Query 018858
Match_columns 349
No_of_seqs 516 out of 1296
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 07:09:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 5.6E-49 1.9E-53 335.4 36.0 287 7-349 100-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 2.4E-48 8.4E-53 320.5 35.4 289 6-349 23-320 (321)
3 2ynn_A Coatomer subunit beta'; 100.0 9.1E-48 3.1E-52 315.2 36.5 290 5-348 3-300 (304)
4 1got_B GT-beta; complex (GTP-b 100.0 4.8E-47 1.7E-51 315.8 38.4 289 5-347 45-340 (340)
5 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-47 7.2E-52 318.5 35.3 306 1-349 1-334 (345)
6 4ery_A WD repeat-containing pr 100.0 3.1E-46 1E-50 307.6 36.8 290 6-349 14-311 (312)
7 2pbi_B Guanine nucleotide-bind 100.0 5E-46 1.7E-50 311.0 38.5 292 5-347 54-354 (354)
8 1nr0_A Actin interacting prote 100.0 5.1E-46 1.7E-50 332.8 39.1 325 5-349 180-610 (611)
9 4g56_B MGC81050 protein; prote 100.0 5.8E-47 2E-51 316.9 30.8 288 11-349 38-342 (357)
10 4gqb_B Methylosome protein 50; 100.0 1.9E-46 6.5E-51 311.4 31.2 286 12-349 27-330 (344)
11 3iz6_a 40S ribosomal protein R 100.0 1.7E-46 5.9E-51 317.1 30.0 299 5-349 56-374 (380)
12 1nr0_A Actin interacting prote 100.0 9.2E-45 3.1E-49 324.7 37.3 326 4-349 136-566 (611)
13 2hes_X YDR267CP; beta-propelle 100.0 3.6E-44 1.2E-48 297.1 37.4 294 4-349 3-327 (330)
14 1erj_A Transcriptional repress 100.0 3.5E-44 1.2E-48 304.3 36.3 281 13-348 62-387 (393)
15 3frx_A Guanine nucleotide-bind 100.0 5.6E-44 1.9E-48 294.6 34.6 300 5-348 7-315 (319)
16 2pm7_B Protein transport prote 100.0 1.9E-43 6.5E-48 288.5 33.9 271 8-348 2-283 (297)
17 2ymu_A WD-40 repeat protein; u 100.0 2.7E-43 9.3E-48 314.0 36.9 313 4-347 251-577 (577)
18 4aow_A Guanine nucleotide-bind 100.0 9.8E-43 3.4E-47 290.1 36.5 303 1-349 24-336 (340)
19 2xzm_R RACK1; ribosome, transl 100.0 3.4E-43 1.2E-47 293.0 33.6 306 5-348 11-338 (343)
20 2ymu_A WD-40 repeat protein; u 100.0 2E-42 6.9E-47 308.4 37.5 313 6-349 7-333 (577)
21 3bg1_A Protein SEC13 homolog; 100.0 2.4E-43 8.1E-48 290.4 26.5 272 9-348 7-291 (316)
22 3odt_A Protein DOA1; ubiquitin 100.0 3.2E-41 1.1E-45 277.6 36.4 285 4-349 7-295 (313)
23 1sq9_A Antiviral protein SKI8; 100.0 4.9E-42 1.7E-46 292.0 32.4 290 6-349 7-394 (397)
24 3zwl_B Eukaryotic translation 100.0 2.2E-41 7.6E-46 284.9 35.8 286 6-349 23-345 (369)
25 1gxr_A ESG1, transducin-like e 100.0 2.6E-41 9E-46 281.0 33.8 281 10-348 46-335 (337)
26 1k8k_C P40, ARP2/3 complex 41 100.0 3.5E-41 1.2E-45 284.2 34.0 295 10-348 3-359 (372)
27 3dwl_C Actin-related protein 2 100.0 1.2E-42 4.2E-47 293.7 23.6 296 8-348 4-377 (377)
28 3ei3_B DNA damage-binding prot 100.0 2.5E-41 8.4E-46 286.3 31.6 287 5-349 63-381 (383)
29 3i2n_A WD repeat-containing pr 100.0 6.1E-41 2.1E-45 281.1 32.3 300 8-349 11-352 (357)
30 3jrp_A Fusion protein of prote 100.0 3.1E-41 1E-45 285.2 30.8 274 5-348 1-285 (379)
31 4h5i_A Guanine nucleotide-exch 100.0 8E-41 2.7E-45 280.5 32.1 281 14-349 13-342 (365)
32 1r5m_A SIR4-interacting protei 100.0 9.2E-41 3.1E-45 286.5 32.6 324 7-349 35-424 (425)
33 3dm0_A Maltose-binding peripla 100.0 3.4E-40 1.2E-44 299.7 37.1 298 7-349 374-692 (694)
34 3k26_A Polycomb protein EED; W 100.0 5.6E-41 1.9E-45 282.2 29.1 288 11-349 14-365 (366)
35 1vyh_C Platelet-activating fac 100.0 1.6E-40 5.6E-45 283.2 30.6 268 4-297 139-410 (410)
36 3gre_A Serine/threonine-protei 100.0 1.3E-40 4.5E-45 286.8 29.8 300 4-347 51-437 (437)
37 2pm9_A Protein WEB1, protein t 100.0 2.8E-41 9.6E-46 289.1 25.2 296 13-349 65-413 (416)
38 3f3f_A Nucleoporin SEH1; struc 100.0 4.2E-40 1.4E-44 274.9 31.7 267 7-349 3-336 (351)
39 2pm9_A Protein WEB1, protein t 100.0 4.3E-41 1.5E-45 287.9 26.1 287 14-349 11-336 (416)
40 3ow8_A WD repeat-containing pr 100.0 4.1E-40 1.4E-44 271.4 30.9 244 8-297 73-320 (321)
41 2ynn_A Coatomer subunit beta'; 100.0 4.2E-40 1.4E-44 269.6 30.3 249 49-349 4-258 (304)
42 3vl1_A 26S proteasome regulato 100.0 3.1E-39 1.1E-43 276.8 35.5 318 6-349 89-418 (420)
43 4e54_B DNA damage-binding prot 100.0 2.8E-40 9.7E-45 284.2 28.5 291 6-349 110-429 (435)
44 3mkq_A Coatomer beta'-subunit; 100.0 2E-39 6.9E-44 300.2 36.0 291 5-348 3-300 (814)
45 3frx_A Guanine nucleotide-bind 100.0 2E-39 6.7E-44 267.4 31.8 247 6-299 56-318 (319)
46 3sfz_A APAF-1, apoptotic pepti 100.0 4.1E-39 1.4E-43 310.5 37.9 288 7-348 607-911 (1249)
47 2j04_B YDR362CP, TAU91; beta p 100.0 2.8E-40 9.4E-45 287.6 25.6 298 9-349 128-516 (524)
48 1got_B GT-beta; complex (GTP-b 100.0 5.5E-39 1.9E-43 267.2 31.8 246 4-295 86-340 (340)
49 4gqb_B Methylosome protein 50; 100.0 5.1E-39 1.8E-43 266.8 28.9 242 13-299 80-332 (344)
50 3vl1_A 26S proteasome regulato 100.0 1.3E-39 4.5E-44 279.1 25.6 277 17-349 58-364 (420)
51 4aez_A CDC20, WD repeat-contai 100.0 3.8E-38 1.3E-42 268.2 33.8 253 4-349 122-379 (401)
52 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-38 6.5E-43 264.4 31.2 247 12-300 58-337 (345)
53 4a11_B DNA excision repair pro 100.0 3E-38 1E-42 269.4 32.0 275 4-349 32-364 (408)
54 2hes_X YDR267CP; beta-propelle 100.0 7.1E-38 2.4E-42 259.4 33.2 251 7-298 48-328 (330)
55 1gxr_A ESG1, transducin-like e 100.0 5.6E-38 1.9E-42 260.9 32.4 280 14-349 8-295 (337)
56 1yfq_A Cell cycle arrest prote 100.0 1.8E-38 6.2E-43 264.6 29.0 273 8-342 4-315 (342)
57 2xyi_A Probable histone-bindin 100.0 1.2E-38 3.9E-43 273.7 27.6 261 9-349 122-409 (430)
58 3jro_A Fusion protein of prote 100.0 6.5E-39 2.2E-43 292.9 27.4 272 8-349 2-284 (753)
59 2xzm_R RACK1; ribosome, transl 100.0 2.9E-38 9.8E-43 263.3 28.6 248 6-299 67-341 (343)
60 1pgu_A Actin interacting prote 100.0 3.1E-37 1.1E-41 276.9 37.1 324 4-349 192-613 (615)
61 3mmy_A MRNA export factor; mRN 100.0 4.3E-38 1.5E-42 264.7 29.5 286 4-347 28-343 (368)
62 4gga_A P55CDC, cell division c 100.0 4.6E-37 1.6E-41 263.1 35.9 250 4-348 134-393 (420)
63 3sfz_A APAF-1, apoptotic pepti 100.0 4.3E-38 1.5E-42 303.4 31.0 324 4-349 688-1157(1249)
64 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-37 4.1E-42 288.4 32.6 319 11-348 13-517 (902)
65 2pbi_B Guanine nucleotide-bind 100.0 2.5E-37 8.4E-42 258.4 31.3 247 4-295 95-354 (354)
66 3dw8_B Serine/threonine-protei 100.0 8.4E-38 2.9E-42 270.0 27.6 255 14-349 27-372 (447)
67 3v7d_B Cell division control p 100.0 8.7E-37 3E-41 264.9 33.6 248 4-349 151-420 (464)
68 3v7d_B Cell division control p 100.0 1.1E-36 3.9E-41 264.2 34.2 265 7-349 113-380 (464)
69 2oaj_A Protein SNI1; WD40 repe 100.0 3E-37 1E-41 285.8 31.2 332 4-348 88-659 (902)
70 1p22_A F-BOX/WD-repeat protein 100.0 7.8E-37 2.7E-41 262.9 30.3 252 4-349 162-413 (435)
71 4ery_A WD repeat-containing pr 100.0 6.8E-36 2.3E-40 245.8 34.1 250 4-297 54-311 (312)
72 1erj_A Transcriptional repress 100.0 1.8E-36 6.1E-41 257.0 31.1 241 17-299 125-390 (393)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-35 6.4E-40 255.1 37.4 274 6-349 109-390 (445)
74 4ggc_A P55CDC, cell division c 100.0 1.8E-35 6.1E-40 243.9 35.1 251 4-349 54-314 (318)
75 3iz6_a 40S ribosomal protein R 100.0 1.8E-37 6.2E-42 261.9 23.6 254 4-299 97-376 (380)
76 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-35 5.3E-40 255.6 35.8 278 4-349 148-441 (445)
77 1pgu_A Actin interacting prote 100.0 2.6E-36 8.8E-41 270.9 31.5 281 6-348 54-364 (615)
78 2aq5_A Coronin-1A; WD40 repeat 100.0 8.4E-37 2.9E-41 260.1 26.9 251 6-348 72-340 (402)
79 3dm0_A Maltose-binding peripla 100.0 2.2E-36 7.7E-41 274.7 30.4 249 7-298 422-693 (694)
80 4g56_B MGC81050 protein; prote 100.0 1.9E-36 6.6E-41 253.2 27.2 208 10-299 134-344 (357)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 4.4E-36 1.5E-40 255.7 28.0 245 17-349 36-298 (402)
82 3zwl_B Eukaryotic translation 100.0 1E-34 3.6E-39 244.2 32.5 252 4-299 63-347 (369)
83 4aez_A CDC20, WD repeat-contai 100.0 5E-35 1.7E-39 249.0 29.9 240 12-348 88-334 (401)
84 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-34 4.5E-39 249.0 32.7 231 12-348 130-363 (435)
85 2pm7_B Protein transport prote 100.0 4.1E-35 1.4E-39 239.2 27.2 221 5-298 43-285 (297)
86 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-34 4.8E-39 243.8 30.5 251 7-300 44-363 (372)
87 3dwl_C Actin-related protein 2 100.0 8.6E-36 3E-40 251.8 22.1 249 6-296 46-377 (377)
88 3dw8_B Serine/threonine-protei 100.0 2.9E-35 9.8E-40 254.2 25.2 256 7-347 73-443 (447)
89 3mkq_A Coatomer beta'-subunit; 100.0 5.4E-34 1.8E-38 263.9 34.3 300 4-348 44-384 (814)
90 3bg1_A Protein SEC13 homolog; 100.0 4.1E-35 1.4E-39 241.3 23.2 220 7-298 49-293 (316)
91 3k26_A Polycomb protein EED; W 100.0 1.8E-34 6.3E-39 242.4 27.5 251 5-298 54-366 (366)
92 4aow_A Guanine nucleotide-bind 100.0 9.1E-34 3.1E-38 235.9 31.3 250 6-300 77-339 (340)
93 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.7E-34 1.3E-38 247.2 29.0 249 15-348 4-337 (450)
94 3gre_A Serine/threonine-protei 100.0 9.7E-35 3.3E-39 250.1 24.1 290 23-349 35-358 (437)
95 3lrv_A PRE-mRNA-splicing facto 100.0 4.9E-35 1.7E-39 243.8 20.9 233 23-348 44-290 (343)
96 1sq9_A Antiviral protein SKI8; 100.0 6.5E-34 2.2E-38 241.9 27.8 251 7-299 54-396 (397)
97 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-33 3.6E-38 236.5 27.5 255 4-349 8-270 (355)
98 4a11_B DNA excision repair pro 100.0 4.1E-33 1.4E-37 237.7 31.6 281 13-349 97-404 (408)
99 2j04_B YDR362CP, TAU91; beta p 100.0 5E-35 1.7E-39 254.6 19.4 247 7-299 258-518 (524)
100 4gq1_A NUP37; propeller, trans 100.0 1.8E-34 6.3E-39 244.5 21.9 281 14-347 88-386 (393)
101 4h5i_A Guanine nucleotide-exch 100.0 1.5E-33 5.1E-38 236.3 27.0 203 14-300 132-345 (365)
102 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.1E-33 2.1E-37 239.6 31.2 272 11-348 98-389 (450)
103 2j04_A TAU60, YPL007P, hypothe 100.0 5.6E-34 1.9E-38 242.7 23.4 237 13-348 13-295 (588)
104 3i2n_A WD repeat-containing pr 100.0 1.4E-33 4.8E-38 236.3 25.6 249 13-299 63-354 (357)
105 1r5m_A SIR4-interacting protei 100.0 8.6E-33 2.9E-37 236.9 30.3 260 38-349 25-318 (425)
106 4e54_B DNA damage-binding prot 100.0 1.3E-33 4.5E-38 242.7 24.9 211 51-349 112-326 (435)
107 3bws_A Protein LP49; two-domai 100.0 1.4E-32 4.9E-37 236.3 30.5 284 6-349 114-431 (433)
108 3jrp_A Fusion protein of prote 100.0 7.2E-33 2.5E-37 233.8 26.4 217 49-349 2-239 (379)
109 3f3f_A Nucleoporin SEH1; struc 100.0 3.5E-32 1.2E-36 226.8 29.1 254 6-300 48-339 (351)
110 3ei3_B DNA damage-binding prot 100.0 3.1E-32 1E-36 230.5 26.6 219 43-349 58-281 (383)
111 4gga_A P55CDC, cell division c 100.0 2.6E-31 9E-36 227.4 32.4 238 18-349 108-352 (420)
112 2w18_A PALB2, fancn, partner a 100.0 9.6E-32 3.3E-36 215.4 27.5 265 7-349 27-356 (356)
113 1yfq_A Cell cycle arrest prote 100.0 8.2E-32 2.8E-36 224.3 27.2 245 52-349 5-281 (342)
114 3odt_A Protein DOA1; ubiquitin 100.0 4.1E-31 1.4E-35 217.3 30.0 240 48-349 8-254 (313)
115 2j04_A TAU60, YPL007P, hypothe 100.0 3.8E-32 1.3E-36 231.5 24.0 235 13-338 83-349 (588)
116 2xyi_A Probable histone-bindin 100.0 1.3E-31 4.5E-36 229.8 27.6 229 5-299 171-411 (430)
117 1l0q_A Surface layer protein; 100.0 2.2E-30 7.4E-35 219.8 33.8 246 4-349 21-274 (391)
118 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-31 5.2E-36 222.7 26.1 209 5-300 68-294 (343)
119 4ggc_A P55CDC, cell division c 100.0 2.2E-30 7.4E-35 213.5 31.8 240 18-349 28-272 (318)
120 3vu4_A KMHSV2; beta-propeller 100.0 5.9E-30 2E-34 213.9 30.6 238 17-348 60-334 (355)
121 3mmy_A MRNA export factor; mRN 100.0 4.1E-30 1.4E-34 216.0 29.6 253 43-349 24-303 (368)
122 2w18_A PALB2, fancn, partner a 100.0 8E-31 2.7E-35 210.1 22.2 180 36-296 155-355 (356)
123 3jro_A Fusion protein of prote 100.0 1E-30 3.6E-35 238.8 25.0 214 52-349 3-237 (753)
124 4gq1_A NUP37; propeller, trans 100.0 2.7E-30 9.3E-35 218.9 20.6 228 8-297 129-388 (393)
125 1l0q_A Surface layer protein; 100.0 8.5E-28 2.9E-32 203.8 32.2 224 28-349 2-232 (391)
126 3bws_A Protein LP49; two-domai 100.0 2E-27 6.9E-32 204.2 30.7 280 14-349 59-389 (433)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.4E-28 1.5E-32 206.5 22.5 276 15-349 62-386 (415)
128 1nir_A Nitrite reductase; hemo 100.0 9.2E-27 3.1E-31 204.2 29.1 279 22-349 144-457 (543)
129 1nir_A Nitrite reductase; hemo 100.0 6.3E-26 2.2E-30 198.9 31.6 295 4-348 168-512 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.4E-26 1.5E-30 194.2 29.2 226 5-329 168-408 (415)
131 2ecf_A Dipeptidyl peptidase IV 100.0 7.6E-26 2.6E-30 207.3 27.4 279 15-348 36-411 (741)
132 3u4y_A Uncharacterized protein 99.9 1.5E-24 5.1E-29 179.6 28.3 279 22-349 4-303 (331)
133 1pby_B Quinohemoprotein amine 99.9 1.6E-24 5.6E-29 179.7 28.0 261 29-349 2-309 (337)
134 2ojh_A Uncharacterized protein 99.9 2E-25 6.8E-30 181.6 22.1 239 7-340 33-292 (297)
135 1ri6_A Putative isomerase YBHE 99.9 2.2E-24 7.4E-29 179.4 28.3 268 30-348 7-306 (343)
136 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-25 4.5E-30 205.2 21.4 306 17-348 18-391 (723)
137 1k32_A Tricorn protease; prote 99.9 3.4E-24 1.2E-28 202.9 29.1 317 5-349 42-460 (1045)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1E-23 3.6E-28 192.1 29.7 274 16-349 82-434 (706)
139 3hfq_A Uncharacterized protein 99.9 2.5E-23 8.6E-28 173.4 29.1 254 13-348 37-315 (347)
140 3vgz_A Uncharacterized protein 99.9 6.4E-23 2.2E-27 171.3 31.4 271 15-340 40-334 (353)
141 2oit_A Nucleoporin 214KDA; NH2 99.9 2.1E-24 7.3E-29 184.4 21.2 210 15-300 36-280 (434)
142 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-23 3.7E-28 193.1 25.1 275 16-348 109-457 (741)
143 1k32_A Tricorn protease; prote 99.9 5.9E-23 2E-27 194.4 29.0 271 14-349 294-636 (1045)
144 2ojh_A Uncharacterized protein 99.9 5.7E-23 1.9E-27 167.1 24.4 222 33-349 17-257 (297)
145 1jmx_B Amine dehydrogenase; ox 99.9 1.6E-22 5.6E-27 168.5 27.4 270 20-349 4-324 (349)
146 1xfd_A DIP, dipeptidyl aminope 99.9 4.5E-23 1.5E-27 188.5 25.8 280 4-337 46-427 (723)
147 3u4y_A Uncharacterized protein 99.9 7.4E-22 2.5E-26 163.4 29.7 247 4-299 29-305 (331)
148 1ri6_A Putative isomerase YBHE 99.9 2.4E-22 8.3E-27 167.0 26.6 266 13-329 35-333 (343)
149 2oit_A Nucleoporin 214KDA; NH2 99.9 4.5E-23 1.6E-27 176.2 21.1 217 38-349 23-277 (434)
150 3o4h_A Acylamino-acid-releasin 99.9 4.3E-23 1.5E-27 183.9 20.9 232 15-348 21-274 (582)
151 3scy_A Hypothetical bacterial 99.9 6E-21 2E-25 159.9 31.2 249 14-348 48-335 (361)
152 3pe7_A Oligogalacturonate lyas 99.9 1.1E-21 3.8E-26 166.0 24.3 291 3-348 18-380 (388)
153 2z3z_A Dipeptidyl aminopeptida 99.9 9.2E-22 3.1E-26 179.3 23.4 270 17-348 27-389 (706)
154 1z68_A Fibroblast activation p 99.9 6.5E-22 2.2E-26 180.7 21.4 271 20-348 20-389 (719)
155 1pby_B Quinohemoprotein amine 99.9 2.7E-21 9.4E-26 160.2 21.4 258 4-300 20-312 (337)
156 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.1E-20 3.8E-25 158.4 22.8 253 15-348 39-339 (365)
157 3vgz_A Uncharacterized protein 99.9 1.6E-19 5.5E-24 150.6 28.2 238 4-289 78-335 (353)
158 3fvz_A Peptidyl-glycine alpha- 99.9 8.5E-19 2.9E-23 144.7 29.2 243 15-348 23-320 (329)
159 1q7f_A NHL, brain tumor CG1071 99.9 2.8E-18 9.6E-23 138.8 30.1 238 13-348 27-278 (286)
160 1z68_A Fibroblast activation p 99.9 4.1E-20 1.4E-24 168.8 20.7 292 6-348 47-441 (719)
161 3hfq_A Uncharacterized protein 99.8 1.2E-18 4.2E-23 145.0 26.8 212 8-297 78-316 (347)
162 1jmx_B Amine dehydrogenase; ox 99.8 6.1E-19 2.1E-23 146.8 23.2 134 4-142 30-183 (349)
163 3o4h_A Acylamino-acid-releasin 99.8 1.4E-19 4.7E-24 161.3 20.3 235 6-348 54-313 (582)
164 3e5z_A Putative gluconolactona 99.8 1.2E-17 4.1E-22 135.8 29.4 246 4-344 16-281 (296)
165 4a5s_A Dipeptidyl peptidase 4 99.8 8.3E-19 2.8E-23 160.4 24.6 263 16-299 17-354 (740)
166 3c5m_A Oligogalacturonate lyas 99.8 1.8E-19 6.1E-24 152.8 18.7 286 4-347 19-379 (396)
167 3scy_A Hypothetical bacterial 99.8 1.5E-17 5E-22 139.3 28.8 246 29-348 14-289 (361)
168 2oiz_A Aromatic amine dehydrog 99.8 2.8E-17 9.5E-22 137.2 26.6 269 4-332 40-360 (361)
169 2dg1_A DRP35, lactonase; beta 99.8 2.8E-16 9.7E-21 129.9 31.5 247 7-340 36-300 (333)
170 2oiz_A Aromatic amine dehydrog 99.8 9.1E-17 3.1E-21 134.0 28.5 257 36-349 29-333 (361)
171 3azo_A Aminopeptidase; POP fam 99.8 7.9E-18 2.7E-22 152.3 22.6 250 8-347 16-320 (662)
172 2xdw_A Prolyl endopeptidase; a 99.8 7.5E-17 2.6E-21 146.8 28.3 245 13-348 122-412 (710)
173 3azo_A Aminopeptidase; POP fam 99.8 4.1E-17 1.4E-21 147.6 25.6 251 6-346 58-363 (662)
174 2gop_A Trilobed protease; beta 99.8 1.4E-16 4.7E-21 132.6 26.3 257 15-348 14-329 (347)
175 1rwi_B Serine/threonine-protei 99.8 3.6E-16 1.2E-20 125.3 27.4 238 17-349 25-263 (270)
176 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-16 3.7E-21 134.1 24.8 235 30-348 4-289 (365)
177 4a5s_A Dipeptidyl peptidase 4 99.8 4.5E-17 1.5E-21 148.9 23.0 241 60-348 18-351 (740)
178 3no2_A Uncharacterized protein 99.8 1.4E-15 4.9E-20 121.7 27.0 188 28-302 5-199 (276)
179 2bkl_A Prolyl endopeptidase; m 99.8 1.8E-16 6.1E-21 144.0 22.9 243 13-348 118-395 (695)
180 3dsm_A Uncharacterized protein 99.8 3.9E-15 1.3E-19 122.6 28.6 239 17-349 45-301 (328)
181 2z2n_A Virginiamycin B lyase; 99.7 1.3E-13 4.4E-18 111.9 36.6 277 11-347 10-292 (299)
182 2dg1_A DRP35, lactonase; beta 99.7 8.8E-16 3E-20 127.0 23.7 243 16-348 6-261 (333)
183 3pe7_A Oligogalacturonate lyas 99.7 9.3E-16 3.2E-20 129.6 23.6 213 42-349 14-272 (388)
184 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 2.1E-14 7E-19 117.6 30.6 250 9-348 11-297 (314)
185 1qks_A Cytochrome CD1 nitrite 99.7 4.3E-14 1.5E-18 123.9 33.1 273 28-348 167-475 (567)
186 1q7f_A NHL, brain tumor CG1071 99.7 1.7E-14 5.9E-19 116.5 26.3 200 14-299 75-281 (286)
187 3c5m_A Oligogalacturonate lyas 99.7 8.1E-16 2.8E-20 130.2 18.3 269 42-348 14-327 (396)
188 3hrp_A Uncharacterized protein 99.7 9.5E-14 3.3E-18 117.5 29.3 254 16-349 131-409 (409)
189 1yr2_A Prolyl oligopeptidase; 99.7 1.2E-14 4.2E-19 132.9 25.6 242 14-348 161-439 (741)
190 1qks_A Cytochrome CD1 nitrite 99.7 2.9E-13 9.8E-18 118.7 32.5 300 4-348 186-536 (567)
191 2qc5_A Streptogramin B lactona 99.7 2.3E-12 7.9E-17 104.6 35.4 275 14-348 18-298 (300)
192 3g4e_A Regucalcin; six bladed 99.7 5E-13 1.7E-17 108.4 31.0 238 11-338 8-260 (297)
193 3fvz_A Peptidyl-glycine alpha- 99.7 9.2E-14 3.1E-18 114.5 26.1 211 14-299 89-323 (329)
194 2gop_A Trilobed protease; beta 99.7 2.6E-14 9E-19 118.8 22.4 215 59-348 15-289 (347)
195 2mad_H Methylamine dehydrogena 99.7 1.6E-12 5.4E-17 108.6 31.8 268 23-349 28-349 (373)
196 3sjl_D Methylamine dehydrogena 99.6 8.2E-13 2.8E-17 109.0 25.1 272 21-349 38-362 (386)
197 3dr2_A Exported gluconolactona 99.6 2.5E-12 8.5E-17 104.8 28.0 243 6-345 35-302 (305)
198 2bkl_A Prolyl endopeptidase; m 99.6 1.5E-13 5.3E-18 124.8 22.9 232 23-348 75-347 (695)
199 3dsm_A Uncharacterized protein 99.6 6.7E-13 2.3E-17 109.2 24.4 215 35-348 14-251 (328)
200 3e5z_A Putative gluconolactona 99.6 8.6E-13 2.9E-17 107.1 24.5 203 51-348 20-244 (296)
201 3no2_A Uncharacterized protein 99.6 5.9E-13 2E-17 106.5 23.1 168 4-215 24-197 (276)
202 2xdw_A Prolyl endopeptidase; a 99.6 3.7E-13 1.3E-17 122.6 24.6 231 25-348 81-366 (710)
203 1rwi_B Serine/threonine-protei 99.6 5.7E-13 1.9E-17 106.6 22.2 199 16-299 67-265 (270)
204 2ghs_A AGR_C_1268P; regucalcin 99.6 1.2E-11 4.1E-16 101.7 30.3 229 17-338 50-290 (326)
205 3iuj_A Prolyl endopeptidase; h 99.6 7.4E-13 2.5E-17 120.1 24.5 242 13-348 126-403 (693)
206 2z2n_A Virginiamycin B lyase; 99.6 5.5E-11 1.9E-15 96.3 32.2 237 56-348 12-253 (299)
207 3c75_H MADH, methylamine dehyd 99.6 7.5E-12 2.6E-16 105.1 26.3 266 28-349 84-401 (426)
208 1xip_A Nucleoporin NUP159; bet 99.5 1.8E-13 6.1E-18 113.4 16.0 170 17-241 39-229 (388)
209 2mad_H Methylamine dehydrogena 99.5 3.2E-11 1.1E-15 100.7 29.6 246 4-300 56-352 (373)
210 1xip_A Nucleoporin NUP159; bet 99.5 2.6E-13 8.8E-18 112.4 15.6 184 59-337 38-231 (388)
211 1yr2_A Prolyl oligopeptidase; 99.5 5.4E-12 1.8E-16 115.5 22.1 197 59-348 163-391 (741)
212 3sjl_D Methylamine dehydrogena 99.5 3.3E-11 1.1E-15 99.5 24.5 248 4-300 68-365 (386)
213 2qe8_A Uncharacterized protein 99.5 5.7E-12 2E-16 104.4 19.4 276 7-339 8-310 (343)
214 2qc5_A Streptogramin B lactona 99.5 6.7E-10 2.3E-14 89.9 31.1 236 57-348 18-258 (300)
215 3c75_H MADH, methylamine dehyd 99.5 9.2E-11 3.1E-15 98.6 25.6 246 4-300 108-404 (426)
216 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.8E-10 6.2E-15 94.1 24.4 199 14-299 69-300 (314)
217 2ece_A 462AA long hypothetical 99.4 3.3E-10 1.1E-14 94.3 23.8 240 25-338 93-399 (462)
218 3hrp_A Uncharacterized protein 99.4 7.3E-10 2.5E-14 93.8 25.3 209 59-348 131-352 (409)
219 1mda_H Methylamine dehydrogena 99.3 8.6E-10 2.9E-14 91.2 22.8 255 30-349 34-345 (368)
220 2hz6_A Endoplasmic reticulum t 99.3 7.5E-13 2.6E-17 110.6 4.2 141 28-214 9-150 (369)
221 1mda_H Methylamine dehydrogena 99.3 3E-10 1E-14 93.9 17.5 238 3-299 54-347 (368)
222 3g4e_A Regucalcin; six bladed 99.3 1.4E-08 4.9E-13 82.1 27.1 203 55-348 9-227 (297)
223 1yiq_A Quinohemoprotein alcoho 99.2 5.8E-09 2E-13 94.2 25.4 161 28-217 121-342 (689)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1E-07 3.5E-12 79.9 30.8 260 28-348 53-335 (376)
225 1kb0_A Quinohemoprotein alcoho 99.2 7.5E-09 2.6E-13 93.3 24.7 105 37-142 189-354 (677)
226 1kb0_A Quinohemoprotein alcoho 99.2 4.5E-09 1.5E-13 94.7 22.5 155 28-220 128-353 (677)
227 3iuj_A Prolyl endopeptidase; h 99.2 1.8E-09 6.2E-14 98.0 20.1 197 57-348 127-357 (693)
228 1npe_A Nidogen, entactin; glyc 99.2 3.3E-07 1.1E-11 72.8 30.9 158 16-213 36-198 (267)
229 3hxj_A Pyrrolo-quinoline quino 99.2 4.3E-09 1.5E-13 86.5 20.4 215 29-348 108-322 (330)
230 2ghs_A AGR_C_1268P; regucalcin 99.2 4.2E-08 1.4E-12 80.5 26.0 152 15-212 89-259 (326)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.2 3.6E-08 1.2E-12 82.6 26.2 219 29-347 144-375 (376)
232 2qe8_A Uncharacterized protein 99.2 5.3E-09 1.8E-13 86.5 20.4 238 59-348 17-276 (343)
233 3dr2_A Exported gluconolactona 99.2 1.7E-08 5.7E-13 82.1 22.5 202 51-348 37-265 (305)
234 2hz6_A Endoplasmic reticulum t 99.2 1.6E-11 5.4E-16 102.6 4.3 179 69-348 8-190 (369)
235 3hxj_A Pyrrolo-quinoline quino 99.2 1.7E-09 5.8E-14 88.9 16.3 272 6-347 10-281 (330)
236 2fp8_A Strictosidine synthase; 99.1 2.8E-07 9.6E-12 75.4 28.2 238 16-348 19-311 (322)
237 2iwa_A Glutamine cyclotransfer 99.1 2E-07 6.7E-12 73.0 24.8 217 49-348 10-235 (266)
238 1fwx_A Nitrous oxide reductase 99.1 1.8E-08 6.1E-13 87.0 19.7 261 25-338 99-406 (595)
239 2iwa_A Glutamine cyclotransfer 99.1 1.4E-07 4.8E-12 73.8 23.0 215 5-299 9-238 (266)
240 3qqz_A Putative uncharacterize 99.1 8.3E-07 2.8E-11 69.0 26.3 169 9-213 20-204 (255)
241 3nol_A Glutamine cyclotransfer 99.0 2.4E-07 8.2E-12 71.6 22.5 202 50-337 33-243 (262)
242 2ece_A 462AA long hypothetical 99.0 6.6E-07 2.2E-11 74.7 25.4 200 68-348 93-350 (462)
243 1yiq_A Quinohemoprotein alcoho 99.0 9.3E-08 3.2E-12 86.4 22.1 184 20-242 239-534 (689)
244 3mbr_X Glutamine cyclotransfer 99.0 1E-06 3.4E-11 67.6 24.0 203 50-337 11-222 (243)
245 3nok_A Glutaminyl cyclase; bet 99.0 9E-07 3.1E-11 68.4 23.2 202 50-337 45-253 (268)
246 2p4o_A Hypothetical protein; p 98.9 5.1E-06 1.7E-10 67.3 28.2 237 7-339 24-277 (306)
247 1npe_A Nidogen, entactin; glyc 98.9 4.9E-06 1.7E-10 66.0 27.5 222 30-348 3-236 (267)
248 3nol_A Glutamine cyclotransfer 98.9 4E-07 1.4E-11 70.4 19.9 191 7-244 33-243 (262)
249 1fwx_A Nitrous oxide reductase 98.9 3.6E-07 1.2E-11 79.0 21.3 256 31-348 18-359 (595)
250 3v64_C Agrin; beta propeller, 98.9 1.2E-05 4.2E-10 66.4 29.3 158 17-213 74-234 (349)
251 3tc9_A Hypothetical hydrolase; 98.9 7.5E-06 2.6E-10 69.6 28.0 154 17-213 138-301 (430)
252 3v65_B Low-density lipoprotein 98.9 9.3E-06 3.2E-10 68.1 28.0 159 16-213 116-277 (386)
253 3mbr_X Glutamine cyclotransfer 98.9 2.5E-06 8.7E-11 65.4 21.9 191 7-244 11-222 (243)
254 2xe4_A Oligopeptidase B; hydro 98.8 2.6E-06 8.7E-11 78.0 25.4 114 17-135 175-305 (751)
255 3nok_A Glutaminyl cyclase; bet 98.8 6.9E-07 2.4E-11 69.1 18.1 190 7-244 45-253 (268)
256 4hw6_A Hypothetical protein, I 98.8 1.5E-05 5.2E-10 67.7 27.7 266 17-349 140-432 (433)
257 1kv9_A Type II quinohemoprotei 98.8 8.6E-07 2.9E-11 79.9 21.0 153 29-219 118-339 (668)
258 4a2l_A BT_4663, two-component 98.8 0.00012 3.9E-09 67.8 35.2 272 18-347 175-477 (795)
259 3p5b_L Low density lipoprotein 98.8 5.6E-05 1.9E-09 63.6 31.4 162 13-213 109-277 (400)
260 4a2l_A BT_4663, two-component 98.7 0.00015 5.2E-09 67.0 35.3 236 15-299 356-615 (795)
261 1ijq_A LDL receptor, low-densi 98.7 5.7E-05 2E-09 61.4 29.7 159 16-213 30-195 (316)
262 3qqz_A Putative uncharacterize 98.7 4.8E-05 1.6E-09 59.2 24.8 215 53-347 21-250 (255)
263 3v65_B Low-density lipoprotein 98.7 0.0001 3.4E-09 61.8 28.6 114 38-156 96-211 (386)
264 2ad6_A Methanol dehydrogenase 98.7 1.6E-05 5.5E-10 70.2 24.5 157 28-219 115-341 (571)
265 3v9f_A Two-component system se 98.7 0.00015 5E-09 66.9 31.7 278 16-348 258-566 (781)
266 3v64_C Agrin; beta propeller, 98.6 0.00012 4E-09 60.4 30.1 132 17-156 35-168 (349)
267 1kv9_A Type II quinohemoprotei 98.6 8.7E-06 3E-10 73.4 20.1 183 20-241 234-516 (668)
268 3m0c_C LDL receptor, low-densi 98.5 0.00039 1.3E-08 63.5 30.0 161 14-213 422-589 (791)
269 2p4o_A Hypothetical protein; p 98.5 0.00018 6E-09 58.2 25.2 84 49-138 23-108 (306)
270 2fp8_A Strictosidine synthase; 98.5 5.8E-05 2E-09 61.6 22.2 112 17-134 81-216 (322)
271 1flg_A Protein (quinoprotein e 98.5 4.9E-05 1.7E-09 67.2 23.0 112 30-142 170-363 (582)
272 1w6s_A Methanol dehydrogenase 98.5 8E-05 2.7E-09 65.9 24.0 158 31-219 124-348 (599)
273 3amr_A 3-phytase; beta-propell 98.5 0.0002 6.7E-09 58.0 23.9 143 28-212 40-209 (355)
274 1k3i_A Galactose oxidase precu 98.5 2.1E-05 7.3E-10 70.9 20.5 115 20-136 190-325 (656)
275 3sov_A LRP-6, low-density lipo 98.5 0.00029 1E-08 57.2 29.1 159 16-213 35-197 (318)
276 3v9f_A Two-component system se 98.5 0.00089 3.1E-08 61.7 33.2 274 16-347 211-521 (781)
277 2xe4_A Oligopeptidase B; hydro 98.5 4.7E-05 1.6E-09 69.7 21.9 92 60-156 175-280 (751)
278 2ad6_A Methanol dehydrogenase 98.4 4.3E-05 1.5E-09 67.4 20.9 164 39-241 273-522 (571)
279 1ijq_A LDL receptor, low-densi 98.4 0.00038 1.3E-08 56.6 31.0 115 38-156 10-129 (316)
280 1k3i_A Galactose oxidase precu 98.4 0.00033 1.1E-08 63.1 26.9 119 63-218 190-328 (656)
281 1flg_A Protein (quinoprotein e 98.4 4.9E-05 1.7E-09 67.2 20.2 165 38-241 291-544 (582)
282 1w6s_A Methanol dehydrogenase 98.4 8.3E-05 2.8E-09 65.8 21.4 49 193-241 483-531 (599)
283 3p5b_L Low density lipoprotein 98.4 0.00073 2.5E-08 56.8 29.2 124 30-156 85-211 (400)
284 1n7d_A LDL receptor, low-densi 98.3 7.5E-06 2.6E-10 74.0 13.6 158 17-213 407-571 (699)
285 3m0c_C LDL receptor, low-densi 98.3 0.0019 6.3E-08 59.2 29.3 117 38-156 404-523 (791)
286 3kya_A Putative phosphatase; s 98.3 0.0011 3.9E-08 56.7 27.7 112 18-133 141-277 (496)
287 3sov_A LRP-6, low-density lipo 98.2 0.0014 4.6E-08 53.2 26.9 116 37-156 12-131 (318)
288 2vpj_A Kelch-like protein 12; 98.2 0.0011 3.6E-08 53.4 22.4 105 28-136 15-139 (301)
289 2p9w_A MAL S 1 allergenic prot 98.2 0.0012 4.2E-08 53.0 21.7 168 55-298 9-215 (334)
290 2xbg_A YCF48-like protein; pho 98.2 0.0017 5.7E-08 53.0 30.7 275 15-347 35-319 (327)
291 2p9w_A MAL S 1 allergenic prot 98.1 0.00039 1.3E-08 55.8 17.7 162 15-213 12-215 (334)
292 3s94_A LRP-6, low-density lipo 98.1 0.005 1.7E-07 54.9 25.9 159 16-213 40-202 (619)
293 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0055 1.9E-07 54.7 28.2 158 16-213 37-197 (628)
294 2xn4_A Kelch-like protein 2; s 98.0 0.0029 9.8E-08 50.9 21.4 104 28-136 16-135 (302)
295 1n7d_A LDL receptor, low-densi 98.0 0.00015 5.1E-09 65.6 15.0 117 38-156 386-505 (699)
296 3ii7_A Kelch-like protein 7; p 97.9 0.005 1.7E-07 49.6 23.0 103 29-136 13-129 (306)
297 4hw6_A Hypothetical protein, I 97.9 0.0036 1.2E-07 53.2 20.9 117 14-133 180-303 (433)
298 3tc9_A Hypothetical hydrolase; 97.9 0.001 3.5E-08 56.5 16.7 153 105-347 138-298 (430)
299 1zgk_A Kelch-like ECH-associat 97.8 0.0075 2.6E-07 48.6 21.6 104 28-136 25-148 (308)
300 3pbp_A Nucleoporin NUP82; beta 97.8 0.0011 3.7E-08 54.9 15.3 151 193-345 31-207 (452)
301 2xbg_A YCF48-like protein; pho 97.8 0.0091 3.1E-07 48.6 25.5 134 16-156 122-259 (327)
302 3amr_A 3-phytase; beta-propell 97.8 0.01 3.5E-07 48.1 22.9 197 69-348 39-261 (355)
303 2xzh_A Clathrin heavy chain 1; 97.8 0.01 3.4E-07 47.4 29.6 207 22-301 73-293 (365)
304 3a9g_A Putative uncharacterize 97.7 0.014 5E-07 48.0 25.1 73 58-134 28-114 (354)
305 2vpj_A Kelch-like protein 12; 97.7 0.014 4.7E-07 46.8 20.6 104 28-136 63-186 (301)
306 2xn4_A Kelch-like protein 2; s 97.6 0.014 4.9E-07 46.7 19.7 104 28-136 62-184 (302)
307 4asc_A Kelch repeat and BTB do 97.6 0.017 5.8E-07 46.7 22.9 102 30-136 7-128 (315)
308 2ism_A Putative oxidoreductase 97.6 0.021 7.1E-07 47.0 26.3 103 16-122 31-153 (352)
309 4a0p_A LRP6, LRP-6, low-densit 97.6 0.038 1.3E-06 49.3 28.8 122 30-156 8-132 (628)
310 3s94_A LRP-6, low-density lipo 97.6 0.038 1.3E-06 49.2 32.7 117 16-135 84-203 (619)
311 3kya_A Putative phosphatase; s 97.6 0.032 1.1E-06 47.9 21.6 115 61-212 141-277 (496)
312 3pbp_A Nucleoporin NUP82; beta 97.5 0.025 8.5E-07 47.0 19.1 111 68-213 30-158 (452)
313 3ei3_A DNA damage-binding prot 97.5 0.071 2.4E-06 51.2 27.1 224 39-346 808-1058(1158)
314 3ii7_A Kelch-like protein 7; p 97.5 0.027 9.2E-07 45.2 20.3 104 28-136 56-180 (306)
315 1bpo_A Protein (clathrin); cla 97.5 0.034 1.2E-06 46.4 30.0 207 22-301 72-292 (494)
316 3ei3_A DNA damage-binding prot 97.4 0.11 3.7E-06 50.0 33.0 74 15-88 553-635 (1158)
317 1zgk_A Kelch-like ECH-associat 97.2 0.049 1.7E-06 43.8 18.1 104 28-136 71-195 (308)
318 3sre_A PON1, serum paraoxonase 97.2 0.065 2.2E-06 43.9 24.7 104 18-122 52-183 (355)
319 2xzh_A Clathrin heavy chain 1; 97.2 0.058 2E-06 43.2 24.3 111 36-157 47-162 (365)
320 2be1_A Serine/threonine-protei 97.2 0.011 3.6E-07 48.1 13.3 114 29-142 11-138 (339)
321 2woz_A Kelch repeat and BTB do 97.1 0.071 2.4E-06 43.0 23.2 103 29-136 17-138 (318)
322 4asc_A Kelch repeat and BTB do 97.0 0.085 2.9E-06 42.5 17.2 104 28-136 46-176 (315)
323 3das_A Putative oxidoreductase 97.0 0.11 3.8E-06 42.4 28.1 114 9-123 25-159 (347)
324 3a9g_A Putative uncharacterize 96.9 0.13 4.4E-06 42.3 23.8 104 16-122 29-153 (354)
325 2g8s_A Glucose/sorbosone dehyd 96.8 0.16 5.5E-06 41.7 25.4 62 59-121 18-86 (353)
326 2g8s_A Glucose/sorbosone dehyd 96.8 0.17 5.8E-06 41.6 19.8 103 17-122 19-148 (353)
327 1bpo_A Protein (clathrin); cla 96.8 0.19 6.5E-06 42.0 24.6 224 36-349 46-288 (494)
328 1xi4_A Clathrin heavy chain; a 96.7 0.28 9.5E-06 47.6 20.1 121 23-152 73-204 (1630)
329 2woz_A Kelch repeat and BTB do 96.6 0.21 7.2E-06 40.2 18.3 104 28-136 57-186 (318)
330 2uvk_A YJHT; unknown function, 96.6 0.24 8.1E-06 40.7 20.1 92 28-124 20-128 (357)
331 2zwa_A Leucine carboxyl methyl 96.4 0.55 1.9E-05 42.6 22.0 107 28-136 398-524 (695)
332 3sre_A PON1, serum paraoxonase 96.3 0.34 1.2E-05 39.7 23.0 63 266-338 222-285 (355)
333 1xi4_A Clathrin heavy chain; a 96.2 0.5 1.7E-05 45.9 18.3 113 37-160 47-164 (1630)
334 1cru_A Protein (soluble quinop 96.2 0.53 1.8E-05 40.2 17.9 107 16-123 27-163 (454)
335 2uvk_A YJHT; unknown function, 96.0 0.51 1.7E-05 38.7 19.3 51 28-79 66-128 (357)
336 1tl2_A L10, protein (tachylect 95.8 0.42 1.4E-05 36.0 15.5 29 104-134 41-69 (236)
337 1tl2_A L10, protein (tachylect 95.7 0.19 6.5E-06 37.8 10.8 105 17-128 42-157 (236)
338 3ott_A Two-component system se 95.3 1.7 6E-05 39.8 27.8 113 16-137 63-177 (758)
339 2ism_A Putative oxidoreductase 95.2 1 3.5E-05 36.9 21.0 73 58-134 30-114 (352)
340 3qhy_B Beta-lactamase inhibito 95.2 0.87 3E-05 36.0 19.8 104 17-134 25-129 (282)
341 3b7f_A Glycosyl hydrolase, BNR 94.6 1.7 5.8E-05 36.1 22.2 113 15-129 54-203 (394)
342 2zwa_A Leucine carboxyl methyl 94.1 2.6 8.8E-05 38.2 15.9 107 28-136 452-579 (695)
343 3das_A Putative oxidoreductase 94.0 2.1 7.2E-05 34.9 17.7 81 53-134 26-116 (347)
344 1cru_A Protein (soluble quinop 93.9 2.6 9E-05 35.9 19.5 63 58-121 26-97 (454)
345 3ott_A Two-component system se 93.4 4.6 0.00016 37.0 28.6 119 16-138 373-506 (758)
346 3sbq_A Nitrous-oxide reductase 93.1 4 0.00014 35.5 21.6 92 31-124 73-197 (638)
347 4gq2_M Nucleoporin NUP120; bet 91.9 2.2 7.6E-05 40.3 12.4 35 266-303 237-271 (950)
348 3sbq_A Nitrous-oxide reductase 90.5 5.1 0.00017 35.0 11.9 75 60-134 324-408 (638)
349 1suu_A DNA gyrase subunit A; t 90.2 6.1 0.00021 31.6 28.1 197 28-299 8-232 (312)
350 3s25_A Hypothetical 7-bladed b 89.6 6.7 0.00023 31.2 21.0 117 4-138 45-180 (302)
351 2be1_A Serine/threonine-protei 89.4 4 0.00014 33.1 10.2 27 116-142 11-37 (339)
352 3s25_A Hypothetical 7-bladed b 87.1 10 0.00034 30.2 20.9 146 37-242 36-200 (302)
353 3no0_A DNA gyrase subunit A; D 86.7 9.9 0.00034 29.8 23.4 206 59-345 24-239 (276)
354 3uc1_A DNA gyrase subunit A; D 86.3 12 0.0004 30.2 26.0 75 58-133 94-175 (327)
355 2wg3_C Hedgehog-interacting pr 86.2 15 0.00051 31.3 12.5 107 17-124 15-159 (463)
356 3l6v_A GYRA, DNA gyrase subuni 86.1 13 0.00045 30.6 28.2 106 25-133 5-131 (370)
357 3uc1_A DNA gyrase subunit A; D 86.0 12 0.00042 30.1 23.9 246 29-347 4-276 (327)
358 4fhn_B Nucleoporin NUP120; pro 85.1 1.5 5.1E-05 42.4 6.4 35 266-303 239-273 (1139)
359 2wg3_C Hedgehog-interacting pr 82.9 21 0.00073 30.4 14.7 56 59-114 14-79 (463)
360 4gq2_M Nucleoporin NUP120; bet 80.8 9.6 0.00033 36.0 9.8 38 105-142 237-274 (950)
361 3no0_A DNA gyrase subunit A; D 78.3 22 0.00076 27.8 24.9 123 8-133 13-145 (276)
362 3qhy_B Beta-lactamase inhibito 77.7 23 0.0008 27.7 19.5 64 60-133 25-89 (282)
363 1zi0_A DNA gyrase subunit A; b 76.8 26 0.00091 27.8 28.3 104 28-133 3-127 (307)
364 1wp5_A Topoisomerase IV; broke 75.5 30 0.001 27.8 27.1 104 28-133 5-124 (323)
365 4fhn_B Nucleoporin NUP120; pro 74.3 9.2 0.00032 37.0 7.9 37 106-142 240-276 (1139)
366 3q6k_A 43.2 kDa salivary prote 73.4 38 0.0013 28.0 19.2 85 39-123 124-243 (381)
367 1sqj_A OXG-RCBH, oligoxylogluc 73.0 59 0.002 30.0 25.0 111 15-126 14-144 (789)
368 1wp5_A Topoisomerase IV; broke 72.7 35 0.0012 27.4 22.2 210 68-348 3-223 (323)
369 3b7f_A Glycosyl hydrolase, BNR 72.1 40 0.0014 27.7 23.7 100 29-130 23-143 (394)
370 1suu_A DNA gyrase subunit A; t 68.6 43 0.0015 26.7 24.0 209 67-348 5-229 (312)
371 2cn3_A Xyloglucanase, beta-1,4 67.8 74 0.0025 29.1 25.6 106 17-123 24-152 (737)
372 3kci_A Probable E3 ubiquitin-p 62.1 66 0.0022 26.5 24.6 77 265-347 211-290 (389)
373 3f7f_A Nucleoporin NUP120; nuc 58.5 17 0.00058 32.9 5.7 36 105-142 223-258 (729)
374 3f7f_A Nucleoporin NUP120; nuc 58.1 16 0.00056 32.9 5.5 37 17-56 223-259 (729)
375 3zwu_A Alkaline phosphatase PH 56.5 55 0.0019 28.9 8.5 57 19-76 479-548 (592)
376 4a9v_A PHOX; hydrolase, beta-p 53.6 68 0.0023 28.2 8.4 60 17-77 477-549 (592)
377 3q6k_A 43.2 kDa salivary prote 48.6 1.1E+02 0.0039 25.2 17.3 26 323-348 279-304 (381)
378 3zwu_A Alkaline phosphatase PH 45.6 88 0.003 27.7 8.1 51 106-156 478-540 (592)
379 3l6v_A GYRA, DNA gyrase subuni 42.9 1.4E+02 0.0047 24.5 22.2 66 66-132 3-74 (370)
380 3kci_A Probable E3 ubiquitin-p 41.7 1.4E+02 0.005 24.4 30.7 103 29-133 63-186 (389)
381 3al9_A Plexin-A2; beta-propell 37.5 1.3E+02 0.0045 26.2 7.9 70 60-129 401-476 (539)
382 4a9v_A PHOX; hydrolase, beta-p 37.4 2E+02 0.0069 25.4 8.8 53 104-156 476-540 (592)
383 1q47_A Semaphorin 3A; beta pro 34.5 1.2E+02 0.0041 26.1 7.1 68 17-84 405-487 (495)
384 3al9_A Plexin-A2; beta-propell 32.8 1.3E+02 0.0043 26.3 7.0 68 17-84 401-476 (539)
385 1zvt_A Topoisomerase IV subuni 32.0 1.7E+02 0.0059 22.4 15.5 102 30-133 4-113 (256)
386 4gz8_A Semaphorin-3A; multi-do 31.6 2.9E+02 0.0099 24.9 10.1 56 29-84 430-495 (667)
387 4hvt_A Ritya.17583.B, post-pro 30.9 3.1E+02 0.011 25.0 23.0 32 264-299 349-382 (711)
388 3nvq_A Semaphorin-7A; beta-pro 29.3 2.4E+02 0.0081 25.0 8.1 56 29-84 381-444 (590)
389 4gz8_A Semaphorin-3A; multi-do 27.9 2.9E+02 0.0098 25.0 8.5 27 264-293 469-495 (667)
390 1q47_A Semaphorin 3A; beta pro 27.4 2.3E+02 0.008 24.3 7.7 69 61-129 406-487 (495)
391 4d9s_A UVB-resistance protein 25.4 2.9E+02 0.0098 22.8 30.6 75 265-347 277-354 (406)
392 1olz_A Semaphorin 4D; developm 24.0 2.8E+02 0.0095 25.0 7.8 57 72-129 417-477 (663)
393 1sqj_A OXG-RCBH, oligoxylogluc 22.4 4.6E+02 0.016 24.1 20.4 107 16-124 64-190 (789)
394 3oky_B Putative uncharacterize 21.2 4.2E+02 0.014 23.3 9.5 68 17-84 404-495 (565)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.6e-49 Score=335.42 Aligned_cols=287 Identities=16% Similarity=0.176 Sum_probs=251.7
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
....+.+|.++|++++|+|+ +.+|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp CSCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred ceEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 36678999999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
+.++ ..+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+. +|...+.++.|+|
T Consensus 179 ~~~~---~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~---------- 244 (410)
T 1vyh_C 179 FQGF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQ---------- 244 (410)
T ss_dssp TTSS---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECT----------
T ss_pred CCCC---ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEEECC----------
Confidence 9865 4456677788999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc----------
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV---------- 236 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 236 (349)
++.+|++|+.|+.|++||++++.....+.. ....+.+++|+|+
T Consensus 245 --------------------------~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~ 297 (410)
T 1vyh_C 245 --------------------------DGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEAT 297 (410)
T ss_dssp --------------------------TSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCC
T ss_pred --------------------------CCCEEEEEcCCCeEEEEECCCCceeeEecC-CCceEEEEEEcCcccccchhhhc
Confidence 899999999999999999998776655433 4567888999986
Q ss_pred ----------ccEEEEeeeeeecC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcce
Q 018858 237 ----------NIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 302 (349)
Q Consensus 237 ----------~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 302 (349)
+.++++ ++.|+.+ .....++..+.+|...|+++.|+ |++++|++|+.|+.|++||+.++
T Consensus 298 ~~~~~~~~~~g~~l~s-gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~---~~g~~l~s~s~D~~i~vwd~~~~--- 370 (410)
T 1vyh_C 298 GSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH---SGGKFILSCADDKTLRVWDYKNK--- 370 (410)
T ss_dssp SCC-------CCEEEE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC---SSSSCEEEEETTTEEEEECCTTS---
T ss_pred cccccccCCCCCEEEE-EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc---CCCCEEEEEeCCCeEEEEECCCC---
Confidence 456663 4433322 22345667888999999999999 89999999999999999999887
Q ss_pred ecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 303 QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+..+.+|...|++++|+| ++.+|++++.||.|++|+++
T Consensus 371 ------~~~~~~~~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 371 ------RCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ------CCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred ------ceEEEEcCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Confidence 56667789999999999988 78899999999999999974
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-48 Score=320.52 Aligned_cols=289 Identities=16% Similarity=0.151 Sum_probs=248.0
Q ss_pred CCCeeeeCCceeeeEEEEecC---CCceEEEeCCCCcEEEEECCCCcE--EEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 6 AKPRRLRGHKATATCCIASRD---RPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~---~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
...+.+++|.+.|++++|+|+ ++.+|++|+.|++|++|++..++. ...+.+|...|.+++|++++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 345677899999999999874 357899999999999999987654 457889999999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
.|++||+++++. +..+..+...+.+++|+|++++|++++.+|.|++||+++++....+. .+...+.+++|+|
T Consensus 103 ~i~lWd~~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~sp---- 174 (321)
T 3ow8_A 103 HIRLWDLENGKQ---IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSP---- 174 (321)
T ss_dssp EEEEEETTTTEE---EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECT----
T ss_pred cEEEEECCCCCE---EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-CCCceEEEEEECC----
Confidence 999999997643 44455566788999999999999999999999999999998888888 7888999999999
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++++|++|+.||.|++||+++++....+.. ....+.+++|+|+++++
T Consensus 175 --------------------------------dg~~lasg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~~~l 221 (321)
T 3ow8_A 175 --------------------------------DGKYLASGAIDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDSQLL 221 (321)
T ss_dssp --------------------------------TSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCCCEEEECTTSCEE
T ss_pred --------------------------------CCCEEEEEcCCCeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCCCEE
Confidence 899999999999999999998877665543 35678999999999999
Q ss_pred EEeeeeeecC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 241 AEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 241 ~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
++ +..|+.+ .........+.+|...|.+++|+ |++++|++++.|+.|++||+.++ ..+..+.+
T Consensus 222 ~s-~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s---p~~~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~ 288 (321)
T 3ow8_A 222 VT-ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC---PDDTHFVSSSSDKSVKVWDVGTR---------TCVHTFFD 288 (321)
T ss_dssp EE-ECTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTT---------EEEEEECC
T ss_pred EE-EcCCCeEEEEECCCcceeEEEcCCCCceEEEEEC---CCCCEEEEEeCCCcEEEEeCCCC---------EEEEEEcC
Confidence 85 3333322 22345567788999999999999 89999999999999999999987 66777889
Q ss_pred cccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 317 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|...|.+++|+| ++++|++++.||.|++||++
T Consensus 289 h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 289 HQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTCCEEEEECC
T ss_pred CCCcEEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 999999999988 88899999999999999975
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.1e-48 Score=315.16 Aligned_cols=290 Identities=15% Similarity=0.134 Sum_probs=245.5
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+..++|++|.+.|++++|+|+ +++|++++.||.|++||+++++.+..+..|..+|.+++|+|++++|++|+.|+.|++
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 4678899999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
||+++++ .+..+.+|...|.+++|+|++++|++|+.|+.|++||++++ .....+. +|...|.+++|+|+
T Consensus 82 wd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~------ 151 (304)
T 2ynn_A 82 FNYNTGE---KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPK------ 151 (304)
T ss_dssp EETTTCC---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTT------
T ss_pred EECCCCc---EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEECCC------
Confidence 9999764 44556678899999999999999999999999999999977 5556677 89999999999994
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec--cccEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK--VNIRDA 241 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 241 (349)
++.+|++|+.|+.|++||++...............+..+.++| ++.+++
T Consensus 152 -----------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 152 -----------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp -----------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred -----------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence 5789999999999999999876655544444556677778876 677777
Q ss_pred Eeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 242 EMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 242 ~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
+ ++.|+. ......++..+.+|...|.++.|+ |++++|++|+.||.|++||+.++ +.+..+..|
T Consensus 203 s-~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~---p~~~~l~s~s~Dg~i~iWd~~~~---------~~~~~~~~~ 269 (304)
T 2ynn_A 203 T-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH---PTLPIIISGSEDGTLKIWNSSTY---------KVEKTLNVG 269 (304)
T ss_dssp E-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC---SSSSEEEEEETTSCEEEEETTTC---------CEEEEECCS
T ss_pred E-EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEEC---CCCCEEEEEcCCCeEEEEECCCC---------ceeeeccCC
Confidence 4 333332 222446677889999999999999 89999999999999999999997 667777889
Q ss_pred ccceEEEEeecCCCCc-EEEeeCCCeEEEeeC
Q 018858 318 NKKVNWLCTTPTESEN-LVVCDTSKVVKVYSI 348 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~-l~~~~~dg~i~iw~~ 348 (349)
...+.+++++|.+++. +++++. ..+.+|++
T Consensus 270 ~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~ 300 (304)
T 2ynn_A 270 LERSWCIATHPTGRKNYIASGFD-NGFTVLSL 300 (304)
T ss_dssp SSSEEEEEECTTCGGGCEEEEET-TEEEEEEC
T ss_pred CccEEEEEECCCCCceEEEEecC-CceEEEEe
Confidence 9999999999965554 555555 45667765
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.8e-47 Score=315.77 Aligned_cols=289 Identities=13% Similarity=0.135 Sum_probs=247.3
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
....++|++|.+.|++++|+|+ +++|++|+.||.|++||..+++.+..+..|...|.+++|+|++++|++++.|+.|++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred chhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3456789999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCc-ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPAS-WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|++.+... ......+.+|...+.++.|++++. +++++.|+.|++||+++++.+..+. +|...|.+++|+|
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~------- 194 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAP------- 194 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECT-------
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECC-------
Confidence 99986532 234455677889999999998765 8899999999999999999999999 8999999999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++++|++|+.||.|++||++++.....+.. ....+..++|+|+++++++
T Consensus 195 -----------------------------~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s- 243 (340)
T 1got_B 195 -----------------------------DTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFAT- 243 (340)
T ss_dssp -----------------------------TSSEEEEEETTSCEEEEETTTCSEEEEECC-CSSCEEEEEECTTSSEEEE-
T ss_pred -----------------------------CCCEEEEEeCCCcEEEEECCCCeeEEEEcC-CcCCEEEEEEcCCCCEEEE-
Confidence 789999999999999999998776655543 3567899999999999985
Q ss_pred eeeeecCc----eeeeeeeeec--CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 244 EILDQSGG----KRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 244 ~~~~~~~~----~~~~~~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
++.|+.+. .....+..+. .+...|.+++|+ |++++|++|+.|+.|++||+.+. ..+..+.+|
T Consensus 244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~g~~d~~i~vwd~~~~---------~~~~~~~~h 311 (340)
T 1got_B 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS---KSGRLLLAGYDDFNCNVWDALKA---------DRAGVLAGH 311 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTC---------CEEEEEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC---CCCCEEEEECCCCeEEEEEcccC---------cEeeEeecC
Confidence 33333221 1112222332 334579999999 89999999999999999999887 566677899
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
...|.+++|+| ++.+|++++.||.|++||
T Consensus 312 ~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 312 DNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence 99999999988 888999999999999997
No 5
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-47 Score=318.49 Aligned_cols=306 Identities=14% Similarity=0.127 Sum_probs=244.1
Q ss_pred CCccCCCCeeeeCCce-eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE---EeecCCCCeEEEEEecCCCEEEEE
Q 018858 1 MTDAEAKPRRLRGHKA-TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL---VTDVGNGPVTSLCFKSGNEDIIYV 76 (349)
Q Consensus 1 m~~~~~~~~~l~~h~~-~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~ 76 (349)
|.+..+++++|++|.+ .|++++|+|+ +++|++|+.|++|++||+.+++... ...+|...|.+++|+|++++|+++
T Consensus 1 ~~~~~~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 79 (345)
T 3fm0_A 1 MKDSLVLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79 (345)
T ss_dssp ---CEEEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE
T ss_pred CCccEEEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE
Confidence 6677788999999998 9999999998 8999999999999999998776432 236799999999999999999999
Q ss_pred eCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc---eEeceeccccccceeEEE
Q 018858 77 SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSICSSVQ 153 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~ 153 (349)
+.|+.+++|++..+. ...+..+.+|...|.+++|+|++++|++|+.|+.|++||++++ +++..+. .|...|.+++
T Consensus 80 s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~ 157 (345)
T 3fm0_A 80 SFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVV 157 (345)
T ss_dssp ETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEE
T ss_pred ECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEE
Confidence 999999999988643 3455677889999999999999999999999999999999865 3456677 8899999999
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee-ecCCCCCCccceee
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQS 232 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~ 232 (349)
|+| ++++|++++.|+.|++||.+.+.... .........+..++
T Consensus 158 ~~p------------------------------------~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~ 201 (345)
T 3fm0_A 158 WHP------------------------------------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201 (345)
T ss_dssp ECS------------------------------------SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred ECC------------------------------------CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEE
Confidence 999 78999999999999999998765332 22233457899999
Q ss_pred eeccccEEEEeeeeeecCc-------------------eeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 233 TSKVNIRDAEMEILDQSGG-------------------KRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
|+|+|+++++ ++.|+.+. ....++..+.+ |...|++++|+ |++..|++++.|+.|+
T Consensus 202 ~sp~g~~l~s-~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~~~l~s~~~d~~i~ 277 (345)
T 3fm0_A 202 FDPSGQRLAS-CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC---QLTGALATACGDDAIR 277 (345)
T ss_dssp ECTTSSEEEE-EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC---TTTCCEEEEETTSCEE
T ss_pred ECCCCCEEEE-EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe---cCCCEEEEEeCCCeEE
Confidence 9999999985 33332211 11233444554 88899999999 8999999999999999
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+|+....................+|...|++++|+|.++.+|++++.||.|++|+++
T Consensus 278 vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 278 VFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp EEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred EEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 999876532111000012233468999999999999555689999999999999964
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.1e-46 Score=307.59 Aligned_cols=290 Identities=19% Similarity=0.237 Sum_probs=248.8
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
....++.+|.+.|++++|+|+ +++|++++.||.|++|+..+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 456778899999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|+++++ .+..+..|...|.+++|+|++++|++|+.|+.|++||+++++.+..+. .|...+.+++|+|
T Consensus 93 d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--------- 159 (312)
T 4ery_A 93 DVSSGK---CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNR--------- 159 (312)
T ss_dssp ETTTCC---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECT---------
T ss_pred ECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcC---------
Confidence 999764 445566788899999999999999999999999999999999998998 8999999999999
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
++++|++++.||.|++||+++++............+..++|+|+++++++.+
T Consensus 160 ---------------------------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 211 (312)
T 4ery_A 160 ---------------------------DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT- 211 (312)
T ss_dssp ---------------------------TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-
T ss_pred ---------------------------CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-
Confidence 7899999999999999999988877766666667888999999999998632
Q ss_pred eeec----CceeeeeeeeecCCCcceEE--EEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc
Q 018858 246 LDQS----GGKRLHLDYSVGGHTAAASC--VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK 319 (349)
Q Consensus 246 ~~~~----~~~~~~~~~~~~~h~~~i~~--i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 319 (349)
.++. .....+.+..+.+|...+.. ..+++ +++.+|++|+.||.|++||+.++ ..+..+.+|..
T Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~ 280 (312)
T 4ery_A 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV--TGGKWIVSGSEDNLVYIWNLQTK---------EIVQKLQGHTD 280 (312)
T ss_dssp TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC--SSSCEEEECCTTSCEEEEETTTC---------CEEEEECCCSS
T ss_pred CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe--CCCcEEEEECCCCEEEEEECCCc---------hhhhhhhccCC
Confidence 2222 12233455666677654332 23332 67899999999999999999987 67778889999
Q ss_pred ceEEEEeecCCCCcEEEee--CCCeEEEeeCC
Q 018858 320 KVNWLCTTPTESENLVVCD--TSKVVKVYSIS 349 (349)
Q Consensus 320 ~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~ 349 (349)
.|.+++|+| ++.+|++++ .|+.|++|+..
T Consensus 281 ~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 281 VVISTACHP-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred cEEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence 999999998 777899886 69999999863
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5e-46 Score=311.02 Aligned_cols=292 Identities=16% Similarity=0.159 Sum_probs=247.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+..++|++|.+.|++++|+|+ +++|++|+.||+|++||..+++....+..|...|.+++|+|++.++++++.|+.+++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 3456789999999999999998 899999999999999999999998899999999999999999999999999999999
Q ss_pred EEccCCC---cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 85 FDVHMPA---SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 85 wd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
|++.... .......+..|...|.+++|+|++..|++++.|+.|++||+++++.+..+. +|...|.+++|+|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~---- 207 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPS---- 207 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCC----
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeC----
Confidence 9987532 123344556788999999999999999999999999999999999999999 99999999999882
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
+++++|++|+.||.|++||+++++....+.. ....+.+++|+|++..++
T Consensus 208 ------------------------------~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~ 256 (354)
T 2pbi_B 208 ------------------------------ETGNTFVSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDAFA 256 (354)
T ss_dssp ------------------------------SSCCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEE
T ss_pred ------------------------------CCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCeEEEEEeCCCCEEE
Confidence 1468999999999999999998877665543 456789999999999998
Q ss_pred EeeeeeecCc----eeeeeeeeec--CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 242 EMEILDQSGG----KRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 242 ~~~~~~~~~~----~~~~~~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
+ ++.|..+. ........+. .+...+.++.|+ |++++|++|+.|+.|++||+.++ ..+..+.
T Consensus 257 s-~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s---~~g~~l~~g~~d~~i~vwd~~~~---------~~~~~l~ 323 (354)
T 2pbi_B 257 S-GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS---LSGRLLFAGYNDYTINVWDVLKG---------SRVSILF 323 (354)
T ss_dssp E-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTC---------SEEEEEC
T ss_pred E-EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe---CCCCEEEEEECCCcEEEEECCCC---------ceEEEEE
Confidence 5 33333221 1112222232 234578999999 89999999999999999999887 5666778
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+|...|++++|+| ++++|++++.||.|++|+
T Consensus 324 ~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 GHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred CCCCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence 9999999999988 889999999999999996
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.1e-46 Score=332.79 Aligned_cols=325 Identities=16% Similarity=0.143 Sum_probs=254.1
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-------cCCCCeEEEEEecCCCEEEEEe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-------VGNGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~ 77 (349)
.+..+.+.+|.+.|++++|+|+ +++|++++.|++|++||+.+++.+..+. +|...|.+++|+|++++|++++
T Consensus 180 ~~~~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 180 FKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp BEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred CeEeeeeccccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe
Confidence 4556788999999999999998 8999999999999999999999888874 7999999999999999999999
Q ss_pred CCCeEEEEEccCCCcccc----------------------------------------eeeccCcccceEEEEEccCCCE
Q 018858 78 SGKEVKSFDVHMPASWRP----------------------------------------LESYNYNKEEINQIVCNPKSSF 117 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~----------------------------------------~~~~~~~~~~v~~~~~~~~~~~ 117 (349)
.|++|++||+++++.... ...+.+|...|++++|+|++++
T Consensus 259 ~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~ 338 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT 338 (611)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE
Confidence 999999999987643221 1234578889999999999999
Q ss_pred EEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC-CCCCC-----------------------------
Q 018858 118 LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG-LPENN----------------------------- 167 (349)
Q Consensus 118 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~----------------------------- 167 (349)
|++++.|+.|++||+.+++....+...|...+.+++|++++.... ..+..
T Consensus 339 l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 999999999999999998877666337888999999987653221 11100
Q ss_pred -CCCc--------------------cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC
Q 018858 168 -GNAG--------------------QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 226 (349)
Q Consensus 168 -~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 226 (349)
.+.+ .......+.+++++| ++++|++|+.|+.|++||+...............
T Consensus 419 ~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp------dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~ 492 (611)
T 1nr0_A 419 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN------DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 492 (611)
T ss_dssp ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT------TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSS
T ss_pred EeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC------CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCC
Confidence 0000 000123456778888 9999999999999999999876432221234567
Q ss_pred ccceeeeeccccEEEEeeeeeecCc----ee-eeeeee--ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQSGG----KR-LHLDYS--VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~--~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+.+++|+|+|+++++. ..+..+. .. .++... +.+|...|++++|+ |++++|++|+.|++|++||+..+
T Consensus 493 ~v~~v~fspdg~~las~-s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs---pdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 493 EITSVAFSNNGAFLVAT-DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS---PDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp CEEEEEECTTSSEEEEE-ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTCT
T ss_pred ceEEEEECCCCCEEEEE-cCCCCEEEEEcCCCCceeeeeeeeecccceeEEEEC---CCCCEEEEEECCCcEEEEECCCc
Confidence 89999999999999853 3222211 11 222222 34499999999999 99999999999999999999876
Q ss_pred cceecccccceeeecccc-ccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 300 QGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.. ..+....+| ...|++++|+| +++ |++++.|++|++|+++
T Consensus 569 ~~-------~~~~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 569 SD-------HPIIIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TS-------CCEEETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred cc-------ccchhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 31 122456788 89999999988 776 9999999999999974
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.8e-47 Score=316.93 Aligned_cols=288 Identities=14% Similarity=0.109 Sum_probs=228.6
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCC------CCcEEEEECCCCcE----EEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGE------DGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~------dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
...|+..|++++|+|+ |++|++|+. |+.|++|+..++.. ......|...|.+++|+|++. +++++.||
T Consensus 38 p~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 38 PACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp --CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred cccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 4569999999999999 899999997 77899999876653 233456888999999999876 55678899
Q ss_pred eEEEEEccCCCccccee-eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 81 EVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
.|++||+.+++...... ...+|...|++++|+|++++|++|+.|+.|++||+++++++..+. .|...|.+++|+|+
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~-- 192 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPG-- 192 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTT--
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEccC--
Confidence 99999998765433222 344688899999999999999999999999999999999999999 99999999999993
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC-CCCCCccceeeeecccc
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK-STTKPLKGSQSTSKVNI 238 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 238 (349)
...++++++.||.|++||+++++...... ......+.+++|+|++.
T Consensus 193 ---------------------------------~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 193 ---------------------------------KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp ---------------------------------CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred ---------------------------------CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence 34578999999999999999877655443 34456788999999865
Q ss_pred EEEEeeeeeecC----ceeeeeeeeecCCCcceEEEEEeeecCCc-cEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 239 RDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 239 ~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
.+++.+..+..+ ....+....+.+|...|++++|+ |++ ++|++|+.|++|+|||++++ +++ .
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~s---p~~~~~lasgs~D~~i~iwd~~~~---------~~~-~ 306 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS---YHSSPFLASISEDCTVAVLDADFS---------EVF-R 306 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEEC---SSSSCCEEEEETTSCEEEECTTSC---------EEE-E
T ss_pred ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEc---CCCCCEEEEEeCCCEEEEEECCCC---------cEe-E
Confidence 544455544432 22445667788999999999999 666 68999999999999999986 444 3
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+|.+.|++++|+|.++++|++++.||+|++|+++
T Consensus 307 ~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 307 DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 458999999999998788899999999999999984
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.9e-46 Score=311.41 Aligned_cols=286 Identities=12% Similarity=0.060 Sum_probs=227.8
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-----------CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-----------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
..|...|.+++|+|+ |++|++++ |+++++||... .........+..+|.+++|+|++ .|++++.||
T Consensus 27 ~~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 27 ACMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp SSCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred ccccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 457788999999999 88888887 67888886310 01111222356789999999985 688999999
Q ss_pred eEEEEEccCCCccccee-eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 81 EVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
.|++||+++++...... ...+|...|++++|+|++++|++|+.|+.|++||+++++++..+. +|...|.+++|+|+
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~-~h~~~V~~~~~~~~-- 180 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-AHAAQVTCVAASPH-- 180 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSS--
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-CcCCceEEEEecCC--
Confidence 99999999876544433 345788999999999999999999999999999999999999999 99999999999993
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC-CCCCccceeeeecccc
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNI 238 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 238 (349)
...+|++++.|+.|++||+++++....... .....+.+++|+|++.
T Consensus 181 ---------------------------------~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (344)
T 4gqb_B 181 ---------------------------------KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS 227 (344)
T ss_dssp ---------------------------------CTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT
T ss_pred ---------------------------------CCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC
Confidence 346889999999999999998877665543 3345678899999665
Q ss_pred EEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCc-cEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 239 RDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 239 ~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
.+++.+..|+. .....+++..+.+|...|++++|+ |++ ++|++|+.|++|+|||+.++ ++ ..
T Consensus 228 ~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fs---p~g~~~lasgs~D~~i~vwd~~~~---------~~-~~ 294 (344)
T 4gqb_B 228 EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFS---PHSVPFLASLSEDCSLAVLDSSLS---------EL-FR 294 (344)
T ss_dssp TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEEC---SSSSCCEEEEETTSCEEEECTTCC---------EE-EE
T ss_pred cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEc---cCCCeEEEEEeCCCeEEEEECCCC---------cE-EE
Confidence 44445544433 233456778889999999999999 787 68999999999999999886 33 35
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+|.+.|++++|+|.+..+|++++.|++|++|+++
T Consensus 295 ~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 295 SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 678999999999999544567799999999999974
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-46 Score=317.10 Aligned_cols=299 Identities=14% Similarity=0.115 Sum_probs=241.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
....++|++|.+.|++++|+|+ +++|++|+.||+|++||+.+++....+..|...|.+++|+|++++|++|+.|+.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eEEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 3456789999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC----cccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceec----cccccceeEEEEc
Q 018858 85 FDVHMPA----SWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLR----AGHSSICSSVQFI 155 (349)
Q Consensus 85 wd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~ 155 (349)
|++.+.. .......+.+|...+.++.|.|++ ..|++|+.|+.|++||+++++.+..+. .+|...+.+++|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9997532 123345567888999999999974 679999999999999999998877662 2688889999997
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
|. ++++|++|+.||.|++||++...............+.+++|+|
T Consensus 215 ~~-----------------------------------~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p 259 (380)
T 3iz6_a 215 SL-----------------------------------NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259 (380)
T ss_dssp SS-----------------------------------SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT
T ss_pred cC-----------------------------------CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec
Confidence 73 6889999999999999999854333323334567899999999
Q ss_pred cccEEEEeeeeeecCc----eeeeeeeeecC-------CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec
Q 018858 236 VNIRDAEMEILDQSGG----KRLHLDYSVGG-------HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 304 (349)
+++++++ ++.|+.+. .....+..+.. +...|++++|+ |+|++|++|+.||.|++||+..++...
T Consensus 260 ~~~~l~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~g~~dg~i~vwd~~~~~~~~- 334 (380)
T 3iz6_a 260 DGQRFGT-GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS---ISGRLLFAGYSNGDCYVWDTLLAEMVL- 334 (380)
T ss_dssp TSSEEEE-ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC---SSSSEEEEECTTSCEEEEETTTCCEEE-
T ss_pred CCCeEEE-EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC---CCCCEEEEEECCCCEEEEECCCCceEE-
Confidence 9999985 33333221 12223333332 22358999999 899999999999999999998874221
Q ss_pred ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 305 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.....+|.+.|++++|+| ++++|++|+.||.|++|+++
T Consensus 335 ----~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 335 ----NLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp ----EECCSCSSCCCCCCEEEECS-SSSEEEEECTTSCEEEEECC
T ss_pred ----EEecccCCCCCceEEEEECC-CCCEEEEeeCCCCEEEEecC
Confidence 11112257999999999988 88999999999999999974
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.2e-45 Score=324.66 Aligned_cols=326 Identities=13% Similarity=0.088 Sum_probs=239.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++..+.+.+|.+.|++++|+|++...|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 136 ~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 136 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence 45567788999999999999998434699999999999999999888899999999999999999999999999999999
Q ss_pred EEEccCCCcccceee----ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc--cccceeEEEEccC
Q 018858 84 SFDVHMPASWRPLES----YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG--HSSICSSVQFIPW 157 (349)
Q Consensus 84 iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~ 157 (349)
+||+.+++....+.. ..+|...|.+++|+|++++|++++.|+.|++||+++++++..+... +......+.|..+
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence 999987654333211 1168899999999999999999999999999999998877766511 1223344444221
Q ss_pred CCCCCCCCCC-----CCCcc-----ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC-----
Q 018858 158 KPWEGLPENN-----GNAGQ-----CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS----- 222 (349)
Q Consensus 158 ~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----- 222 (349)
....+..++. ...+. .-+...+.+++++| ++++|++++.|+.|++||+.+++.......
T Consensus 296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp------dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~ 369 (611)
T 1nr0_A 296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA------DGKTLFSADAEGHINSWDISTGISNRVFPDVHATM 369 (611)
T ss_dssp CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC------CCCEEEEEeCCCcEEEEECCCCceeeecccCCcce
Confidence 1111111111 00000 11334577777777 788888888888888888876543221100
Q ss_pred ----------------------------------------------------------------------------CCCC
Q 018858 223 ----------------------------------------------------------------------------TTKP 226 (349)
Q Consensus 223 ----------------------------------------------------------------------------~~~~ 226 (349)
....
T Consensus 370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~ 449 (611)
T 1nr0_A 370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 449 (611)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSS
T ss_pred EEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCC
Confidence 0012
Q ss_pred ccceeeeeccccEEEEeeeeeecCce------eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQSGGK------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.+.+++|+|||+++++ ++.|..+.. ....... .+|...|++++|+ |++++|++++.|++|++||+.+..
T Consensus 450 ~v~~va~spdg~~las-gs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fs---pdg~~las~s~d~~v~~w~~~~~~ 524 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAV-GGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFS---NNGAFLVATDQSRKVIPYSVANNF 524 (611)
T ss_dssp CEEEEEECTTSCEEEE-EETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEEC---TTSSEEEEEETTSCEEEEEGGGTT
T ss_pred CceEEEEeCCCCEEEE-eCCCCeEEEEEccCCceeeeec-cCCCCceEEEEEC---CCCCEEEEEcCCCCEEEEEcCCCC
Confidence 3456788999998885 333322111 1122233 5789999999999 999999999999999999998731
Q ss_pred ceecccccceeee--ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 301 GVQTSINNDLLIK--NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 301 ~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+... ...|...|++++|+| ++++|++++.|++|++|++.
T Consensus 525 --------~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 525 --------ELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp --------EESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred --------ceeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECC
Confidence 23222 334999999999988 89999999999999999973
No 13
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-44 Score=297.14 Aligned_cols=294 Identities=14% Similarity=0.081 Sum_probs=226.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEe-ec-CCCCeEEEEEecCCCEEEEEeCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVT-DV-GNGPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d 79 (349)
+.++++.|++|.++|++++|+|+ +|++|+.|+.|++||+..+ +....+ .. |...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 46778999999999999999975 9999999999999999875 345555 34 99999999999999999999999
Q ss_pred CeEEEEEccCCC----cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC----ceEeceeccccccceeE
Q 018858 80 KEVKSFDVHMPA----SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ----HCLYKSLRAGHSSICSS 151 (349)
Q Consensus 80 g~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~v~~ 151 (349)
+.|++||++... ....+..+.+|...|.+++|+|++++|++|+.|+.|++||++. .+++..+. +|...|.+
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~ 158 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKH 158 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEE
Confidence 999999986421 1234566778999999999999999999999999999999953 25667778 89999999
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc--eeeeecCCCCCCccc
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE--LNISRSKSTTKPLKG 229 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~ 229 (349)
++|+| ++.+|++++.|+.|++||.+.+ +....+ ......+.
T Consensus 159 v~~~p------------------------------------~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-~~h~~~v~ 201 (330)
T 2hes_X 159 VIWHP------------------------------------SEALLASSSYDDTVRIWKDYDDDWECVAVL-NGHEGTVW 201 (330)
T ss_dssp EEECS------------------------------------SSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEE
T ss_pred EEECC------------------------------------CCCEEEEEcCCCeEEEEECCCCCeeEEEEc-cCCCCcEE
Confidence 99999 7899999999999999998765 233333 33456788
Q ss_pred eeeeecc--ccEEEEeeeeeecCce------------eeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEE
Q 018858 230 SQSTSKV--NIRDAEMEILDQSGGK------------RLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294 (349)
Q Consensus 230 ~~~~~~~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vw 294 (349)
.++|+|+ +..+++ ++.|..+.. .......+.+ |...|++++|+ +++ +|++++.||.|++|
T Consensus 202 ~~~~~~~~~~~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~-~l~s~~~dg~v~iw 276 (330)
T 2hes_X 202 SSDFDKTEGVFRLCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG---FNG-LIASVGADGVLAVY 276 (330)
T ss_dssp EEEECCSSSSCEEEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC---TTS-CEEEEETTSCEEEE
T ss_pred EEEecCCCCeeEEEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc---CCC-EEEEEeCCCEEEEE
Confidence 9999998 566664 333332211 1133444554 88999999998 654 89999999999999
Q ss_pred ecCCCcceecccccceeeecccccc-ceEEEEeecC-CCCcEEEeeCCCeEEEeeCC
Q 018858 295 DCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPT-ESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~ 349 (349)
|..+++.. .......+|.. .|++++|+|. ++++|++++.||.|++|+++
T Consensus 277 ~~~~~~~~------~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 277 EEVDGEWK------VFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEETTEEE------EEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EcCCCceE------EEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 98765210 12233457877 8999999885 57899999999999999974
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-44 Score=304.31 Aligned_cols=281 Identities=16% Similarity=0.173 Sum_probs=236.5
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCC------------------CeEEEEEecCCCEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG------------------PVTSLCFKSGNEDII 74 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~ 74 (349)
+|.+.|.|++|+|+ +++|++|+ ++.+++|++.+++.+..+..|.. .|.+++|+|++++|+
T Consensus 62 ~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 59999999999998 89999987 68999999999998877765432 489999999999999
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEE
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
+++.|+.|++||++++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+. +...+.+++|
T Consensus 140 s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~ 214 (393)
T 1erj_A 140 TGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAV 214 (393)
T ss_dssp EEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEE
T ss_pred EEcCCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEEEEE
Confidence 9999999999999875 4455677888999999999999999999999999999999998887776 5677999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC------CCCCCcc
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK------STTKPLK 228 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~ 228 (349)
+|. ++++|++|+.||.|++||++++....... ......+
T Consensus 215 ~~~-----------------------------------~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v 259 (393)
T 1erj_A 215 SPG-----------------------------------DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 259 (393)
T ss_dssp CST-----------------------------------TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred ECC-----------------------------------CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence 984 68899999999999999999877655442 2345678
Q ss_pred ceeeeeccccEEEEeeeeeecCce----------------eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 229 GSQSTSKVNIRDAEMEILDQSGGK----------------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
.+++|+|+++++++ +..|+.+.. ...+...+.+|...|.+++++ +++++|++|+.|+.|+
T Consensus 260 ~~v~~~~~g~~l~s-~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~l~sgs~D~~v~ 335 (393)
T 1erj_A 260 YSVVFTRDGQSVVS-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT---QNDEYILSGSKDRGVL 335 (393)
T ss_dssp EEEEECTTSSEEEE-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEEC---GGGCEEEEEETTSEEE
T ss_pred EEEEECCCCCEEEE-EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEEC---CCCCEEEEEeCCCeEE
Confidence 89999999999985 332222110 123445677899999999999 8999999999999999
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeec-----CCCCcEEEeeCCCeEEEeeC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP-----TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~iw~~ 348 (349)
+||+.++ ..+..+.+|...|.+++|++ +++++|++++.||.|++|++
T Consensus 336 iwd~~~~---------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 336 FWDKKSG---------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEETTTC---------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEECCCC---------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 9999987 56677889999999999976 25778999999999999996
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.6e-44 Score=294.58 Aligned_cols=300 Identities=15% Similarity=0.133 Sum_probs=236.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-----CcEEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-----KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 79 (349)
..+..+|++|.+.|++++|+|+++++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++++|++++.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 3566789999999999999997568999999999999999864 23467889999999999999999999999999
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
+.|++||+++++ .+..+.+|...|.+++|+|++.+|++|+.|+.|++||++. +.+..+. +|...+.++.|.|...
T Consensus 87 ~~v~~wd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~-~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 87 KTLRLWDVATGE---TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLL-GHNDWVSQVRVVPNEK 161 (319)
T ss_dssp SEEEEEETTTTE---EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEEC-CCSSCEEEEEECCC--
T ss_pred CEEEEEECCCCC---eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEe-ccCCcEEEEEEccCCC
Confidence 999999999763 4556677889999999999999999999999999999974 4566777 8999999999998421
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
.. .++..+++++.|+.|++||+++.+....... ....+..++|+|++++
T Consensus 162 ~~------------------------------~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 162 AD------------------------------DDSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTL 210 (319)
T ss_dssp ----------------------------------CCEEEEEETTSCEEEEETTTTEEEEEECC-CCSCEEEEEECTTSSE
T ss_pred CC------------------------------CCccEEEEEeCCCEEEEEECCcchhheeecC-CCCcEEEEEEcCCCCE
Confidence 10 1456899999999999999998766554443 4567899999999999
Q ss_pred EEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 240 DAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 240 ~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
+++. ..|+. .....+.+..+.. ...|.+++|+ |++.+|++++.+ .+++|++........... .......
T Consensus 211 l~s~-~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s---p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~-~~~~~~~ 283 (319)
T 3frx_A 211 IASA-GKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFS---PNRYWLAAATAT-GIKVFSLDPQYLVDDLRP-EFAGYSK 283 (319)
T ss_dssp EEEE-ETTCEEEEEETTTTEEEEEEEC-CSCEEEEEEC---SSSSEEEEEETT-EEEEEEETTEEEEEEECC-CCTTCCG
T ss_pred EEEE-eCCCeEEEEECCCCcEEEEecC-CCcEEEEEEc---CCCCEEEEEcCC-CcEEEEeCcCeeeeccCc-ccccccc
Confidence 9853 32222 2223344455554 4679999999 899999988754 599999987532211000 0011123
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.|...+.+++|+| +|++|++++.||.|++||+
T Consensus 284 ~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 284 AAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp GGCCCEEEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred CcCcceeEEEECC-CCCEEEEeecCceEEEEEE
Confidence 4567899999988 8999999999999999997
No 16
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-43 Score=288.53 Aligned_cols=271 Identities=16% Similarity=0.197 Sum_probs=214.3
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC--CcEEEEeecCCCCeEEEEEec--CCCEEEEEeCCCeEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--KDVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVK 83 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 83 (349)
+..+.+|.+.|++++|+|+ +++|++|+.|++|++||+.. .+.+..+.+|..+|.+++|++ ++++|++++.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 4567899999999999998 89999999999999999974 356788999999999999986 389999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCceE--eceeccccccceeEEEEccCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
+||+++++ ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+. +|...|.+++|+|+..
T Consensus 81 iWd~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 81 IWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATI 158 (297)
T ss_dssp EEEBSSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC-
T ss_pred EEEcCCCc-eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeecCCcc
Confidence 99998753 2334456678889999999997 78999999999999999986532 34456 7899999999999421
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
... + ..... .++++|++|+.|+.|++||++++.
T Consensus 159 ~~~--------~---------~~~~~------~~~~~l~sgs~D~~v~lwd~~~~~------------------------ 191 (297)
T 2pm7_B 159 EED--------G---------EHNGT------KESRKFVTGGADNLVKIWKYNSDA------------------------ 191 (297)
T ss_dssp ----------------------------------CCEEEEEETTSCEEEEEEETTT------------------------
T ss_pred ccc--------c---------cCCCC------CCcceEEEEcCCCcEEEEEEcCCC------------------------
Confidence 000 0 00000 136799999999999999998631
Q ss_pred EEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCC---ccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~---~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
........+.+|...|++++|+ |+ +++|++++.|++|++||++....... ..+.....
T Consensus 192 ------------~~~~~~~~l~~H~~~V~~v~~s---p~~~~~~~las~s~D~~v~iWd~~~~~~~~~----~~~~~~~~ 252 (297)
T 2pm7_B 192 ------------QTYVLESTLEGHSDWVRDVAWS---PTVLLRSYMASVSQDRTCIIWTQDNEQGPWK----KTLLKEEK 252 (297)
T ss_dssp ------------TEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEETTSCEEEEEESSTTSCCE----EEESSSSC
T ss_pred ------------ceEEEEEEecCCCCceEEEEEC---CCCCCceEEEEEECCCcEEEEEeCCCCCccc----eeeeeccc
Confidence 1123456788999999999999 76 48999999999999999987421100 11111246
Q ss_pred cccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 317 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|...|.+++|+| ++++|++++.||.|++|+.
T Consensus 253 ~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 253 FPDVLWRASWSL-SGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp CSSCEEEEEECS-SSCCEEEEETTSCEEEEEE
T ss_pred CCCcEEEEEECC-CCCEEEEEcCCCcEEEEEE
Confidence 788999999988 8889999999999999985
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.7e-43 Score=314.00 Aligned_cols=313 Identities=20% Similarity=0.245 Sum_probs=259.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++.++.+.+|...|.+++|+|+ ++.|++++.|+.|++||.. ++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~ 328 (577)
T 2ymu_A 251 NGQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEE
Confidence 45677888999999999999998 8999999999999999964 677788899999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||+.. ..+..+..|...+.+++|+|+++++++++.|+.|++||. +++.+..+. .|...|.+++|+|++.++..
T Consensus 329 ~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~ 402 (577)
T 2ymu_A 329 LWNRNG----QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIAS 402 (577)
T ss_dssp EEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTSSCEEE
T ss_pred EEeCCC----CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCCCEEEE
Confidence 999864 334556678889999999999999999999999999995 567778888 89999999999999887632
Q ss_pred --CCCC----CCCccc-----cCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 164 --PENN----GNAGQC-----YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 164 --~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
.+.. ...++. .....+.+++++| ++++|++++.|+.|++||.... ...... .....+..++
T Consensus 403 ~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~------d~~~l~~~~~d~~v~~w~~~~~-~~~~~~-~~~~~v~~~~ 474 (577)
T 2ymu_A 403 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP------DDQTIASASDDKTVKLWNRNGQ-LLQTLT-GHSSSVRGVA 474 (577)
T ss_dssp EETTSEEEEECTTCCEEEEEECCSSCEEEEEECT------TSSEEEEEETTSEEEEEETTSC-EEEEEE-CCSSCEEEEE
T ss_pred EeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECC------CCCEEEEEcCCCEEEEEECCCC-EEEEEc-CCCCCEEEEE
Confidence 2222 111221 2346678899988 8999999999999999997643 333322 2356789999
Q ss_pred eeccccEEEEeeeeeecCc---eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccc
Q 018858 233 TSKVNIRDAEMEILDQSGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 309 (349)
|+|+++++++.+ .+..+. ...+++..+.+|...|++++|+ |++++|++++.|+.|++||... +
T Consensus 475 ~spd~~~las~~-~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s---~dg~~l~s~~~dg~v~lwd~~~----------~ 540 (577)
T 2ymu_A 475 FSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS---PDGQTIASASDDKTVKLWNRNG----------Q 540 (577)
T ss_dssp ECTTSCEEEEEE-TTSEEEEEETTSCEEEEEECCSSCEEEEEEC---TTSSCEEEEETTSEEEEECTTS----------C
T ss_pred EcCCCCEEEEEe-CCCEEEEEcCCCCEEEEEeCCCCCEEEEEEc---CCCCEEEEEECcCEEEEEeCCC----------C
Confidence 999999998532 222211 1335667888999999999999 8999999999999999999754 5
Q ss_pred eeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 310 LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.+..+.+|.+.|++++|+| |+++|++++.|+.|++||
T Consensus 541 ~~~~~~~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 541 LLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 6778889999999999988 889999999999999997
No 18
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.8e-43 Score=290.09 Aligned_cols=303 Identities=16% Similarity=0.170 Sum_probs=235.7
Q ss_pred CCccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-----EEEEeecCCCCeEEEEEecCCCEEEE
Q 018858 1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 1 m~~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~ 75 (349)
|++++.+..+|+||++.|++++|+|+++++|+||+.||+|++||+.+.+ +...+.+|...|.+++|+|++++|++
T Consensus 24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 4556667788999999999999999867899999999999999987643 46778899999999999999999999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEec-eeccccccceeEEEE
Q 018858 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK-SLRAGHSSICSSVQF 154 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~ 154 (349)
++.|+.|++|+..... .......+...+....+++++++|++++.|+.+++||+....... ... +|...+..++|
T Consensus 104 ~~~d~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~-~~~~~v~~~~~ 179 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGT---TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE-SHSEWVSCVRF 179 (340)
T ss_dssp EETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS-SCSSCEEEEEE
T ss_pred EcccccceEEeecccc---eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEec-cccCcccceEE
Confidence 9999999999998653 233333456778889999999999999999999999998665443 344 78889999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
++++ ...++++++.|+.|++||+++.+....... ....+.+++|+
T Consensus 180 ~~~~----------------------------------~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~s 224 (340)
T 4aow_A 180 SPNS----------------------------------SNPIIVSCGWDKLVKVWNLANCKLKTNHIG-HTGYLNTVTVS 224 (340)
T ss_dssp CSCS----------------------------------SSCEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEC
T ss_pred ccCC----------------------------------CCcEEEEEcCCCEEEEEECCCCceeeEecC-CCCcEEEEEEC
Confidence 8831 456788999999999999998877665543 35678999999
Q ss_pred ccccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccce
Q 018858 235 KVNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
|+++++++. ..|+. .......+..+.. ...|.++.|+ |++. +++++.|+.|++||+++............
T Consensus 225 ~~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~---~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 298 (340)
T 4aow_A 225 PDGSLCASG-GKDGQAMLWDLNEGKHLYTLDG-GDIINALCFS---PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVI 298 (340)
T ss_dssp TTSSEEEEE-ETTCEEEEEETTTTEEEEEEEC-SSCEEEEEEC---SSSS-EEEEEETTEEEEEETTTTEEEEEECCC--
T ss_pred CCCCEEEEE-eCCCeEEEEEeccCceeeeecC-CceEEeeecC---CCCc-eeeccCCCEEEEEECCCCeEEEeccccce
Confidence 999999853 33322 1223344445554 4579999999 7765 55566799999999998754433222233
Q ss_pred eeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 311 LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.....+|...|++++|+| ++++|++|+.||.|+|||++
T Consensus 299 ~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 299 STSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp -----CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEE
T ss_pred eeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCC
Confidence 344567899999999988 88999999999999999974
No 19
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.4e-43 Score=292.98 Aligned_cols=306 Identities=17% Similarity=0.124 Sum_probs=228.6
Q ss_pred CCCCeeeeCCceeeeEEEE-----ecCCCceEEEeCCCCcEEEEECCCC-------cEEEEeecCCCCeEEEEEecCCCE
Q 018858 5 EAKPRRLRGHKATATCCIA-----SRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSGNED 72 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~-----~~~~~~~l~t~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~ 72 (349)
.++.+.|++|.+.|++++| ++.++++|++|+.|++|++||+.+. .....+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 3467789999999999999 6634899999999999999998753 346778899999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEecee-ccccccceeE
Q 018858 73 IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL-RAGHSSICSS 151 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~ 151 (349)
+++++.|+.|++||+++++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+......... ...|...+.+
T Consensus 91 l~s~s~D~~v~lwd~~~~~---~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGT---TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEETTSEEEEEETTSSC---EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEcCCCcEEEEECCCCc---EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 9999999999999999764 44556678899999999999999999999999999999854332222 1157788999
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCcccee
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (349)
++|+|++.-. ..+.| .+.+|++++.||.|++||.+. ....... .....+..+
T Consensus 168 ~~~~~~~~~~--------------------~~~~~------~~~~l~s~~~d~~i~iwd~~~-~~~~~~~-~h~~~v~~~ 219 (343)
T 2xzm_R 168 VRYSPIMKSA--------------------NKVQP------FAPYFASVGWDGRLKVWNTNF-QIRYTFK-AHESNVNHL 219 (343)
T ss_dssp EEECCCCCSC--------------------SCCCS------SCCEEEEEETTSEEEEEETTT-EEEEEEE-CCSSCEEEE
T ss_pred eeeccccccc--------------------cccCC------CCCEEEEEcCCCEEEEEcCCC-ceeEEEc-CccccceEE
Confidence 9999942100 01112 457999999999999999543 3333222 345678999
Q ss_pred eeeccccEEEEeeeeeecCce-----eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee--c
Q 018858 232 STSKVNIRDAEMEILDQSGGK-----RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ--T 304 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~ 304 (349)
+|+|+|+++++. ..|+.+.. .......+ .+...|.+++|+ |++++++++ .|+.|++||+.+.+... .
T Consensus 220 ~~s~~g~~l~sg-s~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~s---p~~~~la~~-~d~~v~iw~~~~~~~~~~~~ 293 (343)
T 2xzm_R 220 SISPNGKYIATG-GKDKKLLIWDILNLTYPQREF-DAGSTINQIAFN---PKLQWVAVG-TDQGVKIFNLMTQSKAPVCT 293 (343)
T ss_dssp EECTTSSEEEEE-ETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEEC---SSSCEEEEE-ESSCEEEEESSSCCSCSEEE
T ss_pred EECCCCCEEEEE-cCCCeEEEEECCCCcccceee-cCCCcEEEEEEC---CCCCEEEEE-CCCCEEEEEeCCCCCCceEE
Confidence 999999999853 33322111 11111222 245579999999 888887655 57889999998764321 0
Q ss_pred cc--ccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 305 SI--NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 305 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.. .........+|...|++++|+| ++++|++|+.||.|++|++
T Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 294 IEAEPITKAEGQKGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CCCCSGGGBTTBCCSCCCEEEEEECS-SSCCEEEEETTSEEEEEEE
T ss_pred eecCcchhhhhhcCCCCceEEEEECC-CCCeEEEecCCceEEEEEE
Confidence 00 0000111236888999999988 8889999999999999996
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-42 Score=308.41 Aligned_cols=313 Identities=19% Similarity=0.227 Sum_probs=255.0
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
++.++|+||++.|+|++|+|+ +++||+|+.|+.|+|||. +++++.++.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 7 ~e~~~L~GH~~~V~~~a~spd-g~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEeeEECCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 345789999999999999998 899999999999999995 678899999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|+. + +.+..+.+|...|.+++|+|++++|++++.|+.+++|+...... .... .+...+..+.++|++..+....
T Consensus 85 d~~-~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~ 158 (577)
T 2ymu_A 85 NRN-G---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLT-GHSSSVWGVAFSPDGQTIASAS 158 (577)
T ss_dssp ETT-S---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE-EEEC-CCSSCEEEEEECTTSSCEEEEE
T ss_pred ECC-C---CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccccee-eecc-CCCCceeeeeeecCCccceecc
Confidence 964 3 45566778889999999999999999999999999999765543 4455 6888999999999876552211
Q ss_pred CC-----------CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 166 NN-----------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 166 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
.. ...........+..+++.| ++++|++++.||.|++||... +...... .....+.+++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~v~~w~~~~-~~~~~~~-~~~~~v~~~~~s 230 (577)
T 2ymu_A 159 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP------DGQTIASASDDKTVKLWNRNG-QLLQTLT-GHSSSVRGVAFS 230 (577)
T ss_dssp TTSEEEEECTTSCEEEEEECCSSCEEEEEECT------TSSCEEEEETTSEEEEECTTS-CEEEEEE-CCSSCEEEEEEC
T ss_pred cccceeccccceeeeeeccCCCcceeeeeecC------CCCEEEEEcCCCEEEEEeCCC-cEEEEEe-cCCCCEEEEEEC
Confidence 11 1111122345677888888 899999999999999999754 3333322 235678899999
Q ss_pred ccccEEEEeeeeeecCc---eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccccccee
Q 018858 235 KVNIRDAEMEILDQSGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL 311 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 311 (349)
|+++++++.+ .++.+. ...+.+..+.+|...|++++|+ |++++|++++.|+.|++||... ..+
T Consensus 231 ~dg~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~---~d~~~l~~~~~d~~i~~w~~~~----------~~~ 296 (577)
T 2ymu_A 231 PDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR---PDGQTIASASDDKTVKLWNRNG----------QLL 296 (577)
T ss_dssp TTSSCEEEEE-TTSCEEEECTTSCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTS----------CEE
T ss_pred CCCCEEEEEe-CCCEEEEEeCCCCEEEEEecCCCCEEEEEEc---CCCCEEEEEeCCCEEEEEeCCC----------cEE
Confidence 9999988532 222211 1234566788899999999999 8999999999999999999765 566
Q ss_pred eeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 312 IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 312 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+.+|...|.+++++| ++++|++++.|+.|++||+.
T Consensus 297 ~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred EEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 67789999999999988 88899999999999999963
No 21
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.4e-43 Score=290.44 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=208.5
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEec--CCCEEEEEeCCCeEEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKS 84 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 84 (349)
..+.+|.+.|++++|+|+ +++|++|+.|++|++||+.+++ .+..+.+|..+|.+++|++ ++++|++++.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 456799999999999998 8999999999999999998765 4678899999999999986 4899999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCce---EeceeccccccceeEEEEccCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHC---LYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
||+++++ ......+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+. ....+. +|...+.+++|+|+..
T Consensus 86 Wd~~~~~-~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 86 WREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN-AHTIGCNAVSWAPAVV 163 (316)
T ss_dssp ECCSSSC-CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT-SSSSCBCCCEECCCCC
T ss_pred EECCCCc-ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec-cccCCcceEEEccccC
Confidence 9998653 2344556778899999999997 7899999999999999998653 234555 7888999999999521
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
-.. .. ..+.......+++|++|+.|+.|++||++..
T Consensus 164 ~~~----------~~---------~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~------------------------- 199 (316)
T 3bg1_A 164 PGS----------LI---------DHPSGQKPNYIKRFASGGCDNLIKLWKEEED------------------------- 199 (316)
T ss_dssp C-------------------------CCSCCCCCCCBEECCBTTSBCCEEEECTT-------------------------
T ss_pred Ccc----------cc---------ccccccCccccceEEEecCCCeEEEEEeCCC-------------------------
Confidence 000 00 0000000013578999999999999999742
Q ss_pred EEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCc----cEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG----KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
........+.+|...|++++|+ |++ ++|++++.|++|++|++....... .......
T Consensus 200 ------------~~~~~~~~l~~h~~~V~~v~~s---p~~~~~~~~las~s~D~~v~iw~~~~~~~~~-----~~~~~~~ 259 (316)
T 3bg1_A 200 ------------GQWKEEQKLEAHSDWVRDVAWA---PSIGLPTSTIASCSQDGRVFIWTCDDASSNT-----WSPKLLH 259 (316)
T ss_dssp ------------SCEEEEECCBCCSSCEEEEECC---CCSSCSCCEEEEEETTCEEEEEECSSTTCCC-----CBCCEEE
T ss_pred ------------CccceeeecccCCCceEEEEec---CCCCCCCceEEEEcCCCeEEEEEccCccccc-----hhhhhhh
Confidence 1113456778999999999999 665 899999999999999998632100 1122335
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.|...|.+++|+| ++++|++++.|+.|++|+.
T Consensus 260 ~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 260 KFNDVVWHVSWSI-TANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp ECSSCEEEEEECT-TTCCEEEEESSSCEEEEEE
T ss_pred cCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEE
Confidence 6888999999988 8889999999999999985
No 22
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-41 Score=277.64 Aligned_cols=285 Identities=14% Similarity=0.195 Sum_probs=242.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
..+.++.+++|.+.|++++| |+ +++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|+
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 34678899999999999999 87 78999999999999999999998899999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+|++........+..+..|...+.+++| +++++++++.||.|++|| .++....+. .|...+.++.|.|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~------ 153 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSF------ 153 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSSCEEEEEEEET------
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCCceeEEEEccC------
Confidence 9999876555666777888999999999 577999999999999999 667777787 89999999999883
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
+++++++++.||.|++||.. .............+..++|+|++. +++
T Consensus 154 -----------------------------~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~- 200 (313)
T 3odt_A 154 -----------------------------SENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FIS- 200 (313)
T ss_dssp -----------------------------TTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE-EEE-
T ss_pred -----------------------------CCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe-EEE-
Confidence 67899999999999999943 444455555678899999999999 442
Q ss_pred eeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc
Q 018858 244 EILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK 319 (349)
Q Consensus 244 ~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 319 (349)
+..++. .....+.+..+.+|...|++++|+ |++ .|++++.||.|++||+.++ ..+..+..|..
T Consensus 201 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~---~~~-~l~~~~~dg~v~iwd~~~~---------~~~~~~~~~~~ 267 (313)
T 3odt_A 201 CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL---PNG-DIVSCGEDRTVRIWSKENG---------SLKQVITLPAI 267 (313)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC---TTS-CEEEEETTSEEEEECTTTC---------CEEEEEECSSS
T ss_pred ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe---cCC-CEEEEecCCEEEEEECCCC---------ceeEEEeccCc
Confidence 332222 222345667788899999999999 888 6889999999999999997 56667788999
Q ss_pred ceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 320 KVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 320 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.|.+++|+| +++ +++++.||.|++|+++
T Consensus 268 ~i~~~~~~~-~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 268 SIWSVDCMS-NGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp CEEEEEECT-TSC-EEEEETTSCEEEEESC
T ss_pred eEEEEEEcc-CCC-EEEEeCCCcEEEEeCC
Confidence 999999988 665 7789999999999974
No 23
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.9e-42 Score=292.00 Aligned_cols=290 Identities=14% Similarity=0.095 Sum_probs=238.6
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc------EEEEeecCCCCeEEEEEecC----C---CE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD------VQLVTDVGNGPVTSLCFKSG----N---ED 72 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~ 72 (349)
...+.+++|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+..|..+|.+++|+|+ + ++
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 45677889999999999987 599999999999999999887 68888899999999999999 9 99
Q ss_pred EEEEeCCCeEEEEEccCCCcc--cceeeccCc-----ccceEEEEEc----cCCCE-EEEEcCCCcEEEEEcCC------
Q 018858 73 IIYVSSGKEVKSFDVHMPASW--RPLESYNYN-----KEEINQIVCN----PKSSF-LACADDGGDVKIIDIRQ------ 134 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~i~d~~~------ 134 (349)
|++++.|+.|++||+.+++.. ..+..+..| ...|.+++|+ |++++ |++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 999999999999999876431 014445555 5889999999 99999 99999999999999998
Q ss_pred ceEec-----eec------cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC
Q 018858 135 HCLYK-----SLR------AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 203 (349)
Q Consensus 135 ~~~~~-----~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 203 (349)
++.+. .+. ..|...+.+++|+| ++ +|++++.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------------------~~-~l~~~~~d 206 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISE------------------------------------RG-LIATGFNN 206 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT------------------------------------TS-EEEEECTT
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECC------------------------------------Cc-eEEEEeCC
Confidence 66655 553 14778899999999 78 99999999
Q ss_pred CeEEEEEccCceeeeecCCC--C---CCccceeeeeccccEEEEeeeee---ec----CceeeeeeeeecC---------
Q 018858 204 GVVDVINIESELNISRSKST--T---KPLKGSQSTSKVNIRDAEMEILD---QS----GGKRLHLDYSVGG--------- 262 (349)
Q Consensus 204 g~i~i~d~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~--------- 262 (349)
|.|++||+++.+........ . ...+..++|+|+++++++.+ .+ +. .....+.+..+.+
T Consensus 207 g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 285 (397)
T 1sq9_A 207 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERIGSLSVPTHSSQASL 285 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCcccceeccCcccccccc
Confidence 99999999988776655541 3 67889999999999998533 33 22 2223455667777
Q ss_pred ----CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc------cc---------------
Q 018858 263 ----HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI------NL--------------- 317 (349)
Q Consensus 263 ----h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~------~~--------------- 317 (349)
|...|.++.|+ |++++|++++.|+.|++||+.++ ..+..+. .|
T Consensus 286 ~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (397)
T 1sq9_A 286 GEFAHSSWVMSLSFN---DSGETLCSAGWDGKLRFWDVKTK---------ERITTLNMHCDDIEIEEDILAVDEHGDSLA 353 (397)
T ss_dssp CCBSBSSCEEEEEEC---SSSSEEEEEETTSEEEEEETTTT---------EEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred cccccCCcEEEEEEC---CCCCEEEEEeCCCeEEEEEcCCC---------ceeEEEecccCcccchhhhhcccccccccc
Confidence 99999999999 89999999999999999999987 4444444 56
Q ss_pred ccceEEEEeecCCC----------CcEEEeeCCCeEEEeeCC
Q 018858 318 NKKVNWLCTTPTES----------ENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 318 ~~~v~~~~~~~~~~----------~~l~~~~~dg~i~iw~~~ 349 (349)
...|++++|+| ++ ++|++++.||.|++|+++
T Consensus 354 ~~~v~~~~~~~-~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 354 EPGVFDVKFLK-KGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp SCCEEEEEEEC-TTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred CCceeEEEecc-ccccccccccccceEEEecCCCcEEEEEcC
Confidence 89999999998 65 699999999999999973
No 24
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-41 Score=284.91 Aligned_cols=286 Identities=11% Similarity=0.112 Sum_probs=236.6
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
.....|.+|.+.|++++|+|+ +++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 345668999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC-----CcEEEEEcCCceEe-----------ceecccccc--
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHCLY-----------KSLRAGHSS-- 147 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-----------~~~~~~~~~-- 147 (349)
|+++++....+. +...+.+++|+|+++++++++.+ +.|++||++..... ..+. .+..
T Consensus 102 d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 176 (369)
T 3zwl_B 102 DVSNGQCVATWK----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLD 176 (369)
T ss_dssp ETTTCCEEEEEE----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCC
T ss_pred ECCCCcEEEEee----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCcc
Confidence 999875443333 56789999999999999999998 99999999855322 2222 3333
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-ceeeeecCCCCCC
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSKSTTKP 226 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~ 226 (349)
.+.+++|+| ++++|++++.||.|++||+++ ....... .....
T Consensus 177 ~~~~~~~~~------------------------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~ 219 (369)
T 3zwl_B 177 AATVAGWST------------------------------------KGKYIIAGHKDGKISKYDVSNNYEYVDSI-DLHEK 219 (369)
T ss_dssp CEEEEEECG------------------------------------GGCEEEEEETTSEEEEEETTTTTEEEEEE-ECCSS
T ss_pred ceeEEEEcC------------------------------------CCCEEEEEcCCCEEEEEECCCCcEeEEEE-ecCCC
Confidence 677788877 899999999999999999998 4443333 33457
Q ss_pred ccceeeeeccccEEEEeeeeee----cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC-------------
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK------------- 289 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~------------- 289 (349)
.+..++|+|+++++++.+ .++ +..........+. +...+..+.|+ |+++++++++.++
T Consensus 220 ~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (369)
T 3zwl_B 220 SISDMQFSPDLTYFITSS-RDTNSFLVDVSTLQVLKKYE-TDCPLNTAVIT---PLKEFIILGGGQEAKDVTTTSANEGK 294 (369)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSSSEEEEEECCC-------------
T ss_pred ceeEEEECCCCCEEEEec-CCceEEEEECCCCceeeeec-CCCCceeEEec---CCCceEEEeecCCCceEEEEecCCCc
Confidence 789999999999998632 222 1122233444444 67789999999 8999999999888
Q ss_pred -eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 290 -LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 290 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+++||+.++ ..+..+.+|...|++++|+| ++++|++++.||.|++|+++
T Consensus 295 ~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 295 FEARFYHKIFE---------EEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp CEEEEEETTTC---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEEC
T ss_pred ceeEEEecCCC---------cchhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECc
Confidence 8999999987 66677788999999999988 88899999999999999974
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.6e-41 Score=281.03 Aligned_cols=281 Identities=14% Similarity=0.168 Sum_probs=235.8
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE---EEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV---QLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
...+|...|++++|+|+ +++|++++ ||.|++||+.+++. +..+. .|...|.+++|+|++++|++++.|+.|++
T Consensus 46 ~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred eeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 34479999999999998 89999999 99999999987653 23333 68899999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
||+++++. .....+..|...+.+++|+|+++++++++.||.|++||+++++.+..+. .|...+.+++|+|
T Consensus 124 ~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~-------- 193 (337)
T 1gxr_A 124 WDLAAPTP-RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISN-------- 193 (337)
T ss_dssp EECCCC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECT--------
T ss_pred EECCCCCc-ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-cccCceEEEEECC--------
Confidence 99987642 2344556677889999999999999999999999999999999999998 8999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
++++|++++.||.|++||+++++...... ....+..++|+|+++.+++..
T Consensus 194 ----------------------------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 194 ----------------------------DGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp ----------------------------TSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEE
T ss_pred ----------------------------CCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEc
Confidence 78999999999999999999887666543 346788999999999998533
Q ss_pred eeeecC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 245 ILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 245 ~~~~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
.++.+ ... .....+..|...|.++.|+ |++++|++++.||.|++||+.+++ .+ ....|...
T Consensus 244 -~~~~i~~~~~~~-~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~~~~~~~~~---------~~-~~~~~~~~ 308 (337)
T 1gxr_A 244 -ESSNVEVLHVNK-PDKYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGA---------SI-FQSKESSS 308 (337)
T ss_dssp -TTSCEEEEETTS-SCEEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCC---------EE-EEEECSSC
T ss_pred -CCCcEEEEECCC-CCeEEEcCCccceeEEEEC---CCCCEEEEecCCCcEEEEECCCCe---------EE-EEecCCCc
Confidence 22211 111 1123567789999999999 899999999999999999999873 33 33468889
Q ss_pred eEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 321 VNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.+++|+| ++++|++++.||.|++|++
T Consensus 309 v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 309 VLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred EEEEEECC-CCCEEEEecCCCeEEEEEE
Confidence 99999988 7889999999999999996
No 26
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.5e-41 Score=284.19 Aligned_cols=295 Identities=10% Similarity=0.050 Sum_probs=235.4
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
.+..|.++|++++|+|+ +++|++++.|+.|++||+.+++ .+..+..|...|.+++|+|++++|++++.||.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 45679999999999998 8999999999999999999887 78889999999999999999999999999999999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce---EeceeccccccceeEEEEccCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC---LYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
++++.. ....+..|...+.+++|+|++++|++++.|+.|++||++.++ ....+...|...|.+++|+|
T Consensus 82 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------- 152 (372)
T 1k8k_C 82 KGRTWK-PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-------- 152 (372)
T ss_dssp ETTEEE-EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT--------
T ss_pred CCCeee-eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC--------
Confidence 875422 223345577899999999999999999999999999998765 23333226788999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc------------------CceeeeecCCCCCC
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE------------------SELNISRSKSTTKP 226 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~ 226 (349)
++++|++++.||.|++||++ .++...... ....
