Query 018859
Match_columns 349
No_of_seqs 16 out of 18
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 07:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dgw_Y Canavalin; duplicated s 69.6 1.4 4.9E-05 34.6 1.0 17 230-246 14-30 (93)
2 3rdy_A BWI-1=protease inhibito 49.2 9.9 0.00034 29.3 2.5 23 213-235 44-67 (79)
3 1mit_A RCMTI-V, trypsin inhibi 45.4 13 0.00044 27.4 2.5 21 212-232 33-53 (69)
4 1cq4_A Protein (serine protein 42.5 9.8 0.00034 26.4 1.4 18 213-230 29-46 (47)
5 1vbw_A Trypsin inhibitor BGIT; 41.4 16 0.00055 26.7 2.5 47 174-233 7-53 (68)
6 2ci2_I Chymotrypsin inhibitor 36.0 22 0.00074 27.1 2.5 22 212-233 47-68 (83)
7 2okm_A Collagen adhesin; colla 33.2 12 0.00041 32.2 0.8 21 211-234 3-23 (147)
8 3s8f_B Cytochrome C oxidase su 31.4 1E+02 0.0035 26.0 6.2 29 160-188 61-92 (168)
9 1dwm_A LUTI, linum usitatissin 31.1 30 0.001 25.2 2.5 21 213-233 35-55 (70)
10 2dw3_A Intrinsic membrane prot 31.0 25 0.00086 27.7 2.2 38 79-124 13-50 (77)
11 1to2_I Chymotrypsin inhibitor 29.7 16 0.00054 26.5 0.8 22 212-233 28-49 (64)
12 1cse_I Eglin C; complex(serine 29.7 22 0.00074 26.2 1.6 21 213-233 34-54 (70)
13 2ks1_B Epidermal growth factor 25.6 57 0.0019 22.9 3.0 28 105-132 12-41 (44)
14 2xze_Q Charged multivesicular 24.6 36 0.0012 23.9 1.8 14 269-282 27-40 (40)
15 2k9y_A Ephrin type-A receptor 24.6 67 0.0023 20.8 3.1 12 107-118 16-27 (41)
16 3azd_A Short alpha-tropomyosin 22.9 36 0.0012 22.9 1.5 16 268-283 4-19 (37)
17 2xyy_A Coat protein, P22; viru 21.2 30 0.001 34.0 1.2 59 229-288 45-121 (430)
No 1
>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y
Probab=69.61 E-value=1.4 Score=34.61 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.4
Q ss_pred ceeeecCCCCccccccc
Q 018859 230 TVRWIPANHPFATTAND 246 (349)
Q Consensus 230 tVRWIPaNHPFAtt~s~ 246 (349)
.|=|||+||||+.-|+.
T Consensus 14 ~v~vVPq~~~v~~~A~~ 30 (93)
T 1dgw_Y 14 DIIVIPSSFPVALKAAS 30 (93)
T ss_dssp CEEEECTTCCEEEEESS
T ss_pred cEEEECCCCceeEEecC
Confidence 47799999999988774
No 2
>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} SCOP: d.40.1.0 PDB: 3rdz_C
Probab=49.16 E-value=9.9 Score=29.32 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=19.9
Q ss_pred eEeeccCCCCCCCCCCCcee-eec
Q 018859 213 TIFLKEGDLIPPDVDPDTVR-WIP 235 (349)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVR-WIP 235 (349)
+++|.+|+.++.|.+||-|| |+-
T Consensus 44 v~Vl~~Gs~VT~Dfr~~RVrV~VD 67 (79)
T 3rdy_A 44 AIVLPEGSAVPRDLRCDRVWVFVD 67 (79)
T ss_dssp EEEEETTCCCCSCCCSSEEEEEEC
T ss_pred eEEeCCCCccCCccCCCEEEEEEC
Confidence 57899999999999999998 443
No 3
>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A
Probab=45.38 E-value=13 Score=27.35 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.3
Q ss_pred ceEeeccCCCCCCCCCCCcee
Q 018859 212 PTIFLKEGDLIPPDVDPDTVR 232 (349)
Q Consensus 212 PtvFLkEGdsvPpdVDPdtVR 232 (349)
-..+|.+|+.++.|.+||-||
T Consensus 33 ~v~vl~~g~~vT~Dfr~~RV~ 53 (69)
T 1mit_A 33 KAVILEEGTPVTKDFRCNRVR 53 (69)
T ss_dssp EEEEEETTCCCCSSCCTTEEE
T ss_pred eEEEecCCCccCCCcCCCEEE
Confidence 368999999999999999997
No 4
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=42.48 E-value=9.8 Score=26.44 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=9.1
Q ss_pred eEeeccCCCCCCCCCCCc
Q 018859 213 TIFLKEGDLIPPDVDPDT 230 (349)
Q Consensus 213 tvFLkEGdsvPpdVDPdt 230 (349)
.++|.+|++++.|.++|-
T Consensus 29 v~vl~~gs~vT~Df~~~R 46 (47)
T 1cq4_A 29 IIVLPVGTIVTMGQQQQG 46 (47)
T ss_dssp EEEEETTCCC--------
T ss_pred EEEeCCCCCcCcccCCCC
Confidence 579999999999999874
No 5
>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia}
Probab=41.40 E-value=16 Score=26.74 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=30.9
