BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018860
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 148/316 (46%), Gaps = 27/316 (8%)
Query: 17 RPVVD-LFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALR 75
RP D ++++ + DG + S D + + ETG+ + + H+ V C ++
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 76 AASASADFSAKVWDALTGDVLHSF-EHKHIVRACSFS-EDTHLLL-TGGMEKILRIFDLN 132
A+ SAD K+WD+ TG ++H++ EH V C F+ + HLLL TG + L+++DLN
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 133 RPDAPPREVDRSPGSVRTV--AWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPV 190
+ + + G +V D +L++C+ G +RLWDVRS +++ K
Sbjct: 739 QKECR----NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 191 TSAE--------------VSQDGRYITTADGSTVKFWDANHFGLVKSYNM--PCTIESAS 234
S+E S DG I A + V +D + GL+ + TI+
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 854
Query: 235 LEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
P Y + V V ++ + ++A +GH VH V FSP G S+ + S+D TI
Sbjct: 855 FSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTI 913
Query: 295 RIWQTGPVTNDDTETL 310
R+W+T V + L
Sbjct: 914 RVWETKKVCKNSAIVL 929
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 23/215 (10%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GH + V + + T DG LIS+S+DS + N +TGD++ + H+ V L ++
Sbjct: 1008 GHKKAVRHIQF---TADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS 1063
Query: 74 LRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRI--FD 130
R S S D + KVW+ +TG + F H+ V +C+ S D + +K +I FD
Sbjct: 1064 -RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1122
Query: 131 LNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSP- 189
L +P E+ G VR A+ D +L+T D G +R+W+V G+++ + S
Sbjct: 1123 LL---SPLHELKGHNGCVRCSAF-SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1178
Query: 190 ---------VTSAEVSQDGRYITTADGSTVKFWDA 215
VT S D + + +A G +K+W+
Sbjct: 1179 EGTATHGGWVTDVCFSPDSKTLVSA-GGYLKWWNV 1212
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 147 SVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTAD 206
+VR + + +T++S+ D +++W+ ++G+ V + V + QD R ++ +
Sbjct: 1012 AVRHIQFTADGKTLISSSED-SVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF 1070
Query: 207 GSTVKFWDA------NHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTG 260
TVK W+ F + + C I S + KF + D + + F
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA------TKFSSTSADKTAKIWSFDLL 1124
Query: 261 NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
+ + KGH+G V C FS G A+G ++G IRIW
Sbjct: 1125 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 105/281 (37%), Gaps = 67/281 (23%)
Query: 59 GHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLL 118
GHK AV + S+S D +VW+ TGD + H+ V+ +D+ LL
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLS 1067
Query: 119 TGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSG 178
FD G V++W+V +G
Sbjct: 1068 WS--------FD-------------------------------------GTVKVWNVITG 1082
Query: 179 EIVQTLET-KSPVTSAEVSQDG-RYITTADGSTVKFWDANHFG---LVKSYNMPCTIESA 233
I + + V S +S D ++ +T+ T K W + +K +N +
Sbjct: 1083 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1142
Query: 234 SLEPKYGNKFVAGGEDMWVRFFD------FHTGNEIACNKG---HHGPVHCVRFSPGGES 284
SL+ G G ++ +R ++ H+ I+ +G H G V V FSP ++
Sbjct: 1143 SLD---GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1199
Query: 285 YASGSEDGTIRIWQTGPVTNDDTETLTANGT-IGKVKVTAD 324
S G ++ W T D ++T NGT + K+ V+ D
Sbjct: 1200 LVSAG--GYLKWWNVA--TGDSSQTFYTNGTNLKKIHVSPD 1236
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 148/316 (46%), Gaps = 27/316 (8%)
Query: 17 RPVVD-LFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALR 75
RP D ++++ + DG + S D + + ETG+ + + H+ V C ++
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 76 AASASADFSAKVWDALTGDVLHSF-EHKHIVRACSFS-EDTHLLL-TGGMEKILRIFDLN 132
A+ SAD K+WD+ TG ++H++ EH V C F+ + HLLL TG + L+++DLN
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 133 RPDAPPREVDRSPGSVRTV--AWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPV 190
+ + + G +V D +L++C+ G +RLWDVRS +++ K
Sbjct: 732 QKECR----NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 191 TSAE--------------VSQDGRYITTADGSTVKFWDANHFGLVKSYNM--PCTIESAS 234
S+E S DG I A + V +D + GL+ + TI+
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847
Query: 235 LEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
P Y + V V ++ + ++A +GH VH V FSP G S+ + S+D TI
Sbjct: 848 FSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTI 906
Query: 295 RIWQTGPVTNDDTETL 310
R+W+T V + L
Sbjct: 907 RVWETKKVCKNSAIVL 922
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 23/215 (10%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GH + V + + T DG LIS+S+DS + N +TGD++ + H+ V L ++
Sbjct: 1001 GHKKAVRHIQF---TADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS 1056
Query: 74 LRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRI--FD 130
R S S D + KVW+ +TG + F H+ V +C+ S D + +K +I FD
Sbjct: 1057 -RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115
Query: 131 LNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSP- 189
L +P E+ G VR A+ D +L+T D G +R+W+V G+++ + S
Sbjct: 1116 LL---SPLHELKGHNGCVRCSAF-SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171
Query: 190 ---------VTSAEVSQDGRYITTADGSTVKFWDA 215
VT S D + + +A G +K+W+
Sbjct: 1172 EGTATHGGWVTDVCFSPDSKTLVSA-GGYLKWWNV 1205
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 147 SVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTAD 206
+VR + + +T++S+ D +++W+ ++G+ V + V + QD R ++ +
Sbjct: 1005 AVRHIQFTADGKTLISSSED-SVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF 1063
Query: 207 GSTVKFWDA------NHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTG 260
TVK W+ F + + C I S + KF + D + + F
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA------TKFSSTSADKTAKIWSFDLL 1117
Query: 261 NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
+ + KGH+G V C FS G A+G ++G IRIW
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 105/281 (37%), Gaps = 67/281 (23%)
Query: 59 GHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLL 118
GHK AV + S+S D +VW+ TGD + H+ V+ +D+ LL
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLS 1060
Query: 119 TGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSG 178
FD G V++W+V +G
Sbjct: 1061 WS--------FD-------------------------------------GTVKVWNVITG 1075
Query: 179 EIVQTLET-KSPVTSAEVSQDG-RYITTADGSTVKFWDANHFG---LVKSYNMPCTIESA 233
I + + V S +S D ++ +T+ T K W + +K +N +
Sbjct: 1076 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1135
Query: 234 SLEPKYGNKFVAGGEDMWVRFFD------FHTGNEIACNKG---HHGPVHCVRFSPGGES 284
SL+ G G ++ +R ++ H+ I+ +G H G V V FSP ++
Sbjct: 1136 SLD---GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1192
Query: 285 YASGSEDGTIRIWQTGPVTNDDTETLTANGT-IGKVKVTAD 324
S G ++ W T D ++T NGT + K+ V+ D
Sbjct: 1193 LVSAG--GYLKWWNVA--TGDSSQTFYTNGTNLKKIHVSPD 1229
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 148/316 (46%), Gaps = 27/316 (8%)
Query: 17 RPVVD-LFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALR 75
RP D ++++ + DG + S D + + ETG+ + + H+ V C T+
Sbjct: 618 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 76 AASASADFSAKVWDALTGDVLHSF-EHKHIVRACSFSEDTH--LLLTGGMEKILRIFDLN 132
A+ S D K+W+++TG+++H++ EH V C F+ +H LL TG + L+++DLN
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 133 RPDAPPREVDRSPGSVRTV--AWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKS-- 188
+ + + G +V D +L++C+ G ++LWD S +++ K
Sbjct: 738 QKECR----NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Query: 189 -----PVTSAEV-------SQDGRYITTADGSTVKFWDANHFGLVKSYNM--PCTIESAS 234
P EV S DG I A + + +D + GL+ + TI+
Sbjct: 794 LNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCD 853
Query: 235 LEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
P+ VA + V ++ + +++A +GH VH V FSP G S+ + S+D TI
Sbjct: 854 FSPQNHLAVVALSQ-YCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTI 912
Query: 295 RIWQTGPVTNDDTETL 310
R+W+T V + L
Sbjct: 913 RLWETKKVCKNSAVML 928
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Query: 22 LFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASA 81
+++ T D LIS+S D+ + N + I GH+ V L N+ R S S
Sbjct: 1012 VWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNS-RLLSWSF 1069
Query: 82 DFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRI--FDLNRPDAPP 138
D + KVW+ +TG+ F H+ V +C S D + +K +I FDL P
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL---LPL 1126
Query: 139 REVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSP--------- 189
E+ G VR A+ D T+L+T D G +R+W+V +GE++ S
Sbjct: 1127 HELRGHNGCVRCSAF-SVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGW 1185
Query: 190 VTSAEVSQDGRYITTADGSTVKFWDA 215
VT S DG+ + +A G +K+W+
Sbjct: 1186 VTDLCFSPDGKMLISA-GGYIKWWNV 1210
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 12/188 (6%)
Query: 34 LISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG 93
L+S S D + + N TG+ F H+G V SC + +A + +S SAD +AK+W
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 94 DVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPD-----APPREVDRSP-- 145
LH H VR +FS D+ LL TG +RI++++ + AP E +
Sbjct: 1124 LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG 1183
Query: 146 GSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYITT 204
G V + + + ++S G ++ W+V +GE QT T + + VS D + T
Sbjct: 1184 GWVTDLCFSPDGKMLISA---GGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVT 1240
Query: 205 ADGSTVKF 212
D + +
Sbjct: 1241 VDNLGILY 1248
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 156 SDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDA 215
+D+ L + +D +++W+ + + + + V + ++ R ++ + TVK W
Sbjct: 1019 ADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVW-- 1076
Query: 216 NHFGLVKSYNMPC---TIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGP 272
N K + C T+ S + KF + D + + F + +GH+G
Sbjct: 1077 NIITGNKEKDFVCHQGTVLSCDISHD-ATKFSSTSADKTAKIWSFDLLLPLHELRGHNGC 1135
Query: 273 VHCVRFSPGGESYASGSEDGTIRIWQTG 300
V C FS A+G ++G IRIW
Sbjct: 1136 VRCSAFSVDSTLLATGDDNGEIRIWNVS 1163
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 135/287 (47%), Gaps = 14/287 (4%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GHS V + +SP DG + SAS D + L N G + T GH +VW +
Sbjct: 301 GHSSSVWGVAFSP---DGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 74 LRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132
ASAS D + K+W+ G +L + H VR +FS D + + +K ++++ N
Sbjct: 357 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--N 413
Query: 133 RPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVT 191
R + + SV VA+ DQTI S D V+LW+ R+G+++QTL S V
Sbjct: 414 RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWN-RNGQLLQTLTGHSSSVR 471
Query: 192 SAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDM 250
S DG+ I +A D TVK W+ N L ++ + P G + +D
Sbjct: 472 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDK 530
Query: 251 WVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
V+ ++ G + GH V V FSP G++ AS S D T+++W
Sbjct: 531 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 135/287 (47%), Gaps = 14/287 (4%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GHS V + +SP DG + SAS D + L N G + T GH +VW +
Sbjct: 137 GHSSSVWGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 192
Query: 74 LRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132
ASAS D + K+W+ G +L + H VR +FS D + + +K ++++ N
Sbjct: 193 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--N 249
Query: 133 RPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVT 191
R + + SV VA+ QTI S D V+LW+ R+G+++QTL S V
Sbjct: 250 RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT-VKLWN-RNGQLLQTLTGHSSSVW 307
Query: 192 SAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDM 250
S DG+ I +A D TVK W+ N L ++ + P G + +D
Sbjct: 308 GVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPD-GQTIASASDDK 366
Query: 251 WVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
V+ ++ G + GH V V FSP G++ AS S+D T+++W
Sbjct: 367 TVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 134/287 (46%), Gaps = 14/287 (4%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GHS V + +SP DG + SAS D + L N G + T GH +VW +
Sbjct: 96 GHSSSVRGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 151
Query: 74 LRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132
ASAS D + K+W+ G +L + H V +FS D + + +K ++++ N
Sbjct: 152 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--N 208
Query: 133 RPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVT 191
R + + SVR VA+ QTI S D V+LW+ R+G+++QTL S V
Sbjct: 209 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLTGHSSSVN 266
Query: 192 SAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDM 250
DG+ I +A D TVK W+ N L ++ + P G + +D
Sbjct: 267 GVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDK 325
Query: 251 WVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
V+ ++ G + GH V V FSP G++ AS S+D T+++W
Sbjct: 326 TVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 134/289 (46%), Gaps = 14/289 (4%)
Query: 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDT 71
HS V + +SP DG + SAS D + L N G + T GH +VW
Sbjct: 12 LEAHSSSVRGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 72 NALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFD 130
+ ASAS D + K+W+ G +L + H VR +FS D + + +K ++++
Sbjct: 68 DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW- 125
Query: 131 LNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSP 189
NR + + SV VA+ QTI S D V+LW+ R+G+++QTL S
Sbjct: 126 -NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK-TVKLWN-RNGQLLQTLTGHSSS 182
Query: 190 VTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGE 248
V S DG+ I +A D TVK W+ N L ++ + P G + +
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASD 241
Query: 249 DMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
D V+ ++ G + GH V+ V F P G++ AS S+D T+++W
Sbjct: 242 DKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 132/287 (45%), Gaps = 14/287 (4%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GHS V + + P DG + SAS D + L N G + T GH +VW +
Sbjct: 260 GHSSSVNGVAFRP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 315
Query: 74 LRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132
ASAS D + K+W+ G L + H V +FS D + + +K ++++ N
Sbjct: 316 QTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--N 372
Query: 133 RPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVT 191
R + + SVR VA+ QTI S D V+LW+ R+G+++QTL S V
Sbjct: 373 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLTGHSSSVW 430
Query: 192 SAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDM 250
S D + I +A D TVK W+ N L ++ + P G + +D
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDK 489
Query: 251 WVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
V+ ++ G + GH V V FSP G++ AS S+D T+++W
