Query 018860
Match_columns 349
No_of_seqs 232 out of 2402
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:38:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0278 Serine/threonine kinas 100.0 3.7E-61 8E-66 381.0 21.3 329 6-342 4-333 (334)
2 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-49 7.3E-54 333.6 25.0 281 13-298 172-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 4E-49 8.7E-54 329.4 24.5 283 12-301 111-440 (480)
4 KOG0271 Notchless-like WD40 re 100.0 2.2E-46 4.7E-51 313.1 25.9 284 9-298 150-479 (480)
5 KOG0286 G-protein beta subunit 100.0 5.2E-45 1.1E-49 295.2 32.4 286 7-298 46-343 (343)
6 KOG0279 G protein beta subunit 100.0 1.6E-43 3.5E-48 284.8 31.1 291 5-300 4-313 (315)
7 KOG0293 WD40 repeat-containing 100.0 8.7E-41 1.9E-45 282.0 24.7 287 11-302 219-515 (519)
8 KOG0643 Translation initiation 100.0 6.4E-40 1.4E-44 262.6 25.0 288 9-300 3-317 (327)
9 KOG0315 G-protein beta subunit 100.0 8E-39 1.7E-43 253.9 30.6 268 31-303 10-291 (311)
10 KOG0284 Polyadenylation factor 100.0 4.4E-41 9.6E-46 283.4 18.5 279 17-300 97-380 (464)
11 KOG0272 U4/U6 small nuclear ri 100.0 8E-41 1.7E-45 283.0 17.9 246 7-256 208-458 (459)
12 KOG0265 U5 snRNP-specific prot 100.0 9.5E-39 2.1E-43 259.7 27.2 283 7-296 37-334 (338)
13 KOG0295 WD40 repeat-containing 100.0 1.7E-39 3.6E-44 270.3 22.9 281 12-298 104-404 (406)
14 KOG0282 mRNA splicing factor [ 100.0 4.3E-40 9.4E-45 282.9 19.5 283 11-298 209-503 (503)
15 KOG0279 G protein beta subunit 100.0 2E-38 4.4E-43 255.4 27.7 241 11-258 58-313 (315)
16 KOG0285 Pleiotropic regulator 100.0 1.5E-38 3.3E-43 264.1 26.3 283 11-300 146-439 (460)
17 KOG0296 Angio-associated migra 100.0 1.2E-37 2.6E-42 259.4 30.8 287 7-300 55-398 (399)
18 KOG0316 Conserved WD40 repeat- 100.0 7.4E-38 1.6E-42 246.6 26.7 279 10-297 11-296 (307)
19 cd00200 WD40 WD40 domain, foun 100.0 8.6E-37 1.9E-41 264.8 36.1 282 11-298 4-289 (289)
20 KOG0266 WD40 repeat-containing 100.0 3.7E-37 8.1E-42 284.1 32.9 280 15-300 158-454 (456)
21 KOG0273 Beta-transducin family 100.0 2.1E-37 4.5E-42 265.5 27.4 306 10-323 173-503 (524)
22 KOG0645 WD40 repeat protein [G 100.0 1.1E-35 2.3E-40 238.8 30.8 285 6-299 4-310 (312)
23 KOG0291 WD40-repeat-containing 100.0 1.9E-35 4E-40 266.4 34.0 284 11-299 140-507 (893)
24 KOG0263 Transcription initiati 100.0 9.2E-37 2E-41 276.6 25.0 252 7-304 369-653 (707)
25 KOG0286 G-protein beta subunit 100.0 5.8E-35 1.3E-39 236.9 31.4 266 54-324 48-326 (343)
26 KOG0273 Beta-transducin family 100.0 3.7E-35 8E-40 251.8 30.6 275 17-300 236-523 (524)
27 KOG0281 Beta-TrCP (transducin 100.0 2.2E-37 4.9E-42 256.4 16.4 272 14-304 195-481 (499)
28 KOG0313 Microtubule binding pr 100.0 1.6E-35 3.5E-40 247.8 27.1 279 14-301 103-419 (423)
29 KOG0276 Vesicle coat complex C 100.0 6.8E-36 1.5E-40 264.2 25.8 282 11-296 8-295 (794)
30 KOG0318 WD40 repeat stress pro 100.0 6.2E-34 1.4E-38 247.3 36.3 306 12-325 186-542 (603)
31 KOG0275 Conserved WD40 repeat- 100.0 1.6E-36 3.5E-41 249.4 17.8 278 14-298 211-507 (508)
32 KOG0263 Transcription initiati 100.0 1E-35 2.2E-40 269.8 23.7 209 5-218 440-651 (707)
33 PLN00181 protein SPA1-RELATED; 100.0 1.2E-33 2.5E-38 278.9 39.4 280 13-299 480-792 (793)
34 KOG0319 WD40-repeat-containing 100.0 1.1E-34 2.4E-39 261.0 28.9 282 12-298 319-617 (775)
35 KOG0640 mRNA cleavage stimulat 100.0 2E-35 4.3E-40 241.5 21.1 285 10-299 106-425 (430)
36 KOG0285 Pleiotropic regulator 100.0 5.4E-35 1.2E-39 243.0 23.6 247 52-303 142-392 (460)
37 KOG0291 WD40-repeat-containing 100.0 8.7E-34 1.9E-38 255.7 32.8 283 15-302 306-614 (893)
38 KOG0319 WD40-repeat-containing 100.0 2.9E-34 6.3E-39 258.3 28.1 284 15-302 104-579 (775)
39 KOG0315 G-protein beta subunit 100.0 4.9E-33 1.1E-37 221.0 29.0 257 17-279 41-309 (311)
40 KOG0295 WD40 repeat-containing 100.0 1E-34 2.2E-39 241.8 20.1 250 53-305 100-369 (406)
41 KOG0268 Sof1-like rRNA process 100.0 1.5E-34 3.2E-39 240.8 16.5 280 12-300 62-345 (433)
42 KOG0288 WD40 repeat protein Ti 100.0 2.5E-34 5.5E-39 243.0 17.8 279 11-298 170-459 (459)
43 KOG0283 WD40 repeat-containing 100.0 1.2E-33 2.7E-38 258.3 23.6 250 14-301 265-577 (712)
