVT--SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN 100 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 100 (349)
..++.++.++.++-.|..+++.+..++.... .+. .+... ++..++.++.++.|.-+|.++++.......-.
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 4566777789999999999998877654322 110 01111 22678888889999999999886543332211
Q ss_pred C--cccce-EEEEEccCCCEEEEEc---------CCCcEEEEEcCCceEeceec
Q 018858 101 Y--NKEEI-NQIVCNPKSSFLACAD---------DGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 101 ~--~~~~v-~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~ 142 (349)
. ....+ ....+. +..++.++ .++.+..+|..+++.+..++
T Consensus 141 ~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 141 QVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 0 00001 111121 23454543 36789999999999888776
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.73 E-value=0.019 Score=47.76 Aligned_cols=143 Identities=15% Similarity=0.266 Sum_probs=87.4
Q ss_pred CceEEEeCC----------CCcEEEEECCCC-----cE--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 28 PGFVASSGE----------DGCICWFDLRSK-----DV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 28 ~~~l~t~~~----------dg~i~vwd~~~~-----~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
..+++.|.. .|.|.++++... +. +... ...++|++++-. +.+|+++. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh--CCEEEEee-cCEEEEEEccCc
Confidence 467776642 289999999874 22 2222 246889998766 33455554 578999999876
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEecee-ccccccceeEEEEccCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSL-RAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
+.......+.. ...+.++... ++++++|...+.+.++..+. ...+..+ +......++++.|.+
T Consensus 118 ~~l~~~~~~~~-~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~------------ 182 (321)
T PF03178_consen 118 KTLLKKAFYDS-PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV------------ 182 (321)
T ss_dssp SSEEEEEEE-B-SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-------------
T ss_pred ccchhhheecc-eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec------------
Confidence 52233333322 1245555544 66999999888888885542 2222222 212344577777775
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
+++.++++..+|.+.++....
T Consensus 183 ------------------------d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 183 ------------------------DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ------------------------SSSEEEEEETTSEEEEEEE-S
T ss_pred ------------------------CCcEEEEEcCCCeEEEEEECC
Confidence 346899999999999998863
No 364
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.73 E-value=0.017 Score=47.05 Aligned_cols=103 Identities=13% Similarity=0.158 Sum_probs=67.0
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe----------CCCeEEEEEccCCCcccceeeccCcc----
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSFDVHMPASWRPLESYNYNK---- 103 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~---- 103 (349)
+.++++|.++++.+..+... -.-.+..+|+++.+++++ ..-.|.+||..+......+..-..+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 57999999999987776642 233466899999988754 23479999998754333322221101
Q ss_pred cceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceec
Q 018858 104 EEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~ 142 (349)
.....++++.+++++++.. ---.|.|.|+..++.+.++.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~ 135 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID 135 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec
Confidence 1223467888888877653 34568999999988887776
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.69 E-value=0.028 Score=48.64 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=69.2
Q ss_pred eeeEEEEecCCCceEEEe-CC----CCcEEEEECCCCcEEEE-eecCCCCeEEEEEecCCCEEEEEeCCC----------
Q 018858 17 TATCCIASRDRPGFVASS-GE----DGCICWFDLRSKDVQLV-TDVGNGPVTSLCFKSGNEDIIYVSSGK---------- 80 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~-~~----dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg---------- 80 (349)
.+....++|+ +++++-+ +. ...|+++|+++++.+.. +... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 4446788998 6776633 22 24699999999977543 2221 122399999988877765332
Q ss_pred -eEEEEEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcC---C-CcEEEEEcCCc
Q 018858 81 -EVKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADD---G-GDVKIIDIRQH 135 (349)
Q Consensus 81 -~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~ 135 (349)
.|+.|.+.++... ..+............+..++++++++.... + ..+++.|+..+
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 4777887765322 122222211112567888999998875432 2 34788888764
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.026 Score=48.07 Aligned_cols=155 Identities=13% Similarity=0.171 Sum_probs=93.8
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcccce
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 96 (349)
...+...+++.+..++-.....+..-+...................++.++.+..+.... .++.|.+.|..+......+
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~ 112 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI 112 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe
Confidence 344566666223333333223455544442111111121113345678888888655544 4588999997654333322
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcC---CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccc
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQC 173 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
.. ......++++|+++.+..+.. ++.+.+.|-.+++...... ....+ ..+++.|
T Consensus 113 ~v----G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P-~~~a~~p----------------- 169 (381)
T COG3391 113 PV----GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTP-TGVAVDP----------------- 169 (381)
T ss_pred ee----ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCc-ceEEECC-----------------
Confidence 22 125678999999977766554 6889999998888887755 32233 7888888
Q ss_pred cCCceeEEeecCcccccCCCCcEEEEE-cCCCeEEEEEccCc
Q 018858 174 YNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESE 214 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~ 214 (349)
++..+.+. ..++.|.++|....
T Consensus 170 -------------------~g~~vyv~~~~~~~v~vi~~~~~ 192 (381)
T COG3391 170 -------------------DGNKVYVTNSDDNTVSVIDTSGN 192 (381)
T ss_pred -------------------CCCeEEEEecCCCeEEEEeCCCc
Confidence 67755554 47899999997753
No 367
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.69 E-value=0.0061 Score=46.93 Aligned_cols=105 Identities=10% Similarity=0.067 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC
Q 018858 115 SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN 194 (349)
Q Consensus 115 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
..+++.|+..+.+.-.|..+|+.+.+-. -..++.+-+.- -|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-------------------------------------vg 63 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-------------------------------------VG 63 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-------------------------------------EC
Confidence 3567888889999999999998876544 23334333322 26
Q ss_pred cEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcce-EEEEEe
Q 018858 195 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA-SCVAFS 273 (349)
Q Consensus 195 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i-~~i~~~ 273 (349)
++++.|+..|.+++.+.+++.. ...+..- +.| ......
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~----------------------------------------~w~f~~~-~~vk~~a~~d 102 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQ----------------------------------------IWNFVIL-ETVKVRAQCD 102 (354)
T ss_pred CEEEEEEccCcEEEEEecchhh----------------------------------------eeeeeeh-hhhccceEEc
Confidence 7799999999999999998621 1112111 111 122344
Q ss_pred eecCCccEEEEeeCCCeEEEEecCCCcce
Q 018858 274 MFGERGKYLISGGNDKLVKVWDCSRFQGV 302 (349)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 302 (349)
+++..+..|+.|+..+..|.++...+
T Consensus 103 ---~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 103 ---FDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred ---CCCceEEEecCCCcEEEecccccceE
Confidence 78899999999999999999987544
No 368
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.017 Score=45.54 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=109.8
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC-CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
.+-...|.++.|+|+ .+.|++......-.|+=..+|+.+.+++-. -.....|.+..++++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344556999999999 677777776677777766778888777532 233456888888888888778888988877654
Q ss_pred Cccc-------ceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec--ccc-------ccceeEEEE
Q 018858 91 ASWR-------PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGH-------SSICSSVQF 154 (349)
Q Consensus 91 ~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~-------~~~v~~~~~ 154 (349)
.... ++............++|.|..+.|..+-+..-+.||.+......-... ..+ -..+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2221 122222224567889999999888888888888888766322100000 001 123455556
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
++. .+.+|+-+.+++.+.-.|...
T Consensus 241 ~~~-----------------------------------~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 241 NAI-----------------------------------TNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cCC-----------------------------------CCcEEEEecCCceEEEEecCC
Confidence 553 677788888888888888775
No 369
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.57 E-value=0.029 Score=45.51 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=43.2
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 68 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
..++.|+.|+.+| +.++++........+.. ...|..+...|+-+.+++-+ |+.++++++..-.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~ 67 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLE 67 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhc
Confidence 3578899999888 89999833222222222 23489999988777766654 4899999987543
No 370
>PHA02713 hypothetical protein; Provisional
Probab=97.57 E-value=0.036 Score=49.76 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=45.5
Q ss_pred cEEEEECCCCcEEE--EeecCCCCeEEEEEecCCCEEEEEeCC------CeEEEEEccCCCcccceeeccCcccceEEEE
Q 018858 39 CICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSG------KEVKSFDVHMPASWRPLESYNYNKEEINQIV 110 (349)
Q Consensus 39 ~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 110 (349)
.+..||..+.+... .++..... .+++. -++...+.||.+ ..+..||..+.. ...+..+...........
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~-W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKI-HVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCe-EeeCCCCcchhhceeEEE
Confidence 46778887665322 22111111 12222 356666777753 357788887643 222222221111222222
Q ss_pred EccCCCEEEEEcCCC-----cEEEEEcCCc
Q 018858 111 CNPKSSFLACADDGG-----DVKIIDIRQH 135 (349)
Q Consensus 111 ~~~~~~~l~~~~~dg-----~i~i~d~~~~ 135 (349)
-+++..+.|+.++ .+..||..+.
T Consensus 350 --~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 350 --IDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred --ECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 2567777887654 3777887654
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.57 E-value=0.029 Score=50.41 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=51.4
Q ss_pred CCeEEEEEecCCCEEEEEe------CCC--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC------
Q 018858 59 GPVTSLCFKSGNEDIIYVS------SGK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG------ 124 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------ 124 (349)
..+...+++|+|+.++... .|. .|.+++.. .....+. .+ ...+.-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt--~g--~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVL--EG--HSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--Ccceeee--cC--CCCCCceECCCCCceEEEecCcceEEE
Confidence 4677889999999987765 243 45555542 2223322 21 237788999998877766432
Q ss_pred ------CcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 125 ------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 125 ------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+.+.+.++..++... . ....|..+.|+|
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~--~~g~Issl~wSp 457 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--R--VPGPISELQLSR 457 (591)
T ss_pred eccCCCceEEEEeccCchhhh--c--cCCCcCeEEECC
Confidence 233333443332222 1 234688888888
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0024 Score=54.05 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=91.6
Q ss_pred CCCEE-EEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCC
Q 018858 114 KSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 192 (349)
Q Consensus 114 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
+.++| ..+.....++-.|++.|+.+.+.+ .+.. |.-+.+.|+......
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql----------------------------- 392 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQL----------------------------- 392 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEee-ccCC-cceeeccCCcchhcc-----------------------------
Confidence 33444 345555679999999999999998 4443 777778885332210
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 272 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~ 272 (349)
+...-++|-.+..|.-||.+-.-. ..|+ ...-+.+. ......|.+-
T Consensus 393 ~~e~TlvGLs~n~vfriDpRv~~~---------------------~kl~------------~~q~kqy~-~k~nFsc~aT 438 (644)
T KOG2395|consen 393 TSEQTLVGLSDNSVFRIDPRVQGK---------------------NKLA------------VVQSKQYS-TKNNFSCFAT 438 (644)
T ss_pred cccccEEeecCCceEEecccccCc---------------------ceee------------eeeccccc-cccccceeee
Confidence 111224566778898999884200 0011 01111121 1234556665
Q ss_pred eeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 273 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
. ...+++.||.+|.||+||--.. .-...+.+...+|..+..+. +|++|+..+..
T Consensus 439 T----~sG~IvvgS~~GdIRLYdri~~---------~AKTAlPgLG~~I~hVdvta-dGKwil~Tc~t 492 (644)
T KOG2395|consen 439 T----ESGYIVVGSLKGDIRLYDRIGR---------RAKTALPGLGDAIKHVDVTA-DGKWILATCKT 492 (644)
T ss_pred c----CCceEEEeecCCcEEeehhhhh---------hhhhcccccCCceeeEEeec-cCcEEEEeccc
Confidence 4 4459999999999999997332 33345667888999999977 88877665543
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.55 E-value=0.032 Score=45.49 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=95.3
Q ss_pred ecCCCceEEEeCCCCcEEEEECC-CCcEEEEe----ecCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 018858 24 SRDRPGFVASSGEDGCICWFDLR-SKDVQLVT----DVGNGPVT-SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 24 ~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~----~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (349)
-|.+..-+.+-+.||.+.-..+. .|+..... .....++. .-++...+..++..+.+|.|+-.|+.... .+...
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~ 221 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGK 221 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccC
Confidence 34434567788889999999887 45553221 11222332 33455566667778899999998887532 22222
Q ss_pred eccC----------cccceEEEEEccCCCEEEEEcC---CC-------cEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 98 SYNY----------NKEEINQIVCNPKSSFLACADD---GG-------DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 98 ~~~~----------~~~~v~~~~~~~~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
.+.. ..+.-.-+++++..+.|.+-.. ++ .|.++|+.+++.+..+. -..++.+++.+.+
T Consensus 222 ~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd 299 (342)
T PF06433_consen 222 PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQD 299 (342)
T ss_dssp EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESS
T ss_pred cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccC
Confidence 2110 0123445788876655544321 11 48899999999999887 3456888999884
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE-EcCCCeEEEEEccCceeeeecC
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
+..+|+. ...++.|.+||..+++.+....
T Consensus 300 -----------------------------------~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 300 -----------------------------------DKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp -----------------------------------SS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred -----------------------------------CCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 3345544 4568999999999986655443
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0031 Score=57.92 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=72.9
Q ss_pred CceEEEeCCCCcEEEEECCCC-cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccce
Q 018858 28 PGFVASSGEDGCICWFDLRSK-DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (349)
+..++.|+..|.+-..|.... .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+.........+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 446778888888888886542 1111112245899999999999999999999999999999876666555544334445
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEEc
Q 018858 107 NQIVCNPKSSFLACADDGGDVKIIDI 132 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~i~d~ 132 (349)
-.+.+..++..++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 55556666677888877776 4554
No 375
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.50 E-value=0.03 Score=45.50 Aligned_cols=139 Identities=15% Similarity=0.197 Sum_probs=69.2
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc-CCCc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH-MPAS 92 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~ 92 (349)
-.+.+..+.-+++ +.+++++..-..+.-||.-...-...-......|..|.|.|++...+ ..+.|.|+.=+.. ..+.
T Consensus 143 ~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccc
Confidence 3466888888887 88888887655666787543222222233568899999999977655 4478888877621 1111
Q ss_pred c-cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc--ccccceeEEEEcc
Q 018858 93 W-RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFIP 156 (349)
Q Consensus 93 ~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~ 156 (349)
. +.+.......-.+..++|.+++...++|+. |.+ +.....|+.-+..+. .-...++.+.|.+
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~ 285 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN 285 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcC
Confidence 1 111111112234789999988877776665 444 344455543333221 3345678888876
No 376
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0045 Score=52.49 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=82.0
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCE-------EEEEeCCCeEEEEEccCCCcccceeeccCc-
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED-------IIYVSSGKEVKSFDVHMPASWRPLESYNYN- 102 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 102 (349)
|.++.....|+--|++.|+.+..++.+.. |..+.+.|+.+. -+.|-.+..|.-||.+-... ..+...+.+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeeccc
Confidence 44566667788889999999999887766 777778776532 34466678899999874221 122211111
Q ss_pred ---ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe-ceeccccccceeEEEEcc
Q 018858 103 ---KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 103 ---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~ 156 (349)
.....|.+-..+ .++|+|+.+|.|++||- .+..- ..++ +...+|..+..+.