T Consensus 153 ----------------------------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 203 (372)
T 1k8k_C 153 ----------------------------NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCG 203 (372)
T ss_dssp ----------------------------TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSS
T ss_pred ----------------------------CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCC
Confidence 78999999999999999964 333333333 3456
Q ss_pred ccceeeeeccccEEEEeeeeee----cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC--Cc
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR--FQ 300 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~ 300 (349)
.+..++|+|+++++++.+ .++ +.....+.+..+..|...|.+++|+ |++++++++ .|+.|++|++.. +.
T Consensus 204 ~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~-~d~~i~i~~~~~~~~~ 278 (372)
T 1k8k_C 204 WVHGVCFSANGSRVAWVS-HDSTVCLADADKKMAVATLASETLPLLAVTFI---TESSLVAAG-HDCFPVLFTYDSAAGK 278 (372)
T ss_dssp CEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE---ETTEEEEEE-TTSSCEEEEEETTTTE
T ss_pred eEEEEEECCCCCEEEEEe-CCCEEEEEECCCCceeEEEccCCCCeEEEEEe---cCCCEEEEE-eCCeEEEEEccCcCce
Confidence 789999999999988633 222 2222345667778899999999999 899988887 899999999988 31
Q ss_pred ce--ec---------------------ccccce-------eeeccccccceEEEEeecCCC---CcEEEeeCCCeEEEee
Q 018858 301 GV--QT---------------------SINNDL-------LIKNINLNKKVNWLCTTPTES---ENLVVCDTSKVVKVYS 347 (349)
Q Consensus 301 ~~--~~---------------------~~~~~~-------~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~iw~ 347 (349)
-. .. ...... .....+|...|++++|++.++ .+|++++.||.|++|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 00 00 000011 222348999999999988787 8999999999999999
Q ss_pred C
Q 018858 348 I 348 (349)
Q Consensus 348 ~ 348 (349)
+
T Consensus 359 ~ 359 (372)
T 1k8k_C 359 V 359 (372)
T ss_dssp H
T ss_pred e
Confidence 6
No 27
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-42 Score=293.67 Aligned_cols=296 Identities=9% Similarity=0.019 Sum_probs=225.3
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
...++.|.++|++++|+|+ +++|++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 4 ~~~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 4 SQVLHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EEEEEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred ceeEecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 3455667889999999998 899999999999999999988 6777888999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce---Eeceeccc-cccceeEEEEccCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC---LYKSLRAG-HSSICSSVQFIPWKPWE 161 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~ 161 (349)
|+.+++.......+..|...|.+++|+|++++|++++.|+.|++||+++++ ....+. . |...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~----- 156 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK-RPLRSTILSLDWHP----- 156 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC-SSCCSCEEEEEECT-----
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee-cccCCCeEEEEEcC-----
Confidence 999765334555667788999999999999999999999999999999876 356676 5 899999999999
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC------------------ceeeeecCCC
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES------------------ELNISRSKST 223 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------------------~~~~~~~~~~ 223 (349)
++++|++++.||.|++||++. ++..... .
T Consensus 157 -------------------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 203 (377)
T 3dwl_C 157 -------------------------------NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--P 203 (377)
T ss_dssp -------------------------------TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--C
T ss_pred -------------------------------CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--c
Confidence 789999999999999999952 2233333 5
Q ss_pred CCCccceeeeeccccEEEEeeeeeecCc----eee----eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEILDQSGG----KRL----HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
....+.+++|+|+++++++. ..++.+. ... ..+..+.+|...|.+++|+ |++++|++++.|+.+ +|+
T Consensus 204 ~~~~v~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 204 SGGWVHAVGFSPSGNALAYA-GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA---NESAIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp CSSSEEEEEECTTSSCEEEE-ETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEE---ETTEEEEEESSSSEE-EEC
T ss_pred CCceEEEEEECCCCCEEEEE-eCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEc---CCCCEEEEEcCCcEE-EEE
Confidence 56778999999999988853 3332211 111 2267788899999999999 899999999877666 666
Q ss_pred cCCCc-cee-ccc-----cc------------------------------------ceeeeccccccceEEEEeecCCCC
Q 018858 296 CSRFQ-GVQ-TSI-----NN------------------------------------DLLIKNINLNKKVNWLCTTPTESE 332 (349)
Q Consensus 296 ~~~~~-~~~-~~~-----~~------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~ 332 (349)
..... ... ... .. ........|.+.|+++++.+.++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~ 358 (377)
T 3dwl_C 279 GNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG 358 (377)
T ss_dssp CCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT
T ss_pred eCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC
Confidence 65221 000 000 00 000112249999999998775554
Q ss_pred ---cEEEeeCCCeEEEeeC
Q 018858 333 ---NLVVCDTSKVVKVYSI 348 (349)
Q Consensus 333 ---~l~~~~~dg~i~iw~~ 348 (349)
.|+|++.||.|++||+
T Consensus 359 ~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 359 NITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEEEETTSEEEEECC
T ss_pred ceEEEEeecCCCcEEEecC
Confidence 6999999999999996
No 28
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.5e-41 Score=286.31 Aligned_cols=287 Identities=9% Similarity=0.040 Sum_probs=227.0
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee--cCCCCeEEEEEec-CCCEEEEEeCCCe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKS-GNEDIIYVSSGKE 81 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~ 81 (349)
.+..+.+.+|.+.|++++|+|++.++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 456778899999999999999833899999999999999999888776665 6999999999999 7899999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
|++||++. .....+.....+...+.+++|+|++++|++++.|+.|++||+ +++.+..+. .|...|.+++|+|
T Consensus 143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~~~~----- 214 (383)
T 3ei3_B 143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAEFNP----- 214 (383)
T ss_dssp EEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEEECS-----
T ss_pred EEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEEECC-----
Confidence 99999985 334444444455678999999999999999999999999999 566778888 8999999999999
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccC----ceeeeecCCCCCCccceeeeec-
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIES----ELNISRSKSTTKPLKGSQSTSK- 235 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~- 235 (349)
+++ +|++++.|+.|++||+++ ....... .....+.+++|+|
T Consensus 215 -------------------------------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~ 261 (383)
T 3ei3_B 215 -------------------------------RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPT 261 (383)
T ss_dssp -------------------------------SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTT
T ss_pred -------------------------------CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCC
Confidence 676 899999999999999997 4444433 3567899999999
Q ss_pred cccEEEEeeeeeecC----ceeeeeeeeecC-------CC----------cceEEEEEeeecCCccEEEEeeCCCeEEEE
Q 018858 236 VNIRDAEMEILDQSG----GKRLHLDYSVGG-------HT----------AAASCVAFSMFGERGKYLISGGNDKLVKVW 294 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~-------h~----------~~i~~i~~~~~~~~~~~l~s~~~d~~i~vw 294 (349)
+++++++.+ .++.+ .........+.+ |. ..+..+.++ |++++ +++.|+.|++|
T Consensus 262 ~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s---~dg~~--s~s~d~~i~iw 335 (383)
T 3ei3_B 262 DSTKLLTTD-QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY---PDDQL--LLNDKRTIDIY 335 (383)
T ss_dssp TSCEEEEEE-SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB---CCTTT--CTTCCCCEEEE
T ss_pred CCCEEEEEc-CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEec---CCccc--ccCCCCeEEEE
Confidence 999998533 22211 111112222222 22 234446666 67666 77899999999
Q ss_pred ecCCCcceecccccceeeeccc--cccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 295 DCSRFQGVQTSINNDLLIKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|+.++ ..+..+.+ |...+..++|+| ++++|++++ ||.|++||++
T Consensus 336 d~~~~---------~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 336 DANSG---------GLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp ETTTC---------CEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC
T ss_pred ecCCC---------ceeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecC
Confidence 99987 45555555 566777889988 888999997 9999999984
No 29
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.1e-41 Score=281.11 Aligned_cols=300 Identities=16% Similarity=0.169 Sum_probs=230.6
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCC---CCcEEEEECCCCcEEEEe-ecCCCCeEEEEEecC---CCEEEEEeCCC
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKSG---NEDIIYVSSGK 80 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~dg 80 (349)
.+.+++|.+.|++++|+|++..++++|+. ||.|++||+.+++..... ..|..+|.+++|+|+ +++|++++.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34457899999999999984456677776 999999999988865443 368999999999998 69999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEE------EccCCCEEEEEcCCCcEEEEEcCCce-Eeceecccccc----ce
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIV------CNPKSSFLACADDGGDVKIIDIRQHC-LYKSLRAGHSS----IC 149 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~----~v 149 (349)
.|++||+.+++ ..+..+..|...|.+++ |+|++++|++++.||.|++||+++++ .+..+. .+.. .+
T Consensus 91 ~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v 167 (357)
T 3i2n_A 91 NLHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKRDC 167 (357)
T ss_dssp CEEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCCCE
T ss_pred eEEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCCce
Confidence 99999999764 24556677889999995 46789999999999999999999876 566665 3333 78
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
.+++|.+ ++++ ++++|++++.||.|++||+++++..... .....+.
T Consensus 168 ~~~~~~~--------------------------~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~ 213 (357)
T 3i2n_A 168 WTVAFGN--------------------------AYNQ------EERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVC 213 (357)
T ss_dssp EEEEEEC--------------------------CCC-------CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEE
T ss_pred EEEEEEe--------------------------ccCC------CCCEEEEEccCCeEEEEECccCceeeec--CCCCceE
Confidence 8888432 1111 7899999999999999999988764442 2356789
Q ss_pred eeeeec---cccEEEEeeeeeecC----ceeeeeee-----eecCCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEec
Q 018858 230 SQSTSK---VNIRDAEMEILDQSG----GKRLHLDY-----SVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDC 296 (349)
Q Consensus 230 ~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~ 296 (349)
.++|+| ++..+++. ..++.+ ........ .+.+|...|++++|+ |+++ +|++++.||.|++||+
T Consensus 214 ~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 214 SLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL---PQNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp EEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE---TTEEEEEEEEETTSEEEEEEE
T ss_pred EEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC---CCCCcEEEEEeCCCcEEEeec
Confidence 999999 88988853 222221 11222222 234899999999999 8888 8999999999999999
Q ss_pred CCCcceecc----------cccceeeeccccccceEEEEeecCCCCcEE-EeeCCCeEEEeeCC
Q 018858 297 SRFQGVQTS----------INNDLLIKNINLNKKVNWLCTTPTESENLV-VCDTSKVVKVYSIS 349 (349)
Q Consensus 297 ~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~iw~~~ 349 (349)
+........ .....+..+.+|...|++++|+| ++++|+ +++.||.|++|++.
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp ECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEEC
T ss_pred CCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECC
Confidence 875432110 01135667778999999999988 777888 79999999999974
No 30
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-41 Score=285.15 Aligned_cols=274 Identities=16% Similarity=0.189 Sum_probs=219.9
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC--CCcEEEEeecCCCCeEEEEEecC--CCEEEEEeCCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGK 80 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg 80 (349)
+++++.+++|.+.|++++|+|+ +++|++|+.||.|++||+. +++.+..+.+|..+|.+++|+++ +++|++++.||
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ----CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CCccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 4577899999999999999998 8999999999999999998 55667888999999999999977 99999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCce--EeceeccccccceeEEEEcc
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~ 156 (349)
.|++||+++++ ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||++++. ....+. .|...|.+++|+|
T Consensus 80 ~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 80 KVLIWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAP 157 (379)
T ss_dssp CEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECC
T ss_pred EEEEEEcCCCc-eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcC
Confidence 99999999753 2345566678899999999999 8999999999999999999763 333455 7888999999998
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
...... .... ..+++.+|++++.||.|++||++...
T Consensus 158 ~~~~~~-----------------~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~--------------------- 193 (379)
T 3jrp_A 158 ATIEED-----------------GEHN------GTKESRKFVTGGADNLVKIWKYNSDA--------------------- 193 (379)
T ss_dssp CC---------------------------------CTTCEEEEEETTSCEEEEEEETTT---------------------
T ss_pred cccccc-----------------cccc------CCCCCCEEEEEeCCCeEEEEEecCCC---------------------
Confidence 310000 0000 01147899999999999999998631
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCC---ccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~---~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
........+.+|...|.+++|+ |+ +++|++++.||.|++||+.+...... ..+..
T Consensus 194 ---------------~~~~~~~~~~~h~~~v~~~~~s---p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~ 251 (379)
T 3jrp_A 194 ---------------QTYVLESTLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIWTQDNEQGPWK----KTLLK 251 (379)
T ss_dssp ---------------TEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEETTSCEEEEEESSTTSCCE----EEESS
T ss_pred ---------------cceeeEEEEecccCcEeEEEEC---CCCCCCCeEEEEeCCCEEEEEeCCCCCccce----eeeec
Confidence 1224556778899999999999 88 89999999999999999998632110 22333
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
...|...|++++|+| ++++|++++.||.|++|++
T Consensus 252 ~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 252 EEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp SSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEE
T ss_pred cccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeC
Confidence 445888999999988 8889999999999999996
No 31
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8e-41 Score=280.48 Aligned_cols=281 Identities=9% Similarity=0.083 Sum_probs=213.8
Q ss_pred CceeeeEEEEecCCCceEEEeCCCC-------cEEEEECCCCcE----------EEEeecCCCCeEEEEEecCCCEEEEE
Q 018858 14 HKATATCCIASRDRPGFVASSGEDG-------CICWFDLRSKDV----------QLVTDVGNGPVTSLCFKSGNEDIIYV 76 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg-------~i~vwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~ 76 (349)
-.-||+|++|+|+ +++|++|+.+. .|++|++..... ...+..|...|.+++++ ++.++++
T Consensus 13 ~g~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g 89 (365)
T 4h5i_A 13 VGYPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVG 89 (365)
T ss_dssp CSSCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEE
T ss_pred CCCCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEE
Confidence 3468999999998 89999987543 599999875431 12456778888887665 5567665
Q ss_pred e-----------CCCeEEEEEccCCCcc-cceee-----ccCcccceEEEEEccCCCEEEE--EcCCCcEEEEEcCCceE
Q 018858 77 S-----------SGKEVKSFDVHMPASW-RPLES-----YNYNKEEINQIVCNPKSSFLAC--ADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 77 ~-----------~dg~i~iwd~~~~~~~-~~~~~-----~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~ 137 (349)
. .|+.+++|++...... ..... ...+...+.+++|+|||+++++ ++.|+.|++||++++++
T Consensus 90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 90 CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence 4 4678999998764321 11111 1223456889999999998765 44789999999999999
Q ss_pred eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee
Q 018858 138 YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 217 (349)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 217 (349)
+..+. |...|.+++|+| +++++++++.++ +.+|+..++...
T Consensus 170 ~~~~~--~~~~V~~v~fsp------------------------------------dg~~l~s~s~~~-~~~~~~~~~~~~ 210 (365)
T 4h5i_A 170 KFEIE--TRGEVKDLHFST------------------------------------DGKVVAYITGSS-LEVISTVTGSCI 210 (365)
T ss_dssp EEEEE--CSSCCCEEEECT------------------------------------TSSEEEEECSSC-EEEEETTTCCEE
T ss_pred EEEeC--CCCceEEEEEcc------------------------------------CCceEEecccee-EEEEEeccCcce
Confidence 88887 777899999999 899999998655 566666655544
Q ss_pred e-ecCCCCCCccceeeeeccccEEEEeeeee----------ecCc-eeeeeeeeecCCCcceEEEEEeeecCCccEEEEe
Q 018858 218 S-RSKSTTKPLKGSQSTSKVNIRDAEMEILD----------QSGG-KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 285 (349)
Q Consensus 218 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~ 285 (349)
. .........+..++|+|+++.+++..... .... ........+.+|...|++++|+ |+|++||+|
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S---pdg~~lasg 287 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD---MKGELAVLA 287 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC---TTSCEEEEE
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEEC---CCCCceEEE
Confidence 3 44445567789999999999998643211 1111 1222345677899999999999 999999999
Q ss_pred eCCCeEEEEecCCCcceecccccceeee-ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 286 GNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 286 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.|+.|+|||++++ +++.. ..+|...|++++|+| |+++|++++.|++|+||+++
T Consensus 288 s~D~~V~iwd~~~~---------~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 288 SNDNSIALVKLKDL---------SMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp ETTSCEEEEETTTT---------EEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECC
T ss_pred cCCCEEEEEECCCC---------cEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcC
Confidence 99999999999997 55554 578999999999988 89999999999999999985
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-41 Score=286.46 Aligned_cols=324 Identities=12% Similarity=0.045 Sum_probs=247.0
Q ss_pred CCeeeeC--CceeeeEEEEecCCCc-eEEEeCCCCcEEEEEC----CCCc------EEEEeec----------CCCCeEE
Q 018858 7 KPRRLRG--HKATATCCIASRDRPG-FVASSGEDGCICWFDL----RSKD------VQLVTDV----------GNGPVTS 63 (349)
Q Consensus 7 ~~~~l~~--h~~~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~----~~~~------~~~~~~~----------~~~~v~~ 63 (349)
..+.+.. |.+.|++++|+|+ ++ +|++|+.||.|++||+ .+++ ....+.. |...|.+
T Consensus 35 ~~~~~~~~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (425)
T 1r5m_A 35 FVKILKEIVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTC 113 (425)
T ss_dssp CCEECEEEEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEE
T ss_pred hhhheeeeeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEE
Confidence 3444554 5589999999999 77 9999999999999999 8887 4555554 6779999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc
Q 018858 64 LCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA 143 (349)
Q Consensus 64 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 143 (349)
++|+|++++|++++.||.|++||. ++ ..+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~- 188 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWNK-TG---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE- 188 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEET-TS---CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCeEEEEeC-CC---CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-
Confidence 999999999999999999999993 33 4455667788999999999999999999999999999999999888887
Q ss_pred ccccc---------------eeEEEEccCCCCCC-CCCCC----------CCCccccCCceeEEeecCcccccCCCCcEE
Q 018858 144 GHSSI---------------CSSVQFIPWKPWEG-LPENN----------GNAGQCYNPAFVHAIAIPDADMLDKTNKIC 197 (349)
Q Consensus 144 ~~~~~---------------v~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (349)
.+... +.+++|+|++.+.. ..++. ...........+.+++++| ++++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l 262 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND------TNKLL 262 (425)
T ss_dssp CC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET------TTTEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC------CCCEE
Confidence 66655 89999999765431 11111 0111112346788999988 89999
Q ss_pred EEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEe
Q 018858 198 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFS 273 (349)
Q Consensus 198 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~ 273 (349)
++++.||.|++||+++.+....... ....+..++|+|++ .+++ +..++. .......+..+..|...|.++.|+
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s 339 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-KVIS-CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS 339 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-EEEE-EETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred EEEcCCCEEEEEECCCCccceEecC-CCccEEEEEECCCC-EEEE-EeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence 9999999999999998765555432 45678999999999 5553 332222 122345566777889999999999
Q ss_pred eecCCccEEEEeeCCCeEEEEecCCCcceec-----------ccccceeeecccccc--ceEEEEeecCCCCcEEEeeCC
Q 018858 274 MFGERGKYLISGGNDKLVKVWDCSRFQGVQT-----------SINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-----------~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d 340 (349)
|++++|++++.||.|++||+.+...... ......+..+..|.. .|++++|+| ++++|++++.|
T Consensus 340 ---~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 415 (425)
T 1r5m_A 340 ---QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSL 415 (425)
T ss_dssp ---TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESS
T ss_pred ---CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecC
Confidence 8999999999999999999987631000 000126677778866 999999988 88899999999
Q ss_pred CeEEEeeCC
Q 018858 341 KVVKVYSIS 349 (349)
Q Consensus 341 g~i~iw~~~ 349 (349)
|.|++|+++
T Consensus 416 g~i~iw~~~ 424 (425)
T 1r5m_A 416 QEGSVVAIP 424 (425)
T ss_dssp SCCEEEECC
T ss_pred ceEEEEeec
Confidence 999999985
No 33
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.4e-40 Score=299.67 Aligned_cols=298 Identities=16% Similarity=0.133 Sum_probs=229.0
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-----cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-----DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
....|++|.+.|++++|+|+++++|+||+.|++|++||+.+. .....+.+|...|.+++|+|++++|++|+.|+.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 445789999999999999986789999999999999998753 345678899999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec--cccccceeEEEEccCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKP 159 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~ 159 (349)
|++||+.++ ..+..+.+|...|.+++|+|++++|++++.|+.|++||+.......... .+|...|.+++|+|++
T Consensus 454 v~vwd~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~- 529 (694)
T 3dm0_A 454 LRLWDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT- 529 (694)
T ss_dssp EEEEETTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS-
T ss_pred EEEEECCCC---cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC-
Confidence 999999876 3445567788999999999999999999999999999987654332221 1678889999999931
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
....|++++.|+.|++||+++.+....... +...+.+++|+|++++
T Consensus 530 ---------------------------------~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg~~ 575 (694)
T 3dm0_A 530 ---------------------------------LQPTIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSPDGSL 575 (694)
T ss_dssp ---------------------------------SSCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSE
T ss_pred ---------------------------------CcceEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCCCE
Confidence 236899999999999999998776655443 3567899999999999
Q ss_pred EEEeeeeeecCc----eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccccccee----
Q 018858 240 DAEMEILDQSGG----KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL---- 311 (349)
Q Consensus 240 ~~~~~~~~~~~~----~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---- 311 (349)
+++ ++.|+.+. .....+..+. +...|.+++|+ |++.++++++ |+.|++||++++............
T Consensus 576 l~s-g~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s---p~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 649 (694)
T 3dm0_A 576 CAS-GGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFS---PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEK 649 (694)
T ss_dssp EEE-EETTSBCEEEETTTTEEEECCB-CSSCEEEEEEC---SSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----
T ss_pred EEE-EeCCCeEEEEECCCCceEEEec-CCCcEEEEEEc---CCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccc
Confidence 985 33333322 1233444444 34679999999 8888887765 567999999987433211000000
Q ss_pred ------eeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 312 ------IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 312 ------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.....+...+++++|+| ++++|++++.||.|++|++.
T Consensus 650 ~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 650 ADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -----------CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred ccccccccCCceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 00011122478899988 89999999999999999974
No 34
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.6e-41 Score=282.24 Aligned_cols=288 Identities=10% Similarity=0.048 Sum_probs=230.6
Q ss_pred eeCCceeeeEEEEecC---CCceEEEeCCCCcEEEEECCCCcEEEEeec-----CCCCeEEEEEecC----CCEEEEEeC
Q 018858 11 LRGHKATATCCIASRD---RPGFVASSGEDGCICWFDLRSKDVQLVTDV-----GNGPVTSLCFKSG----NEDIIYVSS 78 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~---~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~ 78 (349)
..+|.++|++++|+|+ +...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 3489999999999983 345666666677999999998877666653 5678999999998 679999999
Q ss_pred CCeEEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEecee---ccccccceeEEEE
Q 018858 79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSL---RAGHSSICSSVQF 154 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~ 154 (349)
||.|++||+.+++ .+..+..|...|.+++|+| ++++|++++.||.|++||+++++.+..+ . .|...|.+++|
T Consensus 94 dg~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~ 169 (366)
T 3k26_A 94 RGIIRIINPITMQ---CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 169 (366)
T ss_dssp TCEEEEECTTTCC---EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT-SCSSCEEEEEE
T ss_pred CCEEEEEEchhce---EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc-cccCceeEEEE
Confidence 9999999998764 3455667889999999999 8999999999999999999999888887 5 78999999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC-------------
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK------------- 221 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------- 221 (349)
+| ++++|++++.||.|++||+++++......
T Consensus 170 ~~------------------------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (366)
T 3k26_A 170 DL------------------------------------LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 213 (366)
T ss_dssp CT------------------------------------TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSC
T ss_pred CC------------------------------------CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccc
Confidence 99 78999999999999999999765432211
Q ss_pred --------------CCCCCccceeeeeccccEEEEeee------eeecCc-----------eeeeeeeeecCCCcceEEE
Q 018858 222 --------------STTKPLKGSQSTSKVNIRDAEMEI------LDQSGG-----------KRLHLDYSVGGHTAAASCV 270 (349)
Q Consensus 222 --------------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----------~~~~~~~~~~~h~~~i~~i 270 (349)
......+.+++|+ +.++++.+. ++.... .....+..+..|...|+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 291 (366)
T 3k26_A 214 FISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM 291 (366)
T ss_dssp CCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCC
T ss_pred ccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEE
Confidence 1145677888888 566664221 221111 0124466777899999999
Q ss_pred EEeeecCC--ccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc--ccceEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 271 AFSMFGER--GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL--NKKVNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 271 ~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
+|+ |+ +++|++++.||.|++||+.+++... .....+..| ...|++++|+| ++++|++++.||.|++|
T Consensus 292 ~~s---~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 292 RFS---MDFWQKMLALGNQVGKLYVWDLEVEDPHK-----AKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRW 362 (366)
T ss_dssp CCE---ECTTSSEEEEECTTSCEEEEECCSSSGGG-----CEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred EEc---CCCCCcEEEEEecCCcEEEEECCCCCCcc-----ccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEE
Confidence 999 78 9999999999999999999874321 233455566 78999999988 88999999999999999
Q ss_pred eCC
Q 018858 347 SIS 349 (349)
Q Consensus 347 ~~~ 349 (349)
|+.
T Consensus 363 d~~ 365 (366)
T 3k26_A 363 DRL 365 (366)
T ss_dssp EC-
T ss_pred Eec
Confidence 974
No 35
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-40 Score=283.19 Aligned_cols=268 Identities=15% Similarity=0.230 Sum_probs=221.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++..+.+++|.+.|++++|+|+ +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 139 ~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~ 217 (410)
T 1vyh_C 139 TGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217 (410)
T ss_dssp TCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 56788999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||++++. .+..+.+|...+.++.++|++.+|++|+.|+.|++||++++++...+. .|...|.+++|+|++.+...
T Consensus 218 ~wd~~~~~---~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~ 293 (410)
T 1vyh_C 218 MWEVQTGY---CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSI 293 (410)
T ss_dssp EEETTTCC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGG
T ss_pred EEECCCCc---EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccch
Confidence 99999764 445566788999999999999999999999999999999999988998 89999999999996433211
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
..... ...... ...+.+|++|+.|+.|++||++++........ ....+.+++|+|+++++++.
T Consensus 294 ~~~~~----------~~~~~~------~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~ 356 (410)
T 1vyh_C 294 SEATG----------SETKKS------GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSC 356 (410)
T ss_dssp GGCCS----------CC-------------CCEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSCEEEE
T ss_pred hhhcc----------cccccc------CCCCCEEEEEeCCCeEEEEECCCCceEEEEEC-CCCcEEEEEEcCCCCEEEEE
Confidence 00000 000000 11478999999999999999999887766543 35678999999999999853
Q ss_pred eeeee----cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 244 EILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 244 ~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
+.|+ +......++..+.+|...|++++|+ |++++|++|+.|+.|++|+++
T Consensus 357 -s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~---~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 357 -ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH---KTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp -ETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC---SSSSCEEEEETTSEEEEEC--
T ss_pred -eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc---CCCCEEEEEeCCCcEEEEeCC
Confidence 3332 2223445667788999999999999 899999999999999999864
No 36
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=286.76 Aligned_cols=300 Identities=15% Similarity=0.184 Sum_probs=225.9
Q ss_pred cCCCCeee-eCCceeeeEEEEec-CCCceEEEeCCCCcEEEEECCC---Cc---EEEEeecCCCCeEEEEEecCCCEEEE
Q 018858 4 AEAKPRRL-RGHKATATCCIASR-DRPGFVASSGEDGCICWFDLRS---KD---VQLVTDVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 4 ~~~~~~~l-~~h~~~i~~~~~~~-~~~~~l~t~~~dg~i~vwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~ 75 (349)
+++.++.+ ++|.+.|++++|+| + +++|++|+.||.|++||+.+ +. ....+ .|..+|.+++|+|++++|++
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 45677888 89999999999999 7 89999999999999999876 33 22333 48999999999999999999
Q ss_pred EeCCCeEEEEEcc---CCCccccee-----ec--cC--cccceEEEE--EccCCCEEEEEcCCCcEEEEEcCCceEecee
Q 018858 76 VSSGKEVKSFDVH---MPASWRPLE-----SY--NY--NKEEINQIV--CNPKSSFLACADDGGDVKIIDIRQHCLYKSL 141 (349)
Q Consensus 76 ~~~dg~i~iwd~~---~~~~~~~~~-----~~--~~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 141 (349)
++.||.|++||++ +++...... .+ .. +...+.++. +++++.+|++++.|+.|++||+++++.+..+
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence 9999999999995 332221111 11 11 345566666 5678999999999999999999999999988
Q ss_pred ccc--cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee
Q 018858 142 RAG--HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 219 (349)
Q Consensus 142 ~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 219 (349)
. . |...|.+++|+| ++++|++|+.||.|++||+++++....
T Consensus 209 ~-~~~h~~~v~~~~~s~------------------------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~ 251 (437)
T 3gre_A 209 E-NSPRHGAVSSICIDE------------------------------------ECCVLILGTTRGIIDIWDIRFNVLIRS 251 (437)
T ss_dssp E-CCGGGCCEEEEEECT------------------------------------TSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred c-cCCCCCceEEEEECC------------------------------------CCCEEEEEcCCCeEEEEEcCCccEEEE
Confidence 8 6 788999999999 799999999999999999999887776
Q ss_pred cCCCCCCcccee----eeeccccEEEEeeeeeec----Cceeeeeeee------------------------ecC--CCc
Q 018858 220 SKSTTKPLKGSQ----STSKVNIRDAEMEILDQS----GGKRLHLDYS------------------------VGG--HTA 265 (349)
Q Consensus 220 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------------------------~~~--h~~ 265 (349)
........+..+ .|++++.++++ +..|+. .......... +.+ |..
T Consensus 252 ~~~~~~~~v~~~~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 330 (437)
T 3gre_A 252 WSFGDHAPITHVEVCQFYGKNSVIVVG-GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLN 330 (437)
T ss_dssp EBCTTCEEEEEEEECTTTCTTEEEEEE-ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGG
T ss_pred EecCCCCceEEEEeccccCCCccEEEE-EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCC
Confidence 654555678888 55567888885 222221 1111122222 222 677
Q ss_pred ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc----------------------------cceeeecccc
Q 018858 266 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN----------------------------NDLLIKNINL 317 (349)
Q Consensus 266 ~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----------------------------~~~~~~~~~~ 317 (349)
.|++++|+ ++++|++|+.|+.|++||+.+++....... .........|
T Consensus 331 ~v~~l~~~----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 406 (437)
T 3gre_A 331 ALSTISVS----NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH 406 (437)
T ss_dssp GGCCEEEE----TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------
T ss_pred ceEEEEEC----CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc
Confidence 89999998 568999999999999999998764422110 0001112338
Q ss_pred ccceEEEEeecC-CCCcEEEeeCCCeEEEee
Q 018858 318 NKKVNWLCTTPT-ESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 318 ~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~ 347 (349)
.+.|+++++.+. ++.+|++++.||.|+||+
T Consensus 407 ~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 407 HDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 999999999985 366999999999999995
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-41 Score=289.06 Aligned_cols=296 Identities=9% Similarity=-0.017 Sum_probs=238.2
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC----CcEEEEeecCCCCeEEEEEecC-CCEEEEEeCCCeEEEEEc
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS----KDVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~ 87 (349)
.|...|++++|+|+ +++|++++.||.|++||+.+ .+.+..+..|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus 65 ~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 65 QVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred ecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 58899999999998 89999999999999999987 4578888999999999999998 899999999999999999
Q ss_pred cCCC------cccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceecccc------ccceeEEEE
Q 018858 88 HMPA------SWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGH------SSICSSVQF 154 (349)
Q Consensus 88 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~ 154 (349)
++++ ....+.....|...+.+++|+|+ +.+|++++.||.|++||+++++.+..+. .+ ...+.+++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS-YTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC-CCCCSSCCCCCEEEEEE
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe-ccccccccCCceEEEEE
Confidence 9765 33333345667889999999999 7899999999999999999999888887 54 788999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC---eEEEEEccCceeeeecCC-CCCCccce
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKS-TTKPLKGS 230 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~-~~~~~~~~ 230 (349)
+|+ ...++++++.|+ .|++||+++......... .....+..
T Consensus 223 ~~~-----------------------------------~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 223 HPK-----------------------------------NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267 (416)
T ss_dssp CSS-----------------------------------CTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEE
T ss_pred CCC-----------------------------------CCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeE
Confidence 993 246899999998 999999998643333333 55678999
Q ss_pred eeeec-cccEEEEeee---eeecCceeeeeeeeecCCCcceEEEEEeeecCCc-cEEEEeeCCCeEEEEecCCCcceecc
Q 018858 231 QSTSK-VNIRDAEMEI---LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 231 ~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~ 305 (349)
++|+| +++++++.+. ...+.....+.+..+.+|...|.+++|+ |++ .+|++++.|+.|++||+.+.......
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s---~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 344 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA---PEAPDLFACASFDNKIEVQTLQNLTNTLDE 344 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEEC---TTCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEEC---CCCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence 99999 8888885332 1222333456677888999999999999 888 89999999999999999886533211
Q ss_pred cc--------cce------------------eeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 306 IN--------NDL------------------LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 306 ~~--------~~~------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.. ... +.....|...+.+++|+| +|++|++++.|+.|+||++.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 345 QETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp ----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBCTTSSCBCCBCCC
T ss_pred ccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEeCCCCeEEEEEec
Confidence 00 000 011122677888999988 89999999999999999974
No 38
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.2e-40 Score=274.87 Aligned_cols=267 Identities=15% Similarity=0.150 Sum_probs=217.3
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----cEEEEeecCCCCeEEEEEec--CCCEEEEEeCCC
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGK 80 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg 80 (349)
..+.+.+|.+.|++++|+|+ +++|++|+.||.|++||+.++ +....+.+|..+|.+++|+| ++++|++++.||
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CCCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 35677899999999999998 899999999999999999876 45677889999999999999 699999999999
Q ss_pred eEEEEEccCCCcc------cceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCceEeceec----------
Q 018858 81 EVKSFDVHMPASW------RPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLYKSLR---------- 142 (349)
Q Consensus 81 ~i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------- 142 (349)
.|++||+++++.. ..+..+..|...|.+++|+|+ +++|++++.||.|++||+++++.+..+.
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 9999999875321 345667778899999999999 9999999999999999999876655443
Q ss_pred --cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec
Q 018858 143 --AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 220 (349)
Q Consensus 143 --~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 220 (349)
..+...+.+++|+|+. .++.++++++.++.+.+|+...+.
T Consensus 162 ~~~~~~~~~~~~~~~p~~---------------------------------~~~~~l~~~~~~~~~~~~~~~~~~----- 203 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSR---------------------------------FSPEKLAVSALEQAIIYQRGKDGK----- 203 (351)
T ss_dssp CCSSCSCCCEEEEECCCS---------------------------------SSCCEEEEEETTEEEEEEECTTSC-----
T ss_pred ccCCcccceeEEEeccCC---------------------------------CCCcEEEEecCCCcEEEEccCCCc-----
Confidence 1345566777777620 038899999999999777776531
Q ss_pred CCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCc----cEEEEeeCCCeEEEEec
Q 018858 221 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG----KYLISGGNDKLVKVWDC 296 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~----~~l~s~~~d~~i~vwd~ 296 (349)
......+.+|...|++++|+ |++ ++|++++.||.|++||+
T Consensus 204 ---------------------------------~~~~~~~~~h~~~i~~~~~~---p~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 204 ---------------------------------LHVAAKLPGHKSLIRSISWA---PSIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp ---------------------------------EEEEEECCCCCSCEEEEEEC---CCSSCSSEEEEEEETTSCEEEEEE
T ss_pred ---------------------------------eeeeeecCCCCcceeEEEEC---CCCCCcceEEEEEcCCCeEEEEeC
Confidence 23456778899999999999 787 89999999999999999
Q ss_pred CCCcceec-------------------------------------ccccceeeeccccccceEEEEeecCCCCcEEEeeC
Q 018858 297 SRFQGVQT-------------------------------------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 297 ~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
........ ......+..+.+|...|++++|+| ++++|++++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~ 326 (351)
T 3f3f_A 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGD 326 (351)
T ss_dssp EECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEET
T ss_pred CCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecC
Confidence 87422110 001245566778999999999988 8889999999
Q ss_pred CCeEEEeeCC
Q 018858 340 SKVVKVYSIS 349 (349)
Q Consensus 340 dg~i~iw~~~ 349 (349)
||.|++|+++
T Consensus 327 dg~v~iw~~~ 336 (351)
T 3f3f_A 327 DGKVRLWKAT 336 (351)
T ss_dssp TSCEEEEEEC
T ss_pred CCcEEEEecC
Confidence 9999999974
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-41 Score=287.94 Aligned_cols=287 Identities=11% Similarity=0.115 Sum_probs=235.0
Q ss_pred CceeeeEEEEecCCCceEEEe----------CCCCcEEEEECCCCc---EEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 14 HKATATCCIASRDRPGFVASS----------GEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~----------~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
+...|.+++|+|++..+|++| +.|+.|++||+.+++ .+..+ .|...|.+++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 456899999999943499999 889999999998775 33333 4889999999999999999999999
Q ss_pred eEEEEEccCCCc-ccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCce------Eece---eccccccce
Q 018858 81 EVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHC------LYKS---LRAGHSSIC 149 (349)
Q Consensus 81 ~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~---~~~~~~~~v 149 (349)
.|++||+.+... ...+..+..|...|.+++|+|+ +++|++++.|+.|++||+++++ .... +. .|...+
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v 168 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM-SSVDEV 168 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC-CSSCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc-CCCCCe
Confidence 999999986221 2356667788899999999998 8999999999999999999776 3222 34 688899
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC-----
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT----- 224 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----- 224 (349)
.+++|+|+ .+.+|++++.||.|++||+++++.........
T Consensus 169 ~~~~~~~~-----------------------------------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 213 (416)
T 2pm9_A 169 ISLAWNQS-----------------------------------LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI 213 (416)
T ss_dssp CEEEECSS-----------------------------------CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCC
T ss_pred eEEEeCCC-----------------------------------CCcEEEEEcCCCCEEEEECCCCCcceEEecccccccc
Confidence 99999992 27899999999999999999988777665543
Q ss_pred CCccceeeeeccccEEEEeeeeee---cCce----e-eeeeeeec-CCCcceEEEEEeeecC-CccEEEEeeCCCeEEEE
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILDQ---SGGK----R-LHLDYSVG-GHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVW 294 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~-~~~~~~~~-~h~~~i~~i~~~~~~~-~~~~l~s~~~d~~i~vw 294 (349)
...+..++|+|++..+++.+..+. .+.. . ......+. +|...|.+++|+ | ++++|++++.|+.|++|
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC---HQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEEC---SSCSSCEEEEESSSEEEEE
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeC---CCCCCeEEEEeCCCCEEEe
Confidence 678999999999854333444443 2221 1 13455666 899999999999 7 89999999999999999
Q ss_pred ecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 295 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|++++ ..+..+..|...|++++|+|..+++|++++.||.|++|+++
T Consensus 291 d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 291 NPESA---------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp CSSSC---------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred eCCCC---------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 99987 56677788999999999998433899999999999999974
No 40
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-40 Score=271.43 Aligned_cols=244 Identities=20% Similarity=0.231 Sum_probs=214.7
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
...+.+|...|.+++|+++ +.++++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.++.|++|++
T Consensus 73 ~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 73 QWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeeccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 4568899999999999998 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
++++.. ..+..+...+.+++|+|++++|++|+.||.|++||+++++.+..+. +|...|.+++|+|
T Consensus 152 ~~~~~~---~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp----------- 216 (321)
T 3ow8_A 152 ESGKKE---YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSP----------- 216 (321)
T ss_dssp TTCSEE---EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECT-----------
T ss_pred CCCcee---EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcC-----------
Confidence 976433 3444566789999999999999999999999999999999999999 8999999999999
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
++++|++|+.||.|++||++.......+.. ....+..++|+|+++++++ ++.|
T Consensus 217 -------------------------d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s-~s~D 269 (321)
T 3ow8_A 217 -------------------------DSQLLVTASDDGYIKIYDVQHANLAGTLSG-HASWVLNVAFCPDDTHFVS-SSSD 269 (321)
T ss_dssp -------------------------TSCEEEEECTTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEE-EETT
T ss_pred -------------------------CCCEEEEEcCCCeEEEEECCCcceeEEEcC-CCCceEEEEECCCCCEEEE-EeCC
Confidence 799999999999999999998766655443 4567889999999999885 3333
Q ss_pred ec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 248 QS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 248 ~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
+. ......++..+.+|...|.+++|+ |++++|++++.|+.|++||++
T Consensus 270 ~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s---~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 270 KSVKVWDVGTRTCVHTFFDHQDQVWGVKYN---GNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTCCEEEEECC
T ss_pred CcEEEEeCCCCEEEEEEcCCCCcEEEEEEC---CCCCEEEEEeCCCeEEEEeCC
Confidence 32 222446677888999999999999 899999999999999999974
No 41
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.2e-40 Score=269.63 Aligned_cols=249 Identities=12% Similarity=0.169 Sum_probs=208.0
Q ss_pred cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEE
Q 018858 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128 (349)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (349)
+...++.+|...|.+++|+|++++|++++.||.|++||++++. .+..+..|...+.+++|+|++++|++|+.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 3467889999999999999999999999999999999998763 4455666788999999999999999999999999
Q ss_pred EEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEE
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV 208 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 208 (349)
+||+++++.+..+. +|...|.+++|+| ++++|++|+.||+|++
T Consensus 81 vwd~~~~~~~~~~~-~h~~~v~~~~~~~------------------------------------~~~~l~sgs~D~~v~l 123 (304)
T 2ynn_A 81 VFNYNTGEKVVDFE-AHPDYIRSIAVHP------------------------------------TKPYVLSGSDDLTVKL 123 (304)
T ss_dssp EEETTTCCEEEEEE-CCSSCEEEEEECS------------------------------------SSSEEEEEETTSCEEE
T ss_pred EEECCCCcEEEEEe-CCCCcEEEEEEcC------------------------------------CCCEEEEECCCCeEEE
Confidence 99999999999999 9999999999999 7899999999999999
Q ss_pred EEccCceeeeecCCCCCCccceeeeec-cccEEEEeeeeeecCce----eeeeeee-ecCCCcceEEEEEeeecCCccEE
Q 018858 209 INIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILDQSGGK----RLHLDYS-VGGHTAAASCVAFSMFGERGKYL 282 (349)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~-~~~h~~~i~~i~~~~~~~~~~~l 282 (349)
||++++.............+.+++|+| ++..+++ ++.|+.+.. ....... ..+|...+..+.++|. +++++|
T Consensus 124 Wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s-gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l 201 (304)
T 2ynn_A 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-PDKPYM 201 (304)
T ss_dssp EEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE-EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-TTCCEE
T ss_pred EECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE-EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-CCCCEE
Confidence 999987554444445567889999999 5677774 443333211 1112222 2356678999999842 377899
Q ss_pred EEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 283 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 283 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++++.|+.|++||++++ ..+..+.+|...|.+++|+| ++.+|++++.||.|++||++
T Consensus 202 ~s~s~D~~i~iWd~~~~---------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 202 ITASDDLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETT
T ss_pred EEEcCCCeEEEEeCCCC---------ccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECC
Confidence 99999999999999987 67778889999999999988 77899999999999999974
No 42
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.1e-39 Score=276.75 Aligned_cols=318 Identities=13% Similarity=0.071 Sum_probs=247.9
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
+..+.+..| ..+....|+|+ +++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iw 166 (420)
T 3vl1_A 89 DGSKMLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 166 (420)
T ss_dssp ETTTTSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeeEEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEE
Confidence 344555555 44455567777 8999999999999999999999888888999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc--ccccceeEEEEccCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~ 163 (349)
|+++++. +..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.. .+...+.+++|.|...-
T Consensus 167 d~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 240 (420)
T 3vl1_A 167 SVKDGSN---PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR--- 240 (420)
T ss_dssp ETTTCCC---CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS---
T ss_pred eCCCCcC---ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc---
Confidence 9997644 345567889999999999999999999999999999999998887761 35677899999874211
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecccc-EEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI-RDAE 242 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 242 (349)
.........+.+++++| ++++|++++.||.|++||+++++............+.+++|+|+++ ++++
T Consensus 241 ------~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 241 ------QLHEISTSKKNNLEFGT------YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp ------SCGGGCCCCCCTTCSSC------TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred ------eeeecccCcccceEEcC------CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEE
Confidence 11222345567777877 8999999999999999999998877777666778899999999999 6664
Q ss_pred eeeeeecCc----eee-eeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 243 MEILDQSGG----KRL-HLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 243 ~~~~~~~~~----~~~-~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
+..++.+. ... .++..+.. |...|.++.+ +++++|++++.|+.|++|++....................
T Consensus 309 -g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 383 (420)
T 3vl1_A 309 -GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF----AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVS 383 (420)
T ss_dssp -EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE----ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECC
T ss_pred -EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe----CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEcc
Confidence 43333221 111 22445555 6678888855 4788999999999999999987533221111122234567
Q ss_pred cccceEEEEeecCCCC---cEEEeeCCCeEEEeeCC
Q 018858 317 LNKKVNWLCTTPTESE---NLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~---~l~~~~~dg~i~iw~~~ 349 (349)
|...|.+++|+| +++ .|++++.+|.+.+|+++
T Consensus 384 ~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 384 NDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEESC
T ss_pred CCcceEEEEEcc-CCCCcceEEEEcCCceEEEEecc
Confidence 889999999998 776 68888899999999975
No 43
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.8e-40 Score=284.18 Aligned_cols=291 Identities=14% Similarity=0.105 Sum_probs=217.5
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE--EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEV 82 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 82 (349)
...+...+|...|+|++|+|.++++||+|+.||.|+|||+.+++. ...+.+|...|++++|+| ++++|++++.||+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 445667789999999999997688999999999999999987654 445668999999999998 68899999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
++||++++. ...+.....+...+.+++|+|++++|++|+.||.|++||++. +.+..+. +|...|.+++|+|+
T Consensus 190 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~-~h~~~v~~v~~~p~----- 261 (435)
T 4e54_B 190 RLQDFKGNI-LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR-MHKKKVTHVALNPC----- 261 (435)
T ss_dssp EEEETTSCE-EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB-CCSSCEEEEEECTT-----
T ss_pred EEeeccCCc-eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe-cccceEEeeeecCC-----
Confidence 999998542 233333333445678999999999999999999999999864 4567778 89999999999994
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec--CCCCCCccceeeeeccccEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS--KSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 240 (349)
...+|++|+.|+.|++||+++.+..... ...+...+.+++|+|+|.+|
T Consensus 262 ------------------------------~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 311 (435)
T 4e54_B 262 ------------------------------CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARL 311 (435)
T ss_dssp ------------------------------CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEE
T ss_pred ------------------------------CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCee
Confidence 3458889999999999999876544332 23346778999999999999
Q ss_pred EEeeeeeecCc----eeeeeeeeecCCCc------ceEEEEEeeecCCccEEEEee------------CCCeEEEEecCC
Q 018858 241 AEMEILDQSGG----KRLHLDYSVGGHTA------AASCVAFSMFGERGKYLISGG------------NDKLVKVWDCSR 298 (349)
Q Consensus 241 ~~~~~~~~~~~----~~~~~~~~~~~h~~------~i~~i~~~~~~~~~~~l~s~~------------~d~~i~vwd~~~ 298 (349)
++ +..|+.+. ........+..|.. .+....|+ |++.++++++ .++.|++||..+
T Consensus 312 ~s-~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~ 387 (435)
T 4e54_B 312 LT-TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH---PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS 387 (435)
T ss_dssp EE-EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC---SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred EE-EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc---CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence 85 33333221 11222222222221 22334555 5555555543 346799999998
Q ss_pred Ccceecccccceeee-ccccccceEEE-EeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 299 FQGVQTSINNDLLIK-NINLNKKVNWL-CTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 299 ~~~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+ ..+.. ..+|...|.++ +|+| ++++|++|+ |+.|+||+++
T Consensus 388 g---------~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 388 G---------KMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp C---------CEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC
T ss_pred C---------cEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECC
Confidence 7 44433 45688889888 5777 888888765 8899999974
No 44
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2e-39 Score=300.20 Aligned_cols=291 Identities=15% Similarity=0.135 Sum_probs=249.7
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+..+.|++|.+.|++++|+|+ +.+|++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.|++
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred cccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 4678899999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
||+.+++ .+..+..|...|++++|+|++++|++++.||.|++||++++ .....+. +|...+.+++|+|+
T Consensus 82 w~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~------ 151 (814)
T 3mkq_A 82 FNYNTGE---KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPK------ 151 (814)
T ss_dssp EETTTCC---EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETT------
T ss_pred EECCCCc---EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcC------
Confidence 9999764 34455668899999999999999999999999999999976 6667777 89999999999994
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec--cccEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK--VNIRDA 241 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 241 (349)
+++.|++++.||.|++||++++.............+..++|+| ++.+++
T Consensus 152 -----------------------------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 152 -----------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp -----------------------------EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred -----------------------------CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 5789999999999999999887766666666667889999999 898888
Q ss_pred Eeeeeee----cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 242 EMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 242 ~~~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
+.+ .++ +..........+.+|...|.++.|+ |+++++++++.||.|++||+.++ ..+.....|
T Consensus 203 ~~~-~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~ 269 (814)
T 3mkq_A 203 TAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH---PTLPIIISGSEDGTLKIWNSSTY---------KVEKTLNVG 269 (814)
T ss_dssp EEC-TTSEEEEEETTTTEEEEEEECCSSCEEEEEEC---SSSSEEEEEETTSCEEEEETTTC---------SEEEEECCS
T ss_pred EEe-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc---CCCCEEEEEeCCCeEEEEECCCC---------cEEEEeecC
Confidence 532 222 1222335566778899999999999 89999999999999999999987 666677788
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
...+.+++|+|.....+++++.|+.+.+|++
T Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 270 LERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp SSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred CCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 8999999999844344466667778888875
No 45
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2e-39 Score=267.41 Aligned_cols=247 Identities=18% Similarity=0.181 Sum_probs=209.8
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
.+++.+++|...|.+++|+|+ +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 56 ~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred ccceEEeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 356789999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccC------CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPK------SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
|++. ..+..+.+|...+.++++.|. +..+++++.|+.|++||+++.+....+. +|...|.+++|+|
T Consensus 135 d~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp--- 206 (319)
T 3frx_A 135 TIKG----QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASP--- 206 (319)
T ss_dssp ETTS----CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECT---
T ss_pred ECCC----CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcC---
Confidence 9973 345566778899999999985 4489999999999999999999888888 8999999999999
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
++++|++++.||.|++||+++.+....... ...+..++|+|++.+
T Consensus 207 ---------------------------------~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~ 251 (319)
T 3frx_A 207 ---------------------------------DGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYW 251 (319)
T ss_dssp ---------------------------------TSSEEEEEETTCEEEEEETTTTEEEEEEEC--CSCEEEEEECSSSSE
T ss_pred ---------------------------------CCCEEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEcCCCCE
Confidence 899999999999999999999877766554 357899999999999
Q ss_pred EEEeeeeeecCc--eeeeeeeee--------cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 240 DAEMEILDQSGG--KRLHLDYSV--------GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 240 ~~~~~~~~~~~~--~~~~~~~~~--------~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
+++.......+. ........+ ..|...+.+++|+ |+|++|++|+.|+.|+|||+.+.
T Consensus 252 la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---pdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 252 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS---ADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC---TTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEEC---CCCCEEEEeecCceEEEEEEeec
Confidence 986432211110 011111111 2356679999999 99999999999999999998763
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.1e-39 Score=310.49 Aligned_cols=288 Identities=16% Similarity=0.163 Sum_probs=247.0
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
....+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 44567899999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
+.+++ .+..+..|...|.+++|+| ++.++++|+.|+.|++||+++++++..+. +|...|.+++|+|
T Consensus 686 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp-------- 753 (1249)
T 3sfz_A 686 SATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSP-------- 753 (1249)
T ss_dssp TTTCC---EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECS--------
T ss_pred CCCCc---eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec-CCCCCEEEEEEec--------
Confidence 99864 4455667889999999999 45689999999999999999999999998 8999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC------------CCCCccceee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS------------TTKPLKGSQS 232 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~~~~~~~~~~ 232 (349)
++++|++++.||.|++||++++........ .....+.+++
T Consensus 754 ----------------------------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1249)
T 3sfz_A 754 ----------------------------DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805 (1249)
T ss_dssp ----------------------------STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred ----------------------------CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence 799999999999999999998765543321 1233678899
Q ss_pred eeccccEEEEeeeeeecC--ceeeeeeee-ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccc
Q 018858 233 TSKVNIRDAEMEILDQSG--GKRLHLDYS-VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 309 (349)
|+|+|+.+++.+...... ......... ..+|...|.+++|+ |+++++++++.|+.|++||+.++ .
T Consensus 806 ~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~~~~~dg~v~vwd~~~~---------~ 873 (1249)
T 3sfz_A 806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS---PYDHLAVIALSQYCVELWNIDSR---------L 873 (1249)
T ss_dssp BCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC---SSTTEEEEECSSSCEEEEETTTT---------E
T ss_pred ECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc---CCCCEEEEEeCCCeEEEEEcCCC---------c
Confidence 999999998644221111 111122222 34788999999999 89999999999999999999987 6
Q ss_pred eeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 310 LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+....+|...|.+++|+| ++++|++++.||.|++|++
T Consensus 874 ~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 874 KVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEH
T ss_pred eeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEc
Confidence 6677889999999999988 8889999999999999985
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-40 Score=287.56 Aligned_cols=298 Identities=12% Similarity=0.043 Sum_probs=217.2
Q ss_pred eeeeCCceeeeEEEEecCC-C-------ceEEE-------------------eCCCCcEEEEECCCCcE----EEEeecC
Q 018858 9 RRLRGHKATATCCIASRDR-P-------GFVAS-------------------SGEDGCICWFDLRSKDV----QLVTDVG 57 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~-~-------~~l~t-------------------~~~dg~i~vwd~~~~~~----~~~~~~~ 57 (349)
..+. +.+.|.+++|+|++ + ++||+ ++.|++|+|||+.+++. ...+.+|
T Consensus 128 ~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~ 206 (524)
T 2j04_B 128 FIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS 206 (524)
T ss_dssp EEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEEC
T ss_pred EEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEec
Confidence 3444 67899999999973 1 56655 55789999999987764 2456778
Q ss_pred CCCeEEEEEecC------CCEEEEEeCCCeEEEEEccCCCcc--------cceeeccCcccceEEEEEccCCCEEEEEcC
Q 018858 58 NGPVTSLCFKSG------NEDIIYVSSGKEVKSFDVHMPASW--------RPLESYNYNKEEINQIVCNPKSSFLACADD 123 (349)
Q Consensus 58 ~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 123 (349)
.+.|..++|+|+ +.+||+++.||+|++||+..+... .+...+.+|...|++++|+++ ..|++|+.
T Consensus 207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~ 285 (524)
T 2j04_B 207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFK 285 (524)
T ss_dssp CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEET
T ss_pred CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeC
Confidence 899999999996 579999999999999999865422 123356678899999999986 48999999
Q ss_pred CCcEEEEEcCCce-EeceeccccccceeEE--EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC-cEEEE
Q 018858 124 GGDVKIIDIRQHC-LYKSLRAGHSSICSSV--QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVV 199 (349)
Q Consensus 124 dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 199 (349)
||.|++||++++. +...+. +|...|.++ .|+| ++ .+|++
T Consensus 286 DgtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~------------------------------------~g~~~laS 328 (524)
T 2j04_B 286 NGFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSD------------------------------------FEDTVVST 328 (524)
T ss_dssp TSEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCT------------------------------------TSCCEEEE
T ss_pred CCEEEEEECCCCCCceEEee-cccccEEEEEEEcCC------------------------------------CCCeEEEE
Confidence 9999999999764 444577 899999999 4666 66 89999
Q ss_pred EcCCCeEEEEEccCceeeeecCCCCC-CccceeeeeccccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEee
Q 018858 200 AKGDGVVDVINIESELNISRSKSTTK-PLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSM 274 (349)
Q Consensus 200 ~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~ 274 (349)
++.|++|++||+++.+.......... ..+.+++|+|+++.+++.+ .+.. ......+...+.+|.+.|++++|+
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S- 406 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAVHPLVSRETTITAIGVS- 406 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCCEEEEECSSCEEEEECC-
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccceeeecCCCceEEEEeC-
Confidence 99999999999998765443332222 3478899999999887533 2221 112233445677899999999999
Q ss_pred ecCCccEEEEeeCCCeEEEEecCCCcc--------------eecc---c------------------ccceeeecccccc
Q 018858 275 FGERGKYLISGGNDKLVKVWDCSRFQG--------------VQTS---I------------------NNDLLIKNINLNK 319 (349)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~vwd~~~~~~--------------~~~~---~------------------~~~~~~~~~~~~~ 319 (349)
|++++|++|+.|++|++||+..... +... . ....+..+.+|..
T Consensus 407 --p~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~ 484 (524)
T 2j04_B 407 --RLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI 484 (524)
T ss_dssp --SSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCC
T ss_pred --CCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc
Confidence 8999999999999999999753210 0000 0 1223445667899
Q ss_pred ceEEEEeecCC--CCcEEEeeCCCeEEEeeCC
Q 018858 320 KVNWLCTTPTE--SENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 320 ~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~ 349 (349)
.|++++|+|.. +.++++|+.||.|+||++.
T Consensus 485 ~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 485 NITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp SCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred eEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 99999999942 4589999999999999974
No 48
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.5e-39 Score=267.19 Aligned_cols=246 Identities=15% Similarity=0.262 Sum_probs=212.0
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 79 (349)
+++.+..+..|...|.+++|+|+ +++|++|+.|+.+++|++.+.+ ....+.+|...|.++.|++++. +++++.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d 163 (340)
T 1got_B 86 TTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD 163 (340)
T ss_dssp TCCEEEEEECSSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT
T ss_pred CCCcceEeecCCccEEEEEECCC-CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC
Confidence 45667888999999999999998 8999999999999999998653 4667889999999999998775 8899999
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
+.|++||++++ ..+..+.+|...|.+++|+|++++|++|+.|+.|++||++++++...+. +|...|.+++|+|
T Consensus 164 ~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p--- 236 (340)
T 1got_B 164 TTCALWDIETG---QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFP--- 236 (340)
T ss_dssp SCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECT---
T ss_pred CcEEEEECCCC---cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcC---
Confidence 99999999876 3455667788999999999999999999999999999999999999998 8999999999999
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-CCCccceeeeecccc
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSKVNI 238 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 238 (349)
++++|++|+.||.|++||++..+........ ....+.+++|+|+|+
T Consensus 237 ---------------------------------~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 237 ---------------------------------NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp ---------------------------------TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred ---------------------------------CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 7999999999999999999987766554432 334688999999999
Q ss_pred EEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 239 RDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 239 ~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
++++ +..++. ..........+.+|...|.+++|+ |++++|++|+.|+.|+|||
T Consensus 284 ~l~~-g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s---~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 284 LLLA-GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT---DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEE-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC---TTSSCEEEEETTSCEEEEC
T ss_pred EEEE-ECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc---CCCCEEEEEcCCccEEecC
Confidence 9985 332222 222345566788999999999999 8999999999999999997
No 49
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=266.78 Aligned_cols=242 Identities=13% Similarity=0.112 Sum_probs=195.2
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE----EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL----VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
.|...|.+++|+|+ ..|++|+.||+|++||+++++.+. .+.+|...|.+++|+|++++|++|+.|+.|++||++
T Consensus 80 ~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 80 QTEAGVADLTWVGE--RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EESSCEEEEEEETT--TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ccCCCEEEEEEeCC--CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 36678999999997 468899999999999999887533 345799999999999999999999999999999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
++ +.+..+.+|...|++++|+|++ .+|++++.|+.|++||+++++....+. ..+...+.+++|+|+
T Consensus 158 ~~---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~--------- 225 (344)
T 4gqb_B 158 QQ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ--------- 225 (344)
T ss_dssp TT---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS---------
T ss_pred CC---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC---------
Confidence 76 4556777899999999999988 578999999999999999988877664 134557889999984
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
++++|++|+.||.|++||+++++.+..+.. ....+.+++|+|++..++++++.
T Consensus 226 --------------------------~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~fsp~g~~~lasgs~ 278 (344)
T 4gqb_B 226 --------------------------QSEVFVFGDENGTVSLVDTKSTSCVLSSAV-HSQCVTGLVFSPHSVPFLASLSE 278 (344)
T ss_dssp --------------------------CTTEEEEEETTSEEEEEESCC--CCEEEEC-CSSCEEEEEECSSSSCCEEEEET
T ss_pred --------------------------CCcceEEeccCCcEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCeEEEEEeC
Confidence 578899999999999999998877665543 35678999999998654435554
Q ss_pred eecCc----eeeeeeeeecCCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCC
Q 018858 247 DQSGG----KRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 247 ~~~~~----~~~~~~~~~~~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~ 299 (349)
|+.+. ...+ +..+.+|.+.|++++|+ |+++ +|++++.|++|++|++.+.
T Consensus 279 D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~s---p~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 279 DCSLAVLDSSLSE-LFRSQAHRDFVRDATWS---PLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp TSCEEEECTTCCE-EEEECCCSSCEEEEEEC---SSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCeEEEEECCCCc-EEEEcCCCCCEEEEEEe---CCCCeEEEEEcCCCeEEEEECCCC
Confidence 44322 2222 34568899999999999 7775 6779999999999999875
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-39 Score=279.10 Aligned_cols=277 Identities=12% Similarity=0.094 Sum_probs=223.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
.+++++|+|+ +++|++++.||.|++||+.+++....+..| ..+....|+|++++|++++.||.|++||++++ ...
T Consensus 58 ~~~~~~~s~~-g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~ 132 (420)
T 3vl1_A 58 AGKGNTFEKV-GSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---LQR 132 (420)
T ss_dssp CCTTCEEEEE-ETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC---EEE
T ss_pred cccceeeeec-CCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc---cee
Confidence 3557899999 899999999999999999877665555555 44455578999999999999999999999865 344
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCC
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
..+..|...|++++|+|++++|++++.|+.|++||+++++.+..+. +|...|.+++|+|
T Consensus 133 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~-------------------- 191 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIID-------------------- 191 (420)
T ss_dssp EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-CCSSCEEEEEEET--------------------
T ss_pred eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-CCCCcEEEEEEcC--------------------
Confidence 5566788999999999999999999999999999999999888898 8999999999999
Q ss_pred ceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-----------------------CCCccceeee
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-----------------------TKPLKGSQST 233 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~ 233 (349)
++++|++++.||.|++||+++++........ ....+..++|
T Consensus 192 ----------------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 192 ----------------RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp ----------------TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred ----------------CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence 7899999999999999999988776655432 1355667888
Q ss_pred eccccEEEEeeeeeecC----ceeeeeeee-ecCCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCCcceecccc
Q 018858 234 SKVNIRDAEMEILDQSG----GKRLHLDYS-VGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~ 307 (349)
+|+++++++ +..++.+ ......... ...|...|.+++|+ |+++ +|++++.||.|++||+++++
T Consensus 256 s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~g~~dg~i~vwd~~~~~------- 324 (420)
T 3vl1_A 256 GTYGKYVIA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVD---GNNANYIYAGYENGMLAQWDLRSPE------- 324 (420)
T ss_dssp SCTTEEEEE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEEC---SSCTTEEEEEETTSEEEEEETTCTT-------
T ss_pred cCCCCEEEE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEe---CCCCCEEEEEeCCCeEEEEEcCCCc-------
Confidence 999999985 3323221 112222223 34588899999999 8888 99999999999999999864
Q ss_pred cceeeeccc-cccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 308 NDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 308 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+..+.. |...+.++.+ + ++++|++++.||.|++|+++
T Consensus 325 -~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 325 -CPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp -SCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEEC
T ss_pred -CchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEecc
Confidence 22334444 6777888755 5 66799999999999999963
No 51
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-38 Score=268.22 Aligned_cols=253 Identities=14% Similarity=0.192 Sum_probs=215.7
Q ss_pred cCCCCeeeeC-CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 4 AEAKPRRLRG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~-h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+++..+.+.. |...|++++|+|+ +++|++|+.||.|++||+.+++.+..+..|...|.+++|+ ++++++++.||.|
T Consensus 122 ~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i 198 (401)
T 4aez_A 122 SGSVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAI 198 (401)
T ss_dssp TCCEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEE
T ss_pred CCcEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCE
Confidence 3445555555 8899999999998 8999999999999999999999999999999999999994 6799999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
++||++... ..+..+..|...|.+++|+|++++|++|+.|+.|++||+++++.+..+. .|...|.+++|+|+
T Consensus 199 ~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~----- 270 (401)
T 4aez_A 199 HHHDVRIAN--HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPW----- 270 (401)
T ss_dssp EEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTT-----
T ss_pred EEEecccCc--ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-CCcceEEEEEECCC-----
Confidence 999998532 3455566788999999999999999999999999999999999888888 89999999999994
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc--CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
...++++++ .|+.|++||++++
T Consensus 271 ------------------------------~~~ll~~~~gs~d~~i~i~d~~~~-------------------------- 294 (401)
T 4aez_A 271 ------------------------------QSNLLATGGGTMDKQIHFWNAATG-------------------------- 294 (401)
T ss_dssp ------------------------------STTEEEEECCTTTCEEEEEETTTC--------------------------
T ss_pred ------------------------------CCCEEEEecCCCCCEEEEEECCCC--------------------------
Confidence 346777765 7999999999874
Q ss_pred EEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEE--eeCCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 241 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS--GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s--~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
..+..+. +...|.++.|+ |+++++++ |+.||.|++||+.++.. .......+|.
T Consensus 295 --------------~~~~~~~-~~~~v~~~~~s---~~~~~l~~~~g~~dg~i~v~~~~~~~~-------~~~~~~~~h~ 349 (401)
T 4aez_A 295 --------------ARVNTVD-AGSQVTSLIWS---PHSKEIMSTHGFPDNNLSIWSYSSSGL-------TKQVDIPAHD 349 (401)
T ss_dssp --------------CEEEEEE-CSSCEEEEEEC---SSSSEEEEEECTTTCEEEEEEEETTEE-------EEEEEEECCS
T ss_pred --------------CEEEEEe-CCCcEEEEEEC---CCCCeEEEEeecCCCcEEEEecCCccc-------eeEEEecCCC
Confidence 2333343 55689999999 89999998 44899999999988632 2333456899
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..|.+++|+| ++++|++++.||.|++|++.
T Consensus 350 ~~v~~~~~s~-dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 350 TRVLYSALSP-DGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp SCCCEEEECT-TSSEEEEECTTSEEEEEECC
T ss_pred CCEEEEEECC-CCCEEEEEeCCCcEEEEECC
Confidence 9999999988 88899999999999999974
No 52
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=264.41 Aligned_cols=247 Identities=18% Similarity=0.197 Sum_probs=203.4
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 89 (349)
.+|.+.|.+++|+|+ +++|++|+.|+.+++||+..+. .+..+.+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 58 ~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp SSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred cccCCcEEEEEECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 689999999999998 8999999999999999988764 4678899999999999999999999999999999999987
Q ss_pred CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce--EeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
+.....+..+..|...|.+++|+|++++|++++.|+.|++||+++++ +...+. +|...|.+++|+|
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp----------- 204 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDP----------- 204 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECT-----------
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECC-----------
Confidence 66556667778888999999999999999999999999999998765 446777 8999999999999
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce---------------eeeecCCCCCCccceee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL---------------NISRSKSTTKPLKGSQS 232 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~~~~~~ 232 (349)
++++|++++.|++|++||..... ............+..++
T Consensus 205 -------------------------~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 259 (345)
T 3fm0_A 205 -------------------------SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259 (345)
T ss_dssp -------------------------TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEE
T ss_pred -------------------------CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEE
Confidence 89999999999999999974321 12223333556788999
Q ss_pred eeccccEEEEeeeeeecCce------------ee-eeeeeecCCCcceEEEEEeeecCCc-cEEEEeeCCCeEEEEecCC
Q 018858 233 TSKVNIRDAEMEILDQSGGK------------RL-HLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~~d~~i~vwd~~~ 298 (349)
|+|++..+++.+ .|..+.. .. .......+|...|++++|+ |++ .+|++|+.||.|++|++.+
T Consensus 260 ~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~---p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 260 WCQLTGALATAC-GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN---PKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp ECTTTCCEEEEE-TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC---SSSTTEEEEEETTSCEEEEEECC
T ss_pred EecCCCEEEEEe-CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe---CCCceEEEEcCCCCcEEEEEecC
Confidence 999999888532 2221110 01 1123346899999999999 776 5999999999999999998
Q ss_pred Cc
Q 018858 299 FQ 300 (349)
Q Consensus 299 ~~ 300 (349)
.+
T Consensus 336 ~~ 337 (345)
T 3fm0_A 336 PE 337 (345)
T ss_dssp --
T ss_pred CC
Confidence 64
No 53
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=269.41 Aligned_cols=275 Identities=16% Similarity=0.200 Sum_probs=219.7
Q ss_pred cCCCCeeeeCCceeeeEEEEec-CCCceEEEeCCCCcEEEEECCCCcEEEEee-------------cCCCCeEEEEEec-
Q 018858 4 AEAKPRRLRGHKATATCCIASR-DRPGFVASSGEDGCICWFDLRSKDVQLVTD-------------VGNGPVTSLCFKS- 68 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~-~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~~- 68 (349)
..+..+.+++|.+.|++++|+| + +++|++|+.||.|++||+.+++....+. +|...|.+++|+|
T Consensus 32 ~~~~~~~~~~h~~~v~~~~~s~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 32 LNKDRDVERIHGGGINTLDIEPVE-GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp ECTTEEECCCCSSCEEEEEECTTT-CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred cCcceeeeeccCCcEEEEEEecCC-CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence 3456778889999999999999 7 8999999999999999999876533332 4899999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC---CEEEEEcCCCcEEEEEcCCceEeceecccc
Q 018858 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS---SFLACADDGGDVKIIDIRQHCLYKSLRAGH 145 (349)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 145 (349)
++++|++++.||.|++||+++++....+. +...+.++.++|.+ .++++++.++.|++||+++++.+..+. .|
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~ 185 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-GH 185 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-CC
T ss_pred CCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-CC
Confidence 78899999999999999999764333322 45778999998854 599999999999999999999888888 89
Q ss_pred ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccCceeee-ecCCC
Q 018858 146 SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNIS-RSKST 223 (349)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~ 223 (349)
...|.+++|+| ++. +|++++.||.|++||++...... .....
T Consensus 186 ~~~v~~~~~~~------------------------------------~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~ 229 (408)
T 4a11_B 186 RQEILAVSWSP------------------------------------RYDYILATASADSRVKLWDVRRASGCLITLDQH 229 (408)
T ss_dssp CSCEEEEEECS------------------------------------SCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred CCcEEEEEECC------------------------------------CCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence 99999999999 566 68999999999999998753211 11100
Q ss_pred CCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
.. ............|...|.+++|+ |++++|++++.|+.|++||+.+++...
T Consensus 230 ~~-------------------------~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 230 NG-------------------------KKSQAVESANTAHNGKVNGLCFT---SDGLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp TT-------------------------CSCCCTTTSSCSCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred cc-------------------------ccceeeccccccccCceeEEEEc---CCCCEEEEecCCCeEEEEECCCCccce
Confidence 00 00012223446788999999999 899999999999999999998765321
Q ss_pred cc--------------------------------------cccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEE
Q 018858 304 TS--------------------------------------INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 345 (349)
Q Consensus 304 ~~--------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 345 (349)
.. .....+..+.+|...|++++|+| ++++|++++.||.|++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~i 360 (408)
T 4a11_B 282 VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILA 360 (408)
T ss_dssp CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEE
T ss_pred eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEE
Confidence 10 12245566678999999999988 8889999999999999
Q ss_pred eeCC
Q 018858 346 YSIS 349 (349)
Q Consensus 346 w~~~ 349 (349)
|+++
T Consensus 361 w~~~ 364 (408)
T 4a11_B 361 WVPS 364 (408)
T ss_dssp EEEC
T ss_pred EeCC
Confidence 9974
No 54
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-38 Score=259.36 Aligned_cols=251 Identities=14% Similarity=0.123 Sum_probs=192.8
Q ss_pred CCeee-eC-CceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-------CcEEEEeecCCCCeEEEEEecCCCEEEEEe
Q 018858 7 KPRRL-RG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRS-------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 7 ~~~~l-~~-h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 77 (349)
....+ .+ |.+.|.+++|+|+ +++|++|+.|++|++||++. .+.+..+.+|...|.+++|+|++++|++++
T Consensus 48 ~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s 126 (330)
T 2hes_X 48 LIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS 126 (330)
T ss_dssp EEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE
T ss_pred EEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 34445 34 9999999999998 89999999999999999853 345678889999999999999999999999
Q ss_pred CCCeEEEEEccC-CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc--eEeceeccccccceeEEEE
Q 018858 78 SGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH--CLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 78 ~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~ 154 (349)
.|+.|++||++. +.....+..+..|...|.+++|+|++.+|++++.|+.|++||+.++ +++..+. +|...|.+++|
T Consensus 127 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~ 205 (330)
T 2hes_X 127 RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDF 205 (330)
T ss_dssp TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEE
T ss_pred CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEe
Confidence 999999999953 3334556677889999999999999999999999999999998865 6778888 89999999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc--------eeeeecCCCCCC
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE--------LNISRSKSTTKP 226 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~ 226 (349)
+|++ .+..|++|+.|++|++||++.. ............
T Consensus 206 ~~~~----------------------------------~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 206 DKTE----------------------------------GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp CCSS----------------------------------SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred cCCC----------------------------------CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 9920 2678999999999999999764 233333344567
Q ss_pred ccceeeeeccccEEEEeeeeeecCce------eeeee-eeecCCCc-ceEEEEEeeecC--CccEEEEeeCCCeEEEEec
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQSGGK------RLHLD-YSVGGHTA-AASCVAFSMFGE--RGKYLISGGNDKLVKVWDC 296 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~h~~-~i~~i~~~~~~~--~~~~l~s~~~d~~i~vwd~ 296 (349)
.+..++|++++ .+++ +..|+.+.. ..... ....+|.. .|++++|+ | ++++|++|+.||.|++||+
T Consensus 252 ~v~~v~~s~~~-~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~---~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 252 QVYNVAWGFNG-LIAS-VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL---ELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp CEEEEEECTTS-CEEE-EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC--------CCEEEEETTSEEEEEEC
T ss_pred ceEEEEEcCCC-EEEE-EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEe---cCCCceEEEEecCCCcEEEEEe
Confidence 88999999776 4443 333332211 11222 23456876 89999999 6 6889999999999999998
Q ss_pred CC
Q 018858 297 SR 298 (349)
Q Consensus 297 ~~ 298 (349)
+.
T Consensus 327 ~~ 328 (330)
T 2hes_X 327 EK 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 75
No 55
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.6e-38 Score=260.93 Aligned_cols=280 Identities=13% Similarity=0.119 Sum_probs=229.4
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
|.++|.+++|+|+ +++++++..++.+..|.............|...|.+++|+|++++|++++ ||.|++||+.+++..
T Consensus 8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred cCCceeEEEECCC-CCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 5678999999999 89999888888887776665544445557999999999999999999999 999999999876554
Q ss_pred cceeecc--CcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce--EeceeccccccceeEEEEccCCCCCCCCCCCCC
Q 018858 94 RPLESYN--YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 94 ~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
..+..+. .|...+.+++|+|++++|++++.|+.|++||+++++ ....+. .|...+.+++|+|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~------------- 151 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISP------------- 151 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECT-------------
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECC-------------
Confidence 4444433 577899999999999999999999999999999876 556666 7888999999999
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 249 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
++++|++++.||.|++||+++++....... ....+..++|+|+++.+++.+ .++.
T Consensus 152 -----------------------~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~ 206 (337)
T 1gxr_A 152 -----------------------DSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWTGG-LDNT 206 (337)
T ss_dssp -----------------------TSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE-TTSE
T ss_pred -----------------------CCCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCCCEEEEEe-cCCc
Confidence 789999999999999999998876665543 456789999999999998633 2221
Q ss_pred ----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEE
Q 018858 250 ----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 325 (349)
Q Consensus 250 ----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 325 (349)
..........+ .|...+.+++|+ |+++++++++.|+.|++||+.+. . ......|...|.+++
T Consensus 207 i~~~d~~~~~~~~~~-~~~~~v~~~~~s---~~~~~l~~~~~~~~i~~~~~~~~---------~-~~~~~~~~~~v~~~~ 272 (337)
T 1gxr_A 207 VRSWDLREGRQLQQH-DFTSQIFSLGYC---PTGEWLAVGMESSNVEVLHVNKP---------D-KYQLHLHESCVLSLK 272 (337)
T ss_dssp EEEEETTTTEEEEEE-ECSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTSS---------C-EEEECCCSSCEEEEE
T ss_pred EEEEECCCCceEeee-cCCCceEEEEEC---CCCCEEEEEcCCCcEEEEECCCC---------C-eEEEcCCccceeEEE
Confidence 11122333333 367789999999 89999999999999999999986 2 335678999999999
Q ss_pred eecCCCCcEEEeeCCCeEEEeeCC
Q 018858 326 TTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 326 ~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|+| ++++|++++.||.|++|+++
T Consensus 273 ~~~-~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 273 FAY-CGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETT
T ss_pred ECC-CCCEEEEecCCCcEEEEECC
Confidence 988 88899999999999999974
No 56
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.8e-38 Score=264.56 Aligned_cols=273 Identities=13% Similarity=0.121 Sum_probs=225.0
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---EEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVK 83 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 83 (349)
.....+|.+.|++++|+|+ +++|++++.||.|++||+.+++ ....+..|...|.+++|+|+++ +|++++.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred eecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 3445689999999999998 8999999999999999998877 3455568999999999999999 999999999999
Q ss_pred EEEc-cCCCcccceeeccC--cccceEEEEEccCCCEEEEEcCCCcEEEEEcCC---------ceEeceeccccccceeE
Q 018858 84 SFDV-HMPASWRPLESYNY--NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---------HCLYKSLRAGHSSICSS 151 (349)
Q Consensus 84 iwd~-~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~v~~ 151 (349)
+||+ .+++ ...+.. |...|.+++|+| +++|++++.|+.|++||+++ ++++..+. +...+.+
T Consensus 83 ~wd~~~~~~----~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 155 (342)
T 1yfq_A 83 KVDLIGSPS----FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFT 155 (342)
T ss_dssp EECSSSSSS----EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEE
T ss_pred EEEeccCCc----eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEE
Confidence 9999 7653 245566 889999999999 99999999999999999987 77666666 7788999
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-cee-eeecCCCCCCccc
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELN-ISRSKSTTKPLKG 229 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~~~ 229 (349)
++|+| ++ +++++.|+.|++||+++ ... ...........+.
T Consensus 156 ~~~~~------------------------------------~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~ 197 (342)
T 1yfq_A 156 MDTNS------------------------------------SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR 197 (342)
T ss_dssp EEECS------------------------------------SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE
T ss_pred EEecC------------------------------------Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCcee
Confidence 99988 44 89999999999999997 443 2233334566789
Q ss_pred eeeeec-cccEEEEeeeeeecCc----ee------eeeeeeecCCCc---------ceEEEEEeeecCCccEEEEeeCCC
Q 018858 230 SQSTSK-VNIRDAEMEILDQSGG----KR------LHLDYSVGGHTA---------AASCVAFSMFGERGKYLISGGNDK 289 (349)
Q Consensus 230 ~~~~~~-~~~~~~~~~~~~~~~~----~~------~~~~~~~~~h~~---------~i~~i~~~~~~~~~~~l~s~~~d~ 289 (349)
+++|+| +++++++.+ .++.+. .. ......+..|.. .|.+++|+ |++++|++++.||
T Consensus 198 ~i~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg 273 (342)
T 1yfq_A 198 DVALLPKEQEGYACSS-IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS---PRHKFLYTAGSDG 273 (342)
T ss_dssp EEEECSGGGCEEEEEE-TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC---TTTCCEEEEETTS
T ss_pred EEEECCCCCCEEEEEe-cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc---CCCCEEEEecCCc
Confidence 999999 999988633 222111 11 134445666644 99999999 8999999999999
Q ss_pred eEEEEecCCCcceecccccceeeecccc-ccceEEEEeecCCCCcEEEeeCCCe
Q 018858 290 LVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKV 342 (349)
Q Consensus 290 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~ 342 (349)
.|++||+.++ ..+..+.+| ...|.+++ | ++++|++++.||.
T Consensus 274 ~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~--~-~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 274 IISCWNLQTR---------KKIKNFAKFNEDSVVKIA--C-SDNILCLATSDDT 315 (342)
T ss_dssp CEEEEETTTT---------EEEEECCCCSSSEEEEEE--E-CSSEEEEEEECTH
T ss_pred eEEEEcCccH---------hHhhhhhcccCCCceEec--C-CCCeEEEEecCCc
Confidence 9999999987 666777888 99999998 5 8889999999998
No 57
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.2e-38 Score=273.66 Aligned_cols=261 Identities=14% Similarity=0.189 Sum_probs=217.7
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC----------CcEEEEeecCCCCeEEEEEecCCC-EEEEEe
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS----------KDVQLVTDVGNGPVTSLCFKSGNE-DIIYVS 77 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 77 (349)
..+..|.+.|++++|+|+++.+|++++.||.|++||+.+ .+.+..+.+|...|.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997578999999999999999976 566788889999999999999988 999999
Q ss_pred CCCeEEEEEccCCCcc----cceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCc---eEeceeccccccce
Q 018858 78 SGKEVKSFDVHMPASW----RPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSIC 149 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v 149 (349)
.||.|++|++..+... .....+..|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+. .|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCe
Confidence 9999999999874321 22445667888999999999 6789999999999999999976 5666777 789999
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccCceeeeecCCCCCCcc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLK 228 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 228 (349)
.+++|+| ++. +|++|+.||.|++||++...
T Consensus 281 ~~i~~~p------------------------------------~~~~~l~tg~~dg~v~vwd~~~~~------------- 311 (430)
T 2xyi_A 281 NCLSFNP------------------------------------YSEFILATGSADKTVALWDLRNLK------------- 311 (430)
T ss_dssp EEEEECS------------------------------------SCTTEEEEEETTSEEEEEETTCTT-------------
T ss_pred EEEEeCC------------------------------------CCCCEEEEEeCCCeEEEEeCCCCC-------------
Confidence 9999999 554 78999999999999998631
Q ss_pred ceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCCcceec---
Q 018858 229 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQT--- 304 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~--- 304 (349)
..+..+..|...|.++.|+ |+++ +|++++.|+.|+|||+........
T Consensus 312 --------------------------~~~~~~~~h~~~v~~i~~s---p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 362 (430)
T 2xyi_A 312 --------------------------LKLHSFESHKDEIFQVQWS---PHNETILASSGTDRRLHVWDLSKIGEEQSTED 362 (430)
T ss_dssp --------------------------SCSEEEECCSSCEEEEEEC---SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH
T ss_pred --------------------------CCeEEeecCCCCEEEEEEC---CCCCCEEEEEeCCCcEEEEeCCCCccccCccc
Confidence 3456677899999999999 7774 799999999999999987432111
Q ss_pred --ccccceeeeccccccceEEEEeecCCCC-cEEEeeCCCeEEEeeCC
Q 018858 305 --SINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 305 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iw~~~ 349 (349)
.....++....+|...|++++|+| ++. +|++++.||.|++|+++
T Consensus 363 ~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 363 AEDGPPELLFIHGGHTAKISDFSWNP-NEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp HHHCCTTEEEECCCCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEEC
T ss_pred cccCCcceEEEcCCCCCCceEEEECC-CCCCEEEEEECCCCEEEeEcc
Confidence 111256677788999999999998 555 89999999999999974
No 58
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-39 Score=292.91 Aligned_cols=272 Identities=16% Similarity=0.191 Sum_probs=216.8
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC--CCcEEEEeecCCCCeEEEEEecC--CCEEEEEeCCCeEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGKEVK 83 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~ 83 (349)
+..+.+|.+.|++++|+|+ +++|++|+.||.|++||+. +++.+..+.+|..+|.+++|+|+ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4678999999999999998 8999999999999999998 45667888999999999999988 99999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCce--EeceeccccccceeEEEEccCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
+||+.+++ ...+..+..|...|++++|+|+ ++++++|+.||.|++||++++. ....+. .|...|.+++|+|...
T Consensus 81 vwd~~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 81 IWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATI 158 (753)
T ss_dssp EEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCCC-
T ss_pred EEECCCCc-ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCccc
Confidence 99998753 2355566778899999999999 9999999999999999998763 333455 7889999999998210
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
-. ...... .+++.++++|+.||.|++||++++
T Consensus 159 ~~-----------------~~~~~~------~~d~~~l~sgs~dg~I~iwd~~~~------------------------- 190 (753)
T 3jro_A 159 EE-----------------DGEHNG------TKESRKFVTGGADNLVKIWKYNSD------------------------- 190 (753)
T ss_dssp -------------------------------CGGGCCEEEEETTSCEEEEEEETT-------------------------
T ss_pred cc-----------------cccccc------CCCCCEEEEEECCCeEEEEeccCC-------------------------
Confidence 00 000000 114789999999999999999864
Q ss_pred EEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCC---ccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~---~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
.........+.+|...|++++|+ |+ +++|++++.||.|++||+.++..... ........
T Consensus 191 -----------~~~~~~~~~~~~h~~~V~~l~~s---p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~----~~~~~~~~ 252 (753)
T 3jro_A 191 -----------AQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIWTQDNEQGPWK----KTLLKEEK 252 (753)
T ss_dssp -----------TTEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEESSSCEEEEEESSSSSCCB----CCBSSSSC
T ss_pred -----------cccceeeeeecCCCCcEEEEEec---cCCCCCCEEEEEecCCEEEEecCCCCCCcce----eEEeccCC
Confidence 11224556778899999999999 78 89999999999999999998632110 23334456
Q ss_pred cccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 317 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|...|++++|+| ++++|++++.||.|++|+++
T Consensus 253 ~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 253 FPDVLWRASWSL-SGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp CSSCCCCEEECT-TTCCEEEECSSSCEECCBCC
T ss_pred CCCceEEEEEcC-CCCEEEEEcCCCEEEEEecC
Confidence 889999999988 88899999999999999974
No 59
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.9e-38 Score=263.29 Aligned_cols=248 Identities=15% Similarity=0.154 Sum_probs=200.0
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
...+.+.+|...|.+++|+|+ +.++++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 67 ~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~w 145 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145 (343)
T ss_dssp EEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred cccchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEE
Confidence 345778999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCC----------CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKS----------SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
|+... ..........|...+.+++|+|++ .+|++++.|+.|++|| ...+....+. .|...|.+++|+
T Consensus 146 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~-~h~~~v~~~~~s 222 (343)
T 2xzm_R 146 NILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFK-AHESNVNHLSIS 222 (343)
T ss_dssp ESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEE-CCSSCEEEEEEC
T ss_pred eccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEc-CccccceEEEEC
Confidence 99732 222223334677889999999986 6899999999999999 4556667777 899999999999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee-eeecCCCCCCccceeeee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN-ISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~ 234 (349)
| ++++|++|+.||.|++||++.... ..... ....+..++|+
T Consensus 223 ~------------------------------------~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~s 264 (343)
T 2xzm_R 223 P------------------------------------NGKYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFN 264 (343)
T ss_dssp T------------------------------------TSSEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEEC
T ss_pred C------------------------------------CCCEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEEC
Confidence 9 899999999999999999954322 22221 23458899999
Q ss_pred ccccEEEEeee-----eeecCceeeeeeeee-----------cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 235 KVNIRDAEMEI-----LDQSGGKRLHLDYSV-----------GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 235 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----------~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
|++.++++... ++...... .....+ .+|...|.+++|+ |++++|++|+.||.|++|++++
T Consensus 265 p~~~~la~~~d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 265 PKLQWVAVGTDQGVKIFNLMTQSK-APVCTIEAEPITKAEGQKGKNPQCTSLAWN---ALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SSSCEEEEEESSCEEEEESSSCCS-CSEEECCCCSGGGBTTBCCSCCCEEEEEEC---SSSCCEEEEETTSEEEEEEEEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCC-CceEEeecCcchhhhhhcCCCCceEEEEEC---CCCCeEEEecCCceEEEEEEEc
Confidence 99998874221 11110000 000112 2688889999999 8999999999999999999876
Q ss_pred C
Q 018858 299 F 299 (349)
Q Consensus 299 ~ 299 (349)
+
T Consensus 341 g 341 (343)
T 2xzm_R 341 S 341 (343)
T ss_dssp E
T ss_pred c
Confidence 4
No 60
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.1e-37 Score=276.92 Aligned_cols=324 Identities=13% Similarity=0.110 Sum_probs=247.1
Q ss_pred cCCCCeeeeCCce---eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEe-e---cCCCCeEEEEEecCCCEEEEE
Q 018858 4 AEAKPRRLRGHKA---TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-D---VGNGPVTSLCFKSGNEDIIYV 76 (349)
Q Consensus 4 ~~~~~~~l~~h~~---~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~ 76 (349)
+++.++.+.+|.. .|++++|+|+++++|++++.||.|++||+.+++.+..+ . .|...|.+++|+ ++++|+++
T Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 270 (615)
T 1pgu_A 192 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV 270 (615)
T ss_dssp TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE
T ss_pred CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE
Confidence 4566788899999 99999999975789999999999999999999999888 6 899999999999 99999999
Q ss_pred eCCCeEEEEEccCCCcccceeec-cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 77 SSGKEVKSFDVHMPASWRPLESY-NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
+.|+.|++||+++++....+... ..+...+.++.|. +++++++++.+|.|++||+++++.+..+. +|...|.+++|
T Consensus 271 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~- 347 (615)
T 1pgu_A 271 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS-GHNKGITALTV- 347 (615)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC-CCSSCEEEEET-
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEe-CCCCCEEEEEe-
Confidence 99999999999976543333322 1123567788885 88999999999999999999998888888 88888888888
Q ss_pred cCCCCCCCCCCC----CCC-ccccCCc----------------------------------eeEEeecCc----------
Q 018858 156 PWKPWEGLPENN----GNA-GQCYNPA----------------------------------FVHAIAIPD---------- 186 (349)
Q Consensus 156 ~~~~~~~~~~~~----~~~-~~~~~~~----------------------------------~~~~~~~~~---------- 186 (349)
|+ ...+..++. ... ....... ....++++|
T Consensus 348 ~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 426 (615)
T 1pgu_A 348 NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 426 (615)
T ss_dssp TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCC
Confidence 65 111111111 000 0000000 011111111
Q ss_pred -------------------------ccccCCCCcEEEEEcC-CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 187 -------------------------ADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 187 -------------------------~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
+.+ .+++|++++. ||.|++||+.+++............+..++|+|+++++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 503 (615)
T 1pgu_A 427 DDLLILQSFTGDIIKSVRLNSPGSAVSL---SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 503 (615)
T ss_dssp SEEEEEETTTCCEEEEEECSSCEEEEEE---CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred CceEEEeccCCceeeecccCCCceEEEE---cCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEE
Confidence 000 1678899998 99999999998765433334456789999999999999
Q ss_pred EEeeeeeec----CceeeeeeeeecC-CCcceEEEEEeeecC----------CccEEEEeeCCCeEEEEecCCCcceecc
Q 018858 241 AEMEILDQS----GGKRLHLDYSVGG-HTAAASCVAFSMFGE----------RGKYLISGGNDKLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 241 ~~~~~~~~~----~~~~~~~~~~~~~-h~~~i~~i~~~~~~~----------~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 305 (349)
++.+ .++. .....+.+..+.+ |...|++++|+ | ++++|++++.|+.|++||+.++.
T Consensus 504 ~~~~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~s---p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----- 574 (615)
T 1pgu_A 504 AAGD-VMGKILLYDLQSREVKTSRWAFRTSKINAISWK---PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM----- 574 (615)
T ss_dssp EEEE-TTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC---CCC------CCSCCEEEEEETTSCEEEEESSCTT-----
T ss_pred EEcC-CCCeEEEeeCCCCcceeEeecCCCCceeEEEEc---CccccccccccCCCEEEEEcCCCcEEEEECCCCc-----
Confidence 9632 2222 2223455666777 99999999999 8 99999999999999999999863
Q ss_pred cccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 306 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+..+.+|...|++++|+| +++ |++++.||.|++|+++
T Consensus 575 ---~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 575 ---KIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp ---CCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred ---eechhhhcCccceEEEEEcC-CCC-eEEecCCceEEEEeee
Confidence 35667788999999999998 777 9999999999999974
No 61
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.3e-38 Score=264.73 Aligned_cols=286 Identities=15% Similarity=0.160 Sum_probs=224.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCC--CceEEEeCCCCcEEEEECCC-CcEE-EEeecCCCCeEEEEEecCCCEEEEEeCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDR--PGFVASSGEDGCICWFDLRS-KDVQ-LVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~--~~~l~t~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d 79 (349)
..+.++.+++|.+.|++++|+|++ +++|++|+.||.|++||+.+ ++.+ ..+.+|...|.+++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 345677889999999999999984 58999999999999999987 5554 7888999999999999999999999999
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEE--ccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVC--NPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
|.|++||+++++.. ....|...|.+++| +|++++|++++.||.|++||+++++.+..+. .+ ..+.++.+.+
T Consensus 108 g~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~-~~~~~~~~~~- 180 (368)
T 3mmy_A 108 KTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-LP-ERCYCADVIY- 180 (368)
T ss_dssp SEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE-CS-SCEEEEEEET-
T ss_pred CcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe-cC-CCceEEEecC-
Confidence 99999999976432 23447789999999 8899999999999999999999998888887 43 4566666654
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee-ecCCCCCCccceeeeecc
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~ 236 (349)
..+++++.++.+++|+++...... ............+++.++
T Consensus 181 -------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 181 -------------------------------------PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD 223 (368)
T ss_dssp -------------------------------------TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred -------------------------------------CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc
Confidence 478888899999999998764433 333333444555555544
Q ss_pred ccE----EEEeeeeeecC-------ceeeeeeeeecCCCc------------ceEEEEEeeecCCccEEEEeeCCCeEEE
Q 018858 237 NIR----DAEMEILDQSG-------GKRLHLDYSVGGHTA------------AASCVAFSMFGERGKYLISGGNDKLVKV 293 (349)
Q Consensus 237 ~~~----~~~~~~~~~~~-------~~~~~~~~~~~~h~~------------~i~~i~~~~~~~~~~~l~s~~~d~~i~v 293 (349)
... +++ +..++.+ .........+.+|.. .|++++|+ |++++|++++.||.|++
T Consensus 224 ~~~~~~~~~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~s~~~dg~i~i 299 (368)
T 3mmy_A 224 KQNKPTGFAL-GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH---PVHGTLATVGSDGRFSF 299 (368)
T ss_dssp TTSCEEEEEE-EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC---TTTCCEEEEETTSCEEE
T ss_pred CCCCCCeEEE-ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe---cCCCEEEEEccCCeEEE
Confidence 432 442 2222221 111133445556654 79999999 89999999999999999
Q ss_pred EecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 294 WDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
||+.++ ..+..+..|...|.+++|+| ++++|++++.|+..+.|+
T Consensus 300 wd~~~~---------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 300 WDKDAR---------TKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EETTTT---------EEEEECCCCSSCEEEEEECT-TSSCEEEEECCCSTTCGG
T ss_pred EECCCC---------cEEEEecCCCCCceEEEECC-CCCeEEEEeccccccccc
Confidence 999987 66778889999999999988 889999999887554443
No 62
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.6e-37 Score=263.08 Aligned_cols=250 Identities=13% Similarity=0.206 Sum_probs=211.4
Q ss_pred cCCCCeee--eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 4 AEAKPRRL--RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l--~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
+++..+.+ .+|...|+|++|+|+ +++|++|+.||.|++||+++++.+..+.+|...+.+++++ +..+++|+.|+.
T Consensus 134 tg~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~ 210 (420)
T 4gga_A 134 SGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGH 210 (420)
T ss_dssp TCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred CCCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCc
Confidence 45555555 467889999999998 8999999999999999999999999999999999988775 679999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE----eceeccccccceeEEEEccC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL----YKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~ 157 (349)
+++||..... ..+..+.+|...+..+.++|+++++++++.|+.+++|+..+++. +.... .|...|.+++|+|.
T Consensus 211 i~~~d~~~~~--~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~ 287 (420)
T 4gga_A 211 IHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPW 287 (420)
T ss_dssp EEEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTT
T ss_pred eeEeeecccc--eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeec-ccCCceeeeeeCCC
Confidence 9999988643 44556777889999999999999999999999999999986642 34455 68889999999995
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE--EcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV--AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
....+++ |+.|+.|++||++++
T Consensus 288 -----------------------------------~~~~la~~~gs~D~~I~iwd~~t~--------------------- 311 (420)
T 4gga_A 288 -----------------------------------QSNVLATGGGTSDRHIRIWNVCSG--------------------- 311 (420)
T ss_dssp -----------------------------------CTTEEEEEECTTTCEEEEEETTTT---------------------
T ss_pred -----------------------------------cccEEEEEeecCCCEEEEEeCCcc---------------------
Confidence 4566665 458999999999975
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee--CCCeEEEEecCCCcceecccccceeee
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
.....+..| ..+.++.|+ ++++.+++++ .|+.|+|||+.++ ..+..
T Consensus 312 -------------------~~~~~~~~~-~~v~~~~~~---~~~~~lv~~sg~~d~~I~iwd~~~~---------~~v~~ 359 (420)
T 4gga_A 312 -------------------ACLSAVDAH-SQVCSILWS---PHYKELISGHGFAQNQLVIWKYPTM---------AKVAE 359 (420)
T ss_dssp -------------------EEEEEEECS-SCEEEEEEE---TTTTEEEEEECTTTCCEEEEETTTC---------CEEEE
T ss_pred -------------------ccceeeccc-cceeeeeec---CCCCeEEEEEecCCCEEEEEECCCC---------cEEEE
Confidence 333444433 468889999 8888887764 7999999999998 67778
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.+|.+.|++++|+| ++++|++|+.|++|+|||+
T Consensus 360 l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 360 LKGHTSRVLSLTMSP-DGATVASAAADETLRLWRC 393 (420)
T ss_dssp ECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred EcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence 889999999999988 8899999999999999997
No 63
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.3e-38 Score=303.44 Aligned_cols=324 Identities=15% Similarity=0.110 Sum_probs=260.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecC-CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+++.++.+.+|...|.+++|+|+ ++.++++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 56788899999999999999995 25689999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCccccee----------------------------------------------------eccCcccceEEEE
Q 018858 83 KSFDVHMPASWRPLE----------------------------------------------------SYNYNKEEINQIV 110 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~----------------------------------------------------~~~~~~~~v~~~~ 110 (349)
++||+.+++....+. ....|...+.+++
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 999997653221111 0125667899999
Q ss_pred EccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC--CCCC---------------------
Q 018858 111 CNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL--PENN--------------------- 167 (349)
Q Consensus 111 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~--------------------- 167 (349)
|+|+++++++++.+|.|++||+.++..+..+. +|...|.+++|+|++.++.+ .++.
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence 99999999999999999999999999999999 99999999999998755411 1111
Q ss_pred -------------------------------------------CC--------------------Cccc-----cCCcee
Q 018858 168 -------------------------------------------GN--------------------AGQC-----YNPAFV 179 (349)
Q Consensus 168 -------------------------------------------~~--------------------~~~~-----~~~~~~ 179 (349)
.+ .+.. .+...+
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 00 0000 122345
Q ss_pred EEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee--eeecCceeeeee
Q 018858 180 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI--LDQSGGKRLHLD 257 (349)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 257 (349)
.+++++| ++++|++++.||.|++||+.++...... .....+..+++++++..++.... ...+........
T Consensus 1007 ~~l~~s~------dg~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A 1007 RHIQFTA------DGKTLISSSEDSVIQVWNWQTGDYVFLQ--AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp CCEEECS------SSSCEEEECSSSBEEEEETTTTEEECCB--CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC
T ss_pred EEEEECC------CCCEEEEEcCCCEEEEEECCCCceEEEe--cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee
Confidence 5666666 8899999999999999999987665433 44577889999998876653211 111112233456
Q ss_pred eeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEe
Q 018858 258 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 258 ~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
..+.+|...|.+++|+ |+++++++++.|+.|++||+.++ ..+..+.+|...|++++|+| ++++|+++
T Consensus 1079 ~~~~~~~~~v~~~~~s---~d~~~l~s~s~d~~v~iwd~~~~---------~~~~~l~~h~~~v~~~~~s~-dg~~lat~ 1145 (1249)
T 3sfz_A 1079 RDFTCHQGTVLSCAIS---SDATKFSSTSADKTAKIWSFDLL---------SPLHELKGHNGCVRCSAFSL-DGILLATG 1145 (1249)
T ss_dssp EEEECCSSCCCCEEEC---SSSSSCEEECCSSCCCEECSSSS---------SCSBCCCCCSSCEEEEEECS-SSSEEEEE
T ss_pred EEEcccCCcEEEEEEC---CCCCEEEEEcCCCcEEEEECCCc---------ceeeeeccCCCcEEEEEECC-CCCEEEEE
Confidence 6778899999999999 89999999999999999999987 56667788999999999988 88999999
Q ss_pred eCCCeEEEeeCC
Q 018858 338 DTSKVVKVYSIS 349 (349)
Q Consensus 338 ~~dg~i~iw~~~ 349 (349)
+.||.|++||++
T Consensus 1146 ~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A 1146 DDNGEIRIWNVS 1157 (1249)
T ss_dssp ETTSCCCEEESS
T ss_pred eCCCEEEEEECC
Confidence 999999999974
No 64
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=288.38 Aligned_cols=319 Identities=11% Similarity=0.026 Sum_probs=228.9
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
..+|.+.|++++|+|+ +++||+|+.||.|++|+....+....+. |..+|.+++|+| +++|++++.|+.|++||++++
T Consensus 13 ~~gh~~~V~~lafspd-g~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFT-QNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEECSSCEEEEEEETT-TTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred ccCCCCCcEEEEECCC-CCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 3489999999999998 8999999999999999998777665544 788999999999 889999999999999999986
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe-----------ceeccccccceeEEEEccCC-
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-----------KSLRAGHSSICSSVQFIPWK- 158 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~- 158 (349)
+....+ . +...|++++|+|++++|++|+.||.|++||+++++.. ..+. +|...|.+++|+|++
T Consensus 90 ~~~~~~---~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~-~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 90 KVLTTV---F-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA-ARLSPIVSIQWNPRDI 164 (902)
T ss_dssp SEEEEE---E-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS-SCCCCCCEEEEETTEE
T ss_pred cEEEEE---c-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc-cCCCCeEEEEEccCCC
Confidence 544333 2 4578999999999999999999999999999988753 2345 788999999999963
Q ss_pred CCC--CCCCCC----CCCcc-----------------------ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEE
Q 018858 159 PWE--GLPENN----GNAGQ-----------------------CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 209 (349)
Q Consensus 159 ~~~--~~~~~~----~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 209 (349)
..+ +..+.. ...+. ..+...+.+++|+| ++++|++++.||.|++|
T Consensus 165 ~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp------dg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 165 GTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP------NSLHIITIHEDNSLVFW 238 (902)
T ss_dssp EEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT------TSSEEEEEETTCCEEEE
T ss_pred CEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC------CCCEEEEEECCCeEEEE
Confidence 111 111111 00000 01125689999999 89999999999999999
Q ss_pred EccCceeeee--cC----C-----------CCCCccceeeee----ccccEEEEeeeeeec---------C---------
Q 018858 210 NIESELNISR--SK----S-----------TTKPLKGSQSTS----KVNIRDAEMEILDQS---------G--------- 250 (349)
Q Consensus 210 d~~~~~~~~~--~~----~-----------~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------~--------- 250 (349)
|+++++.+.. .. . .....+..++|+ |++..+++++..+.. .
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~ 318 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSI 318 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGG
T ss_pred ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccc
Confidence 9998766542 11 1 013367888895 444444433322100 0
Q ss_pred ---------------c---------------------------------------eeee--------eee-------eec
Q 018858 251 ---------------G---------------------------------------KRLH--------LDY-------SVG 261 (349)
Q Consensus 251 ---------------~---------------------------------------~~~~--------~~~-------~~~ 261 (349)
. .... ... .+.
T Consensus 319 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 319 TSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp CCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred cchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 0 0000 000 011
Q ss_pred CCCcceEEEEEee-------------------------------ecCCccEEEEeeCCCeEEEEecCCCcceecccccce
Q 018858 262 GHTAAASCVAFSM-------------------------------FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 262 ~h~~~i~~i~~~~-------------------------------~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
.|...|+++++++ ++|++++|++|+.|++|++||+.++.... ...
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~----~~~ 474 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD----NAS 474 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT----TBC
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC----Cce
Confidence 2234455555521 12789999999999999999998873210 011
Q ss_pred ee-ec-----cccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 311 LI-KN-----INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 311 ~~-~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+. .. .+|...|++++|+| ++++|++|+.||+|+||++
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~ 517 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKY 517 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEE
T ss_pred EEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEe
Confidence 11 11 27889999999998 8999999999999999996
No 65
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.5e-37 Score=258.43 Aligned_cols=247 Identities=14% Similarity=0.137 Sum_probs=209.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC------cEEEEeecCCCCeEEEEEecCCCEEEEEe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK------DVQLVTDVGNGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 77 (349)
+++..+.+..|...|.+++|+|+ +.+|++|+.|+.+++|++... .....+..|...|.+++|+|++..|++++
T Consensus 95 ~~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s 173 (354)
T 2pbi_B 95 TTNKEHAVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173 (354)
T ss_dssp TCCEEEEEECSSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred CCCcceEEecCCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe
Confidence 34566778889999999999998 899999999999999998643 23566778999999999999999999999
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
.|++|++||+++++ .+..+.+|...|.+++|+| ++++|++|+.||.|++||+++++++..+. .|...|.+++|+
T Consensus 174 ~D~~v~lwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~ 249 (354)
T 2pbi_B 174 GDGTCALWDVESGQ---LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYY 249 (354)
T ss_dssp TTSEEEEEETTTCC---EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEEC
T ss_pred CCCcEEEEeCCCCe---EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEe
Confidence 99999999999764 4556667888999999987 46899999999999999999999999998 899999999999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-CCCccceeeee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTS 234 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~ 234 (349)
| ++++|++|+.|++|++||++........... ....+..++|+
T Consensus 250 p------------------------------------~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 250 P------------------------------------SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp T------------------------------------TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred C------------------------------------CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 9 7899999999999999999987665544332 23467789999
Q ss_pred ccccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 235 KVNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
|+++++++. ..+.. .......+..+.+|...|++++|+ |++++|++|+.|+.|++|+
T Consensus 294 ~~g~~l~~g-~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s---pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 294 LSGRLLFAG-YNDYTINVWDVLKGSRVSILFGHENRVSTLRVS---PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSEEEEE-ETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC---TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEE-ECCCcEEEEECCCCceEEEEECCCCcEEEEEEC---CCCCEEEEEcCCCCEEecC
Confidence 999999853 32222 122334566788999999999999 8999999999999999996
No 66
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.4e-38 Score=270.00 Aligned_cols=255 Identities=12% Similarity=0.161 Sum_probs=198.3
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-----------EEEEeecCC------------CCeEEEEEecCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----------VQLVTDVGN------------GPVTSLCFKSGN 70 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 70 (349)
|.+.|++++|+|+ +++|++|+.||.|++||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 5789999999998 8999999999999999998776 477888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEEccCCCccc------------------------------------ce-eeccCcccceEEEEE
Q 018858 71 --EDIIYVSSGKEVKSFDVHMPASWR------------------------------------PL-ESYNYNKEEINQIVC 111 (349)
Q Consensus 71 --~~l~~~~~dg~i~iwd~~~~~~~~------------------------------------~~-~~~~~~~~~v~~~~~ 111 (349)
.+|++++.|+.|++||+.++.... .. ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 789999999999999987532110 00 113568889999999
Q ss_pred ccCCCEEEEEcCCCcEEEEEcC-CceEec-------eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEee
Q 018858 112 NPKSSFLACADDGGDVKIIDIR-QHCLYK-------SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIA 183 (349)
Q Consensus 112 ~~~~~~l~~~~~dg~i~i~d~~-~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (349)
+|++++|++| .|+.|++||++ .++.+. .+. .|...|.+++|+|
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p--------------------------- 236 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANME-ELTEVITAAEFHP--------------------------- 236 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGG-GCCCCEEEEEECS---------------------------
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccc-ccCcceEEEEECC---------------------------
Confidence 9999999998 79999999999 444444 345 7888999999999
Q ss_pred cCcccccCCCC-cEEEEEcCCCeEEEEEccCcee----eeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeee
Q 018858 184 IPDADMLDKTN-KICVVAKGDGVVDVINIESELN----ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 258 (349)
Q Consensus 184 ~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
++ ++|++|+.||.|++||++++.. ...+..+. ......
T Consensus 237 ---------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------------------~~~~~~ 279 (447)
T 3dw8_B 237 ---------NSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPE----------------------------DPSNRS 279 (447)
T ss_dssp ---------SCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC---------------------------------CC
T ss_pred ---------CCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCC----------------------------Cccccc
Confidence 66 8999999999999999997532 00000000 000111
Q ss_pred eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC-Ccceecccccceeeeccccccc---------------eE
Q 018858 259 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKK---------------VN 322 (349)
Q Consensus 259 ~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~---------------v~ 322 (349)
.+.+|...|.+++|+ |++++|++++. +.|++||++. + ..+..+..|... +.
T Consensus 280 ~~~~~~~~v~~~~~s---~~g~~l~~~~~-~~v~iwd~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 346 (447)
T 3dw8_B 280 FFSEIISSISDVKFS---HSGRYMMTRDY-LSVKVWDLNMEN---------RPVETYQVHEYLRSKLCSLYENDCIFDKF 346 (447)
T ss_dssp HHHHHTTCEEEEEEC---TTSSEEEEEES-SEEEEEETTCCS---------SCSCCEESCGGGTTTHHHHHHTSGGGCCC
T ss_pred cccccCceEEEEEEC---CCCCEEEEeeC-CeEEEEeCCCCc---------cccceeeccccccccccccccccccccce
Confidence 223344599999999 89999999998 9999999987 4 444455555432 33
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.++|+| ++++|++++.||.|++||+.
T Consensus 347 ~~~~s~-~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 347 ECCWNG-SDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp CEEECT-TSSEEEEECSTTEEEEEETT
T ss_pred EEEECC-CCCEEEEeccCCEEEEEEcC
Confidence 489988 88899999999999999974
No 67
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.7e-37 Score=264.92 Aligned_cols=248 Identities=16% Similarity=0.209 Sum_probs=213.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEe--cCCCEEEEEeCCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK--SGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~ 81 (349)
+++.++.+.+|.+.|++++|+|+ + +|++|+.||+|++||+++++.+..+.+|...|.+++|+ ++++++++++.|+.
T Consensus 151 ~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 151 NKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred CCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence 56678889999999999999987 4 99999999999999999999999999999999999998 57789999999999
Q ss_pred EEEEEccCCCccc--------------------ceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEecee
Q 018858 82 VKSFDVHMPASWR--------------------PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL 141 (349)
Q Consensus 82 i~iwd~~~~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 141 (349)
|++||++++.... .+..+.+|...+.++ +++++++++++.||.|++||+++++.+..+
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 306 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 306 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 9999998754322 134456677777766 577899999999999999999999999999
Q ss_pred ccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC
Q 018858 142 RAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
. +|...|.+++|+| +++++++|+.||.|++||++++
T Consensus 307 ~-~~~~~v~~~~~~~------------------------------------~~~~l~sg~~dg~i~vwd~~~~------- 342 (464)
T 3v7d_B 307 S-GHTDRIYSTIYDH------------------------------------ERKRCISASMDTTIRIWDLENG------- 342 (464)
T ss_dssp C-CCSSCEEEEEEET------------------------------------TTTEEEEEETTSCEEEEETTTT-------
T ss_pred c-CCCCCEEEEEEcC------------------------------------CCCEEEEEeCCCcEEEEECCCC-------
Confidence 8 8999999999999 7899999999999999999875
Q ss_pred CCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
+.+..+.+|...|.++.++ +++|++++.||.|++||+.+..
T Consensus 343 ---------------------------------~~~~~~~~h~~~v~~~~~~-----~~~l~s~s~dg~v~vwd~~~~~- 383 (464)
T 3v7d_B 343 ---------------------------------ELMYTLQGHTALVGLLRLS-----DKFLVSAAADGSIRGWDANDYS- 383 (464)
T ss_dssp ---------------------------------EEEEEECCCSSCEEEEEEC-----SSEEEEEETTSEEEEEETTTCC-
T ss_pred ---------------------------------cEEEEEeCCCCcEEEEEEc-----CCEEEEEeCCCcEEEEECCCCc-
Confidence 5667788899999999986 4799999999999999999863
Q ss_pred eecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 302 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.. ....+...+..+++++ ++++|++++ ||.|++||++
T Consensus 384 --------~~-~~~~~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 384 --------RK-FSYHHTNLSAITTFYV-SDNILVSGS-ENQFNIYNLR 420 (464)
T ss_dssp --------EE-EEEECTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETT
T ss_pred --------ee-eeecCCCCccEEEEEe-CCCEEEEec-CCeEEEEECC
Confidence 22 2223566777788877 787888887 9999999974
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-36 Score=264.23 Aligned_cols=265 Identities=16% Similarity=0.197 Sum_probs=204.6
Q ss_pred CCeeeeCCceee-eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 7 KPRRLRGHKATA-TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 7 ~~~~l~~h~~~i-~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
....+++|...| .|+.+ + +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ ++++|+.||.|++|
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~-~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--E-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--E-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--C-CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 456889999885 56555 3 5799999999999999999999999999999999999999987 89999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEc--cCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCN--PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|+++++ .+..+.+|...|.+++|+ ++++++++++.||.|++||++++....... .......+.+.|...-.
T Consensus 189 d~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-- 261 (464)
T 3v7d_B 189 DIKKGC---CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG--EEHDYPLVFHTPEENPY-- 261 (464)
T ss_dssp ETTTTE---EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC--------CCSSEEESCGGGCTT--
T ss_pred ECCCCc---EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccc--ccCCcceEeeccCCCeE--
Confidence 999763 455667788999999998 477899999999999999998765433221 00111111111100000
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
......-....+.++ .+ +++++++++.||.|++||++++
T Consensus 262 ----~~~~~~~~~~~v~~~--~~------~~~~l~~~~~d~~i~vwd~~~~----------------------------- 300 (464)
T 3v7d_B 262 ----FVGVLRGHMASVRTV--SG------HGNIVVSGSYDNTLIVWDVAQM----------------------------- 300 (464)
T ss_dssp ----EEEEECCCSSCEEEE--EE------ETTEEEEEETTSCEEEEETTTT-----------------------------
T ss_pred ----EEEEccCccceEEEE--cC------CCCEEEEEeCCCeEEEEECCCC-----------------------------
Confidence 000000001111111 22 6889999999999999999875
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
..+..+.+|...|.++.|+ |+++++++|+.|+.|++||++++ ..+..+.+|...|.+
T Consensus 301 -----------~~~~~~~~~~~~v~~~~~~---~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 301 -----------KCLYILSGHTDRIYSTIYD---HERKRCISASMDTTIRIWDLENG---------ELMYTLQGHTALVGL 357 (464)
T ss_dssp -----------EEEEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEE
T ss_pred -----------cEEEEecCCCCCEEEEEEc---CCCCEEEEEeCCCcEEEEECCCC---------cEEEEEeCCCCcEEE
Confidence 5566778899999999999 89999999999999999999987 677788899999999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++++ +++|++++.||.|++||++
T Consensus 358 ~~~~---~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 358 LRLS---DKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp EEEC---SSEEEEEETTSEEEEEETT
T ss_pred EEEc---CCEEEEEeCCCcEEEEECC
Confidence 9995 4599999999999999974
No 69
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-37 Score=285.75 Aligned_cols=332 Identities=8% Similarity=0.031 Sum_probs=232.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE-----------EEeecCCCCeEEEEEecC-CC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-----------LVTDVGNGPVTSLCFKSG-NE 71 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~ 71 (349)
+++.++.+. |.+.|++++|+|+ +++|++|+.||.|++||+++++.. ..+.+|..+|.+++|+|+ +.
T Consensus 88 ~~~~~~~~~-~~~~V~~v~~sp~-g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 88 SQKVLTTVF-VPGKITSIDTDAS-LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG 165 (902)
T ss_dssp TCSEEEEEE-CSSCEEEEECCTT-CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred CCcEEEEEc-CCCCEEEEEECCC-CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence 345666776 6789999999998 899999999999999999988753 223568899999999996 57
Q ss_pred EEEEEeCCCeEEEEEccCCCcccceeec---------------cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 72 DIIYVSSGKEVKSFDVHMPASWRPLESY---------------NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 72 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
.+++|+.||.| +||+++++....+... ..|...|++++|+|++++|++++.||.|++||+++++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 89999999999 9999976433322211 2234679999999999999999999999999999887
Q ss_pred Eece--ec--cc-------------cccceeEEEEcc----CC-CCC--CCCCC-----C----C---------------
Q 018858 137 LYKS--LR--AG-------------HSSICSSVQFIP----WK-PWE--GLPEN-----N----G--------------- 168 (349)
Q Consensus 137 ~~~~--~~--~~-------------~~~~v~~~~~~~----~~-~~~--~~~~~-----~----~--------------- 168 (349)
++.. +. .. +...|.+++|++ ++ ..+ +..+. . .