Q ss_pred CcceeecceeeeeccccccHHHHHHHHhhhhccccccCceEeeccCCCCCCCCCCCceee
Q 018859 174 NSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRW 233 (349)
Q Consensus 174 ~Stv~M~GK~yRLaPvtLT~Eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVRW 233 (349)
+|--|+-|+-...| ...+.+.|- -+ -..+|.+|++++.|.+||-||=
T Consensus 7 ~sWpELVG~~~~~A-------~~~I~~d~p-~~-----~v~vl~~g~~vT~Df~~~RV~v 53 (68)
T 1vbw_A 7 SSWPQLVGSTGAAA-------KAVIERENP-RV-----RAVIIKVGSGATKDFRCDRVRV 53 (68)
T ss_dssp CBCGGGTTSBHHHH-------HHHHHHHCT-TC-----EEEEEETTSCCCCSCCTTEEEE
T ss_pred CcCHHHCCcCHHHH-------HHHHHHHCC-CC-----eEEEecCCCccCCCcCCCEEEE
Confidence 45557777654333 333333332 11 4689999999999999999983
No 6
>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I
Probab=35.95 E-value=22 Score=27.15 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.8
Q ss_pred ceEeeccCCCCCCCCCCCceee
Q 018859 212 PTIFLKEGDLIPPDVDPDTVRW 233 (349)
Q Consensus 212 PtvFLkEGdsvPpdVDPdtVRW 233 (349)
-..+|.+|+.++.|.++|-||=
T Consensus 47 ~vrVl~~G~~VT~Dfr~dRV~V 68 (83)
T 2ci2_I 47 QIIVLPVGTIVTMEYRIDRVRL 68 (83)
T ss_dssp EEEEEETTCCCCSCCCTTEEEE
T ss_pred eEEEecCCCccCCCcCCCEEEE
Confidence 4689999999999999999983
No 7
>2okm_A Collagen adhesin; collagen-binding, cell adhesion; 1.65A {Enterococcus faecalis}
Probab=33.17 E-value=12 Score=32.23 Aligned_cols=21 Identities=38% Similarity=0.754 Sum_probs=17.6
Q ss_pred CceEeeccCCCCCCCCCCCceeee
Q 018859 211 RPTIFLKEGDLIPPDVDPDTVRWI 234 (349)
Q Consensus 211 RPtvFLkEGdsvPpdVDPdtVRWI 234 (349)
.|..|.|-||-.| |++.|||.
T Consensus 3 ~~~FyyKtGdm~~---d~~~VRWf 23 (147)
T 2okm_A 3 DYPFFYKVGDLAG---ESNQVRWF 23 (147)
T ss_dssp CCCSEEEEEECCS---STTEEEEE
T ss_pred CcccEEeccCCCC---CCCeEEEE
Confidence 4668999999974 77999995
No 8
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=31.35 E-value=1e+02 Score=25.99 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=19.3
Q ss_pred CCCCCCcc--ee-ecCCCcceeecceeeeecc
Q 018859 160 EDPFNNPL--VK-VGKSNSTMEMCGKVYRLAP 188 (349)
Q Consensus 160 eDPFNNPl--VK-i~k~~Stv~M~GK~yRLaP 188 (349)
+-||.+|= ++ +..+.-+|+|-+.-|+..|
T Consensus 61 ~~~f~~pg~a~~~~~~~~v~V~m~a~~~~f~P 92 (168)
T 3s8f_B 61 EGPWADPAQAVVQTGPNQYTVYVLAFAFGYQP 92 (168)
T ss_dssp SSTTSCGGGCEEEEETTEEEEEEEEETTEEES
T ss_pred ccccCCCCcccccCCCCeEEEEEEEEeceEec
Confidence 44999997 53 5566677777776555543
No 9
>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1
Probab=31.12 E-value=30 Score=25.19 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.2
Q ss_pred eEeeccCCCCCCCCCCCceee
Q 018859 213 TIFLKEGDLIPPDVDPDTVRW 233 (349)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVRW 233 (349)
..+|.+|+.++.|.+||-|+=
T Consensus 35 vrvl~pg~~vT~Dfr~~RV~v 55 (70)
T 1dwm_A 35 AIVLKEGSAMTKDFRCDRVWV 55 (70)
T ss_dssp EEEEETTCCCCCSCCTTEEEE
T ss_pred EEEecCCCccCCccCCCeEEE
Confidence 678999999999999999873
No 10
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=30.97 E-value=25 Score=27.72 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=28.5
Q ss_pred CchhhHHHHhhccCchhhhhhccCCcchhhHHHHHHHHHHHHHHhh
Q 018859 79 DPVAKFQETLISLPPVAFVMKRHTRSSFAIGLSLSTAFLVIVVRAF 124 (349)
Q Consensus 79 ~sv~~~~~~v~s~Pp~vf~~~k~~g~nf~~g~cv~~a~l~~~~R~~ 124 (349)
++...|+..+ .+.|.|+.| .++.+|+++.|++++.+.+
T Consensus 13 ~~k~rLr~~i------~~qMlkGAg--~AAv~f~~~~~~lv~l~~i 50 (77)
T 2dw3_A 13 NPKTNLRLWV------AFQMMKGAG--WAGGVFFGTLLLIGFFRVV 50 (77)
T ss_dssp CHHHHHHHHH------HHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHH------HHHHHhccc--HHHHHHHHHHHHHHHHHHH
Confidence 3455677654 488888876 5778999999999888764
No 11
>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ...
