Query 018859
Match_columns 349
No_of_seqs 16 out of 18
Neff 1.7
Searched_HMMs 13730
Date Mon Mar 25 07:10:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018859.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018859hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gpja2 c.2.1.7 (A:144-302) Gl 56.9 4.5 0.00033 30.9 3.7 34 191-230 99-132 (159)
2 d2epra1 g.37.1.1 (A:350-384) P 49.9 1.8 0.00013 28.3 0.2 12 174-185 5-16 (35)
3 d1hzta_ d.113.1.2 (A:) Isopent 40.8 5.1 0.00037 29.9 1.6 47 225-282 100-150 (153)
4 d1ax8a_ a.26.1.1 (A:) Leptin ( 33.1 11 0.00079 30.5 2.5 46 233-282 39-90 (144)
5 g1hym.1 d.40.1.1 (A:,B:) Tryps 30.3 15 0.0011 26.0 2.6 23 212-234 32-55 (68)
6 d1dwma_ d.40.1.1 (A:) Trypsin 27.2 18 0.0013 25.7 2.5 23 213-235 34-57 (69)
7 d1csei_ d.40.1.1 (I:) Eglin C 26.0 13 0.00094 26.0 1.6 22 213-234 27-49 (63)
8 d1wiba_ d.47.1.1 (A:) 60S ribo 21.9 21 0.0015 26.5 2.1 36 218-253 3-40 (92)
9 d1ztwa1 e.8.1.2 (A:24-278) MML 20.8 25 0.0018 28.3 2.5 35 137-181 55-90 (255)
10 d2p0ma1 a.119.1.2 (A:113-663) 20.3 19 0.0014 33.1 2.0 45 191-241 12-56 (551)
No 1
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=56.91 E-value=4.5 Score=30.86 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=27.2
Q ss_pred ccHHHHHHHHhhhhccccccCceEeeccCCCCCCCCCCCc
Q 018859 191 LTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDT 230 (349)
Q Consensus 191 LT~Eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdt 230 (349)
+|+|.-....++|. +++|.+|+--| +|.||||+.
T Consensus 99 i~~~~i~~~~~~r~----~~~~~~iiDla--vPr~vd~~v 132 (159)
T d1gpja2 99 IHVDDVREALRKRD----RRSPILIIDIA--NPRDVEEGV 132 (159)
T ss_dssp BCHHHHHHHHHHCS----SCCCEEEEECC--SSCSBCTTG
T ss_pred ccHhhhHHHHHhcc----cCCCeEEEeec--CCCCcChhh
Confidence 78888777777663 57999999875 999999973
No 2
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.88 E-value=1.8 Score=28.34 Aligned_cols=12 Identities=42% Similarity=1.101 Sum_probs=9.7
Q ss_pred Ccceeecceeee
Q 018859 174 NSTMEMCGKVYR 185 (349)
Q Consensus 174 ~Stv~M~GK~yR 185 (349)
+-.-+||||.||
T Consensus 5 ~~~ce~cgk~fr 16 (35)
T d2epra1 5 QVACEICGKIFR 16 (35)
T ss_dssp SEEETTTTEEES
T ss_pred hhhHHHHHHHHH
Confidence 445789999998
No 3
>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}
Probab=40.75 E-value=5.1 Score=29.89 Aligned_cols=47 Identities=17% Similarity=0.367 Sum_probs=30.8
Q ss_pred CCCCC---ceeeecCCCCcccccccccHHHHhcccccccCCc-cchhhhHHHHHHHHHHhhh
Q 018859 225 DVDPD---TVRWIPANHPFATTANDIDEDLAQNNVYQKQGVP-FRIRAEHEALQKKLEALQN 282 (349)
Q Consensus 225 dVDPd---tVRWIPaNHPFAtt~s~iDEdlAq~NVyQk~GVP-~RikAEHEALq~klea~qn 282 (349)
..||+ .++|++. ++|.++++.+- ++- .| |++.++|.+++++|.+.-.