44 KOG0306 WD40-repeat-containing 100.0 4.5E-32 9.8E-37 244.5 29.2 286 7-300 364-664 (888)
45 KOG0318 WD40 repeat stress pro 100.0 5.5E-31 1.2E-35 229.0 32.7 285 11-305 54-355 (603)
46 KOG0266 WD40 repeat-containing 100.0 9.6E-32 2.1E-36 248.1 29.9 246 54-301 151-410 (456)
47 KOG1407 WD40 repeat protein [F 100.0 2.6E-31 5.7E-36 212.6 27.1 273 11-291 15-293 (313)
48 KOG0274 Cdc4 and related F-box 100.0 1.6E-31 3.4E-36 246.6 29.3 276 15-305 207-487 (537)
49 KOG0306 WD40-repeat-containing 100.0 1.1E-31 2.3E-36 242.1 27.4 292 1-301 50-485 (888)
50 PLN00181 protein SPA1-RELATED; 100.0 7.8E-31 1.7E-35 258.8 34.2 259 40-301 457-739 (793)
51 KOG0310 Conserved WD40 repeat- 100.0 9E-32 1.9E-36 232.1 23.8 276 17-298 27-307 (487)
52 KOG0265 U5 snRNP-specific prot 100.0 1.8E-31 3.9E-36 217.4 24.0 269 53-325 39-320 (338)
53 KOG0284 Polyadenylation factor 100.0 7.9E-33 1.7E-37 233.7 16.5 236 61-300 96-337 (464)
54 KOG1446 Histone H3 (Lys4) meth 100.0 9.2E-30 2E-34 209.2 33.1 281 9-299 7-302 (311)
55 cd00200 WD40 WD40 domain, foun 100.0 4.5E-30 9.7E-35 222.6 33.2 245 54-301 2-250 (289)
56 KOG0316 Conserved WD40 repeat- 100.0 2.4E-31 5.3E-36 209.8 21.9 244 53-301 9-258 (307)
57 KOG0282 mRNA splicing factor [ 100.0 1.4E-32 3E-37 236.8 15.0 248 52-302 205-464 (503)
58 KOG0645 WD40 repeat protein [G 100.0 1.9E-30 4.2E-35 208.6 25.8 238 13-258 58-311 (312)
59 KOG0301 Phospholipase A2-activ 100.0 1.4E-30 3E-35 233.2 26.9 280 7-302 5-290 (745)
60 KOG0305 Anaphase promoting com 100.0 3.4E-30 7.4E-35 229.9 28.9 268 31-302 188-463 (484)
61 PTZ00421 coronin; Provisional 100.0 1.3E-29 2.8E-34 233.6 32.9 227 9-238 68-314 (493)
62 KOG0277 Peroxisomal targeting 100.0 3.1E-31 6.7E-36 211.4 18.6 241 16-299 60-308 (311)
63 KOG0299 U3 snoRNP-associated p 100.0 7.1E-30 1.5E-34 218.9 26.3 283 9-298 135-454 (479)
64 KOG0294 WD40 repeat-containing 100.0 1.2E-29 2.6E-34 208.1 26.2 243 54-302 36-283 (362)
65 KOG0276 Vesicle coat complex C 100.0 1.3E-30 2.9E-35 230.8 22.1 245 54-300 6-257 (794)
66 KOG0281 Beta-TrCP (transducin 100.0 1.3E-31 2.9E-36 222.2 14.7 240 6-262 227-481 (499)
67 KOG0292 Vesicle coat complex C 100.0 4.2E-30 9.2E-35 235.5 25.4 278 16-300 9-321 (1202)
68 KOG0300 WD40 repeat-containing 100.0 4.3E-30 9.4E-35 211.0 22.5 287 10-302 142-478 (481)
69 KOG0289 mRNA splicing factor [ 100.0 1.2E-29 2.6E-34 216.0 25.7 277 18-299 221-505 (506)
70 KOG0274 Cdc4 and related F-box 100.0 1E-29 2.3E-34 234.6 27.2 241 12-266 245-490 (537)
71 PTZ00421 coronin; Provisional 100.0 1.1E-28 2.5E-33 227.3 33.5 262 15-282 19-315 (493)
72 KOG0292 Vesicle coat complex C 100.0 2.6E-30 5.6E-35 236.9 21.0 244 56-302 4-282 (1202)
73 KOG0308 Conserved WD40 repeat- 100.0 2.6E-30 5.6E-35 229.9 19.8 282 15-300 20-327 (735)
74 KOG4283 Transcription-coupled 100.0 5.5E-29 1.2E-33 202.6 25.8 286 12-300 39-365 (397)
75 KOG0647 mRNA export protein (c 100.0 4.2E-29 9.1E-34 203.8 23.9 270 14-291 25-315 (347)
76 PTZ00420 coronin; Provisional 100.0 7.6E-28 1.7E-32 223.0 31.6 244 37-283 50-319 (568)
77 KOG0641 WD40 repeat protein [G 100.0 6.5E-27 1.4E-31 184.0 31.8 278 14-299 30-348 (350)
78 KOG0294 WD40 repeat-containing 100.0 3.7E-28 8.1E-33 199.4 25.6 241 11-260 38-283 (362)
79 KOG1036 Mitotic spindle checkp 100.0 3.4E-28 7.3E-33 199.1 24.7 265 15-290 12-294 (323)
80 KOG0296 Angio-associated migra 100.0 3.6E-28 7.9E-33 202.9 24.6 248 7-258 97-398 (399)
81 KOG0772 Uncharacterized conser 100.0 2.1E-28 4.7E-33 212.5 23.6 283 10-297 161-484 (641)
82 KOG0268 Sof1-like rRNA process 100.0 8E-30 1.7E-34 212.6 13.7 243 51-302 56-304 (433)
83 PTZ00420 coronin; Provisional 100.0 5.9E-27 1.3E-31 217.1 34.1 223 78-301 49-294 (568)
84 KOG0289 mRNA splicing factor [ 100.0 5.5E-28 1.2E-32 205.9 24.5 243 8-257 253-505 (506)
85 KOG0310 Conserved WD40 repeat- 100.0 3E-28 6.5E-33 210.4 23.0 237 15-258 67-309 (487)
86 KOG0313 Microtubule binding pr 100.0 3.8E-28 8.3E-33 203.7 22.8 240 59-303 103-379 (423)
87 KOG0264 Nucleosome remodeling 100.0 6.3E-28 1.4E-32 206.8 22.9 258 14-301 122-405 (422)
88 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 8E-26 1.7E-30 198.8 36.7 267 32-303 2-282 (300)