T Consensus 245 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~ 324 (902)
T 2oaj_A 245 MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGM 324 (902)
T ss_dssp EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHH
T ss_pred EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhh
Confidence 7543 21 01 234789999953 21 111 00000 0 0
Q ss_pred ---------------------------------------------------------CCccccC------------Ccee
Q 018858 169 ---------------------------------------------------------NAGQCYN------------PAFV 179 (349)
Q Consensus 169 ---------------------------------------------------------~~~~~~~------------~~~~ 179 (349)
..+.... ...+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v 404 (902)
T 2oaj_A 325 KNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLA 404 (902)
T ss_dssp HHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBE
T ss_pred hhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCe
Confidence 0000000 0111
Q ss_pred EEeecCcc----------------------------cccCCCCcEEEEEcCCCeEEEEEccCceeee--ec--------C
Q 018858 180 HAIAIPDA----------------------------DMLDKTNKICVVAKGDGVVDVINIESELNIS--RS--------K 221 (349)
Q Consensus 180 ~~~~~~~~----------------------------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~--------~ 221 (349)
.++++.+. .-..+++++|++|+.|++|++||+.++.... .+ .
T Consensus 405 ~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~ 484 (902)
T 2oaj_A 405 TTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLN 484 (902)
T ss_dssp EEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTT
T ss_pred eEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcC
Confidence 22222100 0012478899999999999999998763210 00 0
Q ss_pred CCCCCccceeeeeccccEEEEeeeeeecCc----e---------------------------------------------
Q 018858 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGG----K--------------------------------------------- 252 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------------------------------------------- 252 (349)
......+.+++|+|+|+++|+. ..|+.+. .
T Consensus 485 ~~h~~~V~svafspdg~~LAsg-s~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (902)
T 2oaj_A 485 KAKELAVDKISFAAETLELAVS-IETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQ 563 (902)
T ss_dssp CSSSCCEEEEEEETTTTEEEEE-ETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSE
T ss_pred CCCCCceeEEEecCCCCeEEEE-ecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCC
Confidence 1345678999999999999962 2222111 0
Q ss_pred eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc-ccccceEEEEee----
Q 018858 253 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKVNWLCTT---- 327 (349)
Q Consensus 253 ~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~---- 327 (349)
..+++..+.+|.+.|++++|+ |+| +||+|+.|++|++||+++...+.. ..+..+. +|...|++++|+
T Consensus 564 g~~~~~~l~~h~~~V~svafS---pdG-~lAsgs~D~tv~lwd~~~~~~~~~----~~~~~~~~gh~~~V~sv~Fs~~~~ 635 (902)
T 2oaj_A 564 GFMPSTAVHANKGKTSAINNS---NIG-FVGIAYAAGSLMLIDRRGPAIIYM----ENIREISGAQSACVTCIEFVIMEY 635 (902)
T ss_dssp EEEEEEEECCCSCSEEEEEEC---BTS-EEEEEETTSEEEEEETTTTEEEEE----EEGGGTCSSCCCCEEEEEEEEEEC
T ss_pred ccceeEEEEcCCCcEEEEEec---CCc-EEEEEeCCCcEEEEECCCCeEEEE----eehhHhccccccceEEEEEEEEec
Confidence 013466788899999999999 899 999999999999999987632110 0112343 899999999999
Q ss_pred -cCC---CCcEEEeeCCCeEEEeeC
Q 018858 328 -PTE---SENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 328 -~~~---~~~l~~~~~dg~i~iw~~ 348 (349)
| | +++|++++.|++|++||+
T Consensus 636 ~~-Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 636 GD-DGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TT-SSSEEEEEEEEETTSEEEEEEE
T ss_pred CC-CCCcceEEEEEecCCcEEEEEE
Confidence 7 5 479999999999999997
No 70
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.8e-37 Score=262.90 Aligned_cols=252 Identities=17% Similarity=0.275 Sum_probs=216.0
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++.++.+.+|.+.|.+++| + +++|++|+.||.|++||+.+++.+..+..|...|.+++|+ ++++++++.||.|+
T Consensus 162 ~~~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~ 236 (435)
T 1p22_A 162 TLECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIA 236 (435)
T ss_dssp SCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEE
T ss_pred CCeEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEE
Confidence 56778889999999999999 4 7899999999999999999999999999999999999997 45999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||++++........+.+|...|.+++| +++++++|+.||.|++||+++++.+..+. +|...+.++.|+
T Consensus 237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~-------- 305 (435)
T 1p22_A 237 VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR-------- 305 (435)
T ss_dssp EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--------
T ss_pred EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--------
Confidence 9999987655555667788899999999 67899999999999999999999999999 899999999884
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++++++|+.||.|++||++++
T Consensus 306 ------------------------------~~~l~~g~~dg~i~iwd~~~~----------------------------- 326 (435)
T 1p22_A 306 ------------------------------DRLVVSGSSDNTIRLWDIECG----------------------------- 326 (435)
T ss_dssp ------------------------------TTEEEEEETTSCEEEEETTTC-----------------------------
T ss_pred ------------------------------CCEEEEEeCCCeEEEEECCCC-----------------------------
Confidence 478999999999999999974
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
..+..+.+|...|.++.+ ++++|++|+.||.|++||+.+............+..+.+|.+.|++
T Consensus 327 -----------~~~~~~~~h~~~v~~~~~-----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 390 (435)
T 1p22_A 327 -----------ACLRVLEGHEELVRCIRF-----DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 390 (435)
T ss_dssp -----------CEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred -----------CEEEEEeCCcCcEEEEEe-----cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEE
Confidence 455677889999999986 4679999999999999999765321111111256677889999999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++| ++++|++++.||.|++||+.
T Consensus 391 l~~---~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 391 LQF---DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EEE---CSSCEEECCSSSEEEEEC--
T ss_pred EEe---CCCEEEEEeCCCEEEEEECC
Confidence 999 56689999999999999973
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.8e-36 Score=245.81 Aligned_cols=250 Identities=17% Similarity=0.167 Sum_probs=209.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++..+.+.+|...|.+++|+|+ +++|++++.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 54 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 132 (312)
T 4ery_A 54 DGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132 (312)
T ss_dssp TCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred CcccchhhccCCCceEEEEEcCC-CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 45667788999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||+++++ .+..+..|...+.+++|+|++++|++++.||.|++||+++++.+..+...+...+..++|+|
T Consensus 133 iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~------- 202 (312)
T 4ery_A 133 IWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP------- 202 (312)
T ss_dssp EEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-------
T ss_pred EEECCCCE---EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-------
Confidence 99998764 44556667889999999999999999999999999999998887776535667889999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc-cceeeee-ccccEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL-KGSQSTS-KVNIRDA 241 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 241 (349)
++++|++++.||.|++||+++++............ .....++ +++.+++
T Consensus 203 -----------------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
T 4ery_A 203 -----------------------------NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253 (312)
T ss_dssp -----------------------------TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred -----------------------------CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence 79999999999999999999988776655443222 2223344 5667776
Q ss_pred Eeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee--CCCeEEEEecC
Q 018858 242 EMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCS 297 (349)
Q Consensus 242 ~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~ 297 (349)
+ +..|+. .....+.+..+.+|...|.+++|+ |+++++++++ .|+.|++|+.+
T Consensus 254 s-g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 254 S-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH---PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp E-CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC---SSSSEEEEEECTTTCCEEEEECC
T ss_pred E-ECCCCEEEEEECCCchhhhhhhccCCcEEEEeec---CcCCceEEEEccCCccEEEecCC
Confidence 4 433332 222445677888999999999999 8999999987 69999999864
No 72
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-36 Score=257.01 Aligned_cols=241 Identities=18% Similarity=0.247 Sum_probs=195.9
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
.|++++|+|+ +++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+
T Consensus 125 ~v~~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 125 YIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp BEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 4999999998 899999999999999999999999999999999999999999999999999999999999976433222
Q ss_pred eeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceec------cccccceeEEEEccCCCCCCCCCCCCC
Q 018858 97 ESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLR------AGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
. +...+.+++|+| ++++|++|+.|+.|++||+++++.+..+. .+|...|.+++|+|
T Consensus 204 ---~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~------------- 266 (393)
T 1erj_A 204 ---S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR------------- 266 (393)
T ss_dssp ---E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-------------
T ss_pred ---E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-------------
Confidence 2 346799999999 88999999999999999999988776652 16788899999999
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee-----------cCCCCCCccceeeeecccc
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR-----------SKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 238 (349)
++++|++|+.||.|++||+++...... ........+..++++++++
T Consensus 267 -----------------------~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 323 (393)
T 1erj_A 267 -----------------------DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323 (393)
T ss_dssp -----------------------TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC
T ss_pred -----------------------CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC
Confidence 899999999999999999986432111 1112345678899999999
Q ss_pred EEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEee---ecCCccEEEEeeCCCeEEEEecCCC
Q 018858 239 RDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSM---FGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 239 ~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~---~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
++++ ++.|+. .......+..+.+|...|.+++|+| ++|++++|++|+.||.|++|++...
T Consensus 324 ~l~s-gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 324 YILS-GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEE-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEE-EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9985 333322 2223456677889999999999984 2347899999999999999998753
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-35 Score=255.13 Aligned_cols=274 Identities=18% Similarity=0.196 Sum_probs=225.6
Q ss_pred CCCeeeeCCceee-eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 6 AKPRRLRGHKATA-TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 6 ~~~~~l~~h~~~i-~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
+..+.+.+|.+.| .| +.++ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++++++.||.|++
T Consensus 109 ~~~~~l~~h~~~v~~~--~~~~-g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITC--LQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCCEEEECSTTSCEEE--EEEE-TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred ceeEEecccCCCcEEE--EEEc-CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 4678899999875 55 4455 7899999999999999999999999999999999999998 669999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
||++++ ..+..+..|...|.+++|+ ++.+++|+.||.|++||+++++.+..+. +|...+.+++|.
T Consensus 184 wd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~--------- 248 (445)
T 2ovr_B 184 WNAETG---ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQYD--------- 248 (445)
T ss_dssp EETTTT---EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEEC---------
T ss_pred EECCcC---cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEEC---------
Confidence 999876 4455667788999999995 5689999999999999999999999998 899999999883
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
++++++|+.||.|++||+++++....... ....+.++.+ ++..+++ +
T Consensus 249 -----------------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~-~ 295 (445)
T 2ovr_B 249 -----------------------------GRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQF--DGIHVVS-G 295 (445)
T ss_dssp -----------------------------SSCEEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEEEE--CSSEEEE-E
T ss_pred -----------------------------CCEEEEEcCCCEEEEEECCCCcEeEEecC-CCCceEEEEE--CCCEEEE-E
Confidence 57899999999999999998877665543 3456677777 7777774 3
Q ss_pred eeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc---c
Q 018858 245 ILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN---L 317 (349)
Q Consensus 245 ~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~---~ 317 (349)
..++. .....+.+..+.+|...+.++.++ ++++++++.||.|++||++++ ..+..+.. |
T Consensus 296 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~ 361 (445)
T 2ovr_B 296 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-----DNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKH 361 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE-----TTEEEEEETTSCEEEEETTTC---------CEEEEECSTTSC
T ss_pred eCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe-----CCEEEEEeCCCeEEEEECCCC---------cEEEEEccCCCC
Confidence 32222 222345667788899999888765 569999999999999999887 44444443 8
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
...|++++|+ +++|++++.||.|++||++
T Consensus 362 ~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 362 QSAVTCLQFN---KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp SSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEEC---CCEEEEEeCCCeEEEEECC
Confidence 8899999994 4599999999999999974
No 74
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=243.93 Aligned_cols=251 Identities=13% Similarity=0.179 Sum_probs=207.0
Q ss_pred cCCCCeeee--CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 4 AEAKPRRLR--GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~--~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
+++.++.++ +|...|++++|+|+ +++|++|+.||+|++||+++++.+..+.+|...+.++.+ ++..+++++.++.
T Consensus 54 tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~ 130 (318)
T 4ggc_A 54 SGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGH 130 (318)
T ss_dssp TCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred CCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCc
Confidence 456666654 67888999999998 899999999999999999999999999999988877655 5679999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe----ceeccccccceeEEEEccC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY----KSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~ 157 (349)
+++|+..... ..+..+..|...+..+.+.++++++++++.|+.|++||+++++.. .... .+...+.++.+.|+
T Consensus 131 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 207 (318)
T 4ggc_A 131 IHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPW 207 (318)
T ss_dssp EEEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC-CCCSCEEEEEECTT
T ss_pred eEeeecCCCc--eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeec-ccCCceEEEEecCC
Confidence 9999988643 445566678899999999999999999999999999999876532 2233 56778899999884
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcE--EEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI--CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
.... +++++.++.|++||.+...
T Consensus 208 -----------------------------------~~~~~~~~~~~~~~~i~lwd~~~~~-------------------- 232 (318)
T 4ggc_A 208 -----------------------------------QSNVLATGGGTSDRHIRIWNVCSGA-------------------- 232 (318)
T ss_dssp -----------------------------------STTEEEEEECTTTCEEEEEETTTCC--------------------
T ss_pred -----------------------------------CCcEEEEEecCCCCEEEEEeccccc--------------------
Confidence 3343 3467789999999998731
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee--CCCeEEEEecCCCcceecccccceeee
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
. .....+...+..+.++ ++++.+++++ .|+.|++||++++ ..+..
T Consensus 233 --------------------~-~~~~~~~~~v~~~~~~---~~~~~~~~~sg~~d~~i~iwd~~~~---------~~~~~ 279 (318)
T 4ggc_A 233 --------------------C-LSAVDAHSQVCSILWS---PHYKELISGHGFAQNQLVIWKYPTM---------AKVAE 279 (318)
T ss_dssp --------------------E-EEEEECSSCEEEEEEE---TTTTEEEEEECTTTCCEEEEETTTC---------CEEEE
T ss_pred --------------------c-cccccceeeeeeeeec---ccccceEEEEEcCCCEEEEEECCCC---------cEEEE
Confidence 1 1223356678999999 7888776654 7999999999998 67778
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+|.+.|++++|+| ++++|++++.||+|+|||+.
T Consensus 280 l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 280 LKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF 314 (318)
T ss_dssp ECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred EcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence 889999999999988 88899999999999999973
No 75
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-37 Score=261.92 Aligned_cols=254 Identities=18% Similarity=0.222 Sum_probs=207.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-------EEEEeecCCCCeEEEEEecC-CCEEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------VQLVTDVGNGPVTSLCFKSG-NEDIIY 75 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~ 75 (349)
+++..+.+++|...|.+++|+|+ +++|++|+.|+.+++||+.+.. ....+.+|...|.++.|+|+ +..|++
T Consensus 97 ~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s 175 (380)
T 3iz6_a 97 TSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175 (380)
T ss_dssp TTEEEEEEECCCTTCCCCEECTT-SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE
T ss_pred CCccceEEecCCCCEEEEEECCC-CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE
Confidence 45677889999999999999998 8999999999999999986532 24567889999999999996 456999
Q ss_pred EeCCCeEEEEEccCCCccccee--eccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcC-CceEeceeccccccceeE
Q 018858 76 VSSGKEVKSFDVHMPASWRPLE--SYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSS 151 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~ 151 (349)
|+.|+.|++||+++++....+. ...+|...+.+++|++ ++++|++|+.|+.|++||++ ..+.+..+. +|...|.+
T Consensus 176 ~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~ 254 (380)
T 3iz6_a 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINS 254 (380)
T ss_dssp ECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCE
T ss_pred ECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEE
Confidence 9999999999999875443332 1256788999999987 78999999999999999998 556777888 89999999
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC------C
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT------K 225 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~ 225 (349)
++|+| ++++|++|+.||+|++||++++.......... .
T Consensus 255 v~~~p------------------------------------~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 298 (380)
T 3iz6_a 255 VKFFP------------------------------------DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNEL 298 (380)
T ss_dssp EEECT------------------------------------TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSS
T ss_pred EEEec------------------------------------CCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccccc
Confidence 99999 79999999999999999999987766443321 2
Q ss_pred CccceeeeeccccEEEEeeeeeecCc----eeeeeeeee----cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 226 PLKGSQSTSKVNIRDAEMEILDQSGG----KRLHLDYSV----GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
..+..++|+|+|+++++ +..++.+. ...+....+ .+|.+.|++++|+ |++++|++|+.|+.|++|++.
T Consensus 299 ~~v~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s---~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 299 PIVTSVAFSISGRLLFA-GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS---SDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CSCSEEEECSSSSEEEE-ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---SSSSEEEEECTTSCEEEEECC
T ss_pred CceEEEEECCCCCEEEE-EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---CCCCEEEEeeCCCCEEEEecC
Confidence 34789999999999985 32222211 111222222 6799999999999 899999999999999999998
Q ss_pred CC
Q 018858 298 RF 299 (349)
Q Consensus 298 ~~ 299 (349)
..
T Consensus 375 ~~ 376 (380)
T 3iz6_a 375 GH 376 (380)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 76
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.5e-35 Score=255.65 Aligned_cols=278 Identities=15% Similarity=0.149 Sum_probs=227.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++.++.+.+|.+.|.+++|+ ++++++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++.+++++.||.|+
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~ 222 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLR 222 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred CCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEE
Confidence 567788999999999999997 4599999999999999999999999999999999999996 56899999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||+++++ .+..+..|...+.++++ +++++++|+.||.|++||+++++.+..+. +|...+.+++|
T Consensus 223 ~wd~~~~~---~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--------- 287 (445)
T 2ovr_B 223 VWDIETGQ---CLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--------- 287 (445)
T ss_dssp EEESSSCC---EEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE---------
T ss_pred EEECCCCc---EEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE---------
Confidence 99999764 34555667889999999 67899999999999999999999999998 89999999998
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++.++++++.||.|++||+++++........ ...+..+. +++.++++
T Consensus 288 -----------------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~--~~~~~l~~- 334 (445)
T 2ovr_B 288 -----------------------------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGME--LKDNILVS- 334 (445)
T ss_dssp -----------------------------CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEE--EETTEEEE-
T ss_pred -----------------------------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEE--EeCCEEEE-
Confidence 3578999999999999999988776655433 23344444 45666664
Q ss_pred eeeeecC----ceeeeeeeeecC---CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec--
Q 018858 244 EILDQSG----GKRLHLDYSVGG---HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-- 314 (349)
Q Consensus 244 ~~~~~~~----~~~~~~~~~~~~---h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-- 314 (349)
+..++.+ ....+.+..+.+ |...|+++.|+ +++|++|+.||.|++||+.+++ .+..+
T Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~v~iwd~~~~~---------~~~~~~~ 400 (445)
T 2ovr_B 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-----KNFVITSSDDGTVKLWDLKTGE---------FIRNLVT 400 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-----SSEEEEEETTSEEEEEETTTCC---------EEEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC-----CCEEEEEeCCCeEEEEECCCCc---------eeeeeec
Confidence 3333221 122344455554 88899999986 4799999999999999999984 33333
Q ss_pred ---cccccceEEEEeecCCCCcEEEeeCCCe----EEEeeCC
Q 018858 315 ---INLNKKVNWLCTTPTESENLVVCDTSKV----VKVYSIS 349 (349)
Q Consensus 315 ---~~~~~~v~~~~~~~~~~~~l~~~~~dg~----i~iw~~~ 349 (349)
..|.+.|++++|+| ++.++++++.||. |.+||++
T Consensus 401 ~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp CTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred cccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECC
Confidence 46888999999988 8889999999997 9999974
No 77
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.6e-36 Score=270.94 Aligned_cols=281 Identities=15% Similarity=0.103 Sum_probs=228.9
Q ss_pred CCCeeeeCCcee-eeEEEEec--CCCceEEEeCCCCcEEEEECCCC--------cEEEEeecCCCCeEEEEEecCCCEEE
Q 018858 6 AKPRRLRGHKAT-ATCCIASR--DRPGFVASSGEDGCICWFDLRSK--------DVQLVTDVGNGPVTSLCFKSGNEDII 74 (349)
Q Consensus 6 ~~~~~l~~h~~~-i~~~~~~~--~~~~~l~t~~~dg~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~ 74 (349)
+.++.+.+|.+. |++++|+| + +++|++++.||.|++||+.++ +....+..|..+|.+++|+|++++|+
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCC-CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence 688899999999 99999999 8 899999999999999999754 56778888999999999999999999
Q ss_pred EEeCC----CeEEEEEccCCCcccceeeccCcccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCceEeceecccccc--
Q 018858 75 YVSSG----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAGHSS-- 147 (349)
Q Consensus 75 ~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-- 147 (349)
+++.+ +.|++||.. ..+..+..|...|.+++|+|+++ .+++++.|+.|++||+++++.+..+. .|..
T Consensus 133 ~~~~~~~~~~~v~~~d~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~ 206 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWDSG-----NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-THHKQG 206 (615)
T ss_dssp EEECCSSCSEEEEETTTC-----CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-SSSCTT
T ss_pred EeccCCCCccEEEEEECC-----CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec-ccCCCC
Confidence 99987 688888832 34566677889999999999997 89999999999999999999999998 8888
Q ss_pred -ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC-CcEEEEEcCCCeEEEEEccCceeeeecCC---
Q 018858 148 -ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT-NKICVVAKGDGVVDVINIESELNISRSKS--- 222 (349)
Q Consensus 148 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--- 222 (349)
.|.+++|+| + +++|++++.||.|++||+++++.......
T Consensus 207 ~~v~~~~~~~------------------------------------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 250 (615)
T 1pgu_A 207 SFVRDVEFSP------------------------------------DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 250 (615)
T ss_dssp CCEEEEEECS------------------------------------TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred ceEEEEEECC------------------------------------CCCCEEEEEeCCCeEEEEECCCCCEeEEeccccc
Confidence 899999999 7 99999999999999999999887777644
Q ss_pred CCCCccceeeeeccccEEEEeee---eeecCceeeeeeeeecCC----CcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 223 TTKPLKGSQSTSKVNIRDAEMEI---LDQSGGKRLHLDYSVGGH----TAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h----~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
.....+..++|+ +++++++.+. ...+.....+....+..+ ...+.++.+. +++++++++.|+.|++||
T Consensus 251 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~g~i~~~d 325 (615)
T 1pgu_A 251 PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT----GNGRIISLSLDGTLNFYE 325 (615)
T ss_dssp CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE----ETTEEEEEETTSCEEEEE
T ss_pred ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC----CCCeEEEEECCCCEEEEE
Confidence 567889999999 9998886432 111112223344445444 4567778774 788999999999999999
Q ss_pred cCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 296 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.++ ..+..+.+|...|.+++| | + +++++.||.|++|++
T Consensus 326 ~~~~---------~~~~~~~~~~~~v~~~~~-~-~---l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 326 LGHD---------EVLKTISGHNKGITALTV-N-P---LISGSYDGRIMEWSS 364 (615)
T ss_dssp TTEE---------EEEEEECCCSSCEEEEET-T-T---TEEEETTSCEEETTT
T ss_pred CCCC---------cEEEEEeCCCCCEEEEEe-c-C---cEEECCCCeEEEEEc
Confidence 9986 455556667777777777 5 3 666666666666654
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.4e-37 Score=260.09 Aligned_cols=251 Identities=12% Similarity=0.149 Sum_probs=206.5
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-------cEEEEeecCCCCeEEEEEecCC-CEEEEEe
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSGN-EDIIYVS 77 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~ 77 (349)
..+..+.+|.+.|++++|+|.++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++ ++|++++
T Consensus 72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence 3566788999999999999933899999999999999999987 5678889999999999999998 6999999
Q ss_pred CCCeEEEEEccCCCcccceeec--cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEecee-ccccccc-eeEEE
Q 018858 78 SGKEVKSFDVHMPASWRPLESY--NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL-RAGHSSI-CSSVQ 153 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~-v~~~~ 153 (349)
.|+.|++||+++++ .+..+ ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ . .|... +.++.
T Consensus 152 ~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~ 227 (402)
T 2aq5_A 152 CDNVILVWDVGTGA---AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR-PHEGTRPVHAV 227 (402)
T ss_dssp TTSCEEEEETTTTE---EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-SSCSSSCCEEE
T ss_pred CCCEEEEEECCCCC---ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc-CCCCCcceEEE
Confidence 99999999999763 34444 568889999999999999999999999999999999998888 5 67665 89999
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE---cCCCeEEEEEccCceeeeecCCCCCCccce
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA---KGDGVVDVINIESELNISRSKSTTKPLKGS 230 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (349)
|+| ++.+|++| +.|+.|++||+++...
T Consensus 228 ~~~------------------------------------~~~~l~~g~~~~~d~~i~iwd~~~~~~-------------- 257 (402)
T 2aq5_A 228 FVS------------------------------------EGKILTTGFSRMSERQVALWDTKHLEE-------------- 257 (402)
T ss_dssp ECS------------------------------------TTEEEEEEECTTCCEEEEEEETTBCSS--------------
T ss_pred EcC------------------------------------CCcEEEEeccCCCCceEEEEcCccccC--------------
Confidence 999 78999999 7999999999986421
Q ss_pred eeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEE-EeeCCCeEEEEecCCCcceecccccc
Q 018858 231 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~ 309 (349)
........|...+.++.|+ |++++|+ +++.|+.|++||+.+++.
T Consensus 258 ------------------------~~~~~~~~~~~~v~~~~~s---~~~~~l~~~g~~dg~i~i~d~~~~~~-------- 302 (402)
T 2aq5_A 258 ------------------------PLSLQELDTSSGVLLPFFD---PDTNIVYLCGKGDSSIRYFEITSEAP-------- 302 (402)
T ss_dssp ------------------------CSEEEECCCCSSCEEEEEE---TTTTEEEEEETTCSCEEEEEECSSTT--------
T ss_pred ------------------------CceEEeccCCCceeEEEEc---CCCCEEEEEEcCCCeEEEEEecCCCc--------
Confidence 0001112466779999999 8999886 455799999999998741
Q ss_pred eeeeccc--cccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 310 LLIKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 310 ~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+..+.. |...|.+++|+| ++.+++ +.|+.+++|++
T Consensus 303 ~~~~l~~~~~~~~v~~~~~sp-~~~~~~--s~~~~~~~~~l 340 (402)
T 2aq5_A 303 FLHYLSMFSSKESQRGMGYMP-KRGLEV--NKCEIARFYKL 340 (402)
T ss_dssp CEEEEEEECCSSCCSEEEECC-GGGSCG--GGTEEEEEEEE
T ss_pred ceEeecccccCCcccceEEec-ccccce--ecceeEEEEEc
Confidence 1222222 568999999988 666654 46779999986
No 79
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-36 Score=274.66 Aligned_cols=249 Identities=19% Similarity=0.228 Sum_probs=204.4
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
..+.+.+|...|.+++|+|+ +++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 422 ~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp EEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccceecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 45678999999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCC--CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
..............+|...|.+++|+|++ ..+++++.|+.|++||+++++....+. +|...|.+++|+|
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~sp-------- 571 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSP-------- 571 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECT--------
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeC--------
Confidence 86432222223345678889999999986 589999999999999999999988998 9999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
++++|++|+.||.|++||+++++....... ...+..++|+|++.++++..
T Consensus 572 ----------------------------dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~ 621 (694)
T 3dm0_A 572 ----------------------------DGSLCASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRYWLCAAT 621 (694)
T ss_dssp ----------------------------TSSEEEEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSSSSEEEEEE
T ss_pred ----------------------------CCCEEEEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEEc
Confidence 899999999999999999999887665543 45688999999999988632
Q ss_pred eeee--cCceeeeeeeeecC-------------------CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 245 ILDQ--SGGKRLHLDYSVGG-------------------HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 245 ~~~~--~~~~~~~~~~~~~~-------------------h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
.... +.......+..+.. +...+++++|+ |+|++|++|+.||.|+||++..
T Consensus 622 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s---pdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 622 EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS---ADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEEC---TTSSEEEEEETTSEEEEEEC--
T ss_pred CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEc---CCCCEEEEEcCCCeEEEEeccC
Confidence 2111 11111112222211 11247889999 9999999999999999999864
No 80
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-36 Score=253.22 Aligned_cols=208 Identities=15% Similarity=0.170 Sum_probs=180.6
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEEcc
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 88 (349)
.+.+|.+.|++++|+|+ +++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||++
T Consensus 134 ~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~ 212 (357)
T 4g56_B 134 AKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212 (357)
T ss_dssp EECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred ccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence 34589999999999998 89999999999999999999999999999999999999999875 78899999999999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
+++....+. ...+...+.+++|+|++ .+|++|+.|+.|++||+++++.+..+. +|...|.+++|+|+
T Consensus 213 ~~~~~~~~~-~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~---------- 280 (357)
T 4g56_B 213 KPKPATRID-FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-VHSQNITGLAYSYH---------- 280 (357)
T ss_dssp SSSCBCBCC-CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-CCSSCEEEEEECSS----------
T ss_pred CCceeeeee-eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-ccceeEEEEEEcCC----------
Confidence 875443332 33456789999999975 688999999999999999999988998 89999999999993
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
.+++|++|+.|++|++||++++
T Consensus 281 -------------------------~~~~lasgs~D~~i~iwd~~~~--------------------------------- 302 (357)
T 4g56_B 281 -------------------------SSPFLASISEDCTVAVLDADFS--------------------------------- 302 (357)
T ss_dssp -------------------------SSCCEEEEETTSCEEEECTTSC---------------------------------
T ss_pred -------------------------CCCEEEEEeCCCEEEEEECCCC---------------------------------
Confidence 3468999999999999999874
Q ss_pred ecCceeeeeeeeecCCCcceEEEEEeeecC-CccEEEEeeCCCeEEEEecCCC
Q 018858 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
+++. ..+|...|++++|+ | ++++|++++.|++|++|++.+.
T Consensus 303 -------~~~~-~~~H~~~V~~vafs---P~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 303 -------EVFR-DLSHRDFVTGVAWS---PLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp -------EEEE-ECCCSSCEEEEEEC---SSSTTEEEEEETTSCEEEEECC--
T ss_pred -------cEeE-ECCCCCCEEEEEEe---CCCCCEEEEEcCCCeEEEEECCCC
Confidence 2222 34799999999999 6 7899999999999999999774
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.4e-36 Score=255.68 Aligned_cols=245 Identities=14% Similarity=0.229 Sum_probs=202.0
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCC
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
....++++|+...++++++.||.|++|++.... .+..+.+|...|.+++|+| ++++|++++.||.|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 345578888733455568899999999996542 3456778999999999999 99999999999999999998763
Q ss_pred cc----cceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEecee--ccccccceeEEEEccCCCCCCCC
Q 018858 92 SW----RPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSL--RAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 92 ~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
.. ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+ . .|...|.+++|+|
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~-------- 186 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD-VHPDTIYSVDWSR-------- 186 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT-TCCSCEEEEEECT--------
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC-CCCCceEEEEECC--------
Confidence 22 3455667788999999999998 69999999999999999999998888 6 8999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
++++|++++.||.|++||++++
T Consensus 187 ----------------------------~~~~l~~~~~d~~i~iwd~~~~------------------------------ 208 (402)
T 2aq5_A 187 ----------------------------DGALICTSCRDKRVRVIEPRKG------------------------------ 208 (402)
T ss_dssp ----------------------------TSSCEEEEETTSEEEEEETTTT------------------------------
T ss_pred ----------------------------CCCEEEEEecCCcEEEEeCCCC------------------------------
Confidence 7899999999999999999975
Q ss_pred eeeecCceeeeeeeee-cCCCcc-eEEEEEeeecCCccEEEEe---eCCCeEEEEecCCCcceecccccceeeecccccc
Q 018858 245 ILDQSGGKRLHLDYSV-GGHTAA-ASCVAFSMFGERGKYLISG---GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK 319 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~-~~h~~~-i~~i~~~~~~~~~~~l~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 319 (349)
..+..+ .+|.+. +.++.|+ |++++|++| +.|+.|++||+.+... ........|..
T Consensus 209 ----------~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~g~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~ 268 (402)
T 2aq5_A 209 ----------TVVAEKDRPHEGTRPVHAVFV---SEGKILTTGFSRMSERQVALWDTKHLEE-------PLSLQELDTSS 268 (402)
T ss_dssp ----------EEEEEEECSSCSSSCCEEEEC---STTEEEEEEECTTCCEEEEEEETTBCSS-------CSEEEECCCCS
T ss_pred ----------ceeeeeccCCCCCcceEEEEc---CCCcEEEEeccCCCCceEEEEcCccccC-------CceEEeccCCC
Confidence 344455 567665 8999999 899999999 7999999999988642 12223345778
Q ss_pred ceEEEEeecCCCCcEEEe-eCCCeEEEeeCC
Q 018858 320 KVNWLCTTPTESENLVVC-DTSKVVKVYSIS 349 (349)
Q Consensus 320 ~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~ 349 (349)
.+.+++|+| ++++|+++ +.||.|++|++.
T Consensus 269 ~v~~~~~s~-~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 269 GVLLPFFDP-DTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp SCEEEEEET-TTTEEEEEETTCSCEEEEEEC
T ss_pred ceeEEEEcC-CCCEEEEEEcCCCeEEEEEec
Confidence 899999988 77777654 579999999974
No 82
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=244.17 Aligned_cols=252 Identities=13% Similarity=0.124 Sum_probs=214.7
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC----
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---- 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 79 (349)
+++.++.+.+|...|.+++|+|+ +++|++++.||.|++||+.+++.+..+. +...|.+++|+|+++++++++.+
T Consensus 63 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~ 140 (369)
T 3zwl_B 63 NGERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKN 140 (369)
T ss_dssp TCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTB
T ss_pred CchhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCC
Confidence 56778889999999999999998 8999999999999999999999988888 88999999999999999999998
Q ss_pred -CeEEEEEccCCCcccc--------eeeccCccc--ceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEeceecccccc
Q 018858 80 -KEVKSFDVHMPASWRP--------LESYNYNKE--EINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSS 147 (349)
Q Consensus 80 -g~i~iwd~~~~~~~~~--------~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~ 147 (349)
+.|++||+........ +..+..+.. .+.+++|+|++++|++++.||.|++||+++ .+.+..+. .|..
T Consensus 141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~ 219 (369)
T 3zwl_B 141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEK 219 (369)
T ss_dssp CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSS
T ss_pred CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCC
Confidence 9999999986543222 222233334 899999999999999999999999999998 78888888 8999
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
.|.+++|+| ++++|++++.||.|++||+++.+...... ....
T Consensus 220 ~v~~~~~~~------------------------------------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~ 261 (369)
T 3zwl_B 220 SISDMQFSP------------------------------------DLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCP 261 (369)
T ss_dssp CEEEEEECT------------------------------------TSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSC
T ss_pred ceeEEEECC------------------------------------CCCEEEEecCCceEEEEECCCCceeeeec--CCCC
Confidence 999999999 79999999999999999999887766555 4567
Q ss_pred cceeeeeccccEEEEeeeeee-----------------cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCe
Q 018858 228 KGSQSTSKVNIRDAEMEILDQ-----------------SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~ 290 (349)
+..++|+|+++++++.+.... ........+..+.+|...|++++|+ |++++|++++.||.
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS---PQGTSYASGGEDGF 338 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---CCCCEEEEEcCCCe
Confidence 889999999999996443221 1111234556778899999999999 89999999999999
Q ss_pred EEEEecCCC
Q 018858 291 VKVWDCSRF 299 (349)
Q Consensus 291 i~vwd~~~~ 299 (349)
|++|+++..
T Consensus 339 v~iw~~~~~ 347 (369)
T 3zwl_B 339 IRLHHFEKS 347 (369)
T ss_dssp EEEEEECHH
T ss_pred EEEEECccc
Confidence 999999875
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-35 Score=248.98 Aligned_cols=240 Identities=17% Similarity=0.213 Sum_probs=199.7
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
.+|...+.+.+++++ +..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++++.||.|++||+.++
T Consensus 88 ~~~~~~~~~~~~~~s-~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 88 PGIIDDYYLNLLDWS-NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TTCCCCTTCBCEEEC-TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCcCCceEEEEeec-CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 367666544444444 35688888999999999999998777766 7899999999999999999999999999999876
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC-CceEeceeccccccceeEEEEccCCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
+ .+..+..|...|.+++|+ +++|++++.||.|++||++ .......+. .|...|.+++|+|
T Consensus 167 ~---~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~------------- 227 (401)
T 4aez_A 167 T---KLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRS------------- 227 (401)
T ss_dssp C---EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECT-------------
T ss_pred e---EEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcC-------------
Confidence 4 445566788999999994 5799999999999999999 566677788 8999999999999
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 249 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
++++|++++.||.|++||+++.
T Consensus 228 -----------------------~~~~l~s~~~d~~v~iwd~~~~----------------------------------- 249 (401)
T 4aez_A 228 -----------------------DGLQLASGGNDNVVQIWDARSS----------------------------------- 249 (401)
T ss_dssp -----------------------TSSEEEEEETTSCEEEEETTCS-----------------------------------
T ss_pred -----------------------CCCEEEEEeCCCeEEEccCCCC-----------------------------------
Confidence 7999999999999999999974
Q ss_pred CceeeeeeeeecCCCcceEEEEEeeecCCc-cEEEEee--CCCeEEEEecCCCcceecccccceeeeccccccceEEEEe
Q 018858 250 GGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 326 (349)
Q Consensus 250 ~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (349)
.....+..|...|.+++|+ |++ .++++++ .|+.|++||+.++ ..+..+ .+...|.+++|
T Consensus 250 -----~~~~~~~~~~~~v~~~~~~---p~~~~ll~~~~gs~d~~i~i~d~~~~---------~~~~~~-~~~~~v~~~~~ 311 (401)
T 4aez_A 250 -----IPKFTKTNHNAAVKAVAWC---PWQSNLLATGGGTMDKQIHFWNAATG---------ARVNTV-DAGSQVTSLIW 311 (401)
T ss_dssp -----SEEEEECCCSSCCCEEEEC---TTSTTEEEEECCTTTCEEEEEETTTC---------CEEEEE-ECSSCEEEEEE
T ss_pred -----CccEEecCCcceEEEEEEC---CCCCCEEEEecCCCCCEEEEEECCCC---------CEEEEE-eCCCcEEEEEE
Confidence 4455677899999999999 755 5666665 7999999999987 333333 46678999999
Q ss_pred ecCCCCcEEEe--eCCCeEEEeeC
Q 018858 327 TPTESENLVVC--DTSKVVKVYSI 348 (349)
Q Consensus 327 ~~~~~~~l~~~--~~dg~i~iw~~ 348 (349)
+| ++++++++ +.||.|++|++
T Consensus 312 s~-~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 312 SP-HSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp CS-SSSEEEEEECTTTCEEEEEEE
T ss_pred CC-CCCeEEEEeecCCCcEEEEec
Confidence 88 78888885 48999999996
No 84
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.3e-34 Score=249.03 Aligned_cols=231 Identities=19% Similarity=0.290 Sum_probs=202.0
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
.+|...|.|+.+ + +++|++|+.||.|++||+.+++....+.+|...|.+++| ++++|++|+.||.|++||+++++
T Consensus 130 ~~~~~~v~~~~~--d-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 130 SETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CSSCCCEEEEEC--C-SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred cCCCCcEEEEEE--C-CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 456778999887 4 789999999999999999999999999999999999998 68899999999999999999764
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe---ceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
.+..+..|...|.+++|++ .++++|+.||.|++||+++++.. ..+. +|...|.+++|.
T Consensus 205 ---~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~------------- 265 (435)
T 1p22_A 205 ---MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD------------- 265 (435)
T ss_dssp ---EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEEE-------------
T ss_pred ---EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEec-CCCCcEEEEEeC-------------
Confidence 4455667889999999974 59999999999999999977654 5566 788899999883
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
++++++|+.||.|++||++++
T Consensus 266 -------------------------~~~l~s~~~dg~i~vwd~~~~---------------------------------- 286 (435)
T 1p22_A 266 -------------------------DKYIVSASGDRTIKVWNTSTC---------------------------------- 286 (435)
T ss_dssp -------------------------TTEEEEEETTSEEEEEETTTC----------------------------------
T ss_pred -------------------------CCEEEEEeCCCeEEEEECCcC----------------------------------
Confidence 578999999999999999974
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
..+..+.+|...|.++.++ ++++++|+.||.|++||++++ ..+..+.+|...|.++++
T Consensus 287 ------~~~~~~~~~~~~v~~~~~~-----~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 287 ------EFVRTLNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECG---------ACLRVLEGHEELVRCIRF-- 344 (435)
T ss_dssp ------CEEEEEECCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEC--
T ss_pred ------cEEEEEcCCCCcEEEEEeC-----CCEEEEEeCCCeEEEEECCCC---------CEEEEEeCCcCcEEEEEe--
Confidence 4556777899999999875 579999999999999999987 667778889999999998
Q ss_pred CCCCcEEEeeCCCeEEEeeC
Q 018858 329 TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~iw~~ 348 (349)
++++|++++.||.|++||+
T Consensus 345 -~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEH
T ss_pred -cCCEEEEEeCCCcEEEEEC
Confidence 5669999999999999996
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.1e-35 Score=239.21 Aligned_cols=221 Identities=16% Similarity=0.123 Sum_probs=181.1
Q ss_pred CCCCeeeeCCceeeeEEEEecC-CCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecC--CCEEEEEeCC
Q 018858 5 EAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSG--NEDIIYVSSG 79 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 79 (349)
.+.+++|.+|.++|++++|+|+ ++++|++|+.|++|++||+++++ .+..+..|...|.+++|+|+ +.+|++++.|
T Consensus 43 ~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d 122 (297)
T 2pm7_B 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122 (297)
T ss_dssp BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC
Confidence 4678899999999999999863 37899999999999999998774 45677889999999999997 8899999999
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccC-------------CCEEEEEcCCCcEEEEEcCCce----Eeceec
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-------------SSFLACADDGGDVKIIDIRQHC----LYKSLR 142 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~ 142 (349)
+.|++||++++.... ...+..|...|.+++|+|+ +++|++|+.|+.|++||+++++ ....+.
T Consensus 123 ~~v~~wd~~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~ 201 (297)
T 2pm7_B 123 GKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201 (297)
T ss_dssp SEEEEEEBCSSSCBC-CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CcEEEEEecCCCcee-eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec
Confidence 999999998653221 2445678889999999997 4799999999999999998754 556777
Q ss_pred cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC
Q 018858 143 AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 222 (349)
Q Consensus 143 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 222 (349)
+|...|.+++|+|++. .+.+|++++.|++|++||++.....
T Consensus 202 -~H~~~V~~v~~sp~~~---------------------------------~~~~las~s~D~~v~iWd~~~~~~~----- 242 (297)
T 2pm7_B 202 -GHSDWVRDVAWSPTVL---------------------------------LRSYMASVSQDRTCIIWTQDNEQGP----- 242 (297)
T ss_dssp -CCSSCEEEEEECCCCS---------------------------------SSEEEEEEETTSCEEEEEESSTTSC-----
T ss_pred -CCCCceEEEEECCCCC---------------------------------CceEEEEEECCCcEEEEEeCCCCCc-----
Confidence 8999999999999310 1589999999999999999853100
Q ss_pred CCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 223 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
..........|...|.+++|+ |++++|++++.|+.|++|+...
T Consensus 243 ------------------------------~~~~~~~~~~~~~~v~~~~~s---~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 243 ------------------------------WKKTLLKEEKFPDVLWRASWS---LSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ------------------------------CEEEESSSSCCSSCEEEEEEC---SSSCCEEEEETTSCEEEEEECT
T ss_pred ------------------------------cceeeeecccCCCcEEEEEEC---CCCCEEEEEcCCCcEEEEEECC
Confidence 000111124577899999999 8999999999999999999864
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-34 Score=243.79 Aligned_cols=251 Identities=12% Similarity=0.075 Sum_probs=205.8
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.++.+.+|...|.+++|+|+ +++|++++.||.|++||+++++.... +..|...|.+++|+|++++|++++.|+.|++
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp EEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred eeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 77889999999999999998 89999999999999999988875443 4668999999999999999999999999999
Q ss_pred EEccCCCcccceee-ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC------------------CceEeceecccc
Q 018858 85 FDVHMPASWRPLES-YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR------------------QHCLYKSLRAGH 145 (349)
Q Consensus 85 wd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~ 145 (349)
||++.+........ ...|...+.+++|+|++++|++++.||.|++||++ .++.+..+. .|
T Consensus 123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 201 (372)
T 1k8k_C 123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SS 201 (372)
T ss_dssp EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CC
T ss_pred EEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CC
Confidence 99997653333333 35567899999999999999999999999999954 567778887 78
Q ss_pred ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCC
Q 018858 146 SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 225 (349)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 225 (349)
...+.+++|+| ++++|++++.||.|++||+++++....... ..
T Consensus 202 ~~~v~~~~~~~------------------------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~ 244 (372)
T 1k8k_C 202 CGWVHGVCFSA------------------------------------NGSRVAWVSHDSTVCLADADKKMAVATLAS-ET 244 (372)
T ss_dssp SSCEEEEEECS------------------------------------SSSEEEEEETTTEEEEEEGGGTTEEEEEEC-SS
T ss_pred CCeEEEEEECC------------------------------------CCCEEEEEeCCCEEEEEECCCCceeEEEcc-CC
Confidence 88999999999 789999999999999999998876665543 35
Q ss_pred CccceeeeeccccEEEEeeeeeecCce----e----------------------------------eeee------eee-
Q 018858 226 PLKGSQSTSKVNIRDAEMEILDQSGGK----R----------------------------------LHLD------YSV- 260 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------------------------------~~~~------~~~- 260 (349)
..+..++|+|+++++++. .+..+.. . .... ..+
T Consensus 245 ~~v~~~~~~~~~~~l~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 245 LPLLAVTFITESSLVAAG--HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp CCEEEEEEEETTEEEEEE--TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCeEEEEEecCCCEEEEE--eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 578899999999988853 2221110 0 0000 223
Q ss_pred cCCCcceEEEEEeeecCCc---cEEEEeeCCCeEEEEecCCCc
Q 018858 261 GGHTAAASCVAFSMFGERG---KYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 261 ~~h~~~i~~i~~~~~~~~~---~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.+|...|++++|.+ ++| ++|++++.||.|++||+++.+
T Consensus 323 ~~h~~~v~~~~~~~--~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 323 SLHKNSVSQISVLS--GGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSCEEEEEEEE--STTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccCCcceeEEec--CCCcceeeEEEecCCCceEEEEecChh
Confidence 48999999999775 676 999999999999999998753
No 87
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-36 Score=251.76 Aligned_cols=249 Identities=12% Similarity=0.052 Sum_probs=188.4
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+.++.+.+|.+.|++++|+|+ +++|++++.|+.|++||+.+++ ....+..|...|.+++|+|++++|++++.|+.|
T Consensus 46 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 124 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVI 124 (377)
T ss_dssp EECCCBCCCSSCEEEEEECTT-TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCE
T ss_pred EEEEEEecCCceEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeE
Confidence 577889999999999999998 8999999999999999999876 567788899999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccC-cccceEEEEEccCCCEEEEEcCCCcEEEEEcC------------------CceEeceecc
Q 018858 83 KSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIR------------------QHCLYKSLRA 143 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~ 143 (349)
++||+++++.......+.. |...|.+++|+|++++|++++.|+.|++||++ .++++..+
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 202 (377)
T 3dwl_C 125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-- 202 (377)
T ss_dssp EECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--
T ss_pred EEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--
Confidence 9999997654344556666 88999999999999999999999999999985 24444444
Q ss_pred ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee---eec
Q 018858 144 GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI---SRS 220 (349)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~ 220 (349)
.|...|.+++|+| ++++|++++.||.|++||+++++.. ...
T Consensus 203 ~~~~~v~~~~~sp------------------------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 203 PSGGWVHAVGFSP------------------------------------SGNALAYAGHDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp CCSSSEEEEEECT------------------------------------TSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred cCCceEEEEEECC------------------------------------CCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence 5778899999998 7899999999999999999987652 112
Q ss_pred CCCCCCccceeeeeccccEEEEeeeeeecCce-----e----------------------------e---------eee-
Q 018858 221 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-----R----------------------------L---------HLD- 257 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------------------------~---------~~~- 257 (349)
.......+..++|+|+++++++.. .+....- . . ...
T Consensus 247 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (377)
T 3dwl_C 247 VKLSQLPLRSLLWANESAIVAAGY-NYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFR 325 (377)
T ss_dssp EECSSSCEEEEEEEETTEEEEEES-SSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------------
T ss_pred ecCCCCceEEEEEcCCCCEEEEEc-CCcEEEEEeCCCceEEEeeeccccccccccccccccccccccccccccccccccc
Confidence 223456788999999999988632 1110000 0 0 000
Q ss_pred ------------eeecCCCcceEEEEEeeecCCcc---EEEEeeCCCeEEEEec
Q 018858 258 ------------YSVGGHTAAASCVAFSMFGERGK---YLISGGNDKLVKVWDC 296 (349)
Q Consensus 258 ------------~~~~~h~~~i~~i~~~~~~~~~~---~l~s~~~d~~i~vwd~ 296 (349)
.....|...|+++.+.+ +++. .|+|++.||.|++||+
T Consensus 326 ~~~~~g~~~~~~~~~~~H~~~i~~~~~~~--~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 326 NMDLKGSSQSISSLPTVHQNMIATLRPYA--GTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------CCCSSSCSSCEEEEEEEE--EETTEEEEEEEEETTSEEEEECC
T ss_pred chhhccccccccccCccccceeEEEeccC--CCCCceEEEEeecCCCcEEEecC
Confidence 01123899999999773 3333 7999999999999985
No 88
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=254.17 Aligned_cols=256 Identities=13% Similarity=0.204 Sum_probs=197.6
Q ss_pred CCeeeeCCc------------eeeeEEEEecCCC--ceEEEeCCCCcEEEEECCCCcEE---------------------
Q 018858 7 KPRRLRGHK------------ATATCCIASRDRP--GFVASSGEDGCICWFDLRSKDVQ--------------------- 51 (349)
Q Consensus 7 ~~~~l~~h~------------~~i~~~~~~~~~~--~~l~t~~~dg~i~vwd~~~~~~~--------------------- 51 (349)
....+++|. +.|++++|+|+ + .+|++++.|+.|++||+.+++..
T Consensus 73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~-~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 151 (447)
T 3dw8_B 73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ-KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT 151 (447)
T ss_dssp EEEEEECCCCEEEGGGTEEECCCCCEEEECCC-CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred EecccccccccccccccccccCceEEEEEcCC-CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence 477889998 88999999998 5 78999999999999998764331
Q ss_pred ------------------EE-eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC-cccce----eeccCcccceE
Q 018858 52 ------------------LV-TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA-SWRPL----ESYNYNKEEIN 107 (349)
Q Consensus 52 ------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~----~~~~~~~~~v~ 107 (349)
.. ..+|...|.+++|+|++++|+++ .|+.|++||+++.. ....+ ..+..|...|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 230 (447)
T 3dw8_B 152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT 230 (447)
T ss_dssp CCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEE
T ss_pred eEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceE
Confidence 12 35799999999999999999998 79999999998422 11111 13556888999
Q ss_pred EEEEccCC-CEEEEEcCCCcEEEEEcCCceE----eceecccccc------------ceeEEEEccCCCCCCCCCCCCCC
Q 018858 108 QIVCNPKS-SFLACADDGGDVKIIDIRQHCL----YKSLRAGHSS------------ICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 108 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
+++|+|++ ++|++|+.||.|++||+++++. ...+. .|.. .|.+++|+|
T Consensus 231 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~-------------- 295 (447)
T 3dw8_B 231 AAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSH-------------- 295 (447)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECT--------------
T ss_pred EEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec-cCCCccccccccccCceEEEEEECC--------------
Confidence 99999998 9999999999999999998876 56666 6654 899999999
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-ceeeeecCCCCCCccceeeeeccccEEEEeeeeeec
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 249 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
++++|++++. +.|++||++. +
T Consensus 296 ----------------------~g~~l~~~~~-~~v~iwd~~~~~----------------------------------- 317 (447)
T 3dw8_B 296 ----------------------SGRYMMTRDY-LSVKVWDLNMEN----------------------------------- 317 (447)
T ss_dssp ----------------------TSSEEEEEES-SEEEEEETTCCS-----------------------------------
T ss_pred ----------------------CCCEEEEeeC-CeEEEEeCCCCc-----------------------------------
Confidence 8999999998 9999999986 3
Q ss_pred CceeeeeeeeecCCCc---------------ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccccc------
Q 018858 250 GGKRLHLDYSVGGHTA---------------AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN------ 308 (349)
Q Consensus 250 ~~~~~~~~~~~~~h~~---------------~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------ 308 (349)
.++..+.+|.. .+..++|+ |++++|++|+.||.|++||+.+++........
T Consensus 318 -----~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s---~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 389 (447)
T 3dw8_B 318 -----RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN---GSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPR 389 (447)
T ss_dssp -----SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC---TTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTT
T ss_pred -----cccceeeccccccccccccccccccccceEEEEC---CCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccc
Confidence 23344444432 13358999 89999999999999999999987543211000
Q ss_pred -----------------ceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 309 -----------------DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 309 -----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
........+...|..++|+| ++++|++++.++ +++|.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 390 TVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEE
T ss_pred cccCCccccccCCcccccccccccccCCceeEEEECC-CCCEEEEEecce-eeeec
Confidence 01111224566899999999 788888887776 77775
No 89
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.4e-34 Score=263.93 Aligned_cols=300 Identities=12% Similarity=0.099 Sum_probs=236.3
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++.++.+.+|..+|++++|+|+ +++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|+
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 122 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence 46678899999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
+||++++. .....+..|...+.+++|+| ++..|++++.||.|++||+++++....+...+...+.+++|+|.
T Consensus 123 vw~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----- 195 (814)
T 3mkq_A 123 LWNWENNW--ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL----- 195 (814)
T ss_dssp EEEGGGTS--EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS-----
T ss_pred EEECCCCc--eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC-----
Confidence 99998652 33455666788999999999 78999999999999999999887777766234488999999982
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
+++.+|++++.||.|++||+++++....... ....+..++|+|+++++++
T Consensus 196 -----------------------------~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 196 -----------------------------PDKPYMITASDDLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp -----------------------------TTCCEEEEECTTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSEEEE
T ss_pred -----------------------------CCCCEEEEEeCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEE
Confidence 2578999999999999999998876665543 3467899999999998885
Q ss_pred eeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCcc--EEEEeeCCCeEEEEecCCCcceecccc-cce-----
Q 018858 243 MEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGK--YLISGGNDKLVKVWDCSRFQGVQTSIN-NDL----- 310 (349)
Q Consensus 243 ~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~----- 310 (349)
.+ .++. ..........+..|...+.+++|+ |++. +++++ .|+.+.+|++..........+ ...
T Consensus 246 ~~-~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (814)
T 3mkq_A 246 GS-EDGTLKIWNSSTYKVEKTLNVGLERSWCIATH---PTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGG 320 (814)
T ss_dssp EE-TTSCEEEEETTTCSEEEEECCSSSSEEEEEEC---TTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECC
T ss_pred Ee-CCCeEEEEECCCCcEEEEeecCCCcEEEEEEc---cCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECc
Confidence 33 2222 222345566777888899999999 7876 45554 467788998875432211000 000
Q ss_pred ----------------------------eeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 311 ----------------------------LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 311 ----------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
......+...+.+++|+| +++++++++ |+.+.+|++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 321 KNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp TTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEET
T ss_pred ccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEEC
Confidence 011133455678888987 787888777 888999885
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.1e-35 Score=241.30 Aligned_cols=220 Identities=15% Similarity=0.134 Sum_probs=180.6
Q ss_pred CCeeeeCCceeeeEEEEecC-CCceEEEeCCCCcEEEEECCCC--cEEEEeecCCCCeEEEEEecC--CCEEEEEeCCCe
Q 018858 7 KPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGKE 81 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~ 81 (349)
.+..|++|.+.|++++|+|+ ++++|++|+.|++|++||++++ +....+.+|...|.+++|+|+ +.+|++++.|+.
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 46788999999999999753 3789999999999999999876 356778889999999999997 789999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccC-----------------CCEEEEEcCCCcEEEEEcCCc---eEecee
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-----------------SSFLACADDGGDVKIIDIRQH---CLYKSL 141 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~ 141 (349)
|++||++.+........+..|...+.+++|+|+ +++|++|+.|+.|++||++.. +.+..+
T Consensus 129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l 208 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL 208 (316)
T ss_dssp EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence 999999865433334556678889999999997 468999999999999999754 466778
Q ss_pred ccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC
Q 018858 142 RAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
. +|...|.+++|+|++.. ++.+|++++.||+|++|+++....
T Consensus 209 ~-~h~~~V~~v~~sp~~~~--------------------------------~~~~las~s~D~~v~iw~~~~~~~----- 250 (316)
T 3bg1_A 209 E-AHSDWVRDVAWAPSIGL--------------------------------PTSTIASCSQDGRVFIWTCDDASS----- 250 (316)
T ss_dssp B-CCSSCEEEEECCCCSSC--------------------------------SCCEEEEEETTCEEEEEECSSTTC-----
T ss_pred c-cCCCceEEEEecCCCCC--------------------------------CCceEEEEcCCCeEEEEEccCccc-----
Confidence 8 89999999999993100 137899999999999999875210
Q ss_pred CCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
.......+..|...|.+++|+ |++++|++++.|+.|++|+...
T Consensus 251 -------------------------------~~~~~~~~~~~~~~v~~v~~s---p~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 251 -------------------------------NTWSPKLLHKFNDVVWHVSWS---ITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp -------------------------------CCCBCCEEEECSSCEEEEEEC---TTTCCEEEEESSSCEEEEEECT
T ss_pred -------------------------------cchhhhhhhcCCCcEEEEEEc---CCCCEEEEEcCCCeEEEEEECC
Confidence 001112334578899999999 8999999999999999999764
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-34 Score=242.44 Aligned_cols=251 Identities=12% Similarity=0.061 Sum_probs=196.4
Q ss_pred CCCCeeeeC-----CceeeeEEEEecCC---CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEec-CCCEEEE
Q 018858 5 EAKPRRLRG-----HKATATCCIASRDR---PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS-GNEDIIY 75 (349)
Q Consensus 5 ~~~~~~l~~-----h~~~i~~~~~~~~~---~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 75 (349)
++.++.++. |...|++++|+|+. +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++
T Consensus 54 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s 133 (366)
T 3k26_A 54 QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLS 133 (366)
T ss_dssp GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEE
T ss_pred CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEE
Confidence 344555554 55789999999973 35899999999999999999999999999999999999999 9999999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc-----------
Q 018858 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG----------- 144 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------- 144 (349)
++.||.|++||+++++....+..+..|...|.+++|+|++++|++++.||.|++||+++++....+. .
T Consensus 134 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~ 212 (366)
T 3k26_A 134 VSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK-ESYDYNPNKTNR 212 (366)
T ss_dssp EETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHH-HHHTCCGGGCSS
T ss_pred EeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccc-eeEEecCCCCcc
Confidence 9999999999999775444444346788999999999999999999999999999999877655444 2
Q ss_pred -----------------cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 145 -----------------HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 145 -----------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
|...|.+++|+ +++|++++.||.|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------------------------------------~~~l~~~~~d~~i~ 254 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWL--------------------------------------GDLILSKSCENAIV 254 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEE--------------------------------------TTEEEEECSSSEEE
T ss_pred cccceeeccCccccccCCcceEEEEEEc--------------------------------------CCEEEEEecCCEEE
Confidence 45555555554 36899999999999
Q ss_pred EEEccCceee-------------eecCCCCCCccceeeeecc--ccEEEEeeeeeecC----ceee----eeeeeecCC-
Q 018858 208 VINIESELNI-------------SRSKSTTKPLKGSQSTSKV--NIRDAEMEILDQSG----GKRL----HLDYSVGGH- 263 (349)
Q Consensus 208 i~d~~~~~~~-------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~----~~~~~~~~h- 263 (349)
+||+++.... ..........+..++|+|+ ++++++. ..++.+ .... .....+.+|
T Consensus 255 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 255 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG-NQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp EEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE-CTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred EEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE-ecCCcEEEEECCCCCCccccceEEcccc
Confidence 9999875431 1111223456888999999 9999853 222221 1111 133456666
Q ss_pred -CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 264 -TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 264 -~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
...|++++|+ |++++|++++.||.|++||+.+
T Consensus 334 ~~~~v~~~~~s---~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 334 CGAAIRQTSFS---RDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CCSCEEEEEEC---TTSSEEEEEETTSEEEEEEC--
T ss_pred cCCceEEEEeC---CCCCeEEEEeCCCEEEEEEecC
Confidence 7899999999 8999999999999999999863
No 92
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.1e-34 Score=235.89 Aligned_cols=250 Identities=20% Similarity=0.232 Sum_probs=206.3
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
.+.+.+++|...|.+++|+|+ +++|++++.|+.|++|+............+...+..+.+++++++|++++.|+.+++|
T Consensus 77 ~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 77 IPQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eeeEEEeCCCCCEEEEEECCC-CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEE
Confidence 356788999999999999998 8999999999999999999998888888888999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCC--CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|+.... ........|...+..++|++++ .++++++.|+.|++||+++++.+..+. +|...|.+++|+|
T Consensus 156 d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~------- 225 (340)
T 4aow_A 156 NTLGVC--KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSP------- 225 (340)
T ss_dssp CTTSCE--EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECT-------
T ss_pred EeCCCc--eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECC-------
Confidence 987532 3334456678899999998865 578899999999999999999999998 8999999999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++++|++|+.||.|++||+++.+........ ..+..+.++|++.+++..
T Consensus 226 -----------------------------~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~ 274 (340)
T 4aow_A 226 -----------------------------DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAA 274 (340)
T ss_dssp -----------------------------TSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSEEEEE
T ss_pred -----------------------------CCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCCceeecc
Confidence 7999999999999999999988777655443 568899999999887753
Q ss_pred ee-----eeecCceee------eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 244 EI-----LDQSGGKRL------HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 244 ~~-----~~~~~~~~~------~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.. ++....... .......+|...|++++|+ |++++|++|+.||.|+|||+++++
T Consensus 275 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 275 TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS---ADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC---TTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC---CCCCEEEEEeCCCEEEEEeCCCcC
Confidence 21 111111110 1112345688899999999 899999999999999999999873
No 93
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-34 Score=247.24 Aligned_cols=249 Identities=19% Similarity=0.200 Sum_probs=196.9
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---EEEEeec-----------------------------------
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDV----------------------------------- 56 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~----------------------------------- 56 (349)
..++.+++|+|+ +++|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 358899999999 7766665 47899999999988 5555543
Q ss_pred -------------------CCCCeEEEEEecCCCEE-EEEeCCCeEEEEEcc--CCCcccceeeccCcccceEEEEEccC
Q 018858 57 -------------------GNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVH--MPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 57 -------------------~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
|...|.+++|+|++++| ++++.||.|++||+. +++....+.. ..+...|.+++|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-FCFSKRPNAISIAED 160 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-EECSSCEEEEEECTT
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-ccCCCCceEEEEcCC
Confidence 23369999999999996 889999999999998 6654444432 134578999999999
Q ss_pred CCEEEEEcCCCcEEEEEcCCceEec----eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccccc
Q 018858 115 SSFLACADDGGDVKIIDIRQHCLYK----SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADML 190 (349)
Q Consensus 115 ~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
+++|++++.+|.|++|++.+++... .+. +|...|.+++|+|
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp---------------------------------- 205 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVHLIK---------------------------------- 205 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEEEEE----------------------------------
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeee-cccCceEEEEEcC----------------------------------
Confidence 9999999999999999998876554 666 7889999999999
Q ss_pred CCC---CcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeee-ecCCCcc
Q 018858 191 DKT---NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS-VGGHTAA 266 (349)
Q Consensus 191 ~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~ 266 (349)
+ +++|++++.|+.|++||++++ ..+.. +.+|...
T Consensus 206 --~~~~~~~l~s~~~d~~i~vwd~~~~----------------------------------------~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 206 --DSDGHQFIITSDRDEHIKISHYPQC----------------------------------------FIVDKWLFGHKHF 243 (450)
T ss_dssp --CTTSCEEEEEEETTSCEEEEEESCT----------------------------------------TCEEEECCCCSSC
T ss_pred --CCCCCcEEEEEcCCCcEEEEECCCC----------------------------------------ceeeeeecCCCCc
Confidence 7 889999999999999999864 22333 5579999
Q ss_pred eEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee----------------eccccccceEEEEeecCC
Q 018858 267 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI----------------KNINLNKKVNWLCTTPTE 330 (349)
Q Consensus 267 i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~----------------~~~~~~~~v~~~~~~~~~ 330 (349)
|++++|+ ++++|++++.|+.|++||+.+++............ ........|..++|+| +
T Consensus 244 v~~~~~s----d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~ 318 (450)
T 2vdu_B 244 VSSICCG----KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-N 318 (450)
T ss_dssp EEEEEEC----STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-S
T ss_pred eEEEEEC----CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-C
Confidence 9999996 78999999999999999999985432211000000 0002345689999988 8
Q ss_pred CCcEEEee-CCCeEEEeeC
Q 018858 331 SENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 331 ~~~l~~~~-~dg~i~iw~~ 348 (349)
+++|++++ .|+.|++|++
T Consensus 319 ~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSEEEEEETTCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEe
Confidence 88999998 8999999997
No 94
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-35 Score=250.14 Aligned_cols=290 Identities=11% Similarity=0.119 Sum_probs=213.1
Q ss_pred EecCCCceEEEeCCCCcEEEEECCCCcEEEEe-ecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccC---CCccccee
Q 018858 23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHM---PASWRPLE 97 (349)
Q Consensus 23 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~ 97 (349)
|+|+ +..+++++ .|+ .+++.+..+ .+|...|.+++|+| ++++|++|+.||.|++||+.+ +.......
T Consensus 35 f~~~-~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 35 FGPI-QEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GCCC-CCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred cCCc-cccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4555 55555544 488 457788888 88999999999999 999999999999999999976 33222222
Q ss_pred eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC---CceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR---QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
.+ .|...|.+++|+|++++|++++.||.|++||++ +++....+. .+ .+..+.|+|++
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~--~i~~~~~~~~~---------------- 166 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN-CE--CIRKINLKNFG---------------- 166 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE-EE--EEEEEEGGGGS----------------
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc-cc--eeEEEEccCcc----------------
Confidence 32 378899999999999999999999999999995 555555554 33 56677766521
Q ss_pred CCceeEEee--cCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-CCCccceeeeeccccEEEEeeeeeec--
Q 018858 175 NPAFVHAIA--IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSKVNIRDAEMEILDQS-- 249 (349)
Q Consensus 175 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (349)
....+.++. +.+ ++.+|++++.||.|++||+++++........ ....+.+++|+|+++++++ +..++.
T Consensus 167 ~~~~~~~~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~dg~i~ 239 (437)
T 3gre_A 167 KNEYAVRMRAFVNE------EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLIL-GTTRGIID 239 (437)
T ss_dssp SCCCEEEEEEEECS------SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEE-EETTSCEE
T ss_pred cccCceEEEEEEcC------CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEE-EcCCCeEE
Confidence 122233333 223 7899999999999999999998877766654 5678999999999999985 333322
Q ss_pred --Cceeeeeeeeec-CCCcceEEEEEee-ecCCccEEEEeeCCCeEEEEecCCCcceeccccc--ce---ee--------
Q 018858 250 --GGKRLHLDYSVG-GHTAAASCVAFSM-FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN--DL---LI-------- 312 (349)
Q Consensus 250 --~~~~~~~~~~~~-~h~~~i~~i~~~~-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~---~~-------- 312 (349)
......++..+. .|...|+++.++| +++++.+|++++.|+.|++||+++++........ .+ ..
T Consensus 240 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (437)
T 3gre_A 240 IWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE 319 (437)
T ss_dssp EEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGG
T ss_pred EEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccc
Confidence 122334555554 6778999997774 3467889999999999999999987543221100 00 00
Q ss_pred --eccc--cccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 313 --KNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 313 --~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.+ |...|++++|+ ++++|++++.||.|++||+.
T Consensus 320 ~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 320 ELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp GCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETT
T ss_pred cceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECC
Confidence 1122 78889999997 55799999999999999974
No 95
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-35 Score=243.83 Aligned_cols=233 Identities=15% Similarity=0.137 Sum_probs=181.6
Q ss_pred EecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC------cccce
Q 018858 23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA------SWRPL 96 (349)
Q Consensus 23 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~ 96 (349)
+.++ +.+|++|+.||.|++||+.+++.+..+. ...|.++.++|+ +++++.|+.|++|+..... ....+
T Consensus 44 ~~~d-~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 44 MYYD-KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSEE-EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hcCC-CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 3445 7899999999999999999998887776 456778888887 9999999999999776311 11212
Q ss_pred eec-cCcccceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccc
Q 018858 97 ESY-NYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQC 173 (349)
Q Consensus 97 ~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
..+ ..|...|.+++|+| +++++++++.||.|++||+++++........+...+.+++|+|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p----------------- 180 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK----------------- 180 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-----------------
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-----------------
Confidence 222 24557899999999 9999999999999999999999887666424566799999999
Q ss_pred cCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCcee
Q 018858 174 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR 253 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
++.+|++|+.||.|++||++++
T Consensus 181 -------------------dg~~lasg~~dg~i~iwd~~~~--------------------------------------- 202 (343)
T 3lrv_A 181 -------------------DSLLLALYSPDGILDVYNLSSP--------------------------------------- 202 (343)
T ss_dssp -------------------TSCEEEEECTTSCEEEEESSCT---------------------------------------
T ss_pred -------------------CCCEEEEEcCCCEEEEEECCCC---------------------------------------
Confidence 8999999999999999999975
Q ss_pred eeee-eeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceE--EEEeecC
Q 018858 254 LHLD-YSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN--WLCTTPT 329 (349)
Q Consensus 254 ~~~~-~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~ 329 (349)
... ..+.. |...|++++|+ |++.+|++++ |+.|++||+++.+... .+..+..|...+. +++|+|
T Consensus 203 -~~~~~~~~~~h~~~v~~l~fs---~~g~~l~s~~-~~~v~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~- 270 (343)
T 3lrv_A 203 -DQASSRFPVDEEAKIKEVKFA---DNGYWMVVEC-DQTVVCFDLRKDVGTL------AYPTYTIPEFKTGTVTYDIDD- 270 (343)
T ss_dssp -TSCCEECCCCTTSCEEEEEEC---TTSSEEEEEE-SSBEEEEETTSSTTCB------SSCCCBC-----CCEEEEECT-
T ss_pred -CCCccEEeccCCCCEEEEEEe---CCCCEEEEEe-CCeEEEEEcCCCCcce------eecccccccccccceEEEECC-
Confidence 222 45566 99999999999 8999999999 5599999999874321 1111222334444 699988
Q ss_pred CCCcEEEeeC-CCeEEEeeC
Q 018858 330 ESENLVVCDT-SKVVKVYSI 348 (349)
Q Consensus 330 ~~~~l~~~~~-dg~i~iw~~ 348 (349)
++++|++++. |+.|++|++
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEEE
Confidence 8889999988 999999986
No 96
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.5e-34 Score=241.89 Aligned_cols=251 Identities=13% Similarity=0.080 Sum_probs=207.3
Q ss_pred CCeeeeCCceeeeEEEEecC---CC---ceEEEeCCCCcEEEEECCCCcE-----EEEeecC-----CCCeEEEEEe---
Q 018858 7 KPRRLRGHKATATCCIASRD---RP---GFVASSGEDGCICWFDLRSKDV-----QLVTDVG-----NGPVTSLCFK--- 67 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~---~~---~~l~t~~~dg~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~--- 67 (349)
.+..+.+|...|++++|+|+ ++ ++|++++.||.|++||+.+++. ...+..| ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 68889999999999999996 36 7999999999999999998876 7888888 5899999999
Q ss_pred -cCCCE-EEEEeCCCeEEEEEccC------CCccc--ceeec-------cCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 68 -SGNED-IIYVSSGKEVKSFDVHM------PASWR--PLESY-------NYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 68 -~~~~~-l~~~~~dg~i~iwd~~~------~~~~~--~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
|++++ |++++.||.|++||+++ ++... ....+ ..|...+.+++|+|++ +|++++.||.|++|
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS 212 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence 99999 99999999999999987 44333 00023 3467889999999999 99999999999999
Q ss_pred EcCCceEeceeccc---c---ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC-
Q 018858 131 DIRQHCLYKSLRAG---H---SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD- 203 (349)
Q Consensus 131 d~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d- 203 (349)
|+++++.+..+. . | ...+.+++|+| ++++|++++.|
T Consensus 213 d~~~~~~~~~~~-~~~~h~~~~~~i~~i~~~~------------------------------------~~~~l~~~~~d~ 255 (397)
T 1sq9_A 213 ELSTLRPLYNFE-SQHSMINNSNSIRSVKFSP------------------------------------QGSLLAIAHDSN 255 (397)
T ss_dssp ETTTTEEEEEEE-CCC---CCCCCEEEEEECS------------------------------------STTEEEEEEEET
T ss_pred ECCCCceeEEEe-ccccccccCCccceEEECC------------------------------------CCCEEEEEecCC
Confidence 999999998888 7 7 88999999999 78999999999
Q ss_pred --CeEEEEEccCceeeeecCCC------------CCCccceeeeeccccEEEEeeeeee----cCceeeeeeeeec----
Q 018858 204 --GVVDVINIESELNISRSKST------------TKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSVG---- 261 (349)
Q Consensus 204 --g~i~i~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---- 261 (349)
|.|++||+++++.......+ ....+..++|+|+++++++.+ .++ +.....+.+..+.
T Consensus 256 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 334 (397)
T 1sq9_A 256 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERITTLNMHCD 334 (397)
T ss_dssp TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCGG
T ss_pred CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecccC
Confidence 99999999988776665542 567889999999999998633 222 1222334555666
Q ss_pred --CC---------------CcceEEEEEeeecCCc----------cEEEEeeCCCeEEEEecCCC
Q 018858 262 --GH---------------TAAASCVAFSMFGERG----------KYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 262 --~h---------------~~~i~~i~~~~~~~~~----------~~l~s~~~d~~i~vwd~~~~ 299 (349)
+| ...|++++|+ |++ ++|++++.||.|++|+++++
T Consensus 335 ~~~~~~~~~~g~~~~~~~~~~~v~~~~~~---~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 335 DIEIEEDILAVDEHGDSLAEPGVFDVKFL---KKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp GCSSGGGCCCBCTTSCBCSSCCEEEEEEE---CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccchhhhhccccccccccCCceeEEEec---cccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 66 8999999999 887 79999999999999999875
No 97
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.1e-33 Score=236.52 Aligned_cols=255 Identities=9% Similarity=0.054 Sum_probs=182.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEE-EEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII-YVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i 82 (349)
+.+.++.++.|.+.|++++|+|+ +++|++|+.++ +++||.++++.......+ .+..+++.++++.++ +++.|+.|
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp -----------CCCCCEEEECTT-SSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEE
T ss_pred ccCCccccccCCCceEEEEECCC-CCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEE
Confidence 34566778899999999999998 89999998775 789999877765544432 577788888888874 56778999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
++||+.+++... .+. +...|.+++++++. ++++ .++.|++||+.++ +.+..+. . +...+++++
T Consensus 84 ~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~-~---~~~~~~~s~----- 147 (355)
T 3vu4_A 84 HIWDDVKKQDVS---RIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDI-R---FGGVCEFSN----- 147 (355)
T ss_dssp EEEETTTTEEEE---EEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCE-E---EEEEEEEET-----
T ss_pred EEEECCCCcEEE---EEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEec-c---CCceEEEEc-----
Confidence 999999875443 333 35689999998763 4443 3678999999988 7776666 3 333444544
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE--EcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV--AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
.++++ |+.||.|++||++++......... ++
T Consensus 148 ---------------------------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~-----------~~--- 180 (355)
T 3vu4_A 148 ---------------------------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQG-----------VQ--- 180 (355)
T ss_dssp ---------------------------------TEEEEEESSCTTCEEEEECCC--------------------------
T ss_pred ---------------------------------cEEEEeCCCcCcEEEEEECCCCCcccccccc-----------cc---
Confidence 34555 689999999999874311100000 00
Q ss_pred EEEeeeeeecCceeeee-eeeecCCCcceEEEEEeeecCCccEEEEeeCCCe-EEEEecCCCcceecccccceeeecc-c
Q 018858 240 DAEMEILDQSGGKRLHL-DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNI-N 316 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~-~ 316 (349)
.....+ ...+.+|...|++++|+ |++++|++|+.|++ |++||++++ ..+..+. +
T Consensus 181 -----------~~~~~p~~~~~~~h~~~v~~~~~s---~~g~~l~s~s~d~~~v~iwd~~~~---------~~~~~~~~g 237 (355)
T 3vu4_A 181 -----------QKAILGKGVLIKAHTNPIKMVRLN---RKSDMVATCSQDGTIIRVFKTEDG---------VLVREFRRG 237 (355)
T ss_dssp -----------------CCEEECCCSSCEEEEEEC---TTSSEEEEEETTCSEEEEEETTTC---------CEEEEEECT
T ss_pred -----------ccccCcccEEEEccCCceEEEEEC---CCCCEEEEEeCCCCEEEEEECCCC---------cEEEEEEcC
Confidence 001122 56788999999999999 89999999999998 999999987 5555565 5
Q ss_pred -cccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 317 -LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 317 -~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|...|++++|+| ++++|++++.|+.|++||++
T Consensus 238 ~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 238 LDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp TCCSCEEEEEECT-TSCEEEEEETTCEEEEEESS
T ss_pred CCCCcEEEEEECC-CCCEEEEEECCCEEEEEEcc
Confidence 999999999988 88899999999999999974
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=237.68 Aligned_cols=281 Identities=15% Similarity=0.081 Sum_probs=186.5
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecC---CCEEEEEeCCCeEEEEEccC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG---NEDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~ 89 (349)
+|...|.+++|+|+++.+|++++.||.|++||+.+++....+. +...+.++.++|. +.++++++.++.|++||+++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 6999999999999658899999999999999999998887777 7788999999884 44999999999999999987
Q ss_pred CCcccceeeccCcccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCce-Eecee---------------ccccccceeEE
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHC-LYKSL---------------RAGHSSICSSV 152 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~~v~~~ 152 (349)
++ .+..+..|...|.+++|+|+++ .|++++.||.|++||++++. .+..+ . .|...|.++
T Consensus 176 ~~---~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 251 (408)
T 4a11_B 176 GS---CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT-AHNGKVNGL 251 (408)
T ss_dssp SC---CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC-SCSSCEEEE
T ss_pred cc---eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc-cccCceeEE
Confidence 64 3455666889999999999998 58899999999999998654 22222 3 567778888
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC----CCcc
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT----KPLK 228 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~ 228 (349)
+|+| ++++|++++.||.|++||+++++......... ....
T Consensus 252 ~~~~------------------------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 295 (408)
T 4a11_B 252 CFTS------------------------------------DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL 295 (408)
T ss_dssp EECT------------------------------------TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCC
T ss_pred EEcC------------------------------------CCCEEEEecCCCeEEEEECCCCccceeccccccccccccc
Confidence 8888 89999999999999999999876544322211 1111
Q ss_pred -ceeeeeccccEEEEeee--eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecc
Q 018858 229 -GSQSTSKVNIRDAEMEI--LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 229 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 305 (349)
...........++.... ...........+..+.+|...|++++|+ |++++|++++.||.|++||+.+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~dg~i~iw~~~~~~~---- 368 (408)
T 4a11_B 296 KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQ---SNFQELYSGSRDCNILAWVPSLYEP---- 368 (408)
T ss_dssp CCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEEEECC-------
T ss_pred eeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEc---CCCCEEEEECCCCeEEEEeCCCCCc----
Confidence 11122222333332111 1111122345667788999999999999 8999999999999999999999742
Q ss_pred cccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 306 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.....+. ....+.+.....+.+++.|+.+++|+.+
T Consensus 369 -----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 369 -----VPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp --------------------------------------------
T ss_pred -----cCCCCceE---eccccccccceeecccCccCceeecCCc
Confidence 22221111 1123344444466777889999999863
No 99
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-35 Score=254.56 Aligned_cols=247 Identities=11% Similarity=0.045 Sum_probs=188.0
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-EEEEeecCCCCeEEE--EEecCC-CEEEEEeCCCeE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-VQLVTDVGNGPVTSL--CFKSGN-EDIIYVSSGKEV 82 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i 82 (349)
....+.+|...|++++|+++ ..|++|+.||+|++||+++++ +...+.+|...|.++ +|+|++ .+|++++.|++|
T Consensus 258 p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred ceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 34578899999999999985 489999999999999998764 456688999999999 578887 899999999999
Q ss_pred EEEEccCCCcccceeeccCcc--cceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNK--EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
++||+++++.... +.+|. ..+.+++|+|+++.+++++.|+.|++||++++.++..+. +|.+.|++++|+|
T Consensus 336 klWD~~~~~~~~~---~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp---- 407 (524)
T 2j04_B 336 YIFNPKDIATTKT---TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSR---- 407 (524)
T ss_dssp EEECGGGHHHHCE---EEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCS----
T ss_pred EEEECCCCCcccc---cccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCC----
Confidence 9999986543322 22332 247899999999999999999999999999988878888 8999999999999
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC----CCCCccceeeeecc
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS----TTKPLKGSQSTSKV 236 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~ 236 (349)
++++|++|+.||+|++||+... ....... .....+..++|+|+
T Consensus 408 --------------------------------~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~ 454 (524)
T 2j04_B 408 --------------------------------LHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIK 454 (524)
T ss_dssp --------------------------------SCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSS
T ss_pred --------------------------------CCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCC
Confidence 7899999999999999998653 1111110 11123568899999
Q ss_pred ccEEEEeeeeeecCc-eeeeeeeeecCCCcceEEEEEeeecCCc---cEEEEeeCCCeEEEEecCCC
Q 018858 237 NIRDAEMEILDQSGG-KRLHLDYSVGGHTAAASCVAFSMFGERG---KYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~i~~~~~~~~~---~~l~s~~~d~~i~vwd~~~~ 299 (349)
+..+........... ........+.+|...|++++|+ |++ .++++|+.||.|+||++...
T Consensus 455 g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs---p~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 455 DDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN---ETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp SCEEEECCCCCCCC-------------CCCSCCCEEEC---CSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCeEEccCCceecccccCCcceeeecCCCceEEEEECC---CCCCccHHHHhhccCceEEEEEcccc
Confidence 986643221111111 1244567788999999999999 674 59999999999999998763
No 100
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.8e-34 Score=244.48 Aligned_cols=281 Identities=9% Similarity=0.026 Sum_probs=172.7
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE-----EEeecCCCCeEEEEEec--------CCCEEEEEeCCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-----LVTDVGNGPVTSLCFKS--------GNEDIIYVSSGK 80 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg 80 (349)
|...+....+.++ +.+|++++.|++|++||.++++.. ..+.+|...|.+++|+| ++++|++++.|+
T Consensus 88 ~~~~~~~~~~~~~-~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 88 HDGDGNVNSSPVY-SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ---------CCEE-EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred cCCCcceeecCCC-CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 3333333344444 678999999999999999887653 34578999999999998 789999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccc----eeEEEEc
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI----CSSVQFI 155 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----v~~~~~~ 155 (349)
+|+|||++++. .+.....|...+.+++|+|++ .+|++++.|+.|++||+++++...... .+... +....+.
T Consensus 167 tv~~Wd~~~~~---~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~-~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 167 TLIIWRLTDEG---PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS-QTELVKNPWLLTLNTL 242 (393)
T ss_dssp EEEEEEEETTE---EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCCCSEEEESG
T ss_pred eEEEEECCCCc---eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc-ccCCcccceEEecccc
Confidence 99999998653 233344467899999999987 589999999999999999876654433 22111 1111111
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
+... .....-....+.++.+. .++++.+++++.|+.+++||+...+....+... ...+..+.+.|
T Consensus 243 ~~~~---------~~~~~~~~~~v~~v~~~-----~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~-~~~~~~~~~~~ 307 (393)
T 4gq1_A 243 PLVN---------TCHSSGIASSLANVRWI-----GSDGSGILAMCKSGAWLRWNLFANNDYNEISDS-TMKLGPKNLLP 307 (393)
T ss_dssp GGC---------------CCSSSCSEEEEE-----TTTTCEEEEECTTSEEEEEEC--------------------CCSC
T ss_pred ccee---------eeecccccccceeeeee-----cCCCCEEEEEeCCCCEEEEECccCCCCceEeee-cCccccEEEcc
Confidence 1000 00000111223344433 128999999999999999999875433322211 12222333333
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
+.+. ...+...+. ..++|. .++.++++|+.||.|++||+.++ .......
T Consensus 308 ~~~~--------------------~~~~~~~~~-~~~~~~-~~~~~~~sgs~Dg~V~lwd~~~~---------~~~~~~~ 356 (393)
T 4gq1_A 308 NVQG--------------------ISLFPSLLG-ACPHPR-YMDYFATAHSQHGLIQLINTYEK---------DSNSIPI 356 (393)
T ss_dssp SEEE--------------------ECSSCCSSC-CEECSS-CTTEEEEEETTTTEEEEEETTCT---------TCCEEEE
T ss_pred cccc--------------------ccccCccee-EEEccC-CCCEEEEEECCCCEEEEEECCCC---------cEEEEec
Confidence 3321 122222333 334421 35567788899999999999987 4555667
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.|...|.+++|+| +|++|++++.|| +.+|+
T Consensus 357 ~~~~~V~svafsp-dG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 357 QLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp ECSSCEEEEEECT-TSSEEEEEESSE-EEEEE
T ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEE
Confidence 7889999999998 899999998776 44554
No 101
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-33 Score=236.33 Aligned_cols=203 Identities=13% Similarity=0.129 Sum_probs=168.4
Q ss_pred CceeeeEEEEecCCCceEE--EeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 14 HKATATCCIASRDRPGFVA--SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~--t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
+...+.+++|+|+ +++++ +++.|++|+|||+++++.+..+. |...|.+++|+|+|+++++++.+ .+.+|+..+++
T Consensus 132 ~~~~~~~v~fSpD-g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISRE-GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTT-SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCC-CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 4456889999999 78765 55679999999999999988886 77889999999999999999854 57777776654
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCC----cEEEEEcCCceE----eceeccccccceeEEEEccCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGG----DVKIIDIRQHCL----YKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
.. .......|...+.+++|+|+++++++++.++ .+++|++..... ...+. +|...|++++|+|
T Consensus 209 ~~-~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Sp------- 279 (365)
T 4h5i_A 209 CI-ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDM------- 279 (365)
T ss_dssp EE-EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECT-------
T ss_pred ce-eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-CCCCCeEeEEECC-------
Confidence 32 2233445778899999999999999998877 588899876543 33455 7888999999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++++||+|+.|+.|+|||++++
T Consensus 280 -----------------------------dg~~lasgs~D~~V~iwd~~~~----------------------------- 301 (365)
T 4h5i_A 280 -----------------------------KGELAVLASNDNSIALVKLKDL----------------------------- 301 (365)
T ss_dssp -----------------------------TSCEEEEEETTSCEEEEETTTT-----------------------------
T ss_pred -----------------------------CCCceEEEcCCCEEEEEECCCC-----------------------------
Confidence 8999999999999999999975
Q ss_pred eeeeecCceeeeeeee-ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 244 EILDQSGGKRLHLDYS-VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+++.. +.+|...|++++|+ |||++|++||.|++|+|||++...
T Consensus 302 -----------~~~~~~~~gH~~~V~~v~fS---pdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 302 -----------SMSKIFKQAHSFAITEVTIS---PDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp -----------EEEEEETTSSSSCEEEEEEC---TTSCEEEEEETTSEEEEEECCTTT
T ss_pred -----------cEEEEecCcccCCEEEEEEC---CCCCEEEEEeCCCeEEEEEcCCCC
Confidence 44444 57899999999999 999999999999999999997653
No 102
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-33 Score=239.61 Aligned_cols=272 Identities=14% Similarity=0.065 Sum_probs=201.4
Q ss_pred eeCCceeeeEEEEecCCCceE-EEeCCCCcEEEEECC--CCcEEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 11 LRGHKATATCCIASRDRPGFV-ASSGEDGCICWFDLR--SKDVQLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l-~t~~~dg~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
..+|.+.|++++|+|+ +++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|++++|++++.+|.|++|
T Consensus 98 ~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp --CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 3467788999999999 7775 899999999999999 888877776 577899999999999999999999999999
Q ss_pred EccCCCccc-ceeeccCcccceEEEEEccC---CCEEEEEcCCCcEEEEEcCCceEece-eccccccceeEEEEccCCCC
Q 018858 86 DVHMPASWR-PLESYNYNKEEINQIVCNPK---SSFLACADDGGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 86 d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 160 (349)
++.+++... ....+.+|...|++++|+|+ +++|++++.|+.|++||+++++.+.. +. +|...|.+++|+ +
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~s-d--- 251 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF-GHKHFVSSICCG-K--- 251 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC-CCSSCEEEEEEC-S---
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec-CCCCceEEEEEC-C---
Confidence 998765443 44456678899999999999 99999999999999999998887776 44 789999999997 4
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
+++|++++.|+.|++||+++++......... .+..+.+.....
T Consensus 252 ---------------------------------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~-- 294 (450)
T 2vdu_B 252 ---------------------------------DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNS--LIKPYLNDQHLA-- 294 (450)
T ss_dssp ---------------------------------TTEEEEEESSSEEEEEETTTCCEEEEEECHH--HHGGGCCTTSBC--
T ss_pred ---------------------------------CCEEEEEeCCCeEEEEECCCCcEeeeecchh--hhhhhhhhcccc--
Confidence 6899999999999999999875544332110 000000000000
Q ss_pred EEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEec--CCCcceecccccceeeecccc
Q 018858 241 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDC--SRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~ 317 (349)
... ............|.++.|+ |++++|++++ .|+.|++|++ ...... ..+..+..|
T Consensus 295 ----------~~~-~~~~~~~~~~~~v~~i~~~---~~~~~l~~~~~~d~~i~iw~~~~~~~~~l------~~~~~~~~~ 354 (450)
T 2vdu_B 295 ----------PPR-FQNENNDIIEFAVSKIIKS---KNLPFVAFFVEATKCIIILEMSEKQKGDL------ALKQIITFP 354 (450)
T ss_dssp ---------------------CBCCCEEEEEEC---SSSSEEEEEETTCSEEEEEEECSSSTTCE------EEEEEEECS
T ss_pred ----------ccc-ccccccccceEEEEEEEEe---CCCCEEEEEECCCCeEEEEEeccCCCCce------eeccEeccC
Confidence 000 0000011234578999999 8999999998 8999999999 433111 233445556
Q ss_pred ccceEEEEeecCCCCcEEEe-eC------CCeEEEeeC
Q 018858 318 NKKVNWLCTTPTESENLVVC-DT------SKVVKVYSI 348 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~-~~------dg~i~iw~~ 348 (349)
..|.+++|+| ++ +++++ +. +..|.+|.+
T Consensus 355 -~~v~~~~~~~-~~-~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 355 -YNVISLSAHN-DE-FQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp -SCEEEEEEET-TE-EEEEECCTTCCSSCCCSEEEEEE
T ss_pred -CceEEEEecC-Cc-EEEEEecccCCCCCCcceEEEEE
Confidence 7899999988 54 45554 32 456788864
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-34 Score=242.68 Aligned_cols=237 Identities=13% Similarity=0.101 Sum_probs=184.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEE-----------------E----------EECCCCcEEEEee-cCCCCeEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCIC-----------------W----------FDLRSKDVQLVTD-VGNGPVTSL 64 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~-----------------v----------wd~~~~~~~~~~~-~~~~~v~~~ 64 (349)
.-...|.+++|+|| |+++||++.|++|+ + |++.+++....+. .|...|.++
T Consensus 13 ~~~~~v~sv~~SpD-G~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~v 91 (588)
T 2j04_A 13 EFEDWKNNLTWARD-GTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVC 91 (588)
T ss_dssp CCSSSSCCEEECTT-SCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEE
T ss_pred HhhccEEEEEECCC-CCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEE
Confidence 44577889999998 88999999998884 1 2222222111122 357789999
Q ss_pred EEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCccc-----ceEEEEEccCCCEEEEEcCCCcEEEEEcCCce---
Q 018858 65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKE-----EINQIVCNPKSSFLACADDGGDVKIIDIRQHC--- 136 (349)
Q Consensus 65 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--- 136 (349)
+|+|+|++||+++.||.|++||.+. .+..+. |.. .+.+++|+|+|++||+|+.||.|++||+.+++
T Consensus 92 awSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~ 165 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT 165 (588)
T ss_dssp EECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc
Confidence 9999999999999999999999642 344444 443 59999999999999999999999999999875
Q ss_pred ----Eeceec---cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEE
Q 018858 137 ----LYKSLR---AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 209 (349)
Q Consensus 137 ----~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 209 (349)
.+..++ .+|...|.+++|+| ++ +++++.|+.|++|
T Consensus 166 ~~~i~l~ti~~~~~gh~~~V~sVawSP------------------------------------dg--Laass~D~tVrlW 207 (588)
T 2j04_A 166 PEFYFESSIRLSDAGSKDWVTHIVWYE------------------------------------DV--LVAALSNNSVFSM 207 (588)
T ss_dssp CCCEEEEEEECSCTTCCCCEEEEEEET------------------------------------TE--EEEEETTCCEEEE
T ss_pred ccceeeeeeecccccccccEEEEEEcC------------------------------------Cc--EEEEeCCCeEEEE
Confidence 245552 26778999999999 67 7888899999999
Q ss_pred EccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee-cCCCcceEEEEEeeecCCccEEEEeeCC
Q 018858 210 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGND 288 (349)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~i~~~~~~~~~~~l~s~~~d 288 (349)
|+.++.. .....++ .+|...|.+++|+ +++||+++ +
T Consensus 208 d~~~~~~-------------------------------------~~~~~tL~~~h~~~V~svaFs-----g~~LASa~-~ 244 (588)
T 2j04_A 208 TVSASSH-------------------------------------QPVSRMIQNASRRKITDLKIV-----DYKVVLTC-P 244 (588)
T ss_dssp CCCSSSS-------------------------------------CCCEEEEECCCSSCCCCEEEE-----TTEEEEEC-S
T ss_pred ECCCCcc-------------------------------------ccceeeecccccCcEEEEEEE-----CCEEEEEe-C
Confidence 9986410 0122345 3688899999997 47898887 6
Q ss_pred CeEEEEecCCCcceecccccceeeeccccccceEEEEe--ecCCCCcEEEeeCCCeEEEeeC
Q 018858 289 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT--TPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 289 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.|++||+.++ .......+|...+..+++ +| ++..|++++.||+ ++|.+
T Consensus 245 ~tIkLWd~~~~---------~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 245 GYVHKIDLKNY---------SISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp SEEEEEETTTT---------EEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEES
T ss_pred CeEEEEECCCC---------eEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEee
Confidence 99999999986 443344489999999999 77 8888999999999 99986
No 104
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=236.31 Aligned_cols=249 Identities=14% Similarity=0.109 Sum_probs=196.5
Q ss_pred CCceeeeEEEEecCC--CceEEEeCCCCcEEEEECCCCc-EEEEeecCCCCeEEEEE------ecCCCEEEEEeCCCeEE
Q 018858 13 GHKATATCCIASRDR--PGFVASSGEDGCICWFDLRSKD-VQLVTDVGNGPVTSLCF------KSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~--~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~ 83 (349)
+|...|.+++|+|++ +++|++++.||.|++||+.+++ .+..+.+|...|.+++| +|++++|++++.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 689999999999973 5899999999999999999887 78889999999999954 67899999999999999
Q ss_pred EEEccCCC-cccceeeccCc-ccceEEEE----EccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 84 SFDVHMPA-SWRPLESYNYN-KEEINQIV----CNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 84 iwd~~~~~-~~~~~~~~~~~-~~~v~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
+||+++++ ....+.....+ ...+.+++ |+|++++|++++.||.|++||+++++..... .+...+.+++|+|.
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRK 220 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCC
Confidence 99999764 23333222221 23788888 7889999999999999999999998876554 47889999999982
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC----CCCCCccceeee
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK----STTKPLKGSQST 233 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~ 233 (349)
+ .++++|++++.||.|++||+++.+...... ......+..++|
T Consensus 221 ~---------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (357)
T 3i2n_A 221 D---------------------------------ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267 (357)
T ss_dssp S---------------------------------SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred C---------------------------------CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence 0 036889999999999999998765433222 245678899999
Q ss_pred eccccEEEEeeeeeecCce-----------------------eeeeeeeecCCCcceEEEEEeeecCCccEEE-EeeCCC
Q 018858 234 SKVNIRDAEMEILDQSGGK-----------------------RLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDK 289 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~-s~~~d~ 289 (349)
+|+++.+++++..++.+.. ....+..+.+|...|++++|+ |++++|+ +++.|+
T Consensus 268 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS---PDKRGLCVCSSFDQ 344 (357)
T ss_dssp ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC---SSSTTEEEEEETTS
T ss_pred CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc---CCCCeEEEEecCCC
Confidence 9999943334433332111 124667788899999999999 8999888 899999
Q ss_pred eEEEEecCCC
Q 018858 290 LVKVWDCSRF 299 (349)
Q Consensus 290 ~i~vwd~~~~ 299 (349)
.|++||+.+.
T Consensus 345 ~i~iw~~~~~ 354 (357)
T 3i2n_A 345 TVRVLIVTKL 354 (357)
T ss_dssp EEEEEEECC-
T ss_pred cEEEEECCCc
Confidence 9999999875
No 105
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-33 Score=236.90 Aligned_cols=260 Identities=12% Similarity=0.093 Sum_probs=197.4
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEEc----cCCCc------ccceee-ccC----
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDV----HMPAS------WRPLES-YNY---- 101 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~----~~~~~------~~~~~~-~~~---- 101 (349)
..+.+|+++..........|..+|.+++|+|+++ +|++++.||.|++|++ .+++. ...+.. +..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 4456788876665555556779999999999999 9999999999999999 76652 111111 111
Q ss_pred --cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCcee
Q 018858 102 --NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFV 179 (349)
Q Consensus 102 --~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (349)
|...|++++|+|++++|++++.||.|++|| .+++.+..+. .|...|.+++|+|
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~----------------------- 159 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNK----------------------- 159 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECT-----------------------
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECC-----------------------
Confidence 567899999999999999999999999999 6777788888 8999999999999
Q ss_pred EEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC--------------ccceeeeeccccEEEEeee
Q 018858 180 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP--------------LKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 245 (349)
++++|++++.||.|++||+++++........... .+..+.|++++.+++....
T Consensus 160 -------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (425)
T 1r5m_A 160 -------------DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226 (425)
T ss_dssp -------------TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG
T ss_pred -------------CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC
Confidence 7899999999999999999988776655443222 1788999999875553211
Q ss_pred --eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 246 --LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 246 --~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
..............+..|...|.+++|+ |++++|++++.|+.|++||+.+. ..+..+..|...|.+
T Consensus 227 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFN---DTNKLLLSASDDGTLRIWHGGNG---------NSQNCFYGHSQSIVS 294 (425)
T ss_dssp GCEEEEETTCSSCSEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEECSSSB---------SCSEEECCCSSCEEE
T ss_pred CeEEEEEcCCCceeeeeccCCCceEEEEEC---CCCCEEEEEcCCCEEEEEECCCC---------ccceEecCCCccEEE
Confidence 1111112234455677899999999999 89999999999999999999987 555666789999999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++|+| ++ ++++++.||.|++||++
T Consensus 295 ~~~~~-~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 295 ASWVG-DD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp EEEET-TT-EEEEEETTSEEEEEETT
T ss_pred EEECC-CC-EEEEEeCCCcEEEEECC
Confidence 99988 66 99999999999999974
No 106
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.3e-33 Score=242.70 Aligned_cols=211 Identities=17% Similarity=0.257 Sum_probs=173.2
Q ss_pred EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEE
Q 018858 51 QLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVK 128 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 128 (349)
......|...|++++|+| ++++||+|+.||.|+|||+.+++. ..+..+.+|...|++++|+| ++++|++++.||.|+
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 345567889999999999 567899999999999999987643 33344567899999999998 678999999999999
Q ss_pred EEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 129 IIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 129 i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
+||++++....... ..+...+.+++|+| ++++|++|+.||.|+
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~l~~g~~dg~i~ 234 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSA------------------------------------SSRMVVTGDNVGNVI 234 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEET------------------------------------TTTEEEEECSSSBEE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECC------------------------------------CCCEEEEEeCCCcEe
Confidence 99998765433222 02344578899998 899999999999999
Q ss_pred EEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCcc-EEEEee
Q 018858 208 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGG 286 (349)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~-~l~s~~ 286 (349)
+||++. +.+..+.+|...|++++|+ |++. +|++++
T Consensus 235 ~wd~~~-----------------------------------------~~~~~~~~h~~~v~~v~~~---p~~~~~~~s~s 270 (435)
T 4e54_B 235 LLNMDG-----------------------------------------KELWNLRMHKKKVTHVALN---PCCDWFLATAS 270 (435)
T ss_dssp EEESSS-----------------------------------------CBCCCSBCCSSCEEEEEEC---TTCSSEEEEEE
T ss_pred eeccCc-----------------------------------------ceeEEEecccceEEeeeec---CCCceEEEEec
Confidence 999975 4456778899999999999 7765 788999
Q ss_pred CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.|+.|++||+++.+.. ..+....+|...|++++|+| ++++|++++.||.|++||++
T Consensus 271 ~d~~v~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGK------ASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp TTSBCCEEETTTCCSS------SCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESS
T ss_pred CcceeeEEeccccccc------ceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECC
Confidence 9999999999886432 22334467999999999988 88899999999999999974
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.4e-32 Score=236.32 Aligned_cols=284 Identities=15% Similarity=0.103 Sum_probs=219.2
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE-----EeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL-----VTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
+.++.+..+ ..+.+++|+|+ +.++++++.++.|++||+.+++... .+.+|...|.+++|+|+++++++++.|+
T Consensus 114 ~~~~~~~~~-~~~~~~~~s~~-~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 191 (433)
T 3bws_A 114 RFISRFKTG-FQPKSVRFIDN-TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN 191 (433)
T ss_dssp EEEEEEECS-SCBCCCEESSS-SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred eEEEEEcCC-CCceEEEEeCC-CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence 344455544 34568999995 8899999999999999999998876 3457888999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEE-EEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA-CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
.|++||+++++.. ..+..+...+.+++|+|++++++ +++.++.|++||+++++.+..+. ....+.+++|+|
T Consensus 192 ~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~--- 263 (433)
T 3bws_A 192 AVHVFDLKTLAYK---ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSK--- 263 (433)
T ss_dssp EEEEEETTTCCEE---EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECT---
T ss_pred EEEEEECCCceEE---EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcC---
Confidence 9999999876433 34445677899999999998775 55589999999999998888877 345689999999
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc--------CCCeEEEEEccCceeeeecCCCCCCcccee
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--------GDGVVDVINIESELNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (349)
+++.+++++ .||.|++||+++++....... ...+..+
T Consensus 264 ---------------------------------~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~~~ 308 (433)
T 3bws_A 264 ---------------------------------DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP--PGNKRHI 308 (433)
T ss_dssp ---------------------------------TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE--EECEEEE
T ss_pred ---------------------------------CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC--CCCcceE
Confidence 788888887 588999999998766554422 2366789
Q ss_pred eeeccccEEEEeeeeeecC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC---------------CCeEE
Q 018858 232 STSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---------------DKLVK 292 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~---------------d~~i~ 292 (349)
+|+|+++.+++.+..+..+ ....+....+. +...+.+++|+ |+++++++++. ||.|+
T Consensus 309 ~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s---~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~ 384 (433)
T 3bws_A 309 VSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALS---PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVY 384 (433)
T ss_dssp EECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEEC---TTSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEc---CCCCEEEEEecCCCccccccccccccceEEE
Confidence 9999998776544332221 11223333443 56778999999 89998888876 57999
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeC-CCeEEEeeCC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSIS 349 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~ 349 (349)
+||+.++ +.+..+.. ...+.+++|+| ++++|++++. |+.|++|+++
T Consensus 385 ~~d~~~~---------~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 385 VIDTTTD---------TVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEETTTT---------EEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEET
T ss_pred EEECCCC---------cEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEec
Confidence 9999987 34433333 45789999988 8888888874 9999999974
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-33 Score=233.84 Aligned_cols=217 Identities=17% Similarity=0.243 Sum_probs=182.8
Q ss_pred cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCc
Q 018858 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGD 126 (349)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~ 126 (349)
+++..+.+|...|.+++|+|++++|++++.||.|++||+... ....+..+..|...|++++|+++ +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 456678899999999999999999999999999999999743 23555667788999999999977 899999999999
Q ss_pred EEEEEcCCce--EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC--CcEEEEEcC
Q 018858 127 VKIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT--NKICVVAKG 202 (349)
Q Consensus 127 i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 202 (349)
|++||+++++ .+..+. .|...|.+++|+| + +.+|++++.
T Consensus 81 v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~------------------------------------~~~~~~l~~~~~ 123 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHA-VHSASVNSVQWAP------------------------------------HEYGPLLLVASS 123 (379)
T ss_dssp EEEEEEETTEEEEEEEEC-CCSSCEEEEEECC------------------------------------GGGCSEEEEEET
T ss_pred EEEEEcCCCceeEeeeec-CCCcceEEEEeCC------------------------------------CCCCCEEEEecC
Confidence 9999999886 666777 7899999999999 6 899999999
Q ss_pred CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecC-----
Q 018858 203 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE----- 277 (349)
Q Consensus 203 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~----- 277 (349)
||.|++||++.... .....+.+|...|.++.|+ |
T Consensus 124 d~~i~v~d~~~~~~--------------------------------------~~~~~~~~~~~~v~~~~~~---~~~~~~ 162 (379)
T 3jrp_A 124 DGKVSVVEFKENGT--------------------------------------TSPIIIDAHAIGVNSASWA---PATIEE 162 (379)
T ss_dssp TSEEEEEECCTTSC--------------------------------------CCEEEEECCTTCEEEEEEC---CCC---
T ss_pred CCcEEEEecCCCCc--------------------------------------eeeEEecCCCCceEEEEEc---Cccccc
Confidence 99999999986310 1223456788999999999 6
Q ss_pred --------CccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCC--CCcEEEeeCCCeEEEee
Q 018858 278 --------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE--SENLVVCDTSKVVKVYS 347 (349)
Q Consensus 278 --------~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~ 347 (349)
++.+|++++.|+.|++||+++..... .....+.+|...|.+++|+|.. +++|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEE-----EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-----eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 68999999999999999998764321 3455677899999999999832 88999999999999999
Q ss_pred CC
Q 018858 348 IS 349 (349)
Q Consensus 348 ~~ 349 (349)
++
T Consensus 238 ~~ 239 (379)
T 3jrp_A 238 QD 239 (379)
T ss_dssp ES
T ss_pred CC
Confidence 63
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.5e-32 Score=226.82 Aligned_cols=254 Identities=16% Similarity=0.175 Sum_probs=189.4
Q ss_pred CCCeeeeCCceeeeEEEEecC-CCceEEEeCCCCcEEEEECCCC---------cEEEEeecCCCCeEEEEEecC--CCEE
Q 018858 6 AKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSK---------DVQLVTDVGNGPVTSLCFKSG--NEDI 73 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l 73 (349)
+....+.+|...|++++|+|. ++++|++++.||.|++||+.++ +.+..+..|...|.+++|+|+ +++|
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 356778899999999999993 2799999999999999999876 557788889999999999999 9999
Q ss_pred EEEeCCCeEEEEEccCCCcccceee----------ccCcccceEEEEEccC---CCEEEEEcCCCcEEEEEcCCceE--e
Q 018858 74 IYVSSGKEVKSFDVHMPASWRPLES----------YNYNKEEINQIVCNPK---SSFLACADDGGDVKIIDIRQHCL--Y 138 (349)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~--~ 138 (349)
++++.||.|++||+++++....+.. ...+...+.+++|+|+ +.++++++.++.+.+|+...++. +
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 9999999999999987654433221 1246678999999997 89999999999998888877654 6
Q ss_pred ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC----cEEEEEcCCCeEEEEEccCc
Q 018858 139 KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN----KICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~ 214 (349)
..+. +|...|.+++|+| ++ ++|++++.||.|++||++..
T Consensus 208 ~~~~-~h~~~i~~~~~~p------------------------------------~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 208 AKLP-GHKSLIRSISWAP------------------------------------SIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp EECC-CCCSCEEEEEECC------------------------------------CSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred eecC-CCCcceeEEEECC------------------------------------CCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 6677 8999999999999 55 89999999999999999875
Q ss_pred eeeeecCCCCCCccceeeeeccccEEEEe-------eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 215 LNISRSKSTTKPLKGSQSTSKVNIRDAEM-------EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
......... .........++........ .............+..+.+|...|++++|+ |++++|++++.
T Consensus 251 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~~~ 326 (351)
T 3f3f_A 251 LSPLASEES-LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN---LTGTILSSAGD 326 (351)
T ss_dssp C----------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC---SSSCCEEEEET
T ss_pred cCccccCCc-ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc---CCCCEEEEecC
Confidence 433221111 1111122222222222210 001111223456777888999999999999 89999999999
Q ss_pred CCeEEEEecCCCc
Q 018858 288 DKLVKVWDCSRFQ 300 (349)
Q Consensus 288 d~~i~vwd~~~~~ 300 (349)
||.|++||+.++.
T Consensus 327 dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 327 DGKVRLWKATYSN 339 (351)
T ss_dssp TSCEEEEEECTTS
T ss_pred CCcEEEEecCcCc
Confidence 9999999999874
No 110
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.1e-32 Score=230.51 Aligned_cols=219 Identities=17% Similarity=0.211 Sum_probs=180.9
Q ss_pred EECCCCcEEEEeecCCCCeEEEEEecCC-CEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEE
Q 018858 43 FDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLAC 120 (349)
Q Consensus 43 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 120 (349)
|++...+....+.+|...|.+++|+|++ ++|++++.||.|++||+.+++.... ....+|...|.+++|+| ++++|++
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCCEEEE
Confidence 3445566678889999999999999999 9999999999999999997643322 22345889999999999 6799999
Q ss_pred EcCCCcEEEEEcCCceEeceec--cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE
Q 018858 121 ADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 198 (349)
Q Consensus 121 ~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (349)
++.|+.|++||+++. .+..+. ..+...+.+++|+| ++++|+
T Consensus 137 ~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~------------------------------------~~~~l~ 179 (383)
T 3ei3_B 137 SSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSV------------------------------------SRQMLA 179 (383)
T ss_dssp EETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEET------------------------------------TTTEEE
T ss_pred EeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECC------------------------------------CCCEEE
Confidence 999999999999864 444443 03347799999999 789999
Q ss_pred EEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCC
Q 018858 199 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 278 (349)
Q Consensus 199 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 278 (349)
+++.||.|++||++. ..+..+.+|...|.+++|+ |+
T Consensus 180 ~~~~d~~i~i~d~~~-----------------------------------------~~~~~~~~h~~~v~~~~~~---~~ 215 (383)
T 3ei3_B 180 TGDSTGRLLLLGLDG-----------------------------------------HEIFKEKLHKAKVTHAEFN---PR 215 (383)
T ss_dssp EEETTSEEEEEETTS-----------------------------------------CEEEEEECSSSCEEEEEEC---SS
T ss_pred EECCCCCEEEEECCC-----------------------------------------CEEEEeccCCCcEEEEEEC---CC
Confidence 999999999999964 4556777899999999999 88
Q ss_pred cc-EEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 279 GK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 279 ~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++ +|++++.|+.|++||+++.+... ..+... +|...|.+++|+|.++++|++++.|+.|++||++
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKN-----SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTT-----CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCccc-----ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 88 99999999999999998742110 333333 7999999999988678899999999999999974
No 111
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.6e-31 Score=227.38 Aligned_cols=238 Identities=16% Similarity=0.222 Sum_probs=191.4
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
++.|+|+++ ++|++|. |++|+|||..+++....+. .|...|++++|+|+|++|++|+.||.|++||++++ +.
T Consensus 108 ~~~l~wS~~--n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---~~ 181 (420)
T 4gga_A 108 LNLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KR 181 (420)
T ss_dssp CBCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EE
T ss_pred ceeEEECCC--CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---cE
Confidence 567999975 5777765 8999999999999876655 57788999999999999999999999999999976 44
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
+..+.+|...+.+++++ +..+++|+.|+.+++||.+. ...+..+. +|...+..+.+.|
T Consensus 182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~------------------ 240 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAP------------------ 240 (420)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECT------------------
T ss_pred EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecC------------------
Confidence 56667788889888775 67999999999999999985 44556777 8999999999999
Q ss_pred CCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceee
Q 018858 175 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
+++++++++.|+.+++|+...++. ..
T Consensus 241 ------------------~g~~l~s~~~D~~v~i~~~~~~~~------------------------------------~~ 266 (420)
T 4gga_A 241 ------------------DGRHLASGGNDNLVNVWPSAPGEG------------------------------------GW 266 (420)
T ss_dssp ------------------TSSEEEEEETTSCEEEEESSCCSS------------------------------------CS
T ss_pred ------------------CCCeeeeeeccccceEEeeccccc------------------------------------cc
Confidence 799999999999999999986421 11
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEE--eeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLIS--GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 332 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s--~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 332 (349)
..+.....|...|.+++|+| .+..++++ |+.|+.|++||+.++ ....... +...+.++.|++ +++
T Consensus 267 ~~~~~~~~~~~~V~~~~~~p--~~~~~la~~~gs~D~~I~iwd~~t~---------~~~~~~~-~~~~v~~~~~~~-~~~ 333 (420)
T 4gga_A 267 VPLQTFTQHQGAVKAVAWCP--WQSNVLATGGGTSDRHIRIWNVCSG---------ACLSAVD-AHSQVCSILWSP-HYK 333 (420)
T ss_dssp CCSEEECCCSSCEEEEEECT--TCTTEEEEEECTTTCEEEEEETTTT---------EEEEEEE-CSSCEEEEEEET-TTT
T ss_pred eeeeeecccCCceeeeeeCC--CcccEEEEEeecCCCEEEEEeCCcc---------ccceeec-cccceeeeeecC-CCC
Confidence 23445667889999999994 23455554 458999999999997 4443443 445788889988 566
Q ss_pred cEEEee--CCCeEEEeeCC
Q 018858 333 NLVVCD--TSKVVKVYSIS 349 (349)
Q Consensus 333 ~l~~~~--~dg~i~iw~~~ 349 (349)
.+++++ .|+.|+|||++
T Consensus 334 ~lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 334 ELISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp EEEEEECTTTCCEEEEETT
T ss_pred eEEEEEecCCCEEEEEECC
Confidence 666654 79999999974
No 112
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=9.6e-32 Score=215.43 Aligned_cols=265 Identities=9% Similarity=0.019 Sum_probs=172.7
Q ss_pred CCeeeeCCce----eeeEEEEecCCCc--eEEEeCCCCcEEEEECCCC---cEEEEeecCCC------------------
Q 018858 7 KPRRLRGHKA----TATCCIASRDRPG--FVASSGEDGCICWFDLRSK---DVQLVTDVGNG------------------ 59 (349)
Q Consensus 7 ~~~~l~~h~~----~i~~~~~~~~~~~--~l~t~~~dg~i~vwd~~~~---~~~~~~~~~~~------------------ 59 (349)
++.+|+.-.+ .+.++-|-..+.+ -++++++ ..|++|+..++ +.++++..|..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 105 (356)
T 2w18_A 27 LVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA 105 (356)
T ss_dssp EEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE
T ss_pred eeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee
Confidence 4445554333 2445545333222 3666665 68999999988 67788877764
Q ss_pred -------CeEEEEEecC----CCEEEEEeC--------------------CCeEEEEEccCCCcccceeeccCcccceEE
Q 018858 60 -------PVTSLCFKSG----NEDIIYVSS--------------------GKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (349)
Q Consensus 60 -------~v~~~~~~~~----~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (349)
.|.+++++|+ ++.+++++. |+.|++|++... .+.+..+..|...++.