Sbjct: 490 TVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 132/287 (45%), Gaps = 14/287 (4%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GHS V + +SP DG + SAS D + L N G + T GH +V +
Sbjct: 219 GHSSSVRGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDG 274
Query: 74 LRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132
ASAS D + K+W+ G +L + H V +FS D + + +K ++++ N
Sbjct: 275 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--N 331
Query: 133 RPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVT 191
R + + SV VA+ QTI S D V+LW+ R+G+++QTL S V
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLTGHSSSVR 389
Query: 192 SAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDM 250
S DG+ I +A D TVK W+ N L ++ + P + +D
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD-DQTIASASDDK 448
Query: 251 WVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
V+ ++ G + GH V V FSP G++ AS S+D T+++W
Sbjct: 449 TVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GHS V + +SP DG + SAS D + L N G + T GH +VW +
Sbjct: 506 GHSSSVRGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 561
Query: 74 LRAASASADFSAKVWD 89
ASAS+D + K+W+
Sbjct: 562 QTIASASSDKTVKLWN 577
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 143/317 (45%), Gaps = 39/317 (12%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GH RP+ + Y+ +G L S SKDSS + G+ +GT +GH G +WS +D
Sbjct: 30 GHERPLTQVKYNK---EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 74 LRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILR------ 127
+ SAD+S K+WD G + +++ V+ FS + L ++ +++
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFL-AILDNVMKNPGSIN 145
Query: 128 IFDLNRPDA----------PPREVDRSPG-SVRTVA-WLHSDQTILSTCTDMGGVRLWDV 175
I+++ R A P ++ G TVA W + I++ D G + +DV
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-GKISKYDV 204
Query: 176 RSG-EIVQTLET-KSPVTSAEVSQDGRYITTADGSTVKFW-DANHFGLVKSYNMPCTIES 232
+ E V +++ + ++ + S D Y T+ T F D + ++K Y C + +
Sbjct: 205 SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNT 264
Query: 233 ASLEPKYGNKFVAGGED-------------MWVRFFDFHTGNEIACNKGHHGPVHCVRFS 279
A + P + GG++ RF+ EI +GH GP++ V S
Sbjct: 265 AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS 324
Query: 280 PGGESYASGSEDGTIRI 296
P G SYASG EDG IR+
Sbjct: 325 PQGTSYASGGEDGFIRL 341
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 22/310 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 88
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179
++ +RI+D+ + + P V+ +H D +++ + + G R+WD SG+
Sbjct: 149 FDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 180 IVQTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIE 231
++TL + PV+ + S +G+YI A +T+K WD + +K+Y C
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 264
Query: 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-- 289
+ S+ G V+G ED V ++ T + +GH V P AS +
Sbjct: 265 NFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322
Query: 290 EDGTIRIWQT 299
D TI++W++
Sbjct: 323 NDKTIKLWKS 332
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 22/310 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 34 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 90
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 91 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179
++ +RI+D+ + + P V+ +H D +++ + + G R+WD SG+
Sbjct: 151 FDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 180 IVQTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIE 231
++TL + PV+ + S +G+YI A +T+K WD + +K+Y C
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 266
Query: 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-- 289
+ S+ G V+G ED V ++ T + +GH V P AS +
Sbjct: 267 NFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 324
Query: 290 EDGTIRIWQT 299
D TI++W++
Sbjct: 325 NDKTIKLWKS 334
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 22/310 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179
++ +RI+D+ + + P V+ +H D +++ + + G R+WD SG+
Sbjct: 127 FDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 180 IVQTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIE 231
++TL + PV+ + S +G+YI A +T+K WD + +K+Y C
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-- 289
+ S+ G V+G ED V ++ T + +GH V P AS +
Sbjct: 243 NFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 290 EDGTIRIWQT 299
D TI++W++
Sbjct: 301 NDKTIKLWKS 310
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 22/310 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179
++ +RI+D+ + + P V+ +H D +++ + + G R+WD SG+
Sbjct: 133 FDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 180 IVQTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIE 231
++TL + PV+ + S +G+YI A +T+K WD + +K+Y C
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-- 289
+ S+ G V+G ED V ++ T + +GH V P AS +
Sbjct: 249 NFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 290 EDGTIRIWQT 299
D TI++W++
Sbjct: 307 NDKTIKLWKS 316
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 22/310 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179
++ +RI+D+ + + P V+ +H D +++ + + G R+WD SG+
Sbjct: 133 FDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 180 IVQTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIE 231
++TL + PV+ + S +G+YI A +T+K WD + +K+Y C
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-- 289
+ S+ G V+G ED V ++ T + +GH V P AS +
Sbjct: 249 NFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 290 EDGTIRIWQT 299
D TI++W++
Sbjct: 307 NDKTIKLWKS 316
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 22/310 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 67
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 68 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179
++ +RI+D+ + + P V+ +H D +++ + + G R+WD SG+
Sbjct: 128 FDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 180 IVQTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIE 231
++TL + PV+ + S +G+YI A +T+K WD + +K+Y C
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Query: 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-- 289
+ S+ G V+G ED V ++ T + +GH V P AS +
Sbjct: 244 NFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 301
Query: 290 EDGTIRIWQT 299
D TI++W++
Sbjct: 302 NDKTIKLWKS 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 22/310 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 71
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 72 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179
++ +RI+D+ + + P V+ +H D +++ + + G R+WD SG+
Sbjct: 132 FDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 180 IVQTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIE 231
++TL + PV+ + S +G+YI A +T+K WD + +K+Y C
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Query: 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-- 289
+ S+ G V+G ED V ++ T + +GH V P AS +
Sbjct: 248 NFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 305
Query: 290 EDGTIRIWQT 299
D TI++W++
Sbjct: 306 NDKTIKLWKS 315
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 22/310 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179
++ +RI+D+ + + P V+ +H D +++ + + G R+WD SG+
Sbjct: 133 FDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 180 IVQTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIE 231
++TL + PV+ + S +G+YI A +T+K WD + +K+Y C
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-- 289
+ S+ G V+G ED V ++ T + +GH V P AS +
Sbjct: 249 NFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 290 EDGTIRIWQT 299
D TI++W++
Sbjct: 307 NDKTIKLWKS 316
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 22/310 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 62
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 63 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179
++ +RI+D+ + + P V+ +H D +++ + + G R+WD SG+
Sbjct: 123 FDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 180 IVQTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIE 231
++TL + PV+ + S +G+YI A +T+K WD + +K+Y C
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 238
Query: 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-- 289
+ S+ G V+G ED V ++ T + +GH V P AS +
Sbjct: 239 NFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 296
Query: 290 EDGTIRIWQT 299
D TI++W++
Sbjct: 297 NDKTIKLWKS 306
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 22/310 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179
++ +RI+D+ + + P V+ +H D +++ + + G R+WD SG+
Sbjct: 127 FDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 180 IVQTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIE 231
++TL + PV+ + S +G+YI A +T+K WD + +K+Y C
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-- 289
+ S+ G V+G ED V ++ T + +GH V P AS +
Sbjct: 243 NFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 290 EDGTIRIWQT 299
D TI++W++
Sbjct: 301 NDKTIKLWKS 310
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 22/310 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 83
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 84 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179
++ +RI+D+ + + P V+ +H D +++ + + G R+WD SG+
Sbjct: 144 FDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 180 IVQTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIE 231
++TL + PV+ + S +G+YI A +T+K WD + +K+Y C
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 259
Query: 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-- 289
+ S+ G V+G ED V ++ T + +GH V P AS +
Sbjct: 260 NFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 317
Query: 290 EDGTIRIWQT 299
D TI++W++
Sbjct: 318 NDKTIKLWKS 327
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 146/310 (47%), Gaps = 22/310 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 65
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 66 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179
++ +RI+D+ + + P V+ +H D +++ + + G R+WD SG+
Sbjct: 126 FDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 181
Query: 180 IVQTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIE 231
++TL + PV+ + S +G+YI A +T+K WD + +K+Y C
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 241
Query: 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-- 289
+ S+ G V+G ED V ++ T + +GH V P AS +
Sbjct: 242 NFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 299
Query: 290 EDGTIRIWQT 299
D TI++W++
Sbjct: 300 NDKTIKLWKS 309
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 144/308 (46%), Gaps = 18/308 (5%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIV 181
++ +RI+D+ + + + V V + I+S+ D G R+WD SG+ +
Sbjct: 130 FDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTASGQCL 187
Query: 182 QTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIESA 233
+TL + PV+ + S +G+YI A +T+K WD + +K+Y C +
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS--ED 291
S+ G V+G ED V ++ T + +GH V P AS + D
Sbjct: 248 SVTG--GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 292 GTIRIWQT 299
TI++W++
Sbjct: 306 KTIKLWKS 313
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 144/308 (46%), Gaps = 18/308 (5%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L ++S D + G + T GHK
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLAASSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIV 181
++ +RI+D+ + + + V V + I+S+ D G R+WD SG+ +
Sbjct: 130 FDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTASGQCL 187
Query: 182 QTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIESA 233
+TL + PV+ + S +G+YI A +T+K WD + +K+Y C +
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS--ED 291
S+ G V+G ED V ++ T + +GH V P AS + D
Sbjct: 248 SVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 292 GTIRIWQT 299
TI++W++
Sbjct: 306 KTIKLWKS 313
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 143/308 (46%), Gaps = 18/308 (5%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIV 181
++ +RI+D+ + + + V V + I+S+ D G R+WD SG+ +
Sbjct: 130 FDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTASGQCL 187
Query: 182 QTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIESA 233
+TL + PV+ + S +G+YI A + +K WD + +K+Y C +
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS--ED 291
S+ G V+G ED V ++ T + +GH V P AS + D
Sbjct: 248 SVTG--GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 292 GTIRIWQT 299
TI++W++
Sbjct: 306 KTIKLWKS 313
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 144/308 (46%), Gaps = 18/308 (5%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIV 181
++ +RI+D+ + + + V V + I+S+ D G R+WD SG+ +
Sbjct: 130 FDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTASGQCL 187
Query: 182 QTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIESA 233
+TL + PV+ + S +G+YI A +T+K WD + +K+Y C +
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS--ED 291
S+ G V+G ED V ++ T + +GH V P AS + D
Sbjct: 248 SVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 292 GTIRIWQT 299
TI+++++
Sbjct: 306 KTIKLYKS 313
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 144/308 (46%), Gaps = 18/308 (5%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGG 121
+ +++ SAS D + K+WD +G L + + H + V C+F+ ++L+++G
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIV 181
++ +RI+D+ + + + V V + I+S+ D G R+WD SG+ +
Sbjct: 130 FDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTASGQCL 187
Query: 182 QTL--ETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-----MPCTIESA 233
+TL + PV+ + S +G+YI A +T+K WD + +K+Y C +
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS--ED 291
S+ G V+G ED V ++ T + +GH V P AS + D
Sbjct: 248 SVTG--GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 292 GTIRIWQT 299
TI+++++
Sbjct: 306 KTIKLFKS 313
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 116/270 (42%), Gaps = 19/270 (7%)
Query: 33 FLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALT 92
+IS S D + + N ETG+ I T GH V C+ + R S S D + +VWD T
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIET 228
Query: 93 GDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPRE--VDRSPGSVR 149
G LH H VR + D +++G + +++++D P E + G
Sbjct: 229 GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD------PETETCLHTLQGHTN 280
Query: 150 TVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGST 209
V L D + + + +R+WDV +G + TL +TS +D ++ ST
Sbjct: 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADST 340
Query: 210 VKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFV-AGGEDMWVRFFDFHTGNEIAC--- 265
VK WD +++ P +SA ++ FV +D V+ +D TG I
Sbjct: 341 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 400
Query: 266 --NKGHHGPVHCVRFSPGGESYASGSEDGT 293
+ G G V +R S A GS +GT
Sbjct: 401 LESGGSGGVVWRIRASNTKLVCAVGSRNGT 430
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 138/301 (45%), Gaps = 24/301 (7%)
Query: 3 KKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKG 62
+ ++ P V GH V+ + + G ++S S D++ + + TG + T GH G
Sbjct: 105 RGELKSPKVLKGHDDHVI----TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 160