89 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-26 4.7E-31 189.4 29.5 246 53-302 6-264 (311)
90 KOG0973 Histone transcription 100.0 4.9E-27 1.1E-31 220.4 28.5 291 6-301 3-356 (942)
91 KOG0299 U3 snoRNP-associated p 100.0 3.6E-27 7.7E-32 202.4 25.0 268 54-325 135-437 (479)
92 KOG1036 Mitotic spindle checkp 100.0 8.1E-27 1.8E-31 191.1 25.7 275 60-346 12-302 (323)
93 KOG0278 Serine/threonine kinas 100.0 9E-29 1.9E-33 197.0 13.9 243 11-262 54-301 (334)
94 KOG0305 Anaphase promoting com 100.0 4.8E-27 1E-31 209.8 25.4 240 14-260 215-463 (484)
95 KOG0277 Peroxisomal targeting 100.0 4.5E-27 9.8E-32 187.7 22.4 237 65-301 12-266 (311)
96 KOG0275 Conserved WD40 repeat- 100.0 4.7E-28 1E-32 199.7 17.3 243 59-303 211-470 (508)
97 KOG0293 WD40 repeat-containing 100.0 4.7E-27 1E-31 199.1 21.7 271 54-328 217-497 (519)
98 KOG1407 WD40 repeat protein [F 100.0 1.3E-26 2.8E-31 185.7 21.7 244 55-302 14-263 (313)
99 KOG0647 mRNA export protein (c 100.0 3.5E-26 7.5E-31 186.8 22.7 239 59-301 25-282 (347)
100 KOG0288 WD40 repeat protein Ti 99.9 9E-27 1.9E-31 197.4 17.8 236 11-255 214-458 (459)
101 KOG0639 Transducin-like enhanc 99.9 2E-26 4.3E-31 199.8 20.0 278 14-299 417-703 (705)
102 KOG1273 WD40 repeat protein [G 99.9 1E-25 2.2E-30 185.2 21.6 279 19-302 26-324 (405)
103 KOG1332 Vesicle coat complex C 99.9 4.3E-26 9.3E-31 181.1 17.8 247 13-299 8-285 (299)
104 KOG0301 Phospholipase A2-activ 99.9 1.8E-25 3.9E-30 200.6 22.5 232 12-259 53-289 (745)
105 KOG0973 Histone transcription 99.9 6.7E-25 1.5E-29 206.2 27.2 275 60-336 12-369 (942)
106 KOG0308 Conserved WD40 repeat- 99.9 8.7E-26 1.9E-30 201.3 19.1 230 71-301 35-286 (735)
107 KOG1408 WD40 repeat protein [F 99.9 3.3E-25 7.2E-30 199.5 22.7 266 33-300 394-713 (1080)
108 KOG0300 WD40 repeat-containing 99.9 3.2E-25 6.9E-30 182.5 20.5 247 52-302 139-430 (481)
109 KOG1539 WD repeat protein [Gen 99.9 4.9E-24 1.1E-28 195.0 30.2 290 9-303 195-609 (910)
110 KOG0646 WD40 repeat protein [G 99.9 1.3E-24 2.9E-29 187.0 25.0 265 33-301 9-308 (476)
111 KOG4328 WD40 protein [Function 99.9 9.5E-25 2.1E-29 187.5 23.7 287 11-299 181-494 (498)
112 KOG1408 WD40 repeat protein [F 99.9 1.6E-24 3.6E-29 195.1 25.2 283 14-302 76-536 (1080)
113 KOG0641 WD40 repeat protein [G 99.9 1.5E-23 3.1E-28 165.2 27.3 247 53-302 25-305 (350)
114 KOG2096 WD40 repeat protein [G 99.9 2E-24 4.3E-29 177.9 23.3 248 11-298 81-400 (420)
115 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.9E-23 6.3E-28 182.5 32.7 260 12-280 27-300 (300)
116 KOG0269 WD40 repeat-containing 99.9 8.9E-26 1.9E-30 204.8 16.7 236 20-258 91-340 (839)
117 KOG2055 WD40 repeat protein [G 99.9 3.9E-24 8.4E-29 183.9 24.9 276 17-299 214-511 (514)
118 KOG0772 Uncharacterized conser 99.9 8.7E-25 1.9E-29 190.2 19.5 248 52-300 158-445 (641)
119 KOG0283 WD40 repeat-containing 99.9 7.6E-25 1.6E-29 201.0 19.6 204 8-218 361-578 (712)
120 KOG0643 Translation initiation 99.9 9.4E-24 2E-28 170.0 23.1 242 11-258 47-317 (327)
121 KOG0264 Nucleosome remodeling 99.9 1.5E-24 3.4E-29 186.1 19.7 205 10-216 171-404 (422)
122 KOG0321 WD40 repeat-containing 99.9 8.3E-24 1.8E-28 188.4 24.3 280 21-301 54-392 (720)
123 KOG2445 Nuclear pore complex c 99.9 3E-23 6.4E-28 170.2 24.6 241 58-299 10-317 (361)
124 KOG1274 WD40 repeat protein [G 99.9 5.5E-23 1.2E-27 190.1 28.5 276 10-297 6-297 (933)
125 KOG1063 RNA polymerase II elon 99.9 6E-23 1.3E-27 184.5 26.4 295 7-302 182-650 (764)
126 KOG0650 WD40 repeat nucleolar 99.9 3.8E-23 8.2E-28 183.0 24.3 280 10-297 394-732 (733)
127 KOG0640 mRNA cleavage stimulat 99.9 7.4E-24 1.6E-28 173.9 18.3 242 12-258 168-426 (430)
128 KOG2106 Uncharacterized conser 99.9 9.7E-22 2.1E-26 171.0 32.3 273 16-301 200-478 (626)
129 KOG0639 Transducin-like enhanc 99.9 4.3E-24 9.4E-29 185.4 17.6 240 59-302 417-665 (705)
130 KOG0650 WD40 repeat nucleolar 99.9 1.2E-23 2.7E-28 186.1 20.3 244 53-298 392-678 (733)
131 KOG2096 WD40 repeat protein [G 99.9 8.2E-23 1.8E-27 168.4 23.7 258 43-304 63-364 (420)
132 KOG0270 WD40 repeat-containing 99.9 3E-23 6.4E-28 177.7 21.8 233 29-262 190-453 (463)