T Consensus 427 y~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvta 481 (644)
T KOG2395|consen 427 YSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTA 481 (644)
T ss_pred cccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeec
Confidence 223455555544 48999999999999996 44333 3455 7888899999888
No 377
>PHA02713 hypothetical protein; Provisional
Probab=97.46 E-value=0.022 Score=51.05 Aligned_cols=92 Identities=8% Similarity=0.035 Sum_probs=45.3
Q ss_pred CceEEEeCCC------CcEEEEECCCCcEEE--EeecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEEccCCCccc
Q 018858 28 PGFVASSGED------GCICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSGK-----EVKSFDVHMPASWR 94 (349)
Q Consensus 28 ~~~l~t~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 94 (349)
+.+.+.||.+ ..+..||..+..... .+....... +++ .-+++..+.||.++ .+..||..+.+ ..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~-W~ 380 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDK-WK 380 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCe-EE
Confidence 5677777753 246778877654321 111111111 222 23566777777653 58889987642 33
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEcCC
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACADDG 124 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 124 (349)
.+..++........+++ +++..+.|+.+
T Consensus 381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~ 408 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL--DQYIYIIGGRT 408 (557)
T ss_pred ECCCCCcccccccEEEE--CCEEEEEeCCC
Confidence 33222211111222222 56667777755
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.00038 Score=52.25 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=79.6
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeeccCcccceEEE-EEccCCCEEEEEcCCCcEEEEEcCC-ceEeceecccccccee
Q 018858 73 IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI-VCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICS 150 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~ 150 (349)
+..-+.+|.|.-++++..+. ....- ..+.+. ....-+..+++|+.+|.|++|.... +.....+. .....+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~--s~rse----~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-s~~e~i~ 105 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKE--SCRSE----RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVC-SGEESID 105 (238)
T ss_pred hccccCCcccccchhhhhhh--hhhhh----hhhhcceeecccCceEEeecccceEEEecCCccchHHHhhh-cccccce
Confidence 44455677787777764211 11111 111111 1122356799999999999998762 11111111 1112222
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccce
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 230 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (349)
++--.- .++.+..++..+|.|+.|++.-.
T Consensus 106 ~~Ip~~-----------------------------------~~~~~~c~~~~dg~ir~~n~~p~---------------- 134 (238)
T KOG2444|consen 106 LGIPNG-----------------------------------RDSSLGCVGAQDGRIRACNIKPN---------------- 134 (238)
T ss_pred eccccc-----------------------------------cccceeEEeccCCceeeeccccC----------------
Confidence 221111 15668889999999999998853
Q ss_pred eeeeccccEEEEeeeeeecCceeeeeeeeecCCC-cceEEEEEeeecCCccEEEEe--eCCCeEEEEecCCCcc
Q 018858 231 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISG--GNDKLVKVWDCSRFQG 301 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~i~~~~~~~~~~~l~s~--~~d~~i~vwd~~~~~~ 301 (349)
+.+.....|. .++.....+ ..+++++.+ |.|..++.|++.....
T Consensus 135 ------------------------k~~g~~g~h~~~~~e~~ivv---~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 135 ------------------------KVLGYVGQHNFESGEELIVV---GSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred ------------------------ceeeeeccccCCCcceeEEe---cCCceEEeeccccchhhhhcchhhhhc
Confidence 1222222343 344444444 466778777 8888888888876543
No 379
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.041 Score=43.48 Aligned_cols=76 Identities=12% Similarity=0.235 Sum_probs=55.0
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEe
Q 018858 103 KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAI 182 (349)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (349)
...+.++.|+|+.+.|++......-.++=..+|+.++++....-.....+.+..
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-------------------------- 138 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-------------------------- 138 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec--------------------------
Confidence 455999999999998888777776666655678888887633333445566655
Q ss_pred ecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 183 AIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
++++.++--.++.+.++.+...
T Consensus 139 ----------~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 139 ----------GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ----------CCEEEEEehhcceEEEEEEcCC
Confidence 5666666668888988888754
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0032 Score=57.83 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=62.6
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccc
Q 018858 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI 148 (349)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 148 (349)
.+..++.|+..|.+-..|+... ..++..-..-..+|++++|+.+|..++.|-.+|.|.+||+..++.++.+. .+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCc
Confidence 3556888888888888887642 22222222235789999999999999999999999999999999888887 66665
Q ss_pred eeEEEE
Q 018858 149 CSSVQF 154 (349)
Q Consensus 149 v~~~~~ 154 (349)
..++-+
T Consensus 175 ~t~vi~ 180 (1206)
T KOG2079|consen 175 VTGVIF 180 (1206)
T ss_pred cceEEE
Confidence 555443
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.27 E-value=0.053 Score=48.77 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=72.0
Q ss_pred eeeeEEEEecCCCceEEEeC------CCC--cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC--------
Q 018858 16 ATATCCIASRDRPGFVASSG------EDG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-------- 79 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------- 79 (349)
..+...+++|+ ++.++... .|. .|.+++.. +.......+ .....-.|+|+|+.|++....
T Consensus 350 ~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence 35778899998 55554332 233 55555643 222222222 237788999998888776532
Q ss_pred ----CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEE---EEcCCceE-e---ceeccccccc
Q 018858 80 ----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI---IDIRQHCL-Y---KSLRAGHSSI 148 (349)
Q Consensus 80 ----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~~~~~~~ 148 (349)
+.+.+.+++.+.... .....|..+.|+|||..++... ++.|++ -....+.. + ..+.......
T Consensus 426 ~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 233333443322111 1245799999999999887765 467776 44334431 1 1122122233
Q ss_pred eeEEEEcc
Q 018858 149 CSSVQFIP 156 (349)
Q Consensus 149 v~~~~~~~ 156 (349)
+..+.|.+
T Consensus 499 ~~~l~W~~ 506 (591)
T PRK13616 499 AVSLDWRT 506 (591)
T ss_pred cccceEec
Confidence 56677776
No 382
>PHA03098 kelch-like protein; Provisional
Probab=97.25 E-value=0.12 Score=46.45 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=50.7
Q ss_pred CceEEEeCCCC------cEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCccc
Q 018858 28 PGFVASSGEDG------CICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWR 94 (349)
Q Consensus 28 ~~~l~t~~~dg------~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 94 (349)
+.+++.||.++ .+..||..+.+.... +........ ++ .-+++..+.||.+ ..+..||..+++ ..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~-~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG-VT-VFNNRIYVIGGIYNSISLNTVESWKPGESK-WR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce-EE-EECCEEEEEeCCCCCEecceEEEEcCCCCc-ee
Confidence 46677776543 467788776654221 111111112 22 2256677777765 357788877643 22
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEcCC------CcEEEEEcCCc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACADDG------GDVKIIDIRQH 135 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~ 135 (349)
....++...... +++ .-+++..+.|+.+ ..+..||..+.
T Consensus 372 ~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 372 EEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred eCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 222222111111 112 1245666777632 34777777654
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.0013 Score=49.43 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=43.6
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccc-cceEEEEeecCCCCcEEEe--eCCCeEEEeeC
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVC--DTSKVVKVYSI 348 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~--~~dg~i~iw~~ 348 (349)
.++.+..+++.||.||.|++.-. +.+.....|. .++....... .+++++.+ |.|..++.|++
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~---------k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPN---------KVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred cccceeEEeccCCceeeeccccC---------ceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcch
Confidence 45568889999999999999887 5555555566 4454444434 44567777 77778888876
No 384
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.24 E-value=0.00086 Score=37.14 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=29.6
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV 50 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~ 50 (349)
...|.+++|+|. .++||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999 899999999999999998 4443
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.067 Score=42.11 Aligned_cols=103 Identities=11% Similarity=0.086 Sum_probs=68.1
Q ss_pred eeEEEEecCCCceEEEeCCCCc-EEEEECCCCcEEEEeecCCCCe--EEEEEecCCCEEEEEeCC-----CeEEEEEccC
Q 018858 18 ATCCIASRDRPGFVASSGEDGC-ICWFDLRSKDVQLVTDVGNGPV--TSLCFKSGNEDIIYVSSG-----KEVKSFDVHM 89 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 89 (349)
-..++|+|.-..-++.+-.-|+ ..++|....+...++...+..- -.=.|||+|.+|...-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3446677764455666655554 4688888776655543222111 112589999988776544 7899999984
Q ss_pred CCcccceeeccCcccceEEEEEccCCCEEEEEc
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 122 (349)
+ ...+-.+..|.-....+.|.+||+.++.+.
T Consensus 150 ~--fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 150 G--FQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred c--cceecccccCCcCcceeEEecCCcEEEEeC
Confidence 3 445556666767778899999999998764
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.16 E-value=0.08 Score=41.67 Aligned_cols=206 Identities=9% Similarity=-0.050 Sum_probs=108.5
Q ss_pred EEEEeecCC-CCeEEEEEecCCCEEEEEeCCC--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCc
Q 018858 50 VQLVTDVGN-GPVTSLCFKSGNEDIIYVSSGK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD 126 (349)
Q Consensus 50 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (349)
.+.+++... .....+.|..++.++-+.+.-| .|+.+|+.+++...... ++. .---..++...+ +.....=.++.
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~-l~~-~~FgEGit~~~d-~l~qLTWk~~~ 111 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVP-LPP-RYFGEGITILGD-KLYQLTWKEGT 111 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TT-T--EEEEEEETT-EEEEEESSSSE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE-CCc-cccceeEEEECC-EEEEEEecCCe
Confidence 345555322 3345688877788777777655 79999999875433222 211 112233444432 33333446788
Q ss_pred EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 127 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
..+||..+-+.+.++. ..+.=..++. ++..|+.......|
T Consensus 112 ~f~yd~~tl~~~~~~~--y~~EGWGLt~--------------------------------------dg~~Li~SDGS~~L 151 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFP--YPGEGWGLTS--------------------------------------DGKRLIMSDGSSRL 151 (264)
T ss_dssp EEEEETTTTEEEEEEE---SSS--EEEE--------------------------------------CSSCEEEE-SSSEE
T ss_pred EEEEccccceEEEEEe--cCCcceEEEc--------------------------------------CCCEEEEECCccce
Confidence 9999999988888877 3344455553 56677777778899
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
+++|..+.+...... ...+| ..-..++.+.+. +|...|=.=
T Consensus 152 ~~~dP~~f~~~~~i~-----------V~~~g------------------------~pv~~LNELE~i----~G~IyANVW 192 (264)
T PF05096_consen 152 YFLDPETFKEVRTIQ-----------VTDNG------------------------RPVSNLNELEYI----NGKIYANVW 192 (264)
T ss_dssp EEE-TTT-SEEEEEE------------EETT------------------------EE---EEEEEEE----TTEEEEEET
T ss_pred EEECCcccceEEEEE-----------EEECC------------------------EECCCcEeEEEE----cCEEEEEeC
Confidence 999987642211110 00000 012245666665 565555554
Q ss_pred CCCeEEEEecCCCcceecccccceeeec------cccccceEEEEeecCCCCcEEEe
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKN------INLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
....|...|..++.......-..+.... ....+-.+.||+.|..+++++||
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5556666677776443211111111110 11245689999999777777776
No 387
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.14 E-value=0.12 Score=43.20 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=47.1
Q ss_pred eeeeecCCCcceEEEEEee---e-cCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCC
Q 018858 256 LDYSVGGHTAAASCVAFSM---F-GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 331 (349)
Q Consensus 256 ~~~~~~~h~~~i~~i~~~~---~-~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 331 (349)
+...+..| ..+..+.|-. + .-.|.++++.-..+.|....++...... .....+......+..+++.| ||
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~r~~~v~~~p-DG 317 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT-----EEEEFLGGFGGRPRDVAQGP-DG 317 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE-----EEEEECTTSSS-EEEEEEET-TS
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc-----ceEEccccCCCCceEEEEcC-CC
Confidence 34445545 4566777652 0 0145677776667788888886543211 12222344555899999988 88
Q ss_pred CcEEEeeCCCeEE
Q 018858 332 ENLVVCDTSKVVK 344 (349)
Q Consensus 332 ~~l~~~~~dg~i~ 344 (349)
.+.++.+.+|.|+
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 8777777788764
No 388
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.14 E-value=0.0017 Score=35.93 Aligned_cols=32 Identities=13% Similarity=0.311 Sum_probs=28.8
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
..|.+++|+|...++|.++.+|.|.++.+ +++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 56899999999999999999999999998 444
No 389
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.92 E-value=0.18 Score=45.39 Aligned_cols=110 Identities=11% Similarity=0.114 Sum_probs=58.1
Q ss_pred eEEEEecCCCceEEEeCCC------CcEEEEECCCCcEEE--EeecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEE
Q 018858 19 TCCIASRDRPGFVASSGED------GCICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSGK-----EVKSF 85 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw 85 (349)
.++++.. +.+.++||.| .++..||..+.+-.. .+........ ++ .-+|...++|+.|| ++..|
T Consensus 326 ~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 326 VGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEe
Confidence 3444443 5788889888 346677777665332 1111111111 11 22577788888886 57788
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC------cEEEEEcCCc
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG------DVKIIDIRQH 135 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~ 135 (349)
|..+.+ ..............-... -++...++|+.++ .+..||..++
T Consensus 402 Dp~~~~-W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 402 DPVTNK-WTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred cCCCCc-ccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 877643 222222211111122222 2577778887554 4667776654
No 390
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.72 E-value=0.31 Score=41.58 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=33.3
Q ss_pred eeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 256 ~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
....+......+.+|..+ |++++.++...=|.|.++|+.++
T Consensus 299 ~r~~l~D~~R~~~~i~~s---P~~~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLS---PSGRLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred eEEeeccCCceEEEEEEC---CCCCEEEEEcCCCcEEEEECCCC
Confidence 344555666778999999 88888888777799999999997
No 391
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.2 Score=41.01 Aligned_cols=136 Identities=10% Similarity=0.062 Sum_probs=81.0
Q ss_pred eeEEEEecCCCceEEEeCC------C---CcEEEEECC-CCcEEEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEE
Q 018858 18 ATCCIASRDRPGFVASSGE------D---GCICWFDLR-SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFD 86 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~------d---g~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd 86 (349)
-+.+...|+ |.+.++... . ..=.+|-+. .+..+..+..+-..-+.|+|||+++.++.+-. .+.|.-|+
T Consensus 113 ~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 113 PNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 345566676 555554332 0 011344444 45555555555556678999999988877754 47888887
Q ss_pred ccC--CCcc--cceeeccCcccceEEEEEccCCCEEEEEcCCC-cEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 87 VHM--PASW--RPLESYNYNKEEINQIVCNPKSSFLACADDGG-DVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 87 ~~~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+.. +... ..........+..-.++...+|.+.+++...| .|.+|+.. ++.+..++ .....+++++|--
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~-lP~~~~t~~~FgG 264 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK-LPVKRPTNPAFGG 264 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE-CCCCCCccceEeC
Confidence 762 1111 11111222334555677777787775554444 89999987 88888877 4446677777754
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.70 E-value=0.21 Score=39.36 Aligned_cols=118 Identities=12% Similarity=0.070 Sum_probs=70.5
Q ss_pred eeeeEEEEecCCCceEEEeCCCC--cEEEEECCCCcEEEEeecCC-CCeEEEEEecCCCEEE-EEeCCCeEEEEEccCCC
Q 018858 16 ATATCCIASRDRPGFVASSGEDG--CICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~ 91 (349)
.-...+.|..+ +.++-+.+.-| .|+.+|+.+++......-.. -.-..++.. ++.|. ..=.++...+||..+-+
T Consensus 45 aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 34666777665 67777777665 79999999998766554322 222334444 33343 34467899999998643
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.+..+.. ...=+.++ .+++.|+.......++++|..+.+..+.+.
T Consensus 122 ---~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 122 ---KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp ---EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred ---EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 3333322 24455666 466677777667789999988776665554
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.34 E-value=0.4 Score=38.28 Aligned_cols=135 Identities=12% Similarity=-0.005 Sum_probs=75.4
Q ss_pred eeeEEEEecCCCceEEEeC---CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE-ccCCCc
Q 018858 17 TATCCIASRDRPGFVASSG---EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD-VHMPAS 92 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~ 92 (349)
.+.+.+++++ ++.++... ....++++... .....+. ....+....|++++...+....+....++. ...+..