T Consensus 106 ~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~ 183 (356)
T 2w18_A 106 LGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED--GGGKENQFLMPPEETI 183 (356)
T ss_dssp ECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT--SCEEEEEEECCCSSCE
T ss_pred eccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC--CceeeeeccCCCceee
Confidence 3556777778 777776553 778888888431 1333444556777888
Q ss_pred EEEcc---CCCEEEEEcCCCcEEEEEcCCceEeceeccccc---cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEe
Q 018858 109 IVCNP---KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS---SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAI 182 (349)
Q Consensus 109 ~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (349)
++|+| ++.+|++++.|++|+|||++++++++++. +|. ..+.+++|+|++..+ +
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~-g~~~~v~~v~~vafSpdG~~l--------------------v 242 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH-IDDSYQASVCHKAYSEMGLLF--------------------I 242 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE-CCC---CCCEEEEEEETTEEE--------------------E
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc-CCCcceeeeEEEEECCCCCEE--------------------E
Confidence 88888 67899999999999999999999999997 543 356777899942211 0
Q ss_pred ecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC
Q 018858 183 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG 262 (349)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (349)
..+. +.....+++|+.|++|++||..+++..... ......+
T Consensus 243 s~s~----~~~~w~laSGs~D~tIklWd~~tgk~l~v~-----------------------------------~~~~p~G 283 (356)
T 2w18_A 243 VLSH----PCAKESESLRSPVFQLIVINPKTTLSVGVM-----------------------------------LYCLPPG 283 (356)
T ss_dssp EEC----------------CCEEEEEEETTTTEEEEEE-----------------------------------EECCCTT
T ss_pred Eecc----CCCcceeeccCCCcEEEEEECCCCEEEEEE-----------------------------------EeeccCC
Confidence 0000 001113477889999999999875322100 0000135
Q ss_pred CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceE-EEEeecCCCCcEEEeeCCC
Q 018858 263 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN-WLCTTPTESENLVVCDTSK 341 (349)
Q Consensus 263 h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg 341 (349)
|...+.+.. .++.++++++.|++|+|||+.++ +.+..+.+|...+. .++|+| ++++|++|+.|+
T Consensus 284 h~~~~lsg~-----~sg~~lASgS~DgTIkIWDl~tG---------k~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~ 348 (356)
T 2w18_A 284 QAGRFLEGD-----VKDHCAAAILTSGTIAIWDLLLG---------QCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDG 348 (356)
T ss_dssp CCCCEEEEE-----EETTEEEEEETTSCEEEEETTTC---------SEEEEECCC--CCCCEEEECS-SSSEEEEECTTS
T ss_pred CcceeEccc-----cCCCEEEEEcCCCcEEEEECCCC---------cEEEEecCCCCCeEEEEEECC-CCCEEEEEECCC
Confidence 655543333 34789999999999999999998 67778888887766 589988 899999999999
Q ss_pred eEEEeeCC
Q 018858 342 VVKVYSIS 349 (349)
Q Consensus 342 ~i~iw~~~ 349 (349)
+|+|||++
T Consensus 349 TIklWd~~ 356 (356)
T 2w18_A 349 NIFVYHYS 356 (356)
T ss_dssp CEEEEEEC
T ss_pred cEEEecCC
Confidence 99999974
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.2e-32 Score=224.29 Aligned_cols=245 Identities=11% Similarity=0.027 Sum_probs=190.3
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCC-EEEEEcCCCcEEEE
Q 018858 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKII 130 (349)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~ 130 (349)
....+|...|.+++|+|++++|++++.|+.|++|++.++...........|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 33457999999999999999999999999999999987653333444456788999999999999 99999999999999
Q ss_pred Ec-CCceEeceeccc--cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 131 DI-RQHCLYKSLRAG--HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 131 d~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
|+ .+++. ..+. . |...|.+++|+| +++|++++.|+.|+
T Consensus 85 d~~~~~~~-~~~~-~~~~~~~v~~l~~~~-------------------------------------~~~l~s~~~d~~i~ 125 (342)
T 1yfq_A 85 DLIGSPSF-QALT-NNEANLGICRICKYG-------------------------------------DDKLIAASWDGLIE 125 (342)
T ss_dssp CSSSSSSE-EECB-SCCCCSCEEEEEEET-------------------------------------TTEEEEEETTSEEE
T ss_pred EeccCCce-Eecc-ccCCCCceEEEEeCC-------------------------------------CCEEEEEcCCCeEE
Confidence 99 77755 5666 7 899999999987 57899999999999
Q ss_pred EEEccC---------ceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC----cee---eeeeeeecCCCcceEEEE
Q 018858 208 VINIES---------ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKR---LHLDYSVGGHTAAASCVA 271 (349)
Q Consensus 208 i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~h~~~i~~i~ 271 (349)
+||+++ .+...... ....+.+++|++++ +++ +..++.+ ... .........|...|.++.
T Consensus 126 iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~ 200 (342)
T 1yfq_A 126 VIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR--LIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA 200 (342)
T ss_dssp EECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE--EEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE
T ss_pred EEcccccccccccccCCeeeEEe--eCCceEEEEecCCc--EEE-EeCCCeEEEEECCccccccceeeecCCCCceeEEE
Confidence 999987 54444333 55778899999998 332 2222111 111 112223446788999999
Q ss_pred EeeecC-CccEEEEeeCCCeEEEEecCCC--cceecccccceeeecccc---------ccceEEEEeecCCCCcEEEeeC
Q 018858 272 FSMFGE-RGKYLISGGNDKLVKVWDCSRF--QGVQTSINNDLLIKNINL---------NKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 272 ~~~~~~-~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
|+ | +++++++++.||.|++|+++.. .... .....+..| ...|.+++|+| ++++|++++.
T Consensus 201 ~~---~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 271 (342)
T 1yfq_A 201 LL---PKEQEGYACSSIDGRVAVEFFDDQGDDYNS-----SKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGS 271 (342)
T ss_dssp EC---SGGGCEEEEEETTSEEEEEECCTTCCSTTC-----TTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEET
T ss_pred EC---CCCCCEEEEEecCCcEEEEEEcCCCccccc-----ccceeeecccccccccccceeEEEEEEcC-CCCEEEEecC
Confidence 99 9 9999999999999999999875 1000 222334444 44999999988 8889999999
Q ss_pred CCeEEEeeCC
Q 018858 340 SKVVKVYSIS 349 (349)
Q Consensus 340 dg~i~iw~~~ 349 (349)
||.|++||+.
T Consensus 272 dg~i~vwd~~ 281 (342)
T 1yfq_A 272 DGIISCWNLQ 281 (342)
T ss_dssp TSCEEEEETT
T ss_pred CceEEEEcCc
Confidence 9999999974
No 114
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-31 Score=217.27 Aligned_cols=240 Identities=14% Similarity=0.136 Sum_probs=192.7
Q ss_pred CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcE
Q 018858 48 KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127 (349)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (349)
.+....+.+|...|.+++| |++++|++++.||.|++||+.+++ ....+..|...+.+++|+|++++|++++.||.|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW---LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---EEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---EEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 3567889999999999999 999999999999999999998653 344455577899999999999999999999999
Q ss_pred EEEEcCCc---eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC
Q 018858 128 KIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 204 (349)
Q Consensus 128 ~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 204 (349)
++|++... +.+..+. .|...+.+++|. ++++++++.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--------------------------------------~~~l~~~~~d~ 124 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLI-GHQGNVCSLSFQ--------------------------------------DGVVISGSWDK 124 (313)
T ss_dssp EEEETTCCTTSCC-CEEC-CCSSCEEEEEEE--------------------------------------TTEEEEEETTS
T ss_pred EEEEeeecCCCCcccchh-hcccCEEEEEec--------------------------------------CCEEEEEeCCC
Confidence 99998753 5566777 899999999994 46899999999
Q ss_pred eEEEEEccCceeeeecCCCCCCccceeeeec-cccEEEEeeeeeecCc--eeeeeeeeecC-CCcceEEEEEeeecCCcc
Q 018858 205 VVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILDQSGG--KRLHLDYSVGG-HTAAASCVAFSMFGERGK 280 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~ 280 (349)
.|++|| ......... .....+..+.+.| ++..+++. ..++.+. ........+.. |...+.+++|+ |++.
T Consensus 125 ~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~---~~~~ 197 (313)
T 3odt_A 125 TAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSENKFLTA-SADKTIKLWQNDKVIKTFSGIHNDVVRHLAVV---DDGH 197 (313)
T ss_dssp EEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTTTEEEEE-ETTSCEEEEETTEEEEEECSSCSSCEEEEEEE---ETTE
T ss_pred CEEEEc--CCcEEEecc-cCCCceeEEEEccCCCCEEEEE-ECCCCEEEEecCceEEEEeccCcccEEEEEEc---CCCe
Confidence 999999 333333222 2456778888888 88888753 2222211 12234455555 88999999999 7887
Q ss_pred EEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 281 YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 281 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+++++.|+.|++||++++ ..+..+..|...|++++|+| ++ .|++++.||.|++||++
T Consensus 198 -~~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 198 -FISCSNDGLIKLVDMHTG---------DVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp -EEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTT
T ss_pred -EEEccCCCeEEEEECCch---------hhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECC
Confidence 999999999999999987 56677788999999999988 66 69999999999999974
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-32 Score=231.53 Aligned_cols=235 Identities=11% Similarity=0.115 Sum_probs=170.1
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCC-----CeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG-----PVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
.|...|.+++|+|+ |++||+++.||.+++||.+. ++..+. |.. .|.+++|+|+|++|++|+.||+|++||+
T Consensus 83 ~~~~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 83 QPVCYPRVCKPSPI-DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp SCSCCEEEEEECSS-SSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred CCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 46889999999998 89999999999999999654 666667 665 5999999999999999999999999999
Q ss_pred cCCCccc----ceeec----cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE---eceeccccccceeEEEEcc
Q 018858 88 HMPASWR----PLESY----NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 88 ~~~~~~~----~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~ 156 (349)
.++.... .+..+ .+|...|.+++|+|++ +++++.|+.|++||+.+++. ..+++.+|...|.+++|+
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 9764211 23443 5677899999999999 88888999999999987763 244532677889999996
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
++.|++++ ++.|++||+.+++....
T Consensus 236 -------------------------------------g~~LASa~-~~tIkLWd~~~~~~~~~----------------- 260 (588)
T 2j04_A 236 -------------------------------------DYKVVLTC-PGYVHKIDLKNYSISSL----------------- 260 (588)
T ss_dssp -------------------------------------TTEEEEEC-SSEEEEEETTTTEEEEE-----------------
T ss_pred -------------------------------------CCEEEEEe-CCeEEEEECCCCeEEEE-----------------
Confidence 25788887 69999999997543111
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEE--eeecCCccEEEEeeCCCeEEEEecCCCc-----ce-ecc---
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF--SMFGERGKYLISGGNDKLVKVWDCSRFQ-----GV-QTS--- 305 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~--~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~-~~~--- 305 (349)
..+|...++.+.| + |++..++++++||+ ++|..+.-. .. ...
T Consensus 261 -----------------------~~gh~~~V~~va~~~s---~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~ 313 (588)
T 2j04_A 261 -----------------------KTGSLENFHIIPLNHE---KESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKK 313 (588)
T ss_dssp -----------------------ECSCCSCCCEEEETTC---SSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHH
T ss_pred -----------------------EcCCCceEEEEEeeeC---CCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCE
Confidence 1145555555555 5 55555555555555 555543110 00 000
Q ss_pred -----cccceeeeccccccceEEEEeecCCCCcEEEee
Q 018858 306 -----INNDLLIKNINLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 306 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
.....+..+ .+...|.+++++| +|+.+|+++
T Consensus 314 v~lW~~~g~~l~~~-~~~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 314 FKKWSTIWNEFNNY-ETTLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp HHHTTTTTTSSSSS-CCEEEEEEEEECT-TSSEEEEEE
T ss_pred EEEEECCCCceeee-ccceEEEEEEECC-CCCEEEEEE
Confidence 000222233 3366799999988 998999886
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.3e-31 Score=229.82 Aligned_cols=229 Identities=20% Similarity=0.285 Sum_probs=186.7
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-------EEEeecCCCCeEEEEEec-CCCEEEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-------QLVTDVGNGPVTSLCFKS-GNEDIIYV 76 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~ 76 (349)
...+..+.+|...|++++|+|++..+|++|+.||.|++||+..+.. ...+..|...|.+++|+| ++.+|+++
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 5788899999999999999998433999999999999999987322 355678999999999999 77889999
Q ss_pred eCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCC-EEEEEcCCCcEEEEEcCC-ceEeceeccccccceeEEEE
Q 018858 77 SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~ 154 (349)
+.||.|++||++++.....+..+..|...|++++|+|++. ++++|+.||.|++||+++ ..++..+. .|...|.+++|
T Consensus 251 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~ 329 (430)
T 2xyi_A 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQW 329 (430)
T ss_dssp ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEE
T ss_pred eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEE
Confidence 9999999999997643455556667889999999999886 688999999999999997 56677787 89999999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC-cEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
+| ++ .+|++++.||.|++||+...........
T Consensus 330 sp------------------------------------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------- 362 (430)
T 2xyi_A 330 SP------------------------------------HNETILASSGTDRRLHVWDLSKIGEEQSTED----------- 362 (430)
T ss_dssp CS------------------------------------SCTTEEEEEETTSCCEEEEGGGTTCCCCHHH-----------
T ss_pred CC------------------------------------CCCCEEEEEeCCCcEEEEeCCCCccccCccc-----------
Confidence 99 55 5799999999999999986211000000
Q ss_pred eccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCC
Q 018858 234 SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~ 299 (349)
.. .....++..+.+|...|++++|+ |+++ +|++++.||.|+||++...
T Consensus 363 ~~---------------~~~~~~~~~~~~h~~~v~~~~~~---p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 363 AE---------------DGPPELLFIHGGHTAKISDFSWN---PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HH---------------HCCTTEEEECCCCSSCEEEEEEC---SSSTTEEEEEETTSEEEEEEECHH
T ss_pred cc---------------cCCcceEEEcCCCCCCceEEEEC---CCCCCEEEEEECCCCEEEeEcccc
Confidence 00 00114556677899999999999 8888 8999999999999999864
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.2e-30 Score=219.76 Aligned_cols=246 Identities=11% Similarity=0.109 Sum_probs=194.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceE-EEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~ 81 (349)
+++.++.+.+|.. +.+++|+|+ ++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++++ .++.
T Consensus 21 ~~~~~~~~~~~~~-~~~~~~s~d-g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~ 97 (391)
T 1l0q_A 21 SNKVTATIPVGSN-PMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASST 97 (391)
T ss_dssp TTEEEEEEECSSS-EEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred CCeEEEEeecCCC-cceEEECCC-CCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCE
Confidence 4566777777754 899999999 6655 788889999999999999988888655 899999999999886554 6799
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEE-EEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
|++||+.+++... .+.. ...+.+++|+|+++++ ++++.++.|++||+++++.+..+. . ...+.+++|+|
T Consensus 98 v~v~d~~~~~~~~---~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~-~~~~~~~~~~~---- 167 (391)
T 1l0q_A 98 LSVIDTTSNTVAG---TVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-V-GRSPKGIAVTP---- 167 (391)
T ss_dssp EEEEETTTTEEEE---EEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-C-CSSEEEEEECT----
T ss_pred EEEEECCCCeEEE---EEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-c-CCCcceEEECC----
Confidence 9999999764433 3332 3568999999999877 688889999999999999888887 4 35578999999
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
+++.+ ++++.++.|++||++++
T Consensus 168 --------------------------------dg~~l~~~~~~~~~v~~~d~~~~------------------------- 190 (391)
T 1l0q_A 168 --------------------------------DGTKVYVANFDSMSISVIDTVTN------------------------- 190 (391)
T ss_dssp --------------------------------TSSEEEEEETTTTEEEEEETTTT-------------------------
T ss_pred --------------------------------CCCEEEEEeCCCCEEEEEECCCC-------------------------
Confidence 67766 67788999999999874
Q ss_pred EEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee---CCCeEEEEecCCCcceecccccceeeeccc
Q 018858 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
.....+. +...+.+++|+ |++++|++++ .++.|++||+.++ ..+..+..
T Consensus 191 ---------------~~~~~~~-~~~~~~~~~~~---~~g~~l~~~~~~~~~~~v~~~d~~~~---------~~~~~~~~ 242 (391)
T 1l0q_A 191 ---------------SVIDTVK-VEAAPSGIAVN---PEGTKAYVTNVDKYFNTVSMIDTGTN---------KITARIPV 242 (391)
T ss_dssp ---------------EEEEEEE-CSSEEEEEEEC---TTSSEEEEEEECSSCCEEEEEETTTT---------EEEEEEEC
T ss_pred ---------------eEEEEEe-cCCCccceEEC---CCCCEEEEEecCcCCCcEEEEECCCC---------eEEEEEec
Confidence 2222232 44578899999 8999998887 6899999999987 44444444
Q ss_pred cccceEEEEeecCCCCcE-EEeeCCCeEEEeeCC
Q 018858 317 LNKKVNWLCTTPTESENL-VVCDTSKVVKVYSIS 349 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~ 349 (349)
|. .+.+++|+| ++++| ++++.|+.|++||++
T Consensus 243 ~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 243 GP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp CS-SEEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred CC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECC
Confidence 43 578899988 77766 566889999999974
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-31 Score=222.70 Aligned_cols=209 Identities=10% Similarity=0.050 Sum_probs=161.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC---------CCcEEEEee-cCCCCeEEEEEec--CCCE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR---------SKDVQLVTD-VGNGPVTSLCFKS--GNED 72 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~ 72 (349)
++.+..+. ...|.++.|+|. +++++.|++|++|+.. +++.+..+. .|..+|.+++|+| ++++
T Consensus 68 ~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 141 (343)
T 3lrv_A 68 SKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEY 141 (343)
T ss_dssp SSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCE
T ss_pred CcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCE
Confidence 34444444 466777788775 9999999999999665 455444444 5778999999999 9999
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeec-cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe-ceeccc-cccce
Q 018858 73 IIYVSSGKEVKSFDVHMPASWRPLESY-NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-KSLRAG-HSSIC 149 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~-~~~~v 149 (349)
+++++.||.|++||+++++. +... ..+...+.+++|+|++.+|++|+.||.|++||+++++.+ ..+. . |...|
T Consensus 142 l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-~~h~~~v 217 (343)
T 3lrv_A 142 FIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP-VDEEAKI 217 (343)
T ss_dssp EEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC-CCTTSCE
T ss_pred EEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe-ccCCCCE
Confidence 99999999999999997654 2222 234557999999999999999999999999999998877 6777 6 89999
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
.+++|+| ++.+|++++ ++.|++||+++.+...
T Consensus 218 ~~l~fs~------------------------------------~g~~l~s~~-~~~v~iwd~~~~~~~~----------- 249 (343)
T 3lrv_A 218 KEVKFAD------------------------------------NGYWMVVEC-DQTVVCFDLRKDVGTL----------- 249 (343)
T ss_dssp EEEEECT------------------------------------TSSEEEEEE-SSBEEEEETTSSTTCB-----------
T ss_pred EEEEEeC------------------------------------CCCEEEEEe-CCeEEEEEcCCCCcce-----------
Confidence 9999999 799999999 5599999999742111
Q ss_pred eeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcce--EEEEEeeecCCccEEEEeeC-CCeEEEEecCCCc
Q 018858 230 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA--SCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQ 300 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i--~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~ 300 (349)
.+..+..|...+ .+++|+ |++++|++++. |+.|++|++....
T Consensus 250 --------------------------~~~~~~~~~~~~~~~~~~~~---~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 250 --------------------------AYPTYTIPEFKTGTVTYDID---DSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp --------------------------SSCCCBC-----CCEEEEEC---TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred --------------------------eecccccccccccceEEEEC---CCCCEEEEecCCCCcEEEEEEcccc
Confidence 111122233333 469999 89999999988 9999999997653
No 119
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.2e-30 Score=213.46 Aligned_cols=240 Identities=15% Similarity=0.200 Sum_probs=187.5
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
.++|+|+++ ++|++| .|++|+|||+++++.+..+. .|...|.+++|+|++++|++|+.||.|++||+++++ .
T Consensus 28 ~~~l~WS~~--~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~---~ 101 (318)
T 4ggc_A 28 LNLVDWSSG--NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---R 101 (318)
T ss_dssp CBCEEECTT--SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---E
T ss_pred ceEEEECCC--CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce---e
Confidence 578999987 377776 48999999999999877665 577889999999999999999999999999999764 4
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
+..+.+|...+.++. +++..+++++.++.+++|+.... ..+..+. +|...+..+.+.+
T Consensus 102 ~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------------ 160 (318)
T 4ggc_A 102 LRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAP------------------ 160 (318)
T ss_dssp EEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECT------------------
T ss_pred EEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEc-CccCceEEEEEcC------------------
Confidence 455666777776655 45679999999999999998865 4556666 8999999999999
Q ss_pred CCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceee
Q 018858 175 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
++++|++++.||.|++||+++++. ..
T Consensus 161 ------------------~~~~l~s~~~d~~i~iwd~~~~~~------------------------------------~~ 186 (318)
T 4ggc_A 161 ------------------DGRHLASGGNDNLVNVWPSAPGEG------------------------------------GW 186 (318)
T ss_dssp ------------------TSSEEEEEETTSCEEEEESSCBTT------------------------------------BS
T ss_pred ------------------CCCEEEEEecCcceeEEECCCCcc------------------------------------cc
Confidence 789999999999999999986421 11
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcE
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 334 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 334 (349)
........|.+.|..+.++|..++.-.+++++.++.|++||..... ......+...+..+++.| +++.+
T Consensus 187 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~----------~~~~~~~~~~v~~~~~~~-~~~~~ 255 (318)
T 4ggc_A 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----------CLSAVDAHSQVCSILWSP-HYKEL 255 (318)
T ss_dssp CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC----------EEEEEECSSCEEEEEEET-TTTEE
T ss_pred cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc----------ccccccceeeeeeeeecc-cccce
Confidence 2234455677889999999422222234567789999999998852 234455777899999988 55566
Q ss_pred EEe--eCCCeEEEeeCC
Q 018858 335 VVC--DTSKVVKVYSIS 349 (349)
Q Consensus 335 ~~~--~~dg~i~iw~~~ 349 (349)
+++ +.|+.|++||++
T Consensus 256 ~~~sg~~d~~i~iwd~~ 272 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYP 272 (318)
T ss_dssp EEEECTTTCCEEEEETT
T ss_pred EEEEEcCCCEEEEEECC
Confidence 554 379999999974
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.9e-30 Score=213.87 Aligned_cols=238 Identities=13% Similarity=0.135 Sum_probs=179.5
Q ss_pred eeeEEEEecCCCceE-EEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC-Cccc
Q 018858 17 TATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASWR 94 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~ 94 (349)
.+..+++.++ ++.+ ++++.|+.|++||..+++.+..+. +..+|.+++++++ .++++. ++.|++||+.++ +...
T Consensus 60 ~~~~~~~~~~-~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~-~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 60 HLSKVRMLHR-TNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVSY-GDVISVFKFGNPWKRIT 134 (355)
T ss_dssp CCCEEEECTT-SSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEEE-TTEEEEEESSTTCCBSS
T ss_pred CeEEEEEcCC-CCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEEE-cCEEEEEECCCCceeeE
Confidence 5777888887 5555 678888999999999999988887 6679999999875 344444 789999999876 4333
Q ss_pred ceeeccCcccceEEEEEccCCCEEEE--EcCCCcEEEEEcCCce----------------EeceeccccccceeEEEEcc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLAC--ADDGGDVKIIDIRQHC----------------LYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+.. ....+++++ .++++ |+.+|.|++||+++++ .+..+. +|...|.+++|+|
T Consensus 135 ~~~~------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~ 205 (355)
T 3vu4_A 135 DDIR------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNR 205 (355)
T ss_dssp CCEE------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECT
T ss_pred Eecc------CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECC
Confidence 3332 334456666 56665 6889999999999765 156777 8999999999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCe-EEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV-VDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
++++|++|+.||+ |++||++++
T Consensus 206 ------------------------------------~g~~l~s~s~d~~~v~iwd~~~~--------------------- 228 (355)
T 3vu4_A 206 ------------------------------------KSDMVATCSQDGTIIRVFKTEDG--------------------- 228 (355)
T ss_dssp ------------------------------------TSSEEEEEETTCSEEEEEETTTC---------------------
T ss_pred ------------------------------------CCCEEEEEeCCCCEEEEEECCCC---------------------
Confidence 8999999999998 999999975
Q ss_pred cccEEEEeeeeeecCceeeeeeeeec-C-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccc-e--
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVG-G-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND-L-- 310 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~-- 310 (349)
+.+..+. + |...|++++|+ |++++|++++.|++|++||++.........-.. .
T Consensus 229 -------------------~~~~~~~~g~h~~~v~~~~~s---~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~ 286 (355)
T 3vu4_A 229 -------------------VLVREFRRGLDRADVVDMKWS---TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM 286 (355)
T ss_dssp -------------------CEEEEEECTTCCSCEEEEEEC---TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC
T ss_pred -------------------cEEEEEEcCCCCCcEEEEEEC---CCCCEEEEEECCCEEEEEEccCCCCcccccccceeec
Confidence 4455666 5 89999999999 899999999999999999998753211100000 0
Q ss_pred -----------eeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 311 -----------LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 311 -----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.............++|++ +++.|++++.||.+++|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 287 KYFQSEWSLCNFKLSVDKHVRGCKIAWIS-ESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp CCCCCSSCSEEEECCCCTTCCCCEEEESS-SSEEEEEETTTTEEEEEEE
T ss_pred cccccccceeEEEeccCCCCCceEEEEeC-CCCEEEEEeCCCeEEEEEE
Confidence 000111222346688977 8889999999999999985
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.1e-30 Score=216.04 Aligned_cols=253 Identities=10% Similarity=0.035 Sum_probs=183.8
Q ss_pred EECCCCcEEEEeecCCCCeEEEEEecC---CCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEE
Q 018858 43 FDLRSKDVQLVTDVGNGPVTSLCFKSG---NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA 119 (349)
Q Consensus 43 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 119 (349)
|+....+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+++... .....+..|...|.+++|+|++++|+
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcCCCEEE
Confidence 455566678888999999999999999 59999999999999999986321 22245666889999999999999999
Q ss_pred EEcCCCcEEEEEcCCceEeceeccccccceeEEEE--ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE
Q 018858 120 CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF--IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 197 (349)
Q Consensus 120 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (349)
+++.||.|++||+++++.+... .|...|.+++| +| ++++|
T Consensus 103 s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~------------------------------------~~~~l 144 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAP------------------------------------NYSCV 144 (368)
T ss_dssp EEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECS------------------------------------SCEEE
T ss_pred EEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCC------------------------------------CCCEE
Confidence 9999999999999999877644 58999999999 66 78899
Q ss_pred EEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee------eeecCceeeeeeeeecCCCcceEEEE
Q 018858 198 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI------LDQSGGKRLHLDYSVGGHTAAASCVA 271 (349)
Q Consensus 198 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~h~~~i~~i~ 271 (349)
++++.||.|++||+++++......... .+..+.+.+ ..+++... ++..... .........+...+.++.
T Consensus 145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 219 (368)
T 3mmy_A 145 MTGSWDKTLKFWDTRSSNPMMVLQLPE--RCYCADVIY--PMAVVATAERGLIVYQLENQP-SEFRRIESPLKHQHRCVA 219 (368)
T ss_dssp EEEETTSEEEEECSSCSSCSEEEECSS--CEEEEEEET--TEEEEEEGGGCEEEEECSSSC-EEEEECCCSCSSCEEEEE
T ss_pred EEccCCCcEEEEECCCCcEEEEEecCC--CceEEEecC--CeeEEEeCCCcEEEEEecccc-chhhhccccccCCCceEE
Confidence 999999999999999876555444332 233333333 33332111 1111110 011111112334455666
Q ss_pred EeeecCCcc----EEEEeeCCCeEEEEecCCCcceecccccceeeecccccc------------ceEEEEeecCCCCcEE
Q 018858 272 FSMFGERGK----YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK------------KVNWLCTTPTESENLV 335 (349)
Q Consensus 272 ~~~~~~~~~----~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~l~ 335 (349)
+. ++.. .+++++.|+.|++||++..... ..+..+..|.. .|++++|+| ++++|+
T Consensus 220 ~~---~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~ 289 (368)
T 3mmy_A 220 IF---KDKQNKPTGFALGSIEGRVAIHYINPPNPA------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLA 289 (368)
T ss_dssp EE---ECTTSCEEEEEEEETTSEEEEEESSCSCHH------HHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEE
T ss_pred Ec---ccCCCCCCeEEEecCCCcEEEEecCCCCcc------ccceeeeeeecccccccccccccceEEEEEec-CCCEEE
Confidence 65 3333 3999999999999999886321 12233344444 799999988 888999
Q ss_pred EeeCCCeEEEeeCC
Q 018858 336 VCDTSKVVKVYSIS 349 (349)
Q Consensus 336 ~~~~dg~i~iw~~~ 349 (349)
+++.||.|++||++
T Consensus 290 s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 290 TVGSDGRFSFWDKD 303 (368)
T ss_dssp EEETTSCEEEEETT
T ss_pred EEccCCeEEEEECC
Confidence 99999999999974
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=8e-31 Score=210.14 Aligned_cols=180 Identities=8% Similarity=0.043 Sum_probs=138.3
Q ss_pred CCCcEEEEEC-CCCcEEEEeecCCCCeEEEEEec---CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEE
Q 018858 36 EDGCICWFDL-RSKDVQLVTDVGNGPVTSLCFKS---GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC 111 (349)
Q Consensus 36 ~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 111 (349)
.|+.|++|++ .+++.+..+..|...+..++|++ +++.|++++.|++|+|||+++++..+.+.....+...+.+++|
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 4889999998 45788888888999999999998 7799999999999999999998665555432222346778899
Q ss_pred ccCCCEE------------EEEcCCCcEEEEEcCCceEeceec----cccccceeEEEEccCCCCCCCCCCCCCCccccC
Q 018858 112 NPKSSFL------------ACADDGGDVKIIDIRQHCLYKSLR----AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYN 175 (349)
Q Consensus 112 ~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
+|++.++ ++|+.|++|++||..+++.+..+. .+|...+.+..+
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--------------------- 293 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--------------------- 293 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---------------------
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---------------------
Confidence 9999876 567889999999999998776542 144433322222
Q ss_pred CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeee
Q 018858 176 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 255 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
++..+++++.|++|+|||+.++ +
T Consensus 294 -----------------sg~~lASgS~DgTIkIWDl~tG----------------------------------------k 316 (356)
T 2w18_A 294 -----------------KDHCAAAILTSGTIAIWDLLLG----------------------------------------Q 316 (356)
T ss_dssp -----------------ETTEEEEEETTSCEEEEETTTC----------------------------------------S
T ss_pred -----------------CCCEEEEEcCCCcEEEEECCCC----------------------------------------c
Confidence 4578999999999999999986 5
Q ss_pred eeeeecCCCcceE-EEEEeeecCCccEEEEeeCCCeEEEEec
Q 018858 256 LDYSVGGHTAAAS-CVAFSMFGERGKYLISGGNDKLVKVWDC 296 (349)
Q Consensus 256 ~~~~~~~h~~~i~-~i~~~~~~~~~~~l~s~~~d~~i~vwd~ 296 (349)
++.++.+|...+. .++|+ |||++|++|+.|++|+|||+
T Consensus 317 ~l~tL~gH~~~vvs~vafS---PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQHWSFVKWS---GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--CCCCEEEEC---SSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCeEEEEEEC---CCCCEEEEEECCCcEEEecC
Confidence 6677888877554 68999 89999999999999999996
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1e-30 Score=238.84 Aligned_cols=214 Identities=17% Similarity=0.246 Sum_probs=179.5
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEE
Q 018858 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKI 129 (349)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i 129 (349)
..+.+|.++|++++|+|++++|++|+.||.|++||+..+ ....+..+.+|...|++++|+|+ +++|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 467889999999999999999999999999999999843 23556677889999999999988 899999999999999
Q ss_pred EEcCCce--EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC--CcEEEEEcCCCe
Q 018858 130 IDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT--NKICVVAKGDGV 205 (349)
Q Consensus 130 ~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~ 205 (349)
||+++++ ....+. .|...|.+++|+| + ++++++|+.||.
T Consensus 82 wd~~~~~~~~~~~~~-~h~~~V~~v~~sp------------------------------------~~~~~~l~sgs~dg~ 124 (753)
T 3jro_A 82 WKEENGRWSQIAVHA-VHSASVNSVQWAP------------------------------------HEYGPLLLVASSDGK 124 (753)
T ss_dssp EEEETTEEEEEEEEC-CCSSCEEEEEECC------------------------------------GGGCSEEEEEETTSE
T ss_pred EECCCCccccccccc-CCCCCeEEEEECC------------------------------------CCCCCEEEEEeCCCc
Confidence 9999886 666777 8999999999999 6 899999999999
Q ss_pred EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecC--------
Q 018858 206 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE-------- 277 (349)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~-------- 277 (349)
|++||++.... .....+.+|...|.++.|+ |
T Consensus 125 I~vwdl~~~~~--------------------------------------~~~~~~~~~~~~v~~l~~~---p~~~~~~~~ 163 (753)
T 3jro_A 125 VSVVEFKENGT--------------------------------------TSPIIIDAHAIGVNSASWA---PATIEEDGE 163 (753)
T ss_dssp EEEEECCSSSC--------------------------------------CCCEEEECCSSCEEEEEEC---CCC------
T ss_pred EEEEEeecCCC--------------------------------------cceeEeecCCCceEEEEec---Ccccccccc
Confidence 99999986310 1223456788999999999 6
Q ss_pred -----CccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCC--CCcEEEeeCCCeEEEeeCC
Q 018858 278 -----RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE--SENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 278 -----~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~ 349 (349)
+++++++|+.||.|++||+++..... .....+.+|...|++++|+|.+ +++|++++.||.|++||++
T Consensus 164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-----~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---CGGGCCEEEEETTSCEEEEEEETTTTEE-----EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccCCCCCEEEEEECCCeEEEEeccCCcccc-----eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 68999999999999999998864321 3445667899999999999843 8899999999999999963
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.7e-30 Score=218.90 Aligned_cols=228 Identities=12% Similarity=0.058 Sum_probs=157.5
Q ss_pred CeeeeCCceeeeEEEEec--------CCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC-EEEEEeC
Q 018858 8 PRRLRGHKATATCCIASR--------DRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSS 78 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~--------~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 78 (349)
+..+.+|.+.|++++|+| + +++|++++.|++|+|||+.++..+..+..|..+|.+++|+|++. +|++++.
T Consensus 129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d-~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 207 (393)
T 4gq1_A 129 LGGKSGHHNFVNDIDIADVYSADNRLA-EQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER 207 (393)
T ss_dssp ECTTTSCSSCEEEEEEEEEECTTCSEE-EEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET
T ss_pred ecccCCCCCceEEEEEccccccccCCC-CCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC
Confidence 345789999999999998 5 78999999999999999998888888888999999999999875 7999999
Q ss_pred CCeEEEEEccCCCccccee----------------------eccCcccceEEEEEc-cCCCEEEEEcCCCcEEEEEcCCc
Q 018858 79 GKEVKSFDVHMPASWRPLE----------------------SYNYNKEEINQIVCN-PKSSFLACADDGGDVKIIDIRQH 135 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~----------------------~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~ 135 (349)
|+.|++||+++++...... ...+|...+.++.|. |+++.+++++.|+.+++||+..+
T Consensus 208 d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 208 NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 9999999998764322111 123466778889986 79999999999999999999988
Q ss_pred eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 136 CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
+....+. .+...+..+.+.|+...... ........+.+ ..++.++++|+.||.|++||+.++
T Consensus 288 ~~~~~l~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~----~~~~~~~~sgs~Dg~V~lwd~~~~- 349 (393)
T 4gq1_A 288 NDYNEIS-DSTMKLGPKNLLPNVQGISL------------FPSLLGACPHP----RYMDYFATAHSQHGLIQLINTYEK- 349 (393)
T ss_dssp -----------------CCSCSEEEECS------------SCCSSCCEECS----SCTTEEEEEETTTTEEEEEETTCT-
T ss_pred CCCceEe-eecCccccEEEccccccccc------------cCcceeEEEcc----CCCCEEEEEECCCCEEEEEECCCC-
Confidence 8777777 77777777777774211100 00011111111 114556778889999999999875
Q ss_pred eeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 216 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
.....+.+|..+|++++|+ |+|++||+++.|| +.+|.
T Consensus 350 ---------------------------------------~~~~~~~~~~~~V~svafs---pdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 350 ---------------------------------------DSNSIPIQLGMPIVDFCWH---QDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp ---------------------------------------TCCEEEEECSSCEEEEEEC---TTSSEEEEEESSE-EEEEE
T ss_pred ---------------------------------------cEEEEecCCCCcEEEEEEc---CCCCEEEEEeCCC-eEEEE
Confidence 3334455678899999999 9999999999766 55665
Q ss_pred cC
Q 018858 296 CS 297 (349)
Q Consensus 296 ~~ 297 (349)
+.
T Consensus 387 L~ 388 (393)
T 4gq1_A 387 LM 388 (393)
T ss_dssp EG
T ss_pred Ee
Confidence 54
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=8.5e-28 Score=203.80 Aligned_cols=224 Identities=13% Similarity=0.169 Sum_probs=178.8
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEE-EEEeCCCeEEEEEccCCCcccceeeccCcccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (349)
+.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.++.|++||+.+++.. ..+..+ ..+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~---~~~~~~-~~v 76 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI---ATVPAG-SSP 76 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE---EEEECS-SSE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE---EEEECC-CCc
Confidence 3578899999999999999999988888665 58999999999987 56678999999999876443 333323 489
Q ss_pred EEEEEccCCCEEE-EEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 107 NQIVCNPKSSFLA-CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 107 ~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
.+++|+|++++++ +++.++.|++||+.+++.+..+. +...+.+++|+|
T Consensus 77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~----------------------------- 125 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSP----------------------------- 125 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECT-----------------------------
T ss_pred cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECC-----------------------------
Confidence 9999999998775 55567999999999999888877 445689999999
Q ss_pred cccccCCCCcEE-EEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCC
Q 018858 186 DADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 264 (349)
Q Consensus 186 ~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 264 (349)
+++.+ ++++.++.|++||++++ +....+..+
T Consensus 126 -------dg~~l~~~~~~~~~v~~~d~~~~----------------------------------------~~~~~~~~~- 157 (391)
T 1l0q_A 126 -------DGKKLYVTNNGDKTVSVINTVTK----------------------------------------AVINTVSVG- 157 (391)
T ss_dssp -------TSSEEEEEETTTTEEEEEETTTT----------------------------------------EEEEEEECC-
T ss_pred -------CCCEEEEEeCCCCEEEEEECCCC----------------------------------------cEEEEEecC-
Confidence 67766 68888999999999875 233344434
Q ss_pred cceEEEEEeeecCCccEE-EEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee---CC
Q 018858 265 AAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD---TS 340 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d 340 (349)
..+..+.|+ |+++++ ++++.|+.|++||+.++ ..... ..+...+.+++|+| ++++|++++ .+
T Consensus 158 ~~~~~~~~~---~dg~~l~~~~~~~~~v~~~d~~~~---------~~~~~-~~~~~~~~~~~~~~-~g~~l~~~~~~~~~ 223 (391)
T 1l0q_A 158 RSPKGIAVT---PDGTKVYVANFDSMSISVIDTVTN---------SVIDT-VKVEAAPSGIAVNP-EGTKAYVTNVDKYF 223 (391)
T ss_dssp SSEEEEEEC---TTSSEEEEEETTTTEEEEEETTTT---------EEEEE-EECSSEEEEEEECT-TSSEEEEEEECSSC
T ss_pred CCcceEEEC---CCCCEEEEEeCCCCEEEEEECCCC---------eEEEE-EecCCCccceEECC-CCCEEEEEecCcCC
Confidence 346899999 899877 67788999999999986 33322 33566889999988 788888887 78
Q ss_pred CeEEEeeCC
Q 018858 341 KVVKVYSIS 349 (349)
Q Consensus 341 g~i~iw~~~ 349 (349)
+.|++||+.
T Consensus 224 ~~v~~~d~~ 232 (391)
T 1l0q_A 224 NTVSMIDTG 232 (391)
T ss_dssp CEEEEEETT
T ss_pred CcEEEEECC
Confidence 999999974
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2e-27 Score=204.23 Aligned_cols=280 Identities=11% Similarity=0.060 Sum_probs=203.8
Q ss_pred CceeeeEEE---EecCCCceEEE--------------eCCCCcEEEEEC--CCC--cEEEEeecCCCCeEEEEEecCCCE
Q 018858 14 HKATATCCI---ASRDRPGFVAS--------------SGEDGCICWFDL--RSK--DVQLVTDVGNGPVTSLCFKSGNED 72 (349)
Q Consensus 14 h~~~i~~~~---~~~~~~~~l~t--------------~~~dg~i~vwd~--~~~--~~~~~~~~~~~~v~~~~~~~~~~~ 72 (349)
....+..++ |+|+ ++.++. ++.++.+.+|.+ .++ +.+..+..+. .+.+++|+|++.+
T Consensus 59 ~~~g~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~ 136 (433)
T 3bws_A 59 KNIALVEMAIPVYKDE-KEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRL 136 (433)
T ss_dssp TTEEEEEEEEECCCTT-CCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEE
T ss_pred cCCccEEEEEeeccCC-CcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeE
Confidence 345677778 8887 444432 233443455544 334 4455666544 4568999997777
Q ss_pred EEEEeCCCeEEEEEccCCCccccee--eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccccccee
Q 018858 73 IIYVSSGKEVKSFDVHMPASWRPLE--SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICS 150 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 150 (349)
+++++.++.|++||+.+++....+. .+..|...+.+++|+|++.++++++.|+.|++||+++++.+..+. .+...+.
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~ 215 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD-LTGKWSK 215 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-CSSSSEE
T ss_pred EEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-CCCCCee
Confidence 7778888999999999875443222 345677889999999999999999999999999999999888888 7888999
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccCceeeeecCCCCCCccc
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
+++|+| +++.+ ++++.++.|++||+++++....... ...+.
T Consensus 216 ~~~~~~------------------------------------~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~ 257 (433)
T 3bws_A 216 ILLYDP------------------------------------IRDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPR 257 (433)
T ss_dssp EEEEET------------------------------------TTTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEEE
T ss_pred EEEEcC------------------------------------CCCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCce
Confidence 999999 67766 5556899999999998877665544 34578
Q ss_pred eeeeeccccEEEEeeeeee-------c----CceeeeeeeeecCCCcceEEEEEeeecCCccE-EEEeeCCCeEEEEecC
Q 018858 230 SQSTSKVNIRDAEMEILDQ-------S----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKY-LISGGNDKLVKVWDCS 297 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~-l~s~~~d~~i~vwd~~ 297 (349)
.++|+|+++.+++...... . .....+....+ .|...+.+++|+ |++++ +++++.|+.|++||+.
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~---~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSG---NTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEEC---SSTTEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEEC---CCCCEEEEEecCCCEEEEEECC
Confidence 9999999998886553211 1 11111222222 355678899999 88865 5667899999999999
Q ss_pred CCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeC---------------CCeEEEeeCC
Q 018858 298 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT---------------SKVVKVYSIS 349 (349)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------dg~i~iw~~~ 349 (349)
++ ..+... .+...+.+++|+| ++++|++++. ||.|++||+.
T Consensus 334 ~~---------~~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 334 EK---------KVQKSI-PVFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp TT---------EEEEEE-ECSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred CC---------cEEEEe-cCCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 86 333333 4677899999988 7888888875 5799999973
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=4.4e-28 Score=206.48 Aligned_cols=276 Identities=11% Similarity=-0.007 Sum_probs=203.3
Q ss_pred ceeeeEEEEecCCCceEEEeC----CCC----cEEEEEC--CCCcEE--EEeecCCCCeEEEEEec--------------
Q 018858 15 KATATCCIASRDRPGFVASSG----EDG----CICWFDL--RSKDVQ--LVTDVGNGPVTSLCFKS-------------- 68 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~----~dg----~i~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~-------------- 68 (349)
...+....|.+.+.+++++|+ .+| .+++||+ .+++.+ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 346777788888667787876 467 8999999 888876 45788888887777664
Q ss_pred CCCEEEEEeCC------CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC---cEEEEEcCCceEec
Q 018858 69 GNEDIIYVSSG------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG---DVKIIDIRQHCLYK 139 (349)
Q Consensus 69 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~ 139 (349)
.+..++.++.+ +.|++||+... .. ..+..|...+.+++|+|++++|++++.++ .|++||+++++..
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~---~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~- 216 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-NQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR- 216 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSC-SC---EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCC-CC---EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-
Confidence 15667766654 79999999743 22 33444678899999999999999998875 8999999988775
Q ss_pred eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE-EEcCCC--eEEEEEccCcee
Q 018858 140 SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDG--VVDVINIESELN 216 (349)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~ 216 (349)
.+. .+...+.+++|+| +++.|+ +++.++ .|++||+++++.
T Consensus 217 ~l~-~~~~~~~~~~~sp------------------------------------dg~~la~~~~~~g~~~i~~~d~~~~~~ 259 (415)
T 2hqs_A 217 QVA-SFPRHNGAPAFSP------------------------------------DGSKLAFALSKTGSLNLYVMDLASGQI 259 (415)
T ss_dssp EEE-CCSSCEEEEEECT------------------------------------TSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred Eee-cCCCcccCEEEcC------------------------------------CCCEEEEEEecCCCceEEEEECCCCCE
Confidence 444 5777899999999 788777 666555 499999988765
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeeecCc----e-eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC---
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----K-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND--- 288 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d--- 288 (349)
..... ....+..++|+|||+.+++....+.... . .......+..|...+.+++|+ |+|++|++++.+
T Consensus 260 ~~l~~--~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s---pdG~~l~~~~~~~g~ 334 (415)
T 2hqs_A 260 RQVTD--GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVS---SDGKFMVMVSSNGGQ 334 (415)
T ss_dssp EECCC--CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEEC---TTSSEEEEEEECSSC
T ss_pred EeCcC--CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEEC---CCCCEEEEEECcCCc
Confidence 43322 2356788999999999986543222110 0 011123344566788899999 899999988764
Q ss_pred CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCC---eEEEeeCC
Q 018858 289 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK---VVKVYSIS 349 (349)
Q Consensus 289 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw~~~ 349 (349)
..|++||+.++ .. ..+..+. .+.+++|+| ++++|++++.|+ .|++||+.
T Consensus 335 ~~i~~~d~~~~---------~~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 335 QHIAKQDLATG---------GV-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEEEEETTTC---------CE-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEECCCC---------CE-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC
Confidence 68999999986 33 2334443 889999988 888888888776 79999863
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=9.2e-27 Score=204.22 Aligned_cols=279 Identities=13% Similarity=0.090 Sum_probs=203.2
Q ss_pred EEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc--cCCCcccceeec
Q 018858 22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV--HMPASWRPLESY 99 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~ 99 (349)
+++|+ +.++++++.|++|.+||..+++++.++..+.. +..++|+|++++|++++.|+.|.+||+ .+++. +..+
T Consensus 144 ~~~p~-~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~---~~~i 218 (543)
T 1nir_A 144 DLDLP-NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK---VAEI 218 (543)
T ss_dssp CCCGG-GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE---EEEE
T ss_pred ccCCC-CEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE---EEEE
Confidence 48887 78899999999999999999999999884433 889999999999999999999999999 65533 3344
Q ss_pred cCcccceEEEEEcc----CCCEEEEEcC-CCcEEEEEcCCceEeceecccc-----------ccceeEEEEccCCCCCCC
Q 018858 100 NYNKEEINQIVCNP----KSSFLACADD-GGDVKIIDIRQHCLYKSLRAGH-----------SSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 100 ~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~ 163 (349)
. +...+..++|+| +++++++++. ++.|.+||..+++++..+. .+ ...+..+.++|+
T Consensus 219 ~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~-~~g~~~~~~~~~~~~~v~~i~~s~~------ 290 (543)
T 1nir_A 219 K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHE------ 290 (543)
T ss_dssp E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSS------
T ss_pred e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeec-ccCcccCccccccCCceEEEEECCC------
Confidence 3 235689999999 9999998884 8999999999999888776 32 125667777773
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
...++++...++.|.+||+.+...+.............++|+|+|+++++.
T Consensus 291 -----------------------------~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va 341 (543)
T 1nir_A 291 -----------------------------HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTA 341 (543)
T ss_dssp -----------------------------SSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEE
T ss_pred -----------------------------CCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEE
Confidence 345667777899999999987543331111234567789999999988754
Q ss_pred eeeeec----CceeeeeeeeecC----CCcceEEEEEeeecCC-ccEEEEee-CCCeEEEEecCCCcceecccccceeee
Q 018858 244 EILDQS----GGKRLHLDYSVGG----HTAAASCVAFSMFGER-GKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 244 ~~~~~~----~~~~~~~~~~~~~----h~~~i~~i~~~~~~~~-~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
...+.. .....++...+.. |.+....+ ++ |+ +.+++++. .|++|.+||+.+.... ....+.+..
T Consensus 342 ~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~---p~~g~~~~s~~~~d~~V~v~d~~~~~~~--~~~~~~v~~ 415 (543)
T 1nir_A 342 ANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VH---PKYGPVWSTSHLGDGSISLIGTDPKNHP--QYAWKKVAE 415 (543)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EE---TTTEEEEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEE
T ss_pred ecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CC---CCCccEEEeccCCCceEEEEEeCCCCCc--hhcCeEEEE
Confidence 432221 1112234444432 54433333 45 66 66777775 6899999999872100 000166777
Q ss_pred ccccccceEEEEeecCCCCcEEEee-------CCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCD-------TSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~iw~~~ 349 (349)
+..|...+..++++| ++++|++++ .+++|.+||+.
T Consensus 416 l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 416 LQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp EECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred EEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECC
Confidence 888888889999988 888999987 27899999974
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=6.3e-26 Score=198.92 Aligned_cols=295 Identities=11% Similarity=0.054 Sum_probs=213.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEEC--CCCcEEEEeecCCCCeEEEEEec----CCCEEEEEe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL--RSKDVQLVTDVGNGPVTSLCFKS----GNEDIIYVS 77 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~ 77 (349)
+++.++++..+.. +.+++|+|+ +++|++++.|+.|.+||+ .+++.+.++. +...+..++|+| +|+++++++
T Consensus 168 t~~~~~~i~~g~~-~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~ 244 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGA 244 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred CceEEEEEecCcc-cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEE
Confidence 5667788884333 889999998 899999999999999999 7888888888 455689999999 999999988
Q ss_pred C-CCeEEEEEccCCCcccceeecc-------Cc-ccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCceEec--eecccc
Q 018858 78 S-GKEVKSFDVHMPASWRPLESYN-------YN-KEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYK--SLRAGH 145 (349)
Q Consensus 78 ~-dg~i~iwd~~~~~~~~~~~~~~-------~~-~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~ 145 (349)
. +++|.+||..+++....+.... .| ...+..+.++|++. ++++...++.|.+||+.+.+.+. .+. +
T Consensus 245 ~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~ 322 (543)
T 1nir_A 245 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--A 322 (543)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--C
T ss_pred ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--c
Confidence 5 8999999998876555443311 01 23688999999764 55677789999999998765443 333 4
Q ss_pred ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE-cCCCeEEEEEccCceeeeecCCCC
Q 018858 146 SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTT 224 (349)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~ 224 (349)
...+..+.|+| ++++|+++ ..+++|.+||..+++.........
T Consensus 323 ~~~~~~~~~sp------------------------------------dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 323 APFLHDGGWDS------------------------------------SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp CSSCCCEEECT------------------------------------TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CcCccCceECC------------------------------------CCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 55678889998 78876654 568999999999988776554321
Q ss_pred C-Cccceee-eecc-ccEEEEeeeeeec----Ccee-------eeeeeeecCCCcceEEEEEeeecCCccEEEEee----
Q 018858 225 K-PLKGSQS-TSKV-NIRDAEMEILDQS----GGKR-------LHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---- 286 (349)
Q Consensus 225 ~-~~~~~~~-~~~~-~~~~~~~~~~~~~----~~~~-------~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~---- 286 (349)
. ..-+... ++|+ +..+++....+.. .... ++.+.++.+|...+..+.++ |++++|++++
T Consensus 367 ~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~---pdg~~l~v~~~~~~ 443 (543)
T 1nir_A 367 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH---PKSSHLYVDTTFNP 443 (543)
T ss_dssp SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC---TTCCEEEECCTTCS
T ss_pred CCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC---CCCCcEEEecCCCC
Confidence 1 1112222 4677 5544432211111 1112 67778888888888889999 9999999987
Q ss_pred ---CCCeEEEEecCCCcceecccccceee-----eccccccceEEEEeecCCCCcEEEee-----CCCeEEEeeC
Q 018858 287 ---NDKLVKVWDCSRFQGVQTSINNDLLI-----KNINLNKKVNWLCTTPTESENLVVCD-----TSKVVKVYSI 348 (349)
Q Consensus 287 ---~d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~iw~~ 348 (349)
.+++|.|||+.+.+... ..+. .+..+...+..++|+| +|+.|+++. .|+.|.|||.
T Consensus 444 ~~~~~~~v~v~d~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 444 DARISQSVAVFDLKNLDAKY-----QVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp SHHHHTCEEEEETTCTTSCC-----EEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEET
T ss_pred CcccCceEEEEECCCCCCCe-----EEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeEEEEEC
Confidence 26799999999985321 0100 0134577899999988 787777652 4799999995
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=4.4e-26 Score=194.15 Aligned_cols=226 Identities=10% Similarity=0.062 Sum_probs=180.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCC---cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEE-EEeCCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDG---CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII-YVSSGK 80 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg 80 (349)
+..++.+.+|...|.+++|+|+ +++|++++.++ .|++||+.+++.. .+..|...+.+++|+|+|++|+ +++.++
T Consensus 168 g~~~~~l~~~~~~v~~~~~Spd-g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g 245 (415)
T 2hqs_A 168 GYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTG 245 (415)
T ss_dssp SCSCEEEEEESSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred CCCCEEEeCCCCcceeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCC
Confidence 4567889999999999999998 88999888775 9999999988865 4666888999999999999888 566555
Q ss_pred --eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CC--cEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 81 --EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 81 --~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
.|++||+++++. ..+..+...+.+++|+|++++|++++. ++ .|++||+.+++.. .+. .+...+.+++|+
T Consensus 246 ~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~s 319 (415)
T 2hqs_A 246 SLNLYVMDLASGQI----RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQNQDADVS 319 (415)
T ss_dssp SCEEEEEETTTCCE----EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECC-CSSSEEEEEEEC
T ss_pred CceEEEEECCCCCE----EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEe-cCCCcccCeEEC
Confidence 599999987542 334456678999999999999988775 44 6888898877643 344 456678899999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC---CeEEEEEccCceeeeecCCCCCCccceee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
| ++++|++++.+ ..|.+||+.+++
T Consensus 320 p------------------------------------dG~~l~~~~~~~g~~~i~~~d~~~~~----------------- 346 (415)
T 2hqs_A 320 S------------------------------------DGKFMVMVSSNGGQQHIAKQDLATGG----------------- 346 (415)
T ss_dssp T------------------------------------TSSEEEEEEECSSCEEEEEEETTTCC-----------------
T ss_pred C------------------------------------CCCEEEEEECcCCceEEEEEECCCCC-----------------
Confidence 9 78888887754 589999998742
Q ss_pred eeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC---eEEEEecCCCcceecccccc
Q 018858 233 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~ 309 (349)
. ..+..|. .+.+++|+ |+|++|++++.|+ .|++||+.. .
T Consensus 347 -----------------------~-~~l~~~~-~~~~~~~s---pdg~~l~~~s~~~~~~~l~~~d~~g----------~ 388 (415)
T 2hqs_A 347 -----------------------V-QVLSSTF-LDETPSLA---PNGTMVIYSSSQGMGSVLNLVSTDG----------R 388 (415)
T ss_dssp -----------------------E-EECCCSS-SCEEEEEC---TTSSEEEEEEEETTEEEEEEEETTS----------C
T ss_pred -----------------------E-EEecCCC-CcCCeEEc---CCCCEEEEEEcCCCccEEEEEECCC----------C
Confidence 1 2344443 78899999 8999999988776 799999986 4
Q ss_pred eeeeccccccceEEEEeecC
Q 018858 310 LLIKNINLNKKVNWLCTTPT 329 (349)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~ 329 (349)
....+..|.+.|.+++|+|.
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp CEEECCCSSSEEEEEEECCC
T ss_pred cEEEeeCCCCCCcCCccccc
Confidence 55677889999999999883
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=7.6e-26 Score=207.33 Aligned_cols=279 Identities=10% Similarity=0.061 Sum_probs=196.6
Q ss_pred ceeeeEEEEecCCCceEEEeCC-CC-----cEEEEECCCCcEEEEeecCCC------------------------CeEEE
Q 018858 15 KATATCCIASRDRPGFVASSGE-DG-----CICWFDLRSKDVQLVTDVGNG------------------------PVTSL 64 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~-dg-----~i~vwd~~~~~~~~~~~~~~~------------------------~v~~~ 64 (349)
...|.+++|+|+ |++|++++. |+ .|++||+.+++....+..+.. .+..+
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456899999999 899998887 88 899999999987766655432 37889
Q ss_pred EEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc
Q 018858 65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG 144 (349)
Q Consensus 65 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 144 (349)
+|+|+|++|++++. +.|++||+.++.. .....+..+...+..++|+|+|++|++++. +.|++||+.+++...... .
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~-~ 190 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTA-D 190 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCC-C
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCc-ceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEecc-C
Confidence 99999999999986 9999999987620 012233445677999999999999998875 589999999887655443 2
Q ss_pred cccc----------------eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC----
Q 018858 145 HSSI----------------CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---- 204 (349)
Q Consensus 145 ~~~~----------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---- 204 (349)
+... +..++|+| +++.|++++.|+
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~Sp------------------------------------Dg~~l~~~~~d~~~~~ 234 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAP------------------------------------DDSAIAYARIDESPVP 234 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECT------------------------------------TSSCEEEEEEECTTSC
T ss_pred CccceeccccceeeeeccccccceEECC------------------------------------CCCEEEEEEEcCCCCc
Confidence 2221 46788888 677777665544
Q ss_pred -----------------------------eEEEEEccC-ceeeeecCC-CCCCccceeeeeccccEEEEeeeeee----c
Q 018858 205 -----------------------------VVDVINIES-ELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILDQ----S 249 (349)
Q Consensus 205 -----------------------------~i~i~d~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 249 (349)
.|.+||+.+ ++....... .....+..++| |||+.+++...... .
T Consensus 235 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~ 313 (741)
T 2ecf_A 235 VQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD 313 (741)
T ss_dssp EEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE
T ss_pred eEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE
Confidence 788899987 665443322 34556788999 99999986443111 1
Q ss_pred C----ceeeeeeeeecCCCc----ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 250 G----GKRLHLDYSVGGHTA----AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 250 ~----~~~~~~~~~~~~h~~----~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
+ .........+..+.. .+..+.|+ |||+++++++.|+.++||.++... . ...+..+...+
T Consensus 314 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s---pdg~~~~~~~~~g~~~l~~~~~~~--------~-~~~l~~~~~~v 381 (741)
T 2ecf_A 314 LVEVTLASNQQRVLAHETSPTWVPLHNSLRFL---DDGSILWSSERTGFQHLYRIDSKG--------K-AAALTHGNWSV 381 (741)
T ss_dssp EEEEETTTCCEEEEEEEECSSCCCCCSCCEEC---TTSCEEEEECTTSSCEEEEECSSS--------C-EEESCCSSSCE
T ss_pred EEEEECCCCceEEEEEcCCCCcCCcCCceEEC---CCCeEEEEecCCCccEEEEEcCCC--------C-eeeeeecceEE
Confidence 0 001122222222222 34678899 899999999999988888776321 4 44556677778
Q ss_pred EEE-EeecCCCCcEEE-eeCCC--eEEEeeC
Q 018858 322 NWL-CTTPTESENLVV-CDTSK--VVKVYSI 348 (349)
Q Consensus 322 ~~~-~~~~~~~~~l~~-~~~dg--~i~iw~~ 348 (349)
..+ .|+| +++.|+. ++.++ .++||++
T Consensus 382 ~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 382 DELLAVDE-KAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp EEEEEEET-TTTEEEEEECSSCTTCBEEEEE
T ss_pred EeEeEEeC-CCCEEEEEEeCCCCceEEEEEE
Confidence 887 4877 7776654 45555 8999975
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.5e-24 Score=179.65 Aligned_cols=279 Identities=9% Similarity=0.035 Sum_probs=186.5
Q ss_pred EEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEccCCCcccceeecc
Q 018858 22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDVHMPASWRPLESYN 100 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~ 100 (349)
.|.++.+..+++.+.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++.. ...+.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--~~~~~ 80 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--VVAIQ 80 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE--EEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee--EEecc
Confidence 4556545668888889999999999999988887777777 9999999997777665 889999999876541 22233
Q ss_pred CcccceEEEEEccCCCEEEEEcCCC---cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCc
Q 018858 101 YNKEEINQIVCNPKSSFLACADDGG---DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPA 177 (349)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (349)
.+.....+++|+|++++++++..++ .|++||+.+++.+..+. ......+++|+|
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~sp--------------------- 137 (331)
T 3u4y_A 81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISP--------------------- 137 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECT---------------------
T ss_pred cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECC---------------------
Confidence 3334444499999999999665553 89999999998888776 344568999999
Q ss_pred eeEEeecCcccccCCCCcEEE-EEcCCCe-EEEEEccCceeeee---cCCCCCCccceeeeeccccEEEEeeeeeecC--
Q 018858 178 FVHAIAIPDADMLDKTNKICV-VAKGDGV-VDVINIESELNISR---SKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-- 250 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~-~~~~dg~-i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 250 (349)
++++++ +...++. |.+|++........ ...........++|+|+|+++++....+..+
T Consensus 138 ---------------dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 202 (331)
T 3u4y_A 138 ---------------NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGI 202 (331)
T ss_dssp ---------------TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ---------------CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence 676454 4456678 99999875322211 1112234568899999999776543222111
Q ss_pred --ceeeee---eeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeec---cccccce
Q 018858 251 --GKRLHL---DYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKN---INLNKKV 321 (349)
Q Consensus 251 --~~~~~~---~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~v 321 (349)
....+. +..+.. ...+..++|+ |+|++++.++ .++.|.+||+.+++..... ...... .......
T Consensus 203 ~d~~~~~~~~~~~~~~~-~~~~~~~~~s---pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 203 LETQNPENITLLNAVGT-NNLPGTIVVS---RDGSTVYVLTESTVDVFNFNQLSGTLSFVK---SFGHGLLIDPRPLFGA 275 (331)
T ss_dssp EECSSTTSCEEEEEEEC-SSCCCCEEEC---TTSSEEEEECSSEEEEEEEETTTTEEEEEE---EEECCCCCCCGGGTTC
T ss_pred EECCCCcccceeeeccC-CCCCceEEEC---CCCCEEEEEEcCCCEEEEEECCCCceeeec---ccccccccCCCCcccc
Confidence 111122 344443 3566889999 8999776554 5788999999987431100 001111 1111223
Q ss_pred EEEEeecCCCCcEEEee-CCCeEEEeeCC
Q 018858 322 NWLCTTPTESENLVVCD-TSKVVKVYSIS 349 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~-~dg~i~iw~~~ 349 (349)
..++|+| ++++|++++ .++.|.+||++
T Consensus 276 ~~~~~sp-dg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 276 NQMALNK-TETKLFISANISRELKVFTIS 303 (331)
T ss_dssp CCEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred cceEECC-CCCEEEEecCCCCcEEEEEec
Confidence 5689988 787776665 56799999974
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=1.6e-24 Score=179.68 Aligned_cols=261 Identities=8% Similarity=0.040 Sum_probs=187.6
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCC--CeEEEEEecCCCEEEE-EeCCCeEEEEEccCCCcccceeecc--Ccc
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNG--PVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLESYN--YNK 103 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~--~~~ 103 (349)
++|++++.++.|.+||..+++.+..+..... .+..++|+|+++++++ +..++.|.+||+.+++....+..-. .+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 5789999999999999999998887764332 5788999999987654 5567899999998765433332210 012
Q ss_pred cceEEEEEccCCCEEEEEc------------CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 104 EEINQIVCNPKSSFLACAD------------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
..+..++|+|++++++++. .++.|.+||+.+++.+..+. ....+.+++|+|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~--------------- 144 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWAR--------------- 144 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECT---------------
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECC---------------
Confidence 2577899999999988885 57899999999988877776 345678889999
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee-----
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL----- 246 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 246 (349)
++++|+++ ++.|.+||+.+++......... ....+.++|+++.+++....
T Consensus 145 ---------------------dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~ 199 (337)
T 1pby_B 145 ---------------------DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS--WEAETYAQPDVLAVWNQHESSGVMA 199 (337)
T ss_dssp ---------------------TSSCEEEE--SSSEEEEETTTTEEEEEECSTT--TTTTTBCCCBCCCCCCCCTTTTEEE
T ss_pred ---------------------CCCEEEEe--CCeEEEEECCCCcEeeeeeccc--cCCCceeCCCccEEeeeccCCCcee
Confidence 78877777 6889999999887665443322 11234788888766532211
Q ss_pred -------------------------eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 247 -------------------------DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 247 -------------------------~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
+.... ... ...+..+...+.+++|+ |++++++++ ++.|++||+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~-~~~~~~~~~~~~~~~~s---~dg~~l~~~--~~~v~~~d~~~~~- 271 (337)
T 1pby_B 200 TPFYTARKDIDPADPTAYRTGLLTMDLETG-EMA-MREVRIMDVFYFSTAVN---PAKTRAFGA--YNVLESFDLEKNA- 271 (337)
T ss_dssp EEEEEEBTTSCTTSGGGEEEEEEEEETTTC-CEE-EEEEEECSSCEEEEEEC---TTSSEEEEE--ESEEEEEETTTTE-
T ss_pred eeeeccccccccccccccccceEEEeCCCC-Cce-EeecCCCCCceeeEEEC---CCCCEEEEe--CCeEEEEECCCCc-
Confidence 11100 001 12233455667889999 899999888 7999999998863
Q ss_pred eecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 302 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.... ....+.+++|+| ++++|++++.++.|++||+.
T Consensus 272 --------~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 272 --------SIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp --------EEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETT
T ss_pred --------Ccceec-CCCceeeEEECC-CCCEEEEEcCCCcEEEEECc
Confidence 332322 234678899988 88888888999999999973
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=2e-25 Score=181.63 Aligned_cols=239 Identities=9% Similarity=-0.015 Sum_probs=177.9
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-CcEEEEeecC-CCCeEEEEEecCCCEEEEEeC--CCeE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSS--GKEV 82 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~--dg~i 82 (349)
....+..|...|.+++|+|+ +++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++. ++..
T Consensus 33 ~~~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred ceeeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcc
Confidence 34566678899999999998 88888876 78999999998 8777666555 367889999999999999983 3455
Q ss_pred EEEEc--cCCCcccceeeccCcccceEEEEEccCCCEEE-EEcCCCcEEEEEcC--CceEeceeccccccceeEEEEccC
Q 018858 83 KSFDV--HMPASWRPLESYNYNKEEINQIVCNPKSSFLA-CADDGGDVKIIDIR--QHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 83 ~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
.||.+ .++. ...+..+ ..+..++|+|++++|+ ++..++.+++|++. +++. ..+. .+...+.+++|+|
T Consensus 111 ~l~~~~~~~~~----~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~s~- 182 (297)
T 2ojh_A 111 AIYLLPSTGGT----PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLT-HGEGRNDGPDYSP- 182 (297)
T ss_dssp EEEEEETTCCC----CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECC-CSSSCEEEEEECT-
T ss_pred eEEEEECCCCc----eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcc-cCCCccccceECC-
Confidence 55544 4332 2222222 3488899999999887 77788989999864 3433 4444 5677889999999
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
+++.|++++ .++.+++|++....
T Consensus 183 -----------------------------------dg~~l~~~~~~~~~~~i~~~~~~~--------------------- 206 (297)
T 2ojh_A 183 -----------------------------------DGRWIYFNSSRTGQMQIWRVRVDG--------------------- 206 (297)
T ss_dssp -----------------------------------TSSEEEEEECTTSSCEEEEEETTS---------------------
T ss_pred -----------------------------------CCCEEEEEecCCCCccEEEECCCC---------------------
Confidence 788777655 58899999886310
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC-----------CeEEEEecCCCcceecc
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-----------KLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~ 305 (349)
.....+..|...+..+.|+ |++++|++++.+ +.|++||+.+++.
T Consensus 207 ------------------~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~---- 261 (297)
T 2ojh_A 207 ------------------SSVERITDSAYGDWFPHPS---PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV---- 261 (297)
T ss_dssp ------------------SCEEECCCCSEEEEEEEEC---TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC----
T ss_pred ------------------CCcEEEecCCcccCCeEEC---CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc----
Confidence 2234455677788999999 899999888765 5699999988632
Q ss_pred cccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 306 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
..+....+|...+..++|+| ++++|++++.|
T Consensus 262 ---~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 262 ---ETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp ---EEEEEEEESTTTSCSCCBCT-TSSEEEEEEEC
T ss_pred ---eeeeccCCCCcccccceECC-CCCEEEEEEec
Confidence 22334446788899999988 78888888655
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=2.2e-24 Score=179.40 Aligned_cols=268 Identities=12% Similarity=0.090 Sum_probs=179.7
Q ss_pred eEEEeCCCCcEEEEECC-CCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCC-CeEEEEEcc--CCCcccceeeccCcc
Q 018858 30 FVASSGEDGCICWFDLR-SKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-KEVKSFDVH--MPASWRPLESYNYNK 103 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~ 103 (349)
++++++.++.|++||+. +++ .+..+ .+...+..++|+|++++|++++.+ +.|.+|++. +++ ...+..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~- 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-LTFAAESALP- 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-EEEEEEEECS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc-eeeccccccC-
Confidence 44555789999999985 333 23333 467788999999999999988876 899999997 332 2333344333
Q ss_pred cceEEEEEccCCCEEEEEc-CCCcEEEEEcC---CceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCcee
Q 018858 104 EEINQIVCNPKSSFLACAD-DGGDVKIIDIR---QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFV 179 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (349)
..+..++|+|+++++++++ .++.|++||+. ..+....+. ....+.+++|+|
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~----------------------- 138 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISP----------------------- 138 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECT-----------------------
T ss_pred CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECC-----------------------
Confidence 3788999999999876655 48889999994 444555554 334588889998
Q ss_pred EEeecCcccccCCCCcEEEEEc-CCCeEEEEEccC-ceeee----ecCCCCCCccceeeeeccccEEEEeeeeeecC---
Q 018858 180 HAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES-ELNIS----RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG--- 250 (349)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 250 (349)
+++.+++++ .++.|.+||+.+ ++... ............++|+|+++++++....+..+
T Consensus 139 -------------dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~ 205 (343)
T 1ri6_A 139 -------------DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVW 205 (343)
T ss_dssp -------------TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -------------CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 787777766 899999999987 43322 22223345667899999999876543221110
Q ss_pred -c----ee---eeeeeeecC-C--CcceEEEEEeeecCCccEEE-EeeCCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 251 -G----KR---LHLDYSVGG-H--TAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 251 -~----~~---~~~~~~~~~-h--~~~i~~i~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
. .. ......+.. + ...+..++|+ |++++|+ ++..|+.|++||+....... ..+.....+.
T Consensus 206 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s---~dg~~l~v~~~~~~~i~v~d~~~~~~~~-----~~~~~~~~~~ 277 (343)
T 1ri6_A 206 ELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT---PDGRHLYACDRTASLITVFSVSEDGSVL-----SKEGFQPTET 277 (343)
T ss_dssp ESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSCCE-----EEEEEEECSS
T ss_pred EecCCCCcEEEEeeccccCccccccCCccceEEC---CCCCEEEEEecCCCEEEEEEEcCCCCce-----EEeeeecCCC
Confidence 0 01 111111221 1 2356789999 8998777 45578999999998311000 2332333333
Q ss_pred cceEEEEeecCCCCcEEEee-CCCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~ 348 (349)
. +..++|+| ++++|++++ .++.|.+|++
T Consensus 278 ~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 278 Q-PRGFNVDH-SGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp S-CCCEEECT-TSSEEEEECTTTCEEEEEEE
T ss_pred c-cceEEECC-CCCEEEEecCCCCeEEEEEE
Confidence 3 88899988 788888877 6899999964
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.3e-25 Score=205.24 Aligned_cols=306 Identities=8% Similarity=-0.033 Sum_probs=190.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCC---CeEEEEEecCCCEEEEEeCC---------CeEEE
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG---PVTSLCFKSGNEDIIYVSSG---------KEVKS 84 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~i~i 84 (349)
.+.+++|+|+ ++++++ +.||.|++||+.+++....+..|.. .|.+++|+|+|++|++++.+ +.+.+
T Consensus 18 ~~~~~~~spd-g~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISD-TEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSS-SCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCC-CcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 4678899998 777766 6899999999999988777777664 49999999999999999764 78999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccc----------------
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI---------------- 148 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------- 148 (349)
||+.+++. ..+.....+...+..++|+|+|+.|+.++. +.|++||+.+++...... .+...
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEec
Confidence 99998754 334444444455889999999999999886 789999999887655544 33322
Q ss_pred --eeEEEEccCCCCCCCC--CCCCC-Cc-----cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee
Q 018858 149 --CSSVQFIPWKPWEGLP--ENNGN-AG-----QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218 (349)
Q Consensus 149 --v~~~~~~~~~~~~~~~--~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 218 (349)
+.+++|+|+|.++... +.... .. .......+..+.+.+ +|.. ..+..|++||+.+++...
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~G~~----~~~~~l~~~d~~~~~~~~ 242 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK------AGSE----NPSISLHVIGLNGPTHDL 242 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB------TTSC----CCEEEEEEEESSSSCCCE
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC------CCCC----CCeeEEEEEECCCCceeE
Confidence 3789999965544211 00000 00 000001123333333 2221 123489999998876433
Q ss_pred ecCCC-----CCCccceeeeeccccEEEEeeee---eecC----ceeeeeeeeecC-CCcce----EEEEEeeecCCccE
Q 018858 219 RSKST-----TKPLKGSQSTSKVNIRDAEMEIL---DQSG----GKRLHLDYSVGG-HTAAA----SCVAFSMFGERGKY 281 (349)
Q Consensus 219 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~-h~~~i----~~i~~~~~~~~~~~ 281 (349)
....+ ....+..++|+|||+++++.... +..+ ....+....+.. +...+ ..+.|+ |||+.
T Consensus 243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s---pdg~~ 319 (723)
T 1xfd_A 243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFS---KDGRK 319 (723)
T ss_dssp ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEEC---TTSCS
T ss_pred EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEc---CCCCe
Confidence 33322 14456789999999988653221 1110 001122222222 23333 378899 89997
Q ss_pred EEE--eeCCC------eEEEEe-cCCCcceecccccceeeeccccccceEE-EEeecCCCCcEEEeeCC---CeEEEeeC
Q 018858 282 LIS--GGNDK------LVKVWD-CSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTESENLVVCDTS---KVVKVYSI 348 (349)
Q Consensus 282 l~s--~~~d~------~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~d---g~i~iw~~ 348 (349)
|+. +..|+ .|++|| ...+.. .....+..+...+.. ++|+| +++.|+..+.+ +.+++|++
T Consensus 320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 320 FFFIRAIPQGGRGKFYHITVSSSQPNSSN-------DNIQSITSGDWDVTKILAYDE-KGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp EEEEEEECCSSSSCEEEEEEECSSCCSSS-------CCCCBSCCSSSCEEEEEEEET-TTTEEEEEESSSCTTCCEEEEE
T ss_pred EEEEEecccCCCcceeEEEEEeccCCCCc-------cceeEeecCCeEEEeeeEEcC-CCCEEEEEEcCCCCcceEEEEE
Confidence 764 44666 577777 344310 002223333334444 68988 88888766544 78999986
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=3.4e-24 Score=202.88 Aligned_cols=317 Identities=6% Similarity=-0.055 Sum_probs=220.8
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCC------CCcEEEEECCCCcEEEEeecCCCCe-------EEEEEecCCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGE------DGCICWFDLRSKDVQLVTDVGNGPV-------TSLCFKSGNE 71 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~------dg~i~vwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~ 71 (349)
+...+.|.+|...+.+++|||+ |++|++++. +..|++||+.+++ ...+..|...+ ..++|+|+|+
T Consensus 42 gg~~~~lt~~~~~v~~~~~SPD-G~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ 119 (1045)
T 1k32_A 42 SGSTRKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGN 119 (1045)
T ss_dssp TCCEEEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCC
T ss_pred CCcEEEeeeCCCcccCeEECCC-CCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCE
Confidence 4567889999999999999999 888887753 3479999998776 56777788877 8999999999
Q ss_pred EEEEEeCC------CeEEEEEccCCCcccc----------------------------------------------eeec
Q 018858 72 DIIYVSSG------KEVKSFDVHMPASWRP----------------------------------------------LESY 99 (349)
Q Consensus 72 ~l~~~~~d------g~i~iwd~~~~~~~~~----------------------------------------------~~~~ 99 (349)
.+++++.+ ..|.+|++..++.... ...+
T Consensus 120 ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l 199 (1045)
T 1k32_A 120 LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI 199 (1045)
T ss_dssp EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence 77777644 3688888765431110 0112
Q ss_pred cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEeceeccccccceeEEEEccCCCCCCCC-CCC--------CC
Q 018858 100 NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEGLP-ENN--------GN 169 (349)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~--------~~ 169 (349)
..|...+.++.|+++ ..+++++.++.+.+|.+.. +.....+. .+. .+...+|+|++.++... +.. ..
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~-~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT-SFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDTEK 276 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC-CCC-SSCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec-CCC-CcceeeEcCCCCEEEEEeCCEEEEecCCceE
Confidence 335566778888887 6667778888889998653 33344444 333 46678999998765321 100 00
Q ss_pred Ccccc------------CCceeEEeecC-cccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 170 AGQCY------------NPAFVHAIAIP-DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 170 ~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
..... ....+..++++ | +++.|++++ ++.|.+|+...+..... .......+..++|+ |
T Consensus 277 l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p------dG~~la~~~-~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 277 IEKIEIGDLESPEDRIISIPSKFAEDFSPL------DGDLIAFVS-RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp EEECCCCCCCBCCSEEEECGGGGEEEEEEC------GGGCEEEEE-TTEEEEECTTSSBEEEC-SCCSCEEEEEECSS-S
T ss_pred eeeeccCcccccccccccccccceeeecCC------CCCEEEEEE-cCEEEEEcCCCCceEEc-cCCCcceEEeeeEc-C
Confidence 00000 11246778888 8 899888887 78999999987654432 22222267889999 9
Q ss_pred ccEEEEeeeeeecCc---e-eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee
Q 018858 237 NIRDAEMEILDQSGG---K-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~---~-~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
|+.+++... +..+. . .......+.+|...+..++|+ |||++|++++.++.|++||+.++ ....
T Consensus 348 g~~l~~~s~-~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~S---pDG~~la~~~~~~~v~~~d~~tg---------~~~~ 414 (1045)
T 1k32_A 348 KVAFIHGTR-EGDFLGIYDYRTGKAEKFEENLGNVFAMGVD---RNGKFAVVANDRFEIMTVDLETG---------KPTV 414 (1045)
T ss_dssp EEEEEEEET-TEEEEEEEETTTCCEEECCCCCCSEEEEEEC---TTSSEEEEEETTSEEEEEETTTC---------CEEE
T ss_pred CCeEEEEEC-CCceEEEEECCCCCceEecCCccceeeeEEC---CCCCEEEEECCCCeEEEEECCCC---------ceEE
Confidence 998886432 11111 0 001122344677889999999 99999999999999999999987 4444
Q ss_pred eccccccceEEEEeecCCCCcEEEeeCC----------CeEEEeeCC
Q 018858 313 KNINLNKKVNWLCTTPTESENLVVCDTS----------KVVKVYSIS 349 (349)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~iw~~~ 349 (349)
...+|...+..++|+| ||++|++++.+ +.|++||+.
T Consensus 415 ~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 415 IERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 4557888899999988 89889888764 499999973
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=1e-23 Score=192.11 Aligned_cols=274 Identities=15% Similarity=0.040 Sum_probs=190.5
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC-----C
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-----P 90 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~ 90 (349)
..|.+++|+|+ +.++++. ++.|++||+.+++... +..+...+..++|+|+|++|+++ .++.|++||+.+ +
T Consensus 82 ~~v~~~~~spd-~~~~~~~--~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT--QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE--TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCC-CeEEEEE--CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 56999999998 6666664 4899999999887544 44466778899999999999985 589999999987 6
Q ss_pred CcccceeeccCccc--------------ceEEEEEccCCCEEEEEc---------------------------------C
Q 018858 91 ASWRPLESYNYNKE--------------EINQIVCNPKSSFLACAD---------------------------------D 123 (349)
Q Consensus 91 ~~~~~~~~~~~~~~--------------~v~~~~~~~~~~~l~~~~---------------------------------~ 123 (349)
+....... +.. .+.+++|+||+++|++++ .
T Consensus 157 ~~~~~~~~---~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~ 233 (706)
T 2z3z_A 157 RAIAVTID---GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH 233 (706)
T ss_dssp CCEESCSC---CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred CcEEeccC---CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence 43322211 112 147899999999999887 3
Q ss_pred CCcEEEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC
Q 018858 124 GGDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 202 (349)
Q Consensus 124 dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (349)
+..|++||+.+++...... ..+...+..++|+| +++.|++++.
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp------------------------------------dg~~l~~~~~ 277 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP------------------------------------DENILYVAEV 277 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT------------------------------------TSSEEEEEEE
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEEC------------------------------------CCCEEEEEEe
Confidence 4679999999887654432 13556788999999 7888888776
Q ss_pred CC-----eEEEEEccCc-eeeeecCCCCC---Cccceeeeec--cccEEEEeeeeeecC----ce-eeeeeeeecCCCcc
Q 018858 203 DG-----VVDVINIESE-LNISRSKSTTK---PLKGSQSTSK--VNIRDAEMEILDQSG----GK-RLHLDYSVGGHTAA 266 (349)
Q Consensus 203 dg-----~i~i~d~~~~-~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~----~~-~~~~~~~~~~h~~~ 266 (349)
++ .|.+||+.++ ........... ..+..++|+| ||+++++. ..++.. .. .......+..|...
T Consensus 278 ~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~ 356 (706)
T 2z3z_A 278 NRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS-RRDGWNHLYLYDTTGRLIRQVTKGEWE 356 (706)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE-CTTSSCEEEEEETTSCEEEECCCSSSC
T ss_pred CCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE-ccCCccEEEEEECCCCEEEecCCCCeE
Confidence 65 8999999987 33322211111 1246789999 99977643 222211 11 12334556667777
Q ss_pred eEE-EEEeeecCCccEEEEee-CCC----eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 267 ASC-VAFSMFGERGKYLISGG-NDK----LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 267 i~~-i~~~~~~~~~~~l~s~~-~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
+.. +.|+ |+++.|+.++ .++ .|+.||+.++ . ...+ .+...+..++|+| ++++++..+.+
T Consensus 357 v~~~~~~s---pdg~~l~~~~~~~~~~~~~l~~~d~~~~---------~-~~~l-~~~~~~~~~~~sp-dg~~l~~~~~~ 421 (706)
T 2z3z_A 357 VTNFAGFD---PKGTRLYFESTEASPLERHFYCIDIKGG---------K-TKDL-TPESGMHRTQLSP-DGSAIIDIFQS 421 (706)
T ss_dssp EEEEEEEC---TTSSEEEEEESSSCTTCBEEEEEETTCC---------C-CEES-CCSSSEEEEEECT-TSSEEEEEEEC
T ss_pred EEeeeEEc---CCCCEEEEEecCCCCceEEEEEEEcCCC---------C-ceec-cCCCceEEEEECC-CCCEEEEEecC
Confidence 776 7999 8998776555 444 6777777765 2 1122 3566788999988 78777766433
Q ss_pred ----CeEEEeeCC
Q 018858 341 ----KVVKVYSIS 349 (349)
Q Consensus 341 ----g~i~iw~~~ 349 (349)
+.|++||+.
T Consensus 422 ~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 422 PTVPRKVTVTNIG 434 (706)
T ss_dssp SSCSCEEEEEESS
T ss_pred CCCCcEEEEEECC
Confidence 569999863
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=2.5e-23 Score=173.42 Aligned_cols=254 Identities=9% Similarity=0.108 Sum_probs=171.4
Q ss_pred CCceeeeEEEEecCCCceEEEeC--CCCcEEEEECCCCcE--EEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEc
Q 018858 13 GHKATATCCIASRDRPGFVASSG--EDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDV 87 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~--~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 87 (349)
.+......++|+|+ +++++++. .++.|.+|++.+++. +..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 35566778999998 67444432 268999999977653 444455677888999999999998888 6799999999
Q ss_pred cCCCcccceeeccC---------cccceEEEEEccCCCEEEEEcCCCcEEEEEcC-CceEec--eeccccccceeEEEEc
Q 018858 88 HMPASWRPLESYNY---------NKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLYK--SLRAGHSSICSSVQFI 155 (349)
Q Consensus 88 ~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~~~~~~v~~~~~~ 155 (349)
........+..... ....+.+++|+|+++++++...++.|++|++. +++... .+.......+..++|+
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s 195 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS 195 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence 64322333333211 11247889999999977777778899999998 454322 2221123356778888
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE-EcCCCeEEEEEccC--ceeeeecCCCCCCccceee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIES--ELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~ 232 (349)
| +++++++ ...++.|.+|++.. ++...
T Consensus 196 p------------------------------------dg~~l~v~~~~~~~v~v~~~~~~~g~~~~-------------- 225 (347)
T 3hfq_A 196 P------------------------------------DGQYAFLAGELSSQIASLKYDTQTGAFTQ-------------- 225 (347)
T ss_dssp T------------------------------------TSSEEEEEETTTTEEEEEEEETTTTEEEE--------------
T ss_pred C------------------------------------CCCEEEEEeCCCCEEEEEEecCCCCceEE--------------
Confidence 8 7885555 56789999999874 21000
Q ss_pred eeccccEEEEeeeeeecCceeeeeeeeecC---CCcceEEEEEeeecCCccEEE-EeeCCCeEEEEecCCCcceeccccc
Q 018858 233 TSKVNIRDAEMEILDQSGGKRLHLDYSVGG---HTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINN 308 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~i~~i~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~ 308 (349)
......... ....+..++|+ |+|++|+ +...++.|.+|++......
T Consensus 226 ---------------------~~~~~~~~~~~~~~~~~~~i~~s---pdG~~l~v~~~~~~~v~v~~~~~~g~~------ 275 (347)
T 3hfq_A 226 ---------------------LGIVKTIPADYTAHNGAAAIRLS---HDGHFLYVSNRGYNTLAVFAVTADGHL------ 275 (347)
T ss_dssp ---------------------EEEEESSCTTCCSCCEEEEEEEC---TTSCEEEEEEETTTEEEEEEECGGGCE------
T ss_pred ---------------------eeeeeecCCCCCCCCcceeEEEC---CCCCEEEEEeCCCCEEEEEEECCCCcE------
Confidence 001111111 12457899999 8999874 5556899999999732111
Q ss_pred ceeeeccccccceEEEEeecCCCCcEEEeeC-CCeEEEeeC
Q 018858 309 DLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSI 348 (349)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~ 348 (349)
..+.....+...+..++|+| ++++|++++. ++.|.+|++
T Consensus 276 ~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 276 TLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred EEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEE
Confidence 33334445566788999988 8888888875 589999954
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=6.4e-23 Score=171.29 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=192.4
Q ss_pred ceeeeEEEEecCCCceEEEeCC-------CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEE
Q 018858 15 KATATCCIASRDRPGFVASSGE-------DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFD 86 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~-------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd 86 (349)
...+..++|+|+ ++++++++. ++.|.+||..+++.+..+... ..+..++|+|++++++++ ..++.|.+||
T Consensus 40 ~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 456788999998 677666653 568999999999988887753 447789999999966555 4579999999
Q ss_pred ccCCCcccceeeccCc------ccceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceeccccccceeEEEEccCC
Q 018858 87 VHMPASWRPLESYNYN------KEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (349)
.++++....+..-... ...+..++|+|+++++++++ .++.|.+||+.+++....+. .+...+.+++|+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~-- 194 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDS-- 194 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEET--
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECC--
Confidence 9987544333321100 01268899999998877665 47889999999999888776 5556688899999
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC---CCCccceeeeec
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSK 235 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 235 (349)
+++.+++++.++.|.+||+.+++........ .......++++|
T Consensus 195 ----------------------------------dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 195 ----------------------------------EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp ----------------------------------TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred ----------------------------------CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 7889999999999999999988776544332 234456799999
Q ss_pred cccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccce
Q 018858 236 VNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 236 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
+++.+++....+.. .....+....+.... ...+.|+ |++++++.++ .++.|.+||..++ +.
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s---~dg~~l~v~~~~~~~v~~~d~~~~---------~~ 306 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFN---PARNEAYVTHRQAGKVSVIDAKSY---------KV 306 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEE---TTTTEEEEEETTTTEEEEEETTTT---------EE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEEC---CCCCEEEEEECCCCeEEEEECCCC---------eE
Confidence 99988754322111 111222333333222 2568899 8998665554 7899999999987 33
Q ss_pred eeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 311 LIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
+.... ....+..++|+| ++++|+++..+
T Consensus 307 ~~~~~-~~~~~~~~~~s~-dg~~l~v~~~~ 334 (353)
T 3vgz_A 307 VKTFD-TPTHPNSLALSA-DGKTLYVSVKQ 334 (353)
T ss_dssp EEEEE-CCSEEEEEEECT-TSCEEEEEEEC
T ss_pred EEEEe-cCCCCCeEEEcC-CCCEEEEEEcc
Confidence 33332 334678999988 78777666544
No 141
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=2.1e-24 Score=184.38 Aligned_cols=210 Identities=15% Similarity=0.119 Sum_probs=155.7
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----------cEEEE-----eecCCCCeEEEEEecCCCEEE----E
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSK----------DVQLV-----TDVGNGPVTSLCFKSGNEDII----Y 75 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----------~~~~~-----~~~~~~~v~~~~~~~~~~~l~----~ 75 (349)
...+..++++++ +.++++++.++ +++|+.... ..+.. ...+...|.+++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345889999998 78899998887 888874210 11111 112567899999999999999 7
Q ss_pred EeCCCeEEEEEccCC--------CcccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccc
Q 018858 76 VSSGKEVKSFDVHMP--------ASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHS 146 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 146 (349)
++.|+.|++||+++. +....+..+.+|...|.+++|+|+ +.+|++++.||.|++||++++....... +|.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-~~~ 192 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-PST 192 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-CGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-CCC
Confidence 888999999998754 112234556678899999999998 7899999999999999999887766666 688
Q ss_pred cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC
Q 018858 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 226 (349)
Q Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 226 (349)
..+.+++|+| ++++|++|+.||.|++||.+. +.......+
T Consensus 193 ~~v~~v~wsp------------------------------------dg~~lasgs~dg~v~iwd~~~-~~~~~~~~~--- 232 (434)
T 2oit_A 193 VAVTSVCWSP------------------------------------KGKQLAVGKQNGTVVQYLPTL-QEKKVIPCP--- 232 (434)
T ss_dssp GCEEEEEECT------------------------------------TSSCEEEEETTSCEEEECTTC-CEEEEECCC---
T ss_pred CceeEEEEcC------------------------------------CCCEEEEEcCCCcEEEEccCC-cccccccCC---
Confidence 8999999999 799999999999999999983 111100000
Q ss_pred ccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCC------eEEEEecCCC
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDK------LVKVWDCSRF 299 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~------~i~vwd~~~~ 299 (349)
......|...|.++.|+ +++.++++.+ .|| .+++|++.+.
T Consensus 233 ------------------------------~~~~~~~~~~v~~v~w~---~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 233 ------------------------------PFYESDHPVRVLDVLWI---GTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ------------------------------TTCCTTSCEEEEEEEEE---ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ------------------------------cccCCCCceeEEEEEEe---cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 00011344589999999 7877775533 443 3999999875
Q ss_pred c
Q 018858 300 Q 300 (349)
Q Consensus 300 ~ 300 (349)
+
T Consensus 280 ~ 280 (434)
T 2oit_A 280 E 280 (434)
T ss_dssp T
T ss_pred C
Confidence 3
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.1e-23 Score=193.06 Aligned_cols=275 Identities=9% Similarity=-0.013 Sum_probs=191.6
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
..|.+++|+|+ +++|++++. +.|++||+.++. ....+..|...+..++|+|+|++|++++ ++.|++||+.+++..
T Consensus 109 ~~v~~~~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 109 TGIVDYQWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM 185 (741)
T ss_dssp EESCCCEECTT-SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred cCcceeEECCC-CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence 44889999999 888888876 899999999872 3445666788899999999999999988 568999999875432
Q ss_pred cceeeccCccc----------------ceEEEEEccCCCEEEEEcCCC--------------------------------
Q 018858 94 RPLESYNYNKE----------------EINQIVCNPKSSFLACADDGG-------------------------------- 125 (349)
Q Consensus 94 ~~~~~~~~~~~----------------~v~~~~~~~~~~~l~~~~~dg-------------------------------- 125 (349)
.... .+.. .+..++|+|||++|++++.|+
T Consensus 186 ~~~~---~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 186 QLTA---DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp ECCC---CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred Eecc---CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 2111 1111 147799999999999887665
Q ss_pred -cEEEEEcCC-ceEeceecc-ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC
Q 018858 126 -DVKIIDIRQ-HCLYKSLRA-GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 202 (349)
Q Consensus 126 -~i~i~d~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (349)
.|++||+.+ ++....... .+...+..++| | +++.|++++.
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p------------------------------------Dg~~l~~~~~ 305 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R------------------------------------DPQHLSFQRQ 305 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E------------------------------------ETTEEEEEEE
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-C------------------------------------CCCEEEEEEe
Confidence 788899888 765443321 25677888999 9 7888886653
Q ss_pred -----CCeEEEEEccCceeeeecCCCCCC---ccceeeeeccccEEEEeeeeeecCc-----eeeeeeeeecCCCcceEE
Q 018858 203 -----DGVVDVINIESELNISRSKSTTKP---LKGSQSTSKVNIRDAEMEILDQSGG-----KRLHLDYSVGGHTAAASC 269 (349)
Q Consensus 203 -----dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~i~~ 269 (349)
+..|++||+.+++........... .+..++|+|||+++++ +..++... .... ...+..|...+..
T Consensus 306 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~-~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~ 383 (741)
T 2ecf_A 306 SRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWS-SERTGFQHLYRIDSKGK-AAALTHGNWSVDE 383 (741)
T ss_dssp ETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEE-ECTTSSCEEEEECSSSC-EEESCCSSSCEEE
T ss_pred cccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEE-ecCCCccEEEEEcCCCC-eeeeeecceEEEe
Confidence 568999999987765544433322 3468999999996554 33232111 0112 4566677777888
Q ss_pred E-EEeeecCCccEEEE-eeCCC--eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC----C
Q 018858 270 V-AFSMFGERGKYLIS-GGNDK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS----K 341 (349)
Q Consensus 270 i-~~~~~~~~~~~l~s-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g 341 (349)
+ .|+ |+++.|+. ++.|+ .++||++.... .....+.. ...+..++|+| ++++|+....+ .
T Consensus 384 ~~~~s---~dg~~l~~~~~~~~~~~~~l~~~~~~g--------~~~~~l~~-~~~~~~~~~sp-dg~~l~~~~~~~~~p~ 450 (741)
T 2ecf_A 384 LLAVD---EKAGLAYFRAGIESARESQIYAVPLQG--------GQPQRLSK-APGMHSASFAR-NASVYVDSWSNNSTPP 450 (741)
T ss_dssp EEEEE---TTTTEEEEEECSSCTTCBEEEEEETTC--------CCCEECCC-SCSEEEEEECT-TSSEEEEEEEETTEEE
T ss_pred EeEEe---CCCCEEEEEEeCCCCceEEEEEEEcCC--------CCeeeccc-CCCceEEEECC-CCCEEEEEecCCCCCC
Confidence 7 599 89987754 45555 89999986421 22223333 55678899988 77777766433 4
Q ss_pred eEEEeeC
Q 018858 342 VVKVYSI 348 (349)
Q Consensus 342 ~i~iw~~ 348 (349)
.+.+|+.
T Consensus 451 ~~~l~~~ 457 (741)
T 2ecf_A 451 QIELFRA 457 (741)
T ss_dssp EEEEEET
T ss_pred eEEEEEc
Confidence 6777764
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=5.9e-23 Score=194.42 Aligned_cols=271 Identities=8% Similarity=-0.011 Sum_probs=203.5
Q ss_pred CceeeeEEEEe-cCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCC-CeEEEEEecCCCEEEEEeCCCeEE-EEEccCC
Q 018858 14 HKATATCCIAS-RDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG-PVTSLCFKSGNEDIIYVSSGKEVK-SFDVHMP 90 (349)
Q Consensus 14 h~~~i~~~~~~-~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~ 90 (349)
|...+.+++|+ |+ +++|++++ ++.|.+|+...++.. .+..|.. .+..++|+ +++.|++++.++.+. +|++..+
T Consensus 294 ~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~ 369 (1045)
T 1k32_A 294 SIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG 369 (1045)
T ss_dssp ECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred cccccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence 45579999999 98 88888877 789999999887754 4566777 89999999 999999999888888 9998865
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
+. ..+..+...+..++|+|++++|++++.++.|++||+.+++...... .|...+.+++|+|
T Consensus 370 ~~----~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~Sp-------------- 430 (1045)
T 1k32_A 370 KA----EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISD-------------- 430 (1045)
T ss_dssp CE----EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECT--------------
T ss_pred Cc----eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-CCCCCccceEECC--------------
Confidence 32 2222556789999999999999999999999999999998877776 6888899999999
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCC----------eEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG----------VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++++|++++.++ .|++||+.+++... ... .......++|+|||+.+
T Consensus 431 ----------------------DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~-l~~-~~~~~~~~~~spdG~~l 486 (1045)
T 1k32_A 431 ----------------------NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATT-ENSHDYAPAFDADSKNL 486 (1045)
T ss_dssp ----------------------TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSC-SSSBEEEEEECTTSCEE
T ss_pred ----------------------CCCeEEEEecCccccccCCCCCeEEEEECCCCcEEE-eeC-CCcccCCceEcCCCCEE
Confidence 789888877644 89999999876332 222 23446678999999998
Q ss_pred EEeeeeeec------Cc-------eee---------------------------------eeeeeecCCCcceEEEEEee
Q 018858 241 AEMEILDQS------GG-------KRL---------------------------------HLDYSVGGHTAAASCVAFSM 274 (349)
Q Consensus 241 ~~~~~~~~~------~~-------~~~---------------------------------~~~~~~~~h~~~i~~i~~~~ 274 (349)
++....... .. ... ..+..+..|.+.+..+.++
T Consensus 487 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s- 565 (1045)
T 1k32_A 487 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL- 565 (1045)
T ss_dssp EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEEC-
T ss_pred EEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEc-
Confidence 864331110 00 000 0112334466778999999
Q ss_pred ecCCccEEEE-------------eeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCC
Q 018858 275 FGERGKYLIS-------------GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK 341 (349)
Q Consensus 275 ~~~~~~~l~s-------------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 341 (349)
|+++++++ ...+..|++||+.+++ . ..+. ..+..++++| ||+.|++++.|
T Consensus 566 --~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~---------~-~~l~---~~v~~~~~S~-DG~~l~~~~~~- 628 (1045)
T 1k32_A 566 --ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---------V-TEVK---NNLTDLRLSA-DRKTVMVRKDD- 628 (1045)
T ss_dssp --SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---------E-EEEE---EEEEEEEECT-TSCEEEEEETT-
T ss_pred --CCCeEEEEecccCcccccccccCCCceEEEEECCCCc---------E-EEee---cCcceEEECC-CCCEEEEEcCC-
Confidence 89987875 1235678999998863 2 1121 5678899988 89999988876
Q ss_pred eEEEeeCC
Q 018858 342 VVKVYSIS 349 (349)
Q Consensus 342 ~i~iw~~~ 349 (349)
.|++||+.
T Consensus 629 ~i~~~d~~ 636 (1045)
T 1k32_A 629 GKIYTFPL 636 (1045)
T ss_dssp SCEEEEES
T ss_pred cEEEEeCc
Confidence 79999863
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=5.7e-23 Score=167.09 Aligned_cols=222 Identities=10% Similarity=0.112 Sum_probs=163.5
Q ss_pred EeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC-CCcccceeeccCc-ccceEEEE
Q 018858 33 SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-PASWRPLESYNYN-KEEINQIV 110 (349)
Q Consensus 33 t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~-~~~v~~~~ 110 (349)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.... ...+ ...+.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV---DTGFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC---CCTTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe---ccccccccccceE
Confidence 4567899999999988765 4445788999999999999999987 78999999987 543322 2222 35688999
Q ss_pred EccCCCEEEEEc--CCCcEEEE--EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCc
Q 018858 111 CNPKSSFLACAD--DGGDVKII--DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186 (349)
Q Consensus 111 ~~~~~~~l~~~~--~dg~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
|+|++++|++++ .++...+| ++.+++ ...+. ....+..++|+|
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~sp------------------------------ 138 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSP------------------------------ 138 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECT------------------------------
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECC------------------------------
Confidence 999999999988 33445555 544544 33343 233488889999
Q ss_pred ccccCCCCcEEE-EEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCc
Q 018858 187 ADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA 265 (349)
Q Consensus 187 ~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 265 (349)
+++.|+ ++..++.+++|+++... .....+..|..
T Consensus 139 ------dg~~l~~~~~~~~~~~l~~~~~~~---------------------------------------~~~~~~~~~~~ 173 (297)
T 2ojh_A 139 ------DGKSFTYCGIRDQVFDIYSMDIDS---------------------------------------GVETRLTHGEG 173 (297)
T ss_dssp ------TSSEEEEEEEETTEEEEEEEETTT---------------------------------------CCEEECCCSSS
T ss_pred ------CCCEEEEEECCCCceEEEEEECCC---------------------------------------CcceEcccCCC
Confidence 777766 77789999999975310 12234455677
Q ss_pred ceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC----
Q 018858 266 AASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS---- 340 (349)
Q Consensus 266 ~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---- 340 (349)
.+.++.|+ |++++|+.++ .|+.+++|++.... .....+..|...+..++|+| ++++|++++.+
T Consensus 174 ~~~~~~~s---~dg~~l~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 174 RNDGPDYS---PDGRWIYFNSSRTGQMQIWRVRVDG--------SSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVF 241 (297)
T ss_dssp CEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTS--------SCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCC
T ss_pred ccccceEC---CCCCEEEEEecCCCCccEEEECCCC--------CCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCC
Confidence 89999999 8999887666 58999999986321 34455667778899999988 88888888765
Q ss_pred -------CeEEEeeCC
Q 018858 341 -------KVVKVYSIS 349 (349)
Q Consensus 341 -------g~i~iw~~~ 349 (349)
+.|++||+.
T Consensus 242 ~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMD 257 (297)
T ss_dssp SCCSSEEEEEEEEETT
T ss_pred cccccCceEEEEEecC
Confidence 569999863
No 145
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=1.6e-22 Score=168.48 Aligned_cols=270 Identities=7% Similarity=-0.019 Sum_probs=177.0
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCC-CCeEEEEEecCCCEEEE-EeCCCeEEEEEccCCCccccee
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~ 97 (349)
.++++++ +.++++++.++.|++||..+++.+..+..+. ..+..++|+|+++++++ ...++.|.+||+.+++....+.
T Consensus 4 g~~~~~~-~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTT-CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCC-CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 3467776 7889999999999999999999888877543 25788999999987654 4568999999998764333322
Q ss_pred eccCc---ccceEEEEEccCCCEEEEEcCC------------CcEEEEEcCCceEe---ceeccccccceeEEEEccCCC
Q 018858 98 SYNYN---KEEINQIVCNPKSSFLACADDG------------GDVKIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 98 ~~~~~---~~~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ 159 (349)
.-... ...+..++|+|+++++++++.+ +.|.+||+.+++.. ..+. +...+.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~--- 157 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAAD--- 157 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECT---
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeECC---
Confidence 11000 2337889999999999988865 89999999875433 2333 334678888988
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC-------------
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP------------- 226 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------- 226 (349)
+++ +++++. .|.+||+.+++...........
T Consensus 158 ---------------------------------dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (349)
T 1jmx_B 158 ---------------------------------DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 201 (349)
T ss_dssp ---------------------------------TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred ---------------------------------CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeee
Confidence 777 555543 4999999887665543322100
Q ss_pred ----------ccceeeeeccccEEEEee-------eeeecCceeeeeeeeecCCCcceEEEEEeeecC-CccEEEEeeCC
Q 018858 227 ----------LKGSQSTSKVNIRDAEME-------ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGND 288 (349)
Q Consensus 227 ----------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~-~~~~l~s~~~d 288 (349)
....+++++++....... ..+... .... ...+..+...+..+.++ | ++++++++ +
T Consensus 202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~s---p~dg~~l~~~--~ 274 (349)
T 1jmx_B 202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT-GKTH-TQEFADLTELYFTGLRS---PKDPNQIYGV--L 274 (349)
T ss_dssp CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT-CCEE-EEEEEECSSCEEEEEEC---SSCTTEEEEE--E
T ss_pred cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccC-CcEE-ecccccCCCcceeeEec---CCCCCEEEEE--c
Confidence 112234443331110000 000000 0011 11122344567889999 8 99999888 8
Q ss_pred CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 289 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 289 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.|++||+.++ +.+.... ....+.+++|+| ++++|++++.++.|++||+.
T Consensus 275 ~~v~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 275 NRLAKYDLKQR---------KLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp SEEEEEETTTT---------EEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETT
T ss_pred CeEEEEECccC---------eEEEEEc-CCCCccceEECC-CCCEEEEecCCCeEEEEecc
Confidence 89999999987 3333322 234567899988 78888888889999999973
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=4.5e-23 Score=188.49 Aligned_cols=280 Identities=11% Similarity=0.043 Sum_probs=182.9
Q ss_pred cCCCCeeeeCCce---eeeEEEEecCCCceEEEeCCC---------CcEEEEECCCCcEEEEee---cCCCCeEEEEEec
Q 018858 4 AEAKPRRLRGHKA---TATCCIASRDRPGFVASSGED---------GCICWFDLRSKDVQLVTD---VGNGPVTSLCFKS 68 (349)
Q Consensus 4 ~~~~~~~l~~h~~---~i~~~~~~~~~~~~l~t~~~d---------g~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~ 68 (349)
+++..+.+.+|.. .|.+++|+|+ +++|++++.+ +.+++||+.+++. ..+. .|...+..++|+|
T Consensus 46 ~g~~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP 123 (723)
T 1xfd_A 46 TNTSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP 123 (723)
T ss_dssp GCCCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS
T ss_pred CCcEEEEeccccccccccceEEECCC-CCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC
Confidence 4455566666654 4999999999 8888888654 7888999998876 3333 3444588899999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCccc------------------ceEEEEEccCCCEEEEEcCCC-----
Q 018858 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKE------------------EINQIVCNPKSSFLACADDGG----- 125 (349)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~dg----- 125 (349)
+|+.|++++. +.|++||+.+++...... .+.. .+..++|+|||++|++++.++
T Consensus 124 dG~~la~~~~-~~i~~~~~~~g~~~~~~~---~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 199 (723)
T 1xfd_A 124 KGQQLIFIFE-NNIYYCAHVGKQAIRVVS---TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPI 199 (723)
T ss_dssp STTCEEEEET-TEEEEESSSSSCCEEEEC---CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCE
T ss_pred CCCEEEEEEC-CeEEEEECCCCceEEEec---CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccce
Confidence 9999999986 789999998765432221 1112 237899999999999887543
Q ss_pred -----------------------------cEEEEEcCCceEeceecccc------ccceeEEEEccCCCCCCCCCCCCCC
Q 018858 126 -----------------------------DVKIIDIRQHCLYKSLRAGH------SSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 126 -----------------------------~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
.|++||+.+++....+. .+ ...+..++|+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~-~~~~~~~~~~~~~~~~~Sp-------------- 264 (723)
T 1xfd_A 200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM-PPDDPRMREYYITMVKWAT-------------- 264 (723)
T ss_dssp EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC-CCCCGGGSSEEEEEEEESS--------------
T ss_pred EEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee-CCccCCCccceeEEEEEeC--------------
Confidence 57777776665433333 22 44566667776
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcC----CCeEEEEEccCceeeeecCCCCCCcc----ceeeeeccccEEEE
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----DGVVDVINIESELNISRSKSTTKPLK----GSQSTSKVNIRDAE 242 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 242 (349)
+++++++... +..|++||+.+++............+ ..++|+|||+.++.
T Consensus 265 ----------------------Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 265 ----------------------STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF 322 (723)
T ss_dssp ----------------------SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred ----------------------CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence 7888866543 35799999998776554332222222 47899999998876
Q ss_pred e-eeeee--------cCce--eeee---eeeecCCCcceEE-EEEeeecCCccEEEEeeCC---CeEEEEecCCCcceec
Q 018858 243 M-EILDQ--------SGGK--RLHL---DYSVGGHTAAASC-VAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQT 304 (349)
Q Consensus 243 ~-~~~~~--------~~~~--~~~~---~~~~~~h~~~i~~-i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~ 304 (349)
. ...+. .... .... ...+..+...+.. +.|+ |+|++|+..+.+ +.+++|++.....
T Consensus 323 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~s---pdg~~l~~~~~~~~~~~~~l~~~~~~~~--- 396 (723)
T 1xfd_A 323 IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD---EKGNKIYFLSTEDLPRRRQLYSANTVGN--- 396 (723)
T ss_dssp EEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE---TTTTEEEEEESSSCTTCCEEEEECSSTT---
T ss_pred EEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEc---CCCCEEEEEEcCCCCcceEEEEEeCCCC---
Confidence 4 32222 0000 1111 2333333334444 6899 899998766554 7899999875321
Q ss_pred ccccceeeeccc---cccceEEEEeecCCCCcEEEe
Q 018858 305 SINNDLLIKNIN---LNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 305 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~ 337 (349)
.....+.. |...+..++|+| ++++|+..
T Consensus 397 ----~~~~~l~~~~~~~~~~~~~~~sp-dg~~l~~~ 427 (723)
T 1xfd_A 397 ----FNRQCLSCDLVENCTYFSASFSH-SMDFFLLK 427 (723)
T ss_dssp ----CCCBCSSTTSSSSCCCCEEEECT-TSSEEEEE
T ss_pred ----CCcceecccccCCCCeEEEEECC-CCCEEEEE
Confidence 01112222 566788999988 77766654
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=7.4e-22 Score=163.40 Aligned_cols=247 Identities=11% Similarity=0.068 Sum_probs=167.6
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEE-EeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEEecCCCEEEEEeCCC-
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVA-SSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK- 80 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~-t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 80 (349)
+++....+..+...+ +++|+|+ +++++ ++..++.|.+||..+++. ...+..+..+..+++|+|++++++++..++
T Consensus 29 ~~~~~~~~~~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 106 (331)
T 3u4y_A 29 TLEILNQITLGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNH 106 (331)
T ss_dssp TCCEEEEEECCCCEE-EEEECSS-SCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSS
T ss_pred ccceeeeEEccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCC
Confidence 456666777666777 9999999 66554 555589999999999887 777777777666699999999999555442
Q ss_pred --eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEE-cCCCc-EEEEEcCCceEe-----ceeccccccceeE
Q 018858 81 --EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA-DDGGD-VKIIDIRQHCLY-----KSLRAGHSSICSS 151 (349)
Q Consensus 81 --~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~~~~~-----~~~~~~~~~~v~~ 151 (349)
.|.+||+++++.... +.. .....+++|+|++++++++ ..++. |.+|++.....+ ..+. .......
T Consensus 107 ~~~i~v~d~~~~~~~~~---~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~ 180 (331)
T 3u4y_A 107 PFNMQSYSFLKNKFIST---IPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFN 180 (331)
T ss_dssp SCEEEEEETTTTEEEEE---EEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEE
T ss_pred cccEEEEECCCCCeEEE---EEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccc
Confidence 899999987644332 322 3456899999999865544 55588 999998743222 1222 3345678
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccCcee---eeecCCCCCCc
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELN---ISRSKSTTKPL 227 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~ 227 (349)
++|+| +++++ +++..++.|.+||+.+++. ..... ....
T Consensus 181 ~~~sp------------------------------------dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~ 222 (331)
T 3u4y_A 181 ITFTP------------------------------------DGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNL 222 (331)
T ss_dssp EEECT------------------------------------TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSC
T ss_pred eEECC------------------------------------CCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCC
Confidence 88888 78755 4555789999999988765 44333 2356
Q ss_pred cceeeeeccccEEEEeeeeeecCc------eeeeeeeeecCC----Cc---ceEEEEEeeecCCccEEEEee-CCCeEEE
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGG------KRLHLDYSVGGH----TA---AASCVAFSMFGERGKYLISGG-NDKLVKV 293 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~h----~~---~i~~i~~~~~~~~~~~l~s~~-~d~~i~v 293 (349)
...++|+|+|+++++....+..+. .....+..+..+ .. ....++|+ |++++|++++ .++.|++
T Consensus 223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---pdg~~l~v~~~~~~~v~v 299 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN---KTETKLFISANISRELKV 299 (331)
T ss_dssp CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC---TTSSEEEEEETTTTEEEE
T ss_pred CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEEC---CCCCEEEEecCCCCcEEE
Confidence 678999999998765432221111 111112222211 12 22558999 8999886555 5679999
Q ss_pred EecCCC
Q 018858 294 WDCSRF 299 (349)
Q Consensus 294 wd~~~~ 299 (349)
||+...
T Consensus 300 ~d~~~~ 305 (331)
T 3u4y_A 300 FTISGK 305 (331)
T ss_dssp EETTSC
T ss_pred EEecCC
Confidence 999874
No 148
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.4e-22 Score=167.01 Aligned_cols=266 Identities=9% Similarity=0.054 Sum_probs=175.4
Q ss_pred CCceeeeEEEEecCCCceEEEeCCC-CcEEEEECC--CCcE--EEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGED-GCICWFDLR--SKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFD 86 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~d-g~i~vwd~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd 86 (349)
.|...+.+++|+|+ +++|++++.+ +.|.+|++. +++. +..+..+. .+..++|+|+++++++++. ++.|.+||
T Consensus 35 ~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 35 DVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp ECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 46778899999998 7877777765 999999997 5553 44555444 7889999999998877765 78999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCC-ceEec----eeccccccceeEEEEccCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQ-HCLYK----SLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+..+.....+..... ...+.+++|+|+++++++++ .++.|++||+.+ ++... .+.......+..++|+|
T Consensus 113 ~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---- 187 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP---- 187 (343)
T ss_dssp EETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT----
T ss_pred CCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC----
Confidence 953322333344333 24588899999999887776 889999999987 54432 22212334677888988
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE-EEcCCCeEEEEEccC--cee--eeec---CCC--CCCccce
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIES--ELN--ISRS---KST--TKPLKGS 230 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~--~~~--~~~~---~~~--~~~~~~~ 230 (349)
++++++ ++..++.|.+|++.. ++. .... ... .......
T Consensus 188 --------------------------------dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T 1ri6_A 188 --------------------------------NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 235 (343)
T ss_dssp --------------------------------TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred --------------------------------CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence 777665 445889999999954 221 1111 111 1234457
Q ss_pred eeeeccccEEEEeeeeeecC--------ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecC--CC
Q 018858 231 QSTSKVNIRDAEMEILDQSG--------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCS--RF 299 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~--~~ 299 (349)
++|+|+|+++++....+..+ ......+..+..+.. +..++|+ |++++|++++ .++.|.+|+++ ++
T Consensus 236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s---~dg~~l~~~~~~~~~v~v~~~d~~~g 311 (343)
T 1ri6_A 236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVD---HSGKYLIAAGQKSHHISVYEIVGEQG 311 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEEC---TTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEEC---CCCCEEEEecCCCCeEEEEEEcCCCc
Confidence 99999999887543222111 112233344444444 7899999 8999888877 68999999655 43
Q ss_pred cceecccccceeeeccccccceEEEEeecC
Q 018858 300 QGVQTSINNDLLIKNINLNKKVNWLCTTPT 329 (349)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 329 (349)
+. ..+.... ......+++|.+.
T Consensus 312 ~~-------~~~~~~~-~g~~p~~i~~~~~ 333 (343)
T 1ri6_A 312 LL-------HEKGRYA-VGQGPMWVVVNAH 333 (343)
T ss_dssp EE-------EEEEEEE-CSSSCCEEEEEEE
T ss_pred ee-------eEccccc-cCCCCeeEEEEcc
Confidence 21 1222221 2245667777763
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=4.5e-23 Score=176.17 Aligned_cols=217 Identities=14% Similarity=0.103 Sum_probs=155.3
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc-------ccceee-----ccCcccc
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-------WRPLES-----YNYNKEE 105 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~-----~~~~~~~ 105 (349)
+.+++|+... . .+...+..+++++++.++++++.++ +++|+...... ...+.. ...+...
T Consensus 23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 4577876431 1 1344678899999999999999888 89987642100 000100 0113457
Q ss_pred eEEEEEccCCCEEE----EEcCCCcEEEEEcCCc--------eE---eceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 106 INQIVCNPKSSFLA----CADDGGDVKIIDIRQH--------CL---YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 106 v~~~~~~~~~~~l~----~~~~dg~i~i~d~~~~--------~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
|.+++|+|++++|+ +|+.|+.|++||++++ +. +..+. +|...|.+++|+|+
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~------------- 160 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK-DAGGMVIDMKWNPT------------- 160 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC-SGGGSEEEEEECSS-------------
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC-CCCCceEEEEECCC-------------
Confidence 99999999999999 7889999999998754 11 34455 68899999999993
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 250 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
++.+|++++.||.|++||++++
T Consensus 161 ----------------------~~~~las~s~Dg~v~iwD~~~~------------------------------------ 182 (434)
T 2oit_A 161 ----------------------VPSMVAVCLADGSIAVLQVTET------------------------------------ 182 (434)
T ss_dssp ----------------------CTTEEEEEETTSCEEEEEESSS------------------------------------
T ss_pred ----------------------CCCEEEEEECCCeEEEEEcCCC------------------------------------
Confidence 3789999999999999999974
Q ss_pred ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec----cccccceEEEEe
Q 018858 251 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN----INLNKKVNWLCT 326 (349)
Q Consensus 251 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~ 326 (349)
.......+|...|++++|+ |+|++|++|+.||.|++||++ ++... .+... ..|...+.+++|
T Consensus 183 ----~~~~~~~~~~~~v~~v~ws---pdg~~lasgs~dg~v~iwd~~-~~~~~------~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 183 ----VKVCATLPSTVAVTSVCWS---PKGKQLAVGKQNGTVVQYLPT-LQEKK------VIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp ----EEEEEEECGGGCEEEEEEC---TTSSCEEEEETTSCEEEECTT-CCEEE------EECCCTTCCTTSCEEEEEEEE
T ss_pred ----cceeeccCCCCceeEEEEc---CCCCEEEEEcCCCcEEEEccC-Ccccc------cccCCcccCCCCceeEEEEEE
Confidence 2223345688899999999 899999999999999999998 32111 11111 124458999999
Q ss_pred ecCCCCcEEEe-eCCC------eEEEeeCC
Q 018858 327 TPTESENLVVC-DTSK------VVKVYSIS 349 (349)
Q Consensus 327 ~~~~~~~l~~~-~~dg------~i~iw~~~ 349 (349)
++ ++.++++. +.|| .+++|+++
T Consensus 249 ~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 249 IG-TYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp EE-TTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred ec-CceEEEEEccCCCccCCCCceEEEEec
Confidence 88 55555443 3443 38899874
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=4.3e-23 Score=183.87 Aligned_cols=232 Identities=11% Similarity=-0.025 Sum_probs=169.4
Q ss_pred ceeeeEEEEecCCCceEEEeCC-CCcEEEEECCCCcEEEEeecCC-CCeEEEEEecCCCEEEEEeC---CCeEEEEEccC
Q 018858 15 KATATCCIASRDRPGFVASSGE-DGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHM 89 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~ 89 (349)
..+|.+++|+|| |+.|++++. ||++.||+++.++.. .+..+. ..+..++|+|+ +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 567999999999 888888776 999999998666554 444444 68999999999 77777665 45556665543
Q ss_pred --CCcccceeeccCcccceEEEEEccCCCE-EEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 90 --PASWRPLESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 90 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
......+... ......+|+|+++. +++.+.++.+.+||+.+++...... +.. .+++|+|
T Consensus 98 ~~~g~~~~l~~~----~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~--~~~--~~~~~sp---------- 159 (582)
T 3o4h_A 98 SRPGEEQRLEAV----KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR--LPG--FGFVSDI---------- 159 (582)
T ss_dssp TSTTCCEECTTS----CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE--ESS--CEEEEEE----------
T ss_pred cCCCccccccCC----CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec--CCC--ceEEECC----------
Confidence 2112222221 23446688888853 3333344556699999887655444 222 7888999
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC----CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
+|+.++.++.+ +.|++||+.++
T Consensus 160 --------------------------DG~~la~~~~~~~~~~~i~~~d~~~g---------------------------- 185 (582)
T 3o4h_A 160 --------------------------RGDLIAGLGFFGGGRVSLFTSNLSSG---------------------------- 185 (582)
T ss_dssp --------------------------ETTEEEEEEEEETTEEEEEEEETTTC----------------------------
T ss_pred --------------------------CCCEEEEEEEcCCCCeEEEEEcCCCC----------------------------
Confidence 89999987766 78999998864
Q ss_pred eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC--eEEEEecCCCcceecccccceeeeccccccc
Q 018858 243 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
....+..|...+..++|+ |||++|+++..++ .|++||+.++ ... ....|...