T Consensus 100 ~~~~~Ev~~~~W~~~--------~el~~~i~~~p--~~~-tpW~~~~~~~~~~~~~l~~~~~ 150 (153)
T d1hzta_ 100 QINDDEVMDYQWCDL--------ADVLHGIDATP--WAF-SPWMVMQATNREARKRLSAFTQ 150 (153)
T ss_dssp CCCTTTEEEEEEECH--------HHHHHHHHHCG--GGB-CHHHHHHHHSHHHHHHHHHTTS
T ss_pred cCChhheeEEEEeeH--------HHHHHHHHcCC--ccc-CHHHHHHHhhHHHHHHHHHHHh
Confidence 33555 6799974 45555554431 111 35 8999999999999987643
No 4
>d1ax8a_ a.26.1.1 (A:) Leptin (obesity protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.12 E-value=11 Score=30.52 Aligned_cols=46 Identities=39% Similarity=0.637 Sum_probs=35.0
Q ss_pred eecCCCCcccccccccHHHHhcccccc--cCCccc----hhhhHHHHHHHHHHhhh
Q 018859 233 WIPANHPFATTANDIDEDLAQNNVYQK--QGVPFR----IRAEHEALQKKLEALQN 282 (349)
Q Consensus 233 WIPaNHPFAtt~s~iDEdlAq~NVyQk--~GVP~R----ikAEHEALq~klea~qn 282 (349)
.||++||+-+-+ .||+-|| +||+ +-.|++ |....|-|+..|+.+--
T Consensus 39 fiP~~~pi~sLs-smdqTL~---~yQ~iL~sLp~~~v~QI~nDlenLr~lL~~lat 90 (144)
T d1ax8a_ 39 FIPGLHPILTLS-KMDQTLA---VYQQILTSMPSRNVIQISNDLENLRDLLHVLAF 90 (144)
T ss_dssp SCCCSSCCSSHH-HHHHHHH---HHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccccHH-HHHHHHH---HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 499999998764 5888886 6776 466765 77788888888887644
No 5
>g1hym.1 d.40.1.1 (A:,B:) Trypsin inhibitor V {Pumpkin (Cucurbita maxima) [TaxId: 3661]}
Probab=30.27 E-value=15 Score=26.05 Aligned_cols=23 Identities=30% Similarity=0.704 Sum_probs=20.4
Q ss_pred ceEeeccCCCCCCCCCCCcee-ee
Q 018859 212 PTIFLKEGDLIPPDVDPDTVR-WI 234 (349)
Q Consensus 212 PtvFLkEGdsvPpdVDPdtVR-WI 234 (349)
-.+.|.||.+++.|.++|-|| |+
T Consensus 32 ~v~vlp~gs~vt~Dfr~~RVrv~V 55 (68)
T g1hym.1 32 KAVILEEGTPVTKDFRCNRVRIWV 55 (68)
T ss_dssp EEEEEECCSCCCCCCCTTEEEEEE
T ss_pred eEEEeeCCCcccCcccCCEEEEEE
Confidence 368899999999999999998 54
No 6
>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]}
Probab=27.24 E-value=18 Score=25.74 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.4
Q ss_pred eEeeccCCCCCCCCCCCcee-eec
Q 018859 213 TIFLKEGDLIPPDVDPDTVR-WIP 235 (349)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVR-WIP 235 (349)
.+.|.||.+++.|.++|-|| |+=
T Consensus 34 v~v~~~gs~vt~Dfr~~RVrv~Vd 57 (69)
T d1dwma_ 34 AIVLKEGSAMTKDFRCDRVWVIVN 57 (69)
T ss_dssp EEEEETTCCCCCSCCTTEEEEEEC
T ss_pred EEEeeCCCcccCcccCCEEEEEEC
Confidence 67899999999999999998 553
No 7
>d1csei_ d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=26.01 E-value=13 Score=25.98 Aligned_cols=22 Identities=32% Similarity=0.532 Sum_probs=20.5