Query: 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHS-FEHKHIVRACSFSEDTHLLLTGG 121
VWS + N + S S D + KVW+A TG+ +H+ + H VR E +++G
Sbjct: 161 GVWSSQMRDNII--ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGS 216
Query: 122 MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSD-QTILSTCTDMGGVRLWDVRSGEI 180
+ LR++D+ + G V V + D + ++S D V++WD +
Sbjct: 217 RDATLRVWDIETGQC----LHVLMGHVAAVRCVQYDGRRVVSGAYDF-MVKVWDPETETC 271
Query: 181 VQTLETKSPVTSAEVSQDGRYITTADGST-VKFWDANHFGLVKSYNMPCTIESASLEPKY 239
+ TL+ + + + DG ++ + T ++ WD + + ++ S +E K
Sbjct: 272 LHTLQGHTNRVYS-LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG-MELK- 328
Query: 240 GNKFVAGGEDMWVRFFDFHTGNEIACNKG---HHGPVHCVRFSPGGESYASGSEDGTIRI 296
N V+G D V+ +D TG + +G H V C++F+ + S+DGT+++
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 297 W 297
W
Sbjct: 387 W 387
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 128/290 (44%), Gaps = 36/290 (12%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GH PV + + P+ ++SAS+D++ + + ETGD+ T +GH +V D +
Sbjct: 106 GHRSPVTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 74 LRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132
AS SAD + K+WD + + + H H V + S + +++ +K ++++++
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Query: 133 RPDAPPREVDRSPGSVRTVAWLHSDQ--TILSTCTDMGGVRLWDVRSGEIVQTL-ETKSP 189
V G V + +Q T++++C++ VR+W V + E L E +
Sbjct: 223 TGYC----VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 278
Query: 190 VTSAEVSQDGRY--ITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGG 247
V + + Y I+ A GS K S +P G ++G
Sbjct: 279 VECISWAPESSYSSISEATGSETK---------------------KSGKP--GPFLLSGS 315
Query: 248 EDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
D ++ +D TG + GH V V F GG+ S ++D T+R+W
Sbjct: 316 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 103/250 (41%), Gaps = 42/250 (16%)
Query: 56 TFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDT 114
T +GH G V+S SAS D VW+ALT H+ + H V C+F+ +
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 115 HLLLTGGMEKILRIFDL----NRPDAPP--REVDRSPGSVRTVAWLHSDQTILSTCTDMG 168
+ GG++ IF+L +R P R + G + ++ +T L T +
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 169 GVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPC 228
LWDV +G+ + ++ P TAD
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGH-----------TAD---------------------- 207
Query: 229 TIESASLEPKYGNKFVAGGEDMWVRFFDFH-TGNEIACNKGHHGPVHCVRFSPGGESYAS 287
+ S S+ N F++G D VR +D T + GH G ++ V+F P G+ + +
Sbjct: 208 -VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT 266
Query: 288 GSEDGTIRIW 297
GS+DGT R++
Sbjct: 267 GSDDGTCRLF 276
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 115/297 (38%), Gaps = 57/297 (19%)
Query: 56 TFEGHKGAVWSCCLD--TNALRAASASADFSAKVWDALTGDVLHSFEHKHI-VRACSFSE 112
T +GH V C+D + R S+S D VWD+ T + H+ V AC+++
Sbjct: 59 TLKGHGNKVL--CMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP 116
Query: 113 DTHLLLTGGMEKILRIFDLN-----RPDAPPREVDRSPGSVRTVAWLHSDQTILST---- 163
+ GG++ ++ L A + V + ++ +SD IL+
Sbjct: 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG 176
Query: 164 ------------------------CTDM-----------GG----VRLWDVRSGEIVQTL 184
C D+ GG +WD+RSG+ VQ
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 185 ET-KSPVTSAEVSQDG-RYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLE--PKYG 240
ET +S V S G + + +D +T + +D V Y+ I AS G
Sbjct: 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296
Query: 241 NKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
AG D + +D G+ ++ GH V +R SP G ++ SGS D T+R+W
Sbjct: 297 RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 34 LISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRA----ASASADFSAKVWD 89
+++AS D + L + E+G + +F GH V CLD S D A VWD
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVL--CLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 90 ALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVD-RSPGS 147
+G + +FE H+ V + + +G + R++DL R D REV S S
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL-RAD---REVAIYSKES 282
Query: 148 V----RTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTL-ETKSPVTSAEVSQDG 199
+ +V + S + + + D + +WDV G V L ++ V++ VS DG
Sbjct: 283 IIFGASSVDFSLSGRLLFAGYNDY-TINVWDVLKGSRVSILFGHENRVSTLRVSPDG 338
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 27/246 (10%)
Query: 96 LH-SFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRS-----PGSVR 149
LH S +H +V FS D L TG K +++ ++ R D S P ++
Sbjct: 57 LHKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLN 115
Query: 150 TVAWLHSDQTILSTCTDMGG-----------VRLWDVRSGEIVQTLET-KSPVTSAEVSQ 197
T + SD I S C G +R+WD+ + +IV L+ + + S +
Sbjct: 116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 175
Query: 198 DGRYITTADGS-TVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFD 256
G + + G TV+ WD + ++ + + ++ P G AG D VR +D
Sbjct: 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Query: 257 FHTG-------NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTNDDTET 309
TG +E GH V+ V F+ G+S SGS D ++++W N
Sbjct: 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295
Query: 310 LTANGT 315
+GT
Sbjct: 296 TPNSGT 301
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 126/299 (42%), Gaps = 46/299 (15%)
Query: 16 SRPVVDLFYSPI--TPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
S P DL+ + +PDG FL + ++D + + E + +GH+ ++S +
Sbjct: 118 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 177
Query: 74 LRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSE-DTHLLLTGGMEKILRIFD-- 130
+ S S D + ++WD TG + + V + S D + G +++ +R++D
Sbjct: 178 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 131 ----LNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET 186
+ R D+ SV +V + Q+++S D V+LW++++ ++
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNAN--NKSDS 294
Query: 187 KSPVT-SAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVA 245
K+P + + EV+ G H V S + + +Y ++
Sbjct: 295 KTPNSGTCEVTYIG-----------------HKDFVLSV-------ATTQNDEY---ILS 327
Query: 246 GGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGG------ESYASGSEDGTIRIWQ 298
G +D V F+D +GN + +GH V V + G +A+GS D RIW+
Sbjct: 328 GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 22/139 (15%)
Query: 179 EIVQTLETKSPVTSAEVSQDGRYITT-----------ADGSTVKFW--------DANHFG 219
E+ ++L+ S V + S DG Y+ T +DGS V D +
Sbjct: 56 ELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLN 115
Query: 220 LVKSYNMPCTIESASLEPKYGNKFVA-GGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRF 278
S + I S P KF+A G ED +R +D + +GH ++ + +
Sbjct: 116 TSSSPSSDLYIRSVCFSPD--GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 173
Query: 279 SPGGESYASGSEDGTIRIW 297
P G+ SGS D T+RIW
Sbjct: 174 FPSGDKLVSGSGDRTVRIW 192
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 18/193 (9%)
Query: 124 KILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQT 183
K+ I +L P A ++ V +AW H +I+ T + G +RLW+ ++G ++
Sbjct: 87 KLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV-TGVENGELRLWN-KTGALLNV 144
Query: 184 LET-KSPVTSAEVSQDGRYITTADGSTVK-FWDA------NHFGLVKSYNMPCTIESASL 235
L ++P+ S + ++DG +I + D V W+ HF L ++ E+ S
Sbjct: 145 LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204
Query: 236 EPKYG--------NKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYAS 287
+ G +KFV G + + GHHGP+ + F+ + S
Sbjct: 205 DGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264
Query: 288 GSEDGTIRIWQTG 300
S+DGT+RIW G
Sbjct: 265 ASDDGTLRIWHGG 277
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 118/276 (42%), Gaps = 22/276 (7%)
Query: 2 DKKKIAVPLVC-HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSF-------EHKHIVRACSFSED 113
K V S +D A S S D + KVW + G L + +V +D
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 114 THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173
+ +++ G +K+++ ++LN+ + + ++ T+ D T++++ G + LW
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLT-ASPDGTLIASAGKDGEIMLW 223
Query: 174 DVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESA 233
++ + + + TL + V S S + ++ A + +K + + LV SA
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSA 283
Query: 234 SLEPKY--------GNKFVAGGEDMWVRFFDFHTGN 261
+ EP G AG D +R + T N
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 93/261 (35%), Gaps = 64/261 (24%)
Query: 55 GTFEGHKGAVWSCCLDTNALR---AASASADFSAKVWDALTGD------VLHSFE-HKHI 104
GT EGH G W L T+A + SAS D + W LTGD + SF+ H HI
Sbjct: 11 GTLEGHNG--WVTSLATSAGQPNLLLSASRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164
V+ C+ + D L+ +K LR
Sbjct: 68 VQDCTLTADGAYALSASWDKTLR------------------------------------- 90
Query: 165 TDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVK 222
LWDV +GE Q KS V S ++ + I + T+K W L
Sbjct: 91 -------LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT 143
Query: 223 SYNMPCTIESASLEPKYGN-----KFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVR 277
+ + P ++ G D V+ ++ + A GH+ ++ +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 278 FSPGGESYASGSEDGTIRIWQ 298
SP G AS +DG I +W
Sbjct: 204 ASPDGTLIASAGKDGEIMLWN 224
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 19/275 (6%)
Query: 2 DKKKIAVPL-VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60
D+ +P GHS V D+ I+ DG F +S S D + L + TG F GH
Sbjct: 71 DETNYGIPQRALRGHSHFVSDVV---ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 127
Query: 61 KGAVWSCCLDTNALRAASASADFSAKVWDAL--TGDVLHSFEHKHIVRACSFSEDTH--L 116
V S ++ + S S D + K+W+ L + H V FS ++ +
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187
Query: 117 LLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR 176
+++ G +K++++++L + + G + TV + D ++ ++ G LWD+
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHIGHT-GYLNTVT-VSPDGSLCASGGKDGQAMLWDLN 245
Query: 177 SGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLE 236
G+ + TL+ + + S + ++ A G ++K WD +V S+ E
Sbjct: 246 EGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE 305
Query: 237 PKY---------GNKFVAGGEDMWVRFFDFHTGNE 262
P G AG D VR + G
Sbjct: 306 PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 14/193 (7%)
Query: 116 LLLTGGMEKILRIFDLNRPDA----PPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVR 171
++L+ +K + ++ L R + P R + V V Q LS D G +R
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-GTLR 111
Query: 172 LWDVRSGEIVQTL--ETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGL----VKSYN 225
LWD+ +G + TK ++ A S + + ++ + T+K W N G+ V+ +
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW--NTLGVCKYTVQDES 169
Query: 226 MPCTIESASLEPKYGNKF-VAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGES 284
+ P N V+ G D V+ ++ + GH G ++ V SP G
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 229
Query: 285 YASGSEDGTIRIW 297
ASG +DG +W
Sbjct: 230 CASGGKDGQAMLW 242
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 240 GNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
G ++G D +R +D TG GH V V FS SGS D TI++W T
Sbjct: 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 19/275 (6%)
Query: 2 DKKKIAVPL-VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60
D+ +P GHS V D+ I+ DG F +S S D + L + TG F GH
Sbjct: 48 DETNYGIPQRALRGHSHFVSDVV---ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 104
Query: 61 KGAVWSCCLDTNALRAASASADFSAKVWDAL--TGDVLHSFEHKHIVRACSFSEDTH--L 116
V S ++ + S S D + K+W+ L + H V FS ++ +
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164
Query: 117 LLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR 176
+++ G +K++++++L + + G + TV + D ++ ++ G LWD+
Sbjct: 165 IVSCGWDKLVKVWNLANCKLKTNHIGHT-GYLNTVT-VSPDGSLCASGGKDGQAMLWDLN 222
Query: 177 SGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLE 236
G+ + TL+ + + S + ++ A G ++K WD +V S+ E
Sbjct: 223 EGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE 282
Query: 237 PKY---------GNKFVAGGEDMWVRFFDFHTGNE 262
P G AG D VR + G
Sbjct: 283 PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 14/193 (7%)
Query: 116 LLLTGGMEKILRIFDLNRPDA----PPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVR 171
++L+ +K + ++ L R + P R + V V Q LS D G +R
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-GTLR 88
Query: 172 LWDVRSGEIVQTL--ETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGL----VKSYN 225
LWD+ +G + TK ++ A S + + ++ + T+K W N G+ V+ +
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW--NTLGVCKYTVQDES 146
Query: 226 MPCTIESASLEPKYGNKF-VAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGES 284
+ P N V+ G D V+ ++ + GH G ++ V SP G
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 206
Query: 285 YASGSEDGTIRIW 297
ASG +DG +W
Sbjct: 207 CASGGKDGQAMLW 219
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 240 GNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
G ++G D +R +D TG GH V V FS SGS D TI++W T
Sbjct: 75 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 134
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 34/244 (13%)
Query: 68 CLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIV-----RACSFSEDTHLLLTGGM 122
CL + + S D + K+WD ++ E K I+ D +++TG
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDK------NTLECKRILTGHTGSVLCLQYDERVIITGSS 191
Query: 123 EKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGE--I 180
+ +R++D+N + ++ V L + ++ TC+ + +WD+ S
Sbjct: 192 DSTVRVWDVNTGEM----LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 247
Query: 181 VQTLETKSPVTSAEVSQDGRYITTADG-STVKFWDANHFGLVKSYN-----MPCTIESAS 234
++ + V D +YI +A G T+K W+ + V++ N + C
Sbjct: 248 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL----- 302
Query: 235 LEPKYGNKFV-AGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGT 293
+Y ++ V +G D +R +D G + +GH V C+RF + SG+ DG
Sbjct: 303 ---QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK 357
Query: 294 IRIW 297
I++W
Sbjct: 358 IKVW 361
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 44/221 (19%)
Query: 34 LISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG 93
++S +D++ + + T + GH G+V CL + + S+D + +VWD TG
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTG 203
Query: 94 DVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRP-DAPPREV----------- 141
++L++ H H + +++T ++ + ++D+ P D R V
Sbjct: 204 EMLNTLIH-HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 262
Query: 142 ------------DRS---------------PGSVRTVAWL-HSDQTILSTCTDMGGVRLW 173
DR+ G R +A L + D+ ++S +D +RLW
Sbjct: 263 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSD-NTIRLW 321
Query: 174 DVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWD 214
D+ G ++ LE + + R ++ A +K WD
Sbjct: 322 DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 362
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 24/257 (9%)
Query: 56 TFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHI-VRACSFSEDT 114
T GH +++ T++ SAS D +WD+ T + +H+ + V C+++
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 115 HLLLTGGMEKILRIFDLNRPDAP---PREVDRSPGSVRTVAWLHSDQTILS----TCTDM 167
+ + GG++ I I++L + RE+ G + +L +Q + S TC
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 178