T Consensus 186 -------------~~~~l~~~~~~~~~~~~S---pDG~~l~~~~~~~~~~i~~~d~~~~---------~~~-~~~~~~~~ 239 (582)
T 3o4h_A 186 -------------GLRVFDSGEGSFSSASIS---PGMKVTAGLETAREARLVTVDPRDG---------SVE-DLELPSKD 239 (582)
T ss_dssp -------------CCEEECCSSCEEEEEEEC---TTSCEEEEEECSSCEEEEEECTTTC---------CEE-ECCCSCSH
T ss_pred -------------CceEeecCCCccccceEC---CCCCEEEEccCCCeeEEEEEcCCCC---------cEE-EccCCCcC
Confidence 223566788889999999 9999999888888 8999999987 333 55566666
Q ss_pred eEEEE--------eecCCCCcEEEeeCCCeEEEeeC
Q 018858 321 VNWLC--------TTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 321 v~~~~--------~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+..++ |+| ||.++++++.|+.+++|++
T Consensus 240 ~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET
T ss_pred hhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE
Confidence 66666 988 7788888999999999985
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=6e-21 Score=159.90 Aligned_cols=249 Identities=14% Similarity=0.193 Sum_probs=166.4
Q ss_pred CceeeeEEEEecCCCceEEEeCCC----CcEEEEECCC--CcE--EEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEE
Q 018858 14 HKATATCCIASRDRPGFVASSGED----GCICWFDLRS--KDV--QLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKS 84 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~d----g~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i 84 (349)
|......++|+|+ +++|++++.+ +.|.+|++.. ++. +.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 5566778999998 7888888775 7999998865 433 3344445566777777 788887776 5789999
Q ss_pred EEccCCCcccceee---cc--------CcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceE------e------ce
Q 018858 85 FDVHMPASWRPLES---YN--------YNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCL------Y------KS 140 (349)
Q Consensus 85 wd~~~~~~~~~~~~---~~--------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------~------~~ 140 (349)
|++........+.. .. .+...+.+++|+|+++++++++ .++.|++|++..... + ..
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 99975433222211 11 1123457899999998665544 578999999874331 1 11
Q ss_pred eccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeee
Q 018858 141 LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISR 219 (349)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~ 219 (349)
........+..++|+| +++++++++ .++.|.+|++.++...
T Consensus 205 ~~~~~~~~~~~~~~sp------------------------------------dg~~l~v~~~~~~~v~v~~~~~g~~~-- 246 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNS------------------------------------DGKFAYLINEIGGTVIAFRYADGMLD-- 246 (361)
T ss_dssp EECCTTCCEEEEEECT------------------------------------TSSEEEEEETTTCEEEEEEEETTEEE--
T ss_pred eecCCCCCCeEEEEcC------------------------------------CCCEEEEEcCCCCeEEEEEecCCceE--
Confidence 1112345567888888 788776666 6899999999864210
Q ss_pred cCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC--CCeEEEEecC
Q 018858 220 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN--DKLVKVWDCS 297 (349)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~--d~~i~vwd~~ 297 (349)
....+.....+......++|+ |+|++|+++.. ++.|.+|++.
T Consensus 247 ---------------------------------~~~~~~~~~~~~~~~~~i~~s---pdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 247 ---------------------------------EIQTVAADTVNAQGSGDIHLS---PDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp ---------------------------------EEEEEESCSSCCCCEEEEEEC---TTSSEEEEEECSSSCEEEEEEEC
T ss_pred ---------------------------------EeEEEecCCCCCCCcccEEEC---CCCCEEEEECCCCCCEEEEEEEc
Confidence 001122233344456899999 99999877665 4899999996
Q ss_pred C--CcceecccccceeeeccccccceEEEEeecCCCCcEEEee-CCCeEEEeeC
Q 018858 298 R--FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 298 ~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~ 348 (349)
. ++. ..+..... ...+..++|+| ++++|++++ .++.|.+|++
T Consensus 291 ~~~g~~-------~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 291 ETNGTL-------TKVGYQLT-GIHPRNFIITP-NGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp TTTCCE-------EEEEEEEC-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEE
T ss_pred CCCCcE-------EEeeEecC-CCCCceEEECC-CCCEEEEEECCCCCEEEEEE
Confidence 3 321 12222222 45678899988 888888887 6799999764
No 152
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=1.1e-21 Score=165.97 Aligned_cols=291 Identities=12% Similarity=0.062 Sum_probs=187.3
Q ss_pred ccCCCCeeeeCCceeeeE-----EEEecCCCceEEEeCC-CC--cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEE
Q 018858 3 DAEAKPRRLRGHKATATC-----CIASRDRPGFVASSGE-DG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII 74 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~-----~~~~~~~~~~l~t~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 74 (349)
.++..++.|..|...... .+|+|+ +++|+.++. +| .|.+||+.+++.......+...+..++|+|+++.|+
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~ 96 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALF 96 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEE
T ss_pred CCCcceEEecCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEE
Confidence 456778888888766665 789999 787777766 66 488889998887776666665655678999999999
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCcccceEEE--EEccCCCEEEEE----------------------cCCCcEEEE
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI--VCNPKSSFLACA----------------------DDGGDVKII 130 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~----------------------~~dg~i~i~ 130 (349)
.++.++.|++||+.+++.... ... +...+... .++|++.+++.. ..+..|++|
T Consensus 97 ~~~~~~~l~~~d~~~g~~~~~-~~~--~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATLEENVV-YQV--PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEETTTEEEEEETTTCCEEEE-EEC--CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEeCCCeEEEEECCCCcceee-eec--hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 999999999999998754322 222 22333333 348899888742 234679999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC------CC
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG------DG 204 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg 204 (349)
|+.+++...... +...+..++|+|. +++.|+.... ..
T Consensus 174 d~~~g~~~~l~~--~~~~~~~~~~sp~-----------------------------------dg~~l~~~~~~~~~~~~~ 216 (388)
T 3pe7_A 174 DLKTGESTVILQ--ENQWLGHPIYRPY-----------------------------------DDSTVAFCHEGPHDLVDA 216 (388)
T ss_dssp ETTTCCEEEEEE--ESSCEEEEEEETT-----------------------------------EEEEEEEEECSCTTTSSC
T ss_pred ECCCCceEEeec--CCccccccEECCC-----------------------------------CCCEEEEEEecCCCCCcc
Confidence 999887544433 5567888999982 3566665544 33
Q ss_pred eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc----------eeeeeeeeecCCCcc---eEEEE
Q 018858 205 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----------KRLHLDYSVGGHTAA---ASCVA 271 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~h~~~---i~~i~ 271 (349)
.|.++|.................+..++|+|||+.+++....+.... .....+..+.++... ...+.
T Consensus 217 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 217 RMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp SEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred eEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 78888877654433333222234667899999998876443221110 011122222221000 11235
Q ss_pred EeeecCCccEEEEe---------eCCCeEEEEecCCCcceecccccceeeecccccc-----------ceEEEEeecCCC
Q 018858 272 FSMFGERGKYLISG---------GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-----------KVNWLCTTPTES 331 (349)
Q Consensus 272 ~~~~~~~~~~l~s~---------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~ 331 (349)
|+ |||+.|+.. ..+..|++||+.+++. ..+..+.. .+..++|+| ||
T Consensus 297 ~s---pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg 362 (388)
T 3pe7_A 297 MV---GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ----------HRVARHDTSWKVFEGDRQVTHPHPSFTP-DD 362 (388)
T ss_dssp EE---EEECCC------------CCCCEEEEEETTTTEE----------EEEEECCCCCCCBTTBSSTTCCCCEECT-TS
T ss_pred Ec---cCCCcceeEeeeccccccCCCCEEEEEeccCCce----------EEeccccCcccccccccccCCCCccCCC-CC
Confidence 78 899887754 4567899999998632 22333333 467789988 88
Q ss_pred CcEEEee-CCCeEEEeeC
Q 018858 332 ENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 332 ~~l~~~~-~dg~i~iw~~ 348 (349)
+.|+.++ .+|...||.+
T Consensus 363 ~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 363 KQILFTSDVHGKPALYLA 380 (388)
T ss_dssp SEEEEEECTTSSCEEEEE
T ss_pred CEEEEEecCCCceeEEEE
Confidence 7777665 5777777754
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=9.2e-22 Score=179.32 Aligned_cols=270 Identities=8% Similarity=-0.033 Sum_probs=174.9
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE-EEeecCC-----------------CCeEEEEEecCCCEEEEEeC
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-LVTDVGN-----------------GPVTSLCFKSGNEDIIYVSS 78 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~ 78 (349)
.+..+.|. . + .+++++.++ | +||+.+++.+ ..+..+. ..|.+++|+|+ +.++.+.
T Consensus 27 ~~~~~~w~-g-~-~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~- 99 (706)
T 2z3z_A 27 YVVGLQWM-G-D-NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT- 99 (706)
T ss_dssp -CTTCEEE-T-T-EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-
T ss_pred cCCCCcCc-C-C-eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-
Confidence 35567787 3 4 455556677 8 9999988762 3333222 56999999999 6666664
Q ss_pred CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-----ceEeceeccccccc-----
Q 018858 79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-----HCLYKSLRAGHSSI----- 148 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~----- 148 (349)
++.|++||+.+++.. .+..+...+..++|+|+|++|+++ .++.|++||+.+ ++...... .+...
T Consensus 100 ~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~ 173 (706)
T 2z3z_A 100 QGGLVGFDMLARKVT----YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI-DGTETLVYGQ 173 (706)
T ss_dssp TTEEEEEETTTTEEE----EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS-CCBTTEEESS
T ss_pred CCEEEEEECCCCceE----EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc-CCCCCeEccc
Confidence 599999999875322 122234568889999999999985 678999999988 76654443 22222
Q ss_pred ---------eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc------------------
Q 018858 149 ---------CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK------------------ 201 (349)
Q Consensus 149 ---------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------ 201 (349)
+.++.|+| ++++|++++
T Consensus 174 ~~~~ee~~~~~~~~~Sp------------------------------------Dg~~la~~~~d~~~~~~~~~~~~~~~~ 217 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSP------------------------------------KGSCLAFYRMDQSMVKPTPIVDYHPLE 217 (706)
T ss_dssp CCGGGCTTCCCSEEECT------------------------------------TSSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred chhhhhcCCCceEEECC------------------------------------CCCEEEEEEECCCCCceEEeeccCCCC
Confidence 47788888 677777765
Q ss_pred ---------------CCCeEEEEEccCceeeeecCC-CCCCccceeeeeccccEEEEeeeee------ec--Cceeeeee
Q 018858 202 ---------------GDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILD------QS--GGKRLHLD 257 (349)
Q Consensus 202 ---------------~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~ 257 (349)
.+..|.+||+.+++....... .....+..++|+|||+.+++..... .. ........
T Consensus 218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV 297 (706)
T ss_dssp CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence 446899999998775544332 3445678999999999888633211 00 00011011
Q ss_pred eeec--CCCc---ceEEEEEeeecC--CccEEEEeeCCCeEEEEecC-CCcceecccccceeeeccccccceEE-EEeec
Q 018858 258 YSVG--GHTA---AASCVAFSMFGE--RGKYLISGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNW-LCTTP 328 (349)
Q Consensus 258 ~~~~--~h~~---~i~~i~~~~~~~--~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~ 328 (349)
..+. .+.. .+..+.|+ | +|+++++++.|+.++||++. .+ ..+..+..+...+.. ++|+|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~s---p~~dg~~l~~~~~~g~~~l~~~~~~~---------~~~~~l~~~~~~v~~~~~~sp 365 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFL---PGSNNQFIWQSRRDGWNHLYLYDTTG---------RLIRQVTKGEWEVTNFAGFDP 365 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEEC---TTCSSEEEEEECTTSSCEEEEEETTS---------CEEEECCCSSSCEEEEEEECT
T ss_pred eEEEEccCCCeECccCCceee---cCCCCEEEEEEccCCccEEEEEECCC---------CEEEecCCCCeEEEeeeEEcC
Confidence 1111 1111 24678899 9 99999999999999999886 33 344555667777776 78988
Q ss_pred CCCCcEEEee-CCC----eEEEeeC
Q 018858 329 TESENLVVCD-TSK----VVKVYSI 348 (349)
Q Consensus 329 ~~~~~l~~~~-~dg----~i~iw~~ 348 (349)
+++.|+.++ .++ .|+.|++
T Consensus 366 -dg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 366 -KGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp -TSSEEEEEESSSCTTCBEEEEEET
T ss_pred -CCCEEEEEecCCCCceEEEEEEEc
Confidence 777666554 444 5666664
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=6.5e-22 Score=180.66 Aligned_cols=271 Identities=10% Similarity=0.013 Sum_probs=178.8
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCC---CeEEEEEecCCCEEEEEeC---------CCeEEEEEc
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG---PVTSLCFKSGNEDIIYVSS---------GKEVKSFDV 87 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~ 87 (349)
.++|+|+ +++++++ .|+.|++||+.+++....+..+.. .+.+++|||+|++|++++. ++.|++||+
T Consensus 20 ~~~~s~d-g~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISG-QEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSS-SEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCC-CeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 6799998 6666655 589999999999998777765543 4889999999999999876 689999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccce-----------------e
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC-----------------S 150 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-----------------~ 150 (349)
.+++.... ..+ ...+..++|+|||+.|+.+. ++.|++||+.+++.......++...+ .
T Consensus 98 ~~g~~~~~-~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 98 SNGEFVRG-NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTEECCS-SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCccccc-eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 87643110 111 24578899999999999885 67999999988766443221222212 4
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC--------------------------
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-------------------------- 204 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-------------------------- 204 (349)
+++|+| +|+.|++++.|.
T Consensus 173 ~~~wSP------------------------------------DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 173 ALWWSP------------------------------------NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp CEEECT------------------------------------TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred cEEECC------------------------------------CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 788888 677777665431
Q ss_pred --------eEEEEEccCceee---eecC----CCCCCccceeeeeccccEEEEeeeee-----ec--C----ceeeeeee
Q 018858 205 --------VVDVINIESELNI---SRSK----STTKPLKGSQSTSKVNIRDAEMEILD-----QS--G----GKRLHLDY 258 (349)
Q Consensus 205 --------~i~i~d~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~----~~~~~~~~ 258 (349)
.|++||+.+++.. .... ......+..++|+||++.+++..... .. . ....+...
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 7889999876542 1111 12344567899999987665421110 11 1 11122222
Q ss_pred ee----cCCCcceE-----EEEEeeecCCccEEEE--eeCCC--eEEEEecCCCcceecccccceeeeccccccceEEEE
Q 018858 259 SV----GGHTAAAS-----CVAFSMFGERGKYLIS--GGNDK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 325 (349)
Q Consensus 259 ~~----~~h~~~i~-----~i~~~~~~~~~~~l~s--~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 325 (349)
.+ .+|...+. .+.|+ |||+.++. +..++ .|++||+.++ . ...+..+...+..+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~s---pdg~~l~~~~~~~~g~~~l~~~~~~~~---------~-~~~lt~~~~~v~~~~ 363 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFS---YDAISYYKIFSDKDGYKHIHYIKDTVE---------N-AIQITSGKWEAINIF 363 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEEC---TTSSCEEEEEECTTSCEEEEEESSCST---------T-CEECSCSSSCEEEEE
T ss_pred EEecccccCCceEccccCCccEEC---CCCCeEEEEEEccCCceEEEEEECCCC---------c-eEecccCceEEEEEE
Confidence 33 35666666 78899 89985543 44555 5777787765 2 223344555677777
Q ss_pred eecCCCCcEEEeeC-----CCeEEEeeC
Q 018858 326 TTPTESENLVVCDT-----SKVVKVYSI 348 (349)
Q Consensus 326 ~~~~~~~~l~~~~~-----dg~i~iw~~ 348 (349)
++ +++.|+..+. ++..++|.+
T Consensus 364 ~~--d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 364 RV--TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp EE--CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EE--eCCEEEEEEecCCCCCceEEEEEE
Confidence 76 5556666554 488888875
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=2.7e-21 Score=160.23 Aligned_cols=258 Identities=13% Similarity=0.054 Sum_probs=168.6
Q ss_pred cCCCCeeeeCCce--eeeEEEEecCCCc-eEEEeCCCCcEEEEECCCCcEEEEeecCC-----CCeEEEEEecCCCEEEE
Q 018858 4 AEAKPRRLRGHKA--TATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGN-----GPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 4 ~~~~~~~l~~h~~--~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~ 75 (349)
+++.++.+..... .+.+++|+|+ ++ +++++..++.|.+||+.+++.+..+.... ..+..++|+|+++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 98 (337)
T 1pby_B 20 KMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI 98 (337)
T ss_dssp TTEEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred CCcEEEEEEcCCCCCCccceEEcCC-CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEE
Confidence 3455556653322 5788999999 55 45677778999999999998877666321 25678999999999988
Q ss_pred Ee------------CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc
Q 018858 76 VS------------SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA 143 (349)
Q Consensus 76 ~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 143 (349)
++ .++.|.+||+.+++....+.. ...+..++|+|++++++++ ++.|++||+.+++....+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~- 171 (337)
T 1pby_B 99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP- 171 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC-
T ss_pred EecccccccccccccCceEEEEECCCCcEEEEEeC----CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee-
Confidence 86 579999999987643332222 3457889999999988887 5789999999998877666
Q ss_pred ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcE----EEEEcCCC----------eEEEE
Q 018858 144 GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI----CVVAKGDG----------VVDVI 209 (349)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~dg----------~i~i~ 209 (349)
.+. ....+.|+|++..+..... .+.. ...+..++ .|.+|
T Consensus 172 ~~~-~~~~~~~s~dg~~l~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 224 (337)
T 1pby_B 172 IQS-WEAETYAQPDVLAVWNQHE--------------------------SSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp STT-TTTTTBCCCBCCCCCCCCT--------------------------TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred ccc-cCCCceeCCCccEEeeecc--------------------------CCCceeeeeeccccccccccccccccceEEE
Confidence 222 1123367774332210000 0111 11111111 58899
Q ss_pred EccCceeeeecCCCCCCccceeeeeccccEEEEeee-eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC
Q 018858 210 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 288 (349)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d 288 (349)
|+.+++...............++|+|+|+++++... .........+....+.. ...+.+++|+ |++++|++++.+
T Consensus 225 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s---~dg~~l~~~~~~ 300 (337)
T 1pby_B 225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPL-PHSYYSVNVS---TDGSTVWLGGAL 300 (337)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEEC-SSCCCEEEEC---TTSCEEEEESBS
T ss_pred eCCCCCceEeecCCCCCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecC-CCceeeEEEC---CCCCEEEEEcCC
Confidence 999876543222233345667999999999886410 00011111223333332 2457889999 899999999999
Q ss_pred CeEEEEecCCCc
Q 018858 289 KLVKVWDCSRFQ 300 (349)
Q Consensus 289 ~~i~vwd~~~~~ 300 (349)
+.|++||+.+++
T Consensus 301 ~~i~v~d~~~~~ 312 (337)
T 1pby_B 301 GDLAAYDAETLE 312 (337)
T ss_dssp SEEEEEETTTCC
T ss_pred CcEEEEECcCCc
Confidence 999999999874
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=1.1e-20 Score=158.42 Aligned_cols=253 Identities=11% Similarity=0.085 Sum_probs=166.8
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECC-CCcEEEEeecC-CCCeEEEEEecCCCE--EEEEe-------------
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLVTDVG-NGPVTSLCFKSGNED--IIYVS------------- 77 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~------------- 77 (349)
...+..++|+|+ +++|++++.+ .|.+|++. +++........ .+.+..++|+|+|++ ++++.
T Consensus 39 ~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 39 DEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 346788999998 8888888877 99999997 77664433211 123556899999995 44543
Q ss_pred CCCeEEEEEccC-CCcccceeecc-CcccceEEEEEccCCCEEEEEc-CCCcEEEEEcC-CceEe--ceecc-cccccee
Q 018858 78 SGKEVKSFDVHM-PASWRPLESYN-YNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIR-QHCLY--KSLRA-GHSSICS 150 (349)
Q Consensus 78 ~dg~i~iwd~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~--~~~~~-~~~~~v~ 150 (349)
.++.+.+|++.. ++....+..+. .+...+.+++|+|++++++++. .++.|++||+. +++.. ..+.. .+...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974 43322333221 1345789999999999887765 46789999998 66543 22320 1245688
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccC--ceeeeecCCCCCCc
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES--ELNISRSKSTTKPL 227 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~~~~~~~~~~~~ 227 (349)
.++|+| +++++++++ .++.|.+|++.. ++....
T Consensus 197 ~~~~sp------------------------------------dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~-------- 232 (365)
T 1jof_A 197 WVAMHP------------------------------------TGNYLYALMEAGNRICEYVIDPATHMPVYT-------- 232 (365)
T ss_dssp EEEECT------------------------------------TSSEEEEEETTTTEEEEEEECTTTCCEEEE--------
T ss_pred EeEECC------------------------------------CCCEEEEEECCCCeEEEEEEeCCCCcEEEc--------
Confidence 899999 788887766 478999998763 211000
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeeeee----cCCCc------ceEEEE-EeeecCCccEEEEeeCC-C-----e
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV----GGHTA------AASCVA-FSMFGERGKYLISGGND-K-----L 290 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~------~i~~i~-~~~~~~~~~~l~s~~~d-~-----~ 290 (349)
...+..+ .+|.. .+..++ |+ |||++|++++.+ . .
T Consensus 233 --------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s---pdG~~l~v~~~~~~~~~~~~ 283 (365)
T 1jof_A 233 --------------------------HHSFPLIPPGIPDRDPETGKGLYRADVCALT---FSGKYMFASSRANKFELQGY 283 (365)
T ss_dssp --------------------------EEEEESSCTTCCCBCTTTSSBSEEEEEEEEC---TTSSEEEEEEEESSTTSCCE
T ss_pred --------------------------cceEEcCCCCcCCcccccccccccccEEEEC---CCCCEEEEECCCCCCCCCCe
Confidence 0011111 12232 578999 99 899998876643 2 8
Q ss_pred EEEEecC-CCcceecccccceeeeccccccceEEEEeecC--CCCcEEEeeC-CCeEEEeeC
Q 018858 291 VKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNWLCTTPT--ESENLVVCDT-SKVVKVYSI 348 (349)
Q Consensus 291 i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~-dg~i~iw~~ 348 (349)
|.+|++. +++.. ........+...+..++|+|. ++++|++++. ++.|.+|++
T Consensus 284 i~v~~~~~~g~~~------~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 284 IAGFKLRDCGSIE------KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEEEECTTSCEE------EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EEEEEECCCCCEE------EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 9999996 44210 111012224445677888885 6888988875 599999985
No 157
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.6e-19 Score=150.64 Aligned_cols=238 Identities=8% Similarity=0.040 Sum_probs=169.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCc-eEEEeCCCCcEEEEECCCCcEEEEeecCCCC---------eEEEEEecCCCEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGNGP---------VTSLCFKSGNEDI 73 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l 73 (349)
+++.++.+.. ...+.+++|+|+ ++ ++++...++.|.+||..+++.+..+..+... +..++|+|+++++
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~s~d-g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 155 (353)
T 3vgz_A 78 TLEVTQAIHN-DLKPFGATINNT-TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTV 155 (353)
T ss_dssp TCCEEEEEEE-SSCCCSEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEE
T ss_pred CCeEEEEEec-CCCcceEEECCC-CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEE
Confidence 3444555553 344778899998 55 5666677899999999999988887765432 6889999999988
Q ss_pred EEEe--CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc---ccccc
Q 018858 74 IYVS--SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---GHSSI 148 (349)
Q Consensus 74 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~ 148 (349)
++++ .++.|.+||.++++.. ..+..+...+..++|+|+++++++++.++.|.+||+.+++....+.. ++...
T Consensus 156 ~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 232 (353)
T 3vgz_A 156 YISGIGKESVIWVVDGGNIKLK---TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHF 232 (353)
T ss_dssp EEEEESSSCEEEEEETTTTEEE---EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCC
T ss_pred EEEecCCCceEEEEcCCCCceE---EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcc
Confidence 7776 4789999999876433 33332344578899999999999999999999999999988877662 13445
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCc
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
+..++|+| +++.+++++ .++.|.+||+.+++.........
T Consensus 233 ~~~~~~s~------------------------------------dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--- 273 (353)
T 3vgz_A 233 FINISLDT------------------------------------ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--- 273 (353)
T ss_dssp EEEEEEET------------------------------------TTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---
T ss_pred cceEEECC------------------------------------CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---
Confidence 67789998 677666555 55999999999877665544332
Q ss_pred cceeeeeccccEEEEeeeeeecC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK 289 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~ 289 (349)
...++|+|+|+++++....+..+ ....+.+..+.. ...+..++|+ |+|++|+.+..++
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s---~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALS---ADGKTLYVSVKQK 335 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEEC---TTSCEEEEEEECC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEc---CCCCEEEEEEccc
Confidence 25699999999776543222211 112233334433 3467899999 8999777766553
No 158
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.86 E-value=8.5e-19 Score=144.70 Aligned_cols=243 Identities=9% Similarity=0.086 Sum_probs=172.9
Q ss_pred ceeeeEEEEecCCCceEEEeCCC------------------------CcEEEEECCCCcEEEEee-cCCCCeEEEEEecC
Q 018858 15 KATATCCIASRDRPGFVASSGED------------------------GCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSG 69 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~d------------------------g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~ 69 (349)
-+.+.+++++|+ ++++++...+ +.|.+||..+++.+..+. .+-..+..++++|+
T Consensus 23 l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 467999999998 7888887776 479999999888876654 34457899999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCC-cccceeec------cCcccceEEEEEcc-CCCEEEEEc-CCCcEEEEEcCCceEece
Q 018858 70 NEDIIYVSSGKEVKSFDVHMPA-SWRPLESY------NYNKEEINQIVCNP-KSSFLACAD-DGGDVKIIDIRQHCLYKS 140 (349)
Q Consensus 70 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~ 140 (349)
|+.+++...++.|++||..... ....+... ..+...+..++++| ++.++++.+ .++.|++|| .+++.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 9988888888999999976421 11111110 22334688999999 788888876 689999999 56666665
Q ss_pred ecc---------ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC-CcEEEEEcCCCeEEEEE
Q 018858 141 LRA---------GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT-NKICVVAKGDGVVDVIN 210 (349)
Q Consensus 141 ~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d 210 (349)
+.. .+-.....++++| + +.++++...++.|++||
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~------------------------------------~~g~l~v~d~~~~~I~~~~ 224 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVP------------------------------------HLDQLCVADRENGRIQCFK 224 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEET------------------------------------TTTEEEEEETTTTEEEEEE
T ss_pred eccCCCCCCCCCcccCCCcEEEEEC------------------------------------CCCEEEEEECCCCEEEEEE
Confidence 530 1112366777777 5 77788888899999999
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee--cCCCcceEEEEEeeecC------CccEE
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV--GGHTAAASCVAFSMFGE------RGKYL 282 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~i~~~~~~~------~~~~l 282 (349)
..+++ .+..+ ..+...+..++++ | +++..
T Consensus 225 ~~~G~----------------------------------------~~~~~~~~~~~~~~~~~~~~---pg~~~~~~g~~~ 261 (329)
T 3fvz_A 225 TDTKE----------------------------------------FVREIKHASFGRNVFAISYI---PGFLFAVNGKPY 261 (329)
T ss_dssp TTTCC----------------------------------------EEEEECCTTTTTCEEEEEEE---TTEEEEEECCCC
T ss_pred CCCCc----------------------------------------EEEEEeccccCCCcceeeec---CCEEEEeCCCEE
Confidence 98542 22222 2345567788887 6 33333
Q ss_pred EEeeCCCeEEEEecCCCcceecccccceeeec---cccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 283 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN---INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 283 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++...+..|++||..++ .++..+ ..+...+..++++| +|.++++...++.|++|++
T Consensus 262 v~~~~~~~v~~~~~~~g---------~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSG---------EIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp TTCSCCCCEEEEETTTC---------CEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEE
T ss_pred eccCCCcEEEEEEcCCC---------eEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeC
Confidence 33334568999999887 444443 35667789999988 7777777788999999985
No 159
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.86 E-value=2.8e-18 Score=138.84 Aligned_cols=238 Identities=11% Similarity=0.117 Sum_probs=167.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec------CCCCeEEEEEe-cCCCEEEEEeC-CCeEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV------GNGPVTSLCFK-SGNEDIIYVSS-GKEVKS 84 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~l~~~~~-dg~i~i 84 (349)
+|-....+++++++ ++++++...++.|.+||.. ++.+..+.. +...+..+++. ++++.+++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCC-CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 45567899999998 7888888888999999987 665555532 33568899995 66665555533 789999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc-ccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~ 163 (349)
||. +++....+. ..+...+..++++|+++++++...++.|++||.. ++.+..+.. .+...+..++++|
T Consensus 105 ~d~-~g~~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~------- 173 (286)
T 1q7f_A 105 YNQ-YGQFVRKFG--ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND------- 173 (286)
T ss_dssp ECT-TSCEEEEEC--TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-------
T ss_pred ECC-CCcEEEEec--CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-------
Confidence 994 443322221 1223568899999999988888888899999964 455444431 2334577888888
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
+++++++...++.|++||....
T Consensus 174 -----------------------------~g~l~v~~~~~~~i~~~~~~g~----------------------------- 195 (286)
T 1q7f_A 174 -----------------------------KQEIFISDNRAHCVKVFNYEGQ----------------------------- 195 (286)
T ss_dssp -----------------------------SSEEEEEEGGGTEEEEEETTCC-----------------------------
T ss_pred -----------------------------CCCEEEEECCCCEEEEEcCCCC-----------------------------
Confidence 7888888788999999998642
Q ss_pred eeeeecCceeeeeeeeec--CCCcceEEEEEeeecCCccEEEEeeCCC-eEEEEecCCCcceecccccceeeecccc--c
Q 018858 244 EILDQSGGKRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDK-LVKVWDCSRFQGVQTSINNDLLIKNINL--N 318 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~ 318 (349)
.+..+. ++...+..++++ ++|+++++...++ .|++||... ..+..+..+ .
T Consensus 196 ------------~~~~~~~~g~~~~p~~i~~d---~~G~l~v~~~~~~~~i~~~~~~g----------~~~~~~~~~~~~ 250 (286)
T 1q7f_A 196 ------------YLRQIGGEGITNYPIGVGIN---SNGEILIADNHNNFNLTIFTQDG----------QLISALESKVKH 250 (286)
T ss_dssp ------------EEEEESCTTTSCSEEEEEEC---TTCCEEEEECSSSCEEEEECTTS----------CEEEEEEESSCC
T ss_pred ------------EEEEEccCCccCCCcEEEEC---CCCCEEEEeCCCCEEEEEECCCC----------CEEEEEcccCCC
Confidence 122222 223567899999 8999888888776 999999654 233333322 2
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..+.++++.| +++++++ +.|+.|++|++
T Consensus 251 ~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 251 AQCFDVALMD-DGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp SCEEEEEEET-TTEEEEE-ETTTEEEEEEC
T ss_pred CcceeEEECC-CCcEEEE-CCCCeEEEEEc
Confidence 3477899988 7765555 67999999986
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=4.1e-20 Score=168.77 Aligned_cols=292 Identities=11% Similarity=0.073 Sum_probs=180.4
Q ss_pred CCCeeeeCCce---eeeEEEEecCCCceEEEeCC---------CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEE
Q 018858 6 AKPRRLRGHKA---TATCCIASRDRPGFVASSGE---------DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI 73 (349)
Q Consensus 6 ~~~~~l~~h~~---~i~~~~~~~~~~~~l~t~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 73 (349)
+..+.+.+|.. .|.+++|+|+ +++|++++. ++.|++||+.+++.+.... -...+..++|+|+|+.|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~l 124 (719)
T 1z68_A 47 QSYTILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKL 124 (719)
T ss_dssp CEEEEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCE
T ss_pred cEEEEEccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEE
Confidence 33344444433 3899999999 888888765 6899999999887521111 12568889999999999
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCccc-----------------ceEEEEEccCCCEEEEEcCCC-----------
Q 018858 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKE-----------------EINQIVCNPKSSFLACADDGG----------- 125 (349)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~l~~~~~dg----------- 125 (349)
+++. ++.|++|++.+++...... .++.. ....++|+|||++|++++.|.
T Consensus 125 a~~~-~~~i~~~~~~~g~~~~l~~--~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~ 201 (719)
T 1z68_A 125 AYVY-QNNIYLKQRPGDPPFQITF--NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYY 201 (719)
T ss_dssp EEEE-TTEEEEESSTTSCCEECCC--CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEEC
T ss_pred EEEE-CCeEEEEeCCCCCcEEEec--CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 9986 7899999998765432211 11111 124899999999999887542
Q ss_pred -----------------------cEEEEEcCCceEe--------ceeccccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 126 -----------------------DVKIIDIRQHCLY--------KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 126 -----------------------~i~i~d~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
.|++||+.+++.. ..+. .+...+..++|+|
T Consensus 202 ~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sp------------------ 262 (719)
T 1z68_A 202 GDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA-SSDYYFSWLTWVT------------------ 262 (719)
T ss_dssp CSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH-TSCEEEEEEEESS------------------
T ss_pred CCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC-CCcceEEEeEEeC------------------
Confidence 6889998877642 2233 4667788889988
Q ss_pred CCceeEEeecCcccccCCCCcEEEEEcCC----CeEEEEE----ccCceeeeecC---CCCCCccc-----eeeeecccc
Q 018858 175 NPAFVHAIAIPDADMLDKTNKICVVAKGD----GVVDVIN----IESELNISRSK---STTKPLKG-----SQSTSKVNI 238 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~ 238 (349)
+++++++.... ..|.+|| +.+++...... ......+. .+.|+|||+
T Consensus 263 ------------------D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 324 (719)
T 1z68_A 263 ------------------DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI 324 (719)
T ss_dssp ------------------SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred ------------------CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC
Confidence 77777664322 3588899 77766544442 22233344 789999999
Q ss_pred EEEEe-eeeeec----Cc-eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC----CCeEEEEecCC--Ccceeccc
Q 018858 239 RDAEM-EILDQS----GG-KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN----DKLVKVWDCSR--FQGVQTSI 306 (349)
Q Consensus 239 ~~~~~-~~~~~~----~~-~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~----d~~i~vwd~~~--~~~~~~~~ 306 (349)
.++.. ...++. .. ........+..+...+..+.+. .++.+++++.. ++..++|.+.. +....
T Consensus 325 ~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~---d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~--- 398 (719)
T 1z68_A 325 SYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV---TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSK--- 398 (719)
T ss_dssp CEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE---CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCE---
T ss_pred eEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE---eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCc---
Confidence 77642 111111 00 0001123344455567777665 34444444444 47888998764 21000
Q ss_pred ccceeee-ccccccceEEEEeecCCCCcEEE-eeCC--CeEEEeeC
Q 018858 307 NNDLLIK-NINLNKKVNWLCTTPTESENLVV-CDTS--KVVKVYSI 348 (349)
Q Consensus 307 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~-~~~d--g~i~iw~~ 348 (349)
..+.. +.+|...+..+.|+| ++++++. ++.+ ..+.+||+
T Consensus 399 --~~l~~~~~~~~~~~~~~~~s~-dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 399 --KCVTCHLRKERCQYYTASFSD-YAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp --EESSTTTTTTTBCBEEEEECG-GGSSEEEEECCBSSCEEEEECS
T ss_pred --eeccCccCCCCCceEEEEECC-CCCEEEEEcCCCCCCeEEEEEC
Confidence 11111 223666778888988 6666654 4333 46777775
No 161
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1.2e-18 Score=145.03 Aligned_cols=212 Identities=6% Similarity=0.080 Sum_probs=142.9
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeC-CCCcEEEEECC-CCc--EEEEeecC---------CCCeEEEEEecCCCEEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSG-EDGCICWFDLR-SKD--VQLVTDVG---------NGPVTSLCFKSGNEDII 74 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~-~dg~i~vwd~~-~~~--~~~~~~~~---------~~~v~~~~~~~~~~~l~ 74 (349)
+..+..|...+..++|+|+ +++|++++ .++.+.+|++. ++. .+..+... ...+.+++|+|+++.++
T Consensus 78 ~~~~~~~~~~p~~~a~spd-g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v 156 (347)
T 3hfq_A 78 LNTVVAPGTPPAYVAVDEA-RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV 156 (347)
T ss_dssp EEEEEEESCCCSEEEEETT-TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred eeeeecCCCCCEEEEECCC-CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence 3444556778899999999 78777666 77999999996 333 23333321 12488899999999666
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccC-cccceEEEEEccCCCEEEE-EcCCCcEEEEEcCC--ceE--eceeccccc--
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLAC-ADDGGDVKIIDIRQ--HCL--YKSLRAGHS-- 146 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~~-- 146 (349)
+...++.|.+|++.............. ....+..++|+|+++++++ +..++.|.+|++.. ++. +..+. ...
T Consensus 157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~ 235 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK-TIPAD 235 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SSCTT
T ss_pred EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee-ecCCC
Confidence 666788999999983222222222211 2236788999999996655 56788999999874 442 22222 111
Q ss_pred ----cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccCceeeeecC
Q 018858 147 ----SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 147 ----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
..+..++|+| ++++| ++...++.|.+|++...
T Consensus 236 ~~~~~~~~~i~~sp------------------------------------dG~~l~v~~~~~~~v~v~~~~~~------- 272 (347)
T 3hfq_A 236 YTAHNGAAAIRLSH------------------------------------DGHFLYVSNRGYNTLAVFAVTAD------- 272 (347)
T ss_dssp CCSCCEEEEEEECT------------------------------------TSCEEEEEEETTTEEEEEEECGG-------
T ss_pred CCCCCcceeEEECC------------------------------------CCCEEEEEeCCCCEEEEEEECCC-------
Confidence 3466778887 78877 45556899999999731
Q ss_pred CCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC-CCeEEEEecC
Q 018858 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCS 297 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~ 297 (349)
.....+..+..+...+..++|+ |+|++|++++. ++.|.+|+++
T Consensus 273 ------------------------------g~~~~~~~~~~~~~~~~~~~~s---pdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 273 ------------------------------GHLTLIQQISTEGDFPRDFDLD---PTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ------------------------------GCEEEEEEEECSSSCCCEEEEC---TTSSEEEEEETTTTEEEEEEEC
T ss_pred ------------------------------CcEEEeEEEecCCCCcCeEEEC---CCCCEEEEEEcCCCcEEEEEEe
Confidence 0113334445555667899999 89998888875 4899999553
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=6.1e-19 Score=146.82 Aligned_cols=134 Identities=10% Similarity=0.128 Sum_probs=98.7
Q ss_pred cCCCCeeeeCCc-eeeeEEEEecCCCce-EEEeCCCCcEEEEECCCCcEEEEeecCC------CCeEEEEEecCCCEEEE
Q 018858 4 AEAKPRRLRGHK-ATATCCIASRDRPGF-VASSGEDGCICWFDLRSKDVQLVTDVGN------GPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 4 ~~~~~~~l~~h~-~~i~~~~~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~ 75 (349)
+++.++.+..+. ..+..++|+|+ +++ ++++..++.|.+||+.+++.+..+..+. ..+..++|+|+|+++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 108 (349)
T 1jmx_B 30 SDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA 108 (349)
T ss_dssp TTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred CCcEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEE
Confidence 345556666443 25778999998 664 5566778999999999998877776432 23778999999999999
Q ss_pred EeCC------------CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 76 VSSG------------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 76 ~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
++.+ +.|.+||+.+++....+..... ...+.+++|+|+++ +++++. .|++||+.+++....+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 109 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALP 183 (349)
T ss_dssp EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEEC
T ss_pred EcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEccC--cEEEEeCCCCceecccc
Confidence 8865 8999999987544444443332 24688899999999 555544 49999999988777665
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=1.4e-19 Score=161.29 Aligned_cols=235 Identities=8% Similarity=-0.004 Sum_probs=163.0
Q ss_pred CCCeeeeCCc-eeeeEEEEecCCCceEEEeCC---CCcEEEEECCC---CcEEEEeecCCCCeEEEEEecCCCEE-EEEe
Q 018858 6 AKPRRLRGHK-ATATCCIASRDRPGFVASSGE---DGCICWFDLRS---KDVQLVTDVGNGPVTSLCFKSGNEDI-IYVS 77 (349)
Q Consensus 6 ~~~~~l~~h~-~~i~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~ 77 (349)
...+++..|. ..+.+++|+|+ +++++++. +....+|.+.. +... .+.. ...+...+|+|+++.+ ++.+
T Consensus 54 g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~ 129 (582)
T 3o4h_A 54 GETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGA 129 (582)
T ss_dssp TEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEE
T ss_pred CCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEec
Confidence 3455666666 68999999987 67776654 45455654432 3322 3332 2345567899988653 3333
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC----CcEEEEEcCCceEeceeccccccceeEEE
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG----GDVKIIDIRQHCLYKSLRAGHSSICSSVQ 153 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 153 (349)
.++.+.+||+.+++.. .+... .. .+++|+|||+++++++.+ +.|++||+.+++.. .+. .+...+..++
T Consensus 130 ~~~~~~l~d~~~g~~~-~l~~~---~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~-~~~~~~~~~~ 201 (582)
T 3o4h_A 130 TEDRVALYALDGGGLR-ELARL---PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD-SGEGSFSSAS 201 (582)
T ss_dssp CSSCEEEEEEETTEEE-EEEEE---SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC-CSSCEEEEEE
T ss_pred CCCCceEEEccCCcEE-EeecC---CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee-cCCCccccce
Confidence 4455669999876432 22221 12 789999999999988776 77999999888754 555 6778889999
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC--eEEEEEccCceeeeecCCCCCCcccee
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG--VVDVINIESELNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (349)
|+| +|+.|+++..++ .|++||+.+++
T Consensus 202 ~Sp------------------------------------DG~~l~~~~~~~~~~i~~~d~~~~~---------------- 229 (582)
T 3o4h_A 202 ISP------------------------------------GMKVTAGLETAREARLVTVDPRDGS---------------- 229 (582)
T ss_dssp ECT------------------------------------TSCEEEEEECSSCEEEEEECTTTCC----------------
T ss_pred ECC------------------------------------CCCEEEEccCCCeeEEEEEcCCCCc----------------
Confidence 999 899999888888 89999998752
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEE--------EeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA--------FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~--------~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
.. .+.+|...+..+. |+ |||.++++++.|+.+++|++ +
T Consensus 230 ------------------------~~-~~~~~~~~~~~~~~~~~~~~~~s---pdg~~~~~~~~~g~~~l~~~--g---- 275 (582)
T 3o4h_A 230 ------------------------VE-DLELPSKDFSSYRPTAITWLGYL---PDGRLAVVARREGRSAVFID--G---- 275 (582)
T ss_dssp ------------------------EE-ECCCSCSHHHHHCCSEEEEEEEC---TTSCEEEEEEETTEEEEEET--T----
T ss_pred ------------------------EE-EccCCCcChhhhhhccccceeEc---CCCcEEEEEEcCCcEEEEEE--C----
Confidence 11 3344544444444 88 89999999999999999999 4
Q ss_pred cccccceeeeccccccceEEEEeecCCCCcEEEeeCCC---eEEEeeC
Q 018858 304 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK---VVKVYSI 348 (349)
Q Consensus 304 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw~~ 348 (349)
+... .+.+.+.+++|+ +++++++++.+. .+++|++
T Consensus 276 -----~~~~---~~~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 276 -----ERVE---APQGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp -----EEEC---CCSSEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred -----Ceec---cCCCceEEEEec--CCEEEEEEcCCCCCCeEEEEcC
Confidence 3332 233578888886 778888887764 4666654
No 164
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.84 E-value=1.2e-17 Score=135.80 Aligned_cols=246 Identities=12% Similarity=0.036 Sum_probs=172.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCc-eEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
.+..+..+..+.....+++|+|+ ++ +++++..++.|..||..++ ...+..+...+.+++++++++++++...++.|
T Consensus 16 ~~~~~~~l~~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 16 AGAEARRLADGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp TTCCCEEEECCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred CCCcEEEEecCCccccCCeEeCC-CCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeE
Confidence 45567778777778899999999 66 7888888999999999877 56666677889999999999987777777899
Q ss_pred EEEEccCCCcccceeeccC-cccceEEEEEccCCCEEEE----Ec-------------CCCcEEEEEcCCceEeceeccc
Q 018858 83 KSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLAC----AD-------------DGGDVKIIDIRQHCLYKSLRAG 144 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~ 144 (349)
.+||..+++.......... ....+..++++|+|+++++ |+ ..+.|..++.. ++. ..+. .
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-~ 169 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI-R 169 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE-C
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee-c
Confidence 9999977653222221111 1134678999999998887 33 13456666654 443 2333 3
Q ss_pred cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-ceeeeecCCC
Q 018858 145 HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSKST 223 (349)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~ 223 (349)
+......++|+| +++.+++.+.++.|.+|++.. +...
T Consensus 170 ~~~~~~gi~~s~------------------------------------dg~~lv~~~~~~~i~~~~~~~~g~~~------ 207 (296)
T 3e5z_A 170 DRVKPNGLAFLP------------------------------------SGNLLVSDTGDNATHRYCLNARGETE------ 207 (296)
T ss_dssp CCSSEEEEEECT------------------------------------TSCEEEEETTTTEEEEEEECSSSCEE------
T ss_pred CCCCCccEEECC------------------------------------CCCEEEEeCCCCeEEEEEECCCCcCc------
Confidence 455667888888 788887777889999999872 2100
Q ss_pred CCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
..... +..+...+..++++ ++|+++++. ++.|++||...
T Consensus 208 ----------------------------~~~~~---~~~~~~~p~~i~~d---~~G~l~v~~--~~~v~~~~~~g----- 246 (296)
T 3e5z_A 208 ----------------------------YQGVH---FTVEPGKTDGLRVD---AGGLIWASA--GDGVHVLTPDG----- 246 (296)
T ss_dssp ----------------------------EEEEE---ECCSSSCCCSEEEB---TTSCEEEEE--TTEEEEECTTS-----
T ss_pred ----------------------------CCCeE---eeCCCCCCCeEEEC---CCCCEEEEc--CCeEEEECCCC-----
Confidence 00011 12244556789999 899877766 78999999874
Q ss_pred cccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEE
Q 018858 304 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 304 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 344 (349)
..+..+..+.. +++++|..++++.|++++.++..+
T Consensus 247 -----~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 247 -----DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS 281 (296)
T ss_dssp -----CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred -----CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence 44545555555 889999644888888888875443
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=8.3e-19 Score=160.36 Aligned_cols=263 Identities=9% Similarity=0.014 Sum_probs=160.6
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCC-----eEEEEEecCCCEEEEEeCC---------Ce
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP-----VTSLCFKSGNEDIIYVSSG---------KE 81 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------g~ 81 (349)
....++.|+|+ +++++++ |+.|++||+.+++....+..|... ...++|||||++|+.++.+ +.
T Consensus 17 ~~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISD-HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSS-SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCC-CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 34668899998 7888886 899999999999987777776533 2347899999999998875 56
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccc-------------
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI------------- 148 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------------- 148 (349)
+.+||+.+++.. .+..+...+...+|+|||+.||.+. ++.|++||+.+++..+.-..++...
T Consensus 94 ~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 94 YDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEEETTTTEEC----CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred EEEEECCCCcEE----EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 789999986432 2333456799999999999999884 6799999998776543211122221
Q ss_pred ----eeEEEEccCCCCCCCC--CCCCCC-ccc-------cCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-
Q 018858 149 ----CSSVQFIPWKPWEGLP--ENNGNA-GQC-------YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES- 213 (349)
Q Consensus 149 ----v~~~~~~~~~~~~~~~--~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 213 (349)
...+.|+|||.++... +..... -.. ........+.+.. .|.. .....|++||+.+
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~------~G~~----~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK------AGAV----NPTVKFFVVNTDSL 238 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB------TTSC----CCEEEEEEEETTSC
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC------CcCc----CCeeEEEEEECCCC
Confidence 2358899976655321 111000 000 0111222233322 1111 1122688899988
Q ss_pred --c---eeeeecCC----CCCCccceeeeeccccEEEEeeeeee---cCc----eeee----e--eeee--cCCCcceE-
Q 018858 214 --E---LNISRSKS----TTKPLKGSQSTSKVNIRDAEMEILDQ---SGG----KRLH----L--DYSV--GGHTAAAS- 268 (349)
Q Consensus 214 --~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~----~--~~~~--~~h~~~i~- 268 (349)
+ +....... .....+..++|+|||+.++....... .+. ...+ + ...+ .+|...+.
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~ 318 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR 318 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc
Confidence 6 32222211 13455778999999997664222111 000 0001 1 1112 33544443
Q ss_pred ----EEEEeeecCCccEEE-EeeC-C--CeEEEEecCCC
Q 018858 269 ----CVAFSMFGERGKYLI-SGGN-D--KLVKVWDCSRF 299 (349)
Q Consensus 269 ----~i~~~~~~~~~~~l~-s~~~-d--~~i~vwd~~~~ 299 (349)
...|+ |||+.++ ..+. + ..|++||+..+
T Consensus 319 ~~~~~p~fs---pDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 319 FRPSEPHFT---LDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp SSCCCCEEC---TTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CcCCCceEc---CCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 67899 8999776 6653 3 46888898875
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=1.8e-19 Score=152.77 Aligned_cols=286 Identities=12% Similarity=0.072 Sum_probs=174.8
Q ss_pred cCCCCeeeeCCcee-----eeEEEEecCCCceEEEeCC---CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE
Q 018858 4 AEAKPRRLRGHKAT-----ATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 4 ~~~~~~~l~~h~~~-----i~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 75 (349)
+++.++.|..+... +.+++|+|+ +++|+.... +..|.+||+.+++.......+......+.|+|+|++|+.
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~ 97 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQD-GKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFY 97 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEE
T ss_pred CCcceEEEecCCCCccceeeecCcCCCC-CCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEE
Confidence 45566777665443 788899999 777665533 246888899888765443333322333789999999999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCcccceEE-------------------EEEccCCCEEEEE-----cCCCcEEEEE
Q 018858 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ-------------------IVCNPKSSFLACA-----DDGGDVKIID 131 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~i~d 131 (349)
++.++.|++||+.+++.. .+.... ...... ..|+|+++.++.. ..+..|++||
T Consensus 98 ~~~~~~l~~~d~~~~~~~-~~~~~~--~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d 174 (396)
T 3c5m_A 98 VKNELNLMKVDLETLEEQ-VIYTVD--EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVD 174 (396)
T ss_dssp EETTTEEEEEETTTCCEE-EEEECC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEE
T ss_pred EEcCCcEEEEECCCCCcE-EEEecc--cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEE
Confidence 999999999999876432 222211 111111 3457777766654 3556799999
Q ss_pred cCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC------Ce
Q 018858 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD------GV 205 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~ 205 (349)
+.+++...... +...+..+.|+|+ +++.|+..+.+ ..
T Consensus 175 ~~~g~~~~~~~--~~~~~~~~~~sp~-----------------------------------dg~~l~~~~~~~~~~~~~~ 217 (396)
T 3c5m_A 175 IETGELEVIHQ--DTAWLGHPIYRPF-----------------------------------DDSTVGFCHEGPHDLVDAR 217 (396)
T ss_dssp TTTCCEEEEEE--ESSCEEEEEEETT-----------------------------------EEEEEEEEECSCSSSCSCC
T ss_pred CCCCcEEeecc--CCcccccceECCC-----------------------------------CCCEEEEEecCCCCCCCce
Confidence 98877654443 5567888899983 35555554433 46
Q ss_pred EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc--------eeeeeeeeecCCCcceEEEEEeeecC
Q 018858 206 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG--------KRLHLDYSVGGHTAAASCVAFSMFGE 277 (349)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~i~~i~~~~~~~ 277 (349)
|.+||+..+.............+..++|+|+|+.+++......... ..... ..+.... ... +.|+ |
T Consensus 218 l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~-~~~-~~~s---~ 291 (396)
T 3c5m_A 218 MWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-EEVMVMP-PCS-HLMS---N 291 (396)
T ss_dssp CEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-EEEEECC-SEE-EEEE---C
T ss_pred EEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-EEeeeCC-CCC-CCcc---C
Confidence 8888987654333332211335677899999998876543221111 00111 1111111 123 7888 7
Q ss_pred -CccEEEEee----------------CCCeEEEEecCCCcceecccccceeeecccccc-----------ceEEEEeecC
Q 018858 278 -RGKYLISGG----------------NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-----------KVNWLCTTPT 329 (349)
Q Consensus 278 -~~~~l~s~~----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~ 329 (349)
+|+++++++ .+..|++||+.+++. ..+..+.. .+..++|+|
T Consensus 292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~s~- 360 (396)
T 3c5m_A 292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA----------QKLCKHSTSWDVLDGDRQITHPHPSFTP- 360 (396)
T ss_dssp SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC----------CEEEECCCCCCCBTTBSSTTCCCCEECT-
T ss_pred CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce----------EEccCCCCccccccccccCCCCCceEcc-
Confidence 999888754 347899999987632 12222322 245677877
Q ss_pred CCCcEEEee-CCCeEEEee
Q 018858 330 ESENLVVCD-TSKVVKVYS 347 (349)
Q Consensus 330 ~~~~l~~~~-~dg~i~iw~ 347 (349)
+++.|+.++ .++...+|.
T Consensus 361 dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 361 NDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp TSSEEEEEECTTSSCEEEE
T ss_pred CCCeEEEEecCCCCceEEE
Confidence 787777765 456555654
No 167
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.5e-17 Score=139.29 Aligned_cols=246 Identities=12% Similarity=0.128 Sum_probs=151.2
Q ss_pred ceEEEe----CCCCcEEEEEC--CCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC----CeEEEEEccCC-Cccccee
Q 018858 29 GFVASS----GEDGCICWFDL--RSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----KEVKSFDVHMP-ASWRPLE 97 (349)
Q Consensus 29 ~~l~t~----~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~-~~~~~~~ 97 (349)
.+++.| +.++.|.+|++ .+++.......+...+..++|+|++++|++++.+ +.|.+|++... .....+.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 455555 34578999876 4565433222266777889999999999999875 79999998753 2233444
Q ss_pred eccCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceEeceec----c-c--------cccceeEEEEccCCCCCCC
Q 018858 98 SYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLR----A-G--------HSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~----~-~--------~~~~v~~~~~~~~~~~~~~ 163 (349)
....+......+++ +++++++++ .++.|.+|++.....+..+. . + +...+.+++|+|
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp------- 164 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP------- 164 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-------
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-------
Confidence 44333456677777 777776655 67899999997543322211 0 0 011234566666
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE-cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
++++++++ ..++.|.+|++......... +.+
T Consensus 165 -----------------------------dg~~l~~~~~~~~~v~v~~~~~~~~~~~~-----------------~~l-- 196 (361)
T 3scy_A 165 -----------------------------DGKYLLADDLGTDQIHKFNINPNANADNK-----------------EKF-- 196 (361)
T ss_dssp -----------------------------TSSEEEEEETTTTEEEEEEECTTCCTTTC-----------------CCC--
T ss_pred -----------------------------CCCEEEEEeCCCCEEEEEEEcCCCCcccc-----------------cce--
Confidence 78866554 46889999998853100000 000
Q ss_pred eeeeeecCcee-eeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 243 MEILDQSGGKR-LHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 243 ~~~~~~~~~~~-~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
... ....... .+...+..++|+ |+|+++++++ .++.|++|++.++..... ..+.....+...
T Consensus 197 --------~~~~~~~~~~~-~~~~~~~~~~~s---pdg~~l~v~~~~~~~v~v~~~~~g~~~~~----~~~~~~~~~~~~ 260 (361)
T 3scy_A 197 --------LTKGTPEAFKV-APGSGPRHLIFN---SDGKFAYLINEIGGTVIAFRYADGMLDEI----QTVAADTVNAQG 260 (361)
T ss_dssp --------EEEEEEEEEEC-CTTCCEEEEEEC---TTSSEEEEEETTTCEEEEEEEETTEEEEE----EEEESCSSCCCC
T ss_pred --------eecccccceec-CCCCCCeEEEEc---CCCCEEEEEcCCCCeEEEEEecCCceEEe----EEEecCCCCCCC
Confidence 000 0011112 233456889999 8999887777 689999999986532100 111122234455
Q ss_pred eEEEEeecCCCCcEEEeeC--CCeEEEeeC
Q 018858 321 VNWLCTTPTESENLVVCDT--SKVVKVYSI 348 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~--dg~i~iw~~ 348 (349)
+..++|+| ++++|+++.. ++.|.+|++
T Consensus 261 ~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 261 SGDIHLSP-DGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp EEEEEECT-TSSEEEEEECSSSCEEEEEEE
T ss_pred cccEEECC-CCCEEEEECCCCCCEEEEEEE
Confidence 68999988 8888877765 589999986
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=2.8e-17 Score=137.15 Aligned_cols=269 Identities=9% Similarity=-0.038 Sum_probs=177.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC----------CCCcEEEEECCCCcEEEEeecC------CCCeEEEEEe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVG------NGPVTSLCFK 67 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~ 67 (349)
+++.+.++..+..+ .++|+|+ +++++++. .++.|.+||..+++.+..+... ......++++
T Consensus 40 t~~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s 116 (361)
T 2oiz_A 40 NGKFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT 116 (361)
T ss_dssp TCCEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC
T ss_pred CCeEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC
Confidence 55667778777776 8999998 88888775 3577999999999988877643 2456779999
Q ss_pred cCCCEEEEEeC--CCeEEEEEccCCCcccceee-ccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCC-ceEece--
Q 018858 68 SGNEDIIYVSS--GKEVKSFDVHMPASWRPLES-YNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQ-HCLYKS-- 140 (349)
Q Consensus 68 ~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~~~~~~-- 140 (349)
|+|++|+++.. ++.|.+||+.+++. +.. +.. .....+.+.|++ ..+++.+.||.+.+|++.. ++....
T Consensus 117 pdg~~l~v~n~~~~~~v~v~d~~~~~~---~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~ 191 (361)
T 2oiz_A 117 TDGKFIVLQNASPATSIGIVDVAKGDY---VEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 191 (361)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEE---EEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEECCCCCCeEEEEECCCCcE---EEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc
Confidence 99999998874 57999999997643 333 321 222335667765 6778888999999999864 544311
Q ss_pred ----eccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 141 ----LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 141 ----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
+. ....+ ..+.+.| ++..++..+.++.+.++|+.....
T Consensus 192 ~~~~~~-~~~~~-~~~~~~~------------------------------------~g~~~~~~~~~~~v~v~d~~~~~~ 233 (361)
T 2oiz_A 192 SKQMFS-VKDDP-IFIAPAL------------------------------------DKDKAHFVSYYGNVYSADFSGDEV 233 (361)
T ss_dssp CCCCSC-TTTSC-BCSCCEE------------------------------------CSSEEEEEBTTSEEEEEECSSSSC
T ss_pred ccceEc-CCCCc-eEEEecc------------------------------------cCCEEEEEeCCCeEEEEEecCCCc
Confidence 11 11111 1112223 556666677889999999875432
Q ss_pred ee--ecC--C-------CCCCccceeeeeccccEEEEeeeee------------e--cCceeeeeeeeecCCCcceEEEE
Q 018858 217 IS--RSK--S-------TTKPLKGSQSTSKVNIRDAEMEILD------------Q--SGGKRLHLDYSVGGHTAAASCVA 271 (349)
Q Consensus 217 ~~--~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~h~~~i~~i~ 271 (349)
.. ... . ........++++|+++.+.+....+ . ......+.+..+..+. +..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia 311 (361)
T 2oiz_A 234 KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMT 311 (361)
T ss_dssp EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEE
T ss_pred eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEE
Confidence 11 100 0 0012233479999988877543201 1 1122345566666665 89999
Q ss_pred EeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC
Q 018858 272 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 332 (349)
Q Consensus 272 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 332 (349)
|+ |+|++|++++. +.|.+||..+++. +++..+..+......+++.| +|.
T Consensus 312 ~s---pdg~~l~v~n~-~~v~v~D~~t~~l-------~~~~~i~~~G~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 312 ID---QQRNLMLTLDG-GNVNVYDISQPEP-------KLLRTIEGAAEASLQVQFHP-VGG 360 (361)
T ss_dssp EE---TTTTEEEEECS-SCEEEEECSSSSC-------EEEEEETTSCSSEEEEEECC-CSC
T ss_pred EC---CCCCEEEEeCC-CeEEEEECCCCcc-------eeeEEeccCCCCcEEEEecC-CCC
Confidence 99 89999998887 9999999998621 23334345667778888888 553
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=2.8e-16 Score=129.93 Aligned_cols=247 Identities=10% Similarity=0.071 Sum_probs=163.6
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC----CeE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----KEV 82 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i 82 (349)
....+..+...+.+++|+|+ +++++++..++.|.+||.++++.......+...+.+++++|+++++++...+ +.|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred eeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 34456666677899999998 7888888888999999998887655444566789999999999877777666 689
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC------CCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+||.+++.....+.. ......+..++++|+++++++... .+.|..+|..+++... +. .....+..++|+|
T Consensus 115 ~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~i~~~~ 191 (333)
T 2dg1_A 115 FAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-II-QNISVANGIALST 191 (333)
T ss_dssp EEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EE-EEESSEEEEEECT
T ss_pred EEEeCCCCEEEEEEcc-CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-ee-cCCCcccceEECC
Confidence 9999886543212211 123356889999999987776653 3456667765544432 22 2333467788888
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccC-ceeeeecCCCCCCccceeeee
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (349)
+++.+ ++...++.|.+||+.. +......
T Consensus 192 ------------------------------------dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~-------------- 221 (333)
T 2dg1_A 192 ------------------------------------DEKVLWVTETTANRLHRIALEDDGVTIQPF-------------- 221 (333)
T ss_dssp ------------------------------------TSSEEEEEEGGGTEEEEEEECTTSSSEEEE--------------
T ss_pred ------------------------------------CCCEEEEEeCCCCeEEEEEecCCCcCcccc--------------
Confidence 77755 4556678999999863 1100000
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN 314 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 314 (349)
.......+.++ ..+..++++ ++|+++++...++.|++||... ..+..+
T Consensus 222 ------------------~~~~~~~~~~~-~~~~~i~~d---~~G~l~v~~~~~~~v~~~d~~g----------~~~~~~ 269 (333)
T 2dg1_A 222 ------------------GATIPYYFTGH-EGPDSCCID---SDDNLYVAMYGQGRVLVFNKRG----------YPIGQI 269 (333)
T ss_dssp ------------------EEEEEEECCSS-SEEEEEEEB---TTCCEEEEEETTTEEEEECTTS----------CEEEEE
T ss_pred ------------------cceEEEecCCC-CCCCceEEC---CCCCEEEEEcCCCEEEEECCCC----------CEEEEE
Confidence 00111122222 457789999 8999888887889999999853 222222
Q ss_pred cccc------cceEEEEeecCCCCcEEEeeCC
Q 018858 315 INLN------KKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 315 ~~~~------~~v~~~~~~~~~~~~l~~~~~d 340 (349)
..+. ..+.+++|.| +++.|+.++.+
T Consensus 270 ~~~~~~~g~~~~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 270 LIPGRDEGHMLRSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp ECTTGGGTCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred EcCCCccccccCcceEEECC-CCCEEEEEeCc
Confidence 2222 2688999976 66667666544
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=9.1e-17 Score=134.03 Aligned_cols=257 Identities=12% Similarity=0.077 Sum_probs=163.4
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC----------CCeEEEEEccCCCcccceeeccC---c
Q 018858 36 EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNY---N 102 (349)
Q Consensus 36 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~---~ 102 (349)
.|+.|.+||..+++.+..+..+..+ .++|+|+++++++++. ++.|.+||..+.+....+..... +
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 3679999999999998888876555 8999999999998863 56899999987655444433211 1
Q ss_pred ccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEece-eccccccceeEEEEccCCCCCCCCCCCCCCccccCCcee
Q 018858 103 KEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFV 179 (349)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (349)
......++++|++++|+++.. ++.|.+||+.+++.+.. +. ... ...+.+.|+
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~~-~~~v~~~p~---------------------- 161 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--AAG-CWSVIPQPN---------------------- 161 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--GTT-EEEEEECTT----------------------
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--CCC-cceeEEcCC----------------------
Confidence 234677999999999988764 57899999999988877 55 221 223456662
Q ss_pred EEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-ceeeeecC----CCCCCccceeeeeccccEEEEeee------eee
Q 018858 180 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSK----STTKPLKGSQSTSKVNIRDAEMEI------LDQ 248 (349)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 248 (349)
....+++.+.||.+.+|++.. ++...... .........+.+++++..++.... .+.
T Consensus 162 -------------~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~ 228 (361)
T 2oiz_A 162 -------------RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADF 228 (361)
T ss_dssp -------------SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEEC
T ss_pred -------------CCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEe
Confidence 236677788899999998864 33221100 000111122333455544332110 000
Q ss_pred cCceeeeeeeeec--C----C----CcceEEEEEeeecCCccEEEEeeC-----------CCeEEEEecCCCcceecccc
Q 018858 249 SGGKRLHLDYSVG--G----H----TAAASCVAFSMFGERGKYLISGGN-----------DKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 249 ~~~~~~~~~~~~~--~----h----~~~i~~i~~~~~~~~~~~l~s~~~-----------d~~i~vwd~~~~~~~~~~~~ 307 (349)
... .......+. . + ......++++ |+++.++++.. .+.|.+||+.+.
T Consensus 229 ~~~-~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~---~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-------- 296 (361)
T 2oiz_A 229 SGD-EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH---RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-------- 296 (361)
T ss_dssp SSS-SCEEEEEEESCCHHHHHTTCEECCSSCEEEE---TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--------
T ss_pred cCC-CceecccccccCccccccccccCCeeEEEEe---cCCCeEEEEEccCCCcccccCCCceEEEEECCCC--------
Confidence 000 000001100 0 0 0111126788 88777766543 358999999997
Q ss_pred cceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 308 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+..+..+. +.+++|+| ++++|++++. +.|.+||+.
T Consensus 297 -~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 297 -QRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp -EEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEEECS
T ss_pred -cEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECC
Confidence 5555555555 89999988 8888988887 999999963
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=7.9e-18 Score=152.32 Aligned_cols=250 Identities=10% Similarity=0.075 Sum_probs=168.8
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEe--CCCCcEEEEECCCCcEEEEeecCCCCeE---------EEEEe--cCCCE-E
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASS--GEDGCICWFDLRSKDVQLVTDVGNGPVT---------SLCFK--SGNED-I 73 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l 73 (349)
.+.+.+|...+..++++++ .-+++.. +.++...||....+.....+..+...+. ...|+ |+|+. |
T Consensus 16 ~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 3456789999999999987 6666666 6688899998654444566666666665 56666 99998 7
Q ss_pred EEEeC-CCeEEEEEcc--C-CCcccceeeccC--cccceEEEEEccCCCEEEEEcCC----------CcEEEEEcCC---
Q 018858 74 IYVSS-GKEVKSFDVH--M-PASWRPLESYNY--NKEEINQIVCNPKSSFLACADDG----------GDVKIIDIRQ--- 134 (349)
Q Consensus 74 ~~~~~-dg~i~iwd~~--~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~--- 134 (349)
+.++. +..|.++++. . +. ...+..... +...+..++|+|||+.|++++.+ ..|++||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 77664 4567666665 2 32 222222110 44678899999999999988876 5799999987
Q ss_pred ---ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC--------
Q 018858 135 ---HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-------- 203 (349)
Q Consensus 135 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------- 203 (349)
++...... .+...+..++|+| +|+.|+.++.+
T Consensus 174 ~~~~~~~~l~~-~~~~~~~~~~~Sp------------------------------------DG~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 174 ADRSAVRELSD-DAHRFVTGPRLSP------------------------------------DGRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp TCGGGSEESSC-SCSSEECCCEECT------------------------------------TSSEEEEEEECTTCCTTTC
T ss_pred ccCCceeEEEe-cCCCcccCceECC------------------------------------CCCEEEEEECCCCCCCCCC
Confidence 55433331 2345677888998 88988877644
Q ss_pred CeEEEEEcc-CceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEE
Q 018858 204 GVVDVINIE-SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL 282 (349)
Q Consensus 204 g~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l 282 (349)
..|.+||+. ++.. ........+|...+..+.|+ |||+++
T Consensus 217 ~~i~~~d~~~~g~~-------------------------------------~~~~~l~~~~~~~~~~~~~s---pdg~l~ 256 (662)
T 3azo_A 217 TELKTARVTEDGRF-------------------------------------ADTRTLLGGPEEAIAQAEWA---PDGSLI 256 (662)
T ss_dssp EEEEEEEECTTSCE-------------------------------------EEEEEEEEETTBCEEEEEEC---TTSCEE
T ss_pred cEEEEEEECCCCcc-------------------------------------cccEEeCCCCCceEcceEEC---CCCeEE
Confidence 379999988 3210 01112223356778999999 899988
Q ss_pred EEeeCCC--eEEEEecCCCcceecccccceeeeccccccc--------eEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 283 ISGGNDK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKK--------VNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 283 ~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++++.|+ .|++||+.+++ .......+... +..+++++ +++++++++. +.++||.
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~---------~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 257 VATDRTGWWNLHRVDPATGA---------ATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp EEECTTSSCEEEEECTTTCC---------EEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEE
T ss_pred EEECCCCCeEEEEEECCCCc---------eeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEE
Confidence 8888888 67777765552 22122222211 45678876 7778888888 9999994
No 172
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.80 E-value=7.5e-17 Score=146.84 Aligned_cols=245 Identities=7% Similarity=-0.046 Sum_probs=162.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCC-----cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCe------
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDG-----CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE------ 81 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------ 81 (349)
+|...+..++|||+ +++|+.+..++ .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 122 DGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred CCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccc
Confidence 35557889999999 78887654332 8999999999876533222 22667999999999999987765
Q ss_pred ----------EEEEEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcC-----CCcEEEEEcCC------ce-Ee
Q 018858 82 ----------VKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIRQ------HC-LY 138 (349)
Q Consensus 82 ----------i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~ 138 (349)
|++|++.+++.. ..+.....+...+..+.|+|++++|+..+. +..|++||+.+ +. ..
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 999999876422 122222223455788999999999987664 56799999976 42 23
Q ss_pred ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC----CCeEEEEEccCc
Q 018858 139 KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----DGVVDVINIESE 214 (349)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~ 214 (349)
..+. .+...+.. .|+| +++.|+..+. .+.|.+||+.++
T Consensus 280 ~~l~-~~~~~~~~-~~s~------------------------------------dg~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 280 VKLI-DNFEGEYD-YVTN------------------------------------EGTVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp EEEE-CSSSSCEE-EEEE------------------------------------ETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EEee-CCCCcEEE-EEec------------------------------------cCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 4444 34444433 4667 5666665543 236899998763
Q ss_pred eeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCC--cceEEEEEeeecCCccEEEEeeCCCe--
Q 018858 215 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT--AAASCVAFSMFGERGKYLISGGNDKL-- 290 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~i~~~~~~~~~~~l~s~~~d~~-- 290 (349)
.. .....+..|. ..+..+.|+ +++.++++...|+.
T Consensus 322 ~~--------------------------------------~~~~~l~~~~~~~~~~~~~~~---~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 322 EE--------------------------------------SKWKVLVPEHEKDVLEWVACV---RSNFLVLCYLHDVKNT 360 (710)
T ss_dssp CG--------------------------------------GGCEEEECCCSSCEEEEEEEE---TTTEEEEEEEETTEEE
T ss_pred Cc--------------------------------------ccceeccCCCCCCeEEEEEEE---cCCEEEEEEEECCEEE
Confidence 10 0112233333 267788888 78888888888875
Q ss_pred EEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEE-Eee---CCCeEEEeeC
Q 018858 291 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV-VCD---TSKVVKVYSI 348 (349)
Q Consensus 291 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~---~dg~i~iw~~ 348 (349)
|++|++.++ ..+..+..+.+.+..++++| +++.++ +.+ ..+.|+.||+
T Consensus 361 l~~~~~~~g---------~~~~~l~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 361 LQLHDLATG---------ALLKIFPLEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EEEEETTTC---------CEEEEECCCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEET
T ss_pred EEEEECCCC---------CEEEecCCCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEEC
Confidence 566777555 33334445567788888887 555444 333 4578999986
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=4.1e-17 Score=147.62 Aligned_cols=251 Identities=8% Similarity=-0.022 Sum_probs=158.4
Q ss_pred CCCeeeeCCceeee---------EEEEe--cCCCce-EEEe-CCCCcEEEEECC--C-CcEEEEeec-----CCCCeEEE
Q 018858 6 AKPRRLRGHKATAT---------CCIAS--RDRPGF-VASS-GEDGCICWFDLR--S-KDVQLVTDV-----GNGPVTSL 64 (349)
Q Consensus 6 ~~~~~l~~h~~~i~---------~~~~~--~~~~~~-l~t~-~~dg~i~vwd~~--~-~~~~~~~~~-----~~~~v~~~ 64 (349)
...+.+..|...+. ...|+ |+ ++. |+.+ ..+..|.++++. . ++ ...+.. |...+..+
T Consensus 58 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD-g~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~ 135 (662)
T 3azo_A 58 GAEESALPAPWNVRNRVFEYSGFPWAGVPRPA-GGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADP 135 (662)
T ss_dssp SCEEESSCTTCCBCCCGGGTCCCCEEEECCSS-SSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEE
T ss_pred CCcceeCCCCccccccccccCCccceeeeecC-CCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCc
Confidence 44566777776666 66666 88 565 5544 446677788776 3 44 344444 56678899
Q ss_pred EEecCCCEEEEEeCC----------CeEEEEEccC------CCcccceeecc-CcccceEEEEEccCCCEEEEEcCC---
Q 018858 65 CFKSGNEDIIYVSSG----------KEVKSFDVHM------PASWRPLESYN-YNKEEINQIVCNPKSSFLACADDG--- 124 (349)
Q Consensus 65 ~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--- 124 (349)
+|+|+|+.|++++.+ ..|++||+.+ ++ . ..+. .+...+..++|+|||++|+.++.+
T Consensus 136 ~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~---~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~ 211 (662)
T 3azo_A 136 VLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-V---RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR 211 (662)
T ss_dssp EEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-S---EESSCSCSSEECCCEECTTSSEEEEEEECTTC
T ss_pred EECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-e---eEEEecCCCcccCceECCCCCEEEEEECCCCC
Confidence 999999999998876 5899999986 32 2 2222 334667889999999999877754
Q ss_pred -----CcEEEEEcC-Cc---eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc
Q 018858 125 -----GDVKIIDIR-QH---CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 195 (349)
Q Consensus 125 -----g~i~i~d~~-~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
..|++||+. ++ +...... .+...+..+.|+| +++
T Consensus 212 ~~~~~~~i~~~d~~~~g~~~~~~~l~~-~~~~~~~~~~~sp------------------------------------dg~ 254 (662)
T 3azo_A 212 MPWEGTELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAP------------------------------------DGS 254 (662)
T ss_dssp CTTTCEEEEEEEECTTSCEEEEEEEEE-ETTBCEEEEEECT------------------------------------TSC
T ss_pred CCCCCcEEEEEEECCCCcccccEEeCC-CCCceEcceEECC------------------------------------CCe
Confidence 379999998 56 4333333 4567889999999 788
Q ss_pred EEEEEcCCC--eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEe
Q 018858 196 ICVVAKGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS 273 (349)
Q Consensus 196 ~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~ 273 (349)
+++++..++ .|.+||+.+++......... . .. ...-...+..++|+
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~------------------------------~-~~-~p~w~~~~~~~~~~ 302 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREE------------------------------E-FA-GPLWTPGMRWFAPL 302 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSS------------------------------B-SS-CCCCSTTCCSEEEC
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccc------------------------------c-cc-CccccccCceEeEe
Confidence 888888888 56666654432111111000 0 00 00000114568888
Q ss_pred eecCCccEEEEeeCCCeEEEE--ecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEe-eCCCeEEEe
Q 018858 274 MFGERGKYLISGGNDKLVKVW--DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC-DTSKVVKVY 346 (349)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw 346 (349)
++++++++++. +.++|| |+.++ .+..+..+...+..+. ++..+.+++++ +.+....+|
T Consensus 303 ---~~~~~~~~~~~-~~~~l~~~d~~~~----------~~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 303 ---ANGLIAVVHGK-GAAVLGILDPESG----------ELVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp ---TTSCEEEEEBS-SSCEEEEEETTTT----------EEEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEE
T ss_pred ---CCCEEEEEEEc-CccEEEEEECCCC----------cEEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEE
Confidence 89999999998 999999 54443 2345556666677661 33222333333 455444444
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.79 E-value=1.4e-16 Score=132.59 Aligned_cols=257 Identities=11% Similarity=-0.031 Sum_probs=165.2
Q ss_pred ceeeeEEEEecCCCceEEEe---------CCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---C--
Q 018858 15 KATATCCIASRDRPGFVASS---------GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---K-- 80 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~---------~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-- 80 (349)
...+..+++ + |+.++.. ..++.|.+||+.+++... + ..+..++|+|+|++|+.++.+ +
T Consensus 14 ~~~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 14 FAYLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp SCEEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred eEEcccceE--C-CcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 345677777 5 6666643 125789999999887543 3 468889999999999987753 3
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC---------------------------CcEEEEEcC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG---------------------------GDVKIIDIR 133 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~i~i~d~~ 133 (349)
.|.+|++.+++. ..+... .. +..++|+|+++.|+.++.+ ..|++||+.
T Consensus 86 ~l~~~~~~~g~~-~~l~~~---~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 86 EIWVADLETLSS-KKILEA---KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEEEETTTTEE-EEEEEE---SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred eEEEEECCCCce-EEEEcC---CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 477788876532 222222 23 8899999999988877632 569999999
Q ss_pred CceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC-------eE
Q 018858 134 QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-------VV 206 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-------~i 206 (349)
+++.+..+. . . .+..+.|+| ++ +++++..++ ..
T Consensus 161 ~~~~~~~l~-~-~-~~~~~~~sp------------------------------------dg-~~~~~~~~~~~~~~~~~~ 200 (347)
T 2gop_A 161 SEEVIEEFE-K-P-RFSSGIWHR------------------------------------DK-IVVNVPHREIIPQYFKFW 200 (347)
T ss_dssp TTEEEEEEE-E-E-TTCEEEEET------------------------------------TE-EEEEEECCCSSCCSSCCE
T ss_pred CCeEEeeec-C-C-CcccccCCC------------------------------------Ce-EEEEEecccccccccccc
Confidence 887756666 3 3 788899999 67 666665432 33
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee---------cCceeeeeeeeecCCCcceEE-EEEeeec
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ---------SGGKRLHLDYSVGGHTAAASC-VAFSMFG 276 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~h~~~i~~-i~~~~~~ 276 (349)
.+|.+.+++....... ... ..++|+|+.+++.+.... ......+.......|...+.. +.|+
T Consensus 201 ~l~~~d~~~~~~l~~~---~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s--- 272 (347)
T 2gop_A 201 DIYIWEDGKEEKMFEK---VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD--- 272 (347)
T ss_dssp EEEEEETTEEEEEEEE---ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET---
T ss_pred cEEEeCCCceEEeccC---cce--eeECCCCCEEEEEEccccCCccccceEEEECCCceEeccccCCcccCCccEEc---
Confidence 4444434433222221 222 234999998886543221 000011222223345566775 6764
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeE-EEeeC
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV-KVYSI 348 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i-~iw~~ 348 (349)
++ ++++++.++.+++| +.++ ... ....+...|.+++|+| .++++++.++.. .+|.+
T Consensus 273 -dg-~~~~~~~~~~~~l~-~~~g---------~~~-~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 273 -GK-VYFTLFEEGSVNLY-IWDG---------EIK-PIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTW 329 (347)
T ss_dssp -TE-EEEEEEETTEEEEE-EESS---------SEE-EEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEE
T ss_pred -Cc-EEEEEecCCcEEEE-EcCC---------ceE-EEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEe
Confidence 66 88899999999999 8743 222 2334567889999977 477777777654 77754
No 175
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.79 E-value=3.6e-16 Score=125.27 Aligned_cols=238 Identities=9% Similarity=-0.036 Sum_probs=161.0
Q ss_pred eeeEEEEecCCCceEE-EeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 17 TATCCIASRDRPGFVA-SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
...+++++++ +++++ +...++.|.+||..+.........+...+.+++++++++.+++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred CccceEECCC-CCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence 6678999998 67776 556788999999765543322222335678899999998665555 88999999875322 11
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYN 175 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
+. ......+..+++.++++.+++...++.|.+|+..+........ .....+.+++++|
T Consensus 102 ~~--~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~------------------- 159 (270)
T 1rwi_B 102 LP--FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDN------------------- 159 (270)
T ss_dssp CC--CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEECT-------------------
T ss_pred ee--cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEeC-------------------
Confidence 11 1122568899999999888877778899999765543322222 2234567788887
Q ss_pred CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeee
Q 018858 176 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 255 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
+++++++...++.|.+||.....
T Consensus 160 -----------------~g~l~v~~~~~~~i~~~~~~~~~---------------------------------------- 182 (270)
T 1rwi_B 160 -----------------SGNVYVTDTDNNRVVKLEAESNN---------------------------------------- 182 (270)
T ss_dssp -----------------TCCEEEEEGGGTEEEEECTTTCC----------------------------------------
T ss_pred -----------------CCCEEEEECCCCEEEEEecCCCc----------------------------------------
Confidence 78877777778899999987531
Q ss_pred eeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEE
Q 018858 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 335 (349)
Q Consensus 256 ~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 335 (349)
.......+...+..++++ ++|.++++...++.|++|+..... .......+...+.++++.+ ++++++
T Consensus 183 ~~~~~~~~~~~p~~i~~d---~~g~l~v~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~p~~i~~~~-~g~l~v 249 (270)
T 1rwi_B 183 QVVLPFTDITAPWGIAVD---EAGTVYVTEHNTNQVVKLLAGSTT---------STVLPFTGLNTPLAVAVDS-DRTVYV 249 (270)
T ss_dssp EEECCCSSCCSEEEEEEC---TTCCEEEEETTTSCEEEECTTCSC---------CEECCCCSCSCEEEEEECT-TCCEEE
T ss_pred eEeecccCCCCceEEEEC---CCCCEEEEECCCCcEEEEcCCCCc---------ceeeccCCCCCceeEEECC-CCCEEE
Confidence 111111222567899999 888888877778999999987642 2222223335688999987 777777
Q ss_pred EeeCCCeEEEeeCC
Q 018858 336 VCDTSKVVKVYSIS 349 (349)
Q Consensus 336 ~~~~dg~i~iw~~~ 349 (349)
+...++.|+++++.
T Consensus 250 ~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 250 ADRGNDRVVKLTSL 263 (270)
T ss_dssp EEGGGTEEEEECCC
T ss_pred EECCCCEEEEEcCC
Confidence 77889999999863
No 176
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=1.1e-16 Score=134.15 Aligned_cols=235 Identities=14% Similarity=0.082 Sum_probs=148.8
Q ss_pred eEEEeCCC--CcEEEEEC--CCCcEEE--Eee-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc-CCCcccceeeccC
Q 018858 30 FVASSGED--GCICWFDL--RSKDVQL--VTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH-MPASWRPLESYNY 101 (349)
Q Consensus 30 ~l~t~~~d--g~i~vwd~--~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~ 101 (349)
+++.|+.. +.|.+|++ .++++.. ... .....+..++|+|++++|++++.+ .|.+|++. +++... +.....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeec
Confidence 34444432 46887765 4555422 221 233467889999999999998887 99999997 553322 111111
Q ss_pred cccceEEEEEccCCCE--EEEEc-------------CCCcEEEEEcC-CceEeceecc---ccccceeEEEEccCCCCCC
Q 018858 102 NKEEINQIVCNPKSSF--LACAD-------------DGGDVKIIDIR-QHCLYKSLRA---GHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 102 ~~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~ 162 (349)
. +.+..++|+|++++ ++++. .++.+.+|++. +++....+.. .+...+.+++|+|
T Consensus 82 ~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp------ 154 (365)
T 1jof_A 82 G-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP------ 154 (365)
T ss_dssp C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT------
T ss_pred C-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC------
Confidence 1 23556899999984 45553 68899999997 4554433320 1345678888888
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEcc-CceeeeecCCCCCCccceeeeeccccEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIE-SELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++++++++. .++.|++|++. +++.
T Consensus 155 ------------------------------dG~~l~~~~~~~~~v~~~~~~~~g~~------------------------ 180 (365)
T 1jof_A 155 ------------------------------TETYLYSADLTANKLWTHRKLASGEV------------------------ 180 (365)
T ss_dssp ------------------------------TSSEEEEEETTTTEEEEEEECTTSCE------------------------
T ss_pred ------------------------------CCCEEEEEcCCCCEEEEEEECCCCCE------------------------
Confidence 788777765 46899999997 4321
Q ss_pred EEeeeeeecCceeeeeeeeec--CCCcceEEEEEeeecCCccEEEEeeC-CCeEEEEecCC--Ccceecccccceeeec-
Q 018858 241 AEMEILDQSGGKRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSR--FQGVQTSINNDLLIKN- 314 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~~--~~~~~~~~~~~~~~~~- 314 (349)
..+..+. .|...+..++|+ |+|+++++++. ++.|.+|++.. ++..... ..+...
T Consensus 181 --------------~~~~~~~~~~~g~~p~~~~~s---pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~---~~~~~~~ 240 (365)
T 1jof_A 181 --------------ELVGSVDAPDPGDHPRWVAMH---PTGNYLYALMEAGNRICEYVIDPATHMPVYTH---HSFPLIP 240 (365)
T ss_dssp --------------EEEEEEECSSTTCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTTCCEEEEE---EEEESSC
T ss_pred --------------EEeeeEecCCCCCCCCEeEEC---CCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc---ceEEcCC
Confidence 1111222 234568899999 89999888774 68999998763 3211000 011111
Q ss_pred ---ccccc------ceEEEE-eecCCCCcEEEeeCC-C-----eEEEeeC
Q 018858 315 ---INLNK------KVNWLC-TTPTESENLVVCDTS-K-----VVKVYSI 348 (349)
Q Consensus 315 ---~~~~~------~v~~~~-~~~~~~~~l~~~~~d-g-----~i~iw~~ 348 (349)
.+|.. .+..++ |+| +|++|++++.+ . .|.+|++
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred CCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEE
Confidence 12232 578899 877 88888877543 2 8999986
No 177
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=4.5e-17 Score=148.95 Aligned_cols=241 Identities=12% Similarity=0.027 Sum_probs=154.1
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeecc--CcccceEEEEEccCCCEEEEEcCC---------CcEE
Q 018858 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN--YNKEEINQIVCNPKSSFLACADDG---------GDVK 128 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~ 128 (349)
....++|+|++++++++ |+.|++||+.+++....+.... ........++|+||+++|+.++.+ +.++
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35578999999988886 8999999999876533322211 111123458999999999988875 5677
Q ss_pred EEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEE
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV 208 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 208 (349)
+||+.+++... +. .+...+...+|+| +|+.|+.+ .++.|++
T Consensus 96 ~~d~~~~~~~~-l~-~~~~~~~~~~~SP------------------------------------dG~~la~~-~~~~i~~ 136 (740)
T 4a5s_A 96 IYDLNKRQLIT-EE-RIPNNTQWVTWSP------------------------------------VGHKLAYV-WNNDIYV 136 (740)
T ss_dssp EEETTTTEECC-SS-CCCTTEEEEEECS------------------------------------STTCEEEE-ETTEEEE
T ss_pred EEECCCCcEEE-cc-cCCCcceeeEECC------------------------------------CCCEEEEE-ECCeEEE
Confidence 99999988644 55 5677899999999 78888887 4689999
Q ss_pred EEccCceeeeecCCCCC-----------------CccceeeeeccccEEEEeeeeeecCc--------------------
Q 018858 209 INIESELNISRSKSTTK-----------------PLKGSQSTSKVNIRDAEMEILDQSGG-------------------- 251 (349)
Q Consensus 209 ~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 251 (349)
|++.++........... .....+.|||||+.|+.....+....
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 99987765543322221 12245889999999986432111000
Q ss_pred ---------e--ee----------e---eeeeec------CCCcceEEEEEeeecCCccEEEEee----CCCeEEEEecC
Q 018858 252 ---------K--RL----------H---LDYSVG------GHTAAASCVAFSMFGERGKYLISGG----NDKLVKVWDCS 297 (349)
Q Consensus 252 ---------~--~~----------~---~~~~~~------~h~~~i~~i~~~~~~~~~~~l~s~~----~d~~i~vwd~~ 297 (349)
. .. . ....+. +|...+..++|+ |||+.++... .+..|++||+.
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws---pdg~~~~~~~~r~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA---TQERISLQWLRRIQNYSVMDICDYD 293 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE---ETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe---CCCeEEEEEeCCCCCEEEEEEEECC
Confidence 0 00 0 011121 266678899999 8999766543 33479999999
Q ss_pred CCcceecccccceeee--ccccccceE-----EEEeecCCCCcEE-Eee-CC--CeEEEeeC
Q 018858 298 RFQGVQTSINNDLLIK--NINLNKKVN-----WLCTTPTESENLV-VCD-TS--KVVKVYSI 348 (349)
Q Consensus 298 ~~~~~~~~~~~~~~~~--~~~~~~~v~-----~~~~~~~~~~~l~-~~~-~d--g~i~iw~~ 348 (349)
+++..... ..... ...|...+. ..+|+| ||+.|+ ..+ .+ ..|++|++
T Consensus 294 tg~~~~~~---~~~~~l~~~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 294 ESSGRWNC---LVARQHIEMSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp TTTTEEEE---CGGGCEEEECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEEEET
T ss_pred CCccccce---eEEEEeeeccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEEEEC
Confidence 87410000 00111 123443333 677877 887766 555 34 45777765
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.76 E-value=1.4e-15 Score=121.66 Aligned_cols=188 Identities=12% Similarity=0.035 Sum_probs=139.7
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCC-CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (349)
+++|++++.++.|.+||.++++.+..+..+. ..+.+++++|+|+.++ +.++.|..||. +++....+... ....+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~--~~~~~ 79 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP--AGCEM 79 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC--TTCEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC--CCccc
Confidence 5899999999999999999999999998776 5788999999999888 45778999998 66544443321 12467
Q ss_pred EEEEEccCCCEEEEEcC-CCcEEEEEcCCceEeceeccc-----cccceeEEEEccCCCCCCCCCCCCCCccccCCceeE
Q 018858 107 NQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLRAG-----HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVH 180 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (349)
.++.+.++++.+++.+. ++.|..+|. +++.+..+... +......+++.+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~------------------------ 134 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK------------------------ 134 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT------------------------
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC------------------------
Confidence 88899999999998877 777888875 67766665411 111233344444
Q ss_pred EeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee
Q 018858 181 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 260 (349)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (349)
+++++++...++.|..||.+ + +.+.++
T Consensus 135 ------------~G~~lv~~~~~~~v~~~d~~-G----------------------------------------~~~w~~ 161 (276)
T 3no2_A 135 ------------KGNYLVPLFATSEVREIAPN-G----------------------------------------QLLNSV 161 (276)
T ss_dssp ------------TSCEEEEETTTTEEEEECTT-S----------------------------------------CEEEEE
T ss_pred ------------CCCEEEEecCCCEEEEECCC-C----------------------------------------CEEEEE
Confidence 89999999999999999988 4 223333
Q ss_pred cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcce
Q 018858 261 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 302 (349)
Q Consensus 261 ~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 302 (349)
... ..+.++... ++|+++++++.++.|..+|..+++.+
T Consensus 162 ~~~-~~~~~~~~~---~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 162 KLS-GTPFSSAFL---DNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp ECS-SCCCEEEEC---TTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred ECC-CCccceeEc---CCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 322 234456666 89999999988889999999988543
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.75 E-value=1.8e-16 Score=143.96 Aligned_cols=243 Identities=11% Similarity=-0.013 Sum_probs=158.2
Q ss_pred CCceeeeEEEEecCCCceEE-----EeCCCCcEEEEECCCCcEEEEeecCCCCe--EEEEEecCCCEEEEEeCCCe----
Q 018858 13 GHKATATCCIASRDRPGFVA-----SSGEDGCICWFDLRSKDVQLVTDVGNGPV--TSLCFKSGNEDIIYVSSGKE---- 81 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~-----t~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~---- 81 (349)
+|...+.+++|||+ +++|+ .|+.+..|++||+.+++.+. ..+...+ ..++|+|+|+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 46668999999999 88888 55566789999999988641 1111122 67899999999999988765
Q ss_pred ---------EEEEEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcCCC----cEEEEEcCCceEeceecccccc
Q 018858 82 ---------VKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADDGG----DVKIIDIRQHCLYKSLRAGHSS 147 (349)
Q Consensus 82 ---------i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~ 147 (349)
|++|++.++... ..+.....+...+..+.|+|+|++|+.++.++ .|++++..+++. ..+. .+..
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~-~~~~ 272 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV-KGVG 272 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE-ECSS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee-cCCC
Confidence 999999876432 23333333445788999999999998877665 677777655543 3333 3444
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc---CCCeEEEEEccCceeeeecCCCC
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINIESELNISRSKSTT 224 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~ 224 (349)
.+....+ + ++.+++... .++.|.+||+.++..
T Consensus 273 ~~~~~~~-~------------------------------------~g~l~~~s~~~~~~~~l~~~d~~~~~~-------- 307 (695)
T 2bkl_A 273 AKYEVHA-W------------------------------------KDRFYVLTDEGAPRQRVFEVDPAKPAR-------- 307 (695)
T ss_dssp CCEEEEE-E------------------------------------TTEEEEEECTTCTTCEEEEEBTTBCSG--------
T ss_pred ceEEEEe-c------------------------------------CCcEEEEECCCCCCCEEEEEeCCCCCc--------
Confidence 4455555 4 445444443 257899999875310
Q ss_pred CCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC-CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC-Ccce
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR-FQGV 302 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~ 302 (349)
. .....+..+ ...+..+.++ ++.++++...|+..++|.+.. +
T Consensus 308 ---------------------------~--~~~~l~~~~~~~~l~~~~~~----~~~lv~~~~~dg~~~l~~~~~~g--- 351 (695)
T 2bkl_A 308 ---------------------------A--SWKEIVPEDSSASLLSVSIV----GGHLSLEYLKDATSEVRVATLKG--- 351 (695)
T ss_dssp ---------------------------G--GCEEEECCCSSCEEEEEEEE----TTEEEEEEEETTEEEEEEEETTC---
T ss_pred ---------------------------c--CCeEEecCCCCCeEEEEEEE----CCEEEEEEEECCEEEEEEEeCCC---
Confidence 0 001112222 3457778876 677889999999888886652 2
Q ss_pred ecccccceeeecccc-ccceEEEEeecCCCCcEE-Ee---eCCCeEEEeeC
Q 018858 303 QTSINNDLLIKNINL-NKKVNWLCTTPTESENLV-VC---DTSKVVKVYSI 348 (349)
Q Consensus 303 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~-~~---~~dg~i~iw~~ 348 (349)
.....+..+ ...+..++++| +++.++ +. ...+.|++||+
T Consensus 352 ------~~~~~l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 352 ------KPVRTVQLPGVGAASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp ------CEEEECCCSSSSEECCCBSCT-TCSEEEEEEEETTEEEEEEEEET
T ss_pred ------CeeEEecCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEEC
Confidence 222233333 56677788877 665555 33 24578999986
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.75 E-value=3.9e-15 Score=122.58 Aligned_cols=239 Identities=13% Similarity=-0.043 Sum_probs=161.1
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
....+.+.. ++++++...++.|.+||..+++.+.++. .......++++++++..++...++.|.+||..+++....+
T Consensus 45 ~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 45 VAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp CEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred cceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 356676653 5666666778999999999999988886 4567889999998854444437899999999876533333
Q ss_pred eecc--CcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccc
Q 018858 97 ESYN--YNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQC 173 (349)
Q Consensus 97 ~~~~--~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
..-. ........+++ .+++.+++.. .++.|.++|+.+++.+..+. . ......+.++|
T Consensus 122 ~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~-~-g~~p~~i~~~~----------------- 181 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT-I-GIQPTSLVMDK----------------- 181 (328)
T ss_dssp ECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE-C-SSCBCCCEECT-----------------
T ss_pred EcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE-c-CCCccceEEcC-----------------
Confidence 2211 00114556777 3444444443 47899999999998887776 2 33456778887
Q ss_pred cCCceeEEeecCcccccCCCCcEEEEEcCC----------CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 174 YNPAFVHAIAIPDADMLDKTNKICVVAKGD----------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++++++++..+ +.|.++|..+.+
T Consensus 182 -------------------dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~---------------------------- 214 (328)
T 3dsm_A 182 -------------------YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT---------------------------- 214 (328)
T ss_dssp -------------------TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE----------------------------
T ss_pred -------------------CCCEEEEECCCccCCccccCCceEEEEECCCCe----------------------------
Confidence 78877766554 789999998742
Q ss_pred eeeeecCceeeeeeeeecCC-CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceE
Q 018858 244 EILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 322 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h-~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 322 (349)
....+.-. ......++++ |++++|+++.. .|++||..+++... ............
T Consensus 215 ------------v~~~~~~~~g~~p~~la~~---~d~~~lyv~~~--~v~~~d~~t~~~~~-------~~~~~~~~~~p~ 270 (328)
T 3dsm_A 215 ------------VEKQFKFKLGDWPSEVQLN---GTRDTLYWINN--DIWRMPVEADRVPV-------RPFLEFRDTKYY 270 (328)
T ss_dssp ------------EEEEEECCTTCCCEEEEEC---TTSCEEEEESS--SEEEEETTCSSCCS-------SCSBCCCSSCEE
T ss_pred ------------EEEEEecCCCCCceeEEEe---cCCCEEEEEcc--EEEEEECCCCceee-------eeeecCCCCceE
Confidence 22222211 2357899999 88888887765 89999998863210 001111245688
Q ss_pred EEEeecCCCCcEEEe----eCCCeEEEeeCC
Q 018858 323 WLCTTPTESENLVVC----DTSKVVKVYSIS 349 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~----~~dg~i~iw~~~ 349 (349)
.++++|.++++.++. ..++.|.+||..
T Consensus 271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 899988666655555 578999999863
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.75 E-value=1.3e-13 Score=111.95 Aligned_cols=277 Identities=8% Similarity=-0.016 Sum_probs=180.9
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE-EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 89 (349)
+..+...+.++++.++ ++++++...++.|.+||.. ++... ....+...+..+++.+++...++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 4455678999999998 7777777667899999988 55432 222345678999999999877777768899999876
Q ss_pred CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCC
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
++ ...+. .......+..+++.+++.++++...++.|.+||. +++............+..+++.+
T Consensus 87 g~-~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~------------- 150 (299)
T 2z2n_A 87 GI-IKEYT-LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS------------- 150 (299)
T ss_dssp SC-EEEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-------------
T ss_pred Cc-EEEEe-CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-------------
Confidence 22 22221 2223456889999999988888777889999998 55443222112345577888877
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee---e
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---L 246 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 246 (349)
+++++++...++.|..||. +++............+..++++++|..+++... .
T Consensus 151 -----------------------~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 206 (299)
T 2z2n_A 151 -----------------------DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKI 206 (299)
T ss_dssp -----------------------TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred -----------------------CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceE
Confidence 7887777777889999998 544433212222345678899999987665311 1
Q ss_pred eecCceeeee-eeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee-eccccccceEEE
Q 018858 247 DQSGGKRLHL-DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNWL 324 (349)
Q Consensus 247 ~~~~~~~~~~-~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~ 324 (349)
..... .... ......+...+.+++++ ++|+++++...++.|.+||.. + .... ....+...+.++
T Consensus 207 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~---~~g~l~v~~~~~~~i~~~d~~-g---------~~~~~~~~~~~~~~~~i 272 (299)
T 2z2n_A 207 GRITT-SGEITEFKIPTPNARPHAITAG---AGIDLWFTEWGANKIGRLTSN-N---------IIEEYPIQIKSAEPHGI 272 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEEC---STTCEEEEETTTTEEEEEETT-T---------EEEEEECSSSSCCEEEE
T ss_pred EEECC-CCcEEEEECCCCCCCceeEEEC---CCCCEEEeccCCceEEEECCC-C---------ceEEEeCCCCCCccceE
Confidence 11111 1111 11223345678899999 888877776678899999983 3 2211 122345678888
Q ss_pred EeecCCCCcEEEeeCCCeEEEee
Q 018858 325 CTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 325 ~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++ + ++.+.++.. .+.+..++
T Consensus 273 ~~-~-~g~l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 273 CF-D-GETIWFAME-CDKIGKLT 292 (299)
T ss_dssp EE-C-SSCEEEEET-TTEEEEEE
T ss_pred Ee-c-CCCEEEEec-CCcEEEEE
Confidence 88 5 776555444 45555555
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=8.8e-16 Score=126.96 Aligned_cols=243 Identities=9% Similarity=-0.005 Sum_probs=161.7
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
..|.++.|+++ +..++..+.++.++.| .++....+..+...+.+++|+++++.++++..++.|.+||.++++...
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~- 80 (333)
T 2dg1_A 6 QDLPTLFYSGK-SNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR- 80 (333)
T ss_dssp CCCCBCCSCGG-GGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-
T ss_pred cccceeeecCC-ccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-
Confidence 45778889998 6777777888999999 355666777777788999999999977788889999999988654322
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCC----CcEEEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDG----GDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
+. ..+...+.+++++|+++++++...+ +.|.+||..+++....+. ......+.+++++|
T Consensus 81 ~~--~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-------------- 144 (333)
T 2dg1_A 81 PF--VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-------------- 144 (333)
T ss_dssp EE--ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT--------------
T ss_pred Ee--eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC--------------
Confidence 11 1234679999999999888877666 689999988765432222 02344677888888
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcC------CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKG------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
+++++++... .+.|..+|..+++
T Consensus 145 ----------------------~g~l~v~~~~~~~~~~~~~l~~~~~~~~~----------------------------- 173 (333)
T 2dg1_A 145 ----------------------KGGFYFTDFRGYSTNPLGGVYYVSPDFRT----------------------------- 173 (333)
T ss_dssp ----------------------TSCEEEEECCCBTTBCCEEEEEECTTSCC-----------------------------
T ss_pred ----------------------CCCEEEEeccccccCCCceEEEEeCCCCE-----------------------------
Confidence 7777776543 2455555554321
Q ss_pred eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEE-EEeeCCCeEEEEecCC-CcceecccccceeeeccccccceE
Q 018858 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKKVN 322 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l-~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~ 322 (349)
...+..+...+..++|+ |++++| ++.+.++.|++||+.. +....... ........++ ..+.
T Consensus 174 ------------~~~~~~~~~~~~~i~~~---~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~-~~~~~~~~~~-~~~~ 236 (333)
T 2dg1_A 174 ------------VTPIIQNISVANGIALS---TDEKVLWVTETTANRLHRIALEDDGVTIQPFG-ATIPYYFTGH-EGPD 236 (333)
T ss_dssp ------------EEEEEEEESSEEEEEEC---TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-EEEEEECCSS-SEEE
T ss_pred ------------EEEeecCCCcccceEEC---CCCCEEEEEeCCCCeEEEEEecCCCcCccccc-ceEEEecCCC-CCCC
Confidence 00111122346889999 898855 4555678999999964 22111000 0011111222 4677
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+++.+ +++++++...++.|.+||.
T Consensus 237 ~i~~d~-~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 237 SCCIDS-DDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEEEBT-TCCEEEEEETTTEEEEECT
T ss_pred ceEECC-CCCEEEEEcCCCEEEEECC
Confidence 889977 7777776677889999985
No 183
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=9.3e-16 Score=129.56 Aligned_cols=213 Identities=7% Similarity=-0.015 Sum_probs=143.2
Q ss_pred EEECCCCcEEEEeecCCCCeEE-----EEEecCCCEEEEEeC-CC--eEEEEEccCCCcccceeeccCcccceEEEEEcc
Q 018858 42 WFDLRSKDVQLVTDVGNGPVTS-----LCFKSGNEDIIYVSS-GK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 42 vwd~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (349)
.+|..++..+..+..|...... .+|+|+|++|+.++. ++ .|.+||+.+++.. .....+...+..++|+|
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---~lt~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT---QLTEGRGDNTFGGFLSP 90 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE---ECCCSSCBCSSSCEECT
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE---EeeeCCCCCccceEEcC
Confidence 3466677777777777666655 789999999999887 66 4888898876432 22233334444678999
Q ss_pred CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEE--EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 114 KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ--FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 114 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
+++.|+.++.++.|++||+.+++...... .+...+.... ++|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~----------------------------------- 134 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEENVVYQ-VPAEWVGYGTWVANS----------------------------------- 134 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECT-----------------------------------
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeeee-chhhcccccceeECC-----------------------------------
Confidence 99999999998999999999887765555 4444443333 356
Q ss_pred CCCcEEEEE----------------------cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec
Q 018858 192 KTNKICVVA----------------------KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 249 (349)
Q Consensus 192 ~~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
++..++.. ..+..|.+||+.+++
T Consensus 135 -dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---------------------------------- 179 (388)
T 3pe7_A 135 -DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---------------------------------- 179 (388)
T ss_dssp -TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC----------------------------------
T ss_pred -CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc----------------------------------
Confidence 56665531 234678888877631
Q ss_pred CceeeeeeeeecCCCcceEEEEEeeecC-CccEEEEeeCC------CeEEEEecCCCcceecccccceeeeccccc--cc
Q 018858 250 GGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGND------KLVKVWDCSRFQGVQTSINNDLLIKNINLN--KK 320 (349)
Q Consensus 250 ~~~~~~~~~~~~~h~~~i~~i~~~~~~~-~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 320 (349)
...+..+...+..+.|+ | +|+.|+..+.+ ..|+++|..... . ..+..+. ..
T Consensus 180 -------~~~l~~~~~~~~~~~~s---p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---------~-~~l~~~~~~~~ 239 (388)
T 3pe7_A 180 -------STVILQENQWLGHPIYR---PYDDSTVAFCHEGPHDLVDARMWLINEDGTN---------M-RKVKTHAEGES 239 (388)
T ss_dssp -------EEEEEEESSCEEEEEEE---TTEEEEEEEEECSCTTTSSCSEEEEETTSCC---------C-EESCCCCTTEE
T ss_pred -------eEEeecCCccccccEEC---CCCCCEEEEEEecCCCCCcceEEEEeCCCCc---------e-EEeeeCCCCcc
Confidence 12233345668899999 9 99988877653 378888877642 2 2223333 35
Q ss_pred eEEEEeecCCCCcEEEeeC-C----CeEEEeeCC
Q 018858 321 VNWLCTTPTESENLVVCDT-S----KVVKVYSIS 349 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~-d----g~i~iw~~~ 349 (349)
+...+|+| ||+.|+..+. + ..|++||+.
T Consensus 240 ~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 240 CTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp EEEEEECT-TSSCEEEEEEETTCCCEEEEEECTT
T ss_pred cccceECC-CCCEEEEEecCCCCCcceEEEEecC
Confidence 77888988 8887766543 2 239999863
No 184
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.74 E-value=2.1e-14 Score=117.64 Aligned_cols=250 Identities=10% Similarity=0.052 Sum_probs=162.0
Q ss_pred eeeeCCceeeeEEEEecCCCceEEE-------eCCCCcEEEEECCCCcEEEEee----cCCCCeEEEEEecC-CCEEEEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVAS-------SGEDGCICWFDLRSKDVQLVTD----VGNGPVTSLCFKSG-NEDIIYV 76 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t-------~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~ 76 (349)
..+...-....+++|+++ +.++++ +..++.|.+||..+++...... ++...+..++++++ ++.++ +
T Consensus 11 ~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~ 88 (314)
T 1pjx_A 11 TKVTEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-A 88 (314)
T ss_dssp EEEECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-E
T ss_pred hhhhccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-E
Confidence 344444455678999987 777777 5678899999988877543221 13467889999998 65444 4
Q ss_pred eCCCeEEEEEccCCCcccc-eeecc-CcccceEEEEEccCCCEEEEEcCC---------------CcEEEEEcCCceEec
Q 018858 77 SSGKEVKSFDVHMPASWRP-LESYN-YNKEEINQIVCNPKSSFLACADDG---------------GDVKIIDIRQHCLYK 139 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~ 139 (349)
+..+.|.+||.+ ++.... ..... .....+..+++.++++++++...+ +.|..||.. ++...
T Consensus 89 ~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 89 DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 445579999987 543221 11111 112457899999999887776654 567777765 44332
Q ss_pred eeccccccceeEEEEc----cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE-EEcCCCeEEEEEcc-C
Q 018858 140 SLRAGHSSICSSVQFI----PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIE-S 213 (349)
Q Consensus 140 ~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~-~ 213 (349)
... .......++++ | +++.+. +...++.|.+||.. .
T Consensus 167 ~~~--~~~~~~~i~~~~~~d~------------------------------------dg~~l~v~~~~~~~i~~~~~~~~ 208 (314)
T 1pjx_A 167 VDT--AFQFPNGIAVRHMNDG------------------------------------RPYQLIVAETPTKKLWSYDIKGP 208 (314)
T ss_dssp EEE--EESSEEEEEEEECTTS------------------------------------CEEEEEEEETTTTEEEEEEEEET
T ss_pred ecc--CCCCcceEEEecccCC------------------------------------CCCEEEEEECCCCeEEEEECCCC
Confidence 222 33345677887 7 675554 44567899999976 2
Q ss_pred ceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCC-cceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 214 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
+.. ........+..+. ..+..++++ ++|+++++...++.|.
T Consensus 209 g~~-----------------------------------~~~~~~~~~~~~~~~~p~~i~~d---~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 209 AKI-----------------------------------ENKKVWGHIPGTHEGGADGMDFD---EDNNLLVANWGSSHIE 250 (314)
T ss_dssp TEE-----------------------------------EEEEEEEECCCCSSCEEEEEEEB---TTCCEEEEEETTTEEE
T ss_pred Ccc-----------------------------------ccceEEEECCCCCCCCCCceEEC---CCCCEEEEEcCCCEEE
Confidence 210 0001222333443 567889999 8999888887889999
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEe-eCCCeEEEeeC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC-DTSKVVKVYSI 348 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~ 348 (349)
+||..++ ..+.....+...+.++++.+ +++.|+.+ ..++.|..|++
T Consensus 251 ~~d~~~g---------~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 251 VFGPDGG---------QPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EECTTCB---------SCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEEC
T ss_pred EEcCCCC---------cEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeC
Confidence 9998865 23333334556789999976 77755554 56688988885
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.73 E-value=4.3e-14 Score=123.89 Aligned_cols=273 Identities=14% Similarity=0.079 Sum_probs=173.3
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc--CCCcccceeeccCcccc
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH--MPASWRPLESYNYNKEE 105 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~ 105 (349)
+.++++...++.|.++|..+++.+..+... ..+..+.++|+|+++++++.++.|.+||+. +++.. ..+.. ...
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v---~~i~~-G~~ 241 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV---AEIKI-GSE 241 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE---EEEEC-CSE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe---EEEec-CCC
Confidence 456777888899999999999998888743 457799999999999999999999999995 54333 33322 234
Q ss_pred eEEEEEc----cCCCEEEEEcC-CCcEEEEEcCCceEeceecccc-----------ccceeEEEEccCCCCCCCCCCCCC
Q 018858 106 INQIVCN----PKSSFLACADD-GGDVKIIDIRQHCLYKSLRAGH-----------SSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 106 v~~~~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
...++|+ |+|+++++++. ++.|.++|..+.+++..+. .. ...+..+..+++
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~-~~~~~~~~~~~~p~~rva~i~~s~~------------ 308 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS-TRGMTYDEQEYHPEPRVAAILASHY------------ 308 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE-CCEECTTTCCEESCCCEEEEEECSS------------
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe-ccccccccccccCCCceEEEEEcCC------------
Confidence 6789999 69998877664 5889999999988887765 21 113455555552
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 249 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
....++....+|.|.++|....................+.|+|+|++++++...+..
T Consensus 309 -----------------------~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~ 365 (567)
T 1qks_A 309 -----------------------RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 365 (567)
T ss_dssp -----------------------SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred -----------------------CCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe
Confidence 234555556779999999876433222222233455678899999998764322111
Q ss_pred C----ceeeeeeeee-----cCCCcceEEEEEeeecCC-ccEEEEee-CCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 250 G----GKRLHLDYSV-----GGHTAAASCVAFSMFGER-GKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 250 ~----~~~~~~~~~~-----~~h~~~i~~i~~~~~~~~-~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
+ ....+....+ ..|.+.-..+ ++ |+ +...+++. .++.|.++|........ ..-+.+.......
T Consensus 366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~---p~~g~v~~t~~~g~~~Vsvid~~~~~~~~--~~~kvv~~i~~~g 439 (567)
T 1qks_A 366 LVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VH---PTFGPVWATSHMGDDSVALIGTDPEGHPD--NAWKILDSFPALG 439 (567)
T ss_dssp EEEEETTTTEEEEEEECSSSSBCCTTCEEE-EE---TTTEEEEEEEBSSSSEEEEEECCTTTCTT--TBTSEEEEEECSC
T ss_pred EEEEECCCCcEEEEEeccCcCCCCccceee-EC---CCCCcEEEeCCCCCCeEEEecCCCCCCcc--ccCEEEEEEecCC
Confidence 1 1111222111 1243222122 45 76 44445553 46899999998732100 0003334433333
Q ss_pred cceEEEEeecCCCCcEEEeeC-------CCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCDT-------SKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~-------dg~i~iw~~ 348 (349)
..-..+..+| ++++|.+... ...|.++|+
T Consensus 440 ~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 440 GGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp SCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred CCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEEC
Confidence 3334466777 7878887652 358999886
No 186
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1.7e-14 Score=116.50 Aligned_cols=200 Identities=11% Similarity=0.117 Sum_probs=141.6
Q ss_pred CceeeeEEEEecCCCceEEEeCC-CCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 14 HKATATCCIASRDRPGFVASSGE-DGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
|...+.++++.+.++.++++... ++.|.+|| .+++.+..+.. +...+..++++|+++.+++...++.|.+||.. ++
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence 44567889995433666666643 78999999 56776666643 34578999999999977777778999999965 32
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccc--ccceeEEEEccCCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH--SSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
....+.. ..+...+..++++++++++++...++.|++||.. ++.+..+. .. ...+..++++|
T Consensus 153 ~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~-~~g~~~~p~~i~~d~------------- 216 (286)
T 1q7f_A 153 VLHKFGC-SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIG-GEGITNYPIGVGINS------------- 216 (286)
T ss_dssp EEEEEEC-TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEES-CTTTSCSEEEEEECT-------------
T ss_pred EEEEeCC-CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEc-cCCccCCCcEEEECC-------------
Confidence 2222211 1233568899999999988888888999999974 45555554 22 24677888888
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCC-eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
+++++++...++ .|.+||....
T Consensus 217 -----------------------~G~l~v~~~~~~~~i~~~~~~g~---------------------------------- 239 (286)
T 1q7f_A 217 -----------------------NGEILIADNHNNFNLTIFTQDGQ---------------------------------- 239 (286)
T ss_dssp -----------------------TCCEEEEECSSSCEEEEECTTSC----------------------------------
T ss_pred -----------------------CCCEEEEeCCCCEEEEEECCCCC----------------------------------
Confidence 788888887775 9999996541
Q ss_pred cCceeeeeeeeecCC--CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 249 SGGKRLHLDYSVGGH--TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h--~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+..+..+ ...+.+++++ |+|+++++ +.|+.|++|++...