133 KOG1538 Uncharacterized conser 99.9 8E-23 1.7E-27 183.1 23.5 269 18-299 14-292 (1081)
134 KOG1539 WD repeat protein [Gen 99.9 4.4E-22 9.5E-27 182.3 28.3 278 16-299 244-647 (910)
135 KOG1274 WD40 repeat protein [G 99.9 4.5E-22 9.7E-27 184.1 26.9 239 58-301 10-263 (933)
136 KOG0267 Microtubule severing p 99.9 3.1E-24 6.7E-29 193.6 11.6 253 31-292 4-260 (825)
137 KOG0269 WD40 repeat-containing 99.9 2.2E-23 4.8E-28 189.4 17.1 233 66-299 92-339 (839)
138 KOG0307 Vesicle coat complex C 99.9 1.1E-23 2.5E-28 198.9 15.6 242 62-303 65-330 (1049)
139 KOG2048 WD40 repeat protein [G 99.9 3.2E-21 7E-26 173.1 29.8 275 17-299 26-318 (691)
140 KOG1188 WD40 repeat protein [G 99.9 1.9E-22 4.1E-27 167.7 19.5 280 20-299 25-345 (376)
141 KOG4227 WD40 repeat protein [G 99.9 1E-21 2.2E-26 166.1 23.9 284 12-300 52-387 (609)
142 KOG2106 Uncharacterized conser 99.9 1.3E-20 2.8E-25 164.0 30.4 270 17-300 247-521 (626)
143 KOG1332 Vesicle coat complex C 99.9 1.3E-22 2.8E-27 161.5 16.3 209 7-216 47-286 (299)
144 KOG0267 Microtubule severing p 99.9 9.8E-24 2.1E-28 190.3 11.1 196 11-211 65-262 (825)
145 KOG4378 Nuclear protein COP1 [ 99.9 5.4E-22 1.2E-26 172.3 20.4 257 19-282 37-305 (673)
146 KOG0303 Actin-binding protein 99.9 7.7E-22 1.7E-26 166.8 20.6 223 12-238 77-320 (472)
147 KOG0302 Ribosome Assembly prot 99.9 2.8E-22 6.1E-27 168.5 17.7 164 11-176 206-378 (440)
148 KOG0642 Cell-cycle nuclear pro 99.9 2E-22 4.3E-27 177.5 15.6 258 9-302 287-563 (577)
149 KOG1445 Tumor-specific antigen 99.9 1.3E-21 2.8E-26 174.5 20.3 176 168-343 603-794 (1012)
150 KOG0646 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 168.2 19.9 247 16-299 81-349 (476)
151 KOG2919 Guanine nucleotide-bin 99.9 1.7E-20 3.7E-25 155.1 24.4 266 21-291 54-361 (406)
152 KOG0302 Ribosome Assembly prot 99.9 5.6E-21 1.2E-25 160.8 21.7 201 14-216 149-378 (440)
153 KOG4378 Nuclear protein COP1 [ 99.9 4.5E-21 9.8E-26 166.6 21.5 265 36-303 7-283 (673)
154 COG2319 FOG: WD40 repeat [Gene 99.9 7.8E-19 1.7E-23 160.3 37.1 285 10-301 149-443 (466)
155 KOG0322 G-protein beta subunit 99.9 3.2E-21 7E-26 155.2 18.3 285 7-299 5-322 (323)
156 COG2319 FOG: WD40 repeat [Gene 99.9 2.4E-18 5.1E-23 157.2 39.7 288 11-303 60-362 (466)
157 KOG2445 Nuclear pore complex c 99.9 1E-19 2.2E-24 149.6 25.5 242 13-259 10-319 (361)
158 KOG1034 Transcriptional repres 99.9 6.2E-21 1.4E-25 157.9 18.6 254 15-299 88-382 (385)
159 KOG0270 WD40 repeat-containing 99.9 2.4E-21 5.2E-26 166.1 16.4 207 13-221 240-454 (463)
160 KOG0321 WD40 repeat-containing 99.9 1.7E-20 3.7E-25 167.5 20.3 246 11-260 95-393 (720)
161 KOG4283 Transcription-coupled 99.9 2.7E-20 5.9E-25 152.1 19.1 206 100-305 41-281 (397)
162 KOG1007 WD repeat protein TSSC 99.9 4.1E-20 8.9E-25 150.6 19.7 275 9-300 56-361 (370)
163 KOG1063 RNA polymerase II elon 99.9 1.5E-19 3.3E-24 162.8 23.8 295 2-299 40-390 (764)
164 KOG0644 Uncharacterized conser 99.9 5.2E-21 1.1E-25 175.3 12.7 278 12-302 186-470 (1113)
165 KOG0649 WD40 repeat protein [G 99.8 2.6E-18 5.7E-23 137.0 25.7 258 29-297 20-313 (325)
166 PRK11028 6-phosphogluconolacto 99.8 1.8E-17 3.8E-22 148.1 32.4 264 35-300 6-304 (330)
167 KOG1310 WD40 repeat protein [G 99.8 1E-18 2.2E-23 153.8 23.2 167 7-176 41-231 (758)
168 KOG4328 WD40 protein [Function 99.8 5.2E-19 1.1E-23 152.4 20.2 250 6-258 224-495 (498)
169 KOG1009 Chromatin assembly com 99.8 1.1E-18 2.4E-23 148.4 21.7 279 17-299 14-371 (434)
170 KOG2048 WD40 repeat protein [G 99.8 9.6E-18 2.1E-22 151.0 27.3 237 60-301 24-276 (691)
171 KOG2055 WD40 repeat protein [G 99.8 8E-19 1.7E-23 151.4 19.3 238 61-300 213-467 (514)
172 KOG1517 Guanine nucleotide bin 99.8 3E-18 6.6E-23 161.0 23.9 279 17-301 1065-1382(1387)
173 KOG1587 Cytoplasmic dynein int 99.8 8.8E-18 1.9E-22 154.7 25.4 260 41-301 222-517 (555)
174 KOG0303 Actin-binding protein 99.8 1.6E-18 3.4E-23 147.0 17.9 203 56-261 76-297 (472)
175 KOG1963 WD40 repeat protein [G 99.8 7.4E-17 1.6E-21 149.4 29.8 284 13-301 202-539 (792)
176 KOG0307 Vesicle coat complex C 99.8 2.2E-19 4.8E-24 170.2 13.6 241 20-261 68-330 (1049)
177 KOG1034 Transcriptional repres 99.8 2.8E-19 6.2E-24 148.2 12.1 200 12-215 131-382 (385)