Q ss_pred eEeeccCCCCCCCCCCCcee-ee
Q 018859 213 TIFLKEGDLIPPDVDPDTVR-WI 234 (349)
Q Consensus 213 tvFLkEGdsvPpdVDPdtVR-WI 234 (349)
.++|.||.+++.|.++|-|| |+
T Consensus 27 v~v~p~gs~vt~Dfr~~RVrv~V 49 (63)
T d1csei_ 27 VYFLPEGSPVTLDLRYNRVRVFY 49 (63)
T ss_dssp EEEEETTCCEECCCCTTEEEEEE
T ss_pred EEEEeCCCcccCcccCCEEEEEE
Confidence 78999999999999999998 76
No 8
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.87 E-value=21 Score=26.54 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=23.4
Q ss_pred cCCCCCCCCCCCceeeecCCCCc--ccccccccHHHHh
Q 018859 218 EGDLIPPDVDPDTVRWIPANHPF--ATTANDIDEDLAQ 253 (349)
Q Consensus 218 EGdsvPpdVDPdtVRWIPaNHPF--Att~s~iDEdlAq 253 (349)
.|.+-||-+||+.|++|=-.=+= |+.+.-|...|.+
T Consensus 3 ~~~~~ppK~dp~~v~~Ikl~v~gG~A~p~PplgP~LGp 40 (92)
T d1wiba_ 3 SGSSGPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGP 40 (92)
T ss_dssp CCCCCCCCCCSSSCEEEEEEEETTCCCCSSCSHHHHTT
T ss_pred CcCCCCCCCCCCceEEEEEEEecCccCCCCCccccccc
Confidence 58889999999999998422111 3334445555655
No 9
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=20.83 E-value=25 Score=28.26 Aligned_cols=35 Identities=26% Similarity=0.512 Sum_probs=27.6
Q ss_pred hHHHHHhcccccCCcCCCCCCccCCCCCCcceeecCCCcc-eeecc
Q 018859 137 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCG 181 (349)
Q Consensus 137 VaDLvRRGQLrSdrRGiskplkYeDPFNNPlVKi~k~~St-v~M~G 181 (349)
|.+|+..|.++- -+.||+.|++=|.|.+++ ..||.
T Consensus 55 i~~ll~~G~I~p----------~~s~~~sp~~~V~Kk~~~~~R~v~ 90 (255)
T d1ztwa1 55 IQRLLDQGILVP----------CQSPWNTPLLPVKKPGTNDYRPVQ 90 (255)
T ss_dssp HHHHHHHTSEEE----------ECCSCBCCEEECCSSSSCCCCEEE
T ss_pred HHHHhhhceeee----------cCCCcccccccccccccceEEEee
Confidence 689999998862 134899999999988764 77876
No 10
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=20.34 E-value=19 Score=33.12 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=35.1
Q ss_pred ccHHHHHHHHhhhhccccccCceEeeccCCCCCCCCCCCceeeecCCCCcc
Q 018859 191 LTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFA 241 (349)
Q Consensus 191 LT~Eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVRWIPaNHPFA 241 (349)
|=+||+..--+-|.+.|+|+.- .+-+|-.||+.+++.||.+--|.
T Consensus 12 ~~~~~R~~EL~~~~~~Y~w~~~------~~G~P~~~~~~~~~~lP~de~f~ 56 (551)
T d2p0ma1 12 LFQKHREQELEERRKLYQWGSW------KEGLILNVAGSKLTDLPVDERFL 56 (551)
T ss_dssp TTHHHHHHHHHHHHHHSCEECS------STTSCCEESCSSGGGSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCC------CCCCCcccCccccccCChhhccc
Confidence 4567766666666789999742 33489999999999999998885
Done!