T Consensus 240 -------~~~~~~~~~~~~~~~~i~~~---~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 240 -------LISALESKVKHAQCFDVALM---DDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -------EEEEEEESSCCSCEEEEEEE---TTTEEEEE-ETTTEEEEEECSCC
T ss_pred -------EEEEEcccCCCCcceeEEEC---CCCcEEEE-CCCCeEEEEEcccc
Confidence 11222222 2347789999 89987777 57999999998664
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=8.1e-16 Score=130.22 Aligned_cols=269 Identities=5% Similarity=-0.063 Sum_probs=155.9
Q ss_pred EEECCCCcEEEEeecCCCC-----eEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEcc
Q 018858 42 WFDLRSKDVQLVTDVGNGP-----VTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 42 vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (349)
..|..+++.+..+..+... +..++|+|+|++|+..... ..|.+||+.+++.. .+ ..........+.|+|
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l--~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-QL--TEGKGDNTFGGFIST 90 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE-EC--CCSSCBCTTTCEECT
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE-Ee--ecCCCCccccceECC
Confidence 3466777766666554333 6678999999998877543 37888898865422 11 111112223378999
Q ss_pred CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC
Q 018858 114 KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 193 (349)
Q Consensus 114 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
++++|+.++.++.|++||+.+++...... .+.. |.|++.++........ ........+++| +
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~-~~~~------~~~~g~~l~~~~~~~~-----~~~~~~~~~~sp------d 152 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQVIYT-VDEE------WKGYGTWVANSDCTKL-----VGIEILKRDWQP------L 152 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTT------EEEEEEEEECTTSSEE-----EEEEEEGGGCCC------C
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEEEEe-cccc------cCCCCCEEEeccCCcc-----ccccccccccCC------C
Confidence 99999999988899999998877654443 2322 2222111100000000 000001123333 6
Q ss_pred CcEEEEE-----cCCCeEEEEEccCceeeeecCCCCCCccceeeeec-cccEEEEeeeeee-----cCce---eeeeeee
Q 018858 194 NKICVVA-----KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILDQ-----SGGK---RLHLDYS 259 (349)
Q Consensus 194 ~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~---~~~~~~~ 259 (349)
++.++.. ..+..|.+||+.+++..... .....+..+.|+| +++.+++...... .+.. .......
T Consensus 153 g~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~ 230 (396)
T 3c5m_A 153 TSWEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK 230 (396)
T ss_dssp CSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE
T ss_pred CcceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE
Confidence 6665544 35678999999876654433 2335567889999 8887776432110 0100 0011122
Q ss_pred ecCC--CcceEEEEEeeecCCccEEEEeeCC-----CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC
Q 018858 260 VGGH--TAAASCVAFSMFGERGKYLISGGND-----KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 332 (349)
Q Consensus 260 ~~~h--~~~i~~i~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 332 (349)
+..+ ...+..+.|+ |+|++|+.++.+ +.|++||+.+++. ..+....+ .. +.|+|.+++
T Consensus 231 l~~~~~~~~~~~~~~s---pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~----~~-~~~s~~dg~ 295 (396)
T 3c5m_A 231 IKEHAEGESCTHEFWI---PDGSAMAYVSYFKGQTDRVIYKANPETLEN-------EEVMVMPP----CS-HLMSNFDGS 295 (396)
T ss_dssp SSCCCTTEEEEEEEEC---TTSSCEEEEEEETTTCCEEEEEECTTTCCE-------EEEEECCS----EE-EEEECSSSS
T ss_pred eeccCCCccccceEEC---CCCCEEEEEecCCCCccceEEEEECCCCCe-------EEeeeCCC----CC-CCccCCCCc
Confidence 2222 2357788999 899988777544 4599999988632 11111111 22 678765777
Q ss_pred cEEEee----------------CCCeEEEeeC
Q 018858 333 NLVVCD----------------TSKVVKVYSI 348 (349)
Q Consensus 333 ~l~~~~----------------~dg~i~iw~~ 348 (349)
++++++ .++.|++||+
T Consensus 296 ~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEECCC----------CCCCCCEEEEEET
T ss_pred eEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 777654 3478999986
No 188
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.69 E-value=9.5e-14 Score=117.54 Aligned_cols=254 Identities=10% Similarity=0.025 Sum_probs=162.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC--eEEEEEccCCCcc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK--EVKSFDVHMPASW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~ 93 (349)
.....++|+++ ++++++...++.|++||..+++........ .... ++|+++++.|+++..++ .|.+++...+...
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 35778999998 788888777899999999887765554443 3334 99999999999888765 7888888754332
Q ss_pred cceeeccC-cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEece----eccccccce-e-EEEEccCCCCCCCCCC
Q 018858 94 RPLESYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS----LRAGHSSIC-S-SVQFIPWKPWEGLPEN 166 (349)
Q Consensus 94 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~v-~-~~~~~~~~~~~~~~~~ 166 (349)
..+..... ....+.+++++|++..|+++..++.|+.||..++..... .. +....- . .++|+|+
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~-g~~~~~P~~~ia~~p~--------- 277 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS-GSLGTNPGPYLIYYFV--------- 277 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC-SCCCCSSCCEEEEETT---------
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc-CCCCCCccccEEEeCC---------
Confidence 22211111 335678899999655566577788999999986653221 11 111111 2 7888873
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
++.++++-..++.|+.|+.........-.... .+
T Consensus 278 --------------------------~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~------------------~g-- 311 (409)
T 3hrp_A 278 --------------------------DSNFYMSDQNLSSVYKITPDGECEWFCGSATQ------------------KT-- 311 (409)
T ss_dssp --------------------------TTEEEEEETTTTEEEEECTTCCEEEEEECTTC------------------CS--
T ss_pred --------------------------CCEEEEEeCCCCEEEEEecCCCEEEEEeCCCC------------------CC--
Confidence 35666666778899999876421100000000 00
Q ss_pred eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeecccc--------
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINL-------- 317 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-------- 317 (349)
.... ......-.....++++ ++|+++++-. .++.|+.|++.++.. ..+.++
T Consensus 312 ----~~dg---~~~~~~~~~P~gia~d---~dG~lyvad~~~~~~I~~~~~~~G~v----------~~~~g~~~~~g~~~ 371 (409)
T 3hrp_A 312 ----VQDG---LREEALFAQPNGMTVD---EDGNFYIVDGFKGYCLRKLDILDGYV----------STVAGQVDVASQID 371 (409)
T ss_dssp ----CBCE---EGGGCBCSSEEEEEEC---TTCCEEEEETTTTCEEEEEETTTTEE----------EEEEECTTCBSCCC
T ss_pred ----cCCC---cccccEeCCCeEEEEe---CCCCEEEEeCCCCCEEEEEECCCCEE----------EEEeCCCCCCCcCC
Confidence 0000 0000112346899999 8999888877 889999999877532 111111
Q ss_pred -------ccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 318 -------NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 318 -------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
-.....+++.+ ++.++++-..++.|+.++++
T Consensus 372 g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 372 GTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp BSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEEC
T ss_pred CChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEeC
Confidence 24578999988 57666666788899888764
No 189
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.69 E-value=1.2e-14 Score=132.87 Aligned_cols=242 Identities=10% Similarity=0.017 Sum_probs=153.0
Q ss_pred CceeeeEEEEecCCCceEEEeCCC-----CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCe-------
Q 018858 14 HKATATCCIASRDRPGFVASSGED-----GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE------- 81 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 81 (349)
|...+..++|||+ +++|+.+..+ ..|++||+.+++.+.... +...+..++|+|+ +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 161 GATALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp --EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 4457889999999 7877765433 469999999998754311 2222356889999 99998886543
Q ss_pred -------EEEEEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcCCC-----cEEEEEcCCc--eEeceeccccc
Q 018858 82 -------VKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDIRQH--CLYKSLRAGHS 146 (349)
Q Consensus 82 -------i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~ 146 (349)
|++|++.++... ..+.....+...+..+.|+|+|++|+..+.++ .|++||+.++ +....+. .+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~ 316 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI-PDL 316 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-CSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-CCC
Confidence 889998765421 12222222333578999999999988776543 7999999876 3134444 333
Q ss_pred cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC----CCeEEEEEccCceeeeecCC
Q 018858 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----DGVVDVINIESELNISRSKS 222 (349)
Q Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~ 222 (349)
....... .| +++.|+..+. ++.|.+||+.+..
T Consensus 317 ~~~~~~~-~~------------------------------------dg~~l~~~s~~~~~~~~l~~~d~~~~~------- 352 (741)
T 1yr2_A 317 KAQWDFV-DG------------------------------------VGDQLWFVSGDGAPLKKIVRVDLSGST------- 352 (741)
T ss_dssp SSCEEEE-EE------------------------------------ETTEEEEEECTTCTTCEEEEEECSSSS-------
T ss_pred CceEEEE-ec------------------------------------cCCEEEEEECCCCCCCEEEEEeCCCCc-------
Confidence 3333332 36 6777766654 3568899987520
Q ss_pred CCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC-CCcc
Q 018858 223 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS-RFQG 301 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~ 301 (349)
. .....+..+...+..+.++ ++.++++...|+..+||.+. .+
T Consensus 353 -----------------------------~--~~~~l~~~~~~~l~~~~~~----~~~lv~~~~~dg~~~l~~~~~~g-- 395 (741)
T 1yr2_A 353 -----------------------------P--RFDTVVPESKDNLESVGIA----GNRLFASYIHDAKSQVLAFDLDG-- 395 (741)
T ss_dssp -----------------------------C--EEEEEECCCSSEEEEEEEE----BTEEEEEEEETTEEEEEEEETTS--
T ss_pred -----------------------------c--ccEEEecCCCCeEEEEEEE----CCEEEEEEEECCEEEEEEEeCCC--
Confidence 0 1112223344456667775 56788888889887777654 22
Q ss_pred eecccccceeeecc-ccccceEEEEeecCCCCcEE-Eee---CCCeEEEeeC
Q 018858 302 VQTSINNDLLIKNI-NLNKKVNWLCTTPTESENLV-VCD---TSKVVKVYSI 348 (349)
Q Consensus 302 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~-~~~---~dg~i~iw~~ 348 (349)
.....+. .....+..+.++| +++.|+ +.+ ..+.|++||+
T Consensus 396 -------~~~~~l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 396 -------KPAGAVSLPGIGSASGLSGRP-GDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp -------CEEEECBCSSSCEEEEEECCB-TCSCEEEEEEETTEEEEEEEEET
T ss_pred -------CceeeccCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEEC
Confidence 2222332 2456788888988 555555 332 4588999986
No 190
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=2.9e-13 Score=118.70 Aligned_cols=300 Identities=10% Similarity=0.012 Sum_probs=188.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC--CCcEEEEeecCCCCeEEEEEe----cCCCEEEEEe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDVGNGPVTSLCFK----SGNEDIIYVS 77 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~ 77 (349)
+++.+.++... ..+..+.|+|+ ++++++++.|+.|.+||+. +++.+..+... .....++|+ |+|+++++++
T Consensus 186 t~~v~~~i~~g-~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n 262 (567)
T 1qks_A 186 TYEIKTVLDTG-YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGA 262 (567)
T ss_dssp TCCEEEEEECS-SCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEE
T ss_pred CCeEEEEEeCC-CCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEE
Confidence 45566666643 34568999998 8999999999999999995 78888887753 346789999 6999998887
Q ss_pred C-CCeEEEEEccCCCcccceeeccC-------c-ccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCceEe--ceecccc
Q 018858 78 S-GKEVKSFDVHMPASWRPLESYNY-------N-KEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLY--KSLRAGH 145 (349)
Q Consensus 78 ~-dg~i~iwd~~~~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~ 145 (349)
. ++.|.++|..+.+..+.+..... | ...+..+..++++. +++....+|.|.++|....+.+ ..+. .
T Consensus 263 ~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~--~ 340 (567)
T 1qks_A 263 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS--A 340 (567)
T ss_dssp EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE--C
T ss_pred ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee--c
Confidence 5 48999999887655544432110 1 12567788888764 4555667799999998765432 2222 3
Q ss_pred ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCC-C
Q 018858 146 SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKS-T 223 (349)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~ 223 (349)
......+.|+| ++++|+++. .++.|.++|+.+++....... .
T Consensus 341 ~~~~~d~~~~p------------------------------------dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg 384 (567)
T 1qks_A 341 ERFLHDGGLDG------------------------------------SHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 384 (567)
T ss_dssp CSSEEEEEECT------------------------------------TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred cccccCceECC------------------------------------CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence 34456778888 788876655 678999999999876655433 1
Q ss_pred C-CCccceee-eeccccEE-EEe--eeeeecCc--ee-------eeeeeeecCCCcceEEEEEeeecCCccEEEEeeC--
Q 018858 224 T-KPLKGSQS-TSKVNIRD-AEM--EILDQSGG--KR-------LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-- 287 (349)
Q Consensus 224 ~-~~~~~~~~-~~~~~~~~-~~~--~~~~~~~~--~~-------~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~-- 287 (349)
. ..+-+... ++|++..+ ++. +....... .. ++.+.++......-..+..+ |+++++.+...
T Consensus 385 ~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~---p~~~~l~v~~~~~ 461 (567)
T 1qks_A 385 QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTH---PNSQYLYVDATLN 461 (567)
T ss_dssp SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC---TTCSEEEEECTTC
T ss_pred cCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeC---CCCCeEEEecCCC
Confidence 1 11112333 57774444 332 11111111 11 34445554432222346667 89999888662
Q ss_pred -----CCeEEEEecCCCcceecccccceeee-----ccccccceEEEEeecCCCCcEEEee-----CCCeEEEeeC
Q 018858 288 -----DKLVKVWDCSRFQGVQTSINNDLLIK-----NINLNKKVNWLCTTPTESENLVVCD-----TSKVVKVYSI 348 (349)
Q Consensus 288 -----d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~iw~~ 348 (349)
...|.|+|+.+.+.......-..+.. +..-...+..+.|++ +|+.+..+. .++.|.|+|.
T Consensus 462 ~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 462 PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp SSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEET
T ss_pred CCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC-CCCEEEEEeecCCCCCCcEEEEEC
Confidence 35899999987611000000011100 011234788899988 777666552 3789999884
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.68 E-value=2.3e-12 Score=104.56 Aligned_cols=275 Identities=7% Similarity=-0.026 Sum_probs=177.9
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE-EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
....+.++++.++ +++.++...++.|.+||.. ++... .+......+..+++.++++..++...++.|..+|.. ++.
T Consensus 18 ~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 4567889999998 7877777778999999988 55433 223334678999999999877776667889999877 432
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEece-eccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
..+ ........+..+++.++++++++...++.|..+|.. ++.... +. .....+.++++.+
T Consensus 95 -~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~~~i~~d~--------------- 155 (300)
T 2qc5_A 95 -TEY-PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP-NKGSYPAFITLGS--------------- 155 (300)
T ss_dssp -EEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS-STTCCEEEEEECT---------------
T ss_pred -EEe-cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC-CCCCCceeEEECC---------------
Confidence 222 222223568899999999888887778889999987 544322 22 2345677788877
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee---eee
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---LDQ 248 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 248 (349)
+++++++...++.|..||.. ++...............++++++|...++... ...
T Consensus 156 ---------------------~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 156 ---------------------DNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp ---------------------TSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred ---------------------CCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence 67877766667899999984 43333222222345678899999887765311 111
Q ss_pred cCceeeee-eeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee
Q 018858 249 SGGKRLHL-DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 249 ~~~~~~~~-~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
... .... ...+..+...+.+++++ ++|++.++...++.|..||.. +. ............+.++++.
T Consensus 214 ~~~-~g~~~~~~~~~~~~~~~~i~~d---~~g~l~v~~~~~~~i~~~~~~-g~--------~~~~~~~~~~~~~~~i~~~ 280 (300)
T 2qc5_A 214 ITT-TGEISEYDIPTPNARPHAITAG---KNSEIWFTEWGANQIGRITND-NT--------IQEYQLQTENAEPHGITFG 280 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEEC---STTCEEEEETTTTEEEEECTT-SC--------EEEEECCSTTCCCCCEEEC
T ss_pred EcC-CCcEEEEECCCCCCCceEEEEC---CCCCEEEeccCCCeEEEECCC-Cc--------EEEEECCccCCccceeEeC
Confidence 111 1111 11223344568899999 888877777677899999984 31 1111122234567888887
Q ss_pred cCCCCcEEEeeCCCeEEEeeC
Q 018858 328 PTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+ ++++.+ ++.. .|..++.
T Consensus 281 ~-~g~l~v-~~~~-~i~~~~p 298 (300)
T 2qc5_A 281 K-DGSVWF-ALKC-KIGKLNL 298 (300)
T ss_dssp T-TSCEEE-ECSS-EEEEEEE
T ss_pred C-CCCEEE-EccC-ceEEeCC
Confidence 7 676444 4444 6666653
No 192
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.68 E-value=5e-13 Score=108.44 Aligned_cols=238 Identities=13% Similarity=0.106 Sum_probs=154.3
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
+..+..--.+..|+|+++.++++...++.|..||..+++. ..+. ....+.++++++++++++ +. ++.|.+||.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEE-EE-CCeEEEEECCCC
Confidence 3344445668899997577788888889999999988765 3333 456799999999999544 44 567999998865
Q ss_pred Ccccceeecc--CcccceEEEEEccCCCEEEEEcCC---------CcEEEEEcC-CceEeceeccccccceeEEEEccCC
Q 018858 91 ASWRPLESYN--YNKEEINQIVCNPKSSFLACADDG---------GDVKIIDIR-QHCLYKSLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 91 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (349)
+. ..+.... .....+..+++.|+|+++++.... ..-.+|.+. .++... +. ........++|+|
T Consensus 84 ~~-~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~-~~~~~pngi~~sp-- 158 (297)
T 3g4e_A 84 SA-VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YF-DQVDISNGLDWSL-- 158 (297)
T ss_dssp EE-EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EE-EEESBEEEEEECT--
T ss_pred cE-EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Ee-eccccccceEEcC--
Confidence 42 2222211 112457889999999866654221 223444443 233322 22 2333456788888
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEcc--CceeeeecCCCCCCccceeeeec
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIE--SELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
+++.| ++.+.++.|..|++. ++..
T Consensus 159 ----------------------------------dg~~lyv~~~~~~~i~~~~~d~~~G~~------------------- 185 (297)
T 3g4e_A 159 ----------------------------------DHKIFYYIDSLSYSVDAFDYDLQTGQI------------------- 185 (297)
T ss_dssp ----------------------------------TSCEEEEEEGGGTEEEEEEECTTTCCE-------------------
T ss_pred ----------------------------------CCCEEEEecCCCCcEEEEeccCCCCcc-------------------
Confidence 67655 555678899999974 3210
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
...+....+..+...+..++++ ++|++.++...++.|.+||..++ +++..+.
T Consensus 186 ----------------~~~~~~~~~~~~~~~p~g~~~d---~~G~lwva~~~~~~v~~~d~~tG---------~~~~~i~ 237 (297)
T 3g4e_A 186 ----------------SNRRSVYKLEKEEQIPDGMCID---AEGKLWVACYNGGRVIRLDPVTG---------KRLQTVK 237 (297)
T ss_dssp ----------------EEEEEEEECCGGGCEEEEEEEB---TTSCEEEEEETTTEEEEECTTTC---------CEEEEEE
T ss_pred ----------------cCcEEEEECCCCCCCCCeeEEC---CCCCEEEEEcCCCEEEEEcCCCc---------eEEEEEE
Confidence 0012222333344567889999 89988888877889999999876 4555555
Q ss_pred ccccceEEEEeecCCCCcEEEee
Q 018858 316 NLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
.+...+++++|..++++.|++++
T Consensus 238 ~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 238 LPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp CSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCCceEEEEeCCCCCEEEEEc
Confidence 55678999999833666555554
No 193
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=9.2e-14 Score=114.54 Aligned_cols=211 Identities=10% Similarity=0.024 Sum_probs=148.3
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-EEEEe---------ecCCCCeEEEEEec-CCCEEEEEe-CCCe
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-VQLVT---------DVGNGPVTSLCFKS-GNEDIIYVS-SGKE 81 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~ 81 (349)
+-.....++++|+ ++++++...++.|++||..... .+..+ ..+......++++| ++..+++.+ .++.
T Consensus 89 ~~~~p~gia~d~~-g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 89 LFYLPHGLSIDTD-GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TCSSEEEEEECTT-SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred ccCCceEEEECCC-CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 3456788999998 7888888889999999986542 34444 23445688999999 788777776 6899
Q ss_pred EEEEEccCCCcccceeec-------cCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceecc-ccccceeEE
Q 018858 82 VKSFDVHMPASWRPLESY-------NYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSV 152 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~ 152 (349)
|++|+. +++....+... ..+......++++|+ +.++++...++.|++||..+++.+..+.. .+...+..+
T Consensus 168 I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 168 IVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred EEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 999994 34333222211 112234789999998 77777888889999999988888777741 345567788
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
+|+|. . .+. .+++.+++...+..|++|+..+++
T Consensus 247 ~~~pg-~-----------------------~~~------~~g~~~v~~~~~~~v~~~~~~~g~----------------- 279 (329)
T 3fvz_A 247 SYIPG-F-----------------------LFA------VNGKPYFGDQEPVQGFVMNFSSGE----------------- 279 (329)
T ss_dssp EEETT-E-----------------------EEE------EECCCCTTCSCCCCEEEEETTTCC-----------------
T ss_pred eecCC-E-----------------------EEE------eCCCEEeccCCCcEEEEEEcCCCe-----------------
Confidence 88871 0 000 034444444556689999988752
Q ss_pred eeccccEEEEeeeeeecCceeeeeeeee---cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 233 TSKVNIRDAEMEILDQSGGKRLHLDYSV---GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+..+ .++...+..++++ |+|.++++...++.|++|++...
T Consensus 280 -----------------------~~~~~~~~~~~~~~p~~ia~~---~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 280 -----------------------IIDVFKPVRKHFDMPHDIVAS---EDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp -----------------------EEEEECCSSSCCSSEEEEEEC---TTSEEEEEESSSCCEEEEEEEEC
T ss_pred -----------------------EEEEEcCCCCccCCeeEEEEC---CCCCEEEEECCCCEEEEEeCCcc
Confidence 22222 3456678999999 89988888889999999998653
No 194
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=2.6e-14 Score=118.76 Aligned_cols=215 Identities=12% Similarity=0.035 Sum_probs=138.9
Q ss_pred CCeEEEEEecCCCEEEEEe---------CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC---C-
Q 018858 59 GPVTSLCFKSGNEDIIYVS---------SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG---G- 125 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g- 125 (349)
..+...++ +|++++... .++.|.+||+.+++. ..+ ..+..++|+|+|++|+..+.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI-------ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE-------ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc-------ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 34566667 788877653 256799999987642 222 457889999999999877653 2
Q ss_pred -cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC--
Q 018858 126 -DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-- 202 (349)
Q Consensus 126 -~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 202 (349)
.|++||+.+++...... ... +..++|+| +++.|+.++.
T Consensus 85 ~~l~~~~~~~g~~~~l~~--~~~-~~~~~wsp------------------------------------dg~~l~~~~~~~ 125 (347)
T 2gop_A 85 SEIWVADLETLSSKKILE--AKN-IRSLEWNE------------------------------------DSRKLLIVGFKR 125 (347)
T ss_dssp EEEEEEETTTTEEEEEEE--ESE-EEEEEECT------------------------------------TSSEEEEEEECC
T ss_pred ceEEEEECCCCceEEEEc--CCC-ccceeECC------------------------------------CCCEEEEEEccC
Confidence 38888988887655444 333 88999999 6666666542
Q ss_pred -------------------------CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec----C-ce
Q 018858 203 -------------------------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----G-GK 252 (349)
Q Consensus 203 -------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~ 252 (349)
...|.+||+.+++....+.. . .+..+.|+||| .+++ +..+.. . ..
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~-~~~~~~~~~~~~~~ 200 (347)
T 2gop_A 126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVN-VPHREIIPQYFKFW 200 (347)
T ss_dssp CC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEE-EECCCSSCCSSCCE
T ss_pred CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEE-Eecccccccccccc
Confidence 25799999988766232222 2 67889999999 4443 322210 0 00
Q ss_pred ee-----eeeeeecCCCcceEEEEEeeecCCccEEEEeeCC--------CeEEEEecCCCcceecccccceeeecccccc
Q 018858 253 RL-----HLDYSVGGHTAAASCVAFSMFGERGKYLISGGND--------KLVKVWDCSRFQGVQTSINNDLLIKNINLNK 319 (349)
Q Consensus 253 ~~-----~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 319 (349)
.. .....+..+ ..+..+ + |+|++|+.++.+ ..|++|| ++ ........+..
T Consensus 201 ~l~~~d~~~~~~l~~~-~~~~~~--s---pdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---------~~~~l~~~~~~ 263 (347)
T 2gop_A 201 DIYIWEDGKEEKMFEK-VSFYAV--D---SDGERILLYGKPEKKYMSEHNKLYIYD--GK---------EVMGILDEVDR 263 (347)
T ss_dssp EEEEEETTEEEEEEEE-ESEEEE--E---ECSSCEEEEECCSSSCCCSSCEEEEEC--SS---------CEEESSTTCCS
T ss_pred cEEEeCCCceEEeccC-cceeeE--C---CCCCEEEEEEccccCCccccceEEEEC--CC---------ceEeccccCCc
Confidence 00 111222223 334433 6 899988877644 4688888 43 33334445667
Q ss_pred ceEE-EEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 320 KVNW-LCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 320 ~v~~-~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+.. +.|+ ++ ++++++.++.+++| +
T Consensus 264 ~~~~~~~~s--dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 264 GVGQAKIKD--GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp EEEEEEEET--TE-EEEEEEETTEEEEE-E
T ss_pred ccCCccEEc--Cc-EEEEEecCCcEEEE-E
Confidence 7776 7785 66 88888999999999 6
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.65 E-value=1.6e-12 Score=108.56 Aligned_cols=268 Identities=10% Similarity=-0.027 Sum_probs=164.2
Q ss_pred EecCCCceEEEeCC--CC---cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe----------CCCeEEEEEc
Q 018858 23 ASRDRPGFVASSGE--DG---CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSFDV 87 (349)
Q Consensus 23 ~~~~~~~~l~t~~~--dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~ 87 (349)
..|+ +++++.... .. .|.++|..+++.+..+.....+ .++++|++++++++. .++.|.+||.
T Consensus 28 ~~~~-~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 28 PGAD-GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCCC-CCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 3455 666666653 33 7899999999988888765444 899999999999886 3678999999
Q ss_pred cCCCcccceeec-cC---cccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEece-eccccccceeEEEEccCCCC
Q 018858 88 HMPASWRPLESY-NY---NKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 88 ~~~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 160 (349)
.+.+....+..- .. .......++|+|++++|+++.. ++.|.++| .+++.+.. +. . .. ++.+.|+
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-~-~~---~~~~~~~--- 175 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-S-PT---CYHIHPG--- 175 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-C-Cc---eEEEEeC---
Confidence 876544333221 00 0123557899999999998874 47899999 99988777 65 2 21 2444452
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC-----CCCCCccceeeeec
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK-----STTKPLKGSQSTSK 235 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~ 235 (349)
..+.+++.+.||.+.++|. +++...... ...........+.+
T Consensus 176 --------------------------------~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 176 --------------------------------APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred --------------------------------CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence 3355667778999999999 655442211 01111112234455
Q ss_pred cccEEEEeeee-eecC--c--eeeeeeeeecC----------CCcceEEEEEeeecCCccEEEEeeC----------CCe
Q 018858 236 VNIRDAEMEIL-DQSG--G--KRLHLDYSVGG----------HTAAASCVAFSMFGERGKYLISGGN----------DKL 290 (349)
Q Consensus 236 ~~~~~~~~~~~-~~~~--~--~~~~~~~~~~~----------h~~~i~~i~~~~~~~~~~~l~s~~~----------d~~ 290 (349)
++..++..... .... . ........+.- .......+.++ ++++.++.+.. ++.
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s---~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL---KSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC---CCCCEEEEEeccCCcccccCCCCe
Confidence 54333221100 0000 0 00011111110 01223346777 78887776543 357
Q ss_pred EEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC-cEEEee-CCCeEEEeeCC
Q 018858 291 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD-TSKVVKVYSIS 349 (349)
Q Consensus 291 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~iw~~~ 349 (349)
|.++|..+. +.+..+ ........++|+| |++ .++++. .++.|.++|+.
T Consensus 300 V~VID~~t~---------~vv~~i-~~g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 300 VTSVTGLVG---------QTSSQI-SLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EEEEECCCC---------EEEEEE-ECCCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECC
Confidence 999999987 443333 2333678999988 787 777776 58999999963
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.61 E-value=8.2e-13 Score=108.96 Aligned_cols=272 Identities=13% Similarity=0.005 Sum_probs=167.6
Q ss_pred EEEecCCCceEEEeCC-----CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe----------CCCeEEEE
Q 018858 21 CIASRDRPGFVASSGE-----DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSF 85 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw 85 (349)
....|+ ++.++.... ++.|.+.|..+++.+..+.....+ . ++++|+|+++++++ .++.|.+|
T Consensus 38 ~~~~pd-~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 38 EAPAPD-ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCC-TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccCCC-CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 445677 666666544 679999999999999998876666 4 99999999988876 35789999
Q ss_pred EccCCCcccceeeccC----cccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 86 DVHMPASWRPLESYNY----NKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
|..+.+....+..-.+ .......++++|+|++++++.. ++.|.++|+.+++.+.++. ... +....|.
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~-v~g----~~~~~P~-- 187 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPD----CYHIFPT-- 187 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCS----EEEEEEE--
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE-CCC----cceeecC--
Confidence 9998765544433110 0124567899999999888764 6889999999999988886 221 1122231
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-ceeeeec---CCCCCCcc-ceeeee
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRS---KSTTKPLK-GSQSTS 234 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~---~~~~~~~~-~~~~~~ 234 (349)
..+.+++.+.||.+.+.++.. ++..... .......+ ....|.
T Consensus 188 ---------------------------------g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 188 ---------------------------------APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS 234 (386)
T ss_dssp ---------------------------------ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE
T ss_pred ---------------------------------CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE
Confidence 345666777788888888865 3332211 11111112 123443
Q ss_pred -ccccEEEEeeeeeecCc----eeeeeeeeec---------C-CCcceEEEEEeeecCCccEEEEeeC----------CC
Q 018858 235 -KVNIRDAEMEILDQSGG----KRLHLDYSVG---------G-HTAAASCVAFSMFGERGKYLISGGN----------DK 289 (349)
Q Consensus 235 -~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~-h~~~i~~i~~~~~~~~~~~l~s~~~----------d~ 289 (349)
++|+++.++........ ........+. + .......+.++ ++++.++.... .+
T Consensus 235 ~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~---~~~~~lyV~~~~~~~~~hk~~~~ 311 (386)
T 3sjl_D 235 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH---RALDRIYLLVDQRDEWRHKTASR 311 (386)
T ss_dssp TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE---TTTTEEEEEEEECCTTCTTSCEE
T ss_pred cCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC---CCCCeEEEEeccccccccCCCCC
Confidence 56655433211111000 0001111110 0 11223346667 78877776542 25
Q ss_pred eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC-cEEEe-eCCCeEEEeeCC
Q 018858 290 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVC-DTSKVVKVYSIS 349 (349)
Q Consensus 290 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~-~~dg~i~iw~~~ 349 (349)
.|.+.|+.+.+ .+..+. -...+.++++++ |++ .|+++ ..++.|.++|..
T Consensus 312 ~V~viD~~t~k---------v~~~i~-vg~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 312 FVVVLDAKTGE---------RLAKFE-MGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EEEEEETTTCC---------EEEEEE-EEEEECEEEECS-SSSCEEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCe---------EEEEEE-CCCCcceEEECC-CCCeEEEEEcCCCCeEEEEECC
Confidence 79999999984 333222 234788999988 665 66665 468999999863
No 197
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.61 E-value=2.5e-12 Score=104.76 Aligned_cols=243 Identities=9% Similarity=-0.031 Sum_probs=153.5
Q ss_pred CCCeeeeCCceeeeEEEEecCCCc-eEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
..+..+..+........|+|+ ++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~-g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEA-QRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGG-GTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CceEEEecCCcCccCCeEeCC-CCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence 355666666667788999998 55 7788888899999998 454 3455556677899999999996665555678999
Q ss_pred EEccCCCcccceeeccCc-ccceEEEEEccCCCEEEE----EcC-------------CCcEEEEEcCCceEeceeccccc
Q 018858 85 FDVHMPASWRPLESYNYN-KEEINQIVCNPKSSFLAC----ADD-------------GGDVKIIDIRQHCLYKSLRAGHS 146 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~ 146 (349)
|+.. ++........... ...+..+++.|+|+++++ |.. .+.|+.+|..+++..... ..
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~ 187 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DL 187 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EE
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cC
Confidence 9875 4321111111111 134678999999998876 432 245777777655432211 12
Q ss_pred cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC------CeEEEEEccCceeeeec
Q 018858 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD------GVVDVINIESELNISRS 220 (349)
Q Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~ 220 (349)
.....++|+| +++.|+++... +.|..|++.... ..
T Consensus 188 ~~p~gl~~sp------------------------------------dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~-- 228 (305)
T 3dr2_A 188 DHPNGLAFSP------------------------------------DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LH-- 228 (305)
T ss_dssp SSEEEEEECT------------------------------------TSSEEEEEECCC---CCCEEEEEEEETTE-EE--
T ss_pred CCCcceEEcC------------------------------------CCCEEEEEecCCcCCCCCEEEEEEecCCC-cc--
Confidence 2356678888 78877766554 689999987531 00
Q ss_pred CCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 221 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
........ ..+.+..+.++ ++|++.++ ..+ .|.+|+...
T Consensus 229 --------------------------------~~~~~~~~--~~~~pdgi~~d---~~G~lwv~-~~~-gv~~~~~~g-- 267 (305)
T 3dr2_A 229 --------------------------------DRRHFASV--PDGLPDGFCVD---RGGWLWSS-SGT-GVCVFDSDG-- 267 (305)
T ss_dssp --------------------------------EEEEEECC--SSSCCCSEEEC---TTSCEEEC-CSS-EEEEECTTS--
T ss_pred --------------------------------CCeEEEEC--CCCCCCeEEEC---CCCCEEEe-cCC-cEEEECCCC--
Confidence 00111111 22345678888 89985544 444 499999854
Q ss_pred ceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEE
Q 018858 301 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 345 (349)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 345 (349)
..+..+.... .+..++|.+ +++.|+.++.++..++
T Consensus 268 --------~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 268 --------QLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPCLWML 302 (305)
T ss_dssp --------CEEEEEECSS-CCCEEEECT-TSCEEEEEETTEEEEE
T ss_pred --------CEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCeEEEE
Confidence 3333333333 578889985 7777888777654433
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.61 E-value=1.5e-13 Score=124.76 Aligned_cols=232 Identities=9% Similarity=-0.026 Sum_probs=142.0
Q ss_pred EecCCCceEEEeCCCC-----cEEEEECCCCcEEEEee------cCCCCeEEEEEecCCCEEEEE-----eCCCeEEEEE
Q 018858 23 ASRDRPGFVASSGEDG-----CICWFDLRSKDVQLVTD------VGNGPVTSLCFKSGNEDIIYV-----SSGKEVKSFD 86 (349)
Q Consensus 23 ~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd 86 (349)
.+|+ |++++....++ .|.+.+...++....+. +|...+..++|||+|++||.+ +.+..|++||
T Consensus 75 p~~d-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 75 PSRR-NGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp CEEE-TTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred CEEE-CCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 3477 66665444332 34444544454333332 344568899999999999854 3346899999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCc-------------EEEEEcCCce----Eeceeccccccce
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD-------------VKIIDIRQHC----LYKSLRAGHSSIC 149 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~----~~~~~~~~~~~~v 149 (349)
+.+++... ...+.. .....++|+||++.|+.++.+.. |++|++.++. .+.... .+...+
T Consensus 154 l~tg~~~~-~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~-~~~~~~ 229 (695)
T 2bkl_A 154 VDSGEWSK-VDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT-GDPTTF 229 (695)
T ss_dssp TTTCCBCS-SCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC-CCTTCE
T ss_pred CCCCCCcC-CcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC-CCCEEE
Confidence 99875431 111111 11267899999999998888765 9999998765 333333 344567
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC----eEEEEEccCceeeeecCCCCC
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG----VVDVINIESELNISRSKSTTK 225 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~ 225 (349)
..+.|+| +|++|+..+.++ .|.+++..++
T Consensus 230 ~~~~~Sp------------------------------------DG~~l~~~~~~~~~~~~l~~~~~~~~----------- 262 (695)
T 2bkl_A 230 LQSDLSR------------------------------------DGKYLFVYILRGWSENDVYWKRPGEK----------- 262 (695)
T ss_dssp EEEEECT------------------------------------TSCCEEEEEEETTTEEEEEEECTTCS-----------
T ss_pred EEEEECC------------------------------------CCCEEEEEEeCCCCceEEEEEcCCCC-----------
Confidence 8889999 788887776555 5666654331
Q ss_pred CccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee---CCCeEEEEecCCCcce
Q 018858 226 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGV 302 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~ 302 (349)
....+..+...+....+. +|.+++... .++.|++||+.++...
T Consensus 263 ------------------------------~~~~l~~~~~~~~~~~~~----~g~l~~~s~~~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 263 ------------------------------DFRLLVKGVGAKYEVHAW----KDRFYVLTDEGAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp ------------------------------SCEEEEECSSCCEEEEEE----TTEEEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred ------------------------------ceEEeecCCCceEEEEec----CCcEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 112223333444444444 455545444 3588999999775310
Q ss_pred ecccccceeeecccc-ccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 303 QTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 303 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
........+ ...+..++++ ++.++++...|+..++|.+
T Consensus 309 ------~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 309 ------SWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp ------GCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred ------CCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEE
Confidence 011122222 4467778885 5667888889999888854
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.60 E-value=6.7e-13 Score=109.23 Aligned_cols=215 Identities=8% Similarity=-0.027 Sum_probs=144.3
Q ss_pred CCCCcEEEEECCCCcEEEEee------cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEE
Q 018858 35 GEDGCICWFDLRSKDVQLVTD------VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (349)
Q Consensus 35 ~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (349)
+.++.|.++|.++++....+. ........+.+. .++..++...++.|.+||..+++....+.. ......
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~----~~~p~~ 88 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG----FTSPRY 88 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC----CSSEEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC----CCCCcE
Confidence 348999999999988765442 112345677774 344555556679999999998765444432 356888
Q ss_pred EEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccc-----cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEee
Q 018858 109 IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS-----SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIA 183 (349)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (349)
++++++++.+++...++.|.+||..+++....+. ... .....+++ .
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~-~--------------------------- 139 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQ-Y--------------------------- 139 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEE-E---------------------------
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE-cCCccccCCCcceEEE-E---------------------------
Confidence 9998888555555478999999999998877665 221 14455666 3
Q ss_pred cCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC
Q 018858 184 IPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG 262 (349)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (349)
++..+++.. .++.|.++|+.+++. ...+..
T Consensus 140 ---------~~~lyv~~~~~~~~v~viD~~t~~~----------------------------------------~~~i~~ 170 (328)
T 3dsm_A 140 ---------GKYVYVNCWSYQNRILKIDTETDKV----------------------------------------VDELTI 170 (328)
T ss_dssp ---------TTEEEEEECTTCCEEEEEETTTTEE----------------------------------------EEEEEC
T ss_pred ---------CCEEEEEcCCCCCEEEEEECCCCeE----------------------------------------EEEEEc
Confidence 455555544 488999999987532 122221
Q ss_pred CCcceEEEEEeeecCCccEEEEeeCC----------CeEEEEecCCCcceecccccceeeecc-ccccceEEEEeecCCC
Q 018858 263 HTAAASCVAFSMFGERGKYLISGGND----------KLVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKVNWLCTTPTES 331 (349)
Q Consensus 263 h~~~i~~i~~~~~~~~~~~l~s~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 331 (349)
......+.++ ++|++++++..+ +.|.++|..++ ++..... .....+..++++| ++
T Consensus 171 -g~~p~~i~~~---~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------~v~~~~~~~~g~~p~~la~~~-d~ 236 (328)
T 3dsm_A 171 -GIQPTSLVMD---KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---------TVEKQFKFKLGDWPSEVQLNG-TR 236 (328)
T ss_dssp -SSCBCCCEEC---TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---------EEEEEEECCTTCCCEEEEECT-TS
T ss_pred -CCCccceEEc---CCCCEEEEECCCccCCccccCCceEEEEECCCC---------eEEEEEecCCCCCceeEEEec-CC
Confidence 1234577888 889887777654 78999999886 3332222 1134678999988 67
Q ss_pred CcEEEeeCCCeEEEeeC
Q 018858 332 ENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 332 ~~l~~~~~dg~i~iw~~ 348 (349)
+.|+++.. .|.+||.
T Consensus 237 ~~lyv~~~--~v~~~d~ 251 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPV 251 (328)
T ss_dssp CEEEEESS--SEEEEET
T ss_pred CEEEEEcc--EEEEEEC
Confidence 77877755 8888885
No 200
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=8.6e-13 Score=107.07 Aligned_cols=203 Identities=10% Similarity=-0.035 Sum_probs=135.1
Q ss_pred EEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (349)
+..+..+.....+++|+|+++ .++++..++.|..|+..++ . ..+..+...+.+++++|+++++++...++.|.+
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~---~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L---SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E---EEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e---EEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 344555666788999999998 6777888899999998864 2 233334567899999999998888777789999
Q ss_pred EEcCCceEeceecc---ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE----EcC
Q 018858 130 IDIRQHCLYKSLRA---GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV----AKG 202 (349)
Q Consensus 130 ~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~ 202 (349)
||..+++....... .....+..++++| +|+++++ |+.
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~------------------------------------~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAP------------------------------------DGSLWFSDPTYGID 138 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECT------------------------------------TSCEEEEECSHHHH
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECC------------------------------------CCCEEEECCccccc
Confidence 99977765433220 1122456677877 7887776 331
Q ss_pred -------------CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEE
Q 018858 203 -------------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC 269 (349)
Q Consensus 203 -------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 269 (349)
.+.|..++.. + . ...+..+....+.
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g----------------------------------------~-~~~~~~~~~~~~g 176 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD-G----------------------------------------T-LSAPIRDRVKPNG 176 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT-S----------------------------------------C-EEEEECCCSSEEE
T ss_pred cccccccccccCCCcEEEEECCC-C----------------------------------------C-EEEeecCCCCCcc
Confidence 2344444433 1 1 1122234456788
Q ss_pred EEEeeecCCccEEEEeeCCCeEEEEecC-CCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 270 VAFSMFGERGKYLISGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 270 i~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++|+ |+++++++.+.++.|++|++. .+.... . ...+..+...+..+++.+ +|+++++. ++.|.+|+.
T Consensus 177 i~~s---~dg~~lv~~~~~~~i~~~~~~~~g~~~~-----~-~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 177 LAFL---PSGNLLVSDTGDNATHRYCLNARGETEY-----Q-GVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp EEEC---TTSCEEEEETTTTEEEEEEECSSSCEEE-----E-EEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECT
T ss_pred EEEC---CCCCEEEEeCCCCeEEEEEECCCCcCcC-----C-CeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECC
Confidence 9999 899988777888999999997 331100 0 111123455677889977 77655444 888999985
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=5.9e-13 Score=106.46 Aligned_cols=168 Identities=11% Similarity=0.014 Sum_probs=128.9
Q ss_pred cCCCCeeeeCCc-eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCC-CCeEEEEEecCCCEEEEEeC-CC
Q 018858 4 AEAKPRRLRGHK-ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIYVSS-GK 80 (349)
Q Consensus 4 ~~~~~~~l~~h~-~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-dg 80 (349)
+++.+.++..+. ..+.++.++|+ ++++++ .++.|..||. +++.+..+..+. ..+.++.+.++|+.+++.+. ++
T Consensus 24 tG~~~w~~~~~~~~~~~~~~~~pd-G~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~ 99 (276)
T 3no2_A 24 TKEIVWEYPLEKGWECNSVAATKA-GEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPS 99 (276)
T ss_dssp TTEEEEEEECCTTCCCCEEEECTT-SCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred CCeEEEEeCCCccCCCcCeEECCC-CCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCC
Confidence 677888888776 57889999998 788884 3678999998 899999888753 57888999999999999887 77
Q ss_pred eEEEEEccCCCcccceeec---cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 81 EVKSFDVHMPASWRPLESY---NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
.|..+|. +++....+..- ..+......++..++++++++...++.|..||.+ ++.+.++. .. ....++.+.+
T Consensus 100 ~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~-~~-~~~~~~~~~~- 174 (276)
T 3no2_A 100 TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVK-LS-GTPFSSAFLD- 174 (276)
T ss_dssp EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE-CS-SCCCEEEECT-
T ss_pred EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEE-CC-CCccceeEcC-
Confidence 7877775 44433333211 1112234556788999999999999999999988 99888887 33 4455666666
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
++++++++..+++|..+|..+++
T Consensus 175 -----------------------------------~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 175 -----------------------------------NGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp -----------------------------------TSCEEEECBTTSEEEEECTTTCC
T ss_pred -----------------------------------CCCEEEEeCCCCeEEEEeCcCCc
Confidence 78899888888899999998764
No 202
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=3.7e-13 Score=122.62 Aligned_cols=231 Identities=6% Similarity=-0.024 Sum_probs=143.3
Q ss_pred cCCCceEEEeC-CCC----cEEEEECCCCcEEEEee------cCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEEcc
Q 018858 25 RDRPGFVASSG-EDG----CICWFDLRSKDVQLVTD------VGNGPVTSLCFKSGNEDIIYVSSGK-----EVKSFDVH 88 (349)
Q Consensus 25 ~~~~~~l~t~~-~dg----~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~ 88 (349)
|+ |++++... ..+ .|.+.+...++....+. +|...+..++|||+|++|+.++.++ .|++||+.
T Consensus 81 ~d-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KK-GKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EE-TTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EE-CCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 77 55555332 222 34444544444332222 2334578899999999998876533 89999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCc----------------EEEEEcCCceE----eceeccccccc
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD----------------VKIIDIRQHCL----YKSLRAGHSSI 148 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~----~~~~~~~~~~~ 148 (349)
+++.... ... ...+..++|+||++.|+.++.++. |++|++.+++. +.... .+...
T Consensus 160 tg~~~~~--~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~-~~~~~ 234 (710)
T 2xdw_A 160 GAKELPD--VLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP-DEPKW 234 (710)
T ss_dssp TTEEEEE--EEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT-TCTTC
T ss_pred CCCCCcc--ccc--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC-CCCeE
Confidence 8754322 111 123677999999999998887765 99999987652 22222 23445
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC-----CCeEEEEEccC------ceee
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-----DGVVDVINIES------ELNI 217 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~~~ 217 (349)
+..+.|+| ++++|+..+. +..|.+||+.+ +.
T Consensus 235 ~~~~~~Sp------------------------------------Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-- 276 (710)
T 2xdw_A 235 MGGAELSD------------------------------------DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI-- 276 (710)
T ss_dssp EEEEEECT------------------------------------TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS--
T ss_pred EEEEEEcC------------------------------------CCCEEEEEEEccCCCccEEEEEECcccccccCCc--
Confidence 67888998 7888877654 56899999875 20
Q ss_pred eecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC----CCeEEE
Q 018858 218 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN----DKLVKV 293 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~----d~~i~v 293 (349)
.....+..+...+.. .|+ ++|+.|+..+. .+.|++
T Consensus 277 -------------------------------------~~~~~l~~~~~~~~~-~~s---~dg~~l~~~s~~~~~~~~l~~ 315 (710)
T 2xdw_A 277 -------------------------------------LKWVKLIDNFEGEYD-YVT---NEGTVFTFKTNRHSPNYRLIN 315 (710)
T ss_dssp -------------------------------------CCCEEEECSSSSCEE-EEE---EETTEEEEEECTTCTTCEEEE
T ss_pred -------------------------------------cceEEeeCCCCcEEE-EEe---ccCCEEEEEECCCCCCCEEEE
Confidence 012233344444443 367 67777665554 246999
Q ss_pred EecCCCcceecccccceeeecccccc--ceEEEEeecCCCCcEEEeeCCCeE--EEeeC
Q 018858 294 WDCSRFQGVQTSINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDTSKVV--KVYSI 348 (349)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i--~iw~~ 348 (349)
||+.++.. .....+..|.. .+..++|++ ++.++++...|+.. ++|++
T Consensus 316 ~d~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 316 IDFTDPEE-------SKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp EETTSCCG-------GGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEET
T ss_pred EeCCCCCc-------ccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEEC
Confidence 99987521 01223334433 677888875 66677888888854 44554
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=5.7e-13 Score=106.56 Aligned_cols=199 Identities=6% Similarity=-0.052 Sum_probs=140.7
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
..+.+++++++ ++++++.. ++.|.+||................+..++++++++.+++...++.|.+|+..+... .
T Consensus 67 ~~p~~i~~~~~-g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~ 142 (270)
T 1rwi_B 67 YQPQGLAVDGA-GTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--T 142 (270)
T ss_dssp CSCCCEEECTT-CCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--E
T ss_pred CCcceeEECCC-CCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--E
Confidence 46788999998 67666666 88999999876554322222335789999999998777777788999997554321 1
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYN 175 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
.. .......+..++++++++.+++...++.|.+||........... .....+.++++.+
T Consensus 143 ~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~d~------------------- 201 (270)
T 1rwi_B 143 VL-PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-TDITAPWGIAVDE------------------- 201 (270)
T ss_dssp EC-CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-SSCCSEEEEEECT-------------------
T ss_pred ee-ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc-cCCCCceEEEECC-------------------
Confidence 11 11122457889999999877777778899999988665443322 2335677888887
Q ss_pred CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeee
Q 018858 176 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 255 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
++.++++...++.|.+|+.....
T Consensus 202 -----------------~g~l~v~~~~~~~v~~~~~~~~~---------------------------------------- 224 (270)
T 1rwi_B 202 -----------------AGTVYVTEHNTNQVVKLLAGSTT---------------------------------------- 224 (270)
T ss_dssp -----------------TCCEEEEETTTSCEEEECTTCSC----------------------------------------
T ss_pred -----------------CCCEEEEECCCCcEEEEcCCCCc----------------------------------------
Confidence 77777777778899999987531
Q ss_pred eeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 256 ~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.......+...+.+++++ ++|+++++...++.|+++++...
T Consensus 225 ~~~~~~~~~~~p~~i~~~---~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 225 STVLPFTGLNTPLAVAVD---SDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CEECCCCSCSCEEEEEEC---TTCCEEEEEGGGTEEEEECCCGG
T ss_pred ceeeccCCCCCceeEEEC---CCCCEEEEECCCCEEEEEcCCCc
Confidence 001111223567899999 89998888889999999998875
No 204
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.59 E-value=1.2e-11 Score=101.67 Aligned_cols=229 Identities=10% Similarity=-0.005 Sum_probs=146.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
-..+..|+|+++.++++...++.|..||..+++.. .+. ....+.+++++++++++++. .+ .|.+||.++++. ..+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~-~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL-TLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE-EEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE-EEE
Confidence 35678899975667777777899999999877643 333 34679999999999876654 44 499999877643 222
Q ss_pred eecc--CcccceEEEEEccCCCEEEEEcC------CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 97 ESYN--YNKEEINQIVCNPKSSFLACADD------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 97 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
.... .....+..++++|+++++++... .+.|..++ +++.. .+. ........++|+|
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~-~~~~~~~~i~~s~------------ 188 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLF-ADISIPNSICFSP------------ 188 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEE-EEESSEEEEEECT------------
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-Eee-CCCcccCCeEEcC------------
Confidence 2211 11245889999999987665432 24566666 45433 222 2233456788888
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEE-EEcCCCeEEEEEcc--Cc-eeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIE--SE-LNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
+++.++ +.+.++.|.+||+. ++ ..
T Consensus 189 ------------------------dg~~lyv~~~~~~~I~~~d~~~~~Gl~~---------------------------- 216 (326)
T 2ghs_A 189 ------------------------DGTTGYFVDTKVNRLMRVPLDARTGLPT---------------------------- 216 (326)
T ss_dssp ------------------------TSCEEEEEETTTCEEEEEEBCTTTCCBS----------------------------
T ss_pred ------------------------CCCEEEEEECCCCEEEEEEcccccCCcc----------------------------
Confidence 677554 44567899999986 32 10
Q ss_pred eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEE
Q 018858 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 324 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 324 (349)
........+......+..+.++ ++|++.++...++.|.+||.. + ..+..+..+...++++
T Consensus 217 -------~~~~~~~~~~~~~~~p~gi~~d---~~G~lwva~~~~~~v~~~d~~-g---------~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 217 -------GKAEVFIDSTGIKGGMDGSVCD---AEGHIWNARWGEGAVDRYDTD-G---------NHIARYEVPGKQTTCP 276 (326)
T ss_dssp -------SCCEEEEECTTSSSEEEEEEEC---TTSCEEEEEETTTEEEEECTT-C---------CEEEEEECSCSBEEEE
T ss_pred -------cCceEEEECCCCCCCCCeeEEC---CCCCEEEEEeCCCEEEEECCC-C---------CEEEEEECCCCCcEEE
Confidence 0001112222334456788888 889887777667899999984 3 3344444455678999
Q ss_pred EeecCCCCcEEEee
Q 018858 325 CTTPTESENLVVCD 338 (349)
Q Consensus 325 ~~~~~~~~~l~~~~ 338 (349)
+|..++++.|++++
T Consensus 277 af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 277 AFIGPDASRLLVTS 290 (326)
T ss_dssp EEESTTSCEEEEEE
T ss_pred EEecCCCCEEEEEe
Confidence 99733666565543
No 205
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.58 E-value=7.4e-13 Score=120.06 Aligned_cols=242 Identities=13% Similarity=0.050 Sum_probs=146.5
Q ss_pred CCceeeeEEEEecCCCceEE-----EeCCCCcEEEEECCCCcEEEE-eecCCCCeEEEEEecCCCEEEEEeCCC------
Q 018858 13 GHKATATCCIASRDRPGFVA-----SSGEDGCICWFDLRSKDVQLV-TDVGNGPVTSLCFKSGNEDIIYVSSGK------ 80 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~-----t~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg------ 80 (349)
+|...+..++|||+ +++|+ .|+....|++||+.+++.+.. +... ....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 126 DGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccc
Confidence 35567889999999 78777 344446899999999986543 2211 12467899 999999988773
Q ss_pred -------eEEEEEccCCCcc-cceeeccC-cccceEEEEEccCCCEEEEEcC----CCcEEEEEcCCce-Eeceeccccc
Q 018858 81 -------EVKSFDVHMPASW-RPLESYNY-NKEEINQIVCNPKSSFLACADD----GGDVKIIDIRQHC-LYKSLRAGHS 146 (349)
Q Consensus 81 -------~i~iwd~~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~ 146 (349)
.|++|++.++... ..+..... +......+.|+|++++|+.... ...|+++|+.++. ....+. .+.
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~~~ 280 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ-GDL 280 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-CSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-CCC
Confidence 4999998875321 22333332 3345678999999998865432 3479999997653 233444 343
Q ss_pred cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC---CeEEEEEccCceeeeecCCC
Q 018858 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKST 223 (349)
Q Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~ 223 (349)
...... ++++ .+.+++....+ +.|..+|+.++..
T Consensus 281 ~~~~~~-~~~~-----------------------------------g~~l~~~t~~~~~~~~l~~~d~~~~~~------- 317 (693)
T 3iuj_A 281 DADVSL-VDNK-----------------------------------GSTLYLLTNRDAPNRRLVTVDAANPGP------- 317 (693)
T ss_dssp SSCEEE-EEEE-----------------------------------TTEEEEEECTTCTTCEEEEEETTSCCG-------
T ss_pred CceEEE-Eecc-----------------------------------CCEEEEEECCCCCCCEEEEEeCCCCCc-------
Confidence 333333 4451 23444444433 5788888876310
Q ss_pred CCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC-CC--eEEEEecCCCc
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--LVKVWDCSRFQ 300 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~ 300 (349)
.....+..|...+. .|+ +++++|+.... ++ .|++||+...
T Consensus 318 -------------------------------~~~~~l~~~~~~~~--~~s---~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 318 -------------------------------AHWRDLIPERQQVL--TVH---SGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp -------------------------------GGCEEEECCCSSCE--EEE---EETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred -------------------------------cccEEEecCCCCEE--EEE---EECCEEEEEEEECCeeEEEEEECCCC-
Confidence 00122334444443 777 67777766654 44 6899998854
Q ss_pred ceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC----CeEEEeeC
Q 018858 301 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS----KVVKVYSI 348 (349)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iw~~ 348 (349)
............+..+.+++ +++.|+....+ +.++.||+
T Consensus 361 --------~~~~l~~p~~~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 361 --------RVREVALPGLGSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp --------EEEEECCSSSSEEEECCCCT-TCSCEEEEEECSSSCCEEEEECT
T ss_pred --------eeEEeecCCCceEEeeecCC-CCCEEEEEecCCCCCCEEEEEEC
Confidence 22222223344566666766 55555544333 78888876
No 206
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=5.5e-11 Score=96.33 Aligned_cols=237 Identities=4% Similarity=-0.073 Sum_probs=153.8
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc
Q 018858 56 VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH 135 (349)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 135 (349)
.+...+.++++.++|+..++...++.|.+||.. ++ ...+. .......+..+++.+++..+++...++.|..||.. +
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYP-LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEec-CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 345678999999999877766667899999987 43 22221 12234678899999999888887778889999976 3
Q ss_pred eEeceecc-ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 136 CLYKSLRA-GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 136 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
+. ..+.. .....+.++++.| +++++++...++.|..||. ++
T Consensus 88 ~~-~~~~~~~~~~~~~~i~~~~------------------------------------~g~l~v~~~~~~~i~~~d~-~g 129 (299)
T 2z2n_A 88 II-KEYTLPNPDSAPYGITEGP------------------------------------NGDIWFTEMNGNRIGRITD-DG 129 (299)
T ss_dssp CE-EEEECSSTTCCEEEEEECT------------------------------------TSCEEEEETTTTEEEEECT-TC
T ss_pred cE-EEEeCCCcCCCceeeEECC------------------------------------CCCEEEEecCCceEEEECC-CC
Confidence 32 22220 2344677788877 7888887777889999998 44
Q ss_pred eeeeecCCCCCCccceeeeeccccEEEEee---eeeecCceeeeee-eeecCCCcceEEEEEeeecCCccEEEEeeCCCe
Q 018858 215 LNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLD-YSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~ 290 (349)
+...............+++.++|..+++.. ....... ..... ..+..+...+..++++ +++++.++...++.
T Consensus 130 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~---~~g~l~v~~~~~~~ 205 (299)
T 2z2n_A 130 KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG---NDDALWFVEIIGNK 205 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC---TTSSEEEEETTTTE
T ss_pred CEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC---CCCCEEEEccCCce
Confidence 333322222344567889999998776431 1111111 11111 1122334567899999 88888777777889
Q ss_pred EEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 291 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 291 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|.+||. ++.. .......+...+.++++.+ ++++.++...++.|..|+.
T Consensus 206 i~~~~~-~g~~--------~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 206 IGRITT-SGEI--------TEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEECT-TCCE--------EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET
T ss_pred EEEECC-CCcE--------EEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC
Confidence 999998 5421 1111223456788999977 6765555547788888874
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.55 E-value=7.5e-12 Score=105.11 Aligned_cols=266 Identities=11% Similarity=0.027 Sum_probs=163.2
Q ss_pred CceEEEeCC-C----CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe----------CCCeEEEEEccCCCc
Q 018858 28 PGFVASSGE-D----GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSFDVHMPAS 92 (349)
Q Consensus 28 ~~~l~t~~~-d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~ 92 (349)
++.++.... + +.|.+.|..+++.+..+.....+ .++++|++++++++. .++.|.++|..+.+.
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 455554433 2 69999999999999999876666 899999999998876 367899999998765
Q ss_pred ccceeec-cC---cccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 93 WRPLESY-NY---NKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 93 ~~~~~~~-~~---~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
...+..- .. .......++++|++++++++.. ++.|.+.|+.+++.+..+. ... +....|+
T Consensus 162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~-v~g----~~~~~p~--------- 227 (426)
T 3c75_H 162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD-VPD----CYHIFPA--------- 227 (426)
T ss_dssp EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCS----EEEEEEE---------
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE-cCC----ceeeccC---------
Confidence 4444321 00 0123557899999999988764 5789999999999988877 221 1223331
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee----cCCCCCCccceeeeeccccEEEE
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR----SKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
....+++.+.||.+.+.++.+++.... +..........+.+.+++..++.
T Consensus 228 --------------------------g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 228 --------------------------SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp --------------------------ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred --------------------------CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 224555566677777777754433211 11111111223456777666543
Q ss_pred eeeee-ecCce----eeeeeeeec-------C---CCcceEEEEEeeecCCccEEEEeeC----------CCeEEEEecC
Q 018858 243 MEILD-QSGGK----RLHLDYSVG-------G---HTAAASCVAFSMFGERGKYLISGGN----------DKLVKVWDCS 297 (349)
Q Consensus 243 ~~~~~-~~~~~----~~~~~~~~~-------~---h~~~i~~i~~~~~~~~~~~l~s~~~----------d~~i~vwd~~ 297 (349)
..... ..... .......+. . .......+.++ ++++.++.... ++.|.+.|..
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s---~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH---RQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE---GGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc---CCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 22100 00000 000111100 0 01111236788 78877666532 3579999999
Q ss_pred CCcceecccccceeeeccccccceEEEEeecCCCC-cEEEee-CCCeEEEeeCC
Q 018858 298 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD-TSKVVKVYSIS 349 (349)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~iw~~~ 349 (349)
+.+ .+..+. -......++++| |++ +++++. .++.|.++|+.
T Consensus 359 T~k---------vv~~I~-vg~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 359 TGE---------RINKIE-LGHEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp TCC---------EEEEEE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEETT
T ss_pred CCe---------EEEEEE-CCCCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECC
Confidence 984 433332 223588899988 787 788887 69999999963
No 208
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.55 E-value=1.8e-13 Score=113.37 Aligned_cols=170 Identities=11% Similarity=0.047 Sum_probs=122.2
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-----------EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----------VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
++..+++++. ..++++|+.+ .+++|++++.+ ...... +.. |+.++| +++.|+++ .++.|++|
T Consensus 39 ~~nlLais~~-~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCC-CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 6899999998 7788888887 46669865332 112233 556 999999 88999998 78999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|+.+......... +...+.++.+.+. .+++++.||.|.+||++++.... +...|++++|+|
T Consensus 112 dv~sl~~~~~~~~---~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSp--------- 172 (388)
T 1xip_A 112 DLEELSEFRTVTS---FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTN--------- 172 (388)
T ss_dssp ESSSTTCEEEEEE---CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECS---------
T ss_pred EchhhhccCccce---eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcC---------
Confidence 9987543333333 3456777776654 38888999999999999776532 335799999999
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee--eeecCC--------CCCCccceeeeec
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN--ISRSKS--------TTKPLKGSQSTSK 235 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~--------~~~~~~~~~~~~~ 235 (349)
+| ++.|..||.+++|+....+. ...... .....+.++.|.+
T Consensus 173 ---------------------------kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 173 ---------------------------SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp ---------------------------SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred ---------------------------Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence 67 67889999999999887653 222211 1234566677777
Q ss_pred cccEEE
Q 018858 236 VNIRDA 241 (349)
Q Consensus 236 ~~~~~~ 241 (349)
++.+++
T Consensus 224 ~~~flv 229 (388)
T 1xip_A 224 PQDFLA 229 (388)
T ss_dssp SSEEEE
T ss_pred CCeEEE
Confidence 777666
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=3.2e-11 Score=100.65 Aligned_cols=246 Identities=9% Similarity=-0.043 Sum_probs=151.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC----------CCCcEEEEECCCCcEEEEeecC-------CCCeEEEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVG-------NGPVTSLCF 66 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~ 66 (349)
+++.+.++.....+ .++++|+ +++++.+. .++.|.+||..+.+.+..+... ......++|
T Consensus 56 t~~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~ 132 (373)
T 2mad_H 56 SGSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred CCeEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE
Confidence 44555566544444 8999999 78887775 3678999999998887776532 123457999
Q ss_pred ecCCCEEEEEeC--CCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceec-
Q 018858 67 KSGNEDIIYVSS--GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLR- 142 (349)
Q Consensus 67 ~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~- 142 (349)
+|+|++|+++.. ++.|.++| .+++....+ +... .++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus 133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~--i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~ 204 (373)
T 2mad_H 133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL--LSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLV 204 (373)
T ss_pred CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE--cCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEec
Confidence 999999998874 47899999 876543220 2211 124455655 45667778999999999 776653221
Q ss_pred ----cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee-
Q 018858 143 ----AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI- 217 (349)
Q Consensus 143 ----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~- 217 (349)
...........+.+ ++..++..+..+.+.+.|+......
T Consensus 205 ~~~~~~~~p~~~~~~~~~------------------------------------~~~~~~~~~~~~~v~vid~~~~~~~v 248 (373)
T 2mad_H 205 GAMLTAAQNLLTQPAQAN------------------------------------KSGRIVWPVYSGKILQADISAAGATN 248 (373)
T ss_pred cccccCCcceeecceeEe------------------------------------cCCEEEEEcCCceEEEEeccCCcceE
Confidence 01110111233444 3333333346788999998754221
Q ss_pred -eecCC---------CCCCccceeeeeccccEEEEeeee-----------eec--CceeeeeeeeecCCCcceEEEEEee
Q 018858 218 -SRSKS---------TTKPLKGSQSTSKVNIRDAEMEIL-----------DQS--GGKRLHLDYSVGGHTAAASCVAFSM 274 (349)
Q Consensus 218 -~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~~~~h~~~i~~i~~~~ 274 (349)
..... ........++++++++.+.+.... ... .....+.+..+.. ......++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s- 326 (373)
T 2mad_H 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVA- 326 (373)
T ss_pred eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEEC-
Confidence 11100 011223347889998887753321 111 1122344444432 2357899999
Q ss_pred ecCCcc-EEEEee-CCCeEEEEecCCCc
Q 018858 275 FGERGK-YLISGG-NDKLVKVWDCSRFQ 300 (349)
Q Consensus 275 ~~~~~~-~l~s~~-~d~~i~vwd~~~~~ 300 (349)
|||+ +++++. .++.|.+||..+++
T Consensus 327 --~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 327 --QDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred --CCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 8999 777776 58999999999984
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.53 E-value=2.6e-13 Score=112.41 Aligned_cols=184 Identities=5% Similarity=-0.012 Sum_probs=127.1
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc--------ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS--------WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
.++..+++++....+++|+.++ +.+|+++.... ........ ... |+.++| ++++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 3688999999999999999875 66698764220 11111112 335 999999 88999998 88999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
|+++........ .+...+.++.+.+ . .+++++.||.|.+||
T Consensus 112 dv~sl~~~~~~~-~~~~~v~~i~~~~------------------------------------p--~~av~~~dG~L~v~d 152 (388)
T 1xip_A 112 DLEELSEFRTVT-SFEKPVFQLKNVN------------------------------------N--TLVILNSVNDLSALD 152 (388)
T ss_dssp ESSSTTCEEEEE-ECSSCEEEEEECS------------------------------------S--EEEEEETTSEEEEEE
T ss_pred EchhhhccCccc-eeecceeeEEecC------------------------------------C--CEEEEECCCCEEEEE
Confidence 998665444444 5566677776655 2 288889999999999
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCe
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~ 290 (349)
+..+. .. . +...|++++|+ |+| ++.|..||.
T Consensus 153 l~~~~----------------------------------------~~-~---~~~~Vs~v~WS---pkG--~~vg~~dg~ 183 (388)
T 1xip_A 153 LRTKS----------------------------------------TK-Q---LAQNVTSFDVT---NSQ--LAVLLKDRS 183 (388)
T ss_dssp TTTCC----------------------------------------EE-E---EEESEEEEEEC---SSE--EEEEETTSC
T ss_pred ccCCc----------------------------------------cc-c---ccCCceEEEEc---CCc--eEEEEcCCc
Confidence 98641 11 1 34579999999 888 677889999
Q ss_pred EEEEecCCCcc--eecccccceeeeccccccceEEEEeecCCCCcEEEe
Q 018858 291 VKVWDCSRFQG--VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 291 i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
+++|+...... .........+....+|...|.++.|.+ ++.++++-
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y 231 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF 231 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEE
Confidence 99998887632 110000000001124778999999987 66666664
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=5.4e-12 Score=115.46 Aligned_cols=197 Identities=8% Similarity=-0.056 Sum_probs=123.8
Q ss_pred CCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCc-------
Q 018858 59 GPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD------- 126 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 126 (349)
..+..++|||||++|+.++.+ ..|++||+.+++.... .. +...+..++|+|| +.|+.+..++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--EE--EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--cC--CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 367889999999999887643 3699999998754321 11 1122357899999 98888776554
Q ss_pred -------EEEEEcCCce----EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc
Q 018858 127 -------VKIIDIRQHC----LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 195 (349)
Q Consensus 127 -------i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
|++|++.++. .+.... .+...+..+.|+| +|+
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~-~~~~~~~~~~~Sp------------------------------------DG~ 280 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATP-ELPKRGHGASVSS------------------------------------DGR 280 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCT-TCTTCEEEEEECT------------------------------------TSC
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccC-CCCeEEEEEEECC------------------------------------CCC
Confidence 8899987654 222222 2223477888888 788
Q ss_pred EEEEEcCC-----CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEE
Q 018858 196 ICVVAKGD-----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV 270 (349)
Q Consensus 196 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i 270 (349)
+|+..+.+ ..|.+||+.++.. .....+..+...+...
T Consensus 281 ~l~~~~~~~~~~~~~l~~~d~~~~~~--------------------------------------~~~~~l~~~~~~~~~~ 322 (741)
T 1yr2_A 281 WVVITSSEGTDPVNTVHVARVTNGKI--------------------------------------GPVTALIPDLKAQWDF 322 (741)
T ss_dssp EEEEEEECTTCSCCEEEEEEEETTEE--------------------------------------CCCEEEECSSSSCEEE
T ss_pred EEEEEEEccCCCcceEEEEECCCCCC--------------------------------------cccEEecCCCCceEEE
Confidence 88776644 3899999876310 0012233333333333
Q ss_pred EEeeecCCccEEEEeeC----CCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 271 AFSMFGERGKYLISGGN----DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 271 ~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
++ |+|+.|+..+. ++.|++||+.+.. . ........+...+..++++ ++.++++...|+..+||
T Consensus 323 -~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~------~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 323 -VD---GVGDQLWFVSGDGAPLKKIVRVDLSGST-P------RFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp -EE---EETTEEEEEECTTCTTCEEEEEECSSSS-C------EEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEE
T ss_pred -Ee---ccCCEEEEEECCCCCCCEEEEEeCCCCc-c------ccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEE
Confidence 34 57777776664 3559999987741 0 1222233344456667775 45577778888888877
Q ss_pred eC
Q 018858 347 SI 348 (349)
Q Consensus 347 ~~ 348 (349)
.+
T Consensus 390 ~~ 391 (741)
T 1yr2_A 390 AF 391 (741)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=3.3e-11 Score=99.45 Aligned_cols=248 Identities=10% Similarity=-0.007 Sum_probs=152.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC----------CCCcEEEEECCCCcEEEEeecCC-------CCeEEEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVGN-------GPVTSLCF 66 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~ 66 (349)
+++.+.++..-..+ . ++++|+ +++++.+. .++.|.+||..+++.+.++.... .....+++
T Consensus 68 t~~v~~~I~vG~~P-~-va~spD-G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~ 144 (386)
T 3sjl_D 68 AGRVIGMIDGGFLP-N-PVVADD-GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 144 (386)
T ss_dssp TTEEEEEEEECSSC-E-EEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred CCeEEEEEECCCCC-c-EEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence 45556666654455 3 999999 77777664 35789999999999988876432 24567999
Q ss_pred ecCCCEEEEEeC--CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEeceecc
Q 018858 67 KSGNEDIIYVSS--GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRA 143 (349)
Q Consensus 67 ~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~ 143 (349)
+|+|++++++.. ++.|.++|+.+++....+.. . + . ...+....+.+++.+.||.+.+.++.+ ++.......
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-~---g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~ 218 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-P---D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 218 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-C---S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-C---C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecc
Confidence 999999998874 68999999998754444322 1 1 1 122322346677778889988888875 554221110
Q ss_pred ---cccccee-EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee-
Q 018858 144 ---GHSSICS-SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS- 218 (349)
Q Consensus 144 ---~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~- 218 (349)
....++. ...|.+ ++|++++ .+.+|.|.+.|+.+.....
T Consensus 219 ~~~~~~~~~~~~~~~~~-----------------------------------~dG~~~~-vs~~g~V~v~d~~~~~~~v~ 262 (386)
T 3sjl_D 219 VFHPEDEFLINHPAYSQ-----------------------------------KAGRLVW-PTYTGKIHQIDLSSGDAKFL 262 (386)
T ss_dssp CCSCTTSCBCSCCEEET-----------------------------------TTTEEEE-EBTTSEEEEEECTTSSCEEC
T ss_pred eeccccccccccceeEc-----------------------------------CCCcEEE-EeCCCEEEEEECCCCcceee
Confidence 0001111 123321 1666555 4558999999997653211
Q ss_pred -ec---------CCCCCCccceeeeeccccEEEEeeeee-----------ec--CceeeeeeeeecCCCcceEEEEEeee
Q 018858 219 -RS---------KSTTKPLKGSQSTSKVNIRDAEMEILD-----------QS--GGKRLHLDYSVGGHTAAASCVAFSMF 275 (349)
Q Consensus 219 -~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~h~~~i~~i~~~~~ 275 (349)
.. ..........++++++++.+.+....+ .. .....+.+..+.- ...+..|.++
T Consensus 263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs-- 339 (386)
T 3sjl_D 263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVS-- 339 (386)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEEC--
T ss_pred cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEEC--
Confidence 11 111223445688899998887643211 00 1112223333321 2367899999
Q ss_pred cCCcc-EEEEe-eCCCeEEEEecCCCc
Q 018858 276 GERGK-YLISG-GNDKLVKVWDCSRFQ 300 (349)
Q Consensus 276 ~~~~~-~l~s~-~~d~~i~vwd~~~~~ 300 (349)
+|++ +|++. ..++.|.++|..+++
T Consensus 340 -~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 340 -QDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp -SSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred -CCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 8986 66654 568999999999984
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.47 E-value=5.7e-12 Score=104.38 Aligned_cols=276 Identities=8% Similarity=0.001 Sum_probs=147.2
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeC--CCCcEEEEECCCCcEEEEee-------cCCCCeEEEEEecCCCEEEEEe
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSG--EDGCICWFDLRSKDVQLVTD-------VGNGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~--~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~ 77 (349)
.++.+.........++++|+ ++++++.. .++.++||.+.+++. ..+. .+-..+..++++++++++++-.
T Consensus 8 ~~~~v~~~~~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~ 85 (343)
T 2qe8_A 8 RLEVVAELSLAPGNITLTPD-GRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN 85 (343)
T ss_dssp CCEEEEEESSCEEEEEECTT-SCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred eeEEEEEcCCCcceEEECCC-CCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence 34444333367889999998 78888853 234355565545543 3222 2446789999999987655543
Q ss_pred C-----CCeEEEEEccCCCcccceeec---cCcccceEEEEEccCCCEE-EEEc---CCCcEEEEEcCCceEeceecccc
Q 018858 78 S-----GKEVKSFDVHMPASWRPLESY---NYNKEEINQIVCNPKSSFL-ACAD---DGGDVKIIDIRQHCLYKSLRAGH 145 (349)
Q Consensus 78 ~-----dg~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l-~~~~---~dg~i~i~d~~~~~~~~~~~~~~ 145 (349)
. ++.|.+||+.+++....+..- ..+...+..+++++++..+ ++.. .++.|.+||+.+++..+.+. .|
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~ 164 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GY 164 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TC
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CC
Confidence 3 578999999876533333211 1122356889999865444 5544 57889999999887766554 32
Q ss_pred cccee-EEEEccCCCCCCCCCCCCCCccc-cCCceeEEeecCcccccCCCCcEEEEEcCCC-eEEEEEccCceeeeecCC
Q 018858 146 SSICS-SVQFIPWKPWEGLPENNGNAGQC-YNPAFVHAIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKS 222 (349)
Q Consensus 146 ~~~v~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~ 222 (349)
..... ...+.+++......+ ..+.. .-......++++| +++.|+++...+ .+..++.....
T Consensus 165 ~~~~~~~~~~~~~g~~~~~~~---~~g~~~~~~~~~~gia~s~------dg~~ly~~~~~~~~l~~~~~~~~~------- 228 (343)
T 2qe8_A 165 PGIAPEDIDLVIDGVPVQIGQ---PDGTVIRPHLGVNGIVLDA------ENEWLYLSPMHSTSMYRIKSADLS------- 228 (343)
T ss_dssp TTTSCCSCCCEETTEECBEEC---TTSCEECCCCCEEEEEECT------TSCEEEEEESSCSEEEEEEHHHHT-------
T ss_pred CcccccccceeECCEEEEecc---CCCceeceecccceeEecc------CCCEEEEEeCCCCeEEEEEHHHhc-------
Confidence 21100 022222111000000 00000 0011234555555 555555554433 33333221000
Q ss_pred CCCCccceeeeeccccEEEEeeeeeecCceeeeeee--eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 223 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY--SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+.... ..+... ...++.+....++++ ++|+++++...++.|.+||..++
T Consensus 229 ------------------------~~~~~-~~~~~~~~~~~g~~g~pdgia~d---~~G~l~va~~~~~~V~~~d~~~G- 279 (343)
T 2qe8_A 229 ------------------------NLQLT-DAELGSKIERYSEKPICDGISID---KDHNIYVGDLAHSAIGVITSADR- 279 (343)
T ss_dssp ------------------------CTTCC-HHHHHTTCEEEEECCSCSCEEEC---TTCCEEEEEGGGTEEEEEETTTT-
T ss_pred ------------------------CCCCC-hhhhhcceEecccCCCCceEEEC---CCCCEEEEccCCCeEEEEECCCC-
Confidence 00000 000000 111233456678899 89999999989999999998444
Q ss_pred ceecccccceeeecc-ccccceEEEEeecCCCCcEEEeeC
Q 018858 301 GVQTSINNDLLIKNI-NLNKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 301 ~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
....... .+...+.++++.+ +++++++.+.
T Consensus 280 --------~~~~~~~~~~~~~p~~va~~~-~g~l~v~~~~ 310 (343)
T 2qe8_A 280 --------AYKLLVTDEKLSWTDSFNFGS-DGYLYFDCNQ 310 (343)
T ss_dssp --------EEEEEEECGGGSCEEEEEECT-TSCEEEEECC
T ss_pred --------CEEEEEECCceecCCeeEECC-CCcEEEEeCc
Confidence 2211111 1244688999987 6776666653
No 214
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.47 E-value=6.7e-10 Score=89.94 Aligned_cols=236 Identities=6% Similarity=-0.055 Sum_probs=152.2
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
....+.++++.++++..++...++.|.+||.. ++. ..+ ........+..+++.+++..+++...++.|..||.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-KEF-EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-EEE-ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 45678899999999877777678999999977 432 222 122233568899999999888877777889999987 54
Q ss_pred Eeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 137 LYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 137 ~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
.. .+. ......+.++++.+ +++++++...++.|..+|.. ++
T Consensus 94 ~~-~~~~~~~~~~~~~i~~~~------------------------------------~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 94 FT-EYPLPQPDSGPYGITEGL------------------------------------NGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp EE-EEECSSTTCCEEEEEECS------------------------------------TTCEEEEETTTTEEEEECTT-SC
T ss_pred eE-EecCCCCCCCCccceECC------------------------------------CCCEEEEccCCCeEEEECCC-CC
Confidence 42 222 02335677788877 78877777778899999987 44
Q ss_pred eeeecCCCCCCccceeeeeccccEEEEeee---eeecC-ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeE
Q 018858 216 NISRSKSTTKPLKGSQSTSKVNIRDAEMEI---LDQSG-GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291 (349)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i 291 (349)
...............+++.++|+..++... ..... ...... .....+...+..++++ +++++.++....+.|
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~~i~~d---~~g~l~v~~~~~~~i 211 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEE-YPLPTNAAAPVGITSG---NDGALWFVEIMGNKI 211 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEE-EECSSTTCCEEEEEEC---TTSSEEEEETTTTEE
T ss_pred EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEE-eeCCCCCCCcceEEEC---CCCCEEEEccCCCEE
Confidence 332222223345678899999986654211 11111 111111 1222334568899998 888887777777889
Q ss_pred EEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 292 KVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 292 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+||. ++. ............+.++++.+ ++++.++...++.|..|+.
T Consensus 212 ~~~~~-~g~--------~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 212 GRITT-TGE--------ISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEECT-TCC--------EEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT
T ss_pred EEEcC-CCc--------EEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC
Confidence 99998 331 11111223445678899977 6765555556688888874
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.46 E-value=9.2e-11 Score=98.56 Aligned_cols=246 Identities=10% Similarity=-0.002 Sum_probs=153.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC----------CCCcEEEEECCCCcEEEEeecC-------CCCeEEEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVG-------NGPVTSLCF 66 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~ 66 (349)
+++.+.++..-..+ .++++|+ +++|+.+. .++.|.++|..+++.+..+... ......+++
T Consensus 108 t~~vv~~I~vG~~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~ 184 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL 184 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE
T ss_pred CCEEEEEEECCCCC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE
Confidence 45566666644455 7999999 77777665 3678999999999998877642 133567899
Q ss_pred ecCCCEEEEEeC--CCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEec----
Q 018858 67 KSGNEDIIYVSS--GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYK---- 139 (349)
Q Consensus 67 ~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~---- 139 (349)
+|+|++++++.. ++.|.+.|+.+.+....+..- . . ....|++ ..+++.+.||.+.+.++.+++...
T Consensus 185 spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~----g-~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~ 257 (426)
T 3c75_H 185 TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP----D-C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTE 257 (426)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----S-E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECC
T ss_pred cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC----C-c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeee
Confidence 999999999874 578999999986544333321 1 1 2333433 555666677888777875554432
Q ss_pred eeccccccc-eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee
Q 018858 140 SLRAGHSSI-CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218 (349)
Q Consensus 140 ~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 218 (349)
.+. ....+ ...+.|.+ ++..++.....+.+.+.|........
T Consensus 258 ~~~-v~~~p~~~~~~~~~------------------------------------dg~~~~~~s~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 258 VFH-TEDELLINHPAFSL------------------------------------RSGRLVWPTYTGKIFQADLTAEGATF 300 (426)
T ss_dssp CCS-CTTSCBCSCCEECT------------------------------------TTCEEEEEBTTSEEEEEEECSSCEEE
T ss_pred eec-cCCCceeeEeeecC------------------------------------CCCEEEEEeCCCcEEEEeccCCceEE
Confidence 111 11111 11234455 56666666678899999997543221
Q ss_pred ecC----C-------CCCCccceeeeeccccEEEEeeee-----------eec--CceeeeeeeeecCCCcceEEEEEee
Q 018858 219 RSK----S-------TTKPLKGSQSTSKVNIRDAEMEIL-----------DQS--GGKRLHLDYSVGGHTAAASCVAFSM 274 (349)
Q Consensus 219 ~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~~~~h~~~i~~i~~~~ 274 (349)
... . ........++++++++.+.+.... ... .....+.+..+.. ......+.|+
T Consensus 301 ~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~s- 378 (426)
T 3c75_H 301 RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVS- 378 (426)
T ss_dssp CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEEC-
T ss_pred eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEc-
Confidence 110 0 011223347999999887754221 111 1112333334432 1247889999
Q ss_pred ecCCcc-EEEEee-CCCeEEEEecCCCc
Q 018858 275 FGERGK-YLISGG-NDKLVKVWDCSRFQ 300 (349)
Q Consensus 275 ~~~~~~-~l~s~~-~d~~i~vwd~~~~~ 300 (349)
||++ ++++.. .++.|.|+|+.+.+
T Consensus 379 --pDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 379 --QDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp --CSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred --cCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 8998 888877 58999999999983
No 216
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=1.8e-10 Score=94.06 Aligned_cols=199 Identities=12% Similarity=0.118 Sum_probs=129.0
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEE-eec----CCCCeEEEEEecCCCEEEEEeCC---------
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV-TDV----GNGPVTSLCFKSGNEDIIYVSSG--------- 79 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d--------- 79 (349)
+...+.++++++++++++++.. .+.|.+||.+ ++.... ... ....+..++++++|+..++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4466889999987345444444 4479999988 665433 221 12347899999999877766544
Q ss_pred ------CeEEEEEccCCCcccceeeccCcccceEEEEEc----cCCCEEE-EEcCCCcEEEEEcC-CceE-----eceec
Q 018858 80 ------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCN----PKSSFLA-CADDGGDVKIIDIR-QHCL-----YKSLR 142 (349)
Q Consensus 80 ------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~-~~~~dg~i~i~d~~-~~~~-----~~~~~ 142 (349)
+.|..++.. ++. ..+. .+......++++ |+++.++ +...++.|.+||+. +++. ...+.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~-~~~~---~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 221 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQM-IQVD---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP 221 (314)
T ss_dssp TTSSSCEEEEEECTT-SCE-EEEE---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred cccCCCCeEEEECCC-CCE-EEec---cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC
Confidence 466666654 322 1111 122446788999 9986654 44567899999986 4432 22222
Q ss_pred cccc-cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC
Q 018858 143 AGHS-SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 143 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
.+. ..+..+++++ +++++++...++.|.+||.+++
T Consensus 222 -~~~~~~p~~i~~d~------------------------------------~G~l~v~~~~~~~i~~~d~~~g------- 257 (314)
T 1pjx_A 222 -GTHEGGADGMDFDE------------------------------------DNNLLVANWGSSHIEVFGPDGG------- 257 (314)
T ss_dssp -CCSSCEEEEEEEBT------------------------------------TCCEEEEEETTTEEEEECTTCB-------
T ss_pred -CCCCCCCCceEECC------------------------------------CCCEEEEEcCCCEEEEEcCCCC-------
Confidence 222 4566777777 7888887777889999998743
Q ss_pred CCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEE-EEeeCCCeEEEEecCCC
Q 018858 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~ 299 (349)
+....+..+...+.+++++ ++++.| ++...++.|..|++...
T Consensus 258 ---------------------------------~~~~~~~~~~~~~~~i~~~---~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 258 ---------------------------------QPKMRIRCPFEKPSNLHFK---PQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ---------------------------------SCSEEEECSSSCEEEEEEC---TTSSEEEEEETTTTEEEEEECSSC
T ss_pred ---------------------------------cEeEEEeCCCCCceeEEEC---CCCCEEEEEeCCCCeEEEEeCCCC
Confidence 1222233344678999998 899855 45556789999998753
No 217
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.39 E-value=3.3e-10 Score=94.30 Aligned_cols=240 Identities=13% Similarity=0.054 Sum_probs=144.8
Q ss_pred cCCCceEEEeCCCCcEEEEECCCC----cEEEEee-------cCCCCeEEEEEecCCCEEEEEeCC------CeEEEEEc
Q 018858 25 RDRPGFVASSGEDGCICWFDLRSK----DVQLVTD-------VGNGPVTSLCFKSGNEDIIYVSSG------KEVKSFDV 87 (349)
Q Consensus 25 ~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~ 87 (349)
++...+++++-.++.|+++|+.+. +...+++ ........+..+|+| .++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 663344556777899999998754 5556663 112245667888999 66665544 78999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEc-------------------CCCcEEEEEcCCceEeceeccc-ccc
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-------------------DGGDVKIIDIRQHCLYKSLRAG-HSS 147 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~-~~~ 147 (349)
++.+.......-......-..+-|+|+++.+++.. ....|.+||+.+++.+.++..+ ...
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 87654433332111112244678899999888874 3678999999998888887732 223
Q ss_pred ceeEEEE--ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc------CCCeEEEEEccCceeeee
Q 018858 148 ICSSVQF--IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK------GDGVVDVINIESELNISR 219 (349)
Q Consensus 148 ~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~ 219 (349)
....+.| +| +++++.+++ .++.|.+|....+.....
T Consensus 252 ~P~~i~f~~~P------------------------------------dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~ 295 (462)
T 2ece_A 252 MALELRPLHDP------------------------------------TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE 295 (462)
T ss_dssp EEEEEEECSST------------------------------------TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE
T ss_pred ccceeEeeECC------------------------------------CCCEEEEEEeeeccCCCceEEEEEecCCceeEE
Confidence 4455555 77 777777666 456888877654311000
Q ss_pred cCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee-------cCCCcceEEEEEeeecCCccEEEEee-CCCeE
Q 018858 220 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV-------GGHTAAASCVAFSMFGERGKYLISGG-NDKLV 291 (349)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i 291 (349)
.. .+ .........+ .+-......|.++ +||++|+++. ..+.|
T Consensus 296 ~v------------------------Id---i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS---~DGrfLYVSnrg~d~V 345 (462)
T 2ece_A 296 KV------------------------IE---IPAEPLEGNLPEILKPFKAVPPLVTDIDIS---LDDKFLYLSLWGIGEV 345 (462)
T ss_dssp EE------------------------EE---ECCEECCSSCCGGGGGGTEECCCCCCEEEC---TTSCEEEEEETTTTEE
T ss_pred EE------------------------Ee---CCCccccccccccccccccCCCceeEEEEC---CCCCEEEEEeCCCCEE
Confidence 00 00 0000000011 0102346789999 9999998776 46899
Q ss_pred EEEecCCCcceecccccceeeec-cc-------c------ccceEEEEeecCCCCcEEEee
Q 018858 292 KVWDCSRFQGVQTSINNDLLIKN-IN-------L------NKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 292 ~vwd~~~~~~~~~~~~~~~~~~~-~~-------~------~~~v~~~~~~~~~~~~l~~~~ 338 (349)
.+||+...... +++... .+ | .+....++++| ||++|+++.
T Consensus 346 avfdV~d~~~~------~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 346 RQYDISNPFKP------VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp EEEECSSTTSC------EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred EEEEecCCCCc------EEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 99998643211 111111 11 1 11357788887 888888887
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.36 E-value=7.3e-10 Score=93.76 Aligned_cols=209 Identities=9% Similarity=-0.011 Sum_probs=126.7
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC--cEEEEEcCCce
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG--DVKIIDIRQHC 136 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~ 136 (349)
.....++|+++++.+++...++.|++||..++........ ..... ++|+++++.|+++..++ .|.+++...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG----FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET----CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc----CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 3578899999999777777779999999986533222111 12334 89999999888888765 78888877554
Q ss_pred Eecee---ccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 137 LYKSL---RAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 137 ~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
....+ .......+.+++++| ++..|+++..++.|+.||..+
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p------------------------------------~~g~lyv~d~~~~I~~~d~~~ 249 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDE------------------------------------TEEWLYFVDSNKNFGRFNVKT 249 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECT------------------------------------TSSEEEEECTTCEEEEEETTT
T ss_pred eeEEeeeccchhcCCcEEEEEeC------------------------------------CCCeEEEEECCCcEEEEECCC
Confidence 33333 101345567788887 444455577788999999886
Q ss_pred ceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcc--eEEEEEeeecC-CccEEEEeeCCCe
Q 018858 214 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA--ASCVAFSMFGE-RGKYLISGGNDKL 290 (349)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~i~~~~~~~-~~~~l~s~~~d~~ 290 (349)
+..... ... ...++... ...++|+ | ++.++++-..++.
T Consensus 250 ~~~~~~-----------------------------------~~~-~~~g~~~~~P~~~ia~~---p~~g~lyv~d~~~~~ 290 (409)
T 3hrp_A 250 QEVTLI-----------------------------------KQL-ELSGSLGTNPGPYLIYY---FVDSNFYMSDQNLSS 290 (409)
T ss_dssp CCEEEE-----------------------------------EEC-CCCSCCCCSSCCEEEEE---TTTTEEEEEETTTTE
T ss_pred CCEEEE-----------------------------------ecc-cccCCCCCCccccEEEe---CCCCEEEEEeCCCCE
Confidence 421000 000 01111111 1289999 7 4666677677899
Q ss_pred EEEEecCCCcceecccc--ccee--eeccccccceEEEEeecCCCCcEEEee-CCCeEEEeeC
Q 018858 291 VKVWDCSRFQGVQTSIN--NDLL--IKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 291 i~vwd~~~~~~~~~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~ 348 (349)
|+.|+............ .... ......-.....+++.+ +++++++-. .++.|+.|++
T Consensus 291 I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 291 VYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp EEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEET
T ss_pred EEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEEC
Confidence 99999775311000000 0000 00000113478899987 777666656 7889999984
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.32 E-value=8.6e-10 Score=91.17 Aligned_cols=255 Identities=8% Similarity=-0.085 Sum_probs=151.5
Q ss_pred eEEEeCCCC----cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe----------CCCeEEEEEccCCCcccc
Q 018858 30 FVASSGEDG----CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 30 ~l~t~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~ 95 (349)
.+++-..++ +|.+.|..+++.+.++.....+ .+.++|++++++++. .++.|.+||..+++....
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~ 111 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD 111 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence 344444444 7889999999999999876666 799999999999886 368899999998765555
Q ss_pred eeeccCc----ccceEEEEEccCCCEEEEEcC--CCcEEE--EEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 96 LESYNYN----KEEINQIVCNPKSSFLACADD--GGDVKI--IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 96 ~~~~~~~----~~~v~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
+..-... ......++++||+++++++.. +..+.+ +|+.+ +..+. ... . +.+.|+
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~-v~~--~--~~~~p~---------- 173 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTK-SAS--C--FHIHPG---------- 173 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEE-CSS--C--CCCEEE----------
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEE-CCC--c--eEEccC----------
Confidence 4321000 123567899999999988864 456888 88876 34443 111 1 112331
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-----ceeeeec---CCCCCCccceeeeeccccE
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-----ELNISRS---KSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~ 239 (349)
....+++.+.||.+.+.|+.+ ++..... ......+. + .+++..
T Consensus 174 -------------------------g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~ 224 (368)
T 1mda_H 174 -------------------------AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGM 224 (368)
T ss_dssp -------------------------ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTE
T ss_pred -------------------------CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCE
Confidence 234555667788888888876 3322110 00001111 3 555544
Q ss_pred EEEeeeeeecCc-e-----eeeeeeeecC-------CC---cceEEEEEeeecCCccEEEEeeC---------CCeEEEE
Q 018858 240 DAEMEILDQSGG-K-----RLHLDYSVGG-------HT---AAASCVAFSMFGERGKYLISGGN---------DKLVKVW 294 (349)
Q Consensus 240 ~~~~~~~~~~~~-~-----~~~~~~~~~~-------h~---~~i~~i~~~~~~~~~~~l~s~~~---------d~~i~vw 294 (349)
++.... .... . .......+.- +. .....+.++ ++++.++.+.. ++.+.++
T Consensus 225 ~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s---~dg~~lyV~~~~~~~~~~~~~~~~~Vi 299 (368)
T 1mda_H 225 LVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL---KNTDGIMILTVEHSRSCLAAAENTSSV 299 (368)
T ss_dssp EEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE---TTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred EEEEcC--CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc---CCCCEEEEEeccccCcccccCCCEEEE
Confidence 433222 1110 0 0011111110 00 111126788 88887776532 2356699
Q ss_pred ecCCCcceecccccceeeeccccccceEEEEeecCCCC-cEEEee-CCCeEEEeeCC
Q 018858 295 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD-TSKVVKVYSIS 349 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~iw~~~ 349 (349)
|+.+. +.+..+.. ......+++++ |++ .+++.. .++.|.++|+.
T Consensus 300 D~~t~---------~vv~~i~v-g~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 300 TASVG---------QTSGPISN-GHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp ESSSC---------CEEECCEE-EEEECEEEECC-SSSCEEEEEETTTTEEEEEESS
T ss_pred ECCCC---------eEEEEEEC-CCCcceEEECC-CCCEEEEEccCCCCeEEEEECC
Confidence 99997 34433322 23688899988 776 455556 59999999973
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.32 E-value=7.5e-13 Score=110.63 Aligned_cols=141 Identities=9% Similarity=0.081 Sum_probs=77.8
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
+..+++++.||.|+.||..+++.++.+.. .++.+..+..++..+++++.|+.|+.||.++++......... ...+.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~--~~~~~ 84 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI--PELVQ 84 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH--HHHHT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC--ccccc
Confidence 57889999999999999999999988876 455555556677778888899999999998875432221100 01110
Q ss_pred -EEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCc
Q 018858 108 -QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186 (349)
Q Consensus 108 -~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
...+. .+..+++++.++.|+.||.++++.+..+. .+. ...++|
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~-~~~----~~~~~p------------------------------ 128 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS-SAF----ADSLSP------------------------------ 128 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC-----------------------------------------------------
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec-CCC----cccccc------------------------------
Confidence 00111 34567788889999999999999887776 332 123444
Q ss_pred ccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 187 ADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 187 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
++..+++++.++.|+.||.+++
T Consensus 129 ------~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 129 ------STSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp ----------EEEEEEEEEEECCCSSSS
T ss_pred ------cCCEEEEEecCCEEEEEECCCC
Confidence 5677888899999999999875
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.28 E-value=3e-10 Score=93.90 Aligned_cols=238 Identities=7% Similarity=-0.047 Sum_probs=146.2
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeC----------CCCcEEEEECCCCcEEEEeecCC-------CCeEEEE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVGN-------GPVTSLC 65 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~~~-------~~v~~~~ 65 (349)
.+++.+.++..-..+ .+.++|+ +++++.+. .++.|.+||..+++.+.++..+. .....++
T Consensus 54 ~t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 54 GCGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence 356677777655556 6999999 77777764 36889999999999998887541 2356799
Q ss_pred EecCCCEEEEEeC--CCeEEE--EEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCC-----c
Q 018858 66 FKSGNEDIIYVSS--GKEVKS--FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQ-----H 135 (349)
Q Consensus 66 ~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-----~ 135 (349)
++|+|++++++.. +..|.+ +|..+ ...+.. . . . +.+.|++ ..+++.+.|+.+.+.|+.+ +
T Consensus 131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~---~-~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 131 NCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-A---S-C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-S---S-C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred EcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-C---C-c--eEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 9999999999875 357888 88875 222221 1 1 1 1233444 4455666788888888876 4
Q ss_pred eEec----eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEc
Q 018858 136 CLYK----SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 211 (349)
Q Consensus 136 ~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 211 (349)
+... .+. -...+. . .+ ++..++..+. +.+.+.|.
T Consensus 201 ~v~~~~t~~i~-vg~~P~---~-~~------------------------------------~~~~~~~vs~-~~V~viD~ 238 (368)
T 1mda_H 201 IVGAQCTGAQN-CSSQAA---Q-AN------------------------------------YPGMLVWAVA-SSILQGDI 238 (368)
T ss_dssp ECCCCSCTTSC-BCSCCE---E-ET------------------------------------TTTEEEECBS-SCCEEEEC
T ss_pred eEEEEeeeeee-CCCCcc---c-cc------------------------------------cCCEEEEEcC-CEEEEEEC
Confidence 4321 111 111111 2 33 3445555555 89999998
Q ss_pred cCce--eeeecCCC---------CCCccceeeeeccccEEEEeee---------eeec---CceeeeeeeeecCCCcceE
Q 018858 212 ESEL--NISRSKST---------TKPLKGSQSTSKVNIRDAEMEI---------LDQS---GGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 212 ~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~h~~~i~ 268 (349)
.+.. ........ .......++++|+++.+.+... .+.. .....+.+..+... ....
T Consensus 239 ~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~ 317 (368)
T 1mda_H 239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSD 317 (368)
T ss_dssp CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEEC
T ss_pred CCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-CCcc
Confidence 7532 11111110 1112233789999988875322 1111 11223334444322 2578
Q ss_pred EEEEeeecCCcc-EEEEee-CCCeEEEEecCCC
Q 018858 269 CVAFSMFGERGK-YLISGG-NDKLVKVWDCSRF 299 (349)
Q Consensus 269 ~i~~~~~~~~~~-~l~s~~-~d~~i~vwd~~~~ 299 (349)
.+.++ +||+ .+++.. .++.|.++|+.+.
T Consensus 318 gi~~s---~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 318 AIIAA---QDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EEEEC---CSSSCEEEEEETTTTEEEEEESSSC
T ss_pred eEEEC---CCCCEEEEEccCCCCeEEEEECCCC
Confidence 99999 8987 556666 5899999999998
No 222
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.27 E-value=1.4e-08 Score=82.13 Aligned_cols=203 Identities=9% Similarity=0.055 Sum_probs=122.6
Q ss_pred ecCCCCeEEEEEecCCCE-EEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 55 DVGNGPVTSLCFKSGNED-IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
.....-..+..|++++.. +++...++.|..||..+++. ..+ . ....+.+++++++++++++. ++.|.+||..
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~---~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-T---MDAPVSSVALRQSGGYVATI--GTKFCALNWK 81 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-E---CSSCEEEEEEBTTSSEEEEE--TTEEEEEETT
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-e---CCCceEEEEECCCCCEEEEE--CCeEEEEECC
Confidence 334445567889996554 55556678999999986532 211 1 23678999999999955543 4679999998
Q ss_pred CceEeceecc---ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC-------
Q 018858 134 QHCLYKSLRA---GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD------- 203 (349)
Q Consensus 134 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------- 203 (349)
+++....... .....+..++++| +|+++++....
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~------------------------------------dG~l~~~~~~~~~~~~~~ 125 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDP------------------------------------AGRYFAGTMAEETAPAVL 125 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECT------------------------------------TSCEEEEEEECCSBTTBC
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECC------------------------------------CCCEEEecCCcccccccc
Confidence 7765332220 1123467777877 77766544221
Q ss_pred --CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccE
Q 018858 204 --GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 281 (349)
Q Consensus 204 --g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~ 281 (349)
..-.+|.+... ++ . ..+..+....+.++|+ |+++.
T Consensus 126 ~~~~~~l~~~d~~----------------------g~-----------------~-~~~~~~~~~pngi~~s---pdg~~ 162 (297)
T 3g4e_A 126 ERHQGALYSLFPD----------------------HH-----------------V-KKYFDQVDISNGLDWS---LDHKI 162 (297)
T ss_dssp CTTCEEEEEECTT----------------------SC-----------------E-EEEEEEESBEEEEEEC---TTSCE
T ss_pred cCCCcEEEEEECC----------------------CC-----------------E-EEEeeccccccceEEc---CCCCE
Confidence 22334443321 10 0 0111122346789999 89986
Q ss_pred EE-EeeCCCeEEEEecC--CCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 282 LI-SGGNDKLVKVWDCS--RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 282 l~-s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|+ +.+.++.|++|++. ++.... .+.+..+..+...+..+++.+ +|++.++...++.|..||.
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~----~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISN----RRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEE----EEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECT
T ss_pred EEEecCCCCcEEEEeccCCCCcccC----cEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcC
Confidence 64 55567899999974 332110 022223333445678889977 7776666667788999875
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=5.8e-09 Score=94.20 Aligned_cols=161 Identities=11% Similarity=0.073 Sum_probs=98.7
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecC--CCCeEEEEEec---CCCEEEEEe------CCCeEEEEEccCCCcccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVG--NGPVTSLCFKS---GNEDIIYVS------SGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 96 (349)
+..++.++.|+.|+.+|.++++.+..+... ......+..+| ++ .+++++ .++.|..||.++++.....
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 457888888999999999999998877642 11111111112 34 444443 3689999999998755443
Q ss_pred eeccC----------------------------cccceEEEEEccCCCEEEEEcCCCc-------------------EEE
Q 018858 97 ESYNY----------------------------NKEEINQIVCNPKSSFLACADDGGD-------------------VKI 129 (349)
Q Consensus 97 ~~~~~----------------------------~~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~i 129 (349)
..... .......+++.|+...++.+..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 32110 0011125788888889998887763 999
Q ss_pred EEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc---EEEEEcCCCeE
Q 018858 130 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK---ICVVAKGDGVV 206 (349)
Q Consensus 130 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~dg~i 206 (349)
+|.++++.+..++ ............. +.....+.+ +++ .++.++.+|.+
T Consensus 280 lD~~TG~~~W~~~-~~~~d~wd~~~~~-------------------~~~l~d~~~--------~G~~~~~v~~~~~~G~l 331 (689)
T 1yiq_A 280 VNADTGEYVWHYQ-TTPGDAWDYTATQ-------------------HMILAELPI--------DGKPRKVLMQAPKNGFF 331 (689)
T ss_dssp EETTTCCEEEEEE-SSTTCCSCCCCCS-------------------CEEEEEEEE--------TTEEEEEEEECCTTSEE
T ss_pred EEccCCceeEeee-cCCcccccccCCC-------------------CcEEEeecc--------CCcEEEEEEEECCCCeE
Confidence 9999999888776 2211111100000 000000000 343 78889999999
Q ss_pred EEEEccCceee
Q 018858 207 DVINIESELNI 217 (349)
Q Consensus 207 ~i~d~~~~~~~ 217 (349)
+++|.++++.+
T Consensus 332 ~~lD~~tG~~l 342 (689)
T 1yiq_A 332 YVIDRATGELL 342 (689)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCCEe
Confidence 99999998765
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.22 E-value=1e-07 Score=79.89 Aligned_cols=260 Identities=10% Similarity=0.036 Sum_probs=142.0
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCC---------CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGN---------GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
+..++.++.++.|..+|.++++.+....... ..+... ...++..+++++.++.|..+|.++++.......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 3567778888999999999999887776532 223222 222456788888999999999998865433322
Q ss_pred ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEE--EccCCCCCCCCCCCCCCccccCC
Q 018858 99 YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ--FIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
- ......... .+..+++++.++.|..+|.++++.+.... ... .+.... -.|
T Consensus 132 ~---~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~-~~~-~~~~~~~~~~~-------------------- 184 (376)
T 3q7m_A 132 A---GEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVN-LDM-PSLSLRGESAP-------------------- 184 (376)
T ss_dssp S---SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCC------CCCCCC--------------------
T ss_pred C---CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEe-CCC-CceeecCCCCc--------------------
Confidence 1 111111122 24578888889999999999999887766 221 111000 000
Q ss_pred ceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC---------ccceeeeeccccEEEEe--ee
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP---------LKGSQSTSKVNIRDAEM--EI 245 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~ 245 (349)
.+ .+..+++++.++.|..+|.++++..-........ .+.......++..++.. +.
T Consensus 185 ------~~--------~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~ 250 (376)
T 3q7m_A 185 ------TT--------AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN 250 (376)
T ss_dssp ------EE--------ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC
T ss_pred ------EE--------ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE
Confidence 00 2346777888999999999887665433221100 01111111122222211 00
Q ss_pred eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc-ccccceEEE
Q 018858 246 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKVNWL 324 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 324 (349)
.........+.+.... ......+.. ++..++.++.++.|+.+|..+++... ... .....+...
T Consensus 251 l~~~d~~tG~~~w~~~--~~~~~~~~~-----~~~~l~~~~~~g~l~~~d~~tG~~~w---------~~~~~~~~~~~~~ 314 (376)
T 3q7m_A 251 LTALDLRSGQIMWKRE--LGSVNDFIV-----DGNRIYLVDQNDRVMALTIDGGVTLW---------TQSDLLHRLLTSP 314 (376)
T ss_dssp EEEEETTTCCEEEEEC--CCCEEEEEE-----ETTEEEEEETTCCEEEEETTTCCEEE---------EECTTTTSCCCCC
T ss_pred EEEEECCCCcEEeecc--CCCCCCceE-----ECCEEEEEcCCCeEEEEECCCCcEEE---------eecccCCCcccCC
Confidence 0000001111111111 122334433 34567777788999999999985322 221 111122222
Q ss_pred EeecCCCCcEEEeeCCCeEEEeeC
Q 018858 325 CTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 325 ~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.. .+..|+.++.+|.++++|.
T Consensus 315 ~~---~~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 315 VL---YNGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp EE---ETTEEEEECTTSEEEEEET
T ss_pred EE---ECCEEEEEeCCCeEEEEEC
Confidence 22 2236888888888888875
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=7.5e-09 Score=93.27 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=75.0
Q ss_pred CCcEEEEECCCCcEEEEeecCCCC--------------------------------eEEEEEecCCCEEEEEeCCC----
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGP--------------------------------VTSLCFKSGNEDIIYVSSGK---- 80 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------v~~~~~~~~~~~l~~~~~dg---- 80 (349)
+|.|+.+|..+++.+..+...... ...++++|++..++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 689999999999998877643211 12467888889888887664
Q ss_pred ---------------eEEEEEccCCCcccceeeccCcc-------cceEEEEEccCC---CEEEEEcCCCcEEEEEcCCc
Q 018858 81 ---------------EVKSFDVHMPASWRPLESYNYNK-------EEINQIVCNPKS---SFLACADDGGDVKIIDIRQH 135 (349)
Q Consensus 81 ---------------~i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~ 135 (349)
.|..+|.++++.....+... |. .....+....+| ..++.++.+|.++++|.+++
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~-~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP-GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC-CcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 59999999887554443321 11 122223333466 67899999999999999999
Q ss_pred eEeceec
Q 018858 136 CLYKSLR 142 (349)
Q Consensus 136 ~~~~~~~ 142 (349)
+.+..++
T Consensus 348 ~~l~~~~ 354 (677)
T 1kb0_A 348 KFISAKN 354 (677)
T ss_dssp CEEEEEE
T ss_pred CEecccc
Confidence 9887765
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=4.5e-09 Score=94.71 Aligned_cols=155 Identities=11% Similarity=0.018 Sum_probs=101.0
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecC-C----CCeEE-EEEecCCCEEEEEeC------CCeEEEEEccCCCcccc
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVG-N----GPVTS-LCFKSGNEDIIYVSS------GKEVKSFDVHMPASWRP 95 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~----~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~ 95 (349)
+..|+.++.|+.|..+|..+++.+..+..+ . ..+.+ ... .+..+++++. ++.|+.+|.++++....
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 457888888999999999999999888754 2 11211 111 2345555543 68999999998875543
Q ss_pred eeeccCc-----------------------------ccceEEEEEccCCCEEEEEcCCC-------------------cE
Q 018858 96 LESYNYN-----------------------------KEEINQIVCNPKSSFLACADDGG-------------------DV 127 (349)
Q Consensus 96 ~~~~~~~-----------------------------~~~v~~~~~~~~~~~l~~~~~dg-------------------~i 127 (349)
....... ......++++|++..++.+..++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 3321110 01113578888888888887664 49
Q ss_pred EEEEcCCceEeceecccccc--------ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC---cE
Q 018858 128 KIIDIRQHCLYKSLRAGHSS--------ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KI 196 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 196 (349)
..+|.++++.+..++..+.. ...-+.... +| ..
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~------------------------------------dG~~~~~ 329 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI------------------------------------AGKPRKV 329 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE------------------------------------TTEEEEE
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc------------------------------------CCcEeeE
Confidence 99999999988776621110 000111111 45 67
Q ss_pred EEEEcCCCeEEEEEccCceeeeec
Q 018858 197 CVVAKGDGVVDVINIESELNISRS 220 (349)
Q Consensus 197 l~~~~~dg~i~i~d~~~~~~~~~~ 220 (349)
++.++.+|.++++|.++++.+...
T Consensus 330 l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 330 ILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp EEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEECCCCEEEEEECCCCCEeccc
Confidence 889999999999999998765543
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.20 E-value=1.8e-09 Score=97.96 Aligned_cols=197 Identities=12% Similarity=0.092 Sum_probs=118.5
Q ss_pred CCCCeEEEEEecCCCEEEEEeC-----CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCc-----
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSS-----GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD----- 126 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----- 126 (349)
+...+..++|||+|++||.+.. ...|++||+.+++.... .+. ......++|+ |++.|+.+..+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLK--DVKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEE--EEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccC--CceeccEEEe-CCCEEEEEEecCcccccc
Confidence 4456888999999999886432 25799999998764322 111 1113568999 9998988877643
Q ss_pred --------EEEEEcCCce----Eeceeccc-cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC
Q 018858 127 --------VKIIDIRQHC----LYKSLRAG-HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 193 (349)
Q Consensus 127 --------i~i~d~~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
|++|++.++. .+.... . +......+.|+| +
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~-~~~~~~~~~~~~Sp------------------------------------D 244 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAI-PAQHHRYVGATVTE------------------------------------D 244 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCS-GGGCCSEEEEEECT------------------------------------T
T ss_pred cccCCCcEEEEEECCCCcccceEEEecC-CCCCeEEEEEEEcC------------------------------------C
Confidence 9999987653 222222 2 333467788888 7
Q ss_pred CcEEEEEc----CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEE
Q 018858 194 NKICVVAK----GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC 269 (349)
Q Consensus 194 ~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 269 (349)
+++|+... ....|+++|+.++. .....+..+......
T Consensus 245 g~~l~~~~~~~~~~~~i~~~d~~~~~---------------------------------------~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 245 DRFLLISAANSTSGNRLYVKDLSQEN---------------------------------------APLLTVQGDLDADVS 285 (693)
T ss_dssp SCEEEEEEESSSSCCEEEEEETTSTT---------------------------------------CCCEEEECSSSSCEE
T ss_pred CCEEEEEEccCCCCcEEEEEECCCCC---------------------------------------CceEEEeCCCCceEE
Confidence 77775433 23589999987531 112233334444444
Q ss_pred EEEeeecCCcc-EEEEeeCC---CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee-CCC--e
Q 018858 270 VAFSMFGERGK-YLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSK--V 342 (349)
Q Consensus 270 i~~~~~~~~~~-~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~ 342 (349)
. ++ +++. +++....+ +.|..+|+.++.. .....+..|...+. .|++ +++.|+... .++ .
T Consensus 286 ~-~~---~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~--~~s~-~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 286 L-VD---NKGSTLYLLTNRDAPNRRLVTVDAANPGP-------AHWRDLIPERQQVL--TVHS-GSGYLFAEYMVDATAR 351 (693)
T ss_dssp E-EE---EETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCE--EEEE-ETTEEEEEEEETTEEE
T ss_pred E-Ee---ccCCEEEEEECCCCCCCEEEEEeCCCCCc-------cccEEEecCCCCEE--EEEE-ECCEEEEEEEECCeeE
Confidence 3 44 3444 44444433 6799999887532 11223344544444 6666 555666654 454 6
Q ss_pred EEEeeC
Q 018858 343 VKVYSI 348 (349)
Q Consensus 343 i~iw~~ 348 (349)
|++|++
T Consensus 352 l~~~d~ 357 (693)
T 3iuj_A 352 VEQFDY 357 (693)
T ss_dssp EEEECT
T ss_pred EEEEEC
Confidence 777775
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.19 E-value=3.3e-07 Score=72.77 Aligned_cols=158 Identities=11% Similarity=0.063 Sum_probs=100.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 94 (349)
....+++++++++.++++-..++.|..++.........+.........+++++++..|+.+ ...+.|.++++.... ..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EE
Confidence 4567899999745666666677899999987665443333333567899999976666555 456799999986432 22
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEcC---CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
.+. .........++++|++..|+.+.. .+.|..+++.... ...+..........++++|
T Consensus 115 ~~~--~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~--------------- 176 (267)
T 1npe_A 115 VLF--DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDA--------------- 176 (267)
T ss_dssp EEE--CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEET---------------
T ss_pred EEE--ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcC---------------
Confidence 221 111245788999997655554443 3678888875322 2222101223466778877
Q ss_pred cccCCceeEEeecCcccccCCCCcE-EEEEcCCCeEEEEEccC
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKI-CVVAKGDGVVDVINIES 213 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~ 213 (349)
++.. +++-...+.|..+|+..
T Consensus 177 ---------------------~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 177 ---------------------FSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp ---------------------TTTEEEEEETTTTEEEEEETTE
T ss_pred ---------------------CCCEEEEEECCCCEEEEEecCC
Confidence 5544 45555678999999874
No 229
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.19 E-value=4.3e-09 Score=86.48 Aligned_cols=215 Identities=7% Similarity=-0.051 Sum_probs=124.4
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEE
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (349)
..++.++.++.|..+|.. ++.......+...+.++...+++. +..++.++.|..+|.. ++...... .....+.+
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~---~~~~~~~~ 181 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK---TNDAITSA 181 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE---CSSCCCSC
T ss_pred CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe---cCCCceee
Confidence 356666677888888877 666666655555555566665555 5667777888888876 43322222 12234555
Q ss_pred EEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccc
Q 018858 109 IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDAD 188 (349)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (349)
+...+++...+ ++ +.|..+| .+++...... .....+.++...+
T Consensus 182 ~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~-------------------------------- 224 (330)
T 3hxj_A 182 ASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFY-AGYWTVTRPAISE-------------------------------- 224 (330)
T ss_dssp CEECTTCCEEE-ES--SSEEEEC-TTSCEEEEEC-CSSCCCSCCEECT--------------------------------
T ss_pred eEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEc-cCCcceeceEECC--------------------------------
Confidence 66666665443 44 6788888 6666655555 3344566666655
Q ss_pred ccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 189 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 189 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
++. +.+++.++.|..+|.... .+..+......+.
T Consensus 225 ----~g~-l~v~t~~~gl~~~~~~g~-----------------------------------------~~~~~~~~~~~~~ 258 (330)
T 3hxj_A 225 ----DGT-IYVTSLDGHLYAINPDGT-----------------------------------------EKWRFKTGKRIES 258 (330)
T ss_dssp ----TSC-EEEEETTTEEEEECTTSC-----------------------------------------EEEEEECSSCCCS
T ss_pred ----CCe-EEEEcCCCeEEEECCCCC-----------------------------------------EeEEeeCCCCccc
Confidence 444 445566677777764321 1111221222233
Q ss_pred EEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 269 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+.+. +++ .|..++.++.|..+|. ++ ..+.........+.++...+ ++ .|..++.+|.+++...
T Consensus 259 ~~~~~---~~g-~l~v~t~~ggl~~~d~-~g---------~~~~~~~~~~~~~~~~~~d~-~g-~l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 259 SPVIG---NTD-TIYFGSYDGHLYAINP-DG---------TEKWNFETGSWIIATPVIDE-NG-TIYFGTRNGKFYALFN 322 (330)
T ss_dssp CCEEC---TTS-CEEEECTTCEEEEECT-TS---------CEEEEEECSSCCCSCCEECT-TC-CEEEECTTSCEEEEEC
T ss_pred cceEc---CCC-eEEEecCCCCEEEECC-CC---------cEEEEEEcCCccccceEEcC-CC-EEEEEcCCCeEEEEec
Confidence 34444 455 5666777888999996 44 22222222344455665544 55 5888999999988654
No 230
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.19 E-value=4.2e-08 Score=80.50 Aligned_cols=152 Identities=11% Similarity=0.020 Sum_probs=96.7
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec----CCCCeEEEEEecCCCEEEEEeC------CCeEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV----GNGPVTSLCFKSGNEDIIYVSS------GKEVKS 84 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~------dg~i~i 84 (349)
...+.+++++++ ++++++. .+ .|.+||..+++....... ....+..++++|+|+++++... .+.|..