T Consensus 25 ~~~s~AvS~d-g~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPD-GSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCC-CCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 6888999999 55544333 33455555543 2222221 233677889999977666666566666663 233221
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEc---CCCcEEEEEcC---Cc--eE----eceeccccccceeEEEEcc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACAD---DGGDVKIIDIR---QH--CL----YKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~--~~----~~~~~~~~~~~v~~~~~~~ 156 (349)
....-........|+.+.++|||..++.-. .++.|.+--+. .+ .. ..... .....+..+.|.+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWSD 175 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeecC
Confidence 111111111112799999999998776554 34667766543 22 11 11111 2245678888887
No 394
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.4 Score=38.17 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=79.6
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec--CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV--GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
-+..+.++ +++...+..+.-++|.|+.+......+.. ..+--.+ |.-.|++..++..|.-+.+.|+.+.....
T Consensus 88 l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 88 LFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 34455565 45777777778899999987654322211 1122233 34458888888866668888998766544
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce---EeceeccccccceeEEEEcc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC---LYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~ 156 (349)
....+.........++.+ |++-..+..|+-+.+.|+.... .+.... ....+.++..++
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n--~g~g~~sv~vsd 223 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN--TGPGTYSVSVSD 223 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe--cCCceEEEEecC
Confidence 444443333444566665 6677777788999999998543 222222 223566666665
No 395
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.29 E-value=0.78 Score=41.08 Aligned_cols=55 Identities=7% Similarity=-0.070 Sum_probs=38.2
Q ss_pred cEEEEECCCCcEEEEeecCCC---------CeEEEEEecCCC---EEEEEeCCCeEEEEEccCCCcc
Q 018858 39 CICWFDLRSKDVQLVTDVGNG---------PVTSLCFKSGNE---DIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
.|.--|+++++....++.... ...-+.+..+|+ .++.+.++|.+++.|.++++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 577778999999887765221 112222334665 6778999999999999988653
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.28 E-value=0.35 Score=37.09 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=42.0
Q ss_pred EEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEe
Q 018858 269 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
.+++. .+|++.++.-..++|...|..++ +++..+.-....|+++||--++-..+++.
T Consensus 216 Gm~ID---~eG~L~Va~~ng~~V~~~dp~tG---------K~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 216 GMTID---TEGNLYVATFNGGTVQKVDPTTG---------KILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred cceEc---cCCcEEEEEecCcEEEEECCCCC---------cEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 34445 67888888888899999999999 66767666788999999954432344443
No 397
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.24 E-value=0.83 Score=40.92 Aligned_cols=109 Identities=11% Similarity=0.009 Sum_probs=67.3
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCC-CCeE----------EEEEecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVT----------SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (349)
..++.++.++.|+-.|..+++.+..+.... ..+. .+++ .+..++.++.++.|.-.|.++++......
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 467777778899999999999988765321 1111 1122 23567788889999999999886544332
Q ss_pred eccCcc--cceEE-EEEccCCCEEEEEc------CCCcEEEEEcCCceEeceec
Q 018858 98 SYNYNK--EEINQ-IVCNPKSSFLACAD------DGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 98 ~~~~~~--~~v~~-~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~ 142 (349)
.. .+. ..+++ ..+. ++ .++++. .+|.|.-+|.++|+.+..+.
T Consensus 148 ~~-~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 148 NG-DYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cc-cccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 21 110 01111 1111 33 444443 26889999999999887765
No 398
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.23 E-value=0.39 Score=43.22 Aligned_cols=72 Identities=8% Similarity=-0.001 Sum_probs=46.7
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
++-+.-+.-++..++-+....+.|||.+.+....+-.....+.|.++.|..
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWts----------------------------- 82 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTS----------------------------- 82 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeee-----------------------------
Confidence 344444444454455555567999999987643332212467899999876
Q ss_pred cccccCCCCcEEEEEcCCCeEEEEEc
Q 018858 186 DADMLDKTNKICVVAKGDGVVDVINI 211 (349)
Q Consensus 186 ~~~~~~~~~~~l~~~~~dg~i~i~d~ 211 (349)
.++++.+++-+....|.+|.-
T Consensus 83 -----t~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 83 -----TPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred -----cCCCCEEEEEEcCcEEEEEEc
Confidence 226777777777888888865
No 399
>PHA03098 kelch-like protein; Provisional
Probab=96.19 E-value=0.91 Score=40.94 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=32.6
Q ss_pred cCCCEEEEEeCCC------eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC-----cEEEEEcCCc
Q 018858 68 SGNEDIIYVSSGK------EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDIRQH 135 (349)
Q Consensus 68 ~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~ 135 (349)
.++..++.|+.++ .+..||..+.+ ...+............+. -+++.++.|+.++ .+..||..++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKS-WNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCe-eeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 3455666666542 57788877643 222222221112222222 2566777777652 3556666543
No 400
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.18 E-value=0.019 Score=30.77 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=27.4
Q ss_pred eeeeEEEEecCCC--ceEEEeCCCCcEEEEECCC
Q 018858 16 ATATCCIASRDRP--GFVASSGEDGCICWFDLRS 47 (349)
Q Consensus 16 ~~i~~~~~~~~~~--~~l~t~~~dg~i~vwd~~~ 47 (349)
+.|.++.|+|.++ ++|+.+-..|.+.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998756 7899888889999999984
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.23 Score=46.84 Aligned_cols=150 Identities=15% Similarity=0.046 Sum_probs=95.5
Q ss_pred CCeEEEEEecCCCEEEEE--eCCCeEEEEEccCCCcc-----cceee---ccCcccceEEEEEccCC-CEEEEEcCCCcE
Q 018858 59 GPVTSLCFKSGNEDIIYV--SSGKEVKSFDVHMPASW-----RPLES---YNYNKEEINQIVCNPKS-SFLACADDGGDV 127 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~-----~~~~~---~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i 127 (349)
-++..+...+|+...++. +.+-.|..||+++-... .++.. .........++.|+|.- ...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 455566666776654433 34447899999753211 11111 11112345678888854 445667788889
Q ss_pred EEEEcCCc-eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 128 KIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 128 ~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
++..+... .....++ .....++++|+| .|+.+++|...|++
T Consensus 181 ~V~~~~~~~~~v~s~p--~t~~~Tav~WSp------------------------------------rGKQl~iG~nnGt~ 222 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP--VTNSQTAVLWSP------------------------------------RGKQLFIGRNNGTE 222 (1405)
T ss_pred hhhhhhhhhhhhcccC--cccceeeEEecc------------------------------------ccceeeEecCCCeE
Confidence 88877632 2333444 556789999999 89999999999999
Q ss_pred EEEEccCceeee--ecCCCCCCccceeeeeccccEEEEeeee
Q 018858 207 DVINIESELNIS--RSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 207 ~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.-|...-..... .........+.+++|-....++++.+..
T Consensus 223 vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n~ 264 (1405)
T KOG3630|consen 223 VQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYGNV 264 (1405)
T ss_pred EEeecccceeecccCCCcCCCcceeEEEEecceeEEEEeccc
Confidence 988876543222 2222234667889999999998874443
No 402
>PHA02790 Kelch-like protein; Provisional
Probab=96.06 E-value=0.97 Score=40.07 Aligned_cols=103 Identities=8% Similarity=-0.096 Sum_probs=50.2
Q ss_pred CceEEEeCCCC-----cEEEEECCCCcEEE--EeecCCCCeEEEEEecCCCEEEEEeCC--CeEEEEEccCCCcccceee
Q 018858 28 PGFVASSGEDG-----CICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSG--KEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 28 ~~~l~t~~~dg-----~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~ 98 (349)
+.+++.||.++ .+..||..+.+... .+....... +++ .-++...+.|+.+ ..+..||..+++ ...+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~-W~~~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAA-WVNMPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCe-EEECCC
Confidence 46667777543 46677877654322 111111111 122 2356666777753 357788876532 223333
Q ss_pred ccCcccceEEEEEccCCCEEEEEcCCC---cEEEEEcCCc
Q 018858 99 YNYNKEEINQIVCNPKSSFLACADDGG---DVKIIDIRQH 135 (349)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~ 135 (349)
++........+. -+++..+.|+.++ .+..||.++.
T Consensus 349 l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 349 LLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCC
Confidence 321111111222 2566677777543 3566776544
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.00 E-value=0.3 Score=45.07 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=32.4
Q ss_pred CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 263 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 263 h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+...|..+.|+|+++++..|+.-..|+++|+||+....
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 45689999999877778999999999999999997643
No 404
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.98 E-value=0.52 Score=41.40 Aligned_cols=131 Identities=13% Similarity=0.054 Sum_probs=72.5
Q ss_pred eeeeEEEEecCCCceEE-EeC--CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecC----CCEEEEEeCCCeEEEEEcc
Q 018858 16 ATATCCIASRDRPGFVA-SSG--EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG----NEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~-t~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~ 88 (349)
.+|..++|. | |+.++ |.= .+|..+.=| .+.+. .-+.|..+.|.|- ...+++......|.||.+.
T Consensus 20 HPvhGlaWT-D-GkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-D-GKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-C-CCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 578888887 3 44444 321 122222221 12222 3345899999884 3346666667889999886
Q ss_pred C--CCcccceeeccCc-----ccceEEEEEccCCCEEEEEcCCCcEEEEEcCC--ceEeceeccccccceeEEEEccC
Q 018858 89 M--PASWRPLESYNYN-----KEEINQIVCNPKSSFLACADDGGDVKIIDIRQ--HCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 89 ~--~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
- .+..+.+.....+ .--.....|+|....|++-.....=.+++++. ......++ ..+.|.|.+|.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~D 166 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKD 166 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCc
Confidence 2 1111221111100 01124567999988887666554444566652 23333344 6678999999993
No 405
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.96 E-value=0.91 Score=38.96 Aligned_cols=149 Identities=12% Similarity=0.207 Sum_probs=85.0
Q ss_pred cCCCceEEEeCCCCcEEEEECCCCc-----EEEEeecCCCCeEEEEEec----CCCEEEEEeCCCeEEEEEccCCCc---
Q 018858 25 RDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVGNGPVTSLCFKS----GNEDIIYVSSGKEVKSFDVHMPAS--- 92 (349)
Q Consensus 25 ~~~~~~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~--- 92 (349)
+++...+++|+..|.++||+..... .+.+.+ -..+|..++.-+ .....++.-.-..+.||.+.....
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 3346789999999999999985433 222222 356788776532 222333335567788888742110
Q ss_pred ---ccceeeccCcc--cceEEEEEcc----C-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 93 ---WRPLESYNYNK--EEINQIVCNP----K-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 93 ---~~~~~~~~~~~--~~v~~~~~~~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
...+.....|. .....+++-| . ..++.+-+-||.+.+|+-+.-.....+. .---...+.|.+
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~------ 184 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCP------ 184 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEee------
Confidence 01111111111 1222333322 2 3678888999999999965443333333 122233456666
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
..+.|++++.+..+.-|...
T Consensus 185 ------------------------------~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 185 ------------------------------RTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ------------------------------cCCEEEEecCceeEEEecHH
Confidence 56778888888888888764
No 406
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.86 E-value=1.5 Score=40.66 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=50.3
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEe
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAI 182 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (349)
-.|..+.++|+|++++..+..| |.|..+-. ......+. +....+.|-.+.=+..+ ...-....+..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~-~g~~~i~Crt~~v~~~~----------~~~~~~~~i~qv 152 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFE-DGKKEINCRTVPVDERF----------FTSNSSLEIKQV 152 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCcccccc-CCCcceeEEEEEechhh----------ccCCCCceEEEE
Confidence 4688899999999999888765 55554421 10001111 11111222111110000 000011223333
Q ss_pred ecCcccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 183 AIPDADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
.|+|. +.++..|++-+.|+++|+||+....
T Consensus 153 ~WhP~---s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 153 RWHPW---SESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEcCC---CCCCCeEEEEecCCEEEEEecCCCC
Confidence 34432 2257889999999999999998644
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.77 E-value=1.7 Score=40.67 Aligned_cols=115 Identities=9% Similarity=0.059 Sum_probs=70.9
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCC--------eEEEEEec----------------CCCEEEEEeCCCeEE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP--------VTSLCFKS----------------GNEDIIYVSSGKEVK 83 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~dg~i~ 83 (349)
+..|+.++.++.|.-.|..+++.+..+...... ...+++.. .+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 356777788899999999999998887643211 12233321 345788888999999
Q ss_pred EEEccCCCcccceee-----cc----CcccceEEEEEcc--CCCEEEEEcC----------CCcEEEEEcCCceEeceec
Q 018858 84 SFDVHMPASWRPLES-----YN----YNKEEINQIVCNP--KSSFLACADD----------GGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 84 iwd~~~~~~~~~~~~-----~~----~~~~~v~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~ 142 (349)
-.|.++++....+.. +. .....-..+.-.| .+..+++|+. +|.|+-+|.++|+.+..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 999988864432211 00 0000000111112 1345666642 6889999999999988876
No 408
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.74 E-value=0.66 Score=40.02 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=72.8
Q ss_pred CceEE-EeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC-------EEEEEeCCCeEEEEEccCCCcccceeec
Q 018858 28 PGFVA-SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-------DIIYVSSGKEVKSFDVHMPASWRPLESY 99 (349)
Q Consensus 28 ~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 99 (349)
.++++ .|+....++--|++.|+.+..+..|... -+.|.|..+ .-++|-.+..|.-.|.+-..........
T Consensus 479 ssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 479 SSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred cceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 44544 5566677888899999999888877765 466777432 1233444555555565532111111111
Q ss_pred cCcccceEEEEEc----cCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 100 NYNKEEINQIVCN----PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 100 ~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+..++--.|+ -.+.++|+++..|.|++||--.-.....++ +....|..+..+.
T Consensus 557 ---KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta 613 (776)
T COG5167 557 ---KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTA 613 (776)
T ss_pred ---hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeec
Confidence 1222222222 234689999999999999954433334445 6667788888777
No 409
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.84 Score=41.31 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=41.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEE--e--ecCCCCeEEEEEecCCCEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--T--DVGNGPVTSLCFKSGNEDII 74 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~ 74 (349)
+|.++.++--...++..+.|+.+ .-|+.-..+|++++|++.. +.+.. . ......|..+.+..+|-.+.
T Consensus 72 sG~lL~~~~w~~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavl 143 (829)
T KOG2280|consen 72 SGQLLGRILWKHGELIGMGWSDD--EELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVL 143 (829)
T ss_pred cccchHHHHhcCCCeeeecccCC--ceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCceEEE
Confidence 44555555544457778999976 5677778999999999753 22222 1 22334466666665553333
No 410
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.61 E-value=1.4 Score=38.30 Aligned_cols=69 Identities=7% Similarity=0.105 Sum_probs=43.2
Q ss_pred EEEEecCCCEEEEEe-CCC----eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC-----------c
Q 018858 63 SLCFKSGNEDIIYVS-SGK----EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-----------D 126 (349)
Q Consensus 63 ~~~~~~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~ 126 (349)
...++|+++++|.+- ..| .++++|+++++.... .+. ......+.|.++++.|+....+. .
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 577899999988663 333 699999998743321 221 11223499999987765443222 3
Q ss_pred EEEEEcCCc
Q 018858 127 VKIIDIRQH 135 (349)
Q Consensus 127 i~i~d~~~~ 135 (349)
|+.|.+.+.