Probab=29.75 E-value=16 Score=26.52 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.5
Q ss_pred ceEeeccCCCCCCCCCCCceee
Q 018859 212 PTIFLKEGDLIPPDVDPDTVRW 233 (349)
Q Consensus 212 PtvFLkEGdsvPpdVDPdtVRW 233 (349)
-..+|.+|++++.|.+||-||=
T Consensus 28 ~v~vl~~g~~vT~Df~~~RV~v 49 (64)
T 1to2_I 28 QIIVLPVGTIVTKEYRIDRVRL 49 (64)
T ss_dssp EEEEEETTCEEECBCCTTEEEE
T ss_pred eEEEecCCCccCCCcCCCEEEE
Confidence 3579999999999999999983
No 12
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=29.69 E-value=22 Score=26.24 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.2
Q ss_pred eEeeccCCCCCCCCCCCceee
Q 018859 213 TIFLKEGDLIPPDVDPDTVRW 233 (349)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVRW 233 (349)
..+|.+|+.++.|.+||-||=
T Consensus 34 v~vl~~g~~vT~Df~~~RV~V 54 (70)
T 1cse_I 34 VYFLPEGSPVTLDLRYNRVRV 54 (70)
T ss_dssp EEEEETTCCEECCCCTTEEEE
T ss_pred EEEecCCCccCCccCCCeEEE
Confidence 689999999999999999983
No 13
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.57 E-value=57 Score=22.87 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=14.2
Q ss_pred chhhHHHHHHHHHHHHH--HhhheecccCC
Q 018859 105 SFAIGLSLSTAFLVIVV--RAFIVRRSRYN 132 (349)
Q Consensus 105 nf~~g~cv~~a~l~~~~--R~~v~r~~~~~ 132 (349)
.+++|+..+++++++.+ -.|.+|+++..
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 47777665555543333 33445554443
No 14
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=24.64 E-value=36 Score=23.87 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhhh
Q 018859 269 EHEALQKKLEALQN 282 (349)
Q Consensus 269 EHEALq~klea~qn 282 (349)
+.+++|.||.||.+
T Consensus 27 di~~MqsRLaALRS 40 (40)
T 2xze_Q 27 ALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 46899999999864
No 15
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=24.61 E-value=67 Score=20.81 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHH
Q 018859 107 AIGLSLSTAFLV 118 (349)
Q Consensus 107 ~~g~cv~~a~l~ 118 (349)
++|+.+++++|+
T Consensus 16 ~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 16 IGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHH
T ss_pred EeehhHHHHHHH
Confidence 445666666665
No 16
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=22.92 E-value=36 Score=22.87 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHhhhH
Q 018859 268 AEHEALQKKLEALQNE 283 (349)
Q Consensus 268 AEHEALq~klea~qne 283 (349)
++.+|+++||..++++
T Consensus 4 ~~i~avKkKiq~lq~q 19 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQ 19 (37)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4678999999999874
No 17
>2xyy_A Coat protein, P22; virus, icosahedral reconstruction; 3.80A {Enterobacteria phage P22} PDB: 2xyz_A 3iyh_A 3iyi_A
Probab=21.22 E-value=30 Score=34.05 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=42.7
Q ss_pred CceeeecCC---C-----CcccccccccHHHHhcccccccCCccchhhhHH--------HHHHHHHHhhh--Hhhhcc
Q 018859 229 DTVRWIPAN---H-----PFATTANDIDEDLAQNNVYQKQGVPFRIRAEHE--------ALQKKLEALQN--EQKLNK 288 (349)
Q Consensus 229 dtVRWIPaN---H-----PFAtt~s~iDEdlAq~NVyQk~GVP~RikAEHE--------ALq~klea~qn--eqklnk 288 (349)
||| |||+- + +|+..+++|+|...--++=+-+-||+++.||-- .||.-|.+|-| |.+|-+
T Consensus 45 dtv-~~Pv~~~~~~~dg~~~t~~~~~~~e~~V~~~~~~~~~v~~~~~akel~d~~~~~~~~~~A~~~Lan~Ve~dL~~ 121 (430)
T 2xyy_A 45 NTI-WMPVEQESPTQEGWDLTDKATGLLELNVAVNMGEPDNDFFQLRADDLRDETAYRRRIQSAARKLANNVELKVAN 121 (430)
T ss_pred CeE-EeccCccccccccCcccCCCCccccceeeEEecCcccccEEechhHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 99863 3 899999999998888888888899999999842 23444555444 455555
Done!