Query: 168 GGVRLWDVRSGEIVQTLETKS-PVTSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYN 225
LWD+ +G+ T + V S ++ D R +++ A ++ K WD +++
Sbjct: 179 ----LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 234
Query: 226 -MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHC----VRFSP 280
I + P GN F G +D R FD E+ H + C V FS
Sbjct: 235 GHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELM--TYSHDNIICGITSVSFSK 291
Query: 281 GGESYASGSEDGTIRIW 297
G +G +D +W
Sbjct: 292 SGRLLLAGYDDFNCNVW 308
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASAS 80
D+ + PD +S + D+S L + G TF GH+ + + C N A+ S
Sbjct: 197 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 256
Query: 81 ADFSAKVWDALTGDVLHSFEHKHI---VRACSFSEDTHLLLTGGMEKILRIFDLNRPD 135
D + +++D L ++ H +I + + SFS+ LLL G + ++D + D
Sbjct: 257 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 314
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 34 LISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG 93
++++S D++ L + ETG TF GH G V S L + S + D SAK+WD G
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 94 DVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREV--DRSPGSVRT 150
+F H+ + A F + + TG + R+FDL R D D + +
Sbjct: 228 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 286
Query: 151 VAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTAD-GS 208
V++ S + +L+ D +WD + L + V+ V+ DG + T S
Sbjct: 287 VSFSKSGRLLLAGYDDF-NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 345
Query: 209 TVKFWD 214
+K W+
Sbjct: 346 FLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 24/257 (9%)
Query: 56 TFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHI-VRACSFSEDT 114
T GH +++ T++ SAS D +WD+ T + +H+ + V C+++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGMEKILRIFDLNRPDAP---PREVDRSPGSVRTVAWLHSDQTILS----TCTDM 167
+ + GG++ I I++L + RE+ G + +L +Q + S TC
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 168 GGVRLWDVRSGEIVQTLETKS-PVTSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYN 225
LWD+ +G+ T + V S ++ D R +++ A ++ K WD +++
Sbjct: 168 ----LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 226 -MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHC----VRFSP 280
I + P GN F G +D R FD E+ H + C V FS
Sbjct: 224 GHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELM--TYSHDNIICGITSVSFSK 280
Query: 281 GGESYASGSEDGTIRIW 297
G +G +D +W
Sbjct: 281 SGRLLLAGYDDFNCNVW 297
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASAS 80
D+ + PD +S + D+S L + G TF GH+ + + C N A+ S
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 81 ADFSAKVWDALTGDVLHSFEHKHI---VRACSFSEDTHLLLTGGMEKILRIFDLNRPD 135
D + +++D L ++ H +I + + SFS+ LLL G + ++D + D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 34 LISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG 93
++++S D++ L + ETG TF GH G V S L + S + D SAK+WD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 94 DVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREV--DRSPGSVRT 150
+F H+ + A F + + TG + R+FDL R D D + +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 151 VAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTAD-GS 208
V++ S + +L+ D +WD + L + V+ V+ DG + T S
Sbjct: 276 VSFSKSGRLLLAGYDDF-NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 209 TVKFWD 214
+K W+
Sbjct: 335 FLKIWN 340
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 117/276 (42%), Gaps = 22/276 (7%)
Query: 2 DKKKIAVPLVC-HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSF-------EHKHIVRACSFSED 113
K V S +D A S S D + KVW + G L + +V +D
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 114 THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173
+ +++ G +K+++ ++LN+ + + ++ T+ D T++++ G + LW
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLT-ASPDGTLIASAGKDGEIMLW 223
Query: 174 DVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESA 233
++ + + + TL + V S S + ++ A + +K + + LV S
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 283
Query: 234 SLEPKY--------GNKFVAGGEDMWVRFFDFHTGN 261
+ EP G AG D +R + T N
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 93/261 (35%), Gaps = 64/261 (24%)
Query: 55 GTFEGHKGAVWSCCLDTNALR---AASASADFSAKVWDALTGD------VLHSFE-HKHI 104
GT EGH G W L T+A + SAS D + W LTGD + SF+ H HI
Sbjct: 11 GTLEGHNG--WVTSLATSAGQPNLLLSASRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164
V+ C+ + D L+ +K LR
Sbjct: 68 VQDCTLTADGAYALSASWDKTLR------------------------------------- 90
Query: 165 TDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVK 222
LWDV +GE Q KS V S ++ + I + T+K W L
Sbjct: 91 -------LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT 143
Query: 223 SYNMPCTIESASLEPKYGN-----KFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVR 277
+ + P ++ G D V+ ++ + A GH+ ++ +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 278 FSPGGESYASGSEDGTIRIWQ 298
SP G AS +DG I +W
Sbjct: 204 ASPDGTLIASAGKDGEIMLWN 224
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 24/257 (9%)
Query: 56 TFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHI-VRACSFSEDT 114
T GH +++ T++ SAS D +WD+ T + +H+ + V C+++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGMEKILRIFDLNRPDAP---PREVDRSPGSVRTVAWLHSDQTILS----TCTDM 167
+ + GG++ I I++L + RE+ G + +L +Q + S TC
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 168 GGVRLWDVRSGEIVQTLETKS-PVTSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYN 225
LWD+ +G+ T + V S ++ D R +++ A ++ K WD +++
Sbjct: 168 ----LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 226 -MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHC----VRFSP 280
I + P GN F G +D R FD E+ H + C V FS
Sbjct: 224 GHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELM--TYSHDNIICGITSVSFSK 280
Query: 281 GGESYASGSEDGTIRIW 297
G +G +D +W
Sbjct: 281 SGRLLLAGYDDFNCNVW 297
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASAS 80
D+ + PD +S + D+S L + G TF GH+ + + C N A+ S
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 81 ADFSAKVWDALTGDVLHSFEHKHI---VRACSFSEDTHLLLTGGMEKILRIFDLNRPD 135
D + +++D L ++ H +I + + SFS+ LLL G + ++D + D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 34 LISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG 93
++++S D++ L + ETG TF GH G V S L + S + D SAK+WD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 94 DVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREV--DRSPGSVRT 150
+F H+ + A F + + TG + R+FDL R D D + +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 151 VAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTAD-GS 208
V++ S + +L+ D +WD + L + V+ V+ DG + T S
Sbjct: 276 VSFSKSGRLLLAGYDDF-NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 209 TVKFWD 214
+K W+
Sbjct: 335 FLKIWN 340
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 129/305 (42%), Gaps = 48/305 (15%)
Query: 2 DKKKIAVPLVC-HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSF-------EHKHIVRACSFSED 113
K V S +D A S S D + KVW + G L + +V +D
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 114 THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173
+ +++ G +K+++ ++LN+ + + ++ T+ D T++++ G + LW
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLT-ASPDGTLIASAGKDGEIMLW 223
Query: 174 DVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESA 233
++ + + + TL + V S S + ++ A + +K +
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF-------------------- 263
Query: 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGT 293
SL+P+Y V +D+ F + +K + +S G++ +G D
Sbjct: 264 SLDPQY---LV---DDLRPEFAGY--------SKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 294 IRIWQ 298
IR+WQ
Sbjct: 310 IRVWQ 314
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 117/276 (42%), Gaps = 22/276 (7%)
Query: 2 DKKKIAVPLVC-HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 44 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 61 KGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSF-------EHKHIVRACSFSED 113
K V S +D A S S D + KVW + G L + +V +D
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 159
Query: 114 THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173
+ +++ G +K+++ ++LN+ + + ++ T+ D T++++ G + LW
Sbjct: 160 SVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLT-ASPDGTLIASAGKDGEIMLW 217
Query: 174 DVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESA 233
++ + + + TL + V S S + ++ A + +K + + LV S
Sbjct: 218 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 277
Query: 234 SLEPKY--------GNKFVAGGEDMWVRFFDFHTGN 261
+ EP G AG D +R + T N
Sbjct: 278 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 93/261 (35%), Gaps = 64/261 (24%)
Query: 55 GTFEGHKGAVWSCCLDTNALR---AASASADFSAKVWDALTGD------VLHSFE-HKHI 104
GT EGH G W L T+A + SAS D + W LTGD + SF+ H HI
Sbjct: 5 GTLEGHNG--WVTSLATSAGQPNLLLSASRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 61
Query: 105 VRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164
V+ C+ + D L+ +K LR
Sbjct: 62 VQDCTLTADGAYALSASWDKTLR------------------------------------- 84
Query: 165 TDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVK 222
LWDV +GE Q KS V S ++ + I + T+K W L
Sbjct: 85 -------LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT 137
Query: 223 SYNMPCTIESASLEPKYGN-----KFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVR 277
+ + P ++ G D V+ ++ + A GH+ ++ +
Sbjct: 138 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 197
Query: 278 FSPGGESYASGSEDGTIRIWQ 298
SP G AS +DG I +W
Sbjct: 198 ASPDGTLIASAGKDGEIMLWN 218
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 129/305 (42%), Gaps = 48/305 (15%)
Query: 2 DKKKIAVPLVC-HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSF-------EHKHIVRACSFSED 113
K V S +D A S S D + KVW + G L + +V +D
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 114 THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173
+ +++ G +K+++ ++LN+ + + ++ T+ D T++++ G + LW
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLT-ASPDGTLIASAGKDGEIMLW 223
Query: 174 DVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESA 233
++ + + + TL + V S S + ++ A + +K +
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF-------------------- 263
Query: 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGT 293
SL+P+Y V +D+ F + +K + +S G++ +G D
Sbjct: 264 SLDPQY---LV---DDLRPEFAGY--------SKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 294 IRIWQ 298
IR+WQ
Sbjct: 310 IRVWQ 314
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 24/257 (9%)
Query: 56 TFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHI-VRACSFSEDT 114
T GH +++ T++ SAS D +WD+ T + +H+ + V C+++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGMEKILRIFDLNRPDAP---PREVDRSPGSVRTVAWLHSDQTILS----TCTDM 167
+ + GG++ I I++L + RE+ G + +L +Q + S TC
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 168 GGVRLWDVRSGEIVQTLETKS-PVTSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYN 225
LWD+ +G+ T + V S ++ D R +++ A ++ K WD +++
Sbjct: 168 ----LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 226 -MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHC----VRFSP 280
I + P GN F G +D R FD E+ H + C V FS
Sbjct: 224 GHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELM--TYSHDNIICGITSVSFSK 280
Query: 281 GGESYASGSEDGTIRIW 297
G +G +D +W
Sbjct: 281 SGRLLLAGYDDFNCNVW 297
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASAS 80
D+ + PD +S + D+S L + G TF GH+ + + C N A+ S
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 81 ADFSAKVWDALTGDVLHSFEHKHI---VRACSFSEDTHLLLTGGMEKILRIFDLNRPD 135
D + +++D L ++ H +I + + SFS+ LLL G + ++D + D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 34 LISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG 93
++++S D++ L + ETG TF GH G V S L + S + D SAK+WD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 94 DVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREV--DRSPGSVRT 150
+F H+ + A F + + TG + R+FDL R D D + +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 151 VAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTAD-GS 208
V++ S + +L+ D +WD + L + V+ V+ DG + T S
Sbjct: 276 VSFSKSGRLLLAGYDDF-NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 209 TVKFWD 214
+K W+
Sbjct: 335 FLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 24/257 (9%)
Query: 56 TFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHI-VRACSFSEDT 114
T GH +++ T++ SAS D +WD+ T + +H+ + V C+++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGMEKILRIFDLNRPDAP---PREVDRSPGSVRTVAWLHSDQTILS----TCTDM 167
+ + GG++ I I++L + RE+ G + +L +Q + S TC
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA-- 167
Query: 168 GGVRLWDVRSGEIVQTLETKS-PVTSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYN 225
LWD+ +G+ T + V S ++ D R +++ A ++ K WD +++
Sbjct: 168 ----LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 226 -MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHC----VRFSP 280
I + P GN F G +D R FD E+ H + C V FS
Sbjct: 224 GHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELM--TYSHDNIICGITSVSFSK 280
Query: 281 GGESYASGSEDGTIRIW 297
G +G +D +W
Sbjct: 281 SGRLLLAGYDDFNCNVW 297
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASAS 80
D+ + PD +S + D+S L + G TF GH+ + + C N A+ S
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 81 ADFSAKVWDALTGDVLHSFEHKHI---VRACSFSEDTHLLLTGGMEKILRIFDLNRPD 135
D + +++D L ++ H +I + + SFS+ LLL G + ++D + D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 34 LISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG 93
++++S D++ L + ETG TF GH G V S L + S + D SAK+WD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 94 DVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREV--DRSPGSVRT 150
+F H+ + A F + + TG + R+FDL R D D + +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 151 VAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTAD-GS 208
V++ S + +L+ D +WD + L + V+ V+ DG + T S
Sbjct: 276 VSFSKSGRLLLAGYDDF-NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 209 TVKFWD 214
+K W+
Sbjct: 335 FLKIWN 340
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 13/252 (5%)
Query: 57 FEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSF-EHKHIVRACSFSEDTH 115
EGH V L N A SAS D S ++W+ G + F H V + +FS D
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 116 LLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHS-DQTILSTCTDMGGVRLWD 174
+++GG + LR++++ V V + S D ++ + V++WD
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 175 VRSGEIVQTLETKSP-VTSAEVSQDGRYITTADGSTV-KFWDANHFGLVKSYNMPCTIES 232
+ +G +V L+ + VTS VS DG ++D V + WD + I
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQ 242
Query: 233 ASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIA-CNKGHHGPV----HCVR--FSPGGESY 285
P ++ + +R FD + I H G CV +S G +
Sbjct: 243 ICFSPN--RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTL 300
Query: 286 ASGSEDGTIRIW 297
SG D IR+W
Sbjct: 301 YSGYTDNVIRVW 312
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 15/208 (7%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GHS V D+ ++ +G F +SAS D S L N + G F GH V S +