178 PRK01742 tolB translocation pr 99.8 7.3E-18 1.6E-22 155.3 22.0 237 40-281 183-426 (429)
179 KOG1007 WD repeat protein TSSC 99.8 1.2E-17 2.5E-22 136.4 18.4 203 100-304 61-293 (370)
180 KOG0644 Uncharacterized conser 99.8 4.1E-19 8.9E-24 163.1 11.0 238 54-303 183-429 (1113)
181 KOG1273 WD40 repeat protein [G 99.8 2.9E-17 6.3E-22 135.7 19.9 202 95-300 17-226 (405)
182 KOG1334 WD40 repeat protein [G 99.8 4.8E-18 1E-22 147.7 14.7 288 9-299 135-465 (559)
183 KOG1240 Protein kinase contain 99.8 2.1E-16 4.5E-21 151.0 25.1 256 46-302 1034-1336(1431)
184 KOG0290 Conserved WD40 repeat- 99.8 4.9E-16 1.1E-20 127.2 22.6 274 18-295 46-360 (364)
185 KOG2919 Guanine nucleotide-bin 99.8 2.4E-16 5.1E-21 130.8 20.5 228 17-247 105-359 (406)
186 KOG1240 Protein kinase contain 99.7 1E-15 2.3E-20 146.2 25.2 289 4-298 1038-1431(1431)
187 KOG1963 WD40 repeat protein [G 99.7 6.1E-15 1.3E-19 136.9 27.0 280 12-300 12-322 (792)
188 KOG0649 WD40 repeat protein [G 99.7 7.8E-15 1.7E-19 117.4 23.9 195 12-217 58-275 (325)
189 KOG1538 Uncharacterized conser 99.7 4E-16 8.6E-21 140.6 18.2 236 11-258 48-293 (1081)
190 KOG1188 WD40 repeat protein [G 99.7 8.7E-16 1.9E-20 128.3 18.9 253 2-257 56-345 (376)
191 KOG1587 Cytoplasmic dynein int 99.7 1.9E-15 4.1E-20 139.4 22.6 242 15-259 241-517 (555)
192 KOG0290 Conserved WD40 repeat- 99.7 8.4E-16 1.8E-20 125.8 17.5 198 13-212 147-361 (364)
193 KOG0771 Prolactin regulatory e 99.7 5E-16 1.1E-20 133.1 16.2 199 65-300 148-354 (398)
194 PRK11028 6-phosphogluconolacto 99.7 8.7E-14 1.9E-18 124.3 31.4 237 17-258 35-304 (330)
195 PF02239 Cytochrom_D1: Cytochr 99.7 4.8E-14 1E-18 126.4 29.3 277 20-302 40-349 (369)
196 KOG1523 Actin-related protein 99.7 2.1E-14 4.6E-19 119.1 22.9 201 15-219 9-239 (361)
197 KOG1517 Guanine nucleotide bin 99.7 8.7E-15 1.9E-19 138.2 22.6 236 64-301 1067-1334(1387)
198 KOG0642 Cell-cycle nuclear pro 99.7 3.3E-16 7.2E-21 138.6 12.5 207 8-220 336-565 (577)
199 KOG1009 Chromatin assembly com 99.7 4E-15 8.7E-20 126.9 18.2 253 5-262 54-376 (434)
200 KOG4227 WD40 repeat protein [G 99.7 2.2E-15 4.8E-20 128.1 16.2 246 53-301 48-323 (609)
201 PRK01742 tolB translocation pr 99.7 1.5E-14 3.3E-19 133.4 22.0 210 82-299 183-400 (429)
202 KOG0771 Prolactin regulatory e 99.7 2.2E-15 4.7E-20 129.2 15.0 191 20-215 148-353 (398)
203 KOG1310 WD40 repeat protein [G 99.7 9.4E-16 2E-20 135.4 12.8 164 53-216 42-231 (758)
204 KOG1524 WD40 repeat-containing 99.7 1.8E-14 3.8E-19 127.1 20.4 260 14-296 12-282 (737)
205 KOG2110 Uncharacterized conser 99.7 3.5E-13 7.5E-18 114.0 26.9 232 63-304 7-252 (391)
206 PRK02889 tolB translocation pr 99.7 9.7E-14 2.1E-18 127.9 25.9 236 42-281 177-425 (427)
207 KOG2110 Uncharacterized conser 99.6 6E-12 1.3E-16 106.7 32.4 277 18-302 7-332 (391)
208 PF02239 Cytochrom_D1: Cytochr 99.6 7.5E-13 1.6E-17 118.7 28.6 267 34-302 9-304 (369)
209 KOG1272 WD40-repeat-containing 99.6 4.1E-15 8.9E-20 128.9 13.3 269 18-297 131-406 (545)
210 PRK03629 tolB translocation pr 99.6 4E-13 8.7E-18 123.7 27.2 234 42-281 180-428 (429)
211 PRK05137 tolB translocation pr 99.6 1.1E-12 2.5E-17 121.3 28.3 232 42-280 183-432 (435)
212 PRK04922 tolB translocation pr 99.6 3.4E-13 7.3E-18 124.7 24.4 233 42-280 185-432 (433)
213 KOG3881 Uncharacterized conser 99.6 2E-13 4.3E-18 116.3 20.4 235 61-301 55-321 (412)
214 KOG1445 Tumor-specific antigen 99.6 1.4E-14 2.9E-19 130.2 14.0 201 16-218 627-846 (1012)
215 KOG2321 WD40 repeat protein [G 99.6 9.2E-13 2E-17 117.3 24.9 277 14-300 49-343 (703)
216 KOG4497 Uncharacterized conser 99.6 2.8E-12 6.1E-17 107.1 25.0 257 36-295 66-427 (447)
217 KOG1524 WD40 repeat-containing 99.6 8.5E-14 1.8E-18 122.9 16.2 206 32-254 76-282 (737)
218 KOG2111 Uncharacterized conser 99.6 3.6E-12 7.7E-17 106.0 24.1 232 21-301 10-257 (346)
219 PRK03629 tolB translocation pr 99.6 8.3E-12 1.8E-16 115.1 28.1 212 84-300 180-406 (429)
220 KOG2139 WD40 repeat protein [G 99.5 3.8E-12 8.3E-17 107.6 22.5 237 63-301 100-384 (445)
221 PRK05137 tolB translocation pr 99.5 1.3E-11 2.9E-16 114.2 27.9 213 83-300 182-412 (435)
222 PRK04922 tolB translocation pr 99.5 2.7E-12 5.8E-17 118.7 23.1 200 12-218 199-413 (433)