T Consensus 204 v~~~~~gt~ 212 (414)
T PF02897_consen 204 VYRHKLGTP 212 (414)
T ss_dssp EEEEETTS-
T ss_pred EEEEECCCC
Confidence 777777654
No 411
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.56 E-value=1.9 Score=39.57 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=25.4
Q ss_pred CCcceEEEEEeeec--CCcc-EEEEeeCCCeEEEEecC
Q 018858 263 HTAAASCVAFSMFG--ERGK-YLISGGNDKLVKVWDCS 297 (349)
Q Consensus 263 h~~~i~~i~~~~~~--~~~~-~l~s~~~d~~i~vwd~~ 297 (349)
|...|-+|.|.+.. ++|. +|++++-.|.+.+|++.
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 55678899998532 2232 78888889999998883
No 412
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.53 E-value=0.72 Score=41.61 Aligned_cols=103 Identities=13% Similarity=0.233 Sum_probs=66.6
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEee-cCCCCeEEEEEe--cCCCEEEEEeCCCeEEEEEcc------CCCcccceee
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFK--SGNEDIIYVSSGKEVKSFDVH------MPASWRPLES 98 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~~~ 98 (349)
++..+.-+....+.|||...+.....-. .....|..+.|. |+++.+++.+..+.|.++.-. .+.....+..
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 3444444445679999998877533222 346789999984 689999999999999998532 1111222222
Q ss_pred c--cCcc-cceEEEEEccCCCEEEEEcCCCcEEEEEc
Q 018858 99 Y--NYNK-EEINQIVCNPKSSFLACADDGGDVKIIDI 132 (349)
Q Consensus 99 ~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 132 (349)
+ ..+. .+|.+..|.++|.+++.++ ..+.|+|-
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 1222 5688999999887666543 36888874
No 413
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.52 Score=40.00 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=58.7
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 272 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~ 272 (349)
|++.+|+--.+..|.+++....+.. .....+-+.....|....|
T Consensus 77 DnkilAVQR~~~~v~f~nf~~d~~~------------------------------------l~~~~~ck~k~~~IlGF~W 120 (657)
T KOG2377|consen 77 DNKILAVQRTSKTVDFCNFIPDNSQ------------------------------------LEYTQECKTKNANILGFCW 120 (657)
T ss_pred CcceEEEEecCceEEEEecCCCchh------------------------------------hHHHHHhccCcceeEEEEE
Confidence 8999999999999999988532100 0111122223446888888
Q ss_pred eeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEE
Q 018858 273 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 335 (349)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 335 (349)
+ +..-+|-.+..| +-+|-+...+ +.+.....|+-.|++..|++ +-+.++
T Consensus 121 ~----~s~e~A~i~~~G-~e~y~v~pek--------rslRlVks~~~nvnWy~yc~-et~v~L 169 (657)
T KOG2377|consen 121 T----SSTEIAFITDQG-IEFYQVLPEK--------RSLRLVKSHNLNVNWYMYCP-ETAVIL 169 (657)
T ss_pred e----cCeeEEEEecCC-eEEEEEchhh--------hhhhhhhhcccCccEEEEcc-ccceEe
Confidence 7 445566555444 6677665543 45556677888899999987 444433
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=95.27 E-value=1.5 Score=36.71 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=71.0
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEE-EECCCCcEEEEe-ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICW-FDLRSKDVQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~v-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
...+.++.+.|+ +.+++++. .|.+.. ++ ..++.-... ......++++.+.++++.++++ ..|.+.+=....+..
T Consensus 172 ~g~~~~i~~~~~-g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPD-GKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCC-CeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 356888888887 66665554 455543 22 222222122 2334678899999988876654 467664322333433
Q ss_pred ccceeec-cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec--cccccceeEEEEcc
Q 018858 93 WRPLESY-NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIP 156 (349)
Q Consensus 93 ~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~ 156 (349)
...+... ......+..+.+.+++..++++ .+|.+. .....++.-...+ .......+.+.|..
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~ 312 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD 312 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC
Confidence 3322211 0012357788898877755554 566554 3334443322222 01223456666655
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.19 E-value=1.4 Score=38.88 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=76.8
Q ss_pred CCeEEEEEecCCCEE-EEEe--CCCeEEEEEccCCCcccceeeccCcccceEEEEEccC----CCEEEEEcCCCcEEEEE
Q 018858 59 GPVTSLCFKSGNEDI-IYVS--SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK----SSFLACADDGGDVKIID 131 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l-~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~i~d 131 (349)
.++..++|. ||+.+ ++.- .+|.++.=| ...+..+ +.|..+.|.|- ...+++.-..+.|.+|.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd------s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD------SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC------ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 478899997 45544 3332 233333211 1233333 56899999885 22444445567899999
Q ss_pred cCC-----ceEece----eccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC
Q 018858 132 IRQ-----HCLYKS----LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 202 (349)
Q Consensus 132 ~~~-----~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (349)
+.. .+.+.. +.....--...+.|+| ....|++-..
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP------------------------------------k~~iL~VLT~ 132 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP------------------------------------KKAILTVLTA 132 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccC------------------------------------CCceEEEEec
Confidence 861 222111 1101111234566777 6677777666
Q ss_pred CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 203 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 203 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
...-.+++.+...............|.+.+|.+||..+++
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence 5555566766544333333345567777888888877764
No 416
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.10 E-value=1.5 Score=35.85 Aligned_cols=99 Identities=15% Similarity=0.276 Sum_probs=50.7
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEc-
Q 018858 54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI- 132 (349)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~- 132 (349)
.....+.+..+.-+++|++++++.....+.-||--.. ...+.... ....+..+.|.|++.+.+.+ +.|.|+.=+.
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~--~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRN--SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccC--ccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 3445577888888999999988887666677775421 12222222 24679999999998766654 7788887762
Q ss_pred CCceEece--ecc-ccccceeEEEEcc
Q 018858 133 RQHCLYKS--LRA-GHSSICSSVQFIP 156 (349)
Q Consensus 133 ~~~~~~~~--~~~-~~~~~v~~~~~~~ 156 (349)
...+.... ... .....+..++|.+
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRP 242 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESS
T ss_pred CCccccccccCCcccCceeeEEEEecC
Confidence 22222111 110 1233467788877
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.00 E-value=0.14 Score=27.48 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=25.7
Q ss_pred cceEEEEEccCC---CEEEEEcCCCcEEEEEcCC
Q 018858 104 EEINQIVCNPKS---SFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 104 ~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~ 134 (349)
+.+.++.|+|.. .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 5888888889999999985
No 418
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.97 E-value=0.2 Score=38.87 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=45.9
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceecccc-cceeeecc----ccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQTSIN-NDLLIKNI----NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.++.+|++...+|.+++||+.+.+....... .+++.... .....|..+.+.. +|.-+++- .+|..+.|+.
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~l-sng~~y~y~~ 94 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTL-SNGDSYSYSP 94 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEE-eCCCEEEecc
Confidence 4678999999999999999999865432210 11111100 3556788888864 77655554 4578888875
No 419
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=0.68 Score=43.94 Aligned_cols=64 Identities=27% Similarity=0.227 Sum_probs=40.7
Q ss_pred CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEe
Q 018858 264 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
....+++.|+ |.|+.++.|-..|++.-|...-... . .+-.....-...|.+++|-... .++++-
T Consensus 198 t~~~Tav~WS---prGKQl~iG~nnGt~vQy~P~leik-~-----~ip~Pp~~e~yrvl~v~Wl~t~-eflvvy 261 (1405)
T KOG3630|consen 198 TNSQTAVLWS---PRGKQLFIGRNNGTEVQYEPSLEIK-S-----EIPEPPVEENYRVLSVTWLSTQ-EFLVVY 261 (1405)
T ss_pred ccceeeEEec---cccceeeEecCCCeEEEeeccccee-e-----cccCCCcCCCcceeEEEEecce-eEEEEe
Confidence 3467899999 8999999999999998886544210 0 0000011125688999997633 344443
No 420
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=1.3 Score=33.49 Aligned_cols=79 Identities=6% Similarity=-0.117 Sum_probs=41.1
Q ss_pred CCCEEEEEeCC--CeEEEEEccCCCcccceeec--cCcccceEEEEEccCCCEEE-EEcCCCcEEEEEcCCceEeceecc
Q 018858 69 GNEDIIYVSSG--KEVKSFDVHMPASWRPLESY--NYNKEEINQIVCNPKSSFLA-CADDGGDVKIIDIRQHCLYKSLRA 143 (349)
Q Consensus 69 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~ 143 (349)
+|.++.+.+.- ..|++||+.+++.......- ......++. -++.+. ..=.+|.-..+|.++-+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~- 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFS- 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhhhhcccc-
Confidence 45666665543 47999999987543322211 001112221 122222 22356778888888877777665
Q ss_pred ccccceeEEEE
Q 018858 144 GHSSICSSVQF 154 (349)
Q Consensus 144 ~~~~~v~~~~~ 154 (349)
.++.=..++.
T Consensus 129 -y~GeGWgLt~ 138 (262)
T COG3823 129 -YEGEGWGLTS 138 (262)
T ss_pred -cCCcceeeec
Confidence 3333344443
No 421
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.72 E-value=2.5 Score=36.41 Aligned_cols=70 Identities=16% Similarity=0.273 Sum_probs=40.9
Q ss_pred eEEEEEeeecC-C-ccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEE
Q 018858 267 ASCVAFSMFGE-R-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 267 i~~i~~~~~~~-~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 344 (349)
...+.+-||+. . ..++..=+.||.+.+|+-+.. ........---.--+++.+ .-+.+++++.+..+.
T Consensus 131 a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~----------~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~ 199 (418)
T PF14727_consen 131 AYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF----------AFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLE 199 (418)
T ss_pred eeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE----------EEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEE
Confidence 44555555432 2 357788899999999998774 2222222111122234555 334688888887777
Q ss_pred Eee
Q 018858 345 VYS 347 (349)
Q Consensus 345 iw~ 347 (349)
-|+
T Consensus 200 ~Yk 202 (418)
T PF14727_consen 200 CYK 202 (418)
T ss_pred Eec
Confidence 664
No 422
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.63 E-value=2.5 Score=36.11 Aligned_cols=116 Identities=15% Similarity=0.166 Sum_probs=58.7
Q ss_pred eeEEEEecCCCceEEEeCC--------------------CCcEEEEECCCCcEEEEeecCCC--CeEEEEEe--cCCCE-
Q 018858 18 ATCCIASRDRPGFVASSGE--------------------DGCICWFDLRSKDVQLVTDVGNG--PVTSLCFK--SGNED- 72 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~--------------------dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~- 72 (349)
-..+-+.|. .+.++|+.. ..++.+||+.+.+.++++..... .+..+.|. |+..+
T Consensus 183 gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g 261 (461)
T PF05694_consen 183 GYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG 261 (461)
T ss_dssp ---EEEETT-TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred CCCeEEcCC-CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence 345556676 567776542 35799999999999999886543 34566664 44444
Q ss_pred EEEEeCCCeEEEEEc-cCCCccc---ceee----------------ccCcccceEEEEEccCCCEEEEEc-CCCcEEEEE
Q 018858 73 IIYVSSGKEVKSFDV-HMPASWR---PLES----------------YNYNKEEINQIVCNPKSSFLACAD-DGGDVKIID 131 (349)
Q Consensus 73 l~~~~~dg~i~iwd~-~~~~~~~---~~~~----------------~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d 131 (349)
++.+.-..+|..|-- +.++ .. .+.. +..-..-++.+.++.|.++|..++ ..|.|+.||
T Consensus 262 Fvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYD 340 (461)
T PF05694_consen 262 FVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYD 340 (461)
T ss_dssp EEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE
T ss_pred EEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEe
Confidence 333334455555533 2221 11 1110 101124578999999999997666 589999999
Q ss_pred cCCc
Q 018858 132 IRQH 135 (349)
Q Consensus 132 ~~~~ 135 (349)
+...
T Consensus 341 ISDP 344 (461)
T PF05694_consen 341 ISDP 344 (461)
T ss_dssp -SST
T ss_pred cCCC
Confidence 9853
No 423
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.53 E-value=0.82 Score=39.15 Aligned_cols=87 Identities=17% Similarity=0.128 Sum_probs=55.7
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC-----------------CC
Q 018858 54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-----------------SS 116 (349)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~ 116 (349)
+......+.+++.+|.+++.|+...-|.|.++|+.++...+..+.+.. ..+.-+..... ..
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd--Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD--AQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc--ceEEEEEeecccccccccccccCCCCcceE
Confidence 344456688999999988777766669999999998755554444321 11111111111 11
Q ss_pred EE-EEEcCCCcEEEEEcCCceEeceec
Q 018858 117 FL-ACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 117 ~l-~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
+| +-+-..|.|.||+++++..+..+.
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 23 345678999999999887776665
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.50 E-value=2.7 Score=35.83 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=55.3
Q ss_pred eeeEEEEecCCCceEEEeC-----------CCC-cEEEEECCC--CcE--EEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 17 TATCCIASRDRPGFVASSG-----------EDG-CICWFDLRS--KDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~-----------~dg-~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
....|+|.++ ++++++-. ..+ .|.+++-.+ ++. ...+...-.....+++.+++ |+++....
T Consensus 15 ~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899998 77766642 223 677776542 332 23333334456789998888 44444443
Q ss_pred eEEEE-EccCC-----CcccceeeccCc----ccceEEEEEccCCCEEEEEc
Q 018858 81 EVKSF-DVHMP-----ASWRPLESYNYN----KEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 81 ~i~iw-d~~~~-----~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~ 122 (349)
|..+ |.... +....+..+... ......++|.|+|.+.++-+
T Consensus 92 -i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 -ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4433 44311 111122223221 23467899999987665444
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.49 E-value=2.7 Score=35.81 Aligned_cols=71 Identities=7% Similarity=0.083 Sum_probs=37.7
Q ss_pred CCeEEEEEecCCCEEEEEe-----------CCC-eEEEEEccCCC-cccceeeccCcccceEEEEEccCCCEEEEEcCCC
Q 018858 59 GPVTSLCFKSGNEDIIYVS-----------SGK-EVKSFDVHMPA-SWRPLESYNYNKEEINQIVCNPKSSFLACADDGG 125 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (349)
.....|+|.++|+.+++-. ..+ .|.+++-.++. .......+.........+++.+++ .++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-
Confidence 3456788888888766542 223 67777543221 111122222222456788998888 444 4444
Q ss_pred cEEEE-Ec
Q 018858 126 DVKII-DI 132 (349)
Q Consensus 126 ~i~i~-d~ 132 (349)
.|..+ |.
T Consensus 91 ~i~~~~d~ 98 (367)
T TIGR02604 91 DILFLRDK 98 (367)
T ss_pred eEEEEeCC
Confidence 34434 44
No 426
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.47 E-value=0.049 Score=49.71 Aligned_cols=129 Identities=12% Similarity=0.152 Sum_probs=76.8
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC--CCcEEE-----EeecCCCCeEEEEEec---CCCEEEEEeCCC
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQL-----VTDVGNGPVTSLCFKS---GNEDIIYVSSGK 80 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~--~~~~~~-----~~~~~~~~v~~~~~~~---~~~~l~~~~~dg 80 (349)
+++..+.|-.+.|...+...+. -.-|.+.|||++ .|+... ....-...+.-+.|.| +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4566677777777543233333 333778999875 344322 2222234445555654 566777777788
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEE-----------EEccCCCEEEEEcCCCcEEEEEcC-----CceEeceeccc
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQI-----------VCNPKSSFLACADDGGDVKIIDIR-----QHCLYKSLRAG 144 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~ 144 (349)
.+++..+.+... ..+..|...+..+ ..+|||..|+.++.||.++.|.+. ...++...+ .