T Consensus 89 ~~~v~~i~~~~d-g~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 89 PFMGSALAKISD-SKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp SSCEEEEEEEET-TEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCcceEEEEeCC-CeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence 457899999998 7776655 33 499999988875433221 1235789999999987665432 245555
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEE-EcCCCcEEEEEcC--Cc-eE-----eceeccccccceeEEEEc
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLAC-ADDGGDVKIIDIR--QH-CL-----YKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~~-~~-----~~~~~~~~~~~v~~~~~~ 155 (349)
++ +++ ...+. ........++|+|+++.++. .+.++.|.+||+. ++ +. ...+. ........+++.
T Consensus 166 ~~--~g~-~~~~~---~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d 238 (326)
T 2ghs_A 166 VA--KGK-VTKLF---ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCD 238 (326)
T ss_dssp EE--TTE-EEEEE---EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEEC
T ss_pred Ee--CCc-EEEee---CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEEC
Confidence 55 332 22221 11234678999999987654 4567889999986 55 31 11222 223345566666
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
+ +++++++...++.|..||..
T Consensus 239 ~------------------------------------~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 239 A------------------------------------EGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp T------------------------------------TSCEEEEEETTTEEEEECTT
T ss_pred C------------------------------------CCCEEEEEeCCCEEEEECCC
Confidence 6 78777766667889999884
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.19 E-value=3.6e-08 Score=82.63 Aligned_cols=219 Identities=7% Similarity=0.050 Sum_probs=131.6
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCe-----EEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCc-
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPV-----TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYN- 102 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 102 (349)
..++.++.++.|..+|..+++.+.......... ...... +..++.++.++.|..+|.++++...........
T Consensus 144 ~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~ 221 (376)
T 3q7m_A 144 GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG 221 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC---
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC
Confidence 467778889999999999999888776432211 112222 456788888999999999887644332211000
Q ss_pred cc---ceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCc
Q 018858 103 KE---EINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPA 177 (349)
Q Consensus 103 ~~---~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (349)
.. .+..+.-.| .+..++.++.++.+..+|.++++.+.... .. ....+..
T Consensus 222 ~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~-~~--~~~~~~~----------------------- 275 (376)
T 3q7m_A 222 STEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE-LG--SVNDFIV----------------------- 275 (376)
T ss_dssp --------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC-CC--CEEEEEE-----------------------
T ss_pred CcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc-CC--CCCCceE-----------------------
Confidence 00 000000111 24577778888999999999998876655 21 2223322
Q ss_pred eeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeee
Q 018858 178 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD 257 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
++..+.+++.++.|..+|..+++. .
T Consensus 276 ---------------~~~~l~~~~~~g~l~~~d~~tG~~----------------------------------------~ 300 (376)
T 3q7m_A 276 ---------------DGNRIYLVDQNDRVMALTIDGGVT----------------------------------------L 300 (376)
T ss_dssp ---------------ETTEEEEEETTCCEEEEETTTCCE----------------------------------------E
T ss_pred ---------------ECCEEEEEcCCCeEEEEECCCCcE----------------------------------------E
Confidence 345677778899999999987531 1
Q ss_pred eeec-CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE-EEeecCCCCcEE
Q 018858 258 YSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTESENLV 335 (349)
Q Consensus 258 ~~~~-~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~ 335 (349)
.... .....+...... +..|+.++.+|.|+++|..+++ ++.........+.. ... . + ..|+
T Consensus 301 w~~~~~~~~~~~~~~~~-----~~~l~v~~~~g~l~~~d~~tG~---------~~~~~~~~~~~~~~~~~~-~-~-~~l~ 363 (376)
T 3q7m_A 301 WTQSDLLHRLLTSPVLY-----NGNLVVGDSEGYLHWINVEDGR---------FVAQQKVDSSGFQTEPVA-A-D-GKLL 363 (376)
T ss_dssp EEECTTTTSCCCCCEEE-----TTEEEEECTTSEEEEEETTTCC---------EEEEEECCTTCBCSCCEE-E-T-TEEE
T ss_pred EeecccCCCcccCCEEE-----CCEEEEEeCCCeEEEEECCCCc---------EEEEEecCCCcceeCCEE-E-C-CEEE
Confidence 1111 111122233333 3577788889999999999984 33222222222222 122 2 3 3788
Q ss_pred EeeCCCeEEEee
Q 018858 336 VCDTSKVVKVYS 347 (349)
Q Consensus 336 ~~~~dg~i~iw~ 347 (349)
.++.+|.|+.|+
T Consensus 364 v~~~~G~l~~~~ 375 (376)
T 3q7m_A 364 IQAKDGTVYSIT 375 (376)
T ss_dssp EEBTTSCEEEEE
T ss_pred EEeCCCEEEEEe
Confidence 899999999987
No 232
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=5.3e-09 Score=86.50 Aligned_cols=238 Identities=5% Similarity=-0.010 Sum_probs=135.1
Q ss_pred CCeEEEEEecCCCEEEEEeC--CCeEEEEEccCCCcccceee----ccCcccceEEEEEccCCCEEEEEcC-----CCcE
Q 018858 59 GPVTSLCFKSGNEDIIYVSS--GKEVKSFDVHMPASWRPLES----YNYNKEEINQIVCNPKSSFLACADD-----GGDV 127 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i 127 (349)
..+..++++++|+.+++... ++.++||.+.+++ ...+.. ...+...+..+++.++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 57889999999998887642 3435556554332 121111 1123457899999999887666543 5789
Q ss_pred EEEEcCCceEeceeccc-----cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-
Q 018858 128 KIIDIRQHCLYKSLRAG-----HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK- 201 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 201 (349)
.+||+.+++.+..+... +...+..++++|+ ++..+++..
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~-----------------------------------~g~~yvtd~~ 140 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI-----------------------------------HNFVYISDPA 140 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT-----------------------------------TTEEEEEECC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecC-----------------------------------CCEEEEEcCc
Confidence 99999988876665411 1234567777762 344455554
Q ss_pred --CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCc
Q 018858 202 --GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 279 (349)
Q Consensus 202 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~ 279 (349)
.++.|.+||+.+++.................+.++|..+.+. ..++ .. ..+ ...++.|+++ |++
T Consensus 141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~-~~~g------~~-~~~---~~~~~gia~s---~dg 206 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIG-QPDG------TV-IRP---HLGVNGIVLD---AEN 206 (343)
T ss_dssp SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEE-CTTS------CE-ECC---CCCEEEEEEC---TTS
T ss_pred cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEec-cCCC------ce-ece---ecccceeEec---cCC
Confidence 678999999987765544332111111113444455433210 0000 00 001 1246889999 899
Q ss_pred cEEEEeeCCC-eEEEEecCCCcceecccccceee--eccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 280 KYLISGGNDK-LVKVWDCSRFQGVQTSINNDLLI--KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 280 ~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++|+.+..++ .++.++....... ......... ...++......+++.+ +|.++++...++.|.+||.
T Consensus 207 ~~ly~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 207 EWLYLSPMHSTSMYRIKSADLSNL-QLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp CEEEEEESSCSEEEEEEHHHHTCT-TCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEET
T ss_pred CEEEEEeCCCCeEEEEEHHHhcCC-CCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEEC
Confidence 9888877665 5555543210000 000000100 1113344567788987 7877777778899999985
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.17 E-value=1.7e-08 Score=82.06 Aligned_cols=202 Identities=8% Similarity=-0.008 Sum_probs=121.0
Q ss_pred EEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (349)
+..+...........|+|+++ .+++...++.|..|+.. ++ .. .+......+..++++++++++++...++.|.+
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence 344444556678899999998 45666678899999873 32 22 22223466889999999997777666678999
Q ss_pred EEcCCceEeceecc--c-cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE----EcC
Q 018858 130 IDIRQHCLYKSLRA--G-HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV----AKG 202 (349)
Q Consensus 130 ~d~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~ 202 (349)
|+.. ++....... + ....+..+++.| +|+++++ |..
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~------------------------------------dG~l~~td~~~g~~ 154 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVAR------------------------------------DGAIWFTDPPFGLR 154 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECT------------------------------------TSCEEEECCSGGGS
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECC------------------------------------CCCEEEeCcCCCcc
Confidence 9975 443221110 1 112355677777 6777765 332
Q ss_pred -------------CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEE
Q 018858 203 -------------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC 269 (349)
Q Consensus 203 -------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 269 (349)
.+.|..||..+++. .. +. .....+.
T Consensus 155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~--------------------------------------~~---~~-~~~~p~g 192 (305)
T 3dr2_A 155 KPSQGCPADPELAHHSVYRLPPDGSPL--------------------------------------QR---MA-DLDHPNG 192 (305)
T ss_dssp CGGGSCCCCCSSSCEEEEEECSSSCCC--------------------------------------EE---EE-EESSEEE
T ss_pred ccccccccccccCCCeEEEEcCCCCcE--------------------------------------EE---Ee-cCCCCcc
Confidence 24455566543210 11 11 2234578
Q ss_pred EEEeeecCCccEEEEeeCC------CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeE
Q 018858 270 VAFSMFGERGKYLISGGND------KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 343 (349)
Q Consensus 270 i~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 343 (349)
++|+ |+++.|+.+... +.|++|++.... ... ...... .....+..+++.+ +|+ |.+++.+| |
T Consensus 193 l~~s---pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~---~~~~~~--~~~~~pdgi~~d~-~G~-lwv~~~~g-v 260 (305)
T 3dr2_A 193 LAFS---PDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHD---RRHFAS--VPDGLPDGFCVDR-GGW-LWSSSGTG-V 260 (305)
T ss_dssp EEEC---TTSSEEEEEECCC---CCCEEEEEEEETTE-EEE---EEEEEC--CSSSCCCSEEECT-TSC-EEECCSSE-E
T ss_pred eEEc---CCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccC---CeEEEE--CCCCCCCeEEECC-CCC-EEEecCCc-E
Confidence 8999 899877776654 789999987642 100 011111 1233455677766 676 55555444 7
Q ss_pred EEeeC
Q 018858 344 KVYSI 348 (349)
Q Consensus 344 ~iw~~ 348 (349)
.+|+.
T Consensus 261 ~~~~~ 265 (305)
T 3dr2_A 261 CVFDS 265 (305)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 77764
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=102.59 Aligned_cols=179 Identities=8% Similarity=0.051 Sum_probs=95.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccccc-
Q 018858 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS- 147 (349)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 147 (349)
++..+++++.|+.|+.||..+++....... ..+.+..+..++..+++++.||.|+.||.++++.+..+. .+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~-~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP-FTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS-CCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee-ccCcc
Confidence 577899999999999999998865544433 233344445567788888899999999999888766554 2211
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
.+. .+| .. . .+..+++++.++.|+.||.++++
T Consensus 82 ~~~---~sp------------------------------~~--~-~~~~v~~g~~dg~v~a~D~~tG~------------ 113 (369)
T 2hz6_A 82 LVQ---ASP------------------------------CR--S-SDGILYMGKKQDIWYVIDLLTGE------------ 113 (369)
T ss_dssp HHT---TCS------------------------------CC--------CCCCEEEEEEEEECCC---------------
T ss_pred ccc---cCc------------------------------eE--e-cCCEEEEEeCCCEEEEEECCCCc------------
Confidence 110 011 00 0 23467778889999999999763
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 307 (349)
.+..+..+. ...++ |++..+++++.|+.|+.||..+++....
T Consensus 114 ----------------------------~~w~~~~~~----~~~~~---p~~~~v~~~~~dg~v~a~d~~tG~~~W~--- 155 (369)
T 2hz6_A 114 ----------------------------KQQTLSSAF----ADSLS---PSTSLLYLGRTEYTITMYDTKTRELRWN--- 155 (369)
T ss_dssp ------------------------------------------------------EEEEEEEEEEECCCSSSSSCCCE---
T ss_pred ----------------------------EEEEecCCC----ccccc---ccCCEEEEEecCCEEEEEECCCCCEEEe---
Confidence 222222221 13345 6778899999999999999999854321
Q ss_pred cceeeeccccccceEEEEeecCCC---CcEEEeeCCCeEEEeeC
Q 018858 308 NDLLIKNINLNKKVNWLCTTPTES---ENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~iw~~ 348 (349)
...+ .....++.. +. ..+++++.||.|+.||.
T Consensus 156 ------~~~~--~~~~~~~~~-~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 156 ------ATYF--DYAASLPED-DVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp ------EEEE--EECCBCCCC-CTTCCCCEEEEETSCEEEEECT
T ss_pred ------Eecc--cccCccccC-CccccceEEEECCCCEEEEEEC
Confidence 1110 011122222 11 46788888999999886
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.15 E-value=1.7e-09 Score=88.94 Aligned_cols=272 Identities=9% Similarity=-0.002 Sum_probs=151.5
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
+..-++..+.....++.+..+ ..++.++.++.|..|| .+++.......+...+.++...+++. +..++.+ |..+
T Consensus 10 ~~~W~~~~~~~~~~~~~~d~~--g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~ 83 (330)
T 3hxj_A 10 KIKWEFLIGNSIDSSPILAKN--GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAI 83 (330)
T ss_dssp --CCTTTSCEEECCCCEECTT--SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEE
T ss_pred eEEEEEeCCCCcccCceEccC--CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEE
Confidence 344444444433444445444 4577778888999999 88887766655444556666666664 5555544 8888
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|. +++....... .........+. +..+..++.++.|..+|.. ++...... .....+.++...+
T Consensus 84 d~-~g~~~~~~~~---~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~--------- 146 (330)
T 3hxj_A 84 NP-DGTEKWRFDT---KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSE--------- 146 (330)
T ss_dssp CC-CGGGGGGSCC--------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECT---------
T ss_pred CC-CCcEEEEEEC---CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcC---------
Confidence 75 4432222211 11222223333 5567778888999999988 76665555 3444445555554
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
++. +.+++.++.|..+|.. ++....... ....+..+...+++..++..+.
T Consensus 147 ---------------------------~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~d~~g~l~v~t~~ 196 (330)
T 3hxj_A 147 ---------------------------DGT-IYVGSNDNYLYAINPD-GTEKWRFKT-NDAITSAASIGKDGTIYFGSDK 196 (330)
T ss_dssp ---------------------------TSC-EEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTCCEEEESSS
T ss_pred ---------------------------CCE-EEEEcCCCEEEEECCC-CCEeEEEec-CCCceeeeEEcCCCEEEEEeCE
Confidence 455 6667788999999988 544333222 2334566777777776664311
Q ss_pred eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEE
Q 018858 246 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 325 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 325 (349)
..... ...............+.++... ++|. |..++.++.|..+|.. + ..+.........+..+.
T Consensus 197 l~~~d-~~g~~~~~~~~~~~~~~~~~~~---~~g~-l~v~t~~~gl~~~~~~-g---------~~~~~~~~~~~~~~~~~ 261 (330)
T 3hxj_A 197 VYAIN-PDGTEKWNFYAGYWTVTRPAIS---EDGT-IYVTSLDGHLYAINPD-G---------TEKWRFKTGKRIESSPV 261 (330)
T ss_dssp EEEEC-TTSCEEEEECCSSCCCSCCEEC---TTSC-EEEEETTTEEEEECTT-S---------CEEEEEECSSCCCSCCE
T ss_pred EEEEC-CCCcEEEEEccCCcceeceEEC---CCCe-EEEEcCCCeEEEECCC-C---------CEeEEeeCCCCccccce
Confidence 11111 1112222333334557777777 6665 4556667888888743 3 22222222222233344
Q ss_pred eecCCCCcEEEeeCCCeEEEee
Q 018858 326 TTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 326 ~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..+ ++ .|..++.+|.|..+|
T Consensus 262 ~~~-~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 262 IGN-TD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp ECT-TS-CEEEECTTCEEEEEC
T ss_pred EcC-CC-eEEEecCCCCEEEEC
Confidence 432 33 677788887787776
No 236
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.13 E-value=2.8e-07 Score=75.41 Aligned_cols=238 Identities=8% Similarity=-0.017 Sum_probs=139.8
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC--------------------CCCeEEEEEecCCCEEEE
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG--------------------NGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~l~~ 75 (349)
....++++.++ +++++++..++.|..|+..+++.. .+... ...+..+++.++...|+.
T Consensus 19 ~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 34567889988 787888888899999998765542 22210 135788999973334555
Q ss_pred EeCCCeEEEEEccCCCcccceee-ccC-cccceEEEEEcc-CCCEEEEEcC-----------------CCcEEEEEcCCc
Q 018858 76 VSSGKEVKSFDVHMPASWRPLES-YNY-NKEEINQIVCNP-KSSFLACADD-----------------GGDVKIIDIRQH 135 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~-~~~-~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~ 135 (349)
+...+.|..+|..++. ...+.. ... .......+++.+ +++..++-.. ++.|..||..++
T Consensus 97 ~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 6555558888876432 122211 111 113467899999 8876665432 366888887766
Q ss_pred eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE-cCCCeEEEEEccCc
Q 018858 136 CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESE 214 (349)
Q Consensus 136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~ 214 (349)
+...... .......++++| +++.|.++ ...+.|..|++...
T Consensus 176 ~~~~~~~--~~~~p~gia~~~------------------------------------dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 176 ETTLLLK--ELHVPGGAEVSA------------------------------------DSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp EEEEEEE--EESCCCEEEECT------------------------------------TSSEEEEEEGGGTEEEEEESSST
T ss_pred EEEEecc--CCccCcceEECC------------------------------------CCCEEEEEeCCCCeEEEEECCCC
Confidence 5432222 122345677777 77755544 56789999998742
Q ss_pred eeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC-------
Q 018858 215 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN------- 287 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~------- 287 (349)
.. ...+....+. + ...++++ ++|++.++...
T Consensus 218 ~~-----------------------------------~~~~~~~~~~---g-P~gi~~d---~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 218 KK-----------------------------------GTAEVLVKIP---N-PGNIKRN---ADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp TT-----------------------------------TCEEEEEECS---S-EEEEEEC---TTSCEEEEEEEETTSSTT
T ss_pred cC-----------------------------------CccceEEeCC---C-CCCeEEC---CCCCEEEEecCccccccc
Confidence 10 0001111121 2 5678888 78876666544
Q ss_pred ---CCeEEEEecCCCcceecccccceeeecccc----ccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 288 ---DKLVKVWDCSRFQGVQTSINNDLLIKNINL----NKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 288 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+.|..+|... +.+..+... -..+..+++ . ++++.++....+.|..+++
T Consensus 256 ~~~~~~v~~~d~~G----------~~~~~~~~~~g~~~~~~~~~~~-~-~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 256 GRVDPKGIKFDEFG----------NILEVIPLPPPFAGEHFEQIQE-H-DGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp SCEEEEEEEECTTS----------CEEEEEECCTTTTTSCCCEEEE-E-TTEEEEECSSCSEEEEEEC
T ss_pred CCCccEEEEECCCC----------CEEEEEECCCCCccccceEEEE-e-CCEEEEeecCCCceEEEec
Confidence 46677887643 222222211 234566655 3 5655555557788888875
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.10 E-value=2e-07 Score=72.97 Aligned_cols=217 Identities=9% Similarity=-0.073 Sum_probs=127.6
Q ss_pred cEEEEeecCCC--CeEEEEEecCCCEEEEEeC--CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEE-EEEcC
Q 018858 49 DVQLVTDVGNG--PVTSLCFKSGNEDIIYVSS--GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFL-ACADD 123 (349)
Q Consensus 49 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~ 123 (349)
+.+.++. |.. ....++|++++...++.+. ++.|.++|+.+++....+.. .. ......+++. ++.+ ++.-.
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-~~-~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-DD-SYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-CT-TCCEEEEEEE--TTEEEEEETT
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-CC-CcceEEEEEe--CCEEEEEEec
Confidence 3455665 443 3689999998644444443 57999999998865544332 11 1122345554 4444 45556
Q ss_pred CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC
Q 018858 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 203 (349)
Q Consensus 124 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 203 (349)
++.+.++|..+.+.+.++..+ .. ....+++ +++.++++..+
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-~~--~g~glt~------------------------------------Dg~~l~vs~gs 125 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-MK--DGWGLAT------------------------------------DGKILYGSDGT 125 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-SS--SCCEEEE------------------------------------CSSSEEEECSS
T ss_pred CCEEEEEECCCCcEEEEEECC-CC--CeEEEEE------------------------------------CCCEEEEECCC
Confidence 789999999999998888722 11 2233455 55556666678
Q ss_pred CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEE
Q 018858 204 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI 283 (349)
Q Consensus 204 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~ 283 (349)
+.|.++|..+.+...... +..-...-..++.+.+. +++..+
T Consensus 126 ~~l~viD~~t~~v~~~I~-----------------------------------Vg~~~~p~~~~nele~~----dg~lyv 166 (266)
T 2iwa_A 126 SILYEIDPHTFKLIKKHN-----------------------------------VKYNGHRVIRLNELEYI----NGEVWA 166 (266)
T ss_dssp SEEEEECTTTCCEEEEEE-----------------------------------CEETTEECCCEEEEEEE----TTEEEE
T ss_pred CeEEEEECCCCcEEEEEE-----------------------------------ECCCCcccccceeEEEE----CCEEEE
Confidence 999999998743211110 00000011246788876 566666
Q ss_pred EeeCCCeEEEEecCCCcceecccccceeee--cc--ccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 284 SGGNDKLVKVWDCSRFQGVQTSINNDLLIK--NI--NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 284 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
....++.|.+.|..+++.........+... .. .-....+.+++.|...++++++...+.+.+-++
T Consensus 167 n~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 167 NIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred ecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 666678999999999854321110000000 00 011356899999844456666667788877654
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=1.8e-08 Score=87.00 Aligned_cols=261 Identities=10% Similarity=-0.014 Sum_probs=138.9
Q ss_pred cCCCceEEEe-CCCCcEEEEECCCCcEEEEeecC-CCCeEEEEE-e-cCCCEEEEEeC------------------CCeE
Q 018858 25 RDRPGFVASS-GEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCF-K-SGNEDIIYVSS------------------GKEV 82 (349)
Q Consensus 25 ~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~~------------------dg~i 82 (349)
+| |++++.. ..++.|.+-|+.+.+....+.-. ......+++ + |++++++++++ ++.+
T Consensus 99 ~D-G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YD-GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EE-EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cC-CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 35 5665554 44577999999999987755432 356888887 5 99999988852 3578
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC---------------cEEEEEcCCceEeceeccccc-
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG---------------DVKIIDIRQHCLYKSLRAGHS- 146 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~i~d~~~~~~~~~~~~~~~- 146 (349)
.+.|.++.+....+.. . .....++++|+++++++.+.+. .|.++|....+. ..+.+..
T Consensus 178 tvID~~t~~v~~qI~V---g-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~--~v~~Gk~~ 251 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLV---S-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--AIAAGDYQ 251 (595)
T ss_dssp EEEETTTTEEEEEEEE---S-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--HHHHTCSE
T ss_pred EEEECCCCeEEEEEEe---C-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE--eccCCCee
Confidence 9999987543333322 1 2345678999999998887553 245555432110 0000000
Q ss_pred --cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCC
Q 018858 147 --SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKST 223 (349)
Q Consensus 147 --~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~ 223 (349)
+.|.-+..... ..........-....+++.++| ||+++++++ .+.+|.++|+.+.+....-.
T Consensus 252 ~i~~V~VID~~~~-------~~~~~~~~Ipvg~~PhGv~~sP------DGk~v~V~~~~s~~VsVid~~~~~~~~~~~-- 316 (595)
T 1fwx_A 252 ELNGVKVVDGRKE-------ASSLFTRYIPIANNPHGCNMAP------DKKHLCVAGKLSPTVTVLDVTRFDAVFYEN-- 316 (595)
T ss_dssp EETTEEEEECSGG-------GCCSSEEEEEEESSCCCEEECT------TSSEEEEECTTSSBEEEEEGGGHHHHHHSC--
T ss_pred EECcEEEEeCccc-------CCceeEEEEecCCCceEEEEcC------CCCEEEEeCCCCCeEEEEECcccccccccc--
Confidence 00111100000 0000000011112345556665 888777665 67899999999632110000
Q ss_pred CCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
+.++. .......- ......++|+ ++|...++.-.|+.|.+||+.......
T Consensus 317 ---------l~~~~-----------------~v~~~v~v-G~gP~h~aF~---~dG~aY~t~~ldsqV~kwdi~~a~~~~ 366 (595)
T 1fwx_A 317 ---------ADPRS-----------------AVVAEPEL-GLGPLHTAFD---GRGNAYTSLFLDSQVVKWNIEDAIRAY 366 (595)
T ss_dssp ---------CCGGG-----------------GEEECCBC-CSCEEEEEEC---TTSEEEEEETTTTEEEEEEHHHHHHHH
T ss_pred ---------cCccc-----------------ceEEEcCC-CCCcceEEEC---CCCeEEEEEecCCcEEEEEhhHhhhhh
Confidence 00111 11122222 2346789999 899555566789999999997721000
Q ss_pred cc-cccceeeeccccccc-----eEEEEeecCCCCcEEEee
Q 018858 304 TS-INNDLLIKNINLNKK-----VNWLCTTPTESENLVVCD 338 (349)
Q Consensus 304 ~~-~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~ 338 (349)
.. ...+.+....-|-.+ -..+...| ||++|+++.
T Consensus 367 ~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~N 406 (595)
T 1fwx_A 367 AGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLS 406 (595)
T ss_dssp HTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEE
T ss_pred cccccceeEEEeecccccccceeccceEeCC-CCCEEEEcC
Confidence 00 000333333333221 12223445 899988884
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=1.4e-07 Score=73.79 Aligned_cols=215 Identities=10% Similarity=0.058 Sum_probs=134.6
Q ss_pred CCCCeeeeCCce--eeeEEEEecCCCceEEEeCC--CCcEEEEECCCCcEEEEeecCCC-CeEEEEEecCCCEEEEEe-C
Q 018858 5 EAKPRRLRGHKA--TATCCIASRDRPGFVASSGE--DGCICWFDLRSKDVQLVTDVGNG-PVTSLCFKSGNEDIIYVS-S 78 (349)
Q Consensus 5 ~~~~~~l~~h~~--~i~~~~~~~~~~~~l~t~~~--dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~ 78 (349)
.+.++++. |.. ....+.|+++ +.++++.+. ++.|.+.|+.+++.+..+..... ....+++. ++.|+.+. .
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34556664 443 3578999987 655555543 57999999999999888764322 22345554 55665554 5
Q ss_pred CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccc-c---ceeEEEE
Q 018858 79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS-S---ICSSVQF 154 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~---~v~~~~~ 154 (349)
++.+.++|..+.+....+.. .... ...++++++.++++..++.|.++|..+.+.+..+.-+.. . .+..+.|
T Consensus 85 ~~~v~viD~~t~~v~~~i~~---g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTH---QMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp CSEEEEEETTTTEEEEEEEC---CSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEC---CCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 78999999987644433322 1011 233556787777777788999999999888777662111 1 2445555
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
. ++..++....++.|.+.|..+++......-.
T Consensus 160 ~-------------------------------------dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~----------- 191 (266)
T 2iwa_A 160 I-------------------------------------NGEVWANIWQTDCIARISAKDGTLLGWILLP----------- 191 (266)
T ss_dssp E-------------------------------------TTEEEEEETTSSEEEEEETTTCCEEEEEECH-----------
T ss_pred E-------------------------------------CCEEEEecCCCCeEEEEECCCCcEEEEEECC-----------
Confidence 4 3555555556789999999986432221100
Q ss_pred ccccEEEEeeeeeecCceeeeeeee--ec--CCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCC
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYS--VG--GHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~ 299 (349)
.+... .. ......+.|+++ |+++ +++++...+.|++.++...
T Consensus 192 --------------------g~~~~~~~~~~~~~~v~nGIa~~---~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 192 --------------------NLRKKLIDEGFRDIDVLNGIAWD---QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp --------------------HHHHHHHHTTCTTCCCEEEEEEE---TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred --------------------CcccccccccccccCceEEEEEc---CCCCEEEEECCCCCeEEEEEEecc
Confidence 00000 00 011356899999 7765 5667777899999998764
No 240
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=99.05 E-value=8.3e-07 Score=69.03 Aligned_cols=169 Identities=7% Similarity=0.051 Sum_probs=112.1
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
+.|.+-.+.+..++++|+++.++++...++.|...|.. ++.+..+.. .......+++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 34556567899999999855566667778999999998 887777653 2356788999988877666556788999988
Q ss_pred cCCCcccceeec------cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC---ceEeceec------cccccceeEE
Q 018858 88 HMPASWRPLESY------NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---HCLYKSLR------AGHSSICSSV 152 (349)
Q Consensus 88 ~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~------~~~~~~v~~~ 152 (349)
........+... .........++|+|.++.|.++.+.....+|.+.. ...+..+. ..+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 754322211111 11234578999999997777777665556665541 11111111 0122345667
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
+++|. .+++++.......|..+|...
T Consensus 179 ~~dp~-----------------------------------tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 179 EFNQQ-----------------------------------KNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp EEETT-----------------------------------TTEEEEEETTTTEEEEECTTC
T ss_pred EEcCC-----------------------------------CCeEEEEECCCCeEEEEcCCC
Confidence 77764 677888888888999999875
No 241
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.04 E-value=2.4e-07 Score=71.65 Aligned_cols=202 Identities=8% Similarity=0.012 Sum_probs=118.8
Q ss_pred EEEEeecCCCC--eEEEEEecCCCEEEEEeCCC--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEE-EcCC
Q 018858 50 VQLVTDVGNGP--VTSLCFKSGNEDIIYVSSGK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLAC-ADDG 124 (349)
Q Consensus 50 ~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d 124 (349)
.+.+++ |... ...+.|+ ++.+..+.+.+| .|+++|+++++....+.. . .......+.++++.|.. .-.+
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~---~~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-G---KRYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-C---TTCCEEEEEEETTEEEEEESSS
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-C---CccceeEEEEeCCEEEEEEeeC
Confidence 455664 5433 4788998 666666666665 899999998865544432 1 22322222233445544 4457
Q ss_pred CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC
Q 018858 125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 204 (349)
Q Consensus 125 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 204 (349)
+.+.+||..+.+.+.++. .. . ....+.+ +++.|+.+..++
T Consensus 107 ~~v~v~D~~t~~~~~ti~-~~-~--eG~glt~------------------------------------dg~~L~~SdGs~ 146 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFN-YD-G--EGWGLTH------------------------------------NDQYLIMSDGTP 146 (262)
T ss_dssp SEEEEEETTTCCEEEEEE-CS-S--CCCCEEE------------------------------------CSSCEEECCSSS
T ss_pred CEEEEEECccCcEEEEEE-CC-C--CceEEec------------------------------------CCCEEEEECCCC
Confidence 899999999999999888 22 2 2223334 566666666688
Q ss_pred eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC-CcceEEEEEeeecCCccEEE
Q 018858 205 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLI 283 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~i~~~~~~~~~~~l~ 283 (349)
.|.++|..+.+...... -...+. -..++.+.+. +|+..+
T Consensus 147 ~i~~iDp~T~~v~~~I~------------------------------------V~~~g~~~~~lNELe~~----~G~lya 186 (262)
T 3nol_A 147 VLRFLDPESLTPVRTIT------------------------------------VTAHGEELPELNELEWV----DGEIFA 186 (262)
T ss_dssp EEEEECTTTCSEEEEEE------------------------------------CEETTEECCCEEEEEEE----TTEEEE
T ss_pred eEEEEcCCCCeEEEEEE------------------------------------eccCCccccccceeEEE----CCEEEE
Confidence 99999998753211110 001111 1345677776 677666
Q ss_pred EeeCCCeEEEEecCCCcceecccccceeee---ccccccceEEEEeecCCCCcEEEe
Q 018858 284 SGGNDKLVKVWDCSRFQGVQTSINNDLLIK---NINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 284 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
..-.++.|.+.|..+++......-..+... ...-....+.||+.|....+++||
T Consensus 187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 666788999999999865432211111100 011124679999998544444444
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.01 E-value=6.6e-07 Score=74.73 Aligned_cols=200 Identities=10% Similarity=0.023 Sum_probs=119.5
Q ss_pred cCCCEEEEEe-CCCeEEEEEccCC-Ccccceeecc-------CcccceEEEEEccCCCEEEEEcCC------CcEEEEEc
Q 018858 68 SGNEDIIYVS-SGKEVKSFDVHMP-ASWRPLESYN-------YNKEEINQIVCNPKSSFLACADDG------GDVKIIDI 132 (349)
Q Consensus 68 ~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~ 132 (349)
+++++|+..+ .++.|.++|+.+. ...+..+.+. ........+...|++ .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 7788776654 6789999999753 2223333331 011245567888999 66665554 68999999
Q ss_pred CCceEeceeccccc--cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc---------
Q 018858 133 RQHCLYKSLRAGHS--SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--------- 201 (349)
Q Consensus 133 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------- 201 (349)
++.+++.++..+.. .--+.+-|+| +++.+++..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p------------------------------------~~~~mvsS~wg~p~~~~~ 215 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNL------------------------------------PNEVLVSSEWAVPNTIED 215 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEET------------------------------------TTTEEEECBCCCHHHHTT
T ss_pred CCCeEEEEEccCCCCccccceEEECC------------------------------------CCCEEEEccCcCcccccc
Confidence 99999888762211 2234577788 677777764
Q ss_pred ----------CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC--CCcceEE
Q 018858 202 ----------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG--HTAAASC 269 (349)
Q Consensus 202 ----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~ 269 (349)
.+.+|.+||+.+++.. .++.- .......
T Consensus 216 g~~~~~~~~~~~d~V~v~D~~~~k~~----------------------------------------~tI~vg~~g~~P~~ 255 (462)
T 2ece_A 216 GLKLEHLKDRYGNRIHFWDLRKRKRI----------------------------------------HSLTLGEENRMALE 255 (462)
T ss_dssp CCCTTTHHHHSCCEEEEEETTTTEEE----------------------------------------EEEESCTTEEEEEE
T ss_pred ccchhhhhhccCCEEEEEECCCCcEe----------------------------------------eEEecCCCCCccce
Confidence 3689999999875322 22221 1123344
Q ss_pred EEE--eeecCCccEEEEee------CCCeEEEEecCCCcceecc----cccceeeec-------cccccceEEEEeecCC
Q 018858 270 VAF--SMFGERGKYLISGG------NDKLVKVWDCSRFQGVQTS----INNDLLIKN-------INLNKKVNWLCTTPTE 330 (349)
Q Consensus 270 i~~--~~~~~~~~~l~s~~------~d~~i~vwd~~~~~~~~~~----~~~~~~~~~-------~~~~~~v~~~~~~~~~ 330 (349)
+.| + |++++++.++ .+++|.+|..+.+.-.... ...+....+ .+-......+.+++ |
T Consensus 256 i~f~~~---Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-D 331 (462)
T 2ece_A 256 LRPLHD---PTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL-D 331 (462)
T ss_dssp EEECSS---TTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT-T
T ss_pred eEeeEC---CCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC-C
Confidence 545 6 7787776665 3467777666542210000 000000000 00124577888987 8
Q ss_pred CCcEEEee-CCCeEEEeeC
Q 018858 331 SENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 331 ~~~l~~~~-~dg~i~iw~~ 348 (349)
+++|+++. ..+.|.++|+
T Consensus 332 GrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp SCEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEe
Confidence 88888886 4689999987
No 243
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.00 E-value=9.3e-08 Score=86.39 Aligned_cols=184 Identities=8% Similarity=0.022 Sum_probs=124.7
Q ss_pred EEEEecCCCceEEEeCCCCc-------------------EEEEECCCCcEEEEeec--CC-------CCeEEEEEecCCC
Q 018858 20 CCIASRDRPGFVASSGEDGC-------------------ICWFDLRSKDVQLVTDV--GN-------GPVTSLCFKSGNE 71 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~-------------------i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~ 71 (349)
.++++|+ ..+++.+..++. |..+|.++++.+..++. |. .++.......+|+
T Consensus 239 ~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 5788887 678888877763 99999999999888764 21 1222223333565
Q ss_pred ---EEEEEeCCCeEEEEEccCCCcccceeecc-------------------------Cccc-----------ceEEEEEc
Q 018858 72 ---DIIYVSSGKEVKSFDVHMPASWRPLESYN-------------------------YNKE-----------EINQIVCN 112 (349)
Q Consensus 72 ---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~~~-----------~v~~~~~~ 112 (349)
.++.++.+|.++++|.++++.+....... .... .-..++++
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78889999999999999886542111100 0000 01126788
Q ss_pred cCCCEEEEEcC---------------------------------------------CCcEEEEEcCCceEeceecccccc
Q 018858 113 PKSSFLACADD---------------------------------------------GGDVKIIDIRQHCLYKSLRAGHSS 147 (349)
Q Consensus 113 ~~~~~l~~~~~---------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~ 147 (349)
|+..++++... +|.|+.||+.+++.+.+++ .+ .
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~-~ 475 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP-YV-T 475 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE-ES-S
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc-CC-C
Confidence 88777776522 3678889999988887776 22 2
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
+...-.+.. .+.++++++.||.|+.||.++++.+-.........
T Consensus 476 ~~~~g~~~t------------------------------------agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~ 519 (689)
T 1yiq_A 476 IFNGGTLST------------------------------------AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM 519 (689)
T ss_dssp SCCCCEEEE------------------------------------TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CccCccceE------------------------------------CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc
Confidence 222223333 57788899999999999999998887776665555
Q ss_pred cceeeeeccccEEEE
Q 018858 228 KGSQSTSKVNIRDAE 242 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~ 242 (349)
..-+.+..+|+..++
T Consensus 520 ~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 520 AAPVTYSVDGEQYVT 534 (689)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred cCceEEEECCEEEEE
Confidence 566788888886654
No 244
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.99 E-value=1e-06 Score=67.60 Aligned_cols=203 Identities=11% Similarity=0.008 Sum_probs=119.1
Q ss_pred EEEEeecCC--CCeEEEEEecCCCEEEEEeCC--CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC
Q 018858 50 VQLVTDVGN--GPVTSLCFKSGNEDIIYVSSG--KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG 125 (349)
Q Consensus 50 ~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (349)
.+.+++ |. .....+.|++ +....+.+.. ..|+.+|+++++....+..-. . ..-..+++.. ++.....-.++
T Consensus 11 v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~-~fgeGi~~~~-~~ly~ltw~~~ 85 (243)
T 3mbr_X 11 VVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-P-YFGAGIVAWR-DRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-T-CCEEEEEEET-TEEEEEESSSS
T ss_pred EEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-C-cceeEEEEeC-CEEEEEEeeCC
Confidence 455554 44 4466899986 5555555654 489999999886554443211 1 1112334332 33444455688
Q ss_pred cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCe
Q 018858 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV 205 (349)
Q Consensus 126 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 205 (349)
.+.+||.++.+.+.+++ .. ..-..++ + ++..|+++..++.
T Consensus 86 ~v~v~D~~tl~~~~ti~-~~-~~Gwglt--~------------------------------------dg~~L~vSdgs~~ 125 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFR-YP-GEGWALT--S------------------------------------DDSHLYMSDGTAV 125 (243)
T ss_dssp EEEEEETTTTEEEEEEE-CS-SCCCEEE--E------------------------------------CSSCEEEECSSSE
T ss_pred EEEEEECCcCcEEEEEe-CC-CCceEEe--e------------------------------------CCCEEEEECCCCe
Confidence 99999999999999988 22 2223333 4 4556666667899
Q ss_pred EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC-CCcceEEEEEeeecCCccEEEE
Q 018858 206 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLIS 284 (349)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s 284 (349)
|.++|..+.+....... ...+ .-..++.+.+. +|+..+.
T Consensus 126 l~~iDp~t~~~~~~I~V------------------------------------~~~g~~~~~lNeLe~~----~G~lyan 165 (243)
T 3mbr_X 126 IRKLDPDTLQQVGSIKV------------------------------------TAGGRPLDNLNELEWV----NGELLAN 165 (243)
T ss_dssp EEEECTTTCCEEEEEEC------------------------------------EETTEECCCEEEEEEE----TTEEEEE
T ss_pred EEEEeCCCCeEEEEEEE------------------------------------ccCCcccccceeeEEe----CCEEEEE
Confidence 99999987532211100 0011 11345777775 7776666
Q ss_pred eeCCCeEEEEecCCCcceecccccceeeec----cccccceEEEEeecCCCCcEEEe
Q 018858 285 GGNDKLVKVWDCSRFQGVQTSINNDLLIKN----INLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 285 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
.-.+..|.+.|..+++......-..+.... ..-.+..+.||+.|...++++||
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 656789999999998654322211111100 11234679999999555555555
No 245
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.97 E-value=9e-07 Score=68.45 Aligned_cols=202 Identities=8% Similarity=-0.083 Sum_probs=122.4
Q ss_pred EEEEeecCCC--CeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcE
Q 018858 50 VQLVTDVGNG--PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127 (349)
Q Consensus 50 ~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (349)
.+.++. |.. ....+.|+ ++.+..+.+.+|.|+++|+++++....+ +.. ......+++.. ++..+..-.++.+
T Consensus 45 Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~-~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 45 IIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG-NIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT-TCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC-CcceeEEEEeC-CEEEEEEccCCEE
Confidence 445554 443 34788887 3566667778889999999998766555 321 11122345432 2344444568899
Q ss_pred EEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
.+||.++.+.+.++. . ...-..++ + +++.|+.+..++.|.
T Consensus 119 ~V~D~~Tl~~~~ti~-~-~~eGwGLt--~------------------------------------Dg~~L~vSdGs~~l~ 158 (268)
T 3nok_A 119 FTWSGMPPQRERTTR-Y-SGEGWGLC--Y------------------------------------WNGKLVRSDGGTMLT 158 (268)
T ss_dssp EEEETTTTEEEEEEE-C-SSCCCCEE--E------------------------------------ETTEEEEECSSSEEE
T ss_pred EEEECCcCcEEEEEe-C-CCceeEEe--c------------------------------------CCCEEEEECCCCEEE
Confidence 999999999999888 2 22223343 3 566777777789999
Q ss_pred EEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC-CCcceEEEEEeeecCCccEEEEee
Q 018858 208 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
++|..+.+....... ...+ .-..++.+.|. +|+..+..-
T Consensus 159 ~iDp~T~~v~~~I~V------------------------------------~~~g~~v~~lNeLe~~----dG~lyanvw 198 (268)
T 3nok_A 159 FHEPDGFALVGAVQV------------------------------------KLRGQPVELINELECA----NGVIYANIW 198 (268)
T ss_dssp EECTTTCCEEEEEEC------------------------------------EETTEECCCEEEEEEE----TTEEEEEET
T ss_pred EEcCCCCeEEEEEEe------------------------------------CCCCcccccccccEEe----CCEEEEEEC
Confidence 999987532211110 0010 11245778876 777666665
Q ss_pred CCCeEEEEecCCCcceecccccceeee----ccccccceEEEEeecCCCCcEEEe
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIK----NINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
.+..|.+.|..+++......-..+... ...-.+..+.||+.|...++++||
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 788999999999865432211111000 011224679999998555555555
No 246
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.94 E-value=5.1e-06 Score=67.35 Aligned_cols=237 Identities=12% Similarity=0.010 Sum_probs=134.0
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC-C-eEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-K-EVKS 84 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-~i~i 84 (349)
.+..+... .....++|+++ ++++++-..++.|..||... +....+. ....+..+++.++++.+++.... + .|..
T Consensus 24 ~~~~~p~~-~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPD-GTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEECTT-CCEEEEEECTT-SCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred EeEeCCCC-CCcceEEECCC-CCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 34444332 45678899997 77777777789999999765 3333333 33568899999999865554332 2 4666
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE-eceecc--------ccccceeEEEEc
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRA--------GHSSICSSVQFI 155 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~--------~~~~~v~~~~~~ 155 (349)
++..+++. ..+..... ......++..+++..+++-..++.|+++|...++. +..... ..-.....+ +
T Consensus 100 ~d~~~g~~-~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 100 LVKSDGTV-ETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EECTTSCE-EEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EcCCCCeE-EEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 77666542 22222211 12234455555555555555678899999765421 110000 000011122 3
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccC-ceeeeecCCCCCCccceeee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~ 233 (349)
| +++.| ++-...+.|..|++.. +..
T Consensus 176 ~------------------------------------dg~~lyv~d~~~~~I~~~~~~~~g~~----------------- 202 (306)
T 2p4o_A 176 R------------------------------------FGNFLYVSNTEKMLLLRIPVDSTDKP----------------- 202 (306)
T ss_dssp E------------------------------------ETTEEEEEETTTTEEEEEEBCTTSCB-----------------
T ss_pred c------------------------------------CCCEEEEEeCCCCEEEEEEeCCCCCC-----------------
Confidence 3 55544 4555678999999874 100
Q ss_pred eccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccce--e
Q 018858 234 SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL--L 311 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~ 311 (349)
...+....+ .....++++ ++|+++++....+.|.++|.. + .. +
T Consensus 203 ------------------~~~~~~~~~----~~P~gi~vd---~dG~l~va~~~~~~V~~~~~~-G---------~~~~~ 247 (306)
T 2p4o_A 203 ------------------GEPEIFVEQ----TNIDDFAFD---VEGNLYGATHIYNSVVRIAPD-R---------STTII 247 (306)
T ss_dssp ------------------CCCEEEEES----CCCSSEEEB---TTCCEEEECBTTCCEEEECTT-C---------CEEEE
T ss_pred ------------------CccEEEecc----CCCCCeEEC---CCCCEEEEeCCCCeEEEECCC-C---------CEEEE
Confidence 000111111 234668888 899887777777899999975 3 22 1
Q ss_pred eeccccccceEEEEeec--CCCCcEEEeeC
Q 018858 312 IKNINLNKKVNWLCTTP--TESENLVVCDT 339 (349)
Q Consensus 312 ~~~~~~~~~v~~~~~~~--~~~~~l~~~~~ 339 (349)
.........+++++|.. ++++.|+.++.
T Consensus 248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 248 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp ECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred eecccccCCceEEEEecccCCCCEEEEECC
Confidence 11222234678899972 36666666653
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.94 E-value=4.9e-06 Score=65.99 Aligned_cols=222 Identities=7% Similarity=0.004 Sum_probs=123.8
Q ss_pred eEEEeCCCCcEEEEECCCCcE-----EEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcccceeeccCcc
Q 018858 30 FVASSGEDGCICWFDLRSKDV-----QLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNK 103 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 103 (349)
+|+.+.. +.|+.+++..... ...+......+..++|+++++.|+.+. ..+.|..++...... ..+ .....
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~--~~~~~ 78 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTI--IRQDL 78 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEE--ECTTC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEE--EECCC
Confidence 4444443 4688888765432 112222224578899999776666554 568999999875432 111 11122
Q ss_pred cceEEEEEccCCCEE-EEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEe
Q 018858 104 EEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAI 182 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (349)
.....+++++++..+ ++-...+.|.++++.......... ........++++|
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~i~vd~-------------------------- 131 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TGLVNPRGIVTDP-------------------------- 131 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEET--------------------------
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-CCCCCccEEEEee--------------------------
Confidence 467899999976554 455567789999986432211122 1223467788887
Q ss_pred ecCcccccCCCCcEEEEEcC---CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeee
Q 018858 183 AIPDADMLDKTNKICVVAKG---DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS 259 (349)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
++..|..+.. .+.|..+++..... ..+
T Consensus 132 ----------~~g~lyv~~~~~~~~~I~~~~~dg~~~--------------------------------------~~~-- 161 (267)
T 1npe_A 132 ----------VRGNLYWTDWNRDNPKIETSHMDGTNR--------------------------------------RIL-- 161 (267)
T ss_dssp ----------TTTEEEEEECCSSSCEEEEEETTSCCC--------------------------------------EEE--
T ss_pred ----------CCCEEEEEECCCCCcEEEEEecCCCCc--------------------------------------EEE--
Confidence 4444444432 36777777764210 011
Q ss_pred ecCCCcceEEEEEeeecCCccEE-EEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee
Q 018858 260 VGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 260 ~~~h~~~i~~i~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
..........++++ +++..| ++-...+.|.++|..... ....... ......++.. + ..|+.+.
T Consensus 162 ~~~~~~~P~gia~d---~~~~~lyv~d~~~~~I~~~~~~g~~---------~~~~~~~-~~~P~gi~~d--~-~~lyva~ 225 (267)
T 1npe_A 162 AQDNLGLPNGLTFD---AFSSQLCWVDAGTHRAECLNPAQPG---------RRKVLEG-LQYPFAVTSY--G-KNLYYTD 225 (267)
T ss_dssp ECTTCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTEEE---------EEEEEEC-CCSEEEEEEE--T-TEEEEEE
T ss_pred EECCCCCCcEEEEc---CCCCEEEEEECCCCEEEEEecCCCc---------eEEEecC-CCCceEEEEe--C-CEEEEEE
Confidence 11112356889998 766555 444566889999987532 1111111 1233556542 3 3555554
Q ss_pred -CCCeEEEeeC
Q 018858 339 -TSKVVKVYSI 348 (349)
Q Consensus 339 -~dg~i~iw~~ 348 (349)
..+.|..+|.
T Consensus 226 ~~~~~v~~~d~ 236 (267)
T 1npe_A 226 WKTNSVIAMDL 236 (267)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEEeC
Confidence 5578877764
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.93 E-value=4e-07 Score=70.38 Aligned_cols=191 Identities=10% Similarity=0.059 Sum_probs=124.2
Q ss_pred CCeeeeCCc--eeeeEEEEecCCCceEEEeCCCC--cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCe
Q 018858 7 KPRRLRGHK--ATATCCIASRDRPGFVASSGEDG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKE 81 (349)
Q Consensus 7 ~~~~l~~h~--~~i~~~~~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~ 81 (349)
.++++. |. .....+.|+ + +.++.+.+.+| .|+++|+++++.+..+.... ......+.+.++.|.... .++.
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEec-CCCCcccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE
Confidence 345553 43 335788888 5 66677777665 89999999999988876543 333333333456666555 5789
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccc-ccc---eeEEEEccC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-SSI---CSSVQFIPW 157 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~---v~~~~~~~~ 157 (349)
+.++|.++.+....+.. . . ....++++++.|+.+..++.|.++|..+.+.+..+.... ..+ +..+.|.
T Consensus 109 v~v~D~~t~~~~~ti~~---~-~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-- 180 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNY---D-G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-- 180 (262)
T ss_dssp EEEEETTTCCEEEEEEC---S-S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--
T ss_pred EEEEECccCcEEEEEEC---C-C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--
Confidence 99999998655444433 1 1 112334577777776667889999999988887766111 112 2345553
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-----------CCC
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-----------TKP 226 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~ 226 (349)
++..++..-.+..|.+.|.++++........ ...
T Consensus 181 -----------------------------------~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~ 225 (262)
T 3nol_A 181 -----------------------------------DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPID 225 (262)
T ss_dssp -----------------------------------TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCC
T ss_pred -----------------------------------CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCC
Confidence 4666655557889999999998876543221 123
Q ss_pred ccceeeeeccccEEEEee
Q 018858 227 LKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~ 244 (349)
....++++|+++.+.++|
T Consensus 226 vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 226 VLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CEEEEEEETTTTEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEC
Confidence 457899999988777544
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.92 E-value=3.6e-07 Score=79.02 Aligned_cols=256 Identities=13% Similarity=0.058 Sum_probs=151.0
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeecC---------------------------------C------CCeEEEEEec---
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDVG---------------------------------N------GPVTSLCFKS--- 68 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~~---------------------------------~------~~v~~~~~~~--- 68 (349)
|.+|+..|.++|+-+.+++.+..+... . +.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 678899999999999998887765321 0 1112244444
Q ss_pred --CCCEEEEEeC-CCeEEEEEccCCCcccceeeccCcccceEEEEE-c-cCCCEEEEEc------------------CCC
Q 018858 69 --GNEDIIYVSS-GKEVKSFDVHMPASWRPLESYNYNKEEINQIVC-N-PKSSFLACAD------------------DGG 125 (349)
Q Consensus 69 --~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg 125 (349)
+|++++.... +..|.+.|+.+.+..+.+ .++. ......+++ . |+++++++++ .++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAIL-EIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEE-ECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEE-eCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 7888877665 568999999987655544 3321 245778887 5 8999998884 245
Q ss_pred cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC-
Q 018858 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG- 204 (349)
Q Consensus 126 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg- 204 (349)
.+.+.|..+.+...++. -. +....++++| +++++++.+.+.
T Consensus 176 ~vtvID~~t~~v~~qI~-Vg-g~pd~~~~sp------------------------------------dGk~~~vt~~~se 217 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVL-VS-GNLDNCDADY------------------------------------EGKWAFSTSYNSE 217 (595)
T ss_dssp EEEEEETTTTEEEEEEE-ES-SCCCCEEECS------------------------------------SSSEEEEEESCTT
T ss_pred eEEEEECCCCeEEEEEE-eC-CCccceEECC------------------------------------CCCEEEEEecCcc
Confidence 79999999998888877 22 2467788888 555555555332
Q ss_pred --------------eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE--eeeeeecCceeeee-eeeecCCCcce
Q 018858 205 --------------VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE--MEILDQSGGKRLHL-DYSVGGHTAAA 267 (349)
Q Consensus 205 --------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~h~~~i 267 (349)
.|.++|..... .+.++|++... ..-.|..... ... +..+.. ....
T Consensus 218 ~~~~i~~~~~~~~d~v~V~~~~~~~----------------~~v~~Gk~~~i~~V~VID~~~~~-~~~~~~~Ipv-g~~P 279 (595)
T 1fwx_A 218 KGMTLPEMTAAEMDHIVVFNIAEIE----------------KAIAAGDYQELNGVKVVDGRKEA-SSLFTRYIPI-ANNP 279 (595)
T ss_dssp CCSSHHHHTCCSEEEEEEEEHHHHH----------------HHHHHTCSEEETTEEEEECSGGG-CCSSEEEEEE-ESSC
T ss_pred cCcchhhccccccceEEEeecccee----------------EeccCCCeeEECcEEEEeCcccC-CceeEEEEec-CCCc
Confidence 34444443211 01112211110 0000000000 011 112221 1234
Q ss_pred EEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceec--ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEE
Q 018858 268 SCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQT--SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 268 ~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 344 (349)
.++.++ |||+++++++ .+.+|.++|+.+.+.... ......+.....-......++|++ +|...++.-.|+.|.
T Consensus 280 hGv~~s---PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 280 HGCNMA---PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVV 355 (595)
T ss_dssp CCEEEC---TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEE
T ss_pred eEEEEc---CCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECC-CCeEEEEEecCCcEE
Confidence 678899 9999887665 678999999996521000 000011222233445678889988 774344446899999
Q ss_pred EeeC
Q 018858 345 VYSI 348 (349)
Q Consensus 345 iw~~ 348 (349)
+||+
T Consensus 356 kwdi 359 (595)
T 1fwx_A 356 KWNI 359 (595)
T ss_dssp EEEH
T ss_pred EEEh
Confidence 9985
No 250
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.89 E-value=1.2e-05 Score=66.36 Aligned_cols=158 Identities=11% Similarity=0.008 Sum_probs=98.4
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEE-EEeCCCeEEEEEccCCCcccc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~ 95 (349)
....++|++.++.++++-...+.|..++.........+.........+++.+.+..|+ +-...+.|.+.++.... ...
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~ 152 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKV 152 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEE
Confidence 3578899987455666666678899999886654443333334567889987655554 44556889999987432 122
Q ss_pred eeeccCcccceEEEEEccCCCEEE-EEcCC-CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccc
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLA-CADDG-GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQC 173 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
+ ..........+++.|.+..|+ +-... +.|..+++.......... ..-.....++++|+
T Consensus 153 l--~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGla~d~~---------------- 213 (349)
T 3v64_C 153 L--LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYA---------------- 213 (349)
T ss_dssp E--ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-SSCSCEEEEEEETT----------------
T ss_pred E--EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCcceEEEeCC----------------
Confidence 2 111234578999998665554 44444 678888876432222122 22334677888873
Q ss_pred cCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 174 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
++.++++-...+.|..+|+..
T Consensus 214 -------------------~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 214 -------------------GRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp -------------------TTEEEEEETTTTEEEEEETTS
T ss_pred -------------------CCEEEEEECCCCEEEEEeCCC
Confidence 344555555678899999874
No 251
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=7.5e-06 Score=69.64 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=97.1
Q ss_pred eeeEEEEec-CCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC----C-eEEEEEccCC
Q 018858 17 TATCCIASR-DRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----K-EVKSFDVHMP 90 (349)
Q Consensus 17 ~i~~~~~~~-~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g-~i~iwd~~~~ 90 (349)
....++++| +++ .|+.+...+.|+.+|+..++..... ........+++++++++|+++... . .+...+.. +
T Consensus 138 ~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 346789997 434 4554444488999998876644333 345668899999999977666542 1 34444433 2
Q ss_pred Ccc--cceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 91 ASW--RPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 91 ~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
... ..+.. ......++++| ++.++++-..++.|..++...+................++|+|
T Consensus 215 ~~~~~~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p----------- 279 (430)
T 3tc9_A 215 GFKVITELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP----------- 279 (430)
T ss_dssp TSCSEEEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT-----------
T ss_pred ceeeeeeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC-----------
Confidence 211 12222 23467788999 6676666667788999998866542222211223467788888
Q ss_pred CCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccC
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIES 213 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 213 (349)
+++ ++++-...+.|..++...
T Consensus 280 -------------------------dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 280 -------------------------SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp -------------------------TSSEEEEEETTTTEEEEEEEET
T ss_pred -------------------------CCCEEEEEECCCCEEEEEeCCc
Confidence 787 445555778899988763
No 252
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.87 E-value=9.3e-06 Score=68.07 Aligned_cols=159 Identities=12% Similarity=0.042 Sum_probs=98.0
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE-EeCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~ 94 (349)
.....++|++.++.++++-...+.|..++.........+.........+++.+.+..|+. -...+.|.+.++.... ..
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~ 194 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RK 194 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eE
Confidence 446789999874666666667788999998866544433333345567888876555544 4556788888876432 12
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEc-CC-CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACAD-DG-GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
.+ ..........+++.|.+..|+... .. +.|..+++.......... ..-.....++++|+
T Consensus 195 ~l--~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGlavd~~--------------- 256 (386)
T 3v65_B 195 VL--LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYA--------------- 256 (386)
T ss_dssp EE--ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEEGG---------------
T ss_pred Ee--ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCeeeEEEeCC---------------
Confidence 22 112235678999998766555443 34 678888876432222222 22334577888872
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+|+..
T Consensus 257 --------------------~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 257 --------------------GRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp --------------------GTEEEEEETTTTEEEEECTTS
T ss_pred --------------------CCEEEEEECCCCEEEEEeCCC
Confidence 344555555678898888864
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.86 E-value=2.5e-06 Score=65.37 Aligned_cols=191 Identities=12% Similarity=0.053 Sum_probs=121.6
Q ss_pred CCeeeeCCc--eeeeEEEEecCCCceEEEeCCC--CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCe
Q 018858 7 KPRRLRGHK--ATATCCIASRDRPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKE 81 (349)
Q Consensus 7 ~~~~l~~h~--~~i~~~~~~~~~~~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~ 81 (349)
.++++. |. .....+.|++ +.++.+.+.+ ..|+.+|+.+++.+..+..... .........++.|... -.++.
T Consensus 11 v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCE
Confidence 445553 54 3467888885 4666666665 4899999999999888765432 2222223334555544 46889
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc-cc---cceeEEEEccC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG-HS---SICSSVQFIPW 157 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~---~~v~~~~~~~~ 157 (349)
+.++|.++.+....+.. . ..-..++ ++++.|+.+..++.|.++|..+.+.+..+... +. ..+..+.+.
T Consensus 87 v~v~D~~tl~~~~ti~~---~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-- 158 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRY---P-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-- 158 (243)
T ss_dssp EEEEETTTTEEEEEEEC---S-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--
T ss_pred EEEEECCcCcEEEEEeC---C-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--
Confidence 99999987654443332 1 2223444 56777776677889999999998887777611 11 123344443
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC------------CCC
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS------------TTK 225 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~~~ 225 (349)
++..++..-.+..|.+.|.++++......- +..
T Consensus 159 -----------------------------------~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~ 203 (243)
T 3mbr_X 159 -----------------------------------NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTN 203 (243)
T ss_dssp -----------------------------------TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTS
T ss_pred -----------------------------------CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcC
Confidence 466565555678999999999877654321 122
Q ss_pred CccceeeeeccccEEEEee
Q 018858 226 PLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~ 244 (349)
.-...++++|+++.+.++|
T Consensus 204 ~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 204 DVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp SCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEC
Confidence 3457899999888777544
No 254
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.84 E-value=2.6e-06 Score=78.01 Aligned_cols=114 Identities=12% Similarity=0.073 Sum_probs=73.7
Q ss_pred eeeEEEEe-cCCCceEEEe-CCC----CcEEEEECCCC-cEEE-EeecCCCCeEEEEEecCCCEEEEEeCC-----CeEE
Q 018858 17 TATCCIAS-RDRPGFVASS-GED----GCICWFDLRSK-DVQL-VTDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVK 83 (349)
Q Consensus 17 ~i~~~~~~-~~~~~~l~t~-~~d----g~i~vwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~ 83 (349)
.+...+|| |+ +++|+-+ ..+ ..|+++|+.++ +.+. .+.. ....++|+|+++.|+....+ ..|.
T Consensus 175 ~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 67888999 98 7776633 222 35999999988 6321 1111 12357899999988887765 3688
Q ss_pred EEEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcC---CCcEEEEEcCCc
Q 018858 84 SFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQH 135 (349)
Q Consensus 84 iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~ 135 (349)
.+++.++... ..+.... .......+.|+|++++|+.... ...|+++|+.++
T Consensus 251 ~~~lgt~~~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEETTSCGGGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEECCCCchhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 8888765321 1221111 1234567899999998876553 345888898765
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.83 E-value=6.9e-07 Score=69.08 Aligned_cols=190 Identities=11% Similarity=0.033 Sum_probs=121.8
Q ss_pred CCeeeeCCce--eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEE
Q 018858 7 KPRRLRGHKA--TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVK 83 (349)
Q Consensus 7 ~~~~l~~h~~--~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~ 83 (349)
.++++. |.. ....+.|+. +.+..+.+.+|.|+++|+++++.+..+ ... ........+.++.|... -.++.+.
T Consensus 45 Vv~~~p-hd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 45 IIREYP-HATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEE-CCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEE
T ss_pred EEEEEc-CCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEE
Confidence 344553 432 356788873 577788888899999999999987766 322 33332223345555544 4678999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc-ccc---ceeEEEEccCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG-HSS---ICSSVQFIPWKP 159 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~---~v~~~~~~~~~~ 159 (349)
++|.++.+....+.. . ..-..++ ++++.|+.+..++.|.++|..+.+.+..+... ... .+..+.|.
T Consensus 120 V~D~~Tl~~~~ti~~---~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~---- 189 (268)
T 3nok_A 120 TWSGMPPQRERTTRY---S-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA---- 189 (268)
T ss_dssp EEETTTTEEEEEEEC---S-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE----
T ss_pred EEECCcCcEEEEEeC---C-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe----
Confidence 999998654444432 1 2223344 56777777777889999999998888776611 111 23444544
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC------------CCCCc
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS------------TTKPL 227 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~~~~~ 227 (349)
+|..++..-.+..|.+.|.++++......- ....-
T Consensus 190 ---------------------------------dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v 236 (268)
T 3nok_A 190 ---------------------------------NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV 236 (268)
T ss_dssp ---------------------------------TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC
T ss_pred ---------------------------------CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc
Confidence 366565555688999999999876654321 12234
Q ss_pred cceeeeeccccEEEEee
Q 018858 228 KGSQSTSKVNIRDAEME 244 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~ 244 (349)
...++++|+++.+.++|
T Consensus 237 lNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 237 LNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEEECTTTCCEEEEE
T ss_pred eEEEEEcCCCCEEEEeC
Confidence 57899999877776544
No 256
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.81 E-value=1.5e-05 Score=67.74 Aligned_cols=266 Identities=8% Similarity=0.009 Sum_probs=138.0
Q ss_pred eeeEEEEecC-CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC----C-eEEEEEccCC
Q 018858 17 TATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----K-EVKSFDVHMP 90 (349)
Q Consensus 17 ~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g-~i~iwd~~~~ 90 (349)
.-..++++|+ +...|+.+...+.|+.+|..+++.... .........++++++++ |+.+... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 3567899983 123444444338899999887765443 33445688999999999 5444432 1 2333332211
Q ss_pred Ccc-cceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEecee-ccccccceeEEEEccCCCCCCCCCCC
Q 018858 91 ASW-RPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSL-RAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 91 ~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
... ..+.. ......++++| ++.++++-..++.|+.+|..++.....+ ..+.......++|+|
T Consensus 218 ~~~~~~~~~----~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp----------- 282 (433)
T 4hw6_A 218 FTERLSLCN----ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP----------- 282 (433)
T ss_dssp TCCEEEEEE----CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT-----------
T ss_pred eeccccccc----cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC-----------
Confidence 100 11111 23456788999 6666666667788999998866652222 211122234578877
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcE-EEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKI-CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
+++. +++-...+.|+.+++........ ....++-.+ + .
T Consensus 283 -------------------------dG~~LYvad~~~~~I~~~~~d~~~~~~~-------~~~~~ag~~-g--------~ 321 (433)
T 4hw6_A 283 -------------------------TGDWAYIIYNGKHCIYRVDYNRETGKLA-------VPYIVCGQH-S--------S 321 (433)
T ss_dssp -------------------------TSSEEEEEETTTTEEEEEEBCTTTCCBC-------CCEEEEECT-T--------C
T ss_pred -------------------------CCCEEEEEeCCCCEEEEEeCCCCCcccC-------cEEEEEecC-C--------C
Confidence 6774 44555678899988763100000 000000000 0 0
Q ss_pred eecCceeeeeeeeecCCCcceEEEEE---------eeecCCccEEEEeeCCCeEEEEecCCCcceecccccc-----eee
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAF---------SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND-----LLI 312 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~---------~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~ 312 (349)
.+.. ... .....-.....+++ . +++.++++-...+.|+.++. .+.......... ...
T Consensus 322 ~g~~--dg~---~~~a~~~~P~giav~~n~~y~~dd---~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~d 392 (433)
T 4hw6_A 322 PGWV--DGM---GTGARLWGPNQGIFVKNEAYAGEE---DEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVD 392 (433)
T ss_dssp CCCB--CEE---GGGSBCSSEEEEEEEECGGGTTSS---CCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBC
T ss_pred CccC--CCc---ccceEEcCCccEEEEccccccccC---CCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCC
Confidence 0000 000 00011124567888 5 67777777777889999985 332110000000 000
Q ss_pred ---eccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 313 ---KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 313 ---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.....-.....|++.|.++.++++=...+.|+..+++
T Consensus 393 G~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 393 GELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 0000112467899986577555544567888887753
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.81 E-value=8.6e-07 Score=79.86 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=97.6
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCC----CCeEE-EEEecCCCEEEEEeC------CCeEEEEEccCCCccccee
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGN----GPVTS-LCFKSGNEDIIYVSS------GKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~ 97 (349)
..++.++.|+.|..+|..+++.+..+.... ..+.+ ..+ .+..++++.. +|.|..+|.++++......
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 467778889999999999999988876521 11111 111 1334555542 5899999999887554443
Q ss_pred eccCc----------------------------ccceEEEEEccCCCEEEEEcCCC-------------------cEEEE
Q 018858 98 SYNYN----------------------------KEEINQIVCNPKSSFLACADDGG-------------------DVKII 130 (349)
Q Consensus 98 ~~~~~----------------------------~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~i~ 130 (349)
..... ......+++.|+...++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 21100 00112467888888888887765 39999
Q ss_pred EcCCceEeceeccc-cc-------cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc---EEEE
Q 018858 131 DIRQHCLYKSLRAG-HS-------SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK---ICVV 199 (349)
Q Consensus 131 d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~ 199 (349)
|.++++.+..++.. |. .+.....+.. +++ .++.
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~------------------------------------~G~~~~~v~~ 319 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI------------------------------------DGKPRKVLMQ 319 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE------------------------------------TTEEEEEEEE
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEecc------------------------------------CCcEEEEEEE
Confidence 99999988877621 11 0111111111 343 6889
Q ss_pred EcCCCeEEEEEccCceeeee
Q 018858 200 AKGDGVVDVINIESELNISR 219 (349)
Q Consensus 200 ~~~dg~i~i~d~~~~~~~~~ 219 (349)
++.+|.++++|.++++.+..
T Consensus 320 ~~~~G~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 320 APKNGFFYVLDRTNGKLISA 339 (668)
T ss_dssp CCTTSEEEEEETTTCCEEEE
T ss_pred ECCCCEEEEEECCCCCEecc
Confidence 99999999999999876643
No 258
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.77 E-value=0.00012 Score=67.77 Aligned_cols=272 Identities=10% Similarity=0.006 Sum_probs=155.2
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEe-ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
|.++...++ +.+.+ +..++.|..|+..+++..... ......|.++...+++. |..++.++-|..||..+++. ...
T Consensus 175 i~~i~~d~~-g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~-~~~ 250 (795)
T 4a2l_A 175 IASTLYRQG-DQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEI-KNY 250 (795)
T ss_dssp CEEEEEEET-TEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEE-EEE
T ss_pred eEEEEECCC-CCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeE-EEe
Confidence 788888776 55444 555555899998776643321 12345788888877776 44555444488899875422 111
Q ss_pred eec-----cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec------cccccceeEEEEccCCCCCCCCC
Q 018858 97 ESY-----NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR------AGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 97 ~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
... ......|.++...+++.+.+ |+.+ -|.+||..+++...... ......|.++...+
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~--------- 319 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS--------- 319 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT---------
T ss_pred ecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC---------
Confidence 110 01235688998888776444 5555 58899987765432211 01224567776665
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC-----CCCCCccceeeeeccccEE
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK-----STTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 240 (349)
+|. |-+|+.++-|..|+........... ......+.++...++|...
T Consensus 320 ---------------------------~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW 371 (795)
T 4a2l_A 320 ---------------------------QGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW 371 (795)
T ss_dssp ---------------------------TSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE
T ss_pred ---------------------------CcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE
Confidence 565 5567777778899877654322211 1124457788888888877
Q ss_pred EEee--eeeecCce--eeeeeeee------cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccce
Q 018858 241 AEME--ILDQSGGK--RLHLDYSV------GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 241 ~~~~--~~~~~~~~--~~~~~~~~------~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
+... ........ .......- .-....|.++... ++++.|..|+.++-|..||..+++.
T Consensus 372 iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d---~~g~~lWigt~~~Gl~~~d~~~~~~--------- 439 (795)
T 4a2l_A 372 IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD---EKKSLVYIGTHAGGLSILHRNSGQV--------- 439 (795)
T ss_dssp EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE---TTTTEEEEEETTTEEEEEETTTCCE---------
T ss_pred EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc---CCCCEEEEEeCcCceeEEeCCCCcE---------
Confidence 6421 11111111 11111100 0113568899888 7887566677777799999887532
Q ss_pred eeecc----ccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 311 LIKNI----NLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 311 ~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..... .....|.++...+ ++. |..++.+| +.+|+
T Consensus 440 ~~~~~~~~~l~~~~v~~i~~d~-~g~-lwigt~~G-l~~~~ 477 (795)
T 4a2l_A 440 ENFNQRNSQLVNENVYAILPDG-EGN-LWLGTLSA-LVRFN 477 (795)
T ss_dssp EEECTTTSCCSCSCEEEEEECS-SSC-EEEEESSC-EEEEE
T ss_pred EEeecCCCCcCCCeeEEEEECC-CCC-EEEEecCc-eeEEe
Confidence 11111 2345688887755 554 44455544 66665
No 259
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.76 E-value=5.6e-05 Score=63.61 Aligned_cols=162 Identities=13% Similarity=0.060 Sum_probs=98.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----cEEEEeecCCCCeEEEEEecCCCEEE-EEeCCCeEEEEEc
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDV 87 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~ 87 (349)
.....+..++|++.++.++++-...+.|+.+++... .....+.........+++.+.+..|+ +-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 344567889999874556666566788999988752 22333333445678899998555554 4456788999888
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
+... ...+.. ........+++.|.+.+|+... ..+.|...++.......... ..-.....++++++
T Consensus 189 ~g~~-~~~l~~--~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glavd~~-------- 256 (400)
T 3p5b_L 189 KGVK-RKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLL-------- 256 (400)
T ss_dssp TTCS-EEEEEE--CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC-SSCSCEEEEEEETT--------
T ss_pred CCCc-eEEEEe--CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE-CCCCceEEEEEEeC--------
Confidence 7432 222211 1234578999999766655443 24678888876433222222 22345677888872
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+|+..
T Consensus 257 ---------------------------~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 257 ---------------------------SGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp ---------------------------TTEEEEEETTTTEEEEEETTS
T ss_pred ---------------------------CCEEEEEECCCCEEEEEeCCC
Confidence 344444445677899999875
No 260
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.73 E-value=0.00015 Score=66.97 Aligned_cols=236 Identities=8% Similarity=0.063 Sum_probs=139.6
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec--------CCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV--------GNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
...|.++...++ +. |..|+.++-|..|+..+++....... ....|.++...++++.|..|+.++-|..+|
T Consensus 356 ~~~V~~i~~d~~-g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 356 DNVVSCIVEDKD-KN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp CSSEEEEEECTT-SC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCeeEEEEECCC-CC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 345888888776 44 66677777799999887664332211 235688998888887577788777799999
Q ss_pred ccCCCcccceeec--cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc-----ccccceeEEEEccCCC
Q 018858 87 VHMPASWRPLESY--NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-----GHSSICSSVQFIPWKP 159 (349)
Q Consensus 87 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~ 159 (349)
.++++. ..+... ......|.++...+++.+.+. +.+ -+.+||..+++....... .....|.++...+
T Consensus 434 ~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--- 507 (795)
T 4a2l_A 434 RNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS--- 507 (795)
T ss_dssp TTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT---
T ss_pred CCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECC---
Confidence 886532 111110 012356888888887765554 444 588999877654322210 1124566666665
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec-----CCCCCCccceeeee
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-----KSTTKPLKGSQSTS 234 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~ 234 (349)
++++.+ |+. +-|..||..+.+. ... .......+.++...
T Consensus 508 ---------------------------------~g~lWi-gt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d 551 (795)
T 4a2l_A 508 ---------------------------------HKRLWI-GGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEA 551 (795)
T ss_dssp ---------------------------------TCCEEE-EES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEEC
T ss_pred ---------------------------------CCCEEE-EeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEEC
Confidence 566554 444 4588899877654 211 11223456778888
Q ss_pred ccccEEEEeee-eeecCc--eeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 235 KVNIRDAEMEI-LDQSGG--KRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 235 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
++|...+.... ...... ..........+ ....|.++..+ ++|++.+++ . +-|..|+..+.
T Consensus 552 ~~g~lWigT~~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d---~~g~lWi~t-~-~Gl~~~~~~~~ 615 (795)
T 4a2l_A 552 SNGIIWVGTREGFYCFNEKDKQIKRYNTTNGLPNNVVYGILED---SFGRLWLST-N-RGISCFNPETE 615 (795)
T ss_dssp TTSCEEEEESSCEEEEETTTTEEEEECGGGTCSCSCEEEEEEC---TTSCEEEEE-T-TEEEEEETTTT
T ss_pred CCCCEEEEeCCCceeECCCCCcEEEeCCCCCCchhheEEEEEC---CCCCEEEEc-C-CceEEEcCCCC
Confidence 88887664321 111110 11111111112 13468888887 778766655 3 45778888764
No 261
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.72 E-value=5.7e-05 Score=61.42 Aligned_cols=159 Identities=14% Similarity=0.051 Sum_probs=95.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCC----CcEEEEeecCCCCeEEEEEecCCCEEEE-EeCCCeEEEEEccCC
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRS----KDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMP 90 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~ 90 (349)
....+++|++.++.++++-..++.|..+++.. ......+...-.....+++.+.+..|+. -...+.|.+.++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 34568999987456666666678999999875 2222223322245678999875555544 456789999998743
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcC-C-CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADD-G-GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
. ...+.. ........+++.|.+..|+.... . +.|..+++... ....+....-.....++++|+
T Consensus 110 ~-~~~~~~--~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~----------- 174 (316)
T 1ijq_A 110 K-RKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLL----------- 174 (316)
T ss_dssp S-EEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETT-----------
T ss_pred c-eEEEEE--CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEecc-----------
Confidence 2 222221 12246789999986665544433 2 67888887533 222222022334667888872
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+|+..
T Consensus 175 ------------------------~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 175 ------------------------SGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp ------------------------TTEEEEEETTTTEEEEEETTS
T ss_pred ------------------------CCEEEEEECCCCeEEEEecCC
Confidence 344445555677999999874
No 262
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.69 E-value=4.8e-05 Score=59.16 Aligned_cols=215 Identities=8% Similarity=0.103 Sum_probs=125.8
Q ss_pred EeecCCCCeEEEEEecCCCEEEE-EeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEE
Q 018858 53 VTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID 131 (349)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 131 (349)
.+.+-...+..++|+|+++.|++ ...++.|...|.. ++..+.+. +.+ ......+++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-LDF-VKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-CSS-CSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-cCC-CCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 44455567999999998776665 5667889888987 54333332 121 24577888888888777766778899998
Q ss_pred cCCceE---eceec-----cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC
Q 018858 132 IRQHCL---YKSLR-----AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 203 (349)
Q Consensus 132 ~~~~~~---~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 203 (349)
+..... +.... ...+.....++|+| .++.|.++...
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~------------------------------------~~~~L~va~E~ 141 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR------------------------------------QDHTFWFFKEK 141 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET------------------------------------TTTEEEEEEES
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeC------------------------------------CCCEEEEEECc
Confidence 764332 12221 01234456777777 56566666655
Q ss_pred CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEE
Q 018858 204 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI 283 (349)
Q Consensus 204 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~ 283 (349)
....+|.++... . .. .+....+ ... .-..+...+.+++++| ..+.+++
T Consensus 142 ~p~~i~~~~g~~-----~----~~--~l~i~~~-----------------~~~--~~~~~~~d~S~l~~dp--~tg~lli 189 (255)
T 3qqz_A 142 NPIEVYKVNGLL-----S----SN--ELHISKD-----------------KAL--QRQFTLDDVSGAEFNQ--QKNTLLV 189 (255)
T ss_dssp SSEEEEEEESTT-----C----SS--CCEEEEC-----------------HHH--HHTCCSSCCCEEEEET--TTTEEEE
T ss_pred CCceEEEEcccc-----c----CC--ceeeecc-----------------hhh--ccccccCCceeEEEcC--CCCeEEE
Confidence 555566554200 0 00 0000000 000 0011234578999996 5667777
Q ss_pred EeeCCCeEEEEecCCCcceecccccceeeecccc------ccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 284 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL------NKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 284 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.....+.|.++|.... .. ..+....+. -.....|++.+ +|+ |+.+++-+.++.+.
T Consensus 190 LS~~s~~L~~~d~~g~-~~------~~~~L~~g~~~l~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 190 LSHESRALQEVTLVGE-VI------GEMSLTKGSRGLSHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp EETTTTEEEEECTTCC-EE------EEEECSTTGGGCSSCCCSEEEEEECT-TCC-EEEEETTTEEEEEE
T ss_pred EECCCCeEEEEcCCCC-EE------EEEEcCCccCCcccccCCCCeeEECC-CCC-EEEEcCCceEEEEE
Confidence 7788899999998764 11 111112121 12567899988 775 66667777776664
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.68 E-value=0.0001 Score=61.78 Aligned_cols=114 Identities=7% Similarity=-0.000 Sum_probs=69.2
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS 116 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 116 (349)
..|+..++........+. ....+..++|.+.+..|+.+ ...+.|..+++.... ...+ ..........+++.+.+.
T Consensus 96 ~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~--~~~~~~~p~glavd~~~g 171 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEV--VSTGLESPGGLAVDWVHD 171 (386)
T ss_dssp SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEE--ECSSCSCCCCEEEETTTT
T ss_pred ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEE--EeCCCCCccEEEEEeCCC
Confidence 568888887665544444 34557899999866666555 456889999987542 1121 111123456788887554
Q ss_pred -EEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 117 -FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 117 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
++++-...+.|.+.++........+. ........+++.|
T Consensus 172 ~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp 211 (386)
T 3v65_B 172 KLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHP 211 (386)
T ss_dssp EEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEET
T ss_pred eEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEc
Confidence 44555566788888876443222222 2334567788877
No 264
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.68 E-value=1.6e-05 Score=70.20 Aligned_cols=157 Identities=11% Similarity=0.103 Sum_probs=93.2
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCC----CeEE-EEEecCCCEEEEEeC------CCeEEEEEccCCCcccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNG----PVTS-LCFKSGNEDIIYVSS------GKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~ 96 (349)
+..++.++.|+.|..+|..+++.+........ .+.+ ... .+..+++++. ++.|..+|.++++.....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 34677788899999999999999887653220 1111 111 1345666654 789999999988654433
Q ss_pred eeccCc----------------------------------cc-ceEEEEEccCCCEEEEEcCC----------------C
Q 018858 97 ESYNYN----------------------------------KE-EINQIVCNPKSSFLACADDG----------------G 125 (349)
Q Consensus 97 ~~~~~~----------------------------------~~-~v~~~~~~~~~~~l~~~~~d----------------g 125 (349)
...... .. ....+++.++...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 321100 00 00135566666666666532 2
Q ss_pred cEEEEEcCCceEeceecccc-cc----ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC---cEE
Q 018858 126 DVKIIDIRQHCLYKSLRAGH-SS----ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KIC 197 (349)
Q Consensus 126 ~i~i~d~~~~~~~~~~~~~~-~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l 197 (349)
.|..+|.++++.+..++..+ .. .+....+.. ... ++ +.+
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~---------------------------~~~------~G~~~~~v 319 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTD---------------------------QPV------NGKMTPLL 319 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEE---------------------------EEE------TTEEEEEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEe---------------------------ccc------CCcEEEEE
Confidence 59999999999887766211 10 011111100 000 45 357
Q ss_pred EEEcCCCeEEEEEccCceeeee
Q 018858 198 VVAKGDGVVDVINIESELNISR 219 (349)
Q Consensus 198 ~~~~~dg~i~i~d~~~~~~~~~ 219 (349)
+.++.+|.+.++|.++++.+..
T Consensus 320 ~~~~~~G~l~~lD~~tG~~~w~ 341 (571)
T 2ad6_A 320 SHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEE
T ss_pred EEeCCCcEEEEEECCCCCEEee
Confidence 7888999999999998876543
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=0.00015 Score=66.93 Aligned_cols=278 Identities=10% Similarity=-0.007 Sum_probs=153.0
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee--------------cCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--------------VGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
..|.++...++ +. |..|+..+-|.++|..+++...... .....|.++...++|. |..|+.++-
T Consensus 258 ~~i~~i~~d~~-g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 258 SYIFSIKQLKD-NK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCEEEEEECTT-SE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred ceEEEEEECCC-CC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45888887776 44 5555554568889987665322111 1345788998888776 667776777
Q ss_pred EEEEEccCCCcccceee-------ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec--cccccceeEE
Q 018858 82 VKSFDVHMPASWRPLES-------YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSV 152 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~ 152 (349)
|..++....... .+.. .......|.++...+++. |..|+.++-|..||..++....... ......|.++
T Consensus 335 l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcce-eeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 888887654321 1110 011235688888877765 5556666669999977554322111 0123456666
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC-CCCCCcccee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK-STTKPLKGSQ 231 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~ 231 (349)
...+ ++. |.+|+.++.|..++.++++...... ......+.++
T Consensus 413 ~~d~------------------------------------~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i 455 (781)
T 3v9f_A 413 LKDS------------------------------------EGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVF 455 (781)
T ss_dssp EECT------------------------------------TSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEE
T ss_pred EECC------------------------------------CCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEE
Confidence 6655 555 4457766778899987665443322 2234567788
Q ss_pred eeeccccEEEEeee-eeecCce--eeeeeeeec---CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecc
Q 018858 232 STSKVNIRDAEMEI-LDQSGGK--RLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~---~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 305 (349)
...++|...+.... ....... ......... .....|.++... ++|++.+. +.++-|..||..+....
T Consensus 456 ~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d---~~g~lWig-t~~~Gl~~~~~~~~~~~--- 528 (781)
T 3v9f_A 456 YEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD---SEGRFWIG-TFGGGVGIYTPDMQLVR--- 528 (781)
T ss_dssp EECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC---TTCCEEEE-ESSSCEEEECTTCCEEE---
T ss_pred EECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEc---CCCCEEEE-EcCCCEEEEeCCCCeEE---
Confidence 88888887764321 0000000 111111111 113568888887 77776554 44334777887764211
Q ss_pred cccceeeeccc-cccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 306 INNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 306 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
......+ ....|.++...+ ++. |..++.+|.+..||.
T Consensus 529 ----~~~~~~~l~~~~i~~i~~d~-~g~-lWi~T~~Glv~~~d~ 566 (781)
T 3v9f_A 529 ----KFNQYEGFCSNTINQIYRSS-KGQ-MWLATGEGLVCFPSA 566 (781)
T ss_dssp ----EECTTTTCSCSCEEEEEECT-TSC-EEEEETTEEEEESCT
T ss_pred ----EccCCCCCCCCeeEEEEECC-CCC-EEEEECCCceEEECC
Confidence 0000111 234677877755 554 555555665466653
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.64 E-value=0.00012 Score=60.44 Aligned_cols=132 Identities=8% Similarity=0.049 Sum_probs=78.2
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcccc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 95 (349)
..+|.+..++ +.++++ . ...|+..++........+. ....+..++|++....|+.+. ..+.|..+++..... ..
T Consensus 35 ~~~C~~~~~~-~~ll~~-~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~ 109 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFA-N-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EE 109 (349)
T ss_dssp SSCEEESSSC-CEEEEE-C-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred CCcccccccC-ceeEee-c-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eE
Confidence 3456555553 333433 3 3458888887655444443 334578999998766666554 568899999875432 22
Q ss_pred eeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 96 LESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+ ..........+++.+.+ ..+++-...+.|.+.++........+. ........+++.|
T Consensus 110 ~--~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp 168 (349)
T 3v64_C 110 V--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHP 168 (349)
T ss_dssp E--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEET
T ss_pred E--EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEec
Confidence 1 11112345788898755 444555667789999987543222222 2334567788887
No 267
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.57 E-value=8.7e-06 Score=73.37 Aligned_cols=183 Identities=6% Similarity=-0.001 Sum_probs=116.5
Q ss_pred EEEEecCCCceEEEeCCCC-------------------cEEEEECCCCcEEEEeec--CC-------CCeEEEEEecCCC
Q 018858 20 CCIASRDRPGFVASSGEDG-------------------CICWFDLRSKDVQLVTDV--GN-------GPVTSLCFKSGNE 71 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg-------------------~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~ 71 (349)
.+++.|+ ..+++.+..++ .|..+|..+++.+..++. |. .+.....+..+|+
T Consensus 234 ~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 4678887 56777777665 399999999999888764 22 2333333334665
Q ss_pred ---EEEEEeCCCeEEEEEccCCCcccceeecc--------C-ccc------------------------ceEEEEEccCC
Q 018858 72 ---DIIYVSSGKEVKSFDVHMPASWRPLESYN--------Y-NKE------------------------EINQIVCNPKS 115 (349)
Q Consensus 72 ---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~-~~~------------------------~v~~~~~~~~~ 115 (349)
.++.++.+|.++++|.++++.+....... . ... .-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 68888999999999999886542211100 0 000 00125677766
Q ss_pred CEEEEE------------------------------------cCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 116 SFLACA------------------------------------DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 116 ~~l~~~------------------------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
..++.. ..+|.|..||+.+++.+.+.+ . ........+..
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~-~-~~~~~~~~~~t--- 467 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP-Y-PTHWNGGTLST--- 467 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE-E-SSSCCCCEEEE---
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc-C-CCCCcCceeEe---
Confidence 655431 123778899999988877766 2 22222222222
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
.+.++++++.||.++.||.++++.+............-+.+..+|+.
T Consensus 468 ---------------------------------~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~ 514 (668)
T 1kv9_A 468 ---------------------------------AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (668)
T ss_dssp ---------------------------------TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ---------------------------------CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence 56788889999999999999988777665554333345566667764
Q ss_pred EE
Q 018858 240 DA 241 (349)
Q Consensus 240 ~~ 241 (349)
.+
T Consensus 515 yv 516 (668)
T 1kv9_A 515 YV 516 (668)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 268
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.54 E-value=0.00039 Score=63.51 Aligned_cols=161 Identities=13% Similarity=0.082 Sum_probs=98.7
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----cEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEcc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVH 88 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 88 (349)
....+..++|.+.++.++++-...+.|+.+++... .....+.........|++.+.++.|+.+ ...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 34556789999864566666666788999988753 2233333344556789999877666555 456899999987
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEc-C-CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-D-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
... ...+.. ........|++.|...+|+... . .+.|...++........+. ..-.....|++.+.
T Consensus 502 G~~-~~~l~~--~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~~l~~P~GLavD~~--------- 568 (791)
T 3m0c_C 502 GVK-RKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLL--------- 568 (791)
T ss_dssp SSS-EEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETT---------
T ss_pred CCe-EEEEEe--CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-CCCCCceEEEEecC---------
Confidence 432 222221 1224578999999765555443 2 2678888886443322222 23345677888762
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+++..
T Consensus 569 --------------------------~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 569 --------------------------SGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp --------------------------TTEEEEEETTTTEEEEEETTS
T ss_pred --------------------------CCeEEEEeCCCCcEEEEecCC
Confidence 344444445667888888875
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.53 E-value=0.00018 Score=58.22 Aligned_cols=84 Identities=7% Similarity=0.002 Sum_probs=54.5
Q ss_pred cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC--c
Q 018858 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG--D 126 (349)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~ 126 (349)
+.+..+... .....++|+++++.+++-..++.|..||.... . ...... ...+..+++.++++++++..... .
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~-~~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q-QIHATV---EGKVSGLAFTSNGDLVATGWNADSIP 96 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-E-EEEEEC---SSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-e-EEEEeC---CCCceeEEEcCCCcEEEEeccCCcce
Confidence 344455432 45788999999986666667889999987642 1 111111 24688999999998666554322 4
Q ss_pred EEEEEcCCceEe
Q 018858 127 VKIIDIRQHCLY 138 (349)
Q Consensus 127 i~i~d~~~~~~~ 138 (349)
|..+|..+++..
T Consensus 97 v~~~d~~~g~~~ 108 (306)
T 2p4o_A 97 VVSLVKSDGTVE 108 (306)
T ss_dssp EEEEECTTSCEE
T ss_pred EEEEcCCCCeEE
Confidence 777777776643
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.52 E-value=5.8e-05 Score=61.59 Aligned_cols=112 Identities=6% Similarity=-0.131 Sum_probs=69.6
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-----CCCCeEEEEEec-CCCEEEEEeC------------
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-----GNGPVTSLCFKS-GNEDIIYVSS------------ 78 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~------------ 78 (349)
....+++.+++++++++.. .+.|..+|..+++.. .+.. .......+++.+ +|+..++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~-~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDC-YYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTEEEEEET-TTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCcEEEEEC-CCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 4678899973255554433 345888887655321 2211 113467899999 8876665432
Q ss_pred -----CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEE-cCCCcEEEEEcCC
Q 018858 79 -----GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA-DDGGDVKIIDIRQ 134 (349)
Q Consensus 79 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~ 134 (349)
++.|..+|..+++.......+ .....++++|+++.|+.+ ...+.|.+|++..
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~~----~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKEL----HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEEE----SCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred cccCCCceEEEEeCCCCEEEEeccCC----ccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 367888887654321111221 345679999999866554 5668899999874
No 271
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.52 E-value=4.9e-05 Score=67.23 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=72.5
Q ss_pred eEEEeC------CCCcEEEEECCCCcEEEEeecCCCCe-----------------------------------------E
Q 018858 30 FVASSG------EDGCICWFDLRSKDVQLVTDVGNGPV-----------------------------------------T 62 (349)
Q Consensus 30 ~l~t~~------~dg~i~vwd~~~~~~~~~~~~~~~~v-----------------------------------------~ 62 (349)
.++.++ .+|.|+.+|..+++.+.........+ .
T Consensus 170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~ 249 (582)
T 1flg_A 170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ 249 (582)
T ss_dssp EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS
T ss_pred EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccC
Confidence 565554 37899999999999887664321100 1
Q ss_pred EEEEecCCCEEEEEeC--------------------C----CeEEEEEccCCCcccceeeccCcc-------cceEEEEE
Q 018858 63 SLCFKSGNEDIIYVSS--------------------G----KEVKSFDVHMPASWRPLESYNYNK-------EEINQIVC 111 (349)
Q Consensus 63 ~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~ 111 (349)
.+++.|....++.+.. | +.|.-+|.++++.....+.. .|. ....-+..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~-~~d~wd~~~~~~p~l~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT-PNDAWDFSGNNELVLFDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS-TTCCSCCCCCCCCEEEEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC-CCCcccccCCCCcEEEee
Confidence 2456666677776653 2 58999999988755443321 111 11111222
Q ss_pred c-cCC---CEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 112 N-PKS---SFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 112 ~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
. .++ ..++.++.+|.++++|.++++.+..++
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 1 356 377889999999999999999987766
No 272
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.50 E-value=8e-05 Score=65.85 Aligned_cols=158 Identities=9% Similarity=0.028 Sum_probs=93.6
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeecCCC----CeEE-EEEecCCCEEEEEe------CCCeEEEEEccCCCcccceeec
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDVGNG----PVTS-LCFKSGNEDIIYVS------SGKEVKSFDVHMPASWRPLESY 99 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 99 (349)
|+.++.|+.|..+|..+++.+........ .+.+ ..+. ++ .+++++ .++.|.-+|.++++........
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 77788899999999999999877654320 1111 1111 33 455554 3789999999988654333221
Q ss_pred cCc----------------------------------ccce-EEEEEccCCCEEEEEcCC----------------CcEE
Q 018858 100 NYN----------------------------------KEEI-NQIVCNPKSSFLACADDG----------------GDVK 128 (349)
Q Consensus 100 ~~~----------------------------------~~~v-~~~~~~~~~~~l~~~~~d----------------g~i~ 128 (349)
... ...+ ..+++.++...++.+..+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 100 0001 134566677777777655 3799
Q ss_pred EEEcCCceEeceeccccccceeEEEE--ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC---cEEEEEcCC
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQF--IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KICVVAKGD 203 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~d 203 (349)
.+|.++++.+..++ ........... .| .+ .... +.++ ..++.++.+
T Consensus 282 Ald~~TG~~~W~~q-~~~~d~wd~d~~~~p---------------------~l--~d~~-----~~~G~~~~~v~~~~~~ 332 (599)
T 1w6s_A 282 GRDADTGEAKFGYQ-KTPHDEWDYAGVNVM---------------------ML--SEQK-----DKDGKARKLLTHPDRN 332 (599)
T ss_dssp EEETTTCCEEEEEE-SSTTCSSCCCCCCCC---------------------EE--EEEE-----CTTSCEEEEEEEECTT
T ss_pred EEeCCCCceeeEee-cCCCccccccCCCcc---------------------EE--Eecc-----ccCCcEEEEEEEECCC
Confidence 99999999887776 22111110000 00 00 0000 0145 567778899
Q ss_pred CeEEEEEccCceeeee
Q 018858 204 GVVDVINIESELNISR 219 (349)
Q Consensus 204 g~i~i~d~~~~~~~~~ 219 (349)
|.+.++|.++++.+..
T Consensus 333 G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 333 GIVYTLDRTDGALVSA 348 (599)
T ss_dssp SEEEEEETTTCCEEEE
T ss_pred cEEEEEECCCCCEeec
Confidence 9999999998876553
No 273
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.50 E-value=0.0002 Score=58.00 Aligned_cols=143 Identities=8% Similarity=0.128 Sum_probs=92.3
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecC----CCE--EEEEe-C---CCeEEEEEcc--CCCcccc
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG----NED--IIYVS-S---GKEVKSFDVH--MPASWRP 95 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~~~~-~---dg~i~iwd~~--~~~~~~~ 95 (349)
..+++.....+-+.+||+ +++.++.+.. +.+..+..-|. ++. ++.++ . +++|.+|++. +++ ...
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 345666666788999999 7888888764 56777776652 322 33333 3 4789999874 221 222
Q ss_pred eeec--c--CcccceEEEEE--ccC-CC-EEEEEcCCCcEEEEEcC-------CceEeceeccccccceeEEEEccCCCC
Q 018858 96 LESY--N--YNKEEINQIVC--NPK-SS-FLACADDGGDVKIIDIR-------QHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 96 ~~~~--~--~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+... + .....+..+++ +|. +. ++++...+|.+..|++. +.+.++++. ..+.+..+...+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd---- 189 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADD---- 189 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEET----
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcC----
Confidence 2111 1 11145666777 664 43 57778888999999883 345667776 345677888877
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
....|+++-++.-|..|+.+
T Consensus 190 --------------------------------~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 190 --------------------------------EYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp --------------------------------TTTEEEEEETTTEEEEEECS
T ss_pred --------------------------------CCCeEEEecccceEEEEeCC
Confidence 67788888888766666654
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.49 E-value=2.1e-05 Score=70.87 Aligned_cols=115 Identities=8% Similarity=0.048 Sum_probs=73.3
Q ss_pred EEEEecCCCceEEEeCCCC-----------cEEEEECCCCcE--EEEeec-CCCCeEEEEEecCCCEEEEEeC-CCeEEE
Q 018858 20 CCIASRDRPGFVASSGEDG-----------CICWFDLRSKDV--QLVTDV-GNGPVTSLCFKSGNEDIIYVSS-GKEVKS 84 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg-----------~i~vwd~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 84 (349)
+.++.+.++++++.|+.+. .+.+||..+++. +..+.. +.....++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 4567773378888876542 588999887653 223322 3333445677889999999884 458999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEc-CC-----CcEEEEEcCCce
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DG-----GDVKIIDIRQHC 136 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~ 136 (349)
||..+.+ ...+..+... ..-..++..++++.++.|+ .+ ..+.+||..+++
T Consensus 270 yd~~t~~-W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDS-WIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTE-EEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCc-eeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 9988653 2222222211 1223455567889999988 34 468999987664
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.48 E-value=0.00029 Score=57.17 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=97.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEEecCCCEEE-EEeCCCeEEEEEccCCCcc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~ 93 (349)
....+++|.+.++.++++-...+.|..++...... ...+...-.....+++.+.+..|+ +-...+.|.++++.... .
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~ 113 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-R 113 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-E
Confidence 45678899986466666666778899999876532 122222334567888987555554 44556889999987432 2
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
..+. .........+++.|.+..|+... ..+.|..+++.......... ..-.....++++|+
T Consensus 114 ~~l~--~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~l~~Pnglavd~~-------------- 176 (318)
T 3sov_A 114 KVLF--WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYE-------------- 176 (318)
T ss_dssp EEEE--CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEETT--------------
T ss_pred EEEE--eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-CCCCCccEEEEecc--------------
Confidence 2221 12235578999998766655544 35778888876332211122 22234567888873
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+|+..
T Consensus 177 ---------------------~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 177 ---------------------EQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp ---------------------TTEEEEEETTTTEEEEEETTS
T ss_pred ---------------------CCEEEEEECCCCEEEEEcCCC
Confidence 344445555678899999874
No 276
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=0.00089 Score=61.74 Aligned_cols=274 Identities=11% Similarity=0.043 Sum_probs=148.9
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-------cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-------VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
..|.++...++ +.+.+ |+.+ -|.+||..+++...... .....|.++...++|. |..|+..+-|.++|..
T Consensus 211 ~~i~~i~~d~~-g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDTN-GNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECTT-CCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred CceeEEEEcCC-CCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence 45888877776 55444 4444 58999987665422111 1245688888877775 5566664568889887
Q ss_pred CCCccccee-------e----ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec---------cccccc
Q 018858 89 MPASWRPLE-------S----YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR---------AGHSSI 148 (349)
Q Consensus 89 ~~~~~~~~~-------~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~~ 148 (349)
+........ . .......|.++...+++. |..|+.++-|..++........ +. ......
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 364 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKV 364 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSC
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccCccccccCCCCCcc
Confidence 643211111 0 011235688888887775 5567766778888876543211 11 012234
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC--CCCCC
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK--STTKP 226 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~ 226 (349)
|.++...+ ++. |.+|+.++-|..||..+........ .....
T Consensus 365 v~~i~~d~------------------------------------~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 407 (781)
T 3v9f_A 365 VSSVCDDG------------------------------------QGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSN 407 (781)
T ss_dssp EEEEEECT------------------------------------TSC-EEEEEBSSCEEEEETTEEEEECC-----CCCS
T ss_pred eEEEEEcC------------------------------------CCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCc
Confidence 66666655 555 5566766668899987654332211 12235
Q ss_pred ccceeeeeccccEEEEee--eeeecCceeeeeeeeec---CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 227 LKGSQSTSKVNIRDAEME--ILDQSGGKRLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
.+.++...++|...+... ........... ...+. .....|.++... +++.+.+ |+. +-|..||..+++-
T Consensus 408 ~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d---~~g~lwi-gt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 408 SVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-FQIIELEKNELLDVRVFYED---KNKKIWI-GTH-AGVFVIDLASKKV 481 (781)
T ss_dssp BEEEEEECTTSCEEEEETTEEEEEECSSSCE-EEECCSTTTCCCCEEEEEEC---TTSEEEE-EET-TEEEEEESSSSSC
T ss_pred ceEEEEECCCCCEEEEeccCCEEEEcCCCCc-EEEeccCCCCCCeEEEEEEC---CCCCEEE-EEC-CceEEEeCCCCeE
Confidence 567777777887776431 11111111111 11111 124578888877 6776554 444 4588899877532
Q ss_pred eecccccceeeecc---ccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 302 VQTSINNDLLIKNI---NLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 302 ~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
. ...... .....|.+++..+ ++. |..++.++-+..|+
T Consensus 482 ~-------~~~~~~~~~~~~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 482 I-------HHYDTSNSQLLENFVRSIAQDS-EGR-FWIGTFGGGVGIYT 521 (781)
T ss_dssp C-------EEECTTTSSCSCSCEEEEEECT-TCC-EEEEESSSCEEEEC
T ss_pred E-------ecccCcccccccceeEEEEEcC-CCC-EEEEEcCCCEEEEe
Confidence 1 110000 1135688887765 554 55555533355554
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.45 E-value=4.7e-05 Score=69.74 Aligned_cols=92 Identities=8% Similarity=0.000 Sum_probs=57.3
Q ss_pred CeEEEEEe-cCCCEEEEEeC-CC----eEEEEEccCC-CcccceeeccCcccceEEEEEccCCCEEEEEcCC-----CcE
Q 018858 60 PVTSLCFK-SGNEDIIYVSS-GK----EVKSFDVHMP-ASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDV 127 (349)
Q Consensus 60 ~v~~~~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i 127 (349)
.+...+|| |+|++|+.+.. +| .|+++|+.++ +... ..+ ......++|+||++.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCE---EEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccc---cCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 57789999 99999886643 22 5999999987 4211 111 1223568899999888776654 257
Q ss_pred EEEEcCCceE--eceeccccccceeEEEEcc
Q 018858 128 KIIDIRQHCL--YKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 128 ~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~ 156 (349)
+++++.++.. ...+..........+.|+|
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp 280 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA 280 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECT
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECC
Confidence 8888876532 1222201222345677888
No 278
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.45 E-value=4.3e-05 Score=67.44 Aligned_cols=164 Identities=9% Similarity=-0.047 Sum_probs=99.3
Q ss_pred cEEEEECCCCcEEEEeecC----------CCCeEEEEEecCCC---EEEEEeCCCeEEEEEccCCCcccceeeccCc---
Q 018858 39 CICWFDLRSKDVQLVTDVG----------NGPVTSLCFKSGNE---DIIYVSSGKEVKSFDVHMPASWRPLESYNYN--- 102 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 102 (349)
.|..+|.++++.+..++.. ..++. +....+|+ .++.++.+|.+.++|.++++.......-...
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 5999999999998887632 12222 22334674 5677888999999999887644332211000
Q ss_pred -------ccce--------------------------EEEEEccCCCEEEEEcC--------------------------
Q 018858 103 -------KEEI--------------------------NQIVCNPKSSFLACADD-------------------------- 123 (349)
Q Consensus 103 -------~~~v--------------------------~~~~~~~~~~~l~~~~~-------------------------- 123 (349)
..++ ..++++|+..++++...
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 0000 23577787777765532
Q ss_pred -----------CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCC
Q 018858 124 -----------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 192 (349)
Q Consensus 124 -----------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
+|.|..||+.+++.+.++. ....+....+..
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~--~~~~~~~~~~~t------------------------------------ 473 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKW--EKFAAWGGTLYT------------------------------------ 473 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEE--ESSCCCSBCEEE------------------------------------
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEec--CCCCccceeEEE------------------------------------
Confidence 4667777877777766655 111121111111
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.+..+++++.||.|+.+|.++++.+-............+.+..+|+.++
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 3567777999999999999998877655544333333344556666555
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.44 E-value=0.00038 Score=56.57 Aligned_cols=115 Identities=11% Similarity=0.072 Sum_probs=70.4
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCC---CcccceeeccCcccceEEEEEcc
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMP---ASWRPLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~ 113 (349)
..|+..|+...+....+. ....+..++|++.++.|+.+. ..+.|..+++... .....+ ..........+++.+
T Consensus 10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDW 86 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--ECSSCSCCCEEEEET
T ss_pred CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--EeCCCCCcCEEEEee
Confidence 468999998876655444 345678999998766665554 5689999998751 111111 111123567889987
Q ss_pred CC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 114 KS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 114 ~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+ +..++-...+.|.++++........+. ........+++.|
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp 129 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDP 129 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEET
T ss_pred cCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCC
Confidence 55 444555677889999987543322222 2334567788887
No 280
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.44 E-value=0.00033 Score=63.13 Aligned_cols=119 Identities=8% Similarity=0.004 Sum_probs=73.0
Q ss_pred EEEEec-CCCEEEEEeCCC-----------eEEEEEccCCCcccceeecc-CcccceEEEEEccCCCEEEEEcC-CCcEE
Q 018858 63 SLCFKS-GNEDIIYVSSGK-----------EVKSFDVHMPASWRPLESYN-YNKEEINQIVCNPKSSFLACADD-GGDVK 128 (349)
Q Consensus 63 ~~~~~~-~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~ 128 (349)
..++.+ +++.++.|+.+. .+.+||..+++- ..+.... .+......+++..+++.+++|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w-~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV-SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB-CCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE-EeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 556677 788888887542 688999987642 3333221 12223445677788999999884 45799
Q ss_pred EEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CC----
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GD---- 203 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d---- 203 (349)
+||..+.+-...-.......-.+++..+ ++++++.|+ .+
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~------------------------------------dg~iyv~GG~~~~~~~ 312 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMS------------------------------------DGRVFTIGGSWSGGVF 312 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECT------------------------------------TSCEEEECCCCCSSSC
T ss_pred EecCcCCceeECCCCCccccccceEEec------------------------------------CCeEEEEeCcccCCcc
Confidence 9998865432211100111112334444 688888888 34
Q ss_pred -CeEEEEEccCceeee
Q 018858 204 -GVVDVINIESELNIS 218 (349)
Q Consensus 204 -g~i~i~d~~~~~~~~ 218 (349)
..+.+||..+.+...
T Consensus 313 ~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 313 EKNGEVYSPSSKTWTS 328 (656)
T ss_dssp CCCEEEEETTTTEEEE
T ss_pred cccceEeCCCCCccee
Confidence 468999998876544
No 281
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.41 E-value=4.9e-05 Score=67.19 Aligned_cols=165 Identities=9% Similarity=0.041 Sum_probs=100.5
Q ss_pred CcEEEEECCCCcEEEEeec--CC--------CCeEEEEEe-cCCC---EEEEEeCCCeEEEEEccCCCcccceeecc---
Q 018858 38 GCICWFDLRSKDVQLVTDV--GN--------GPVTSLCFK-SGNE---DIIYVSSGKEVKSFDVHMPASWRPLESYN--- 100 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 100 (349)
+.|..+|..+++.+..++. |. .++. +... .+|+ .++.++.+|.++++|.++++.+.....-.
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 6899999999999888764 32 2222 2222 4664 67888999999999998876443222110
Q ss_pred ----------------------------Cccc-----------ceEEEEEccCCCEEEEEc-------------------
Q 018858 101 ----------------------------YNKE-----------EINQIVCNPKSSFLACAD------------------- 122 (349)
Q Consensus 101 ----------------------------~~~~-----------~v~~~~~~~~~~~l~~~~------------------- 122 (349)
.... .-..++++|+...+++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 0000 001345666555554432
Q ss_pred --------------CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccc
Q 018858 123 --------------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDAD 188 (349)
Q Consensus 123 --------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (349)
.+|.|..||+.+++.+.+.+ .. .+...-....
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~-~~-~~~~~g~~~t-------------------------------- 495 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHK-EH-LPLWAGVLAT-------------------------------- 495 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEE-ES-SCCCSCCEEE--------------------------------
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEec-CC-CCCcccceEe--------------------------------
Confidence 24667777777777766655 11 1111100000
Q ss_pred ccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 189 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 189 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.+.++++++.||.++.||.++++.+-...........-+.+..+|+..+
T Consensus 496 ----agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 496 ----AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp ----TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ----CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 4567888999999999999999887766655444444567777877554
No 282
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.40 E-value=8.3e-05 Score=65.77 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.+.+++.++.||.|+.||.++++.+-...........-+.+..+|+..+
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 4667778999999999999999887766555444445566777776544
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.38 E-value=0.00073 Score=56.84 Aligned_cols=124 Identities=10% Similarity=0.028 Sum_probs=74.1
Q ss_pred eEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcc-cceeeccCcccceE
Q 018858 30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASW-RPLESYNYNKEEIN 107 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~ 107 (349)
+|+.+. ...|+..++........+. ....+..++|++.+..|+.+. ..+.|+.+++...... ..............
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 344333 3578888888665544443 456788999998766666654 5678998988642100 11111221234577
Q ss_pred EEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 108 QIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 108 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+++.+. +++.++-...+.|.+.++........+. ........+++.|
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp 211 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDP 211 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEET
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEec
Confidence 8899874 4555566667889999987554333333 2334567888887
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.34 E-value=7.5e-06 Score=74.05 Aligned_cols=158 Identities=13% Similarity=0.073 Sum_probs=88.8
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCC----CcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCC
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRS----KDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPA 91 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 91 (349)
.+..++|.+.++.++++-...+.|+.+++.. ......+.........|++.+.+..|+.+ ...+.|.++++....
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 3567889887344455545568899999875 22222222122234567887655444443 456789999887432
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
...+ +.........+++.|.+.+|+.... .+.|.++++.... ...+....-.....|+|+|+
T Consensus 487 -~~~l--~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~------------ 550 (699)
T 1n7d_A 487 -RKTL--FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLL------------ 550 (699)
T ss_dssp -EEEE--CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTT------------
T ss_pred -eEEE--EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEecc------------
Confidence 1221 1111244677899987655554432 2678777765322 22221012234566777773
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+++..
T Consensus 551 -----------------------~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 551 -----------------------SGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp -----------------------TCCEEEEETTTTEEEEECSSS
T ss_pred -----------------------CCEEEEEecCCCeEEEEccCC
Confidence 355556666778899998864
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.32 E-value=0.0019 Score=59.15 Aligned_cols=117 Identities=11% Similarity=0.009 Sum_probs=69.7
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcc-cceeeccCcccceEEEEEccCC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
..|+..++...+....+. ....+..++|.+....|+.+ ...+.|+.+++...... .....+.........|++.+.+
T Consensus 404 ~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence 468888887665444443 45667899999866665554 45678988888742110 1111122123456788998776
Q ss_pred C-EEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 116 S-FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 116 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+ ++++-...+.|.+.++........+. ........|++.|
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp 523 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDP 523 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEET
T ss_pred CcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEec
Confidence 4 44555667889999987544333332 2334577888887
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=0.0011 Score=56.67 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=71.0
Q ss_pred eeEEEEec-CCCceEEEeCCCCcEEEEECCCCcEEEEeecC---CCCeEEEEE-------ecCCCEEEEEeCCC------
Q 018858 18 ATCCIASR-DRPGFVASSGEDGCICWFDLRSKDVQLVTDVG---NGPVTSLCF-------KSGNEDIIYVSSGK------ 80 (349)
Q Consensus 18 i~~~~~~~-~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg------ 80 (349)
-..|+|+| ++++++++-...+.|++.|++++.....+... ......++| ++++++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 45789998 33445555444567899998877765444332 235789999 99999777766543
Q ss_pred -eEEEEEccC-CCcc-----cceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcC
Q 018858 81 -EVKSFDVHM-PASW-----RPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIR 133 (349)
Q Consensus 81 -~i~iwd~~~-~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~ 133 (349)
.|.+++... +... ..+..+ .....++++|++ .++++-..++.|..+|+.
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred ceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 366665443 1211 122222 345678889954 555666677889999987
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.22 E-value=0.0014 Score=53.25 Aligned_cols=116 Identities=9% Similarity=0.076 Sum_probs=68.1
Q ss_pred CCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccCcccceEEEEEcc
Q 018858 37 DGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 37 dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (349)
...|+..++.... ....+. ....+..++|.+.+..|+.+ ...+.|..+++........+.. ..-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--ECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CCCCCccEEEEEc
Confidence 3578899987653 222222 12346789999865555554 4568899999875422111111 1123466788887
Q ss_pred CC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 114 KS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 114 ~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+ ..+++-...+.|.++++........+. ........+++.|
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp 131 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDP 131 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEG
T ss_pred CCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeC
Confidence 54 455555667789999986533222222 2334567788877
No 288
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.21 E-value=0.0011 Score=53.42 Aligned_cols=105 Identities=9% Similarity=0.102 Sum_probs=55.7
Q ss_pred CceEEEeC-CC-----CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCc--
Q 018858 28 PGFVASSG-ED-----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPAS-- 92 (349)
Q Consensus 28 ~~~l~t~~-~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-- 92 (349)
+.+++.|+ .+ ..+.+||..+.+.... +....... +++ ..++..++.|+.+ ..+.+||..+.+.
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 45666776 32 3688999887653221 11111111 222 2356667777654 4689999887541
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCC-----cEEEEEcCCce
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDIRQHC 136 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 136 (349)
...+..++........+.+ +++.++.|+.++ .+.+||+.+.+
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 2333333222222222222 566777776543 57888877654
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.19 E-value=0.0012 Score=52.95 Aligned_cols=168 Identities=8% Similarity=0.093 Sum_probs=104.2
Q ss_pred ecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcccceeeccC-----c-ccceEEEEE---ccCCCEEEEEc--
Q 018858 55 DVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNY-----N-KEEINQIVC---NPKSSFLACAD-- 122 (349)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~-~~~v~~~~~---~~~~~~l~~~~-- 122 (349)
.....-..+++|.+....+..++ ..++|..|+...+.. ..+ .+.. . ...+..+.| .|+++++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 33344455788988666666666 789999999874422 222 2221 1 124578999 68877777543
Q ss_pred -----------CCCcEEEEEcC---CceEeceecc-c-----------cccceeEEEEccCCCCCCCCCCCCCCccccCC
Q 018858 123 -----------DGGDVKIIDIR---QHCLYKSLRA-G-----------HSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 123 -----------~dg~i~i~d~~---~~~~~~~~~~-~-----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
.+..|..||+. +++.+..... . .......++..+
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-------------------- 146 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-------------------- 146 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT--------------------
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC--------------------
Confidence 25679999998 7766544331 0 112356677766
Q ss_pred ceeEEeecCcccccCCCCcEEEEEcCC-CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeee
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVAKGD-GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 255 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
+|+..++++.. +.|..++... +.+. .+.
T Consensus 147 ----------------~GnaYVt~s~~~~~I~rV~pdG------------------------~~~~-----------~~~ 175 (334)
T 2p9w_A 147 ----------------DGNSYVAFALGMPAIARVSADG------------------------KTVS-----------TFA 175 (334)
T ss_dssp ----------------TSCEEEEEEESSCEEEEECTTS------------------------CCEE-----------EEE
T ss_pred ----------------CCCEEEeCCCCCCeEEEEeCCC------------------------CEEe-----------eee
Confidence 78888888877 7766665543 2111 000
Q ss_pred eeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 256 ~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
............+.|+++ |+|+.|++...+|.|..+|+..
T Consensus 176 ~~~~~~~~~~G~nGIv~~---pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 176 WESGNGGQRPGYSGITFD---PHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp ECCCCSSSCCSCSEEEEE---TTTTEEEEESSSSSEEEEECSS
T ss_pred ecCCCcccccCcceEEEe---CCCCEEEEEcCCCeEEEEcCCC
Confidence 000011122346789999 8998888887799999999885
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.18 E-value=0.0017 Score=53.00 Aligned_cols=275 Identities=9% Similarity=-0.048 Sum_probs=136.1
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee----cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD----VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
...+.++.|.++ +..++. +.+|.| +...+.++.-..+. .....+..+.+.+ +. ++.++..+.|.. ....+
T Consensus 35 ~~~~~~v~~~~~-~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDR-HHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEESSS-SCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTT
T ss_pred CCcEEEEEECCC-CcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCC
Confidence 457889988765 556664 456655 33334343211111 1245688899986 44 444555664443 33334
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
+....+.........+..+.+.+++..++.+. +|.|.. ....++.-..........+..+.+.|
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-------------- 172 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-------------- 172 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT--------------
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcC--------------
Confidence 44443332211224467777777676666554 554432 11223222222213344677777777
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee--eee
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI--LDQ 248 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 248 (349)
++.+++++...+..+-.|-....-.. ........+..+++.+++..+++... .-.