223 KOG1354 Serine/threonine prote 99.5 3.2E-12 6.8E-17 107.4 20.9 241 16-261 25-362 (433)
224 KOG1334 WD40 repeat protein [G 99.5 2.3E-13 4.9E-18 118.9 14.0 247 53-300 134-424 (559)
225 KOG1272 WD40-repeat-containing 99.5 8.4E-14 1.8E-18 120.9 9.8 225 65-298 133-360 (545)
226 KOG4497 Uncharacterized conser 99.5 1.5E-13 3.3E-18 114.6 10.7 218 67-297 14-237 (447)
227 KOG2321 WD40 repeat protein [G 99.5 5.8E-13 1.3E-17 118.6 14.8 191 20-213 137-340 (703)
228 KOG2394 WD40 protein DMR-N9 [G 99.5 7.6E-14 1.6E-18 123.2 9.0 93 16-111 290-383 (636)
229 PF08662 eIF2A: Eukaryotic tra 99.5 1.7E-12 3.8E-17 106.0 15.4 111 15-132 58-179 (194)
230 TIGR02800 propeller_TolB tol-p 99.5 5.9E-11 1.3E-15 109.6 26.5 211 42-257 171-396 (417)
231 KOG0974 WD-repeat protein WDR6 99.5 1.2E-11 2.6E-16 117.3 21.5 144 30-178 144-290 (967)
232 KOG3881 Uncharacterized conser 99.5 1.5E-11 3.2E-16 105.0 19.8 206 11-223 100-327 (412)
233 KOG2111 Uncharacterized conser 99.5 1.4E-10 3E-15 96.7 24.9 172 41-217 75-257 (346)
234 PRK02889 tolB translocation pr 99.4 5.4E-11 1.2E-15 109.8 24.5 205 82-292 175-392 (427)
235 PRK00178 tolB translocation pr 99.4 1.6E-10 3.5E-15 107.0 27.5 233 43-281 181-428 (430)
236 PF08662 eIF2A: Eukaryotic tra 99.4 3.3E-11 7.1E-16 98.5 20.3 155 21-184 10-186 (194)
237 PRK04792 tolB translocation pr 99.4 1.2E-10 2.7E-15 107.8 26.5 233 42-280 199-446 (448)
238 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.2E-09 6.9E-14 93.6 33.8 255 41-303 27-333 (352)
239 KOG2315 Predicted translation 99.4 1.3E-10 2.9E-15 103.6 24.8 274 18-301 75-391 (566)
240 KOG1523 Actin-related protein 99.4 1.9E-11 4.2E-16 101.8 17.4 199 102-302 10-238 (361)
241 TIGR02800 propeller_TolB tol-p 99.4 2.3E-10 5E-15 105.6 26.3 206 82-292 169-386 (417)
242 KOG2139 WD40 repeat protein [G 99.4 3.3E-11 7.1E-16 102.0 18.5 183 104-290 100-301 (445)
243 KOG2394 WD40 protein DMR-N9 [G 99.4 4.2E-11 9.2E-16 106.1 19.4 192 71-280 183-384 (636)
244 PF10282 Lactonase: Lactonase, 99.4 6.5E-09 1.4E-13 93.2 33.2 264 35-300 3-322 (345)
245 PF10282 Lactonase: Lactonase, 99.4 2.4E-08 5.2E-13 89.6 35.2 255 20-278 40-345 (345)
246 KOG0322 G-protein beta subunit 99.4 1E-11 2.2E-16 100.8 11.8 140 33-175 167-322 (323)
247 PRK00178 tolB translocation pr 99.3 2.2E-09 4.8E-14 99.4 26.8 211 84-299 180-405 (430)
248 KOG1064 RAVE (regulator of V-A 99.3 8E-11 1.7E-15 117.2 14.9 196 56-266 2203-2406(2439)
249 PRK04792 tolB translocation pr 99.3 5.6E-09 1.2E-13 96.8 26.3 211 84-299 199-424 (448)
250 KOG4190 Uncharacterized conser 99.3 3.8E-11 8.2E-16 107.0 11.1 278 9-296 728-1032(1034)
251 KOG1064 RAVE (regulator of V-A 99.3 4.2E-11 9E-16 119.2 12.4 196 17-226 2209-2408(2439)
252 TIGR03300 assembly_YfgL outer 99.3 2.5E-08 5.4E-13 90.8 29.8 258 31-302 65-340 (377)
253 PRK01029 tolB translocation pr 99.3 1.5E-08 3.2E-13 93.4 28.2 237 43-282 167-426 (428)
254 KOG0974 WD-repeat protein WDR6 99.3 3E-11 6.5E-16 114.6 10.5 121 7-133 166-289 (967)
255 TIGR02658 TTQ_MADH_Hv methylam 99.2 6.3E-08 1.4E-12 85.5 29.5 236 24-266 53-338 (352)
256 KOG0309 Conserved WD40 repeat- 99.2 2.2E-10 4.8E-15 105.2 14.4 278 18-300 26-339 (1081)
257 TIGR03300 assembly_YfgL outer 99.2 2E-08 4.3E-13 91.5 27.4 256 31-297 105-376 (377)
258 KOG1409 Uncharacterized conser 99.2 1E-09 2.2E-14 92.5 17.1 247 52-302 15-272 (404)
259 KOG0280 Uncharacterized conser 99.2 3.5E-09 7.6E-14 87.6 19.5 261 39-299 44-332 (339)
260 KOG1409 Uncharacterized conser 99.2 1.2E-09 2.7E-14 92.1 17.0 279 17-302 69-396 (404)
261 KOG1354 Serine/threonine prote 99.2 1.8E-09 3.9E-14 91.1 18.0 238 62-303 26-362 (433)
262 PRK01029 tolB translocation pr 99.2 1.8E-08 3.9E-13 92.8 26.4 216 18-237 186-424 (428)
263 KOG4547 WD40 repeat-containing 99.2 4.4E-09 9.5E-14 94.6 21.4 185 29-217 3-221 (541)
264 PLN02919 haloacid dehalogenase 99.2 4.1E-08 8.9E-13 99.5 30.9 233 66-302 572-890 (1057)
265 KOG3914 WD repeat protein WDR4 99.2 4.3E-10 9.3E-15 96.6 13.2 157 29-187 72-234 (390)
266 KOG4190 Uncharacterized conser 99.2 2.1E-10 4.6E-15 102.3 10.6 237 55-298 729-986 (1034)
267 KOG0280 Uncharacterized conser 99.2 9.6E-09 2.1E-13 85.0 19.4 198 19-216 72-284 (339)