T Consensus 206 ~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk-p 280 (1283)
T KOG1916|consen 206 EIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK-P 280 (1283)
T ss_pred ceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC-C
Confidence 888887764211 2223344433332 368999999999999998888764 334455555 5
Q ss_pred cc
Q 018858 145 HS 146 (349)
Q Consensus 145 ~~ 146 (349)
|.
T Consensus 281 hd 282 (1283)
T KOG1916|consen 281 HD 282 (1283)
T ss_pred CC
Confidence 55
No 427
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.47 E-value=2 Score=34.26 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=56.4
Q ss_pred EEEEEecCCC-EEEEEeCCC-eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-----CCcEEEEEcCC
Q 018858 62 TSLCFKSGNE-DIIYVSSGK-EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIRQ 134 (349)
Q Consensus 62 ~~~~~~~~~~-~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~ 134 (349)
..++++|.-. -++.+-.-| ...++|....+....+..... ....-.=.|+|+|.+|...-. .|.|-|||.+.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-ceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 4566777433 345554444 356788876654443332211 111222468999999876543 37799999984
Q ss_pred c-eEeceeccccccceeEEEEcc
Q 018858 135 H-CLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 135 ~-~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+ +.+.++. .|.-....+.+.+
T Consensus 150 ~fqrvgE~~-t~GiGpHev~lm~ 171 (366)
T COG3490 150 GFQRVGEFS-THGIGPHEVTLMA 171 (366)
T ss_pred ccceecccc-cCCcCcceeEEec
Confidence 3 4456666 6776777888888
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.15 E-value=2.5 Score=34.16 Aligned_cols=116 Identities=11% Similarity=0.178 Sum_probs=65.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECC------CC-cEEEEeec-----CCCCeEEEEEecCCC------------E
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLR------SK-DVQLVTDV-----GNGPVTSLCFKSGNE------------D 72 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~ 72 (349)
.-+.|+++|. +.+-++....+...+||.. .. .++.++.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 4578999997 6666666667889999986 12 23344442 124567777764332 3
Q ss_pred EEEEeCCCeEEEEEccCCCcc--cceeeccC-cccce-EEEEEcc--CCCEEEEE-cCCCcEEEEEcC
Q 018858 73 IIYVSSGKEVKSFDVHMPASW--RPLESYNY-NKEEI-NQIVCNP--KSSFLACA-DDGGDVKIIDIR 133 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~-~~~~v-~~~~~~~--~~~~l~~~-~~dg~i~i~d~~ 133 (349)
++.+++||+|.-|...-.... .....+.. ....| ..+++.. .+.+|..+ -..+.|.+||-.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 677889999999985432210 11111111 11222 3455543 24455433 356778888743
No 429
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.15 E-value=0.54 Score=36.53 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=46.3
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCcccce----eecc-------CcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 66 FKSGNEDIIYVSSGKEVKSFDVHMPASWRPL----ESYN-------YNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 66 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
+..+++++++.+.+|.+++||+.+++....- ..+. .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4456889999999999999999986432211 1111 2345678888888887666554 4778888865
No 430
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.11 E-value=1.7 Score=33.13 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=63.1
Q ss_pred ceEEEeCCCCcEEEEECC--CCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---C---eEEEE-EccCC----Cccc-
Q 018858 29 GFVASSGEDGCICWFDLR--SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---K---EVKSF-DVHMP----ASWR- 94 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw-d~~~~----~~~~- 94 (349)
+.|+.+...+.|.+|++. ..+.+.++.. -+.|..+.++..|++|++--.+ . .+++| +++.. ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 444444555789999988 3345666663 3789999999999999986432 2 56665 33221 0000
Q ss_pred -----------------cee--eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc
Q 018858 95 -----------------PLE--SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH 135 (349)
Q Consensus 95 -----------------~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 135 (349)
.+. .++. ...+.+++..|-..-|+.|+. +.+.+|.++..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence 000 1111 246778888886555666665 47889987643
No 431
>PRK10115 protease 2; Provisional
Probab=94.09 E-value=5.1 Score=37.41 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=64.0
Q ss_pred eeeeEEEEecCCCceEEEeC-----CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC------CeEEE
Q 018858 16 ATATCCIASRDRPGFVASSG-----EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG------KEVKS 84 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~-----~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i 84 (349)
-.+..+.++|+ +++|+.+. ....|++-|+.+++.+...-.... ..++|.++++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spd-g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPD-NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCC-CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34677888998 77766432 234588899988764322111111 458999999887776542 36777
Q ss_pred EEccCCCc-ccceeeccCcccceE-EEEEccCCCEEEEEcC---CCcEEEEEc
Q 018858 85 FDVHMPAS-WRPLESYNYNKEEIN-QIVCNPKSSFLACADD---GGDVKIIDI 132 (349)
Q Consensus 85 wd~~~~~~-~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~i~d~ 132 (349)
+++.++.. ...+.. ....... ....+.++++++..+. ++.+.+++.
T Consensus 204 h~lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88877621 122222 1112222 2233447776654433 456888885
No 432
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=1.1 Score=43.29 Aligned_cols=93 Identities=11% Similarity=0.129 Sum_probs=54.9
Q ss_pred CCCCcEEEEECCCCcEEEEeecCCCCeEEEEE--------ecCCCEEEEEeCCCeEEEEEccCCCcccceeec------c
Q 018858 35 GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCF--------KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY------N 100 (349)
Q Consensus 35 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~ 100 (349)
+.|..+.+|+++++.....+.+-...|..+.. -|.=++++....--.|.++-+...+.......+ .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 44788999999997777777776666666654 233355555555666777755422111111111 1
Q ss_pred CcccceEEEEEccCCCEEEEEcCCCcEE
Q 018858 101 YNKEEINQIVCNPKSSFLACADDGGDVK 128 (349)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (349)
.....|.++....+|+.|++| .||.|+
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~ly 202 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLY 202 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEE
Confidence 123467888877778766665 555443
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=2.2 Score=36.46 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=57.4
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe----
Q 018858 63 SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY---- 138 (349)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---- 138 (349)
.+-|.. .+..+.+...|.+.-|.+.-...-.++..-...+++|.++.|++|.+.+|+--.+..|.+++....+..
T Consensus 27 gvFfDD-aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDD-ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeecc-CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 344443 333444444566677766543322233332334579999999999999999999999999998533322
Q ss_pred ceeccccccceeEEEEcc
Q 018858 139 KSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~ 156 (349)
.+.+ .....|....|..
T Consensus 106 ~~ck-~k~~~IlGF~W~~ 122 (657)
T KOG2377|consen 106 QECK-TKNANILGFCWTS 122 (657)
T ss_pred HHhc-cCcceeEEEEEec
Confidence 2223 2344578888876
No 434
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.91 E-value=0.01 Score=50.05 Aligned_cols=129 Identities=11% Similarity=0.138 Sum_probs=87.7
Q ss_pred EEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcccceeec
Q 018858 21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESY 99 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 99 (349)
..|-|.+.+ ++.++.+..+..||-. ++...... ..+....++|..+++.++.. -..+.+.+||+.+... ..+..-
T Consensus 40 ~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~g 115 (615)
T KOG2247|consen 40 HRWRPEGHN-LAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESG 115 (615)
T ss_pred eeEecCCCc-eehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhcc
Confidence 467787444 7777778888888854 33333333 34556678898888876554 4568999999985321 112111
Q ss_pred cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 100 NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
..+ .-.-+.|++....++.+...|.+.+++..+.+.+...- .|...+.++++.+
T Consensus 116 g~~--s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~l 169 (615)
T KOG2247|consen 116 GTS--SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTL 169 (615)
T ss_pred Ccc--hHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecc
Confidence 111 12227888888899999999999999988766555544 4888899999988
No 435
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.80 E-value=2.9 Score=33.59 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=66.4
Q ss_pred CceEEEeCCCCcEEEEECCCCc---EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCccc
Q 018858 28 PGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKE 104 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 104 (349)
|++...+..|.-+.+.|+.+.+ +..........-..++.| |++-..+..|+-+.+-|+........+.... ...
T Consensus 138 Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~ 214 (370)
T COG5276 138 GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGP 214 (370)
T ss_pred CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCC
Confidence 6677777756666777876543 233444444444566666 7777778889999999999766555444433 123
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 105 EINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
.+..+..+++-.+++...+ -+.+-|..+.+
T Consensus 215 g~~sv~vsdnr~y~vvy~e--gvlivd~s~~s 244 (370)
T COG5276 215 GTYSVSVSDNRAYLVVYDE--GVLIVDVSGPS 244 (370)
T ss_pred ceEEEEecCCeeEEEEccc--ceEEEecCCCC
Confidence 6777777776666665443 47777776554
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.76 E-value=1.7 Score=37.64 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=39.0
Q ss_pred CccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 278 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 278 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
...|+|.+|..|.|++||.-.. +....+.+....|..+.... +|+++++.+..
T Consensus 572 esGyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta-~Gk~ilaTCk~ 624 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTA-NGKHILATCKN 624 (776)
T ss_pred cCceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeec-CCcEEEEeecc
Confidence 4569999999999999997653 33335566778888888876 77776665543
No 437
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.57 E-value=0.0092 Score=50.29 Aligned_cols=142 Identities=17% Similarity=0.212 Sum_probs=92.1
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
.-...|-|.+..++.++.+-.+..||- .++...... ..+....++|..
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n--~tg~aldm~wDk----------------------------- 84 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN--PTGKALDMAWDK----------------------------- 84 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC--CchhHhhhhhcc-----------------------------
Confidence 344677888877888888888999984 344433333 345566677766
Q ss_pred cccccCCCCcE-EEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC-C
Q 018858 186 DADMLDKTNKI-CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-H 263 (349)
Q Consensus 186 ~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h 263 (349)
++.. ++.+-..+.+.+||+.+... .++ .+.+ |
T Consensus 85 -------egdvlavlAek~~piylwd~n~eyt-------------------------------------qqL--E~gg~~ 118 (615)
T KOG2247|consen 85 -------EGDVLAVLAEKTGPIYLWDVNSEYT-------------------------------------QQL--ESGGTS 118 (615)
T ss_pred -------ccchhhhhhhcCCCeeechhhhhhH-------------------------------------HHH--hccCcc
Confidence 3443 44566788999999986310 000 1111 2
Q ss_pred CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCC
Q 018858 264 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK 341 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 341 (349)
.... +.|+ +....++.+-..|.+.|++.... +.+.....|..+++++++.+.+ +.+.++.|.
T Consensus 119 s~sl--l~ws---Kg~~el~ig~~~gn~viynhgts---------R~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~ 180 (615)
T KOG2247|consen 119 SKSL--LAWS---KGTPELVIGNNAGNIVIYNHGTS---------RRIIVMGKHQRRGTQIAVTLED--YVILCDCDN 180 (615)
T ss_pred hHHH--Hhhc---cCCccccccccccceEEEeccch---------hhhhhhcccccceeEEEecccc--eeeecCcHH
Confidence 2222 6677 77788888888899999998875 3333444488899999997743 566666554
No 438
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.45 E-value=7.1 Score=36.98 Aligned_cols=118 Identities=10% Similarity=-0.044 Sum_probs=65.9
Q ss_pred ceeeeEEEEecC--CCc---eEEEeCCCCcEEEE-ECCCCcEEEEe--ec--CCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 15 KATATCCIASRD--RPG---FVASSGEDGCICWF-DLRSKDVQLVT--DV--GNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 15 ~~~i~~~~~~~~--~~~---~l~t~~~dg~i~vw-d~~~~~~~~~~--~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
...|.|+.++|- +.+ +++.|..+..+.+- -..+...+... .+ -...|....+-.+..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 467999999974 233 78888776555433 33333333222 11 1234555556666889999999998877
Q ss_pred EEcc--CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 85 FDVH--MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 85 wd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
+.+. ++......+. .-...++.--.|+..++.-+.+..|.-..+|.-+
T Consensus 610 fv~d~~tg~lsd~Kk~-~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKV-TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred EEEEcccceEcccccc-ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence 6554 3322111111 1123455555666655544445556666666643
No 439
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.45 E-value=7 Score=36.87 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=43.7
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeE-------------EEEEec--CCCEEEEEeC----------CCeE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVT-------------SLCFKS--GNEDIIYVSS----------GKEV 82 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i 82 (349)
+..++.++.|+.+.-.|.++|+.+..+.. ++.|. .+.-.| .+..+++++. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 34788888899999999999999876642 11110 011112 2345666642 5889
Q ss_pred EEEEccCCCcccce
Q 018858 83 KSFDVHMPASWRPL 96 (349)
Q Consensus 83 ~iwd~~~~~~~~~~ 96 (349)
+-+|.++++..-..
T Consensus 339 ~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 339 RAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCcEeeEE
Confidence 99999998755433
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.37 E-value=1.7 Score=39.75 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=69.0
Q ss_pred CceEEEeCCCCcEEEEECCC-------C----c---------EEEEeecCCCCeEEEEEe--cCCCEEEEEeCCCeEEEE
Q 018858 28 PGFVASSGEDGCICWFDLRS-------K----D---------VQLVTDVGNGPVTSLCFK--SGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iw 85 (349)
...|+.+..||.|.+|..++ . + +...+. -...+.+++++ ...++||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 56888999999999997531 1 0 111222 23578899998 778888888888888888
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCC---C---EEEEEcCCCcEEEEEc
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKS---S---FLACADDGGDVKIIDI 132 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 132 (349)
-+...........-..+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 665421111111111144568888887643 2 7778888999999887
No 441
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.27 E-value=0.44 Score=40.35 Aligned_cols=169 Identities=14% Similarity=0.114 Sum_probs=95.3
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE-EEe-ecCCC----CeE-EEEEecCCCEEEEEe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-LVT-DVGNG----PVT-SLCFKSGNEDIIYVS 77 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~l~~~~ 77 (349)
.+.++.|..-..+|..+...|+ ++.++.-+. .++.++++.+.... ..+ ....+ .|+ .+..-..|..++++.
T Consensus 210 ~e~i~~L~~~~~~v~qllL~Pd-g~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~ 287 (733)
T COG4590 210 QEIIRLLSVPFSDVSQLLLTPD-GKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH 287 (733)
T ss_pred hhhhhhcCCCccchHhhEECCC-CCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc
Confidence 3445556666678888889998 787776554 57888988765431 111 11111 122 122233566788889
Q ss_pred CCCeEEEE-EccCCCcc--cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEE
Q 018858 78 SGKEVKSF-DVHMPASW--RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 78 ~dg~i~iw-d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
.||.|.-| |++.+... ..+..++-...++..+.-..+.+-+++-+.+|++.++.-...+.+-.-. --..+.-+++
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~~~~ 365 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQLVAM 365 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh--hhcCcceeee
Confidence 99988877 66543221 1112222112233333322233567777788888887654433322211 2224566778
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
+| ++.++++- ..|.++++.+++.
T Consensus 366 Sp------------------------------------~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 366 SP------------------------------------NQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred Cc------------------------------------ccchheee-cCCceEEEEecCC
Confidence 88 67777654 4577888888764
No 442
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.88 E-value=4 Score=32.51 Aligned_cols=237 Identities=9% Similarity=0.034 Sum_probs=125.5
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
..++-.|| |..-+++...+.|--.|..+++....--+.......+..-|++..-++-+.. .|.-.|-++.+. ..+..