T Consensus 173 ----------------------~~~~~~~g~~G~~~~S~d~gG~tW~~-~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~ 229 (327)
T 2xbg_A 173 ----------------------SGEYVAVSSRGSFYSTWEPGQTAWEP-HNRTTSRRLHNMGFTPDGRLWMIVNGGKIAF 229 (327)
T ss_dssp ----------------------TSCEEEEETTSSEEEEECTTCSSCEE-EECCSSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred ----------------------CCcEEEEECCCcEEEEeCCCCCceeE-CCCCCCCccceeEECCCCCEEEEeCCceEEE
Confidence 67777766544433333321111111 11223345667778888876654211 000
Q ss_pred c--C-ceeeeeeeee-cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEE
Q 018858 249 S--G-GKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 324 (349)
Q Consensus 249 ~--~-~~~~~~~~~~-~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 324 (349)
. . ...+..+..- ..+...+..+.+. +++.+++++. ++.| ++..+.++. . ..+.........+..+
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~---~~~~~~~~g~-~g~i-~~S~DgG~t-W-----~~~~~~~~~~~~~~~v 298 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYR---TPNEVWLAGG-AGAL-LCSQDGGQT-W-----QQDVDVKKVPSNFYKI 298 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEES---SSSCEEEEES-TTCE-EEESSTTSS-C-----EECGGGTTSSSCCCEE
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEec---CCCEEEEEeC-CCeE-EEeCCCCcc-c-----EEcCccCCCCCCeEEE
Confidence 1 1 1112111111 0122357888888 6777666654 6766 344444421 0 1111111234567778
Q ss_pred EeecCCCCcEEEeeCCCeEEEee
Q 018858 325 CTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 325 ~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.+.+ ++ .+++++.+|.|.-++
T Consensus 299 ~~~~-~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 299 LFFS-PD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEEE-TT-EEEEECSTTEEEEEC
T ss_pred EEEC-CC-ceEEEcCCceEEEEc
Confidence 8754 43 577788899877654
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.13 E-value=0.00039 Score=55.79 Aligned_cols=162 Identities=13% Similarity=0.150 Sum_probs=103.7
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEE-eec----CC--CCeEEEEE---ecCCCEEEEEe-------
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV-TDV----GN--GPVTSLCF---KSGNEDIIYVS------- 77 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~l~~~~------- 77 (349)
.---.+++|++.++.++++.-..++|..||...+..... +.. .. ..+..+.| .|++.++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 334457889987455666665789999999876654333 221 11 13578999 58877666533
Q ss_pred ------CCCeEEEEEcc---CCCcccceee--cc-C-------cccceEEEEEccCCCEEEEEcCC-CcEEEEEcCCceE
Q 018858 78 ------SGKEVKSFDVH---MPASWRPLES--YN-Y-------NKEEINQIVCNPKSSFLACADDG-GDVKIIDIRQHCL 137 (349)
Q Consensus 78 ------~dg~i~iwd~~---~~~~~~~~~~--~~-~-------~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~ 137 (349)
.+..|..+|+. +++....... .. + .......++..++|+..++++.. +.|..++.....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT- 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence 15779999998 6654433221 10 0 11247899999999988888877 777777754332
Q ss_pred ecee--cc---ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 138 YKSL--RA---GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 138 ~~~~--~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
+..+ .. ......+.|++.| +++.|++....|.|..+|++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~p------------------------------------dg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDP------------------------------------HSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEET------------------------------------TTTEEEEESSSSSEEEEECS
T ss_pred EeeeeecCCCcccccCcceEEEeC------------------------------------CCCEEEEEcCCCeEEEEcCC
Confidence 2211 10 1112255777777 78888887779999999988
Q ss_pred C
Q 018858 213 S 213 (349)
Q Consensus 213 ~ 213 (349)
.
T Consensus 215 ~ 215 (334)
T 2p9w_A 215 K 215 (334)
T ss_dssp S
T ss_pred C
Confidence 4
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.09 E-value=0.005 Score=54.88 Aligned_cols=159 Identities=11% Similarity=0.023 Sum_probs=93.6
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~ 93 (349)
+....++|++.++.++++-...+.|..++++.... ...+...-.....+++.+.+..|+.+ ...+.|.+.++.... .
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~ 118 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-R 118 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-E
Confidence 34678899987455555655568898898875432 22333333568899999866655554 456899999987432 2
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
+.+.. ..-.....|++.|.+.+|+.... .+.|...++.......... ..-.....++++++
T Consensus 119 ~~l~~--~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~~P~Glald~~-------------- 181 (619)
T 3s94_A 119 KVLFW--QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYE-------------- 181 (619)
T ss_dssp EEEEC--SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSSEEEEEEETT--------------
T ss_pred EEEEe--CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-CCCCCCcEEEEEcc--------------
Confidence 22221 12345778999997655554442 3567766765332222222 22334567777762
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
+++++++-...+.|..+|+..
T Consensus 182 ---------------------~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 182 ---------------------EQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp ---------------------TTEEEEEETTTCCEEEESSSC
T ss_pred ---------------------CCEEEEEeCCCCeEEEecCCC
Confidence 344445545667888888875
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.07 E-value=0.0055 Score=54.69 Aligned_cols=158 Identities=6% Similarity=0.020 Sum_probs=99.1
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 94 (349)
.....++|++.++.++++-..++.|..+++........+.........+++.+.+..|+.+ ...+.|.+.++.... ..
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQ 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EE
Confidence 3567899999756666676778899999987654443443333456789998766666554 456789999987432 22
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
.+.. ..-.....+++.|....|+... ..+.|...++..... ..+. ..-.....++++++
T Consensus 116 ~l~~--~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~-~~~~~P~GlalD~~--------------- 176 (628)
T 4a0p_A 116 VLVW--KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLV-PNVGRANGLTIDYA--------------- 176 (628)
T ss_dssp EEEC--SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE-CSCSSEEEEEEETT---------------
T ss_pred EEEe--CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEE-CCCCCcceEEEccc---------------
Confidence 2211 1234578999998655555444 246787777764332 2222 23345677888772
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+|+..
T Consensus 177 --------------------~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 177 --------------------KRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp --------------------TTEEEEEETTTTEEEEEETTS
T ss_pred --------------------cCEEEEEECCCCEEEEEcCCC
Confidence 344444445678899998875
No 294
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.02 E-value=0.0029 Score=50.91 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=53.7
Q ss_pred CceEEEeCCC----CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCcccce
Q 018858 28 PGFVASSGED----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWRPL 96 (349)
Q Consensus 28 ~~~l~t~~~d----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~ 96 (349)
+.+++.|+.+ ..+..||..+.+-... +......- +++. -++..++.|+.+ ..+.+||..+.+ ...+
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQ-WTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTE-EEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-ECCEEEEEeCcCCCccccceEEECCCCCc-eeeC
Confidence 3566666643 3578899887653222 11111111 2222 256666676644 368889987643 3333
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCCC-----cEEEEEcCCce
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDIRQHC 136 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 136 (349)
...+........+.+ +++.++.|+.++ .+.+||+.+.+
T Consensus 93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 333222222222222 566777777553 47778877554
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.01 E-value=0.00015 Score=65.64 Aligned_cols=117 Identities=10% Similarity=0.004 Sum_probs=65.8
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCc-ccceeeccCcccceEEEEEccCC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
..|+..++...+....+.. ...+..++|.+.+..|+.+. ..+.|+.+++..... ......+.........|++.+.+
T Consensus 386 ~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred cceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 5688888877665444332 34567889998777776664 457899999874100 00111111111235567887544
Q ss_pred -CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 116 -SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 116 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+++++-...+.|.++++........+. ........+++.|
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~-~~~~~P~giavDp 505 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFR-EQGSKPRAIVVDP 505 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECC-CSSCCCCCEECCS
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEe-CCCCCcceEEEcc
Confidence 445555567789999987554332222 2223456677776
No 296
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.93 E-value=0.005 Score=49.57 Aligned_cols=103 Identities=11% Similarity=0.069 Sum_probs=55.7
Q ss_pred ceEEEeCC--CCcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC----CeEEEEEccCCCcccceeecc
Q 018858 29 GFVASSGE--DGCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG----KEVKSFDVHMPASWRPLESYN 100 (349)
Q Consensus 29 ~~l~t~~~--dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~ 100 (349)
.+++.|+. ...+.+||..+.+-... +.........+. -++..++.|+.+ ..+.+||..+.+ ...+..++
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDS-WYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTE-EEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCe-EEECCCCC
Confidence 45556654 35788999887654321 111111222222 256666777654 578899988653 33333332
Q ss_pred CcccceEEEEEccCCCEEEEEcCC------CcEEEEEcCCce
Q 018858 101 YNKEEINQIVCNPKSSFLACADDG------GDVKIIDIRQHC 136 (349)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~ 136 (349)
........+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 22222222222 56677777754 458888887654
No 297
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.91 E-value=0.0036 Score=53.16 Aligned_cols=117 Identities=10% Similarity=0.015 Sum_probs=64.8
Q ss_pred CceeeeEEEEecCCCceEEEeCCC---C-cEEEEECCCCcE-EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEc
Q 018858 14 HKATATCCIASRDRPGFVASSGED---G-CICWFDLRSKDV-QLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~d---g-~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 87 (349)
.......++++++ ++++++-... . .+...+...+.. ...+. .......++++| ++...++-..++.|+.++.
T Consensus 180 ~~~~P~giavd~d-G~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~ 257 (433)
T 4hw6_A 180 NIGQCADVNFTLN-GDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP 257 (433)
T ss_dssp CCSCEEEEEECTT-CCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred CCCCccEEEECCC-CCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence 3345778899998 6655544321 1 133333222111 11222 223456688899 5665555556788999988
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEE-EEEcCCCcEEEEEcC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFL-ACADDGGDVKIIDIR 133 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~ 133 (349)
.++.....+.... .......++|+|++++| ++-...+.|+.++..
T Consensus 258 ~~g~~~~~~~~~~-~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 258 ATGTLTEEEVMMD-TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TTCCEEEEEEECS-CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCeEEEEEeccC-CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 7554312222211 11223469999999855 455566789998865
No 298
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=0.001 Score=56.51 Aligned_cols=153 Identities=9% Similarity=0.054 Sum_probs=90.3
Q ss_pred ceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEee
Q 018858 105 EINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIA 183 (349)
Q Consensus 105 ~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (349)
....++++| ++..|+++...+.|+.+|+..+....... .......++|++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~--------------------------- 188 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTH--------------------------- 188 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECT---------------------------
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeC---------------------------
Confidence 467889998 45556655555789999988766543333 445577888888
Q ss_pred cCcccccCCCCcEEEEEcC-CC----eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeee
Q 018858 184 IPDADMLDKTNKICVVAKG-DG----VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 258 (349)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
+++.|+++.. ++ .+..++.... +. ....+.
T Consensus 189 ---------~G~~lyvad~~~~~~~~~v~~~~~~g~------------------------~~------------~~~~l~ 223 (430)
T 3tc9_A 189 ---------EADSMIITNDQNNNDRPNNYILTRESG------------------------FK------------VITELT 223 (430)
T ss_dssp ---------TSSEEEEEECCSCTTSEEEEEEEGGGT------------------------SC------------SEEEEE
T ss_pred ---------CCCEEEEEeCCCCcccceEEEEeCCCc------------------------ee------------eeeeec
Confidence 7775555543 22 2333332211 00 001111
Q ss_pred eecCCCcceEEEEEeeecC-CccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEe
Q 018858 259 SVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 259 ~~~~h~~~i~~i~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
. ......++++ | ++.++++-..++.|+.++...... ..+.. .........++++| ++++|+.+
T Consensus 224 ~----~~~p~giavd---p~~g~lyv~d~~~~~V~~~~~~~~~~-------~~~~~-~~~~~~P~gia~~p-dG~~lyv~ 287 (430)
T 3tc9_A 224 K----GQNCNGAETH---PINGELYFNSWNAGQVFRYDFTTQET-------TPLFT-IQDSGWEFHIQFHP-SGNYAYIV 287 (430)
T ss_dssp E----CSSCCCEEEC---TTTCCEEEEETTTTEEEEEETTTTEE-------EEEEE-CSSSSCCEEEEECT-TSSEEEEE
T ss_pred c----CCCceEEEEe---CCCCEEEEEECCCCEEEEEECCCCcE-------EEEEE-cCCCCcceeEEEcC-CCCEEEEE
Confidence 1 1234677888 7 677777766788999999886521 01111 11224567899988 77755555
Q ss_pred -eCCCeEEEee
Q 018858 338 -DTSKVVKVYS 347 (349)
Q Consensus 338 -~~dg~i~iw~ 347 (349)
...+.|..++
T Consensus 288 d~~~~~I~~~~ 298 (430)
T 3tc9_A 288 VVNQHYILRSD 298 (430)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCEEEEEe
Confidence 4667888765
No 299
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.84 E-value=0.0075 Score=48.63 Aligned_cols=104 Identities=10% Similarity=0.101 Sum_probs=54.3
Q ss_pred CceEEEeCCC----CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeC----C-----CeEEEEEccCCCc
Q 018858 28 PGFVASSGED----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSS----G-----KEVKSFDVHMPAS 92 (349)
Q Consensus 28 ~~~l~t~~~d----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~~~ 92 (349)
+.+++.|+.+ ..+.+||..+.+-... +....... +++. -++..++.|+. + ..+.+||..+.+
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~- 101 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ- 101 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE-
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe-
Confidence 5677777632 3688999887654322 11111111 2222 25666666665 2 368888987643
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCC-----CcEEEEEcCCce
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHC 136 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 136 (349)
...+..++........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 2333322222222222222 56677777643 357888887654
No 300
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.82 E-value=0.0011 Score=54.94 Aligned_cols=151 Identities=10% Similarity=-0.022 Sum_probs=89.9
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCC---CCCccceeeeeccccEEEEeeeeeecCcee---------------e
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEMEILDQSGGKR---------------L 254 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 254 (349)
++..++++ .++.||.-++.....-+.+..+ ....+..+..+|+|.++|..+.....+..- .
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence 44545444 3467777777643222222222 233678899999999999865443321110 0
Q ss_pred ee-eeeec----CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec-ccccceeeeccccccceEEEEeec
Q 018858 255 HL-DYSVG----GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT-SINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 255 ~~-~~~~~----~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
++ ...+. ....+|..+.|+|.+..+..|++-..|+.|++||+........ ................|.+++|.+
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 00 01111 1246799999998777888999999999999999997432221 000000011222336788999977
Q ss_pred CCCCcEEEee--CCCeEEE
Q 018858 329 TESENLVVCD--TSKVVKV 345 (349)
Q Consensus 329 ~~~~~l~~~~--~dg~i~i 345 (349)
++=.|...+ ..|.|+-
T Consensus 190 -~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 190 -DGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp -TSSCEEEEECTTSCEEEE
T ss_pred -CCcEEEEEecCCCCCEEE
Confidence 676677754 7787763
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.81 E-value=0.0091 Score=48.63 Aligned_cols=134 Identities=13% Similarity=0.151 Sum_probs=73.1
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
+.+..+.+.++ +..++.+. +|.|.. ..+.++. ..........+..+++.+++.+++.+...+..+-.|- .+....
T Consensus 122 ~~~~~i~~~~~-~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~ 197 (327)
T 2xbg_A 122 GSPRLIKALGN-GSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWE 197 (327)
T ss_dssp SCEEEEEEEET-TEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCE
T ss_pred CCeEEEEEECC-CCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCcee
Confidence 45677887766 56666554 554432 2223332 2222344567889999998887766654333333332 133333
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc---cccceeEEEEcc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG---HSSICSSVQFIP 156 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~ 156 (349)
.+.. .....+..+.+.+++..++. +.+|.+++.+...++.-..+... ....+.++.+.+
T Consensus 198 ~~~~--~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 198 PHNR--TTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EEEC--CSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred ECCC--CCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 3322 12356788889888876554 45677777643334433333201 123467777776
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.78 E-value=0.01 Score=48.15 Aligned_cols=197 Identities=11% Similarity=0.118 Sum_probs=111.8
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC----CC---EEEEEcC---CCcEEEEEcC--Cce
Q 018858 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK----SS---FLACADD---GGDVKIIDIR--QHC 136 (349)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~i~d~~--~~~ 136 (349)
....++.....+-+.+||+ +++.. ..+.. +.+..+..-|. ++ ++++... ++.|.+|++. +++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l---~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKML---HSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEE---EEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEE---EEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 4455666667788999999 55443 33321 34555555442 22 2333333 4789999773 333
Q ss_pred Eeceeccc-----cc-cceeEEEE--ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEE
Q 018858 137 LYKSLRAG-----HS-SICSSVQF--IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVD 207 (349)
Q Consensus 137 ~~~~~~~~-----~~-~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~ 207 (349)
+..+... .. ..+..+++ +|. .+. ++++...+|.+.
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~-----------------------------------~g~~yafV~~k~G~~~ 156 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQK-----------------------------------TGKYYAMVTGKEGEFE 156 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTT-----------------------------------TCCEEEEEECSSSEEE
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCC-----------------------------------CCcEEEEEECCCCeEE
Confidence 3333200 11 44556666 441 343 677888899999
Q ss_pred EEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 208 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
.|++.... +| ....+.+.++.- .+.+-.+... +....|+.+-+
T Consensus 157 q~~l~~~~--------------------~g-------------~~~~~lVR~f~l-gsq~EgcvvD---d~~g~Lyv~eE 199 (355)
T 3amr_A 157 QYELKADK--------------------NG-------------YISGKKVRAFKM-NSQTEGMAAD---DEYGRLYIAEE 199 (355)
T ss_dssp EEEEEECT--------------------TS-------------CEEEEEEEEEEC-SSCEEEEEEE---TTTTEEEEEET
T ss_pred EEEEEeCC--------------------CC-------------cccceEEEEecC-CCCcceEEEc---CCCCeEEEecc
Confidence 99985310 00 012244455543 2467788888 78889999999
Q ss_pred CCeEEEEecCCCcceecccccceeeec-cc-cccceEEEEeec-CCCC-cEEEee-CCCeEEEeeC
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKN-IN-LNKKVNWLCTTP-TESE-NLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~-~~~~-~l~~~~-~dg~i~iw~~ 348 (349)
|.-|+.++.+...... ..++... .+ ....+..|++.+ .+++ +|++++ .+.+..+||.
T Consensus 200 d~GIw~~da~p~~~~~----~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 200 DEAIWKFSAEPDGGSN----GTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp TTEEEEEECSTTSCSC----CEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred cceEEEEeCCcCCCCC----ceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 8777777755221000 0233222 12 334678888753 2344 566665 6778999986
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.75 E-value=0.01 Score=47.44 Aligned_cols=207 Identities=11% Similarity=0.164 Sum_probs=120.5
Q ss_pred EEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC
Q 018858 22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY 101 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (349)
-.+|. .+.+|.-. ..++.++|+++.+.+....- .+.|.--.|-.+ +.|+..+ +..|+-|+++... .+.+.+..
T Consensus 73 IMnP~-~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s--~P~kvFdR 145 (365)
T 2xzh_A 73 IMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGES--QPVKMFDR 145 (365)
T ss_dssp EECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSS-SEEEEEE-SSEEEEEESSTTC--CCEEEEEC
T ss_pred eeCCC-ccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCC-CeEEEEc-CCcEEEEcccCCC--CCceeeec
Confidence 34676 66666654 57899999999988888774 467888888643 4565555 5679999997532 22222222
Q ss_pred c----ccceEEEEEccCCCEEEEEcC-------CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 102 N----KEEINQIVCNPKSSFLACADD-------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 102 ~----~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
| ...|.....+++.++++..+- .|.+.+|..+.+ .-+.+. +|......+.+..+
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie-Ghaa~F~~~~~~g~------------- 210 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQFKMEGN------------- 210 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC-CSEEEEEEECCTTC-------------
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceee-eeeeeeEEEecCCC-------------
Confidence 2 245666677888888764332 367888887654 334555 66544333332210
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcC---CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
.....+|+.+.. .+++++.++....... .+ |.
T Consensus 211 --------------------~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~---~~---------f~------------- 245 (365)
T 2xzh_A 211 --------------------AEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QP---------FP------------- 245 (365)
T ss_dssp --------------------SSCEEEEEEEEEETTEEEEEEEECSSCCTTC---CC---------CC-------------
T ss_pred --------------------CCCceEEEEEEecCCCcEEEEEEcCCCCCCC---CC---------cc-------------
Confidence 001233443332 2578888875320000 00 00
Q ss_pred ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
.........-.....-.-++..+ +.-..++.-+.-|.|++||++++..
T Consensus 246 ---kk~vdi~fppea~~DFPVamqvs---~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 246 ---KKAVDVFFPPEAQNDFPVAMQIS---EKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp ---CEEEEECCCTTCTTCCEEEEEEE---TTTTEEEEEETTSEEEEEETTTCCE
T ss_pred ---cccceeeCCccccCCceEEEEec---ccCCEEEEEeCCcEEEEEEcccCcE
Confidence 00001111111223344578888 6777888888899999999999954
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.71 E-value=0.014 Score=48.00 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=45.1
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeec---cCcccceEEEEEccC---CCEEEEEcC----C---
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY---NYNKEEINQIVCNPK---SSFLACADD----G--- 124 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d--- 124 (349)
-.....++|.|+|+ |+++..+|.|++++ .+++ ..+..+ .........|+++|+ +..|.++.. +
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 34578899999997 55556679999887 3332 222221 112356889999997 444544332 2
Q ss_pred -CcEEEEEcCC
Q 018858 125 -GDVKIIDIRQ 134 (349)
Q Consensus 125 -g~i~i~d~~~ 134 (349)
..|..|+...
T Consensus 104 ~~~v~r~~~~~ 114 (354)
T 3a9g_A 104 RNRVIRGRLDG 114 (354)
T ss_dssp EEEEEEEEECS
T ss_pred ceEEEEEEECC
Confidence 4577777654
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.68 E-value=0.014 Score=46.84 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=56.6
Q ss_pred CceEEEeCCC-----CcEEEEECCCCc---EEEE--eecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCc
Q 018858 28 PGFVASSGED-----GCICWFDLRSKD---VQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPAS 92 (349)
Q Consensus 28 ~~~l~t~~~d-----g~i~vwd~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 92 (349)
+.+++.|+.+ ..+.+||..+.+ .... +.........+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~- 139 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ- 139 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE-
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe-
Confidence 5677777754 468899988765 3222 2211122222222 56666666643 368899987653
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCC-----CcEEEEEcCCce
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHC 136 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 136 (349)
...+...+........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc
Confidence 3333333222222222222 56777777654 358888887654
No 306
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.65 E-value=0.014 Score=46.75 Aligned_cols=104 Identities=10% Similarity=0.053 Sum_probs=54.8
Q ss_pred CceEEEeCCC-----CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEEccCCCcccc
Q 018858 28 PGFVASSGED-----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSGK-----EVKSFDVHMPASWRP 95 (349)
Q Consensus 28 ~~~l~t~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~ 95 (349)
+.+++.|+.+ ..+.+||..+.+-... +.........+. -+++.++.|+.++ .+.+||+.+.+ ...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~ 138 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNE-WFH 138 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTE-EEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCe-Eee
Confidence 5677777754 3588899887654322 111111122222 2566777776543 57888887643 233
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCC-------CcEEEEEcCCce
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDG-------GDVKIIDIRQHC 136 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~ 136 (349)
+...+........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 139 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred cCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 3322222122222222 56666776642 348888887654
No 307
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.63 E-value=0.017 Score=46.67 Aligned_cols=102 Identities=9% Similarity=-0.045 Sum_probs=53.6
Q ss_pred eEEEeCCCCcEEEEECCCCcEEE-EeecCCCCeEEEEEecCCCEEEEEeC-----C------CeEEEEEccCCCccccee
Q 018858 30 FVASSGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSS-----G------KEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-----d------g~i~iwd~~~~~~~~~~~ 97 (349)
+++.|+ ..+..||..+++-.. .+..........+...++..++.|+. . ..+.+||..+.+ ...+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE-WLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE-EEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe-EEECC
Confidence 455566 469999998877432 22211122223333456777777773 1 137788887643 23333
Q ss_pred eccCcccceEEEEEccCCCEEEEEcCC--------CcEEEEEcCCce
Q 018858 98 SYNYNKEEINQIVCNPKSSFLACADDG--------GDVKIIDIRQHC 136 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~ 136 (349)
..+........+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~ 128 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK 128 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc
Confidence 22211111222222 56667777632 348888887653
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.60 E-value=0.021 Score=47.03 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=60.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE--EEEee---cCCCCeEEEEEecC---CCEEEEEeC-C-----Ce
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTD---VGNGPVTSLCFKSG---NEDIIYVSS-G-----KE 81 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~ 81 (349)
..-..++|.|+ ++++++ ..+|.|.+++ +++. +..+. ........++++|+ +..|.++.. . +.
T Consensus 31 ~~P~~ia~~pd-G~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPD-GGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTT-SCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCC-CeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34568999998 775555 4569999998 4432 22221 12356889999998 555554433 2 67
Q ss_pred EEEEEccCCCc--cc-ceeecc---CcccceEEEEEccCCCEEEEEc
Q 018858 82 VKSFDVHMPAS--WR-PLESYN---YNKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 82 i~iwd~~~~~~--~~-~~~~~~---~~~~~v~~~~~~~~~~~l~~~~ 122 (349)
|..++...+.. .+ .+..+. ........++|.|++.+.++.+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88888764311 11 122222 1112346789999997666543
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.58 E-value=0.038 Score=49.32 Aligned_cols=122 Identities=10% Similarity=0.090 Sum_probs=73.7
Q ss_pred eEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 30 FVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
+|+.+ ....|+..+++.......+.. .-..+..++|++.+..|+.+ ..++.|..+++.... ...+. ........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~--~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVV--EFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE--CSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEE--eCCCCCcc
Confidence 44433 346799999987654433332 23467899999977776655 456889999887432 22221 11123567
Q ss_pred EEEEccCCC-EEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 108 QIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 108 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+++.+.+. +.++-...+.|.+.++........+. ..-.....+++.|
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp 132 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDP 132 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEET
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEcc
Confidence 888887654 44555567789999986443211222 2334467888887
No 310
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.57 E-value=0.038 Score=49.24 Aligned_cols=117 Identities=5% Similarity=-0.101 Sum_probs=75.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC--CCeEEEEEccCCCcc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS--GKEVKSFDVHMPASW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~ 93 (349)
.....+++.+.++++.++-...+.|.+.+++.......+...-.....|++.|.+.+|+.... .+.|...++.. ...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~ 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSR 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-Cce
Confidence 456789999864666777777889999998755433333334455678999997666665553 35677777653 222
Q ss_pred cceeeccCcccceEEEEEccCCCEEE-EEcCCCcEEEEEcCCc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLA-CADDGGDVKIIDIRQH 135 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~ 135 (349)
..+.. ..-.....+++.++++.|. +-...+.|..+|+...
T Consensus 163 ~~l~~--~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 163 FIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp EEEEC--SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred EEEEe--CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 22211 1234578899998765554 4455677998888644
No 311
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.56 E-value=0.032 Score=47.90 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=66.7
Q ss_pred eEEEEEec-CCCEEEEEeC-CCeEEEEEccCCCcccceeeccCcccceEEEEE-------ccCCCEEEEEcCCC------
Q 018858 61 VTSLCFKS-GNEDIIYVSS-GKEVKSFDVHMPASWRPLESYNYNKEEINQIVC-------NPKSSFLACADDGG------ 125 (349)
Q Consensus 61 v~~~~~~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~dg------ 125 (349)
...|+|+| ++..|+.+.. .+.|++.|++.+........-.........++| ++++++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 46889998 3555555544 467888898864322222211112235889999 99998666665543
Q ss_pred -cEEEEEcCC-ceEe-----ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE
Q 018858 126 -DVKIIDIRQ-HCLY-----KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 198 (349)
Q Consensus 126 -~i~i~d~~~-~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (349)
.|.+++... +... ..+. .-.....++++|+ ++.+++
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~-----------------------------------~g~LYv 263 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPI-----------------------------------NGELYF 263 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTT-----------------------------------TCCEEE
T ss_pred ceEEEEecCCCCceeecccceeec--cCCCceEEEEcCC-----------------------------------CCeEEE
Confidence 266665333 2221 1111 1122345556652 456666
Q ss_pred EEcCCCeEEEEEcc
Q 018858 199 VAKGDGVVDVINIE 212 (349)
Q Consensus 199 ~~~~dg~i~i~d~~ 212 (349)
+-..++.|..+|+.
T Consensus 264 td~~~g~V~r~d~~ 277 (496)
T 3kya_A 264 NSYEKGQVFRLDLV 277 (496)
T ss_dssp EETTTTEEEEECHH
T ss_pred EECCCCEEEEEecc
Confidence 67788899999987
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.53 E-value=0.025 Score=47.03 Aligned_cols=111 Identities=13% Similarity=0.249 Sum_probs=67.7
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeecc-CcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE---------
Q 018858 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN-YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL--------- 137 (349)
Q Consensus 68 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------- 137 (349)
.++..++.+- ++.||.-++......+.+..-. ..-..+..+..+|+|.+||..+. ..|.|..+-.+..
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence 3455554444 4667777776433333333311 01235778999999999998865 5788888863211
Q ss_pred ---eceeccc-----cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEE
Q 018858 138 ---YKSLRAG-----HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 209 (349)
Q Consensus 138 ---~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 209 (349)
.+.+..+ ...+|..+.|+| ... .+..|++-..|+.|++|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHP------------------------------l~~---~ds~LVVLtsD~~Ir~y 154 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHP------------------------------KSY---RDSCIVVLKEDDTITMF 154 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECT------------------------------TBG---GGCEEEEEETTSCEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEecc------------------------------ccC---CCCeEEEEecCCEEEEE
Confidence 0111100 123455566665 322 67889999999999999
Q ss_pred EccC
Q 018858 210 NIES 213 (349)
Q Consensus 210 d~~~ 213 (349)
|+..
T Consensus 155 Dl~~ 158 (452)
T 3pbp_A 155 DILN 158 (452)
T ss_dssp ETTC
T ss_pred Eccc
Confidence 9986
No 313
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.52 E-value=0.071 Score=51.16 Aligned_cols=224 Identities=10% Similarity=0.030 Sum_probs=118.3
Q ss_pred cEEEEECCCCcEEEEeec-CCCCeEEEEE---ec-CCCEEEEEe----------CCCeEEEEEccCCCcccceeeccCcc
Q 018858 39 CICWFDLRSKDVQLVTDV-GNGPVTSLCF---KS-GNEDIIYVS----------SGKEVKSFDVHMPASWRPLESYNYNK 103 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~-~~~~v~~~~~---~~-~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~ 103 (349)
.|++.|..+.+.+..++- ..+.+.+++. .. ...++++|+ ..|.|.+|++..+ ..+.+.... .+
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-kL~lv~~~~-v~ 885 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-KLQTVAEKE-VK 885 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT-EEEEEEEEE-ES
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC-EEEEEEEEE-cC
Confidence 466777776666555443 2344555543 22 246788876 2478999999743 233333222 25
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEee
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIA 183 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (349)
+.+++++-- +| +|++|- ...|++|++...+.++ ....+-..+..+....
T Consensus 886 g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~--------------------------- 934 (1158)
T 3ei3_A 886 GAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELR-TECNHYNNIMALYLKT--------------------------- 934 (1158)
T ss_dssp SCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEE-EEEEECCCSCEEEEEE---------------------------
T ss_pred CcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEE-EEeeccccEEEEEEec---------------------------
Confidence 678877644 35 444443 3689999998654333 1100111122212211
Q ss_pred cCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC
Q 018858 184 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 263 (349)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 263 (349)
.++++++|..-..|.++..+.. ... ...+.. .-+
T Consensus 935 ---------~~~~I~vgD~~~Sv~~~~y~~~----------------------~~~--------------L~~~a~-D~~ 968 (1158)
T 3ei3_A 935 ---------KGDFILVGDLMRSVLLLAYKPM----------------------EGN--------------FEEIAR-DFN 968 (1158)
T ss_dssp ---------ETTEEEEEESSBCEEEEEEETT----------------------TTE--------------EEEEEE-CCS
T ss_pred ---------cCCEEEEEEhhheEEEEEEEcC----------------------CCe--------------EEEEEe-ecc
Confidence 3677888887666766654421 000 111111 123
Q ss_pred CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc-ccceEEEEe---ecCC--------C
Q 018858 264 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCT---TPTE--------S 331 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~---~~~~--------~ 331 (349)
...++++.+- .+ ..++.+..+|.+.+......... .....++.....-| ...|+++.- .+.. .
T Consensus 969 ~~~vta~~~l---d~-~t~l~aD~~gNl~vl~~~~~~~~-~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~ 1043 (1158)
T 3ei3_A 969 PNWMSAVEIL---DD-DNFLGAENAFNLFVCQKDSAATT-DEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQ 1043 (1158)
T ss_dssp CBCEEEEEEE---ET-TEEEEEETTSEEEEEEECTTCCS-TTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEE
T ss_pred cccEEEEEEE---cc-CcEEEEcCCCcEEEEecCCCCCC-ccccceeeeEEEEeCCCcEeeEEeeeeecCCCcccccccc
Confidence 4578888886 34 57777889999999987663211 11111232222222 345666542 2211 2
Q ss_pred CcEEEeeCCCeEEEe
Q 018858 332 ENLVVCDTSKVVKVY 346 (349)
Q Consensus 332 ~~l~~~~~dg~i~iw 346 (349)
..++-++.+|.|-+.
T Consensus 1044 ~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1044 GSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp EEEEEEETTSCEEEE
T ss_pred ceEEEEecCCEEEEE
Confidence 247777888888653
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.48 E-value=0.027 Score=45.23 Aligned_cols=104 Identities=7% Similarity=0.055 Sum_probs=56.3
Q ss_pred CceEEEeCCC----CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC------CeEEEEEccCCCcccc
Q 018858 28 PGFVASSGED----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG------KEVKSFDVHMPASWRP 95 (349)
Q Consensus 28 ~~~l~t~~~d----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~ 95 (349)
+.+++.|+.+ ..+.+||..+.+-... +.........+.+ +++.++.|+.+ ..+.+||..+.+ ...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-W~~ 132 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES-WHT 132 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE-EEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc-eEe
Confidence 5677777754 5688899887654322 2211112222222 56667777654 468899988653 233
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcC---------CCcEEEEEcCCce
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADD---------GGDVKIIDIRQHC 136 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~ 136 (349)
+..++........+.+ +++.++.|+. ...+.+||+.+.+
T Consensus 133 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 3222221122222222 5666676653 3458888887653
No 315
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.48 E-value=0.034 Score=46.36 Aligned_cols=207 Identities=11% Similarity=0.166 Sum_probs=121.7
Q ss_pred EEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC
Q 018858 22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY 101 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (349)
-.+|. .+.+|.-. ..++.|+|+++.+.+....- ..+|.--.|-.+ +.|+..+ +..|+-|+++... .+.+.+..
T Consensus 72 IMnP~-~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s--~P~kvFdR 144 (494)
T 1bpo_A 72 IMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGES--QPVKMFDR 144 (494)
T ss_dssp EECSS-SSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSC--CCEEEEEC
T ss_pred eeCCC-CcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCC-CeEEEEc-CCeeEEecccCCC--Cchhheec
Confidence 45676 56676654 57899999999988888774 456777777643 4565555 6679999997532 23232222
Q ss_pred c----ccceEEEEEccCCCEEEEEc-------CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 102 N----KEEINQIVCNPKSSFLACAD-------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 102 ~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
| ...|.....+++.++++..+ -.|.+.+|..+.+ .-+.+. +|......+.+..+
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie-Ghaa~F~~~~~~g~------------- 209 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQFKMEGN------------- 209 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEEC-CSEEEEEEEECTTC-------------
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhe-eeeeeeEEEecCCC-------------
Confidence 2 24566677788888876433 2467888987654 334555 67655444443321
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcC---CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
......++.+.. .+.+++.++....... .+ |.
T Consensus 210 --------------------~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~---------f~------------- 244 (494)
T 1bpo_A 210 --------------------AEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QP---------FP------------- 244 (494)
T ss_dssp --------------------SSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CC---------CC-------------
T ss_pred --------------------CCCceEEEEEEecCCCcEEEEEEcCCCccCC---CC---------cc-------------
Confidence 001234444443 2788888885420000 00 00
Q ss_pred ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
.........-..-..-..++..+ +.-..+..-..-|.|++||++++..
T Consensus 245 ---kk~vdv~fppe~~~DFPvamqvs---~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 245 ---KKAVDVFFPPEAQNDFPVAMQIS---EKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp ---CEEEECCCCTTSTTCCEEEEEEE---TTTTEEEEEETTSEEEEEETTTCCE
T ss_pred ---ceeeeeeCCcccccCceeEEEec---ccCCEEEEEecCceEEEEeccccee
Confidence 00001111111223344578888 7777888888899999999999953
No 316
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.38 E-value=0.11 Score=49.95 Aligned_cols=74 Identities=11% Similarity=0.025 Sum_probs=50.6
Q ss_pred ceeeeEEEEecCC-----CceEEEeCC-CCcEEEEECCCCcEEEEeecC-CCCeEEEEEe--cCCCEEEEEeCCCeEEEE
Q 018858 15 KATATCCIASRDR-----PGFVASSGE-DGCICWFDLRSKDVQLVTDVG-NGPVTSLCFK--SGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 15 ~~~i~~~~~~~~~-----~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~dg~i~iw 85 (349)
.+.|.|+++.|.+ +++++.|.. |++++|+++.+.+.+....-. .....++.+. ....+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 4579999998642 368898886 999999999987765433221 2234444443 234578888899988766
Q ss_pred Ecc
Q 018858 86 DVH 88 (349)
Q Consensus 86 d~~ 88 (349)
.+.
T Consensus 633 ~~d 635 (1158)
T 3ei3_A 633 GLN 635 (1158)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.24 E-value=0.049 Score=43.75 Aligned_cols=104 Identities=9% Similarity=0.057 Sum_probs=54.9
Q ss_pred CceEEEeCC----C-----CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCC
Q 018858 28 PGFVASSGE----D-----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPA 91 (349)
Q Consensus 28 ~~~l~t~~~----d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 91 (349)
+.+++.|+. + ..+.+||..+.+-... +.........+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 567777775 2 3588889877653221 1111112222222 56666666643 468889987643
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCC-----CcEEEEEcCCce
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHC 136 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 136 (349)
...+..++........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 149 -W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 149 -WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp -EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred -EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 2222222221122222222 56677777654 358888887654
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.22 E-value=0.065 Score=43.92 Aligned_cols=104 Identities=20% Similarity=0.141 Sum_probs=60.5
Q ss_pred eeEEEEecCCCceEEEeC------------CCCcEEEEECCC--CcEE-EEeec-----CCCCeEEEEEec--CCC-EEE
Q 018858 18 ATCCIASRDRPGFVASSG------------EDGCICWFDLRS--KDVQ-LVTDV-----GNGPVTSLCFKS--GNE-DII 74 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~------------~dg~i~vwd~~~--~~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l~ 74 (349)
.-.+...|+ +..+++++ .+|.|.++|..+ ++.. ..+.+ .......+.+.+ ++. +|+
T Consensus 52 ~EDi~~~~~-G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPN-GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTT-SEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCC-CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 345566776 65555542 689999999874 3321 12222 224677788766 344 455
Q ss_pred EEeC---CCeEEEEEccCCC-cccceeeccCc-ccceEEEEEccCCCEEEEEc
Q 018858 75 YVSS---GKEVKSFDVHMPA-SWRPLESYNYN-KEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 75 ~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 122 (349)
++.. +.+|.+|++.... ....+..+.+. -...+.+.+.++|.+.++..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATND 183 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEES
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCC
Confidence 5532 4678888877532 22333333321 23578899999998777654
No 319
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.21 E-value=0.058 Score=43.18 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=64.4
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC
Q 018858 36 EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 36 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
.+..+.|-|+.++.....-+-. .-+.-.+|..+.||.-. ...++|+|+++.+ .++.+.- ...|..=.|-.+
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~~~ViALra-g~~LQiFnletK~---klks~~~-~e~VvfWkWis~- 117 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKS---KMKAHTM-TDDVTFWKWISL- 117 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTTTE---EEEEEEC-SSCEEEEEECSS-
T ss_pred CCCEEEEEECCCCCCccccccc---cceeeeCCCccEEEEec-CCeEEEechHHhh---hhcceec-CCccEEEEecCC-
Confidence 3447888898876543221111 12334588888777765 6789999999753 3344332 245666666543
Q ss_pred CEEEEEcCCCcEEEEEcCC-ceEeceecccc----ccceeEEEEccC
Q 018858 116 SFLACADDGGDVKIIDIRQ-HCLYKSLRAGH----SSICSSVQFIPW 157 (349)
Q Consensus 116 ~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~----~~~v~~~~~~~~ 157 (349)
+.|+..+. ..|+-|++.. ..+.+.+. .| ...|.....+++
T Consensus 118 ~~L~lVT~-taVyHWs~~~~s~P~kvFd-R~~~L~~~QIInY~~d~~ 162 (365)
T 2xzh_A 118 NTVALVTD-NAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAK 162 (365)
T ss_dssp SEEEEEES-SEEEEEESSTTCCCEEEEE-CCGGGTTCEEEEEEECTT
T ss_pred CeEEEEcC-CcEEEEcccCCCCCceeee-cchhcccceEEEEEECCC
Confidence 45554444 4799999974 34444444 33 234555555553
No 320
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.011 Score=48.08 Aligned_cols=114 Identities=10% Similarity=0.106 Sum_probs=71.1
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecC-CCCeEEEEEe--cCCCEEEEE--eCCCeEEEEEccCCCcccceeeccC-c
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFK--SGNEDIIYV--SSGKEVKSFDVHMPASWRPLESYNY-N 102 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~-~ 102 (349)
.+++.++.||.|.-.|.++|+.++.++.. ..++....-. +.+..++.+ +.||.|..++.+++.....+..-.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 57888999999999999999999988754 1233321110 112234433 5799999999877632221111000 0
Q ss_pred ccceEE---EEE-c----cCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 103 KEEINQ---IVC-N----PKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 103 ~~~v~~---~~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
..++.. ... . ..+..+++|+.+|.+...|+++|+.+.++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 011111 000 0 135678899999999999999999998887
No 321
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.14 E-value=0.071 Score=43.04 Aligned_cols=103 Identities=10% Similarity=-0.032 Sum_probs=52.3
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEE-EeecCCCCeEEEEEecCCCEEEEEeC----CC-------eEEEEEccCCCcccce
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSS----GK-------EVKSFDVHMPASWRPL 96 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~ 96 (349)
.+++.|+. .+..||..+.+-.. .+..............++..++.|+. ++ .+.+||..+.+ ...+
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-W~~~ 93 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE-WVGL 93 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE-EEEC
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc-EEEC
Confidence 34555554 38899998776533 12211122222233456777777773 11 27788877643 2333
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCC-------CcEEEEEcCCce
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDG-------GDVKIIDIRQHC 136 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~ 136 (349)
...+..........+ +++.++.|+.+ ..+.+||..+.+
T Consensus 94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 138 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAK 138 (318)
T ss_dssp SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTE
T ss_pred CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCC
Confidence 222221122222222 56677777653 247788877654
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.99 E-value=0.085 Score=42.51 Aligned_cols=104 Identities=11% Similarity=0.029 Sum_probs=52.8
Q ss_pred CceEEEeCC-----C------CcEEEEECCCCcEEEEeecCCCCe--EEEEEecCCCEEEEEeCC--------CeEEEEE
Q 018858 28 PGFVASSGE-----D------GCICWFDLRSKDVQLVTDVGNGPV--TSLCFKSGNEDIIYVSSG--------KEVKSFD 86 (349)
Q Consensus 28 ~~~l~t~~~-----d------g~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d--------g~i~iwd 86 (349)
+.+++.|+. . ..+.+||..+.+-.. +..-..+- .+++.. +++.++.|+.+ ..+.+||
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d 123 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYD 123 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEEC
Confidence 677777763 1 127788887765422 11111111 112222 55666666632 4688999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-C-----CcEEEEEcCCce
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-G-----GDVKIIDIRQHC 136 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~ 136 (349)
..+.+ ...+..++........+. -+++.++.|+. + ..+.+||..+.+
T Consensus 124 ~~~~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 124 RLSFK-WGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TTTTE-EEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CCCCc-EeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 88653 333333222112222222 35667777775 2 358888887653
No 323
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.98 E-value=0.11 Score=42.37 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=66.7
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE--EEe----ecCCCCeEEEEEecC---CCEEEEE---
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVT----DVGNGPVTSLCFKSG---NEDIIYV--- 76 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~----~~~~~~v~~~~~~~~---~~~l~~~--- 76 (349)
..+-..-..-+.++|.|+ +.++++--..|.|++++...++.. ..+ .........|+++|+ +..|...
T Consensus 25 ~~va~gL~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred EEeecCCCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 334333445678999998 788777766899999987655542 222 123456889999995 3444432
Q ss_pred eCCCeEEEEEccCCC----c---cc-ceeeccC-cccceEEEEEccCCCEEEEEcC
Q 018858 77 SSGKEVKSFDVHMPA----S---WR-PLESYNY-NKEEINQIVCNPKSSFLACADD 123 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~----~---~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 123 (349)
..++.|.-|.+..+. . .+ .+..+.. .......|+|.|++.+.++.+.
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence 234566666665421 1 11 1122221 1123456899999977666543
No 324
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.93 E-value=0.13 Score=42.32 Aligned_cols=104 Identities=11% Similarity=0.102 Sum_probs=60.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-EEEEee---cCCCCeEEEEEecC---CCEEEEEeC----C----C
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-VQLVTD---VGNGPVTSLCFKSG---NEDIIYVSS----G----K 80 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g 80 (349)
..-..++|.|+ ++++++ ..+|.|++++ .+++ .+..+. ........|+++|+ +..|.++.. + .
T Consensus 29 ~~P~~ia~~pd-G~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGG-GRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEET-TEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCC-CeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 44678999998 775555 5559999997 3454 222221 12356889999997 455554432 2 5
Q ss_pred eEEEEEccCCC--c--ccc-eeeccC-cccceEEEEEccCCCEEEEEc
Q 018858 81 EVKSFDVHMPA--S--WRP-LESYNY-NKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 81 ~i~iwd~~~~~--~--~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 122 (349)
.|..|+..... . .+. +..+.. .......++|.|++.+.++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 67777765431 0 111 121221 112346799999998666643
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.81 E-value=0.16 Score=41.75 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=37.5
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeec----cCcccceEEEEEccC---CCEEEEE
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY----NYNKEEINQIVCNPK---SSFLACA 121 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~ 121 (349)
.....|+|.|+|+.|+++...|.|++++.. +.....+..+ .........++++|+ +..|...
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 356789999999845555668999999853 2211111111 112345789999996 4444433
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.79 E-value=0.17 Score=41.60 Aligned_cols=103 Identities=11% Similarity=0.091 Sum_probs=56.9
Q ss_pred eeeEEEEecCCCc-eEEEeCCCCcEEEEECCCCcEEEE---e----ecCCCCeEEEEEecC---CCEEEEEe-C------
Q 018858 17 TATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLV---T----DVGNGPVTSLCFKSG---NEDIIYVS-S------ 78 (349)
Q Consensus 17 ~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~~~~-~------ 78 (349)
.-..++|.|+ ++ ++++ ...|.|++++.. ++.... + .........++++|+ +..|..+. .
T Consensus 19 ~P~~i~~~pd-G~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 19 HPWALAFLPD-NHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SEEEEEECST-TCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CcEEEEEcCC-CCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4578999998 77 5554 457899999853 332111 1 112346789999995 44554442 2
Q ss_pred -CCeEEEEEccCCC----cccc-eeeccC---cccceEEEEEccCCCEEEEEc
Q 018858 79 -GKEVKSFDVHMPA----SWRP-LESYNY---NKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 79 -dg~i~iwd~~~~~----~~~~-~~~~~~---~~~~v~~~~~~~~~~~l~~~~ 122 (349)
...|..+++.... ..+. +..+.. .......++|.|++.+.++-+
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 2356666665321 1111 112221 112245799999996655543
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.77 E-value=0.19 Score=42.04 Aligned_cols=224 Identities=10% Similarity=0.115 Sum_probs=121.7
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC
Q 018858 36 EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 36 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
.+..+.|-|+.++..+..-+- ..-+.-.+|..+.||.-. ...++|+|+++.+ .++.+.-. ..|..=.|-.+
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~---klks~~~~-e~VvfWkWis~- 116 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKS---KMKAHTMT-DDVTFWKWISL- 116 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTE---EEEEEECS-SCCCEEEEEET-
T ss_pred CCCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhh---hhcceecC-CCceEEEecCC-
Confidence 344788888887654322111 112344678888777665 7899999999753 33333322 45655566533
Q ss_pred CEEEEEcCCCcEEEEEcCC-ceEeceecccc----ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccccc
Q 018858 116 SFLACADDGGDVKIIDIRQ-HCLYKSLRAGH----SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADML 190 (349)
Q Consensus 116 ~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
+.|+..+. ..|+-|++.. ..+.+.+. .| ...|.....+++
T Consensus 117 ~~l~lVT~-taVyHWsi~~~s~P~kvFd-R~~~L~~~QIInY~~d~~--------------------------------- 161 (494)
T 1bpo_A 117 NTVALVTD-NAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAK--------------------------------- 161 (494)
T ss_dssp TEEEEECS-SEEEEEESSSSCCCEEEEE-CCGGGTTCEEEEEEECTT---------------------------------
T ss_pred CeEEEEcC-CeeEEecccCCCCchhhee-cchhcccceEEEEEECCC---------------------------------
Confidence 35555544 4799999974 33444444 33 234555555553
Q ss_pred CCCCcEEEEEc-------CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC
Q 018858 191 DKTNKICVVAK-------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 263 (349)
Q Consensus 191 ~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 263 (349)
.+.++..+ -.|.+.+|..+.+ ....+.+|
T Consensus 162 ---~kW~~l~GI~~~~~~v~G~mQLYS~er~-----------------------------------------~sQ~ieGh 197 (494)
T 1bpo_A 162 ---QKWLLLTGISAQQNRVVGAMQLYSVDRK-----------------------------------------VSQPIEGH 197 (494)
T ss_dssp ---SSEEEEEEEEEETTEEEEEEEEEESTTC-----------------------------------------CEEEECCS
T ss_pred ---CCeEEEEeecccCCcccceEEEeecccc-----------------------------------------ccchheee
Confidence 44433222 1367788888752 33445556
Q ss_pred CcceEEEEEeeecCCccEEEEeeC---CCeEEEEecCCCc-ceecccccceeeec---cccccceEEEEeecCCCCcEEE
Q 018858 264 TAAASCVAFSMFGERGKYLISGGN---DKLVKVWDCSRFQ-GVQTSINNDLLIKN---INLNKKVNWLCTTPTESENLVV 336 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~-~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~ 336 (349)
.+....+.+.-.......++.+.. .++++|-++.... .... -..+....+ ....+-..++..++..| .++.
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~-f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyv 275 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP-FPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFL 275 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCC-CCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCC-ccceeeeeeCCcccccCceeEEEecccCC-EEEE
Confidence 554433332100000123333322 2789999986531 1100 000111111 22355677788877544 7888
Q ss_pred eeCCCeEEEeeCC
Q 018858 337 CDTSKVVKVYSIS 349 (349)
Q Consensus 337 ~~~dg~i~iw~~~ 349 (349)
.+.-|.|+++|++
T Consensus 276 iTK~G~i~lyDle 288 (494)
T 1bpo_A 276 ITKYGYIHLYDLE 288 (494)
T ss_dssp EETTSEEEEEETT
T ss_pred EecCceEEEEecc
Confidence 8999999999974
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.74 E-value=0.28 Score=47.59 Aligned_cols=121 Identities=12% Similarity=0.215 Sum_probs=73.2
Q ss_pred EecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCc
Q 018858 23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYN 102 (349)
Q Consensus 23 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 102 (349)
.+|. .+.+|.-. ..++.|+|+++...+..+.- ..+|.--.|-.. +.|+..+ +..|.-|++.... .+.+.+..|
T Consensus 73 MnP~-~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s--~P~k~fdR~ 145 (1630)
T 1xi4_A 73 MNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGES--QPVKMFDRH 145 (1630)
T ss_pred cCCC-cceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeEEEc-CCeEEEeccCCCC--ccHHHHhcc
Confidence 4555 55566544 57899999998877766663 456777777643 3455555 5679999996422 222222222
Q ss_pred ----ccceEEEEEccCCCEEEEEc-------CCCcEEEEEcCCceEeceeccccccceeEE
Q 018858 103 ----KEEINQIVCNPKSSFLACAD-------DGGDVKIIDIRQHCLYKSLRAGHSSICSSV 152 (349)
Q Consensus 103 ----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 152 (349)
...|.....+++.++++..+ -.|.+.+|..+.+ ..+.+. +|......+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~ie-gha~~F~~~ 204 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQF 204 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhh-HhHhhhhee
Confidence 24566667788888876432 3477888887643 234444 665444333
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.59 E-value=0.21 Score=40.22 Aligned_cols=104 Identities=11% Similarity=0.053 Sum_probs=52.3
Q ss_pred CceEEEeCC----CC-------cEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC-------CeEEEEEc
Q 018858 28 PGFVASSGE----DG-------CICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-------KEVKSFDV 87 (349)
Q Consensus 28 ~~~l~t~~~----dg-------~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~iwd~ 87 (349)
+.+++.|+. ++ .+.+||..+.+-... +....... +++.. +++.++.|+.+ ..+.+||.
T Consensus 57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~ 134 (318)
T 2woz_A 57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDP 134 (318)
T ss_dssp SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeC
Confidence 677777773 12 167788876654322 11111111 22222 56666777653 35788888
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcC------CCcEEEEEcCCce
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD------GGDVKIIDIRQHC 136 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~ 136 (349)
.+.+ ...+..++........+. .+++.++.|+. ...+.+||+.+.+
T Consensus 135 ~~~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 135 VAAK-WSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTTE-EEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCCC-EeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 7643 232222221111112222 35667777764 2358889987654
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.58 E-value=0.24 Score=40.67 Aligned_cols=92 Identities=10% Similarity=0.080 Sum_probs=45.5
Q ss_pred CceEEEeCCC-CcEEEEECCC--CcEEEEeec-C--CCCeEEEEEecCCCEEEEEeC-C---------CeEEEEEccCCC
Q 018858 28 PGFVASSGED-GCICWFDLRS--KDVQLVTDV-G--NGPVTSLCFKSGNEDIIYVSS-G---------KEVKSFDVHMPA 91 (349)
Q Consensus 28 ~~~l~t~~~d-g~i~vwd~~~--~~~~~~~~~-~--~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~~~ 91 (349)
+.+++.|+.+ ..+.+||..+ .+-. .+.. . ...-.+++.. +++.++.|+. + ..+.+||..+.+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 5676766643 5688899864 3322 2211 1 1111122222 5666666665 2 468899988643
Q ss_pred cccceeecc-CcccceEEEEEccCCCEEEEEcCC
Q 018858 92 SWRPLESYN-YNKEEINQIVCNPKSSFLACADDG 124 (349)
Q Consensus 92 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 124 (349)
...+.... .......++. .+++.++.|+.+
T Consensus 98 -W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 -WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp -EEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred -EEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 22222222 1111222222 466777888754
No 331
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.38 E-value=0.55 Score=42.58 Aligned_cols=107 Identities=9% Similarity=0.135 Sum_probs=59.6
Q ss_pred CceEEEeCCC----CcEEEEECCCCcEEEEe-e------cCCCCeEEEEEec-CCCEEEEEeCC------CeEEEEEccC
Q 018858 28 PGFVASSGED----GCICWFDLRSKDVQLVT-D------VGNGPVTSLCFKS-GNEDIIYVSSG------KEVKSFDVHM 89 (349)
Q Consensus 28 ~~~l~t~~~d----g~i~vwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~ 89 (349)
+.+++.||.+ ..+.+||..+.+....- . .....-.+++..+ +++.++.|+.+ ..+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 5677777753 45888898876643222 1 1111122333333 67777777743 3588889876
Q ss_pred CCcccceeeccCcccceEEEEEccCCCEEEEEcCCC--cEEEEEcCCce
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG--DVKIIDIRQHC 136 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~ 136 (349)
.+ ...+...+.....- +.+...+++.++.|+.++ .+.+||..+.+
T Consensus 478 ~~-W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 478 RE-WSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp TE-EEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred Cc-EEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence 42 23332222111122 223323678888887654 68999988654
No 332
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.33 E-value=0.34 Score=39.69 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=37.1
Q ss_pred ceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee
Q 018858 266 AASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 266 ~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
..+.++|+ ||+++|+.+. ..+.|+.|++....... ....+ ...+..-.+++.+.+|++.+++.
T Consensus 222 ~pNGia~s---pDg~~lYvadt~~~~I~~~~~~~~g~l~------~~~~~-~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 222 FANGINIS---PDGKYVYIAELLAHKIHVYEKHANWTLT------PLRVL-SFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp SEEEEEEC---TTSSEEEEEEGGGTEEEEEEECTTSCEE------EEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred ccCcceEC---CCCCEEEEEeCCCCeEEEEEECCCCcEe------cCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence 46889999 8987776554 56889999986421111 01111 22345666777552366555454
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.21 E-value=0.5 Score=45.92 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=62.3
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCC
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS 116 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 116 (349)
...+.|-|+.++..+..-+ -..-+.-.+|..+.||.-. ...++|+|+++... ++.+.- ...|..=.|-.. +
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k---lks~~~-~e~VvfWkWis~-~ 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK---MKAHTM-TDDVTFWKWISL-N 117 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhh---hccccc-CCCceEEEecCC-C
Confidence 3478888887765431111 1112334678777666654 77899999987533 333322 245555566433 3
Q ss_pred EEEEEcCCCcEEEEEcCC-ceEeceecccc----ccceeEEEEccCCCC
Q 018858 117 FLACADDGGDVKIIDIRQ-HCLYKSLRAGH----SSICSSVQFIPWKPW 160 (349)
Q Consensus 117 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~----~~~v~~~~~~~~~~~ 160 (349)
.|+..+. ..|+.|++.. ..+.+.+. .| ...|..-..+++..|
T Consensus 118 ~l~lVT~-~aVyHW~~~~~s~P~k~fd-R~~~L~~~QIinY~~d~~~kW 164 (1630)
T 1xi4_A 118 TVALVTD-NAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKW 164 (1630)
T ss_pred eeEEEcC-CeEEEeccCCCCccHHHHh-cchhcccCeeEEeeeCCCCCe
Confidence 4544443 4799999974 33444444 33 334555555664333
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.16 E-value=0.53 Score=40.18 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=62.1
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE--EEeec------CCCCeEEEEEecC---CCEEEEEeC------
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVTDV------GNGPVTSLCFKSG---NEDIIYVSS------ 78 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~~~------ 78 (349)
..-+.++|.|+ ++++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34568999998 787777554457888886655542 22221 2456789999995 555544432
Q ss_pred -------CCeEEEEEccCCC----ccc-ceeeccC-cccceEEEEEccCCCEEEEEcC
Q 018858 79 -------GKEVKSFDVHMPA----SWR-PLESYNY-NKEEINQIVCNPKSSFLACADD 123 (349)
Q Consensus 79 -------dg~i~iwd~~~~~----~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 123 (349)
...|.-+++.... ..+ .+..+.. .......|+|.|+|.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666654321 111 1222221 1234688999999987776543
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.01 E-value=0.51 Score=38.65 Aligned_cols=51 Identities=2% Similarity=-0.074 Sum_probs=27.6
Q ss_pred CceEEEeCC-C---------CcEEEEECCCCcEEEEeecC-C-CCeEEEEEecCCCEEEEEeCC
Q 018858 28 PGFVASSGE-D---------GCICWFDLRSKDVQLVTDVG-N-GPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 28 ~~~l~t~~~-d---------g~i~vwd~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~~d 79 (349)
+++++.|+. + ..+.+||..+.+-...-... . ..-.+++. .+++.++.|+.+
T Consensus 66 ~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 66 GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred CEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 577777775 2 46888998876543221111 1 11122222 467777778754
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.79 E-value=0.42 Score=35.96 Aligned_cols=29 Identities=3% Similarity=0.004 Sum_probs=21.6
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
..+..++|+|++.+.++ .+|.++-.+..+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t 69 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPT 69 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCC
Confidence 36789999998886666 667777666543
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.70 E-value=0.19 Score=37.77 Aligned_cols=105 Identities=10% Similarity=-0.044 Sum_probs=61.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE------EEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------QLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 89 (349)
.+..++|+|+ +.+.+. .+|.++-.+..+... -..+-. --....++.|.|+|.+.++ .||.|.-++-.+
T Consensus 42 ~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCC-ccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5779999996 775555 667766666544211 111110 0011367889999987777 569888776533
Q ss_pred CCcccce----eeccCcccceEEEEEccCCCEEEEEcCCCcEE
Q 018858 90 PASWRPL----ESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128 (349)
Q Consensus 90 ~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (349)
.....-+ ..-...-..+..|.+.|+|.+.++. |+.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 2111100 0001112467899999999877776 66654
No 338
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.28 E-value=1.7 Score=39.78 Aligned_cols=113 Identities=7% Similarity=0.139 Sum_probs=64.1
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
..|.++....+ + .|..|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -|..+|..+++. ..
T Consensus 63 ~~i~~i~~d~~-g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~-~~ 135 (758)
T 3ott_A 63 TRIYCGVIIDN-T-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL-TS 135 (758)
T ss_dssp SCEEEEEEETT-T-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE-EE
T ss_pred ceEEEEEEcCC-C-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE-EE
Confidence 45888777665 4 566666555 789998765432111112234666654 344 56667766 588888765432 11
Q ss_pred eee--ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 96 LES--YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 96 ~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
+.. .......|.++....++...+ |+.+ -+..++..+++.
T Consensus 136 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~ 177 (758)
T 3ott_A 136 FDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKF 177 (758)
T ss_dssp ECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEE
T ss_pred eccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCce
Confidence 110 011134577887777776554 4544 477888776543
No 339
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.25 E-value=1 Score=36.90 Aligned_cols=73 Identities=7% Similarity=0.074 Sum_probs=45.5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeec---cCcccceEEEEEccC---CCEEEEEcC-C-----C
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY---NYNKEEINQIVCNPK---SSFLACADD-G-----G 125 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~-d-----g 125 (349)
-.....++|.|+|++ +++...|.|.+++ .++ ...+... .........++++|+ +..|.++.. . .
T Consensus 30 l~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGM-LIAERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCE-EEEETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeE-EEEeCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 345678999999984 4555679999998 332 2222211 112356889999998 545544332 2 5
Q ss_pred cEEEEEcCC
Q 018858 126 DVKIIDIRQ 134 (349)
Q Consensus 126 ~i~i~d~~~ 134 (349)
.|..++...
T Consensus 106 ~v~r~~~~~ 114 (352)
T 2ism_A 106 QVVRLRHLG 114 (352)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEeCC
Confidence 677777764
No 340
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.22 E-value=0.87 Score=35.95 Aligned_cols=104 Identities=10% Similarity=0.009 Sum_probs=54.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC-Ccccc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASWRP 95 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~ 95 (349)
.|..++.... ..++. . ||.++.|-......+..-......|..++..... .++. . ||.|..|-.... +...+
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 5677766533 33333 4 8999999754321111101112356666654332 2333 4 899999976542 21111
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
.. . ...|..++.... +.+.-. +|.|+.|-...
T Consensus 98 ~~-~---~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~ 129 (282)
T 3qhy_B 98 AE-A---RSGVDAIAAGAW--ASYALK-DGKVIAWGDDS 129 (282)
T ss_dssp GG-G---SSSEEEEEEETT--EEEEEE-TTEEEEEECCT
T ss_pred cc-c---CCCeEEEECcCC--EEEEEe-CCeEEEecCCC
Confidence 11 1 245777766543 333334 89999997653
No 341
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.58 E-value=1.7 Score=36.14 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=55.2
Q ss_pred ceeeeEEEEecCCCceEEEeCCCC----cEEEEECCCCcEEEEeec--------------CCCCeEEEEEecC--CCEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDG----CICWFDLRSKDVQLVTDV--------------GNGPVTSLCFKSG--NEDII 74 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg----~i~vwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~--~~~l~ 74 (349)
...|.+|++.|.+...|+.++..| .|...+ +.++.-..+.. ....|.++++.|. ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 356999999983344555555444 344332 22332111111 1124777888862 45666
Q ss_pred EEeCCCeEEEEEccCCCcccceeecc----------------CcccceEEEEEccC-CCEEEEEcCCCcEEE
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLESYN----------------YNKEEINQIVCNPK-SSFLACADDGGDVKI 129 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i 129 (349)
.++..+.|...+ ..++....+.... .....+.+|.+.|. ...+..+..++.|..
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~ 203 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFE 203 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEE
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEE
Confidence 666566554432 2233333222110 01235778889874 345555544444433
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.11 E-value=2.6 Score=38.24 Aligned_cols=107 Identities=9% Similarity=0.127 Sum_probs=59.3
Q ss_pred CceEEEeCCC------CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCCC--eEEEEEccCCCccccee
Q 018858 28 PGFVASSGED------GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSGK--EVKSFDVHMPASWRPLE 97 (349)
Q Consensus 28 ~~~l~t~~~d------g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 97 (349)
+.+++.||.+ ..+.+||..+.+-... +...... .+++...+++.++.|+.++ .+.+||..+.. ...+.
T Consensus 452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-W~~~~ 529 (695)
T 2zwa_A 452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI-FKDVT 529 (695)
T ss_dssp TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE-EEECC
T ss_pred CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc-eEEcc
Confidence 6777777754 3578888887543222 1111111 2233324777788887654 68999988653 22222
Q ss_pred e---ccCcccceEEEEEccC-CCEEEEEcC--C-----CcEEEEEcCCce
Q 018858 98 S---YNYNKEEINQIVCNPK-SSFLACADD--G-----GDVKIIDIRQHC 136 (349)
Q Consensus 98 ~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~ 136 (349)
. .+........+.+..+ ++.++.|+. + ..+.+||+.+.+
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1 1111222333555554 667777765 2 358888887665
No 343
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.98 E-value=2.1 Score=34.88 Aligned_cols=81 Identities=9% Similarity=0.082 Sum_probs=48.3
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeec----cCcccceEEEEEccC---CCEEEEE---c
Q 018858 53 VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY----NYNKEEINQIVCNPK---SSFLACA---D 122 (349)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~---~ 122 (349)
.+...-.....|+|.|+|..+++--..|.|++++...++. ..+..+ .........|+++|+ +..|... .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 3333445678999999998666655589999987654432 222211 123456889999995 3444332 2
Q ss_pred CCCcEEEEEcCC
Q 018858 123 DGGDVKIIDIRQ 134 (349)
Q Consensus 123 ~dg~i~i~d~~~ 134 (349)
.++.|.-|.+..
T Consensus 105 ~~~~v~R~~~~~ 116 (347)
T 3das_A 105 SDNRIVRMLYDE 116 (347)
T ss_dssp SSEEEEEEEBCT
T ss_pred CCCEEEEEEeCC
Confidence 344555565543
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.94 E-value=2.6 Score=35.87 Aligned_cols=63 Identities=5% Similarity=0.068 Sum_probs=38.4
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeecc------CcccceEEEEEccC---CCEEEEE
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN------YNKEEINQIVCNPK---SSFLACA 121 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~ 121 (349)
-.....|+|.|+|+++++-...+.|.+++..++.. ..+..+. ........|+|+|+ +..|...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 34567999999998666554445788887654432 2222221 12456779999995 4444433
No 345
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.42 E-value=4.6 Score=36.99 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=68.2
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-c-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-V-----GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 89 (349)
..|.++.-..+ +. |..|. ++-|..+|..+++...... . ....|.++...+++. |..|+..+-|..+|.++
T Consensus 373 ~~v~~i~~d~~-g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~ 448 (758)
T 3ott_A 373 NRIRHIYEDKE-QQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHK 448 (758)
T ss_dssp SCEEEEEECTT-SC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHH
T ss_pred CceEEEEECCC-CC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEcccc
Confidence 35888777665 44 44455 3569999988765432211 1 123577777766654 66677666688888652
Q ss_pred C-----Cccc---ceeeccC-cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe
Q 018858 90 P-----ASWR---PLESYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY 138 (349)
Q Consensus 90 ~-----~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 138 (349)
. .... ......+ ....|.++...+++...+.++..+-|..+|.++++..
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~ 506 (758)
T 3ott_A 449 LMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT 506 (758)
T ss_dssp HHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred ccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence 1 0000 0000000 1235888888888876653333445888998776543
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.14 E-value=4 Score=35.55 Aligned_cols=92 Identities=12% Similarity=0.154 Sum_probs=60.0
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeecCC-------------------------CCeE--EEEEe---cCCCEEEEEe-CC
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDVGN-------------------------GPVT--SLCFK---SGNEDIIYVS-SG 79 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~~~-------------------------~~v~--~~~~~---~~~~~l~~~~-~d 79 (349)
|.+|+..|.++|+-+.+++.+..+...+ +... .+.+. -+|++|+.-. ..
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 7789999999999999999888764321 1111 23332 2567777665 35
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEc--cCCCEEEEEcCC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCN--PKSSFLACADDG 124 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d 124 (349)
..|-..+++..++.+.+.. + +...+..+.+- |+..+++++++.
T Consensus 153 ~RvAri~l~~~~~d~Ii~i-P-n~~~~Hg~~~~~~p~T~yv~~~~e~ 197 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITV-P-NVQAIHGLRLQKVPHTKYVFANAEF 197 (638)
T ss_dssp TEEEEEETTTTEEEEEEEC-T-TCSCEEEEEECCSSBCCEEEEEECS
T ss_pred cceEEEECCcEeeceeEeC-C-CCcCcccccccccCCccEEEeccee
Confidence 6777788877655444433 2 23567777775 677888887763
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=91.92 E-value=2.2 Score=40.25 Aligned_cols=35 Identities=26% Similarity=0.138 Sum_probs=29.1
Q ss_pred ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 266 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 266 ~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
.+.++... ++..++++-+.|+++|+|++.+++...
T Consensus 237 ~~~~~~~~---~~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 237 TIISMIFL---STYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp CEEEEEEE---TTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred eEEEEeec---CCCcEEEEEECCCEEEEEECCCCCeEe
Confidence 45667666 788899999999999999999986543
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.51 E-value=5.1 Score=34.97 Aligned_cols=75 Identities=4% Similarity=-0.132 Sum_probs=51.4
Q ss_pred CeEEEEEecCCCEEEEEeC-CCeEEEEEccCC------Cc---ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEE
Q 018858 60 PVTSLCFKSGNEDIIYVSS-GKEVKSFDVHMP------AS---WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~------~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (349)
....+..+|+|++++.++. +.++.++|++.. +. ...+.....-.......+|.++|....+---|..|.-
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 3457888999999888775 679999999841 10 0111111112345678899999965566668999999
Q ss_pred EEcCC
Q 018858 130 IDIRQ 134 (349)
Q Consensus 130 ~d~~~ 134 (349)
|++..
T Consensus 404 Wni~~ 408 (638)
T 3sbq_A 404 WNMEE 408 (638)
T ss_dssp EEHHH
T ss_pred EeccH
Confidence 99864
No 349
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=90.20 E-value=6.1 Score=31.63 Aligned_cols=197 Identities=11% Similarity=0.088 Sum_probs=107.5
Q ss_pred CceEEEeCCCCcEEEEECCCCc-------EEEE--eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc-----
Q 018858 28 PGFVASSGEDGCICWFDLRSKD-------VQLV--TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW----- 93 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~-------~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----- 93 (349)
..++++.+.+|.|+--.+..-+ -+.. ++. ...+..+......+.++..+..|.++-+....-...
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 5678888899999877654321 1111 222 234555555556677888888998877765421000
Q ss_pred -cc---eeeccCcccceEEEEEcc---CCCEEEEEcCCCcEEEEEcCCc-------eEeceeccccccceeEEEEccCCC
Q 018858 94 -RP---LESYNYNKEEINQIVCNP---KSSFLACADDGGDVKIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 94 -~~---~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
.+ .-.+.. ...+..+...+ +..+++..+..|.++...+..- .....+. ..+.+-.+....
T Consensus 87 G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~--~~d~lv~~~~~~--- 160 (312)
T 1suu_A 87 GQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN--DKDFVTSAEIVF--- 160 (312)
T ss_dssp -CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC--TTCCEEEEEEEC---
T ss_pred CcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC--CCCEEEEEEEeC---
Confidence 00 111222 23444443332 4567888899999998877532 2222232 123333333322
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
.+..++..+.+|.+..+....-.....
T Consensus 161 ---------------------------------~~~~i~l~T~~G~~~r~~~~ev~~~gR-------------------- 187 (312)
T 1suu_A 161 ---------------------------------KDEKVICLSKKGSAFIFNSRDVRLTNR-------------------- 187 (312)
T ss_dssp ---------------------------------TTCEEEEEETTSEEEEEEGGGSCBCCT--------------------
T ss_pred ---------------------------------CCCEEEEEeCCCcEEEEEHHHccccCC--------------------
Confidence 345677888899998888764110000
Q ss_pred EEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.........+.. ...|..+... .++..+++.+..|..+..++...
T Consensus 188 -----------~~~Gv~~i~L~~-~d~vv~~~~v---~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 188 -----------GTQGVCGMKLKE-GDLFVKVLSV---KENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp -----------TBCCEECCCCCT-TCCEEEEEEC---TTCSEEEEEETTSEEEEEEGGGS
T ss_pred -----------CCCCeEeEEeCC-CCEEEEEEEE---CCCCeEEEEECCCceEEEEHHHh
Confidence 000111122332 2345555444 45567888888999999988664
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=89.63 E-value=6.7 Score=31.23 Aligned_cols=117 Identities=10% Similarity=0.216 Sum_probs=64.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCC--------------CCcEEEEECCCCcEEEEeecCCCCeEEEEEecC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGE--------------DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG 69 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~--------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (349)
.+...+.|... . +--++++ +++|+-+.. ...|+..+++..+...... .. ...|+++
T Consensus 45 dg~~~~~l~~~--~--~~~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~~ 114 (302)
T 3s25_A 45 DGSNIHKLSND--T--AMYINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASLI 114 (302)
T ss_dssp TSCSCEEEEEE--E--EEEEEEC-SSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEEE
T ss_pred CCCCCEEccCC--c--eeeEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEEe
Confidence 44445555432 2 3356777 556554433 2467777777665332222 11 2367888
Q ss_pred CCEEEEEe--CCC--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCcEEEEEcCCceEe
Q 018858 70 NEDIIYVS--SGK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQHCLY 138 (349)
Q Consensus 70 ~~~l~~~~--~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~ 138 (349)
++.|+... .++ .|...++... ..+.+.. + .+ .+++++++.|+-.+. ...|++.++..+...
T Consensus 115 g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~---~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~ 180 (302)
T 3s25_A 115 GNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKN---H--YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA 180 (302)
T ss_dssp TTEEEEEEESSSSCEEEEEEETTSC-CCEEEES---S--CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred CCEEEEEeecCCCCceEEEEECCCC-CeEEEeC---C--Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence 99988776 344 4555555532 2222222 1 12 356778877775554 677888888766543
No 351
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.35 E-value=4 Score=33.14 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.5
Q ss_pred CEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 116 SFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 116 ~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
..++.++.||.|+-+|.++|+.+.+++
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~ 37 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIE 37 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 478889999999999999999998887
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=87.10 E-value=10 Score=30.21 Aligned_cols=146 Identities=8% Similarity=0.083 Sum_probs=76.5
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC--------------CeEEEEEccCCCcccceeeccCc
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG--------------KEVKSFDVHMPASWRPLESYNYN 102 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~ 102 (349)
++.|+..+.+..... .+... .+--+++++++|+.+... ..|+..++...+ ...+..
T Consensus 36 ~~~ly~~~~dg~~~~-~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~-~~~l~~---- 105 (302)
T 3s25_A 36 NGRLYAMNIDGSNIH-KLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG-STVLDP---- 105 (302)
T ss_dssp TTEEEEEETTSCSCE-EEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC-CEEEEC----
T ss_pred CceEEEEcCCCCCCE-EccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc-ceEeec----
Confidence 466777776544432 22211 123457889998877643 356777776543 222222
Q ss_pred ccceEEEEEccCCCEEEEEc--C--CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCce
Q 018858 103 KEEINQIVCNPKSSFLACAD--D--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAF 178 (349)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~--~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (349)
.. ...|++++++|+-.. . ...|+..++.... ...+. .+.. .+++|
T Consensus 106 -~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt-~~~~----~~~~~---------------------- 154 (302)
T 3s25_A 106 -DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIK-NHYL----FTCNT---------------------- 154 (302)
T ss_dssp -SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEE-SSCC----CCSEE----------------------
T ss_pred -CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEe-CCCc----eEeeE----------------------
Confidence 11 236777888887665 2 3445555655332 23333 2221 23445
Q ss_pred eEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 179 VHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
+++.|.-.+ ....|...++............ . ..++.|++.+++.
T Consensus 155 --------------~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~----~-~~~~~P~g~~iy~ 200 (302)
T 3s25_A 155 --------------SDRYFYYNNPKNGQLYRYDTASQSEALFYDCN----C-YKPVVLDDTNVYY 200 (302)
T ss_dssp --------------ETTEEEEECTTTCCEEEEETTTTEEEEEECSC----E-EEEEEEETTEEEE
T ss_pred --------------ECCEEEEEeCCCceEEEEECCCCCEEEEeCCC----c-cceeeecCCEEEE
Confidence 455555444 4678888888765433332211 1 1235577777763
No 353
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=86.72 E-value=9.9 Score=29.77 Aligned_cols=206 Identities=14% Similarity=0.045 Sum_probs=105.5
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEE---ccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCC
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFD---VHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd---~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~ 134 (349)
..+..+.-....++|+.-+..|.++--. +..... ..+ +. ....|..+.... ++.+++..+.+|.++...+..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~-~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK-VSL--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEE-CCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcc-ccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHH
Confidence 3455554444556677777778665433 322211 112 32 234555553322 467899999999999988754
Q ss_pred ce------EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEE
Q 018858 135 HC------LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV 208 (349)
Q Consensus 135 ~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 208 (349)
-. ....++ ..+.+..+.... ....++..+..|.+..
T Consensus 100 ~~~~~~G~~~i~lk--egD~l~~~~~~~------------------------------------~~~~ill~T~~G~~~r 141 (276)
T 3no0_A 100 FEYKAQGMPIIKLT--EGDEVVSIASSV------------------------------------DETHILLFTKKGRVAR 141 (276)
T ss_dssp TTTCSTTEECSCCC--TTCCEEEEEECC------------------------------------SSCEEEEEETTSEEEE
T ss_pred hhhhcCCeEEEecC--CCCEEEEEEEeC------------------------------------CCCEEEEEECCCEEEE
Confidence 32 112222 223333333322 3456777788898888
Q ss_pred EEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC
Q 018858 209 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 288 (349)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d 288 (349)
++...-...... ........+.. ...|..+... +++.+++..+..
T Consensus 142 ~~~~eip~~gR~-------------------------------a~Gv~~i~L~~-~d~vv~~~~~---~~~~~ll~~T~~ 186 (276)
T 3no0_A 142 FSVREVPPSTPG-------------------------------ARGVQGIKLEK-NDETSGLRIW---NGEPYLLVITAK 186 (276)
T ss_dssp EEGGGSCBCCTT-------------------------------CCCEECCCCCT-TCCEEEEEEE---SSCSEEEEEETT
T ss_pred EEhhhCCCcCCC-------------------------------CCCEEEEccCC-CCEEEEEEEe---CCCCEEEEEeCC
Confidence 876542100000 00011112332 2455555554 456788888999
Q ss_pred CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEE
Q 018858 289 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 345 (349)
Q Consensus 289 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 345 (349)
|.++...+.......... +-+..+ ...+.+..+.... +.+.++..+.+|.+..
T Consensus 187 G~~kr~~~~e~~~~~R~g--kGv~~i-~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 187 GRVKKISHEEIPKTNRGV--KGTEVS-GTKDTLVDLIPIK-EEVELLITTKNGKAFY 239 (276)
T ss_dssp SCEEEEEGGGSCCCCTTC--CCEECC-CSSSCEEEEEEES-SEEEEEEEETTSCEEE
T ss_pred CcEEEeEHHHcccCCCCC--cceEEE-cCCCcEEEEEEeC-CCCEEEEEcCCCeEEE
Confidence 999988876543221111 111111 2234454443322 3335677777777665
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=86.32 E-value=12 Score=30.23 Aligned_cols=75 Identities=9% Similarity=-0.021 Sum_probs=46.1
Q ss_pred CCCeEEEEEec---CCCEEEEEeCCCeEEEEEccCCCcc----cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 58 NGPVTSLCFKS---GNEDIIYVSSGKEVKSFDVHMPASW----RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 58 ~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
...|..+...+ +..+++.++.+|.++.-.+..-... .....+.. .+.+..+........++..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 44565554333 5789999999999999887642111 11112222 2445555444455677778888888888
Q ss_pred EcC
Q 018858 131 DIR 133 (349)
Q Consensus 131 d~~ 133 (349)
...
T Consensus 173 ~~~ 175 (327)
T 3uc1_A 173 SAT 175 (327)
T ss_dssp ECC
T ss_pred ECc
Confidence 765
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.17 E-value=15 Score=31.33 Aligned_cols=107 Identities=14% Similarity=0.124 Sum_probs=58.0
Q ss_pred eeeEEEEecCCCc-eEEEeCCCCcEEEEECCCC---cEEEEee---------cCCCCeEEEEEecC----CCEEEEEeC-
Q 018858 17 TATCCIASRDRPG-FVASSGEDGCICWFDLRSK---DVQLVTD---------VGNGPVTSLCFKSG----NEDIIYVSS- 78 (349)
Q Consensus 17 ~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~---~~~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~- 78 (349)
.-+.|+|.|+ +. .|+.+...|.|++++.... ..+..+. ........|+++|+ +...++-+.
T Consensus 15 ~P~~~a~~pd-G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGD-GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSS-SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCC-CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899998 54 3444566799999975422 1122221 11457889999985 333333221
Q ss_pred -C----------CeEEEEEccCC--C-----cccceeecc--CcccceEEEEEccCCCEEEEEcCC
Q 018858 79 -G----------KEVKSFDVHMP--A-----SWRPLESYN--YNKEEINQIVCNPKSSFLACADDG 124 (349)
Q Consensus 79 -d----------g~i~iwd~~~~--~-----~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 124 (349)
+ ..|.-|.+..+ . ..+.+.... ........|+|.||+.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 14555666431 1 111221111 112345789999999777765543
No 356
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=86.09 E-value=13 Score=30.57 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=62.5
Q ss_pred cCCCceEEEeCCCCcEEEEECCC---------CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC---CC-
Q 018858 25 RDRPGFVASSGEDGCICWFDLRS---------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM---PA- 91 (349)
Q Consensus 25 ~~~~~~l~t~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~- 91 (349)
|+ ..++++.+.+|.|+--.+.. +.....++ ....+..+......+.|+..+..|.++-+.... ..
T Consensus 5 ~~-e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 AP-EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CC-CCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cC-CCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 44 67888899999998764321 22223333 344566666666677788888888777665432 10
Q ss_pred --ccccee---eccCcccceEEEE-Ecc--CCCEEEEEcCCCcEEEEEcC
Q 018858 92 --SWRPLE---SYNYNKEEINQIV-CNP--KSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 92 --~~~~~~---~~~~~~~~v~~~~-~~~--~~~~l~~~~~dg~i~i~d~~ 133 (349)
....+. .+.. ...|..+. ... ++.+|+.++..|.++...+.
T Consensus 83 ~a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~ 131 (370)
T 3l6v_A 83 NARGRPIINWIPLES-GERVQAVLPVREYADNRYVFMATRNGTVKKTPLS 131 (370)
T ss_dssp TSCCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred ccCCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHH
Confidence 011111 1222 23454443 322 35689999999999988865
No 357
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=85.99 E-value=12 Score=30.13 Aligned_cols=246 Identities=11% Similarity=0.042 Sum_probs=120.0
Q ss_pred ceEEEeCCCCcEEEEECCC-------CcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc---CCC---ccc
Q 018858 29 GFVASSGEDGCICWFDLRS-------KDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH---MPA---SWR 94 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~-------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~---~~~ 94 (349)
..+++.+.+|.|+--.+.+ ++-+..+.. ....+..+......+.|+.-+..|.++-.... ... ...
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 4667777778777654321 111111111 12345555555566677777778876655432 210 111
Q ss_pred ce---eeccCcccceEEE-EEcc--CCCEEEEEcCCCcEEEEEcCCce-------EeceeccccccceeEEEEccCCCCC
Q 018858 95 PL---ESYNYNKEEINQI-VCNP--KSSFLACADDGGDVKIIDIRQHC-------LYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 95 ~~---~~~~~~~~~v~~~-~~~~--~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
++ -.+.. ...|..+ ...+ +..+++..+.+|.++...+..-. ....++ ..+.+..+....
T Consensus 84 ~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk--e~D~lv~~~~~~----- 155 (327)
T 3uc1_A 84 HVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR--DNDELVGAVLCS----- 155 (327)
T ss_dssp EHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC--TTCCEEEEEEEC-----
T ss_pred EHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC--CCCEEEEEEEec-----
Confidence 11 11222 2344444 4432 46899999999999988875422 122233 223333333322
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
....++..+..|.+..+.....+.+..... .
T Consensus 156 -------------------------------~~d~ill~T~~G~~~rf~~~~~eip~~gr~------------a------ 186 (327)
T 3uc1_A 156 -------------------------------AGDDLLLVSANGQSIRFSATDEALRPMGRA------------T------ 186 (327)
T ss_dssp -------------------------------TTCEEEEEETTSEEEEEECCTTTSCCCCTT------------S------
T ss_pred -------------------------------CCCEEEEEECCCeEEEEECcccccCcCCcC------------C------
Confidence 345677777889888887762110000000 0
Q ss_pred EeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 242 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
.......+.. ...|.++... +++.+++..+..|.++.-.+.................+..-.+.+
T Consensus 187 -----------~Gv~~i~L~~-~d~Vv~~~~~---~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~l 251 (327)
T 3uc1_A 187 -----------SGVQGMRFNI-DDRLLSLNVV---REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRL 251 (327)
T ss_dssp -----------BCEESSCCCT-TCCEEEEEEC---CTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSE
T ss_pred -----------CCeeeecCCC-CCEEEEEEEE---CCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeE
Confidence 0011112322 3456666555 456688889999999888876543221111111111121213345
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..+.... +.+.++..+.+|.+.-++
T Consensus 252 v~~~~~~-~~~~i~l~T~~G~~ir~~ 276 (327)
T 3uc1_A 252 VGALIVD-DDSELYAVTSGGGVIRTA 276 (327)
T ss_dssp EEEEEEC-TTCEEEEEEGGGCEEEEE
T ss_pred EEEEEeC-CCccEEEEcCCCeEEEEe
Confidence 4444333 333566666676655544
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.12 E-value=1.5 Score=42.35 Aligned_cols=35 Identities=26% Similarity=0.138 Sum_probs=28.0
Q ss_pred ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 266 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 266 ~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
.+.++... ++..++++-+.|+++|||++.++..+.
T Consensus 239 ~~vs~~~~---~~~~~lftL~~D~~LRiWsl~t~~~v~ 273 (1139)
T 4fhn_B 239 TIISMIFL---STYNVLVMLSLDYKLKVLDLSTNQCVE 273 (1139)
T ss_dssp CBSCCEEE---TTTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred eeEEeecc---CCccEEEEEeCCCEEEEEECCCCCeEE
Confidence 34455555 688999999999999999999986553
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.91 E-value=21 Score=30.41 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=35.3
Q ss_pred CCeEEEEEecCCC-EEEEEeCCCeEEEEEccCCCcccceeecc---------CcccceEEEEEccC
Q 018858 59 GPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPASWRPLESYN---------YNKEEINQIVCNPK 114 (349)
Q Consensus 59 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~ 114 (349)
.....|+|.|++. .|+++...|.|++++.........+..+. ........|+++|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3467899999996 56677788999999753221111111111 11356788999996
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.80 E-value=9.6 Score=36.05 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=32.4
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 105 EINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.+.+++..++..++++-+.|+.+|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45677777888899999999999999999999887654
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=78.25 E-value=22 Score=27.75 Aligned_cols=123 Identities=9% Similarity=0.062 Sum_probs=68.6
Q ss_pred CeeeeCCc---eeeeEEEEecCCCceEEEeCCCCcEEE---EECCCCcEEEEeecCCCCeEEEEEec-CCCEEEEEeCCC
Q 018858 8 PRRLRGHK---ATATCCIASRDRPGFVASSGEDGCICW---FDLRSKDVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGK 80 (349)
Q Consensus 8 ~~~l~~h~---~~i~~~~~~~~~~~~l~t~~~dg~i~v---wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 80 (349)
++..++|. +.+..+..... ..+|+.-+.+|.++- |++........+. ....|..+.... +..+++..+.+|
T Consensus 13 ir~~~g~~~~gD~~~~~~~~~t-~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G 90 (276)
T 3no0_A 13 IIPVEELPLEKAPVVNILRVPF-TEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKG 90 (276)
T ss_dssp EEEGGGCCSSCCCEEEEEEEET-TSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTS
T ss_pred eeeccCCCCCCCeEEEEEEECC-CCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCC
Confidence 45556653 34555554444 345555566777664 3333221111133 355666654421 567899999999
Q ss_pred eEEEEEccCCC-c--ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 81 EVKSFDVHMPA-S--WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 81 ~i~iwd~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
.++...+..-. . ......+.. .+.+..+........++..+..|.+..+...
T Consensus 91 ~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~ 145 (276)
T 3no0_A 91 YVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVR 145 (276)
T ss_dssp EEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGG
T ss_pred EEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhh
Confidence 99999876421 0 001111222 2455555555555678888888988888764
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=77.68 E-value=23 Score=27.69 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=34.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEEccCC-CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
.|..++.... +.+... ||.|..|-.... +...+.. ....|..++.... ..++. . ||.|+.|-..
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~----~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n 89 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAA----TQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGN 89 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGG----GGSCCCEEEECSS-EEEEE-E-TTEEEEEECC
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCcc----CCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCC
Confidence 5666665432 333335 899999976542 2111111 1235666766433 33344 4 8999999755
No 363
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=76.80 E-value=26 Score=27.84 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=56.5
Q ss_pred CceEEEeCCCCcEEEEECCCCcEE---------EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC---CC---c
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQ---------LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM---PA---S 92 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~---~ 92 (349)
..++++.+.+|.|+--.+.+-+.. ..++. ...+..+......+.|+..+..|.++-+.... .. .
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 467888888999887766532211 11222 23444454555667788888888876665432 11 1
Q ss_pred cccee---eccCcccceEEEEE-c--cCCCEEEEEcCCCcEEEEEcC
Q 018858 93 WRPLE---SYNYNKEEINQIVC-N--PKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 93 ~~~~~---~~~~~~~~v~~~~~-~--~~~~~l~~~~~dg~i~i~d~~ 133 (349)
..++. .+. ....|..+.. . +++.+++..+..|.++...+.
T Consensus 82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~ 127 (307)
T 1zi0_A 82 GRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 127 (307)
T ss_dssp CEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred CeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHH
Confidence 11111 122 2234544433 2 345678888999999988765
No 364
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=75.45 E-value=30 Score=27.79 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=57.9
Q ss_pred CceEEEeCCCCcEEEEECCC----CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC---CC---ccccee
Q 018858 28 PGFVASSGEDGCICWFDLRS----KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM---PA---SWRPLE 97 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~---~~~~~~ 97 (349)
..++++.+.+|.|+--.+.. +.....++. ...+..+......+.|+..+..|.+.-+.... .. ...++.
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~ 83 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIA 83 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGG
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChh
Confidence 56778888888887665431 111112222 23454555555667788888888776665532 11 111111
Q ss_pred ---eccCcccceEEE-EEcc--CCCEEEEEcCCCcEEEEEcC
Q 018858 98 ---SYNYNKEEINQI-VCNP--KSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 98 ---~~~~~~~~v~~~-~~~~--~~~~l~~~~~dg~i~i~d~~ 133 (349)
.+.. ...|..+ ...+ ++.+++..+.+|.++...+.
T Consensus 84 ~~i~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~ 124 (323)
T 1wp5_A 84 NIIPIDR-DEEIIKAIPINDFELNGYFLFVTRNGMVKKTELK 124 (323)
T ss_dssp GTSCCCT-TCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGG
T ss_pred hccCCCC-CCEEEEEEEecccCCCceEEEEeCCCeEEEeEHH
Confidence 1221 2345443 3332 25678889999999988875
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.25 E-value=9.2 Score=37.02 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=30.5
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
+.+++..++..++++-+.|+.+|+|++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4455666777899999999999999999998877654
No 366
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=73.43 E-value=38 Score=27.99 Aligned_cols=85 Identities=11% Similarity=0.029 Sum_probs=52.4
Q ss_pred cEEEEECCCC--cEEEEeecC------CCCeEEEEEe---cC----CCEEEEEe-CCCeEEEEEccCCCcccceeeccCc
Q 018858 39 CICWFDLRSK--DVQLVTDVG------NGPVTSLCFK---SG----NEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYN 102 (349)
Q Consensus 39 ~i~vwd~~~~--~~~~~~~~~------~~~v~~~~~~---~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 102 (349)
.|.+||+.+. +.++.+.-. ...+..+++. |. +.++..+. ....|.|+|+.+++..+.+......
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5889999999 888776542 3457778887 22 23333332 3578999999987655544211100
Q ss_pred ---------------ccceEEEEEccC----CCEEEEEcC
Q 018858 103 ---------------KEEINQIVCNPK----SSFLACADD 123 (349)
Q Consensus 103 ---------------~~~v~~~~~~~~----~~~l~~~~~ 123 (349)
...+..++++|+ ++.|....-
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl 243 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG 243 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC
Confidence 135677788876 555554443
No 367
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=73.02 E-value=59 Score=30.03 Aligned_cols=111 Identities=9% Similarity=0.050 Sum_probs=59.3
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC-------CCCeEEEEEecC-CCEEEEEeCCCe----E
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-------NGPVTSLCFKSG-NEDIIYVSSGKE----V 82 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~-~~~l~~~~~dg~----i 82 (349)
.+.|.+|+++|.+...++.++..+.|...+ +.++.-..+..+ ...+.++++.|. .+.++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 458999999997667778777777766655 234432223222 246999999984 344544432211 2
Q ss_pred EEEEc-cCCCcccceee-cc-----CcccceEEEEEccCC-CEEEEEcCCCc
Q 018858 83 KSFDV-HMPASWRPLES-YN-----YNKEEINQIVCNPKS-SFLACADDGGD 126 (349)
Q Consensus 83 ~iwd~-~~~~~~~~~~~-~~-----~~~~~v~~~~~~~~~-~~l~~~~~dg~ 126 (349)
.||.- ..++....+.. +. .....+..++++|.. ..++.+...+.
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g 144 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG 144 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC
Confidence 33332 33433333321 00 001134567888753 55666654443
No 368
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=72.70 E-value=35 Score=27.37 Aligned_cols=210 Identities=10% Similarity=0.027 Sum_probs=102.4
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC---------ceE
Q 018858 68 SGNEDIIYVSSGKEVKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---------HCL 137 (349)
Q Consensus 68 ~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~ 137 (349)
|+..++++.+.+|.|+--.+..-+.. ..-..+.. .+.+..+........++..+..|.++-+.... |.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 56778899999999987765421000 00011222 23444444444556677777778776665421 221
Q ss_pred ece-eccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 138 YKS-LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 138 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
+.. +.......|.++..-+ + + .++.+++..+.+|.++-..+..-..
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~-----------------------------~--~--~~~~~ll~~T~~G~iKrt~l~e~~~ 128 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPIN-----------------------------D--F--ELNGYFLFVTRNGMVKKTELKHYKA 128 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEES-----------------------------C--T--TSSCEEEEEETTSEEEEEEGGGGCC
T ss_pred hhhccCCCCCCEEEEEEEec-----------------------------c--c--CCCceEEEEeCCCeEEEeEHHHhhh
Confidence 111 1101112222221111 0 0 0256788889999999988864211
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEec
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 296 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~ 296 (349)
... ........+... ..+-.+... .....++..+.+|.+..++.
T Consensus 129 ~~r--------------------------------~~G~~ai~l~e~-d~lv~~~~~---~~~~~i~l~T~~G~~irf~~ 172 (323)
T 1wp5_A 129 QRY--------------------------------SKPLTGINLKND-DQVVDVHLT---DGMNELFLVTHNGYALWFDE 172 (323)
T ss_dssp SCC--------------------------------SSCEECSCCCTT-CCEEEEEEE---CSCSEEEEEETTSEEEEEEG
T ss_pred ccc--------------------------------cCceEEEEeCCC-CEEEEEEEe---CCCCEEEEEeCCCcEEEEEH
Confidence 000 000111123222 344444444 34456777777888888877
Q ss_pred CCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 297 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..-..............+ .-.+.|.++...+.+...|++.+..|..+.-++
T Consensus 173 ~ev~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~ 223 (323)
T 1wp5_A 173 SEVSIVGVRAAGVKGMNL-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKL 223 (323)
T ss_dssp GGSCBCCSSCCCEECCCC-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred HHCcccCCCCcCEEEEEe-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEH
Confidence 543211111111111111 234456666554433226888888887665443
No 369
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=72.11 E-value=40 Score=27.73 Aligned_cols=100 Identities=5% Similarity=-0.007 Sum_probs=49.0
Q ss_pred ceEEEeCCCCcEEEEECCC-CcEEEEe--ecCCCCeEEEEEec-CCCEEEEEeCCC----eEEEEEccCCCcccceee--
Q 018858 29 GFVASSGEDGCICWFDLRS-KDVQLVT--DVGNGPVTSLCFKS-GNEDIIYVSSGK----EVKSFDVHMPASWRPLES-- 98 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~-- 98 (349)
..|+.|...| +.+++... ++.-..+ ......|.+|++.| +...|.+++..| .|... ...++....+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccc
Confidence 4677777666 55555432 2221111 12345799999998 334455555444 34332 222333332221
Q ss_pred -ccC--------cccceEEEEEccC--CCEEEEEcCCCcEEEE
Q 018858 99 -YNY--------NKEEINQIVCNPK--SSFLACADDGGDVKII 130 (349)
Q Consensus 99 -~~~--------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~ 130 (349)
+.. ....|.++++.|. ...+.++...+.|...
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 111 1124778888862 4556666555555444
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=68.59 E-value=43 Score=26.69 Aligned_cols=209 Identities=8% Similarity=0.054 Sum_probs=104.1
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCCccc----cee--eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC------
Q 018858 67 KSGNEDIIYVSSGKEVKSFDVHMPASWR----PLE--SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ------ 134 (349)
Q Consensus 67 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------ 134 (349)
-++..++++.+.+|.|+--.+..-+... -+. .+.. .+.+..+........++..+..|.++-+....
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 3567788999999999988765421110 011 1121 23444444444555677777778777665431
Q ss_pred ---ceEec-eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 135 ---HCLYK-SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 135 ---~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
|..+. .++......|.++...++ + .+..+++..+..|.++...
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~--------------------------~-------~~~~~ll~~T~~G~~kr~~ 130 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKD--------------------------L-------TDDAYLLLTTASGKIARFE 130 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESC--------------------------C-------CTTCEEEEEETTSEEEEEE
T ss_pred cCCCcChhhccCCCCCCEEEEEEEecc--------------------------C-------CCCCEEEEEeCCCeEEEEE
Confidence 11100 011011122222211110 0 0346677888999998888
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCe
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~ 290 (349)
+..-.... ........+.. ...+..+... .++..++..+.+|.
T Consensus 131 l~~~~~~r---------------------------------~~G~~~i~L~~-~d~lv~~~~~---~~~~~i~l~T~~G~ 173 (312)
T 1suu_A 131 STDFKAVK---------------------------------SRGVIVIKLND-KDFVTSAEIV---FKDEKVICLSKKGS 173 (312)
T ss_dssp GGGGCC-------------------------------------CEECBCCCT-TCCEEEEEEE---CTTCEEEEEETTSE
T ss_pred HHHhhccC---------------------------------CCcEEEEecCC-CCEEEEEEEe---CCCCEEEEEeCCCc
Confidence 76521100 00111123333 3445555444 34556777888899
Q ss_pred EEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 291 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 291 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+..+....-..............+. ..+.|.++...+ ++..+++.+..|..+..++
T Consensus 174 ~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 174 AFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVK-ENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECT-TCSEEEEEETTSEEEEEEG
T ss_pred EEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEEC-CCCeEEEEECCCceEEEEH
Confidence 9888876532211111111111222 244566655544 4456888888888877654
No 371
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=67.76 E-value=74 Score=29.06 Aligned_cols=106 Identities=8% Similarity=0.054 Sum_probs=58.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC-------CCCeEEEEEec-CCCEEEEEeCC-------Ce
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-------NGPVTSLCFKS-GNEDIIYVSSG-------KE 81 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~l~~~~~d-------g~ 81 (349)
.|..++++|.+...++.+...+.|...+- .++.-..+..+ ...|.+|++.| +.+.++++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999986677777776677666653 23332223221 24588999998 34455544321 12
Q ss_pred EEEEEcc-CCCcccceee-cc--C---cccceEEEEEccCC-CEEEEEcC
Q 018858 82 VKSFDVH-MPASWRPLES-YN--Y---NKEEINQIVCNPKS-SFLACADD 123 (349)
Q Consensus 82 i~iwd~~-~~~~~~~~~~-~~--~---~~~~v~~~~~~~~~-~~l~~~~~ 123 (349)
..||.-. .++....+.. +. . ....+..|+++|.. ..++.+..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 4455443 3444433322 11 0 00124678888853 56666663
No 372
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=62.11 E-value=66 Score=26.50 Aligned_cols=77 Identities=12% Similarity=0.039 Sum_probs=40.6
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccccc--ceeeeccc-cccceEEEEeecCCCCcEEEeeCCC
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN--DLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSK 341 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg 341 (349)
..|..++.. ......+.-..||.|+.|-.....+....... ........ ....|..++.-. .+.++...||
T Consensus 211 ~~v~~ia~G---~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~---~hs~alt~~G 284 (389)
T 3kci_A 211 HRVVDIACG---SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS---QFSVALTKSG 284 (389)
T ss_dssp SCEEEEEEC---CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET---TEEEEEETTS
T ss_pred CeEEEEEEc---CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC---CEEEEEeCCC
Confidence 356667654 32356666778999999976543222110000 01111111 122466666533 2556667889
Q ss_pred eEEEee
Q 018858 342 VVKVYS 347 (349)
Q Consensus 342 ~i~iw~ 347 (349)
.|+.|-
T Consensus 285 ~v~~wG 290 (389)
T 3kci_A 285 AVYTWG 290 (389)
T ss_dssp CEEEEE
T ss_pred eEEEEe
Confidence 998884
No 373
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.50 E-value=17 Score=32.88 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=29.3
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 105 EINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.|.++.+ +..++++-+.|+.+|+|++++++++.+..
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 3555444 46799999999999999999999887766
No 374
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.10 E-value=16 Score=32.95 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=29.3
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV 56 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 56 (349)
.|.|+.+ + ..++++-+.|.++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~--~-~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--H-ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--T-TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--C-CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555444 3 57999999999999999999998776654
No 375
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=56.50 E-value=55 Score=28.94 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=38.2
Q ss_pred eEEEEecCCCceEEEeCCC------------CcEEEEECCCCcEEEEeecC-CCCeEEEEEecCCCEEEEE
Q 018858 19 TCCIASRDRPGFVASSGED------------GCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYV 76 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~d------------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 76 (349)
--|.|+|. +.+++.-..+ ..+.+.+..+++....+..+ ...++.++|+|+++.|++.
T Consensus 479 DNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45788888 6655543321 23555566677776555554 4689999999999887765
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=53.63 E-value=68 Score=28.23 Aligned_cols=60 Identities=8% Similarity=0.073 Sum_probs=40.5
Q ss_pred eeeEEEEecCCCceEE-EeCC-----------CCcEEEEECCCCcEEEEeecC-CCCeEEEEEecCCCEEEEEe
Q 018858 17 TATCCIASRDRPGFVA-SSGE-----------DGCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~-t~~~-----------dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 77 (349)
.-..|.|.++ |.+.+ |=.. ...+..++..+++....+... ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4566889988 66666 3211 125666676677766555543 35689999999999887764
No 377
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=48.63 E-value=1.1e+02 Score=25.16 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=16.5
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.++..+.+|.+.++--....|..|+.
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~ 304 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNT 304 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEET
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeC
Confidence 44554446655555567788888874
No 378
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.60 E-value=88 Score=27.68 Aligned_cols=51 Identities=8% Similarity=0.090 Sum_probs=33.4
Q ss_pred eEEEEEccCCCEEEEEcCC------------CcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 106 INQIVCNPKSSFLACADDG------------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 106 v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.--|+|+|.|++++.-..+ ..+.+.+..+++..+-+.......++.++|+|
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp 540 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC
Confidence 4568999999866654322 23555666667665555423456788899998
No 379
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=42.88 E-value=1.4e+02 Score=24.52 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=37.6
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCC------cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEc
Q 018858 66 FKSGNEDIIYVSSGKEVKSFDVHMPA------SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI 132 (349)
Q Consensus 66 ~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 132 (349)
+-|+..++++.+.+|.|+--.+.+-. ....-..+. ..+.+..+........++..+..|.++-+..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEH
Confidence 34778899999999999977654210 001111122 1344555555445566666667777665543
No 380
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=41.72 E-value=1.4e+02 Score=24.40 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=54.9
Q ss_pred ceEEEeCCCCcEEEEECCCC--------c---EEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC-Cc---
Q 018858 29 GFVASSGEDGCICWFDLRSK--------D---VQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-AS--- 92 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~--------~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~--- 92 (349)
...+.-..||.|+.|-.... + ....+.. ....+..++++....+.+....+|.|+.|-.... +.
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 34445566888999864321 1 1111221 2334555667666677777788999999965321 10
Q ss_pred ----ccceeeccC-cccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 93 ----WRPLESYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 93 ----~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
......... ....|..++.. ..+.+.-..+|.|+.|-..
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n 186 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKG 186 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECC
T ss_pred CCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCC
Confidence 000011110 11245555543 3455556678999999753
No 381
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=37.51 E-value=1.3e+02 Score=26.22 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=40.9
Q ss_pred CeEEEEEecCC--CEEEEEeCCCeEEEEEccCCCcc-cceeec--cCcccceE-EEEEccCCCEEEEEcCCCcEEE
Q 018858 60 PVTSLCFKSGN--EDIIYVSSGKEVKSFDVHMPASW-RPLESY--NYNKEEIN-QIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 60 ~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~--~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i 129 (349)
..+.++....+ ..++.|+.+|.|.-..+...... ..+..+ .....+|. .|.++++..+|++++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 45556555433 34677888998766555432111 122222 11235674 8889998899999888765443
No 382
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=37.43 E-value=2e+02 Score=25.39 Aligned_cols=53 Identities=8% Similarity=0.095 Sum_probs=32.4
Q ss_pred cceEEEEEccCCCEEEEEcC------------CCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 104 EEINQIVCNPKSSFLACADD------------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.....|.|.++|.+.+.... ...+..++..++++...+.......++.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC
Confidence 34567899999876663221 124666666667655444311235678888888
No 383
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=34.53 E-value=1.2e+02 Score=26.09 Aligned_cols=68 Identities=7% Similarity=-0.001 Sum_probs=42.9
Q ss_pred eeeEEEEecC----C-CceEEEeCCCCcEEEEECC-CCc-------EEEEeec--CCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 17 TATCCIASRD----R-PGFVASSGEDGCICWFDLR-SKD-------VQLVTDV--GNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 17 ~i~~~~~~~~----~-~~~l~t~~~dg~i~vwd~~-~~~-------~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
..++|+...- + -..++.|..+|.|.-.-+. .+. .+..+.. ...+|..|.++++.++|.+++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4566665431 1 2357788889987544332 211 2233332 3578999999999999999998876
Q ss_pred EEE
Q 018858 82 VKS 84 (349)
Q Consensus 82 i~i 84 (349)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 384
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=32.80 E-value=1.3e+02 Score=26.34 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=43.3
Q ss_pred eeeEEEEecCC-CceEEEeCCCCcEEEEECCCC----cEEEEeec--CCCCeE-EEEEecCCCEEEEEeCCCeEEE
Q 018858 17 TATCCIASRDR-PGFVASSGEDGCICWFDLRSK----DVQLVTDV--GNGPVT-SLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 17 ~i~~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~--~~~~v~-~~~~~~~~~~l~~~~~dg~i~i 84 (349)
..++++....+ -..++.|..+|.|.-..+... ..+..+.. ...+|. .|.+++++.+|++++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 46666665531 345778888998865554322 12333332 346785 8999999999999887765544
No 385
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=32.02 E-value=1.7e+02 Score=22.39 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=52.1
Q ss_pred eEEEeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC---CC-cccce---eeccC
Q 018858 30 FVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM---PA-SWRPL---ESYNY 101 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~-~~~~~---~~~~~ 101 (349)
.+++.+.+|.|+--....-.. ...++.. ..+..+......+.|+..+..|.++-+.... .. ...++ -.+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 344555566665444322110 0012222 3344444444555677778888776665432 11 01111 1122
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
....|..+....++.+++..+..|.++...+.
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~ 113 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFN 113 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHH
Confidence 13456555433456678888999999988875
No 386
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=31.62 E-value=2.9e+02 Score=24.92 Aligned_cols=56 Identities=4% Similarity=0.032 Sum_probs=37.0
Q ss_pred ceEEEeCCCCcEE-EEECCCCc-------EEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 29 GFVASSGEDGCIC-WFDLRSKD-------VQLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 29 ~~l~t~~~dg~i~-vwd~~~~~-------~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
..++.|..+|.|. +....... .+..++ ....+|..|.++++.++|++++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 3577888899874 33222111 122222 25678999999999999999998876655
No 387
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=30.88 E-value=3.1e+02 Score=24.97 Aligned_cols=32 Identities=3% Similarity=0.111 Sum_probs=20.4
Q ss_pred CcceEEEEEeeecCCccEEEEeeCCCe--EEEEecCCC
Q 018858 264 TAAASCVAFSMFGERGKYLISGGNDKL--VKVWDCSRF 299 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d~~--i~vwd~~~~ 299 (349)
...+..+.+. . +.++++...++. |+++++.++
T Consensus 349 ~~~l~~~~~~---~-~~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 349 NEVFNFISTT---K-DRVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp TEEEEEEEEC---S-SCEEEEEEETTEEEEEEECEETT
T ss_pred CCeEEEEEEE---C-CEEEEEEEECCEEEEEEEECCCC
Confidence 3456777776 4 456777766654 667776554
No 388
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=29.29 E-value=2.4e+02 Score=24.98 Aligned_cols=56 Identities=5% Similarity=0.017 Sum_probs=37.7
Q ss_pred ceEEEeCCCCcEEEEECC-CC----c-EEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 29 GFVASSGEDGCICWFDLR-SK----D-VQLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~-~~----~-~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
..++.|..+|.|.-.-+. .+ . .+..+. ....+|..+.++++...|.+++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 467788889988644332 22 1 123333 24578999999999999999988776655
No 389
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=27.85 E-value=2.9e+02 Score=24.96 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=15.8
Q ss_pred CcceEEEEEeeecCCccEEEEeeCCCeEEE
Q 018858 264 TAAASCVAFSMFGERGKYLISGGNDKLVKV 293 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d~~i~v 293 (349)
..+|..+.++ ++...|+.++.++.++|
T Consensus 469 ~~pI~~L~ld---~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 469 PTTISAMELS---TKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp CCCCCEEEEE---TTTTEEEEEBSSCEEEE
T ss_pred CceeeeEEEc---CCCCEEEEEECCEEEEE
Confidence 3456666666 56666666666554444
No 390
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=27.40 E-value=2.3e+02 Score=24.34 Aligned_cols=69 Identities=12% Similarity=0.049 Sum_probs=40.1
Q ss_pred eEEEEEec----CCC--EEEEEeCCCeEEEEEccCCC-----cccceeeccC--cccceEEEEEccCCCEEEEEcCCCcE
Q 018858 61 VTSLCFKS----GNE--DIIYVSSGKEVKSFDVHMPA-----SWRPLESYNY--NKEEINQIVCNPKSSFLACADDGGDV 127 (349)
Q Consensus 61 v~~~~~~~----~~~--~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (349)
.+.|+... +++ .++.|+.+|.|.-.-+.... ....+..+.. ...+|..|.++++..+|.+++.++.+
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~ 485 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 485 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEE
Confidence 46665542 233 36678888876544332211 0112222221 24678999999999999999988765
Q ss_pred EE
Q 018858 128 KI 129 (349)
Q Consensus 128 ~i 129 (349)
+|
T Consensus 486 ~v 487 (495)
T 1q47_A 486 QL 487 (495)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 391
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=25.36 E-value=2.9e+02 Score=22.79 Aligned_cols=75 Identities=12% Similarity=0.064 Sum_probs=40.4
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc---cceeeeccccccceEEEEeecCCCCcEEEeeCCC
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN---NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK 341 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 341 (349)
..|..++.- ....+.-..||.|+.|-.....+...... ..+..........|..++. .....++...||
T Consensus 277 ~~v~~i~~G-----~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~---G~~hs~alt~~G 348 (406)
T 4d9s_A 277 SFISQISGG-----WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSC---GWRHTLAVTERN 348 (406)
T ss_dssp SCEEEEEEC-----SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEE---CSSEEEEEETTS
T ss_pred CCEEEEEec-----CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEe---CCCeEEEEeCCC
Confidence 346666643 34455556789999997665433211000 0111111122345666665 333566667889
Q ss_pred eEEEee
Q 018858 342 VVKVYS 347 (349)
Q Consensus 342 ~i~iw~ 347 (349)
.|+.|=
T Consensus 349 ~v~~wG 354 (406)
T 4d9s_A 349 NVFAWG 354 (406)
T ss_dssp CEEEEE
T ss_pred CEEEec
Confidence 999884
No 392
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=24.03 E-value=2.8e+02 Score=25.02 Aligned_cols=57 Identities=9% Similarity=0.192 Sum_probs=34.8
Q ss_pred EEEEEeCCCeEEEE-EccCCC-cccceeeccCcccceEEEEEccCC--CEEEEEcCCCcEEE
Q 018858 72 DIIYVSSGKEVKSF-DVHMPA-SWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKI 129 (349)
Q Consensus 72 ~l~~~~~dg~i~iw-d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i 129 (349)
.++.|+.+|.|.-. ...... ....+..+. ...+|..|.++++. .+|++++.++.+++
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~-~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQ-DFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCT-TCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccC-CCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 57778888877543 333211 111122222 23578889999887 88998888775554
No 393
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=22.36 E-value=4.6e+02 Score=24.14 Aligned_cols=107 Identities=6% Similarity=0.078 Sum_probs=52.1
Q ss_pred eeeeEEEEecCCCceEEEeCCCCc----EEEEE-CCCCcEEEEeecC---------CCCeEEEEEecC-CCEEEEEeCCC
Q 018858 16 ATATCCIASRDRPGFVASSGEDGC----ICWFD-LRSKDVQLVTDVG---------NGPVTSLCFKSG-NEDIIYVSSGK 80 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~----i~vwd-~~~~~~~~~~~~~---------~~~v~~~~~~~~-~~~l~~~~~dg 80 (349)
..|.++++.|.+...++.+..+.. -.||. .+.++.-..+... ...+..+++.|. .+.++.+...+
T Consensus 64 ~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~ 143 (789)
T 1sqj_A 64 MGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTE 143 (789)
T ss_dssp CSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSS
T ss_pred CceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccC
Confidence 469999999854455544432211 33443 3334432222210 013556788874 34555555344
Q ss_pred eEEEEEcc-CCCcccceeecc---CcccceEEEEEccC-CCEEEEEcCC
Q 018858 81 EVKSFDVH-MPASWRPLESYN---YNKEEINQIVCNPK-SSFLACADDG 124 (349)
Q Consensus 81 ~i~iwd~~-~~~~~~~~~~~~---~~~~~v~~~~~~~~-~~~l~~~~~d 124 (349)
. ||.-. .++....+.... .....+..+.++|. +..++++..+
T Consensus 144 g--l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 144 G--IWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp C--EEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred C--EEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 3 33332 344444333211 11245788888884 3455555544
No 394
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=21.25 E-value=4.2e+02 Score=23.29 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=43.3
Q ss_pred eeeEEEEecC-----CCceEEEeCCCCcEE-EEECCC------Cc-EEEEeec-----------CCCCeEEEEEecCCCE
Q 018858 17 TATCCIASRD-----RPGFVASSGEDGCIC-WFDLRS------KD-VQLVTDV-----------GNGPVTSLCFKSGNED 72 (349)
Q Consensus 17 ~i~~~~~~~~-----~~~~l~t~~~dg~i~-vwd~~~------~~-~~~~~~~-----------~~~~v~~~~~~~~~~~ 72 (349)
..+.|++... +-..++.|..+|.|. +..... .. .+..++. ...+|..+.++++...
T Consensus 404 ~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~ 483 (565)
T 3oky_B 404 RLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGS 483 (565)
T ss_dssp CEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTE
T ss_pred ceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCE
Confidence 4567777642 124577888899874 443221 11 2223322 2467889999999999
Q ss_pred EEEEeCCCeEEE
Q 018858 73 IIYVSSGKEVKS 84 (349)
Q Consensus 73 l~~~~~dg~i~i 84 (349)
|.+++.++.++|
T Consensus 484 LYV~s~~~V~qV 495 (565)
T 3oky_B 484 LYVAFSTCVIKV 495 (565)
T ss_dssp EEEECSSCEEEE
T ss_pred EEEEecCeEEEe
Confidence 999998887665
Done!