268 PLN02919 haloacid dehalogenase 99.1 1.9E-07 4.1E-12 94.7 31.8 237 21-262 572-892 (1057)
269 KOG4547 WD40 repeat-containing 99.1 1.1E-08 2.4E-13 92.1 19.2 209 70-301 2-221 (541)
270 COG5354 Uncharacterized protei 99.1 1.6E-07 3.5E-12 83.4 25.6 271 19-301 74-396 (561)
271 COG5170 CDC55 Serine/threonine 99.1 8.7E-09 1.9E-13 86.0 16.4 209 15-227 25-321 (460)
272 COG2706 3-carboxymuconate cycl 99.1 2.4E-06 5.2E-11 73.2 31.4 262 14-279 37-345 (346)
273 KOG0882 Cyclophilin-related pe 99.1 3.7E-09 8E-14 92.2 14.6 245 15-266 8-313 (558)
274 COG5354 Uncharacterized protei 99.1 2.2E-07 4.7E-12 82.6 24.3 273 17-300 33-348 (561)
275 PF00400 WD40: WD domain, G-be 99.0 1.3E-09 2.7E-14 64.3 5.9 38 52-89 2-39 (39)
276 PF04762 IKI3: IKI3 family; I 99.0 1.4E-06 3.1E-11 86.9 30.6 274 16-300 75-456 (928)
277 KOG2314 Translation initiation 99.0 4.6E-07 1E-11 81.4 23.8 270 21-301 215-526 (698)
278 KOG2066 Vacuolar assembly/sort 99.0 2E-08 4.3E-13 93.6 15.4 182 16-216 39-233 (846)
279 COG4946 Uncharacterized protei 99.0 2.2E-06 4.8E-11 75.8 26.5 172 24-202 327-503 (668)
280 PF00400 WD40: WD domain, G-be 98.9 1.9E-09 4.1E-14 63.5 5.1 38 261-298 2-39 (39)
281 KOG2041 WD40 repeat protein [G 98.9 3E-07 6.5E-12 84.9 21.5 273 19-300 17-337 (1189)
282 KOG1645 RING-finger-containing 98.9 2E-07 4.3E-12 80.6 18.8 243 11-258 188-461 (463)
283 PF13360 PQQ_2: PQQ-like domai 98.9 8.7E-07 1.9E-11 75.1 22.5 217 40-263 2-235 (238)
284 KOG4532 WD40-like repeat conta 98.9 5.3E-07 1.2E-11 74.0 19.4 203 21-224 72-290 (344)
285 KOG2314 Translation initiation 98.9 1E-06 2.2E-11 79.2 21.7 275 19-300 252-573 (698)
286 KOG1832 HIV-1 Vpr-binding prot 98.9 2.4E-09 5.2E-14 100.5 5.4 272 11-301 1096-1399(1516)
287 KOG3914 WD repeat protein WDR4 98.9 5.5E-08 1.2E-12 83.9 13.1 158 107-266 67-231 (390)
288 PRK11138 outer membrane biogen 98.8 1E-05 2.2E-10 74.2 27.1 258 32-299 121-393 (394)
289 PF15492 Nbas_N: Neuroblastoma 98.8 9.1E-06 2E-10 67.7 23.2 218 66-305 2-264 (282)
290 KOG4714 Nucleoporin [Nuclear s 98.8 4.1E-07 8.8E-12 74.4 14.9 159 55-217 83-255 (319)
291 COG5170 CDC55 Serine/threonine 98.8 2.9E-07 6.4E-12 77.0 14.3 201 101-302 25-311 (460)
292 PRK04043 tolB translocation pr 98.8 6.6E-06 1.4E-10 75.5 24.3 207 83-297 169-395 (419)
293 PRK04043 tolB translocation pr 98.7 1.9E-05 4.1E-10 72.5 26.7 191 63-259 189-401 (419)
294 PF08450 SGL: SMP-30/Gluconola 98.7 5.4E-05 1.2E-09 64.6 27.9 213 66-286 4-241 (246)
295 COG2706 3-carboxymuconate cycl 98.7 0.00011 2.5E-09 63.2 31.8 260 41-301 16-322 (346)
296 PF04762 IKI3: IKI3 family; I 98.7 2.4E-05 5.2E-10 78.4 28.7 266 18-300 211-519 (928)
297 KOG2315 Predicted translation 98.7 2.6E-05 5.6E-10 70.5 25.9 272 17-301 35-345 (566)
298 KOG0882 Cyclophilin-related pe 98.7 1.6E-07 3.5E-12 82.2 11.4 203 59-265 7-238 (558)
299 KOG0309 Conserved WD40 repeat- 98.7 1.6E-07 3.5E-12 86.9 11.3 208 7-216 105-339 (1081)
300 PRK11138 outer membrane biogen 98.7 2.1E-05 4.5E-10 72.1 24.5 260 31-302 69-355 (394)
301 PF08450 SGL: SMP-30/Gluconola 98.7 0.00018 4E-09 61.3 28.9 204 22-236 5-233 (246)
302 KOG2695 WD40 repeat protein [G 98.7 7.2E-08 1.6E-12 81.7 7.1 160 23-189 218-389 (425)
303 KOG2041 WD40 repeat protein [G 98.6 4.2E-06 9.2E-11 77.6 18.9 197 6-205 61-276 (1189)
304 PF15492 Nbas_N: Neuroblastoma 98.6 3.1E-05 6.7E-10 64.6 22.1 194 21-229 48-272 (282)
305 KOG1645 RING-finger-containing 98.6 1.1E-05 2.4E-10 70.1 20.0 242 54-299 186-460 (463)
306 KOG4714 Nucleoporin [Nuclear s 98.6 9.8E-07 2.1E-11 72.2 12.8 146 31-177 101-255 (319)
307 KOG2695 WD40 repeat protein [G 98.6 1.3E-07 2.9E-12 80.1 8.0 153 75-228 226-388 (425)
308 PF13360 PQQ_2: PQQ-like domai 98.6 2.8E-05 6.2E-10 65.8 22.2 212 82-302 2-232 (238)
309 KOG1275 PAB-dependent poly(A) 98.6 1.5E-06 3.2E-11 82.5 14.9 180 113-298 146-340 (1118)
310 PRK02888 nitrous-oxide reducta 98.6 4E-05 8.7E-10 71.8 23.6 221 69-302 200-463 (635)
311 KOG1832 HIV-1 Vpr-binding prot 98.6 6E-08 1.3E-12 91.4 5.0 197 52-264 1092-1297(1516)
312 KOG2114 Vacuolar assembly/sort 98.5 6E-05 1.3E-09 71.6 23.8 193 30-224 34-251 (933)