T Consensus 65 ~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f~l 141 (353)
T COG4257 65 FDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRFPL 141 (353)
T ss_pred cccccCCC-CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEeec
Confidence 44566676 7777777777777777888888655444455556677778887765553332 344445444321 11111
Q ss_pred -ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCc
Q 018858 99 -YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPA 177 (349)
Q Consensus 99 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (349)
............|.+.|++-+++.. |.---.|-. ...++.+........+.|+..|
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atp--------------------- 198 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATP--------------------- 198 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECC---------------------
Confidence 1122345677888898888877653 211111111 1122333322334456677777
Q ss_pred eeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-CCCccceeeeeccccEEEEeeeee---ecCc-e
Q 018858 178 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSKVNIRDAEMEILD---QSGG-K 252 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~ 252 (349)
+|..-++.-.+..|-..|...+......... .....+.+--+|.|+..++....- .... .
T Consensus 199 ---------------dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 199 ---------------DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ---------------CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 6776666556666766676655322222222 234455566666776666421110 0000 0
Q ss_pred eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 253 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 253 ~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
..-....+.+.+..-.++.+. ..++.-.+--.-|.|.-+|-++.
T Consensus 264 ~sW~eypLPgs~arpys~rVD---~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 264 TSWIEYPLPGSKARPYSMRVD---RHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred ccceeeeCCCCCCCcceeeec---cCCcEEeeccccCceeecCcccc
Confidence 111223455555556677766 55555554444566666776663
No 443
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.48 E-value=0.89 Score=41.12 Aligned_cols=75 Identities=8% Similarity=0.183 Sum_probs=45.6
Q ss_pred cCCCEEEEEeCCCeEEEEEccC----CCcccc-----------eeec--------cCcccceEEEEEcc----CCCEEEE
Q 018858 68 SGNEDIIYVSSGKEVKSFDVHM----PASWRP-----------LESY--------NYNKEEINQIVCNP----KSSFLAC 120 (349)
Q Consensus 68 ~~~~~l~~~~~dg~i~iwd~~~----~~~~~~-----------~~~~--------~~~~~~v~~~~~~~----~~~~l~~ 120 (349)
++...++.+..||.+....... +..... +..+ ......+..++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677888888999888877664 110000 0000 00123345566655 6689999
Q ss_pred EcCCCcEEEEEcCCceEeceec
Q 018858 121 ADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 121 ~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.+.|+.+|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977664
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=92.47 E-value=7.4 Score=34.61 Aligned_cols=64 Identities=8% Similarity=0.021 Sum_probs=31.8
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC--CcEEEEEcCCc
Q 018858 69 GNEDIIYVSSG-----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG--GDVKIIDIRQH 135 (349)
Q Consensus 69 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~ 135 (349)
++..++.|+.+ ..+..||..++. ...+............+. -++...+.|+.+ ..+..||..++
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~-W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n 341 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNN-WIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDA 341 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCE-EEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCC
Confidence 34555666654 256778877642 222222221111122222 356677777754 34667776543
No 445
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.44 E-value=6.1 Score=33.51 Aligned_cols=144 Identities=11% Similarity=0.147 Sum_probs=81.0
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEe----cCCCE--EEEEeC-C---CeEEEEEccCCC-cccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK----SGNED--IIYVSS-G---KEVKSFDVHMPA-SWRPL 96 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~~-d---g~i~iwd~~~~~-~~~~~ 96 (349)
..+++....++-+.+||++ |+.++.+.. +.+..+..- -.++. |+.++. + ..|++|.+.... ....+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 4577777888999999987 555666642 344444331 23443 455542 2 479999876311 11111
Q ss_pred ee----ccCcccceEEEEE--cc-CCC-EEEEEcCCCcEEEEEcC---Cc----eEeceeccccccceeEEEEccCCCCC
Q 018858 97 ES----YNYNKEEINQIVC--NP-KSS-FLACADDGGDVKIIDIR---QH----CLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 97 ~~----~~~~~~~v~~~~~--~~-~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
.. +......+..+++ ++ ++. +++....+|.+..|.+. .+ +.+++|. -...+..+....
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDD----- 217 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDD----- 217 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEET-----
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEec-----
Confidence 11 0011134566666 34 344 55567788988888775 22 4566666 344677777766
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
....|..+-++.-|.-|+.+
T Consensus 218 -------------------------------e~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 218 -------------------------------ETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp -------------------------------TTTEEEEEETTTEEEEEESS
T ss_pred -------------------------------ccCCEEEecCccEEEEEecC
Confidence 56788888888877777776
No 446
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.43 E-value=6 Score=33.46 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=48.3
Q ss_pred ECCCCcEEEEeecCCCCeEE-----EEEecCCCEEEEEeC-CC--eEEEEEccCCCcccceeeccCcccceEEEEEccCC
Q 018858 44 DLRSKDVQLVTDVGNGPVTS-----LCFKSGNEDIIYVSS-GK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 44 d~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
|..+|-.+..+......... =+|.++|+.|+.++. +| .+.+.|+.+++.. .+....+ .......++|++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g--~~~~g~~~s~~~ 92 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPG--DNTFGGFLSPDD 92 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE-E---SS---B-TTT-EE-TTS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEE-ECccCCC--CCccceEEecCC
Confidence 45566655555433322222 246788987766654 44 6777788875422 2222111 112235567888
Q ss_pred CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 116 SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 116 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
+.++-......|+-.|+++.+....+. .....+-...|.
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~-~p~~~~g~gt~v 131 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYE-VPDDWKGYGTWV 131 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE---TTEEEEEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEE-CCccccccccee
Confidence 777655455688999999876544444 333333334443
No 447
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.38 E-value=4.2 Score=31.54 Aligned_cols=102 Identities=11% Similarity=-0.067 Sum_probs=51.6
Q ss_pred eEEEeCCCCcEEEEECC--CCcEEEEee---c--CCCCeEEEEEecCCCEEEEEeCC---------CeEEEEEccCCCcc
Q 018858 30 FVASSGEDGCICWFDLR--SKDVQLVTD---V--GNGPVTSLCFKSGNEDIIYVSSG---------KEVKSFDVHMPASW 93 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~--~~~~~~~~~---~--~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~ 93 (349)
+.+.++..-.|.-||-. .-....++. . .......-..+|+|++.+-.-.| |.++.|-..- .+
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v 150 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QV 150 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--Cc
Confidence 44445544455567732 222233321 1 12334455678999984332222 5666665431 12
Q ss_pred cceeeccCcccceEEEEEccCCCEE-EEEcCCCcEEEEE--cCCce
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFL-ACADDGGDVKIID--IRQHC 136 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d--~~~~~ 136 (349)
..+.. .-.--..++|+.+.+.+ ++-+.+-.|.-|| +.+|.
T Consensus 151 ~~i~~---~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~ 193 (310)
T KOG4499|consen 151 ELIWN---CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD 193 (310)
T ss_pred eeeeh---hccCCccccccccCcEEEEEccCceEEeeeecCCCccc
Confidence 22221 12334578898777655 4556666787777 54554
No 448
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.21 E-value=4.2 Score=31.14 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=21.0
Q ss_pred cccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 317 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
...++.+++..|..|++|+ |+ ++++.+|.+
T Consensus 133 l~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l 162 (215)
T PF14761_consen 133 LSEPPLCIACCPVTGNLLV-GC-GNKLVLFTL 162 (215)
T ss_pred CCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEE
Confidence 3567889999998887554 43 457777764
No 449
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.51 E-value=0.16 Score=46.68 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=53.2
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee----------cCCCCcE
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT----------PTESENL 334 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------~~~~~~l 334 (349)
..+.-+.|.|+.++.-++..+-.++.+++...++. ....+.+|...++.+++. ++||..+
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra----------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~ 250 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA----------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVF 250 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechH----------HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEE
Confidence 44566777777678888888888899999888774 224445576665555433 3488888
Q ss_pred EEeeCCCeEEEeeC
Q 018858 335 VVCDTSKVVKVYSI 348 (349)
Q Consensus 335 ~~~~~dg~i~iw~~ 348 (349)
+.++.||.++.|.+
T Consensus 251 a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 251 AWAISDGSVGFYQI 264 (1283)
T ss_pred EEeecCCccceeee
Confidence 99999999888864
No 450
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.41 E-value=1.4 Score=37.61 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=45.5
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc--cceeeccCc-ccceE-EEEEccCCCEEEEEcCCCcEEE
Q 018858 54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW--RPLESYNYN-KEEIN-QIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~-~~~v~-~~~~~~~~~~l~~~~~dg~i~i 129 (349)
+......|..+-..|+|+.+..-+. .++.++++.+.... +.....++. ...|+ .+..-..+.-+++++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 3444567778888999998887765 67888888753211 111111110 01122 1122234566788889999887
Q ss_pred E-EcC
Q 018858 130 I-DIR 133 (349)
Q Consensus 130 ~-d~~ 133 (349)
| |++
T Consensus 295 WFdvr 299 (733)
T COG4590 295 WFDVR 299 (733)
T ss_pred eeeee
Confidence 7 554
No 451
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.09 E-value=7.2 Score=31.65 Aligned_cols=118 Identities=16% Similarity=0.243 Sum_probs=70.2
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe------CCCeEEEEEccCCCcccceee-c-cCcccceEE
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS------SGKEVKSFDVHMPASWRPLES-Y-NYNKEEINQ 108 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~-~-~~~~~~v~~ 108 (349)
-..|++||..+.+....-.+-.+.|+.+.|..+.+.++.|. ....+..||+.+.. ...+.. . ....+++..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 35699999887765444444567899999987666666664 34578899988642 222222 1 112366777
Q ss_pred EEEcc-CC-CEEEEEc-CCC--cEEEEEcCCceEece-eccccccceeEEEEcc
Q 018858 109 IVCNP-KS-SFLACAD-DGG--DVKIIDIRQHCLYKS-LRAGHSSICSSVQFIP 156 (349)
Q Consensus 109 ~~~~~-~~-~~l~~~~-~dg--~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~ 156 (349)
+.+.. ++ +..+.|. .++ .|..||=.+...+.. .. .....|..+.+-|
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~-~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDIL-GSGTTIRGLQVLP 146 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEecccccc-CCCCEEEEEEEEe
Confidence 77643 33 3444443 233 477777555555444 22 3355677777766
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.07 E-value=7.1 Score=34.24 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=47.7
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecC---------CCcceec---ccccceeeeccccccceEEEEeecCC--
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCS---------RFQGVQT---SINNDLLIKNINLNKKVNWLCTTPTE-- 330 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~---------~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~-- 330 (349)
-.|..+..+ +.|..++-.|.+|.+.++=.+ .++.... ..-...+.... ..-.+...+|+|..
T Consensus 104 feV~~vl~s---~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 104 FEVYQVLLS---PTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEEec---CCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccC
Confidence 357788888 888888888888866554311 1111000 00000111111 12245667899854
Q ss_pred CCcEEEeeCCCeEEEeeCC
Q 018858 331 SENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 331 ~~~l~~~~~dg~i~iw~~~ 349 (349)
...|..-+.|..|++||++
T Consensus 180 D~hL~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLS 198 (741)
T ss_pred CceEEEEecCcEEEEEecC
Confidence 4578888999999999975
No 453
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.97 E-value=1.4 Score=23.32 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=25.8
Q ss_pred cCCCceEE-EeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEE
Q 018858 25 RDRPGFVA-SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCF 66 (349)
Q Consensus 25 ~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 66 (349)
|+ ++.|+ +...++.|.++|..+++.+..+... .....++|
T Consensus 1 pd-~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PD-GTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CC-CCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 44 45444 4556789999999988887777753 33334443
No 454
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=7 Score=37.05 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=40.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcEE---EE------e--ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQ---LV------T--DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~---~~------~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
++.+..|+.+|.+.+|.+...... .. + ..+..+|..+...+.-+.++.- .|+.+.++++.+.+
T Consensus 26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELE 99 (877)
T ss_pred CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCccc
Confidence 678999999999999998754221 11 0 0134666666666555544443 47778888877543
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.76 E-value=1.5 Score=23.23 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=22.8
Q ss_pred cCCCEEEEEc-CCCcEEEEEcCCceEeceec
Q 018858 113 PKSSFLACAD-DGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 113 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 142 (349)
|++++|+++. .++.|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 4666665544 57889999999888887776
No 456
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.22 E-value=4.8 Score=28.19 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=42.8
Q ss_pred EEEccCCCEEEEEcCCCcEEEEEcCCce--------EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeE
Q 018858 109 IVCNPKSSFLACADDGGDVKIIDIRQHC--------LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVH 180 (349)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (349)
-.|......|++++.-|.|.|++..... .+..+. .+..|++++-.+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~------------------------ 57 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGR------------------------ 57 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEe------------------------
Confidence 3455555678888888999999876332 222222 344555554333
Q ss_pred EeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 181 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
+.| +.....|+.|+. ..|..||...+
T Consensus 58 ---l~~----~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 58 ---LKP----DDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred ---cCC----CCCcCEEEEecc-ceEEEEEcccC
Confidence 100 114567777765 56889999864
No 457
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.01 E-value=8.6 Score=30.77 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=54.5
Q ss_pred CeEEEEEecCCCEEEEEe---CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEE-cCCc
Q 018858 60 PVTSLCFKSGNEDIIYVS---SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID-IRQH 135 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~ 135 (349)
.+.+.+++++++.++... ....+.++.... ...... . ...+....|.+++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~--~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL--T--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec--c--CCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688899999999887766 234566665442 222221 1 24677789999987777666666666663 2333
Q ss_pred eEe-ceeccc-cccceeEEEEcc
Q 018858 136 CLY-KSLRAG-HSSICSSVQFIP 156 (349)
Q Consensus 136 ~~~-~~~~~~-~~~~v~~~~~~~ 156 (349)
... ...... ....|..+.++|
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSp 121 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSP 121 (253)
T ss_pred cceeEEecccccCCceEEEEECC
Confidence 221 111101 112788999998
No 458
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.66 E-value=17 Score=33.59 Aligned_cols=32 Identities=9% Similarity=0.009 Sum_probs=26.7
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
+.+..+.+| |+.++|+-=..+|.|.+-+.+..
T Consensus 217 ~~~~ki~VS---~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 217 SSVVKISVS---PNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred ceEEEEEEc---CCcceEEEEecCCcEEEEecchh
Confidence 567788889 89999998888999998887764
No 459
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.51 E-value=5.8 Score=38.77 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=49.0
Q ss_pred CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcce-e----------c-----ccccceeeeccccccceEEEEee
Q 018858 264 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV-Q----------T-----SINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-~----------~-----~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
...|+++... .+|+.+.+|-. | .+|.+.-.... + + .--+.++.....+.++|..+++.
T Consensus 178 g~~V~~I~~t---~nGRIF~~G~d-g--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 178 GVSVNCITYT---ENGRIFFAGRD-G--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred CceEEEEEec---cCCcEEEeecC-C--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 4578899877 78888887664 4 35544211000 0 0 00011222234677899999985
Q ss_pred cCCCCcEEEeeCCCeEEEeeCC
Q 018858 328 PTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
. .-..+.+-+..|+|.+|++.
T Consensus 252 ~-SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 252 N-SRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred c-ccceeeeeccCceEEEEEcc
Confidence 4 44578888999999999973
No 460
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.98 E-value=22 Score=34.02 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=42.6
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEE
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 344 (349)
+.+.++.. -+|+++|.-+ ..|++|++.+. +.+..-..+..++..+...- .++.+++|..=+.+.