Sbjct: 65 GHSAFVSDV---ALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 74 LRAASASADFSAKVWDALTGDVLHSFE---HKHIVRACSFSE--DTHLLLTGGMEKILRI 128
+ S D + +VW+ + G+ +H+ H V FS D ++++GG + ++++
Sbjct: 122 RQIVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 129 FDLNRPDAPPREVDRSPGSVRTV--AWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET 186
+DL A R V G V + D ++ ++ G RLWD+ GE + +
Sbjct: 181 WDL----ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA 236
Query: 187 KSPVTSAEVSQDGRYITTADGSTVKFWD 214
+P+ S + ++ A ++ +D
Sbjct: 237 GAPINQICFSPNRYWMCAATEKGIRIFD 264
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 115/276 (41%), Gaps = 22/276 (7%)
Query: 2 DKKKIAVPLVC-HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSF-------EHKHIVRACSFSED 113
K V S +D A S S D + KVW + G L + +V +D
Sbjct: 107 KSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 114 THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173
+ +++ G +K ++ ++LN+ + + ++ T+ D T++++ G + LW
Sbjct: 166 SVTIISAGNDKXVKAWNLNQFQIEADFIGHN-SNINTLT-ASPDGTLIASAGKDGEIXLW 223
Query: 174 DVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESA 233
++ + + TL + V S S + ++ A + +K + + LV S
Sbjct: 224 NLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 283
Query: 234 SLEPKY--------GNKFVAGGEDMWVRFFDFHTGN 261
+ EP G AG D +R + T N
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 93/261 (35%), Gaps = 64/261 (24%)
Query: 55 GTFEGHKGAVWSCCLDTNALR---AASASADFSAKVWDALTGD------VLHSFE-HKHI 104
GT EGH G W L T+A + SAS D + W LTGD + SF+ H HI
Sbjct: 11 GTLEGHNG--WVTSLATSAGQPNLLLSASRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164
V+ C+ + D L+ +K LR
Sbjct: 68 VQDCTLTADGAYALSASWDKTLR------------------------------------- 90
Query: 165 TDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVK 222
LWDV +GE Q KS V S ++ + I + T+K W L
Sbjct: 91 -------LWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLAT 143
Query: 223 SYNMPCTIESASLEPKYGN-----KFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVR 277
+ + P ++ G D V+ ++ + A GH+ ++ +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 278 FSPGGESYASGSEDGTIRIWQ 298
SP G AS +DG I +W
Sbjct: 204 ASPDGTLIASAGKDGEIXLWN 224
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 125/300 (41%), Gaps = 48/300 (16%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GHS V D+ ++ DG F +S S D L + G F GH V S +
Sbjct: 428 GHSHFVEDVV---LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN 484
Query: 74 LRAASASADFSAKVWDALTGDVLHSFE-----HKHIVRACSFSEDTH--LLLTGGMEKIL 126
+ SAS D + K+W+ L G+ ++ H+ V FS +T +++ +K +
Sbjct: 485 RQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 127 RIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET 186
++++L+ + G V TVA + D ++ ++ G V LWD+ G+ + +LE
Sbjct: 544 KVWNLSNCKLRSTLAGHT-GYVSTVA-VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601
Query: 187 KSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAG 246
S + + S + ++ A +K WD +ES S+
Sbjct: 602 NSVIHALCFSPNRYWLCAATEHGIKIWD---------------LESKSIV---------- 636
Query: 247 GEDMWVRFFDFHTGNEIACNKG----HHGPVHC--VRFSPGGESYASGSEDGTIRIWQTG 300
ED+ V D E A N G ++C + +S G + SG DG IR+W G
Sbjct: 637 -EDLKV---DLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 90/251 (35%), Gaps = 46/251 (18%)
Query: 55 GTFEGHKGAVWSCCLDT-NALRAASASADFSAKVWDALTGDVLHSFE------HKHIVRA 107
GT H V + NA SAS D S +W D + H H V
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 108 CSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDM 167
S D L+G + LR++DL + R V + V +VA+ ++ I+S D
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK-DVLSVAFSLDNRQIVSASRDR 494
Query: 168 GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMP 227
++LW+ GE +Y + G + W +
Sbjct: 495 T-IKLWNTL-GEC-------------------KYTISEGGEGHRDW------------VS 521
Query: 228 CT-IESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYA 286
C +L+P V+ D V+ ++ + GH G V V SP G A
Sbjct: 522 CVRFSPNTLQPT----IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577
Query: 287 SGSEDGTIRIW 297
SG +DG + +W
Sbjct: 578 SGGKDGVVLLW 588
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 109/232 (46%), Gaps = 20/232 (8%)
Query: 75 RAASASADFSAKVW---DALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILR---I 128
+ AS S D + ++W D G V+++ + + + + + LLL GG + + +
Sbjct: 31 KVASVSRDGTVRLWSKDDQWLGTVVYT--GQGFLNSVCYDSEKELLLFGGKDTXINGVPL 88
Query: 129 FDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-K 187
F + D P + G+V ++++ D ++S D ++W + G +V L+
Sbjct: 89 FATSGED-PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTA-KVW--KEGSLVYNLQAHN 142
Query: 188 SPVTSAEVSQ--DGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVA 245
+ V A+V + +++T + T+K W + ++K+++ L F++
Sbjct: 143 ASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGHFIS 200
Query: 246 GGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
D ++ D HTG+ + +GH V+C++ P G+ + G ED T+RIW
Sbjct: 201 CSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIW 251
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 26 PITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSA 85
+ DG F IS S D L + TGD + T+EGH+ V+ L N S D +
Sbjct: 191 AVVDDGHF-ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTV 248
Query: 86 KVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIF 129
++W G + I ++ G + ++RIF
Sbjct: 249 RIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIF 292
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 34/198 (17%)
Query: 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCC 68
V + H++ V + + P L SAS D + L E DW+ T EGH+ VWS
Sbjct: 145 VLNSHTQDVKHVVWHPSQE---LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 69 LDTNALRAASASADFSAKVW-DALTGD-----------------VLHSFEHKHIVRACSF 110
D + R AS S D + ++W L G+ L F H + ++
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF-HSRTIYDIAW 260
Query: 111 SEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRS---------PGSVRTVAWLHSDQTIL 161
+ T L T + +R+F + P++ P++ S V VAW + +L
Sbjct: 261 CQLTGALATACGDDAIRVFQED-PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319
Query: 162 STCTDMGGVRLWDVRSGE 179
++C+D G V W + E
Sbjct: 320 ASCSDDGEVAFWKYQRPE 337
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 6 IAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPML--RNGETGDWIGTFEGHKGA 63
I ++ GH R V + +SP G +L SAS D++ + +N + + + T EGH+
Sbjct: 51 ICKSVLSEGHQRTVRKVAWSPC---GNYLASASFDATTCIWKKNQDDFECVTTLEGHENE 107
Query: 64 VWSCCLDTNALRAASASADFSAKVWDALTGD------VLHSFEHKHIVRACSFSEDTHLL 117
V S + A+ S D S VW+ D VL+S H V+ + LL
Sbjct: 108 VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS--HTQDVKHVVWHPSQELL 165
Query: 118 LTGGMEKILRIFDLNRPD-APPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173
+ + ++++ D ++ +V ++A+ S Q L++C+D VR+W
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIW 221
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 41/227 (18%)
Query: 77 ASASADFSAKVW----DALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132
AS D ++W D+ + S H+ VR ++S + L + + I+ N
Sbjct: 32 ASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91
Query: 133 RPD-APPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVT 191
+ D ++ V++VAW S +L+TC+ V +W+V + + + + T
Sbjct: 92 QDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT 150
Query: 192 SAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMW 251
D H S + + SAS + K ED W
Sbjct: 151 Q---------------------DVKHVVWHPSQEL---LASASYDDTV--KLYREEEDDW 184
Query: 252 VRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
V A +GH V + F P G+ AS S+D T+RIW+
Sbjct: 185 VC---------CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 96/248 (38%), Gaps = 51/248 (20%)
Query: 58 EGHKGAVWSCCLDT----NALRAASASADFSAKVWDALTG--DVLHSFE-HKHIVRACSF 110
+ H A+WS T N+ + S D KVW D+ S E H+ V +
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 111 SEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGV 170
S + + ++ +R++DL + +D P T+A D L+T T +G V
Sbjct: 89 SHTLPIAASSSLDAHIRLWDLENG-KQIKSIDAGPVDAWTLA-FSPDSQYLATGTHVGKV 146
Query: 171 RLWDVRSGEIVQTLETKSP-VTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCT 229
++ V SG+ +L+T+ + S S DG+Y+ +
Sbjct: 147 NIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS------------------------- 181
Query: 230 IESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS 289
G D + FD TG + +GH P+ + FSP + + S
Sbjct: 182 ----------------GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225
Query: 290 EDGTIRIW 297
+DG I+I+
Sbjct: 226 DDGYIKIY 233
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 5/168 (2%)
Query: 56 TFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHI-VRACSFSEDT 114
+ EGH+ V S + AAS+S D ++WD G + S + + +FS D+
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 115 HLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWD 174
L TG + IF + +D + ++A+ + + S D G + ++D
Sbjct: 135 QYLATGTHVGKVNIFGV-ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID-GIINIFD 192
Query: 175 VRSGEIVQTLETKS-PVTSAEVSQDGRYITTA-DGSTVKFWDANHFGL 220
+ +G+++ TLE + P+ S S D + + TA D +K +D H L
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
GH+ P+ L +SP D L++AS D + + + + GT GH V + +
Sbjct: 204 GHAMPIRSLTFSP---DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260
Query: 74 LRAASASADFSAKVWDALTGDVLHS-FEHKHIVRACSFSEDTHLLLTGGMEKILRIFD 130
S+S+D S KVWD T +H+ F+H+ V ++ + +++ G ++ + I+D
Sbjct: 261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 28 TPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKV 87
+PDG +L S + D + + TG + T EGH + S ++ +AS D K+
Sbjct: 173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232
Query: 88 WDALTGDVLHSFE-HKHIVRACSFS-EDTHL 116
+D ++ + H V +F +DTH
Sbjct: 233 YDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 127/322 (39%), Gaps = 40/322 (12%)
Query: 11 VCHGHSRPVVDL---FYSPITPDGFFLISASKDSSPML-------RNGETGDWIGTFEGH 60
+ GHS V + F D LIS S+D + M+ +NG G GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 61 KGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLT 119
V L A S+S D + ++WD TG F H+ V + +FS D +L+
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 120 GGMEKILRIFDL----NRPDAPPREVDRSPGSVRTVAWLHSDQTI------LSTCTDMGG 169
G E+ ++++++ A VR + S + ++ G
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 170 VRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGL-VKSYNM 226
+++W+ + +I T + +S V +S +G+YI T + WD + + ++
Sbjct: 196 LKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA 254
Query: 227 PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIAC-------------NKGHHGPV 273
TI + PK ++VA G D V+ F+ T ++ KG +
Sbjct: 255 GSTINQIAFNPKL--QWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC 312
Query: 274 HCVRFSPGGESYASGSEDGTIR 295
+ ++ G+ +G DG IR
Sbjct: 313 TSLAWNALGKKLFAGFTDGVIR 334
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 25/230 (10%)
Query: 111 SEDTHLLLTGGMEKILRIFDLNRPDA------PPREVDRSPGSVRTVAWLHSDQTILSTC 164
+ED+ +L++G +K + I+ L + P + + V +A + +S+
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 165 TDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTADGST-VKFWD-------- 214
D +RLWD+R+G + +S V S S D R I +A +K W+
Sbjct: 96 WDKT-LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS 154
Query: 215 ----ANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACN-KGH 269
NH V ++SA+ + F + G D R ++T +I K H
Sbjct: 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG--RLKVWNTNFQIRYTFKAH 212
Query: 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTNDDTETLTANGTIGKV 319
V+ + SP G+ A+G +D + IW +T E A TI ++
Sbjct: 213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE-FDAGSTINQI 261
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 104/260 (40%), Gaps = 49/260 (18%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRN--GETGDWIGTFEGHKGAVWSCCLDT 71
GH V + +SP D ++SA + L N GE E H V SC +
Sbjct: 116 GHQSEVYSVAFSP---DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV-SCVRYS 171
Query: 72 NALRAASASADFS-----------AKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLT 119
+++A+ F+ KVW+ + ++F+ H+ V S S + + T
Sbjct: 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT 230
Query: 120 GGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGE 179
GG +K L I+D+ P RE D GS + ++ TD GV+++++ +
Sbjct: 231 GGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVGTDQ-GVKIFNLMT-- 285
Query: 180 IVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKY 239
++K+PV + E IT A+G K N CT + +
Sbjct: 286 -----QSKAPVCTIEAEP----ITKAEGQ-------------KGKNPQCTSLAWN---AL 320
Query: 240 GNKFVAGGEDMWVRFFDFHT 259
G K AG D +R F F T
Sbjct: 321 GKKLFAGFTDGVIRTFSFET 340
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Query: 134 PDAPPREVD----RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSP 189
P P R +D R+ + V W S +L+ D V LW SG+I+Q L+ + P
Sbjct: 10 PSLPDRILDAPEIRNDYYLNLVDW--SSGNVLAVALD-NSVYLWSASSGDILQLLQMEQP 66
Query: 190 ---VTSAEVSQDGRYITTADGST-VKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFV- 244
++S ++G Y+ S V+ WD ++ NM T SA + N ++
Sbjct: 67 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--NM--TSHSARVGSLSWNSYIL 122
Query: 245 -AGGEDMWVRFFDFHTG-NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302
+G + D + +A GH V +R++P G ASG D + +W + P
Sbjct: 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182
Query: 303 TNDDTETLTANGTIGKVKVTA 323
T G VK A
Sbjct: 183 EGGWVPLQTFTQHQGAVKAVA 203
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 52/207 (25%)
Query: 101 HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAP-------PREVDRSPGSVRTVAW 153
H V ++ D L +GG + ++ ++ P AP + + G+V+ VAW
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVW----PSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 154 LHSDQTILSTC--TDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVK 211
+L+T T +R+W+V SG + ++ S V S
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI------------------ 246
Query: 212 FWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHG 271
W ++ L+ + N+ V + + T ++A KGH
Sbjct: 247 LWSPHYKELISGHGFA------------QNQLV---------IWKYPTMAKVAELKGHTS 285
Query: 272 PVHCVRFSPGGESYASGSEDGTIRIWQ 298
V + SP G + AS + D T+R+W+
Sbjct: 286 RVLSLTMSPDGATVASAAADETLRLWR 312
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 18/179 (10%)
Query: 134 PDAPPREVD----RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSP 189
P P R +D R+ + V W S +L+ D V LW SG+I+Q L+ + P
Sbjct: 90 PSLPDRILDAPEIRNDYYLNLVDW--SSGNVLAVALD-NSVYLWSASSGDILQLLQMEQP 146
Query: 190 ---VTSAEVSQDGRYITTADGST-VKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFV- 244
++S ++G Y+ S V+ WD ++ NM T SA + N ++
Sbjct: 147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--NM--TSHSARVGSLSWNSYIL 202
Query: 245 -AGGEDMWVRFFDFHTG-NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGP 301
+G + D + +A GH V +R++P G ASG D + +W + P
Sbjct: 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 52/207 (25%)