T Consensus 830 Gav~aL~~----fngkllA~In--~~vrLye~t~~---------~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 830 GAVYALVE----FNGKLLAGIN--QSVRLYEWTTE---------RELRIECNISNPIIALDLQV-KGDEIAVGDLMRSIT 893 (1096)
T ss_pred cceeehhh----hCCeEEEecC--cEEEEEEcccc---------ceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEE
Confidence 45666654 3788887654 58999999986 45555556666777776644 566777776555444
Q ss_pred E
Q 018858 345 V 345 (349)
Q Consensus 345 i 345 (349)
+
T Consensus 894 l 894 (1096)
T KOG1897|consen 894 L 894 (1096)
T ss_pred E
Confidence 3
No 461
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.74 E-value=1.7 Score=22.70 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=19.9
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCC--CcEEEE
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGED--GCICWF 43 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~d--g~i~vw 43 (349)
++......-.+..|+|++..+++++..+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4444556677889999943444555555 666555
No 462
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.49 E-value=15 Score=31.63 Aligned_cols=131 Identities=13% Similarity=0.076 Sum_probs=66.8
Q ss_pred eeEEEEecCCCceEEEeCCCCcE-EEEECCCCcE--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 18 ATCCIASRDRPGFVASSGEDGCI-CWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i-~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
...+..+++ +.+++.+.. |.+ +-|| .++. ...-......+..+.+.+++..++++ ..|.+.. ....++...
T Consensus 241 f~~v~~~~d-G~~~~vg~~-G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPD-GDYVAVSSR-GNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEE 314 (398)
T ss_pred eeeEEEcCC-CCEEEEECC-ccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccc
Confidence 334455565 666666554 433 3343 2322 11112234568899999888866655 5665433 333332111
Q ss_pred --ceeeccC--cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec--cccccceeEEEEcc
Q 018858 95 --PLESYNY--NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIP 156 (349)
Q Consensus 95 --~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~ 156 (349)
.+..... ....+..+.+.+++..+++| ..|.+..-. ..++.-...+ ..-....+.+.|.+
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~ 380 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD 380 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC
Confidence 2222211 12347888898877766555 557665543 3443322222 02234677888866
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.45 E-value=21 Score=35.07 Aligned_cols=107 Identities=18% Similarity=0.258 Sum_probs=54.3
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCC-CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
....++|+|. ..+++.+...|.|+++-...-+.....+... ..+..+.+-...........+..+.+|...... .
T Consensus 37 ~~~~~afD~~-q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~---~ 112 (993)
T KOG1983|consen 37 TPSALAFDPT-QGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT---G 112 (993)
T ss_pred CCcceeeccc-cceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc---e
Confidence 4556789998 7899999999999999654322211111000 012222222112223333345556666554211 0
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
.+ ....+++....+--.+ +.| ..+.+++||..
T Consensus 113 --~~--~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~ 144 (993)
T KOG1983|consen 113 --VF--LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVL 144 (993)
T ss_pred --ee--cCCcceeccCCCCcch-hcc-cCceeeEeeec
Confidence 11 1233444443333334 555 77888888864
No 464
>PRK10115 protease 2; Provisional
Probab=88.32 E-value=23 Score=33.33 Aligned_cols=71 Identities=8% Similarity=-0.037 Sum_probs=45.4
Q ss_pred CeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC------CcEE
Q 018858 60 PVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG------GDVK 128 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~ 128 (349)
.+..+.++|++++|+.+... -.|++.|+.++... ...+. ..-..++|.++++.|+....+ ..|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l--~~~i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY--PELLD---NVEPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC--Ccccc---CcceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 36667899999998876432 36888898876421 11121 111458999998766654332 3577
Q ss_pred EEEcCCc
Q 018858 129 IIDIRQH 135 (349)
Q Consensus 129 i~d~~~~ 135 (349)
.+++.++
T Consensus 203 ~h~lgt~ 209 (686)
T PRK10115 203 RHTIGTP 209 (686)
T ss_pred EEECCCC
Confidence 7787766
No 465
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.05 E-value=12 Score=29.71 Aligned_cols=84 Identities=10% Similarity=0.100 Sum_probs=46.5
Q ss_pred EEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccC---CCcccce-eeccCcccceEEEEEc
Q 018858 40 ICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHM---PASWRPL-ESYNYNKEEINQIVCN 112 (349)
Q Consensus 40 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~---~~~~~~~-~~~~~~~~~v~~~~~~ 112 (349)
-.+||+.+++....-...+..+.+-.+.++|+.+.+|+.. ..+++++... ....... ..+. ....--....-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 4578888776532212233334445677899999988752 3578887543 1111111 1111 11222334455
Q ss_pred cCCCEEEEEcCC
Q 018858 113 PKSSFLACADDG 124 (349)
Q Consensus 113 ~~~~~l~~~~~d 124 (349)
|||+.|+.|+..
T Consensus 127 ~DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 PDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEEeCcC
Confidence 789999988876
No 466
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.99 E-value=14 Score=30.74 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=13.7
Q ss_pred CCcEEEEEcCCC----eEEEEEccCc
Q 018858 193 TNKICVVAKGDG----VVDVINIESE 214 (349)
Q Consensus 193 ~~~~l~~~~~dg----~i~i~d~~~~ 214 (349)
++++.+.|+.++ .+..||.++.
T Consensus 171 ~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 171 QNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEcCCCCccccceEEEecCCC
Confidence 467777777654 2456777654
No 467
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.91 E-value=16 Score=31.12 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=50.9
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc--ccccceEEEEeecC-CC
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPT-ES 331 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~ 331 (349)
++++.+.. .+.+..+... ....+|+.+-+|.-|+-|+.+...... ...+.... .....|-.++.... ++
T Consensus 199 ~lVR~f~~-~sQ~EGCVVD---De~g~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~g 270 (381)
T PF02333_consen 199 TLVREFKV-GSQPEGCVVD---DETGRLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSDG 270 (381)
T ss_dssp EEEEEEE--SS-EEEEEEE---TTTTEEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CCC
T ss_pred EEEEEecC-CCcceEEEEe---cccCCEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCCC
Confidence 45556653 3467888888 777899999999888888876432110 02222222 24567888877542 22
Q ss_pred -CcEEEee-CCCeEEEeeC
Q 018858 332 -ENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 332 -~~l~~~~-~dg~i~iw~~ 348 (349)
.||++.+ .+++..||+.
T Consensus 271 ~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 271 KGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp -EEEEEEEGGGTEEEEEES
T ss_pred CeEEEEEcCCCCeEEEEec
Confidence 3555554 6788999985
No 468
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.80 E-value=17 Score=34.64 Aligned_cols=115 Identities=10% Similarity=0.067 Sum_probs=73.7
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-----EEEEeecCCC----------CeEEEEEecCCCEEEEEeCCC
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVGNG----------PVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~dg 80 (349)
.+...++|+|.+...||.....|.-.||++.... .......+.+ .-..+.|.++.+.|++++. .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence 3567899999878899999999999999992111 1111111112 2236889888888888875 4
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~ 134 (349)
.+.++|+++......+... .....|..+.-+|. +..|+.. ...|...++..
T Consensus 225 ~l~~~d~~~~~~~~~l~~~-~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTA-KTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccC-CChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 5889999876443322221 12356888888876 3333332 24687788775
No 469
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.73 E-value=14 Score=30.13 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=38.0
Q ss_pred CCcceEEEEEeeecCCccEEEEee------CCCeEEEEecCCCcceecccccceeeecc-----ccccceEEEEeecCCC
Q 018858 263 HTAAASCVAFSMFGERGKYLISGG------NDKLVKVWDCSRFQGVQTSINNDLLIKNI-----NLNKKVNWLCTTPTES 331 (349)
Q Consensus 263 h~~~i~~i~~~~~~~~~~~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~ 331 (349)
-.+.|+.+.|. .+.+.++.|. ....+..||..+.. ...+. .-.++|+.+.+...++
T Consensus 35 i~G~V~~l~~~---~~~~Llv~G~ft~~~~~~~~la~yd~~~~~----------w~~~~~~~s~~ipgpv~a~~~~~~d~ 101 (281)
T PF12768_consen 35 ISGTVTDLQWA---SNNQLLVGGNFTLNGTNSSNLATYDFKNQT----------WSSLGGGSSNSIPGPVTALTFISNDG 101 (281)
T ss_pred ceEEEEEEEEe---cCCEEEEEEeeEECCCCceeEEEEecCCCe----------eeecCCcccccCCCcEEEEEeeccCC
Confidence 45789999997 5666777664 35678899988852 11222 2346777777755455
Q ss_pred CcEE
Q 018858 332 ENLV 335 (349)
Q Consensus 332 ~~l~ 335 (349)
..+.
T Consensus 102 ~~~~ 105 (281)
T PF12768_consen 102 SNFW 105 (281)
T ss_pred ceEE
Confidence 4344
No 470
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.56 E-value=1.8 Score=21.47 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=21.4
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEe
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVT 54 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~ 54 (349)
..++.++.+|.+..+|.++++.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778888999999999999887653
No 471
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=86.73 E-value=16 Score=29.91 Aligned_cols=79 Identities=8% Similarity=0.037 Sum_probs=37.7
Q ss_pred eEEEEEeeecCCccEEEEeeCCCeEEEEecCCC-----cceecccccceeeeccccc-cceEEEEeecCCCCcEEEeeCC
Q 018858 267 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF-----QGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 267 i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d 340 (349)
+..++.+|..+++++|+-....+ -++|.+++. ...........+..+ +.. .....+++.+ +|.+.++--..
T Consensus 130 ~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D~-~G~ly~~~~~~ 206 (287)
T PF03022_consen 130 IFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAIDP-NGNLYFTDVEQ 206 (287)
T ss_dssp EEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEEET-TTEEEEEECCC
T ss_pred ccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEECC-CCcEEEecCCC
Confidence 78888875555777777555322 234444321 110000000111111 221 3445566766 77666666788
Q ss_pred CeEEEeeC
Q 018858 341 KVVKVYSI 348 (349)
Q Consensus 341 g~i~iw~~ 348 (349)
+.|..|+.
T Consensus 207 ~aI~~w~~ 214 (287)
T PF03022_consen 207 NAIGCWDP 214 (287)
T ss_dssp TEEEEEET
T ss_pred CeEEEEeC
Confidence 88999874
No 472
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.07 E-value=19 Score=30.19 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=33.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee----ccCcccceEEEEEccC
Q 018858 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES----YNYNKEEINQIVCNPK 114 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~ 114 (349)
..+.|+|.|+|+.++ +...|.|++++ ..+.....+.. ..........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 357899999987655 56699999999 33322122222 2233467889999994
No 473
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.01 E-value=10 Score=28.29 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=25.0
Q ss_pred cceEEEEEccCC------CEEEEEcCCCcEEEEEcCC
Q 018858 104 EEINQIVCNPKS------SFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 104 ~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~~~ 134 (349)
..+..++|+|.| ..|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 4788889999999998553
No 474
>PRK05560 DNA gyrase subunit A; Validated
Probab=85.94 E-value=34 Score=32.87 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=58.3
Q ss_pred CceEEEeCCCCcEEEEECCCCcE---------EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc---CCC---c
Q 018858 28 PGFVASSGEDGCICWFDLRSKDV---------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH---MPA---S 92 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~---~ 92 (349)
...++.-+.+|.|+--++.+... ...++. ...+..+......+.|+..+..|.+...... ... .
T Consensus 498 E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~ 576 (805)
T PRK05560 498 EDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTAR 576 (805)
T ss_pred CCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCC
Confidence 56788888899888776543211 111121 2334444444566667777778876665443 211 0
Q ss_pred ccce---eeccCcccceEEEEEcc--CCCEEEEEcCCCcEEEEEcC
Q 018858 93 WRPL---ESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 93 ~~~~---~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~ 133 (349)
...+ -.+...+.-+..+.+.. +...++..+.+|.++--++.
T Consensus 577 G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~ 622 (805)
T PRK05560 577 GRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS 622 (805)
T ss_pred CeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH
Confidence 1111 11222233345555552 56788888999998887764
No 475
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.48 E-value=13 Score=27.68 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=30.9
Q ss_pred CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 176 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
...+..++++|...-...+.+|++.+.+|.|.+|....
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 34788999999776555577889999999999998774
No 476
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.29 E-value=38 Score=32.86 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=60.6
Q ss_pred cEEEEECCCCcEEEEeecCC----CCeEEEEEecCCC--EEEEEeC-----------CCeEEEEEccC-CCcccceeecc
Q 018858 39 CICWFDLRSKDVQLVTDVGN----GPVTSLCFKSGNE--DIIYVSS-----------GKEVKSFDVHM-PASWRPLESYN 100 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~--~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~~~ 100 (349)
.|++.|..+++.+..+.... ..+..+.|+.... +++++.. +|.++.|++-. ++..+.+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 47888877777665554322 3455666655333 3344332 34567776543 32222222221
Q ss_pred CcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccc-ccceeEEEE
Q 018858 101 YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-SSICSSVQF 154 (349)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~ 154 (349)
-...+ .+..|-..++++|-. ..+++||+...++++..+..+ ...|..+++
T Consensus 934 -~~~~v--~Ai~~f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt 984 (1205)
T KOG1898|consen 934 -IPGPV--GAICPFQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQT 984 (1205)
T ss_pred -CCccc--eEEeccCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEee
Confidence 12233 456676666666544 589999998877766554122 445566655
No 477
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=85.09 E-value=3.9 Score=21.29 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.7
Q ss_pred eEEEeCCCCcEEEEECCCCcEEEEeec
Q 018858 30 FVASSGEDGCICWFDLRSKDVQLVTDV 56 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~~~~~~~ 56 (349)
.++.++.+|.|+-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 355668899999999999999888764
No 478
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=85.06 E-value=28 Score=33.11 Aligned_cols=97 Identities=10% Similarity=0.181 Sum_probs=48.5
Q ss_pred CCCCcEEEEECCCCcEEEEeecCCCCeEEEEE-ecCCC-------EEEEEeCCCeEEEEEccCCCcccceeec------c
Q 018858 35 GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCF-KSGNE-------DIIYVSSGKEVKSFDVHMPASWRPLESY------N 100 (349)
Q Consensus 35 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~-------~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~ 100 (349)
..|..+.+|++.++...+.+..-...|..+.. -|..+ .++.......+.++-+...+....+..+ .
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnTgl~vs 178 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNTGLVVS 178 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEecceEEe
Confidence 34778999999877655444443334444433 22221 1112222333444433211111111111 1
Q ss_pred CcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 101 YNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
...-.|.|+.-+.+|+.|++|..| +.+|.+.
T Consensus 179 vqGinV~civs~e~GrIFf~g~~d--~nvyEl~ 209 (1263)
T COG5308 179 VQGINVRCIVSEEDGRIFFGGEND--PNVYELV 209 (1263)
T ss_pred ccCceeEEEEeccCCcEEEecCCC--CCeEEEE
Confidence 112457888888889888888776 6667653
No 479
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=84.92 E-value=21 Score=29.50 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=33.3
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG 57 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 57 (349)
|+++...++ |++|+++-.-..|.+.|-.+++.+..+.+.
T Consensus 146 iNsV~~~~~-G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 146 INSVDKDDD-GDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred eeeeeecCC-ccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 667777777 799999998899999999999999888765
No 480
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.79 E-value=35 Score=32.03 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=24.7
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
-...|...+||.|.+.++....+..|.+++-
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 3467888899999998888887888888763
No 481
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.33 E-value=12 Score=26.31 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=65.7
Q ss_pred EEecCCCceEEEeCCCCcEEEEECCCCc--------EEEEeecCCCCeEEEEEec-----CCCEEEEEeCCCeEEEEEcc
Q 018858 22 IASRDRPGFVASSGEDGCICWFDLRSKD--------VQLVTDVGNGPVTSLCFKS-----GNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~ 88 (349)
.|... ..-|+.++.-|.|.|++..... .+..+. -...|++++-.+ ..+.|+.|+ ...+..||++
T Consensus 5 kfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGV-HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EeCCC-ceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 45444 3457777777889998865332 233343 456777776543 345566666 5669999999
Q ss_pred CCCcccceeeccCcccceEEEEEcc---CCCEEEEEcCCCcEEEEEcCCceEecee
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNP---KSSFLACADDGGDVKIIDIRQHCLYKSL 141 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 141 (349)
.+..... +.. .+.+.++.+-. ...-++..+.+..|.-||.+..+...+.
T Consensus 82 ~N~d~Fy-ke~---~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFY-KEV---PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhh-hhC---ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 7643221 112 36677776632 2233444444567888887665555443
No 482
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=84.21 E-value=24 Score=29.75 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=13.8
Q ss_pred CCCEEEEEeCC-----------CeEEEEEccCC
Q 018858 69 GNEDIIYVSSG-----------KEVKSFDVHMP 90 (349)
Q Consensus 69 ~~~~l~~~~~d-----------g~i~iwd~~~~ 90 (349)
+++..+.|+.+ ..+..||..+.
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 56666777653 24677887754
No 483
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.87 E-value=29 Score=30.34 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=21.0
Q ss_pred eEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 179 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
+..+.+.+ ..+.+++.+.+|.|.+|++..
T Consensus 192 I~~v~~d~------~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDP------SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEET------TTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecC------CcCEEEEEeCCCcEEEEEEeC
Confidence 45555544 568999999999999999974
No 484
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.73 E-value=13 Score=34.23 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=46.3
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
....++++.-+|. +.-++.+..||.|++|+....+. +++.. .|-..+.|...| |+++..|..+.-|.-
T Consensus 13 ~~e~~~aiqshp~-~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPG-GQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred ccceeeeeeecCC-CceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeeccc--eEEEeccchhheeec
Confidence 3456788888897 88999999999999999875543 33322 333445565433 666666777777753
No 485
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=82.97 E-value=3.9 Score=21.29 Aligned_cols=26 Identities=8% Similarity=0.081 Sum_probs=22.4
Q ss_pred EEEEEcCCCcEEEEEcCCceEeceec
Q 018858 117 FLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 117 ~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.+..++.+|.|+-+|.++|+.+..++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 35566899999999999999988877
No 486
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=82.15 E-value=11 Score=24.36 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=26.8
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEE
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA 121 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 121 (349)
.+|.+..||..+++....+..+ ...+.+++++++.+++.+
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L----~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGL----YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEE----SSEEEEEE-TTSSEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCC----CccCeEEEcCCCCEEEEE
Confidence 4588999999886543444444 457889999999877655
No 487
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.11 E-value=21 Score=27.43 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=56.2
Q ss_pred CCceEEEeCCC--CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccCcc
Q 018858 27 RPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESYNYNK 103 (349)
Q Consensus 27 ~~~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~ 103 (349)
++.++.+.+.- ..|++||+.+++.+.+-+-....+..=-...-++++..- =.+|.-.++|.++- +.+..+.. +
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~---~~lg~~~y-~ 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL---EELGRFSY-E 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHh---hhhccccc-C
Confidence 35667666653 469999999998876544322122221122224444333 34777788887763 33333321 2
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCCc
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQH 135 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 135 (349)
+.-+.++ .+++.|..+.....++.-|.++-
T Consensus 131 GeGWgLt--~d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 131 GEGWGLT--SDDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred Ccceeee--cCCcceEeeCCceEEEecCHHHh
Confidence 3344444 35555666665566777676543
No 488
>PLN02193 nitrile-specifier protein
Probab=81.69 E-value=38 Score=30.16 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=50.9
Q ss_pred CceEEEeCCC-----CcEEEEECCCCcEEEEeec----CCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCcc
Q 018858 28 PGFVASSGED-----GCICWFDLRSKDVQLVTDV----GNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASW 93 (349)
Q Consensus 28 ~~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 93 (349)
+.+.+.|+.+ ..+..||+.+.+....-.. ....-.+++. -+++..+.|+.+ ..+..||+.+.+ .
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W 306 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-W 306 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-E
Confidence 5666677654 3577888876553221111 1111122222 245566666654 346778877542 2
Q ss_pred cceee---ccCcccceEEEEEccCCCEEEEEcCC----CcEEEEEcCCce
Q 018858 94 RPLES---YNYNKEEINQIVCNPKSSFLACADDG----GDVKIIDIRQHC 136 (349)
Q Consensus 94 ~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~ 136 (349)
..+.. ............+ +++.++.++.+ ..+.+||+.+.+
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCE
Confidence 21111 0001111112222 46667777654 358888887654
No 489
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.63 E-value=26 Score=28.23 Aligned_cols=155 Identities=6% Similarity=-0.100 Sum_probs=92.5
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEee
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIA 183 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (349)
.....++-.|||..-+++...+.|--.|-++++....-- +.......+...|
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gp--------------------------- 113 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGP--------------------------- 113 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEec-CCCCCCceEEECC---------------------------
Confidence 345667778899888888888888888998988755444 5666677788877
Q ss_pred cCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee--cCCCCCCccceeeeeccccEEEEee-eeeecCceeeeeeeee
Q 018858 184 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISR--SKSTTKPLKGSQSTSKVNIRDAEME-ILDQSGGKRLHLDYSV 260 (349)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 260 (349)
++..-++-+.. -|.-+|-++.+.... .............|.++|....+.. ..-+.....-..+..+
T Consensus 114 ---------dg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vf 183 (353)
T COG4257 114 ---------DGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVF 183 (353)
T ss_pred ---------CCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeee
Confidence 55555443333 455555554433221 1223345567788999998877511 0011111111223333
Q ss_pred cCC-CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 261 GGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 261 ~~h-~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
... ....+.|+.. |+|..-++.-.+..|-..|...+
T Consensus 184 paPqG~gpyGi~at---pdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 184 PAPQGGGPYGICAT---PDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred ccCCCCCCcceEEC---CCCcEEEEeccccceEEcccccC
Confidence 322 2345677777 78887777666666766676654
No 490
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=81.42 E-value=29 Score=28.65 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=33.7
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccc
Q 018858 105 EINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH 145 (349)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 145 (349)
.+.++...++|.+|++.-.-..|.+.|-++++++..+. +.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lg-G~ 184 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLG-GK 184 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeC-CC
Confidence 36677778889999998888889999999999998887 44
No 491
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.38 E-value=4.1 Score=36.91 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=28.4
Q ss_pred eeeEEEEec---CCCceEEEeCCCCcEEEEECCCCcEEEEee
Q 018858 17 TATCCIASR---DRPGFVASSGEDGCICWFDLRSKDVQLVTD 55 (349)
Q Consensus 17 ~i~~~~~~~---~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~ 55 (349)
.+..+++++ ++..+|++.+.|+++++||+.+++++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 344455554 126899999999999999999999876654
No 492
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=80.90 E-value=50 Score=31.08 Aligned_cols=92 Identities=17% Similarity=0.117 Sum_probs=51.2
Q ss_pred EEEEecCCCEEEEEeCCC-----eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 63 SLCFKSGNEDIIYVSSGK-----EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
.+.|-|+|..+++-+.|| .|..+....- .......-.+....+..++|+-....++.+ ....+++|-..+-.-
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGL-rHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGL-RHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCc-ccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 478999999999987554 4555543311 111111111223456667776655545443 345799998765432
Q ss_pred eceeccccccceeEEEEccC
Q 018858 138 YKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~ 157 (349)
.-... ..-..+.-+.|+|.
T Consensus 329 YLK~e-~~ip~~s~vkwhpe 347 (1243)
T COG5290 329 YLKVE-RQIPGISYVKWHPE 347 (1243)
T ss_pred EEEEe-ecCCCcceeeeccc
Confidence 22222 22345667889984
No 493
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=80.68 E-value=4.8 Score=19.21 Aligned_cols=26 Identities=8% Similarity=0.291 Sum_probs=20.0
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..|.+++..+ .+++.+.+-+.+|+|.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 3577777744 3899999999999984
No 494
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.44 E-value=40 Score=29.69 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=37.8
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE--EEEee-----cCCCCeEEEEEecCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTD-----VGNGPVTSLCFKSGN 70 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~-----~~~~~v~~~~~~~~~ 70 (349)
.-..-+.|+|.|+ +++|++--..|.|++++..++.. +..+. ........|+++|+-
T Consensus 28 GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3445678999998 77777765569999998655432 21111 135678999999874
No 495
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=80.04 E-value=14 Score=23.98 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=28.1
Q ss_pred eeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee--CCCeEEEe
Q 018858 285 GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD--TSKVVKVY 346 (349)
Q Consensus 285 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw 346 (349)
+..+|.+.-||..+++ ...+..--.-.+.++.++ |+++|+.+- .-...+.|
T Consensus 33 ~~~~GRll~ydp~t~~----------~~vl~~~L~fpNGVals~-d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKE----------TTVLLDGLYFPNGVALSP-DESFVLVAETGRYRILRYW 85 (89)
T ss_dssp T---EEEEEEETTTTE----------EEEEEEEESSEEEEEE-T-TSSEEEEEEGGGTEEEEEE
T ss_pred CCCCcCEEEEECCCCe----------EEEehhCCCccCeEEEcC-CCCEEEEEeccCceEEEEE
Confidence 4456888888888863 222222233568889987 777776662 33344444
No 496
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=80.01 E-value=32 Score=28.22 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=37.9
Q ss_pred cEEEEECCCCcEEEEeecC------CCCeEEEEEecCCC----EEEEE--eCCCeEEEEEccCCCcccce
Q 018858 39 CICWFDLRSKDVQLVTDVG------NGPVTSLCFKSGNE----DIIYV--SSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~----~l~~~--~~dg~i~iwd~~~~~~~~~~ 96 (349)
.|.+||+.+.+.++++... .+.+..+.+..... .+|.. +..+.|.|+|+.+++..+.+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~ 104 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVL 104 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEe
Confidence 7899999999988776542 35667777765221 33332 23458999999987654443
No 497
>PLN02193 nitrile-specifier protein
Probab=78.91 E-value=47 Score=29.57 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=31.0
Q ss_pred CceEEEeCCC-------CcEEEEECCCCcEEEEeecC-CCC----eEEEEEecCCCEEEEEeCC-----CeEEEEEccCC
Q 018858 28 PGFVASSGED-------GCICWFDLRSKDVQLVTDVG-NGP----VTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMP 90 (349)
Q Consensus 28 ~~~l~t~~~d-------g~i~vwd~~~~~~~~~~~~~-~~~----v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 90 (349)
+.+++.|+.+ ..+.+||+.+.+-.. +... ..+ .......-++...+.|+.+ ..+..+|+.+.
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 4566666643 246778877654321 1110 011 1111112245556666654 36888888764
No 498
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=78.86 E-value=48 Score=29.61 Aligned_cols=153 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCceEEEe---CCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcc
Q 018858 27 RPGFVASS---GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK 103 (349)
Q Consensus 27 ~~~~l~t~---~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 103 (349)
++-++++. ...+...+.|.. |..++.+.........+...++|.+++... ..+..+|+. .+.+.......
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~----G~v~~~~~l~~ 186 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL----GKVIWEYDLPG 186 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT------EEEEEE--T
T ss_pred CcEEEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC----CCEEEeeecCC
Q ss_pred cc---eEEEEEccCCCEEEEEcC-------------CCcEEEEEcCCceEeceeccccccc-------------------
Q 018858 104 EE---INQIVCNPKSSFLACADD-------------GGDVKIIDIRQHCLYKSLRAGHSSI------------------- 148 (349)
Q Consensus 104 ~~---v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~------------------- 148 (349)
.. =..+..-|+|++|+.+.. .-.|..+| .+|+.+..+. ...--
T Consensus 187 ~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd-~~d~ld~~~~~~~~~~~~~~~~~~ 264 (477)
T PF05935_consen 187 GYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWD-FFDHLDPYRDTVLKPYPYGDISGS 264 (477)
T ss_dssp TEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEE-GGGTS-TT--TTGGT--SSSSS-S
T ss_pred cccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEe-hHHhCCcccccccccccccccccC
Q ss_pred --------eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec
Q 018858 149 --------CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 220 (349)
Q Consensus 149 --------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 220 (349)
+.++.+.+. ++.+++++-.-..|...|.++++..-.+
T Consensus 265 ~~~~DW~H~Nsi~yd~~-----------------------------------dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 265 GGGRDWLHINSIDYDPS-----------------------------------DDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp STTSBS--EEEEEEETT-----------------------------------TTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred CCCCCccccCccEEeCC-----------------------------------CCeEEEEcCcceEEEEEECCCCcEEEEe
Q ss_pred CCC
Q 018858 221 KST 223 (349)
Q Consensus 221 ~~~ 223 (349)
..+
T Consensus 310 g~~ 312 (477)
T PF05935_consen 310 GPP 312 (477)
T ss_dssp S-S
T ss_pred CCC
No 499
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=78.08 E-value=53 Score=29.70 Aligned_cols=95 Identities=12% Similarity=0.155 Sum_probs=59.6
Q ss_pred CcEEEEECCCCcEEEEeec--CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEcc--
Q 018858 38 GCICWFDLRSKDVQLVTDV--GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-- 113 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 113 (349)
..|.+.| ++.+.+..+.+ ..+.|.++.|--+.-+++|=-.---+.+.|+..++..+.+-.++-. +.-. -+||
T Consensus 304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIP-GfS~--YLHP~~ 379 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIP-GFSD--YLHPYD 379 (521)
T ss_pred EEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECc-cchh--ceeECC
Confidence 4566666 55666666553 5678999999987777877666566899999987776666655311 1112 2344
Q ss_pred CCCEEEEEcCCC-----------cEEEEEcCCce
Q 018858 114 KSSFLACADDGG-----------DVKIIDIRQHC 136 (349)
Q Consensus 114 ~~~~l~~~~~dg-----------~i~i~d~~~~~ 136 (349)
++.+|-.|-+.. .|.+||+.+..
T Consensus 380 e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~ 413 (521)
T PF09826_consen 380 ENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPA 413 (521)
T ss_pred CCeEEEEcccCcccccccccceeEEEEEecCCCC
Confidence 334444443321 37789887543
No 500
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=77.94 E-value=40 Score=28.16 Aligned_cols=105 Identities=8% Similarity=0.105 Sum_probs=49.5
Q ss_pred CceEEEeCCC-----CcEEEEECCCCcE---EEEeecCCCCe--EEEEEecCCCEEEEEeC-----CCeEEEEEccCCCc
Q 018858 28 PGFVASSGED-----GCICWFDLRSKDV---QLVTDVGNGPV--TSLCFKSGNEDIIYVSS-----GKEVKSFDVHMPAS 92 (349)
Q Consensus 28 ~~~l~t~~~d-----g~i~vwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~ 92 (349)
+.+++.|+.+ ..+..+|+.+.+. ...+..-..+. .+++. -+++..+.|+. ...+..||+.+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~- 150 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE- 150 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC-
Confidence 4566667654 2466677765543 11221111111 12222 24566666664 2468888887643
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCc----EEEEEcCCc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGD----VKIIDIRQH 135 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~i~d~~~~ 135 (349)
...+..+... ......+...+++..+.|+.++. +.+||.++.
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 3333322211 11111222235667777776532 456776654
Done!