Query: 101 HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAP------PREV-DRSPGSVRTVAW 153
H V ++ D L +GG + ++ ++ P AP P + + G+V+ VAW
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVW----PSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 154 LHSDQTILSTC--TDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVK 211
+L+T T +R+W+V SG + ++ S V S
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI------------------ 326
Query: 212 FWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHG 271
W ++ L+ G+ F +W + T ++A KGH
Sbjct: 327 LWSPHYKELIS-----------------GHGFAQNQLVIW----KYPTMAKVAELKGHTS 365
Query: 272 PVHCVRFSPGGESYASGSEDGTIRIWQ 298
V + SP G + AS + D T+R+W+
Sbjct: 366 RVLSLTMSPDGATVASAAADETLRLWR 392
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Query: 134 PDAPPREVD----RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSP 189
P P R +D R+ + V W S +L+ D V LW SG+I+Q L+ + P
Sbjct: 101 PSLPDRILDAPEIRNDYYLNLVDW--SSGNVLAVALD-NSVYLWSASSGDILQLLQMEQP 157
Query: 190 ---VTSAEVSQDGRYITTADGST-VKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFV- 244
++S ++G Y+ S V+ WD ++ NM T SA + N ++
Sbjct: 158 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--NM--TSHSARVGSLSWNSYIL 213
Query: 245 -AGGEDMWVRFFDFHTG-NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302
+G + D + +A GH V +R++P G ASG D + +W + P
Sbjct: 214 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 273
Query: 303 TNDDTETLTANGTIGKVKVTA 323
T G VK A
Sbjct: 274 EGGWVPLQTFTQHQGAVKAVA 294
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 52/207 (25%)
Query: 101 HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAP------PREV-DRSPGSVRTVAW 153
H V ++ D L +GG + ++ ++ P AP P + + G+V+ VAW
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVW----PSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 154 LHSDQTILSTC--TDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVK 211
+L+T T +R+W+V SG + ++ S V S
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI------------------ 337
Query: 212 FWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHG 271
W ++ L+ G+ F +W + T ++A KGH
Sbjct: 338 LWSPHYKELIS-----------------GHGFAQNQLVIW----KYPTMAKVAELKGHTS 376
Query: 272 PVHCVRFSPGGESYASGSEDGTIRIWQ 298
V + SP G + AS + D T+R+W+
Sbjct: 377 RVLSLTMSPDGATVASAAADETLRLWR 403
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 16/240 (6%)
Query: 71 TNALRAASASADFSAKVWD-ALTGD-----VLHSFEHKHIVRACSFSEDTHLLLTGGMEK 124
+N R KVWD + G+ L + +R+C D L+ GG
Sbjct: 60 SNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
Query: 125 ILRIFDLNRPDAPPR---EVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIV 181
L I+DL P PR E+ S + +A + S C+D G + +WD+ + +V
Sbjct: 120 TLSIWDLAAPT--PRIKAELTSSAPACYALAISPDSKVCFSCCSD-GNIAVWDLHNQTLV 176
Query: 182 QTLETKSPVTSA-EVSQDGRYITTAD-GSTVKFWDANHFGLVKSYNMPCTIESASLEPKY 239
+ + + S ++S DG + T +TV+ WD ++ ++ I S P
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT- 235
Query: 240 GNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
G G E V + ++ + H V ++F+ G+ + S +D + W+T
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 3/181 (1%)
Query: 27 ITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAK 86
I+PD S D + + + + F+GH + + + + D + +
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208
Query: 87 VWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPG 146
WD G L + + + + L G + + +N+PD + S
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES-- 266
Query: 147 SVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTAD 206
V ++ + + + +ST D + W G + + S V S ++S D +YI T
Sbjct: 267 CVLSLKFAYCGKWFVSTGKD-NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGS 325
Query: 207 G 207
G
Sbjct: 326 G 326
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 12/203 (5%)
Query: 33 FLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALT 92
++I S D + N TG+ + FE H + S + S S D + K+W+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93 GDVL-HSFE-HKHIVRACSFS-EDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVR 149
L +FE H+H V +F+ +D +G +++ ++++ L + + G R
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQER 185
Query: 150 TVAWLH----SDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGR--YIT 203
V ++ D+ + T +D +++WD ++ V TLE S V I+
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 204 TADGSTVKFWDANHFGLVKSYNM 226
++ T+K W+++ + + K+ N+
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNV 268
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 11/203 (5%)
Query: 105 VRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164
VRA F + ++ G + +R+F+ N + + + P +R++A +H + + +
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFEAHPDYIRSIA-VHPTKPYVLSG 115
Query: 165 TDMGGVRLWDVRSG-EIVQTLETKSPVTSAEVSQDGRYITTADG---STVKFWDANH--- 217
+D V+LW+ + + QT E T A G TVK W
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175
Query: 218 -FGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCV 276
F L P + +D+ ++ +D+ T + +A +GH V
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Query: 277 RFSPGGESYASGSEDGTIRIWQT 299
F P SGSEDGT++IW +
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNS 257
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 154 LHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE-TKSPVTSAE-VSQDGRYITTADGSTVK 211
H + + T G V LW+ + V++++ T++PV + + +++ I +D ++
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 212 FWDANHFGLVKSYNM-PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACN-KGH 269
++ N V + P I S ++ P ++G +D+ V+ +++ + +GH
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGH 139
Query: 270 HGPVHCVRFSPGGES-YASGSEDGTIRIWQTGPVTNDDTET 309
V CV F+P S +ASG D T+++W G T + T T
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
G R V + Y P+ PD ++I+AS D + + + +T + T EGH V
Sbjct: 182 GQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 74 LRAASASADFSAKVWDALTGDV 95
S S D + K+W++ T V
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKV 262
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 12/203 (5%)
Query: 33 FLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALT 92
++I S D + N TG+ + FE H + S + S S D + K+W+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93 GDVL-HSFE-HKHIVRACSFS-EDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVR 149
L +FE H+H V +F+ +D +G +++ ++++ L + + G R
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQER 185
Query: 150 TVAWLH----SDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGR--YIT 203
V ++ D+ + T +D +++WD ++ V TLE S V I+
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 204 TADGSTVKFWDANHFGLVKSYNM 226
++ T+K W+++ + + K+ N+
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNV 268
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 11/203 (5%)
Query: 105 VRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164
VRA F + ++ G + +R+F+ N + + + P +R++A +H + + +
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFEAHPDYIRSIA-VHPTKPYVLSG 115
Query: 165 TDMGGVRLWDVRSG-EIVQTLETKSPVTSAEVSQDGRYITTADG---STVKFWDANH--- 217
+D V+LW+ + + QT E T A G TVK W
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175
Query: 218 -FGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCV 276
F L P + +D+ ++ +D+ T + +A +GH V
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Query: 277 RFSPGGESYASGSEDGTIRIWQT 299
F P SGSEDGT++IW +
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNS 257
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 154 LHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE-TKSPVTSAE-VSQDGRYITTADGSTVK 211
H + + T G V LW+ + V++++ T++PV + + +++ I +D ++
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 212 FWDANHFGLVKSYNM-PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACN-KGH 269
++ N V + P I S ++ P ++G +D+ V+ +++ + +GH
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGH 139
Query: 270 HGPVHCVRFSPGGES-YASGSEDGTIRIWQTGPVTNDDTET 309
V CV F+P S +ASG D T+++W G T + T T
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
G R V + Y P+ PD ++I+AS D + + + +T + T EGH V
Sbjct: 182 GQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 74 LRAASASADFSAKVWDALTGDV 95
S S D + K+W++ T V
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKV 262
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 93/203 (45%), Gaps = 12/203 (5%)
Query: 33 FLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALT 92
++I S D + N TG+ + FE H + S + S S D + K+W+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93 GDVL-HSFE-HKHIVRACSFS-EDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVR 149
L +FE H+H V +F+ +D +G +++ ++++ L + + P + G R
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPN-FTLTTGQER 185
Query: 150 TVAWLHS----DQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGR--YIT 203
V ++ D+ + T +D +++WD ++ V TLE S V I+
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 204 TADGSTVKFWDANHFGLVKSYNM 226
++ T+K W+++ + + K+ N+
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNV 268
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 13/204 (6%)
Query: 105 VRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164
VRA F + ++ G + +R+F+ N + + + P +R++A + +LS
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-DFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 165 TDMGGVRLWDVRSG-EIVQTLETKSPVTSAEVSQDGRYITTADG---STVKFWDANH--- 217
D+ V+LW+ + + QT E T A G TVK W
Sbjct: 117 DDLT-VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175
Query: 218 -FGLVKSYNMPCT-IESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHC 275
F L ++ L K + +D+ ++ +D+ T + +A +GH V
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDK--PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 276 VRFSPGGESYASGSEDGTIRIWQT 299
F P SGSEDGT++IW +
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNS 257
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 154 LHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE-TKSPVTSAE-VSQDGRYITTADGSTVK 211
H + + T G V LW+ + V++++ T++PV + + +++ I +D ++
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 212 FWDANHFGLVKSYNM-PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACN-KGH 269
++ N V + P I S ++ P ++G +D+ V+ +++ + +GH
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGH 139
Query: 270 HGPVHCVRFSPGGES-YASGSEDGTIRIWQTGPVTNDDTET 309
V CV F+P S +ASG D T+++W G T + T T
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
G R V + Y P+ PD ++I+AS D + + + +T + T EGH V
Sbjct: 182 GQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 74 LRAASASADFSAKVWDALTGDV 95
S S D + K+W++ T V
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKV 262
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 93/203 (45%), Gaps = 12/203 (5%)
Query: 33 FLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALT 92
++I S D + N TG+ + FE H + S + S S D + K+W+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93 GDVL-HSFE-HKHIVRACSFS-EDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVR 149
L +FE H+H V +F+ +D +G +++ ++++ L + + P + G R
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPN-FTLTTGQER 185
Query: 150 TVAWLHS----DQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGR--YIT 203
V ++ D+ + T +D +++WD ++ V TLE S V I+
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 204 TADGSTVKFWDANHFGLVKSYNM 226
++ T+K W+++ + + K+ N+
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNV 268
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 13/204 (6%)
Query: 105 VRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164
VRA F + ++ G + +R+F+ N + + + P +R++A + +LS
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-DFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 165 TDMGGVRLWDVRSG-EIVQTLETKSPVTSAEVSQDGRYITTADG---STVKFWDANH--- 217
D+ V+LW+ + + QT E T A G TVK W
Sbjct: 117 DDLT-VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175
Query: 218 -FGLVKSYNMPCT-IESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHC 275
F L ++ L K + +D+ ++ +D+ T + +A +GH V
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDK--PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 276 VRFSPGGESYASGSEDGTIRIWQT 299
F P SGSEDGT++IW +
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNS 257
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 154 LHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE-TKSPVTSAE-VSQDGRYITTADGSTVK 211
H + + T G V +W+ + V++++ T++PV + + +++ I +D ++
Sbjct: 21 FHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 212 FWDANHFGLVKSYNM-PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACN-KGH 269
++ N V + P I S ++ P ++G +D+ V+ +++ + +GH
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGH 139
Query: 270 HGPVHCVRFSPGGES-YASGSEDGTIRIWQTGPVTNDDTET 309
V CV F+P S +ASG D T+++W G T + T T
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA 73
G R V + Y P+ PD ++I+AS D + + + +T + T EGH V
Sbjct: 182 GQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 74 LRAASASADFSAKVWDALTGDV 95
S S D + K+W++ T V
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKV 262
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 30/261 (11%)
Query: 78 SASADFSAKVWDA---LTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRP 134
S+S D + KVWD T DV + E + S L+ G +++ DL +
Sbjct: 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL-KS 175
Query: 135 DAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR------------SGEIVQ 182
+ + + V+W IL+T + V+LWDVR +G+ Q
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235
Query: 183 TLETKSPVTSAEV-----SQDGRYI-TTADGSTVKFWDA-NHFGLVKSYNMPCTIESASL 235
+E+ + + +V + DG ++ T + ++ W++ N + +Y C L
Sbjct: 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL 295
Query: 236 EPKYG----NKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSED 291
+ ++FV + + ++G +I KGH+ V C F + SGS D
Sbjct: 296 KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355
Query: 292 GTIRIWQTG---PVTNDDTET 309
I W PV +DD T
Sbjct: 356 CNILAWVPSLYEPVPDDDETT 376
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 13/147 (8%)
Query: 199 GRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFV--AGGEDMWVRFFD 256
G + +++ T+K WD N +N T+ S + P + G V+ D
Sbjct: 113 GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172
Query: 257 FHTGNEIACNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQTGPVTNDDTETLTANGT 315
+G+ +GH + V +SP + A+ S D +++W + A+G
Sbjct: 173 LKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW----------DVRRASGC 222
Query: 316 IGKVKVTADEVSRKIEGFHIADEGKMK 342
+ + + S+ +E + A GK+
Sbjct: 223 LITLDQHNGKKSQAVESANTAHNGKVN 249
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 230 IESASLEPKYGNKFVAGGEDMWVRFFDFHTGN-------EIACNKG------HHGPVHCV 276
I + +EP G ++GG D + +D + + C+ G H V V
Sbjct: 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV 105
Query: 277 RFSPGGES-YASGSEDGTIRIWQTGPVTNDD 306
++ P + S S D T+++W T + D
Sbjct: 106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD 136
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 111/299 (37%), Gaps = 69/299 (23%)
Query: 33 FLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALT 92
++I+ + D + + ++ GH G VW+ + S S D + +VWD
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKK 192
Query: 93 GDVLHSFE-HKHIVRACSFSE--DTHLLLTGGMEKILRIFDLNR---------------- 133
G H FE H VR E + ++TG + L ++ L +
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 134 ---PDAPPREVDRSPG---SVRTVA-----------------WL------------HSDQ 158
P+ P V G SVRTV+ W H+D+
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 312
Query: 159 TILSTCTDM-----------GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADG 207
I ST D +R+WD+ +GE++ TL+ + + D ++ A
Sbjct: 313 -IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 208 STVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACN 266
+++ WDAN + SY+ + + + N V+G E+ + ++ +G + N
Sbjct: 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLVHAN 428
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 197 QDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESA---SLEPKYGNKFVAGGEDMWVR 253
+D IT AD ++ +D+ + K + + + +L+ +G V+G D VR
Sbjct: 131 EDNYVITGADDKMIRVYDS----INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 186
Query: 254 FFDFHTGNEIACNKGHHGPVHCVRF--SPGGESYASGSEDGTIRIWQ 298
+D G +GH+ V C+ + +GS D T+ +W+
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 31/223 (13%)
Query: 101 HKHIVRACSFSEDTHLLLTGGMEKILRIFD-LNRPDAPPREVDRSPGSVRTVAWLHSDQT 159
H V C ED +++ TG +K++R++D +N+ ++ G V + + H
Sbjct: 120 HMTSVITCLQFEDNYVI-TGADDKMIRVYDSINKKFLL--QLSGHDGGVWALKYAHGG-I 175
Query: 160 ILSTCTDMGGVRLWDVRSGEIVQTLE-TKSPVTSAEVSQ--DGRYITT-ADGSTVKFWDA 215
++S TD VR+WD++ G E S V ++ + + +YI T + +T+ W
Sbjct: 176 LVSGSTDRT-VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 216 NHFGLV----KSYNMPCTIESASLEPKY-----------------GNKFVAGGEDMWVRF 254
V + ++ P + P + GN V+G D +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 255 FDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
+D + GH ++ + + S S D TIRIW
Sbjct: 295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 110/299 (36%), Gaps = 69/299 (23%)
Query: 33 FLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALT 92
++I+ + D + + ++ GH G VW+ + S S D + +VWD
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKK 192
Query: 93 GDVLHSFE-HKHIVRACSFSE--DTHLLLTGGMEKILRIFDLNR---------------- 133
G H FE H VR E + ++TG + L ++ L +
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 134 ---PDAPPREVDRSPG---SVRTVA-----------------WL------------HSDQ 158
P+ P V G SVRTV+ W H+D+
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDR 312
Query: 159 TILSTCTDM-----------GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADG 207
I ST D +R+WD+ +GE+ TL+ + + D ++ A
Sbjct: 313 -IYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 208 STVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACN 266
+++ WDAN + SY+ + + + N V+G E+ + ++ +G + N
Sbjct: 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLVHAN 428
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 31/223 (13%)
Query: 101 HKHIVRACSFSEDTHLLLTGGMEKILRIFD-LNRPDAPPREVDRSPGSVRTVAWLHSDQT 159
H V C ED +++ TG +K +R++D +N+ ++ G V + + H
Sbjct: 120 HXTSVITCLQFEDNYVI-TGADDKXIRVYDSINKKFLL--QLSGHDGGVWALKYAHGG-I 175
Query: 160 ILSTCTDMGGVRLWDVRSGEIVQTLE-TKSPVTSAEVSQ--DGRYITT-ADGSTVKFWDA 215
++S TD VR+WD++ G E S V ++ + + +YI T + +T+ W
Sbjct: 176 LVSGSTDRT-VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 216 NHFGLV----KSYNMPCTIESASLEPKY-----------------GNKFVAGGEDMWVRF 254
V + ++ P + P + GN V+G D +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 255 FDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
+D + GH ++ + + S S D TIRIW
Sbjct: 295 WDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 44/178 (24%)
Query: 128 IFDLNRPDAPPREVDRSPG-----SVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQ 182
I+ P+ P E + G V VAW+ S++ IL +D G V LW++
Sbjct: 72 IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWV-SEKGIL-VASDSGAVELWEI------- 122
Query: 183 TLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNK 242
LE +S + + KF H +VK+ ++ G +
Sbjct: 123 -LEKESLLVN------------------KFAKYEHDDIVKTLSVFSD----------GTQ 153
Query: 243 FVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQT 299
V+GG+D V+ +D + H V+CV PG ++ + S EDG I +W T
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 79 ASADFSAKVWDALTGDVL-----HSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNR 133
AS + ++W+ L + L +EH IV+ S D ++GG + ++++DL++
Sbjct: 111 ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170
Query: 134 PDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR 176
A + + V VA TI +C + G + LWD R
Sbjct: 171 K-AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 60 HKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE----HKHIVRACSFSEDTH 115
H V + + ++ +A S DFS KVWD VL S+ + V AC +DT
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP-GKDTI 196
Query: 116 LLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTD-MGGVRLWD 174
L G +IL ++D +P R + ++ T H ++ C D G V L +
Sbjct: 197 FLSCGEDGRIL-LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVN 255
Query: 175 VRSGEIVQT 183
+++ + QT
Sbjct: 256 IKNPDSAQT 264
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 77 ASASADFSAKVWDALT----GDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132
A+AS D + K+WD L+S H+H V A FS D LLT + +R++ +
Sbjct: 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326
Query: 133 RPDAP 137
+ D P
Sbjct: 327 QWDCP 331
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 77 ASASADFSAKVWDALT----GDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132
A+AS D + K+WD L+S H+H V A FS D LLT + +R++ +
Sbjct: 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326
Query: 133 RPDAP 137
+ D P
Sbjct: 327 QWDCP 331
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 77 ASASADFSAKVWDALT----GDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132
A+AS D + K+WD L+S H+H V A FS D LLT + +R++ +
Sbjct: 268 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 327
Query: 133 RPDAP 137
+ D P
Sbjct: 328 QWDCP 332
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 29 PDGFFLISASKDSSPMLRNGETGDWIGTFE-------GHKGAVWSCCLDTNALRAASASA 81
PDG S D + +L NG G G FE H G+V+ + + ASASA
Sbjct: 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259
Query: 82 DFSAKVWDALT 92
D + K+W+ T
Sbjct: 260 DKTIKIWNVAT 270
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 86/222 (38%), Gaps = 16/222 (7%)
Query: 100 EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPRE-VDRSPGSVRTVAWLHSDQ 158
EH H S + +G + +RI+D + + + G V+ ++W +
Sbjct: 57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 116
Query: 159 TILSTCTD---MGGVRLWDV--RSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFW 213
I + G V L+D +G + + V + S+ R I+ +D +TV +
Sbjct: 117 RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV-DFKPSRPFRIISGSDDNTVAIF 175
Query: 214 DANHFGLVKSYNMPCT-IESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIAC------- 265
+ F ++ + S P G+ F + G D + ++ G +
Sbjct: 176 EGPPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234
Query: 266 NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTNDDT 307
N H G V + +SP G AS S D TI+IW + + T
Sbjct: 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 101 HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVD--RSPGSVRTVAWLHSDQ 158
H V S+S D L TG ++ + ++++N+P P + + SV +V WL+ +
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ET 593
Query: 159 TILSTCTDMGGVRLWDV 175
TI+S D ++ W+V
Sbjct: 594 TIVSAGQD-SNIKFWNV 609
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 22/186 (11%)
Query: 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCC 68
V HS+ V + + P L S+S D + + DW + GH+G VWS
Sbjct: 148 VLQEHSQDVKHVIWHPSEA---LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204
Query: 69 LDTN--ALRAASASADFSAKVWDALTGDVLHSFE----------HKHIVRACSFSEDTHL 116
D R S S D + +VW + D E HK V ++ + L
Sbjct: 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-L 263
Query: 117 LLTGGMEKILRIF---DLNRPDAPPREVDRSPGSVRTVAWLHSD-QTILSTCTDMGGVRL 172
+ + G + +L ++ D R + + V WL + +TIL+T D G V
Sbjct: 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323
Query: 173 WDVRSG 178
W +
Sbjct: 324 WSLEKA 329
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 99/278 (35%), Gaps = 48/278 (17%)
Query: 54 IGTFEGHKGAVWSCCLDTNALRAASASADF---SAKVWDALTGDVLHSFEHKHIVRACSF 110
I + + +K +WS L S S K D DVL HK +R+ ++
Sbjct: 7 IKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW 66
Query: 111 SEDTHLLLTGGMEKILRIFDLNRPDAPPREVDR------SPGSVRTVAWLHSDQTILSTC 164
T LL G + + I+ E+D V+ VAW +D L+TC
Sbjct: 67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW-SNDGYYLATC 125
Query: 165 TDMGGVRLWDV-RSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKS 223
+ V +W+ SGE E + E SQD +++ W + L+ S
Sbjct: 126 SRDKSVWIWETDESGE-----EYECISVLQEHSQDVKHV---------IWHPSE-ALLAS 170
Query: 224 YNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRF--SPG 281
+ T+ +W + D +A GH G V F + G
Sbjct: 171 SSYDDTVR------------------IWKDYDD--DWECVAVLNGHEGTVWSSDFDKTEG 210
Query: 282 GESYASGSEDGTIRIWQTGPVTNDDTETLTANGTIGKV 319
SGS+D T+R+W+ DD + + V
Sbjct: 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDV 248
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 22 LFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTF----EGHKGAVWSCCLDTNALRAA 77
L +SP T G FLI+ S + +R E D T + H G V C + +
Sbjct: 45 LSFSPPTLPGNFLIAGSWAND--VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102
Query: 78 SASADFSAKVWDALTGDVLHSFEHK------HIVRACSFSEDTHLLLTGGMEKILRIFD 130
+AS D +AK+WD + + +H H ++A ++S ++TG +K L+ +D
Sbjct: 103 TASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLKFWD 157
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 109 SFSEDT---HLLLTGGMEKILRIFDL-NRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164
SFS T + L+ G +R +++ + P+ G V V W + +
Sbjct: 46 SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105
Query: 165 TDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGS---TVKFWDANHFGLV 221
D ++WD+ S + +Q + +PV + + Y GS T+KFWD +
Sbjct: 106 CDKTA-KMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164
Query: 222 KSYNMP 227
+P
Sbjct: 165 MVLQLP 170
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 69 LDTNALRAASASADFSAKVWDAL-TGDVLHSFEHKH---IVRACSFSEDTHLLLTGGMEK 124
L N L A S + D + W+ +G + + H ++ C +S+D + T +K
Sbjct: 52 LPGNFLIAGSWAND--VRCWEVQDSGQTIPKAQQMHTGPVLDVC-WSDDGSKVFTASCDK 108
Query: 125 ILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG----VRLWDVRSGEI 180
+++DL+ A ++ + V+T+ W+ + +C G ++ WD RS
Sbjct: 109 TAKMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNY---SCVMTGSWDKTLKFWDTRSSNP 163
Query: 181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKF 212
+ L+ A+V + TA+ + +
Sbjct: 164 MMVLQLPERCYCADVIYPMAVVATAERGLIVY 195
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 54 IGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG-DVLHSFEHKHIVRACSFSE 112
IGT +GH V ++ L+ AS D ++WDA + H V+A ++
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 113 -DTHLLLTGG--MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILST-CTDMG 168
++LL TGG M+K + ++ A VD + V ++ W + I+ST
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNA-ATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 169 GVRLWDVRSGEIVQTLET---KSPVTSAEVSQDGRYITT-ADGSTVKFW 213
+ +W S + + ++ + V + +S DGR ++T A +KFW
Sbjct: 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 48/243 (19%)
Query: 89 DALTGDVLHSFEHKHIVRACSFSEDTHLL-LTGGMEKILRIFDL----NRPDAP------ 137
++++ DV + + + AC F +T +L + + DL NRP P
Sbjct: 16 NSISSDVPFDYS-ESVAEACGFDLNTRVLAFKLDAPEAKKPVDLRTQHNRPQRPVVTPAK 74
Query: 138 ------PREVDRSPGSV-----RTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET 186
P V +PG + + W S+ +++ + V +W+ SG + ET
Sbjct: 75 RRFNTTPERVLDAPGIIDDYYLNLLDW--SNLNVVAVALERN-VYVWNADSGSVSALAET 131
Query: 187 --KSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASL---EPKYG- 240
+ V S + S DG +++ G+ GLV Y++ + ++ + + G
Sbjct: 132 DESTYVASVKWSHDGSFLSVGLGN----------GLVDIYDVESQTKLRTMAGHQARVGC 181
Query: 241 ---NKFV--AGGEDMWVRFFDFHTGN-EIACNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
N+ V +G + D N +I +GH V + + G ASG D +
Sbjct: 182 LSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241
Query: 295 RIW 297
+IW
Sbjct: 242 QIW 244
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 14/193 (7%)
Query: 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAV----WSC 67
GHS V L + DG L S D+ + + + T H AV W C
Sbjct: 213 LQGHSSEVCGLAWRS---DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW-C 268
Query: 68 CLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLT--GGMEKI 125
+N L + D W+A TG +++ + V + +S + +++ G +
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN 328
Query: 126 LRIFDLNRPDAPPREVDRSPGSVRTV-AWLHSDQTILSTCTDMGGVRLWDVRSGEIVQ-- 182
L I+ + ++VD R + + L D ILST ++ W V G+ V+
Sbjct: 329 LSIWSYSS-SGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387
Query: 183 TLETKSPVTSAEV 195
TK+P +S +
Sbjct: 388 IPITKTPSSSITI 400
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 175 VRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESAS 234
+R G + + V +A++ Q R+I +K D+N F L + + E
Sbjct: 84 IRDGSKMLKRADYTAVDTAKL-QMRRFILGTTEGDIKVLDSN-FNLQREIDQAHVSEITK 141
Query: 235 LE--PKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDG 292
L+ P G ++ +DM ++ + G+ GH V + G + S S DG
Sbjct: 142 LKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG 200
Query: 293 TIRIWQTG 300
TIR+W+ G
Sbjct: 201 TIRLWECG 208
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 29 PDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVW 88
P G LIS+S+D + + + G T GH+ V + SAS D + ++W
Sbjct: 146 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Query: 89 DALTGDVLHSFEHK 102
+ TG +H+F K
Sbjct: 206 ECGTGTTIHTFNRK 219
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 38/205 (18%)
Query: 117 LLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR 176
L++ + L+I+ + + + PR + +V +A + + +LS D G +RLW+
Sbjct: 151 LISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD-GTIRLWECG 208
Query: 177 SGEIVQTLETK-------------------------SPVTSAEVSQDGRYITTADGSTVK 211
+G + T K S + E G+Y+ S V
Sbjct: 209 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV- 267
Query: 212 FWDANHFGLVKSYNMP----CTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGN----EI 263
N F ++ +P C+ S +++ N AG E+ + +D + E
Sbjct: 268 ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF 327
Query: 264 ACNKGHHGPVHCVRFSPGGESYASG 288
N+G P++ V F+ G +SG
Sbjct: 328 LINEG--TPINNVYFAAGALFVSSG 350
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 175 VRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESAS 234
+R G + + V +A++ Q R+I +K D+N F L + + E
Sbjct: 87 IRDGSKMLKRADYTAVDTAKL-QMRRFILGTTEGDIKVLDSN-FNLQREIDQAHVSEITK 144
Query: 235 LE--PKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDG 292
L+ P G ++ +DM ++ + G+ GH V + G + S S DG
Sbjct: 145 LKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG 203
Query: 293 TIRIWQTG 300
TIR+W+ G
Sbjct: 204 TIRLWECG 211
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 29 PDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVW 88
P G LIS+S+D + + + G T GH+ V + SAS D + ++W
Sbjct: 149 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Query: 89 DALTGDVLHSFEHK 102
+ TG +H+F K
Sbjct: 209 ECGTGTTIHTFNRK 222
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 38/205 (18%)
Query: 117 LLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR 176
L++ + L+I+ + + + PR + +V +A + + +LS D G +RLW+
Sbjct: 154 LISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD-GTIRLWECG 211
Query: 177 SGEIVQTLETK-------------------------SPVTSAEVSQDGRYITTADGSTVK 211
+G + T K S + E G+Y+ S V
Sbjct: 212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV- 270
Query: 212 FWDANHFGLVKSYNMP----CTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGN----EI 263
N F ++ +P C+ S +++ N AG E+ + +D + E
Sbjct: 271 ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF 330
Query: 264 ACNKGHHGPVHCVRFSPGGESYASG 288
N+G P++ V F+ G +SG
Sbjct: 331 LINEG--TPINNVYFAAGALFVSSG 353
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 240 GNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQ 298
G + V+G +D+ ++ +D ++ + H V CV SP +S + S SED I +W
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Query: 299 T 299
T
Sbjct: 199 T 199
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 108 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 71 TNALRAASASADFSAKVW 88
+ S D S K+W
Sbjct: 166 LLGEKIMSCGMDHSLKLW 183
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 113 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 71 TNALRAASASADFSAKVW 88
+ S D S K+W
Sbjct: 171 LLGEKIMSCGMDHSLKLW 188
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 112 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 71 TNALRAASASADFSAKVW 88
+ S D S K+W
Sbjct: 170 LLGEKIMSCGMDHSLKLW 187
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 112 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 71 TNALRAASASADFSAKVW 88
+ S D S K+W
Sbjct: 170 LLGEKIMSCGMDHSLKLW 187
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 149 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 71 TNALRAASASADFSAKVW 88
+ S D S K+W
Sbjct: 207 LLGEKIMSCGMDHSLKLW 224
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 76/183 (41%), Gaps = 33/183 (18%)
Query: 146 GSVRTVAWLHSD-QTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQ------- 197
G V V W H TIL++C+ G V +W +G Q V SA V+
Sbjct: 54 GPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQI--AVHAVHSASVNSVQWAPHE 111
Query: 198 --DGRYITTADG--STVKF----------WDANHFGLVKSYNMPCTIESASLE--PKYGN 241
+ ++DG S V+F DA+ G+ + P TIE K
Sbjct: 112 YGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 171
Query: 242 KFVAGGEDMWVRFFDFHTGNEI----ACNKGHHGPVHCVRFSPGG--ESY-ASGSEDGTI 294
KFV GG D V+ + +++ + + +GH V V +SP SY AS S+D T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTC 231
Query: 295 RIW 297
IW
Sbjct: 232 IIW 234
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 32/184 (17%)
Query: 127 RIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET 186
RI PDA G++R LH I T + +WD + + ++
Sbjct: 47 RIMSQEMPDA---------GTIRM---LHRTNYIAFVSTKKELLHIWDDVKKQDITRVKL 94
Query: 187 KSPVTSAEVSQDGRYITTADGSTVKFWDANHFG-----LVKSYNMPCTIESASLEPKYGN 241
+ V +S++ +I + G + + FG + + E A+ Y N
Sbjct: 95 DAAVKDLFLSRE--FIVVSQGDVISIF---KFGNPWNKITEDIKFGGVCEFANGLLVYSN 149
Query: 242 KFVAGGEDMWVRFFDFHTGNEIACNKG-----HHGPVHCVRFSPGGESYASGSEDGT-IR 295
+F G + T E KG H PV VR + G+ A+ S+DGT IR
Sbjct: 150 EFNLGQ----IHVTRLQTDAEQVVGKGVLVKAHANPVKMVRLNRKGDMVATCSQDGTLIR 205
Query: 296 IWQT 299
++QT
Sbjct: 206 VFQT 209
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 74/181 (40%), Gaps = 29/181 (16%)
Query: 146 GSVRTVAWLHSD-QTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRY--- 201
G V V W H TIL++C+ G V +W +G Q S Q +
Sbjct: 54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113
Query: 202 ----ITTADG--STVKF----------WDANHFGLVKSYNMPCTIESASLE--PKYGNKF 243
+ ++DG S V+F DA+ G+ + P TIE K KF
Sbjct: 114 PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173
Query: 244 VAGGEDMWVRFFDFHTGNEI----ACNKGHHGPVHCVRFSPGG--ESY-ASGSEDGTIRI 296
V GG D V+ + +++ + + +GH V V +SP SY AS S+D T I
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233
Query: 297 W 297
W
Sbjct: 234 W 234
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 74/181 (40%), Gaps = 29/181 (16%)
Query: 146 GSVRTVAWLHSD-QTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRY--- 201
G V V W H TIL++C+ G V +W +G Q S Q +
Sbjct: 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 115
Query: 202 ----ITTADG--STVKF----------WDANHFGLVKSYNMPCTIESASLE--PKYGNKF 243
+ ++DG S V+F DA+ G+ + P TIE K KF
Sbjct: 116 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 175
Query: 244 VAGGEDMWVRFFDFHTGNEI----ACNKGHHGPVHCVRFSPGG--ESY-ASGSEDGTIRI 296
V GG D V+ + +++ + + +GH V V +SP SY AS S+D T I
Sbjct: 176 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 235
Query: 297 W 297
W
Sbjct: 236 W 236
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 74/181 (40%), Gaps = 29/181 (16%)
Query: 146 GSVRTVAWLHSD-QTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRY--- 201
G V V W H TIL++C+ G V +W +G Q S Q +
Sbjct: 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113
Query: 202 ----ITTADG--STVKF----------WDANHFGLVKSYNMPCTIESASLE--PKYGNKF 243
+ ++DG S V+F DA+ G+ + P TIE K KF
Sbjct: 114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173
Query: 244 VAGGEDMWVRFFDFHTGNEI----ACNKGHHGPVHCVRFSPGG--ESY-ASGSEDGTIRI 296
V GG D V+ + +++ + + +GH V V +SP SY AS S+D T I
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233
Query: 297 W 297
W
Sbjct: 234 W 234
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 79/191 (41%), Gaps = 37/191 (19%)
Query: 146 GSVRTVAWLHSD-QTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDG----- 199
G V V W H TIL++C+ G V +W +G Q V SA V+
Sbjct: 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI--AVHAVHSASVNSVQWAPHE 111
Query: 200 ----RYITTADG--STVKF----------WDANHFGLVKSYNMPCTIESASLE--PKYGN 241
+ ++DG S V+F DA+ G+ + P TIE K
Sbjct: 112 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 171
Query: 242 KFVAGGEDMWVRFFDFHTGNEI----ACNKGHHGPVHCVRFSPGG--ESY-ASGSEDGTI 294
KFV GG D V+ + +++ + + +GH V V +SP SY AS S+D T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 295 RIW----QTGP 301
IW + GP
Sbjct: 232 IIWTQDNEQGP 242
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 59/297 (19%), Positives = 117/297 (39%), Gaps = 70/297 (23%)
Query: 34 LISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL-DTNALRAASASADFSAKVWDA-- 90
++ +D+ + + ++G+ +G GH + +C L + +R+ + D S +
Sbjct: 133 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 192
Query: 91 ---LTGDVLHSFEHKH--IVRACSFSEDT-HLLLTGGMEKILRIFDLNRPDAPPR-EVDR 143
D H HK VR FS D+ ++T G ++ + FD + E D+
Sbjct: 193 FKFSASDRTH---HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 249
Query: 144 SP--GSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQ--TLETKSPVTSAEV---- 195
P G + ++WL S + +T +R+WDV + + VQ TL+ K + + +V
Sbjct: 250 EPVQGGIFALSWLDSQK--FATVGADATIRVWDVTTSKCVQKWTLD-KQQLGNQQVGVVA 306
Query: 196 SQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFF 255
+ +GR I+ + T+ F++ H ++K+ +
Sbjct: 307 TGNGRIISLSLDGTLNFYELGHDEVLKTIS------------------------------ 336
Query: 256 DFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTNDDTETLTA 312
GH+ + + +P SGS DG I W + + D + + +
Sbjct: 337 ------------GHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVS 377
>pdb|1QN0|A Chain A, Solution Structure Of Desulfovibrio Gigas Ferrocytochrome
C3, Nmr, 20 Structures
pdb|1QN1|A Chain A, Solution Structure Of Desulfovibrio Gigas Ferricytochrome
C3, Nmr, 15 Structures
Length = 112
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 243 FVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRI 296
F+AGGE F+ T ++ C+ HH PG + YA + DG I
Sbjct: 12 FIAGGEKNLTVVFNHSTHKDVKCDDCHH--------QPGDKQYAGCTTDGCHNI 57
>pdb|1WAD|A Chain A, Cytochrome C3 With 4 Heme Groups And One Calcium Ion
Length = 112
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 243 FVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRI 296
F+AGGE F+ T ++ C+ HH PG + YA + DG I
Sbjct: 12 FIAGGEKNLTVVFNHSTHKDVKCDDCHH--------DPGDKQYAGCTTDGCHNI 57
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 239 YGNKFVAGGEDMWVRFFDFHTGNE--IACNKGHHGPVHCVRFSPG--GESYASGSEDGTI 294
YG + D V+ FD G + IA +GH GPV V ++ G AS S D +
Sbjct: 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 295 RIWQ 298
IW+
Sbjct: 84 IIWR 87
>pdb|1MIO|C Chain C, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
pdb|1MIO|A Chain A, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
Length = 533
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTNDDTETLTANGTIGKVKVTADEVSRK 329
HGP+ C ++ GG + S E+GT + + D E+ G + K+K D +
Sbjct: 73 HGPIGCSFYTWGGRRFKSKPENGTGLNFNEYVFSTDMQESDIVFGGVNKLK---DAIHEA 129
Query: 330 IEGFHIADEG 339
E FH A G
Sbjct: 130 YEMFHPAAIG 139
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 12/142 (8%)
Query: 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD 70
+C HS+ LF P P S S ++ +G ++ T + VW ++
Sbjct: 261 LCDRHSK----LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNME 316
Query: 71 TNALRAASASADFSAKVWDALTGD-VLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIF 129
+ +K+ D + FE C ++ +++TG R+F
Sbjct: 317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFE-------CCWNGSDSVVMTGSYNNFFRMF 369
Query: 130 DLNRPDAPPREVDRSPGSVRTV 151
D N E R RTV
Sbjct: 370 DRNTKRDITLEASRENNKPRTV 391
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 185 ETKSPVTSAEVSQDGRYITTADGSTVKFWDAN 216
E S ++ + S GRY+ T D +VK WD N
Sbjct: 283 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLN 314
>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
Length = 582
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 96 LHSFEHKHIVRACSFSEDTHLLLTGGMEKIL-RIFDLNRP--------DAPPREVDRSPG 146
L S + K ++R + S D L L +EK+ ++ RP + +++D+
Sbjct: 80 LKSTQQKSVLRVGTLSSDDLLTLAADLEKLKSKVTRTERPLSSGVYMGNLSSQQLDQRRA 139
Query: 147 SVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIV 181
+ + + Q S G VR+WDV++ E++
Sbjct: 140 LLNLIGMTNGSQG--SQAGRDGVVRVWDVKNAELL 172
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 21/182 (11%)
Query: 10 LVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPML-------RNGETGDWIGTFEGHKG 62
L GH + L ++P L+SAS D + L + G+ D F GH
Sbjct: 171 LRLRGHQKEGYGLSWNPNL--SGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 228
Query: 63 AV----WSCCLDTNALRAASASADFSAKVWDALTGDVL---HSFE-HKHIVRACSFSEDT 114
V W ++ S + D +WD + + HS + H V SF+ +
Sbjct: 229 VVEDVSWHLLHES---LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS 285
Query: 115 HLLL-TGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173
+L TG +K + ++DL + + V W ++TIL++ + +W
Sbjct: 286 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Query: 174 DV 175
D+
Sbjct: 346 DL 347
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 101 HKHIVRACSF-SEDTHLLLTGGMEKILRIFDLNR-PDAPPREVDRSPGS-------VRTV 151
H V+ F ++ ++L +GG + I+D+N+ ++P +PG V ++
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171
Query: 152 AWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSP 189
AW S + ++ +WD+++ + V L SP
Sbjct: 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP 209
>pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of Pyrococcus
Horikoshii In Complex With Zinc
pdb|1ILW|A Chain A, Crystal Structure Of PyrazinamidaseNICOTINAMIDASE OF
Pyrococcus Horikoshii
Length = 180
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 238 KYGNKFVAGGEDMWVRFFDFHTGNEIACN-KGHHGPVHCVRFSPGGESYASGSEDGTIRI 296
+Y KF G + V D+H N I+ +G P HCV+ +PG E ED I
Sbjct: 35 EYIRKFKEKGA-LIVATRDWHPENHISFRERGGPWPRHCVQNTPGAEFVVDLPEDAVIIS 93
Query: 297 WQTGP 301
T P
Sbjct: 94 KATEP 98
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 21/182 (11%)
Query: 10 LVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPML-------RNGETGDWIGTFEGHKG 62
L GH + L ++P +L+SAS D + L + D F GH
Sbjct: 179 LRLRGHQKEGYGLSWNPNL--NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 236
Query: 63 AV----WSCCLDTNALRAASASADFSAKVWDALTGDVL---HSFE-HKHIVRACSFSEDT 114
V W ++ S + D +WD + H+ + H V SF+ +
Sbjct: 237 VVEDVAWHLLHES---LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 293
Query: 115 HLLL-TGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173
+L TG +K + ++DL + + V W ++TIL++ + +W
Sbjct: 294 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Query: 174 DV 175
D+
Sbjct: 354 DL 355
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 21/182 (11%)
Query: 10 LVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPML-------RNGETGDWIGTFEGHKG 62
L GH + L ++P +L+SAS D + L + D F GH
Sbjct: 175 LRLRGHQKEGYGLSWNPNL--NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 232
Query: 63 AV----WSCCLDTNALRAASASADFSAKVWDALTGDVL---HSFE-HKHIVRACSFSEDT 114
V W ++ S + D +WD + H+ + H V SF+ +
Sbjct: 233 VVEDVAWHLLHES---LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289
Query: 115 HLLL-TGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173
+L TG +K + ++DL + + V W ++TIL++ + +W
Sbjct: 290 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Query: 174 DV 175
D+
Sbjct: 350 DL 351
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 21/182 (11%)
Query: 10 LVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPML-------RNGETGDWIGTFEGHKG 62
L GH + L ++P +L+SAS D + L + D F GH
Sbjct: 177 LRLRGHQKEGYGLSWNPNL--NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 234
Query: 63 AV----WSCCLDTNALRAASASADFSAKVWDALTGDVL---HSFE-HKHIVRACSFSEDT 114
V W ++ S + D +WD + H+ + H V SF+ +
Sbjct: 235 VVEDVAWHLLHES---LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 291
Query: 115 HLLL-TGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173
+L TG +K + ++DL + + V W ++TIL++ + +W
Sbjct: 292 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Query: 174 DV 175
D+
Sbjct: 352 DL 353
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 115 HLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWD 174
H++ TGG + +L I+D+ + P + + V + S+ L TC++ G + WD
Sbjct: 250 HVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Query: 175 VRSGEIVQTLETKSPVTSAEVSQDGRYIT 203
T P S+ Q GR T
Sbjct: 310 A---------STDVPEKSSLFHQGGRSST 329
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 268 GHHGPVHCVRFSPGGES-YASGSEDGTIRIWQT---GPVTNDDTETLTANGTIGKVKVTA 323
GH PV + + P ++ ASGSED T+ +W+ G V +T G +V + A
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 268 GHHGPVHCVRFSPGGES-YASGSEDGTIRIWQT---GPVTNDDTETLTANGTIGKVKVTA 323
GH PV + + P ++ ASGSED T+ +W+ G V +T G +V + A
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,004,441
Number of Sequences: 62578
Number of extensions: 532079
Number of successful extensions: 2166
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 343
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)