313 KOG4532 WD40-like repeat conta 98.5 2.5E-05 5.5E-10 64.4 18.7 148 34-184 131-290 (344)
314 PF07433 DUF1513: Protein of u 98.5 8.1E-05 1.8E-09 63.9 22.4 185 22-211 56-280 (305)
315 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00017 3.8E-09 65.0 24.9 256 29-286 2-343 (353)
316 KOG1912 WD40 repeat protein [G 98.5 3.2E-05 7E-10 72.6 20.0 282 15-302 14-366 (1062)
317 KOG1275 PAB-dependent poly(A) 98.4 3E-06 6.5E-11 80.5 12.2 144 30-176 186-342 (1118)
318 PF11768 DUF3312: Protein of u 98.4 2.4E-05 5.2E-10 71.5 16.5 112 20-134 209-331 (545)
319 KOG3621 WD40 repeat-containing 98.3 0.00022 4.7E-09 66.6 21.7 125 30-154 44-179 (726)
320 COG4946 Uncharacterized protei 98.3 0.0017 3.7E-08 58.1 25.9 188 110-301 274-478 (668)
321 PF07433 DUF1513: Protein of u 98.3 0.0019 4.1E-08 55.7 26.0 221 66-292 9-278 (305)
322 KOG1912 WD40 repeat protein [G 98.3 0.00035 7.5E-09 66.0 21.2 235 62-300 16-304 (1062)
323 KOG3617 WD40 and TPR repeat-co 98.2 4.3E-05 9.3E-10 72.5 15.1 105 26-132 22-131 (1416)
324 KOG1920 IkappaB kinase complex 98.2 0.0032 7E-08 62.5 28.1 231 17-256 69-363 (1265)
325 KOG1920 IkappaB kinase complex 98.2 0.00095 2.1E-08 66.1 23.1 234 62-301 69-323 (1265)
326 PF00780 CNH: CNH domain; Int 98.2 0.004 8.7E-08 54.0 27.1 224 30-268 6-265 (275)
327 PRK02888 nitrous-oxide reducta 98.0 0.0069 1.5E-07 57.2 24.9 186 26-217 199-405 (635)
328 cd00216 PQQ_DH Dehydrogenases 98.0 0.0061 1.3E-07 57.5 25.1 227 32-267 111-433 (488)
329 KOG2066 Vacuolar assembly/sort 98.0 0.001 2.2E-08 63.1 19.3 180 62-258 40-233 (846)
330 PF04053 Coatomer_WDAD: Coatom 98.0 0.004 8.7E-08 57.4 23.1 217 62-300 33-262 (443)
331 KOG1008 Uncharacterized conser 98.0 2.7E-06 6E-11 77.9 2.3 198 103-301 57-276 (783)
332 COG0823 TolB Periplasmic compo 98.0 0.0019 4E-08 59.3 20.6 169 51-219 182-361 (425)
333 KOG2114 Vacuolar assembly/sort 98.0 0.0034 7.3E-08 60.2 22.4 203 67-273 29-259 (933)
334 smart00320 WD40 WD40 repeats. 98.0 2.6E-05 5.6E-10 44.4 5.5 39 51-89 2-40 (40)
335 smart00320 WD40 WD40 repeats. 97.9 2.9E-05 6.4E-10 44.2 5.4 38 261-298 3-40 (40)
336 PF08553 VID27: VID27 cytoplas 97.9 0.00052 1.1E-08 66.8 16.1 138 159-299 495-646 (794)
337 cd00216 PQQ_DH Dehydrogenases 97.9 0.016 3.4E-07 54.8 25.5 261 33-303 63-427 (488)
338 PF04053 Coatomer_WDAD: Coatom 97.9 0.0086 1.9E-07 55.3 22.7 178 14-212 30-219 (443)
339 PF11768 DUF3312: Protein of u 97.9 0.0053 1.2E-07 56.6 20.4 88 171-260 239-331 (545)
340 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0034 7.4E-08 45.3 15.0 103 19-127 2-109 (111)
341 PF08553 VID27: VID27 cytoplas 97.8 0.013 2.8E-07 57.4 23.3 133 39-175 502-646 (794)
342 KOG1008 Uncharacterized conser 97.8 7.4E-06 1.6E-10 75.2 1.2 163 12-177 98-276 (783)
343 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.016 3.6E-07 48.2 26.3 92 12-104 28-136 (354)
344 KOG2395 Protein involved in va 97.8 0.00068 1.5E-08 61.5 12.8 142 156-300 344-500 (644)
345 PF06977 SdiA-regulated: SdiA- 97.7 0.02 4.4E-07 48.4 25.8 195 10-208 15-242 (248)
346 PF00780 CNH: CNH domain; Int 97.7 0.025 5.3E-07 49.0 25.3 221 70-302 4-257 (275)
347 PF06977 SdiA-regulated: SdiA- 97.7 0.01 2.2E-07 50.2 19.1 197 142-347 18-241 (248)
348 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0035 7.5E-08 45.3 13.7 101 64-171 2-109 (111)
349 PF03178 CPSF_A: CPSF A subuni 97.7 0.03 6.5E-07 49.8 23.1 208 42-255 3-262 (321)
350 KOG4441 Proteins containing BT 97.6 0.013 2.8E-07 56.2 20.3 223 30-260 284-548 (571)
351 PF06433 Me-amine-dh_H: Methyl 97.6 0.04 8.6E-07 48.3 25.2 236 29-267 45-329 (342)
352 PF03178 CPSF_A: CPSF A subuni 97.6 0.02 4.3E-07 50.9 20.1 207 83-296 2-261 (321)
353 KOG3617 WD40 and TPR repeat-co 97.5 0.00037 8.1E-09 66.4 8.5 107 67-176 21-131 (1416)
354 KOG2444 WD40 repeat protein [G 97.5 0.00031 6.8E-09 57.0 6.2 137 165-302 37-179 (238)
355 COG0823 TolB Periplasmic compo 97.4 0.0082 1.8E-07 55.2 15.8 157 42-202 219-384 (425)
356 PF02897 Peptidase_S9_N: Proly 97.4 0.1 2.2E-06 48.3 26.1 217 65-284 127-384 (414)
357 COG3391 Uncharacterized conser 97.4 0.097 2.1E-06 47.8 29.1 253 43-300 13-283 (381)
358 PF14583 Pectate_lyase22: Olig 97.4 0.093 2E-06 46.9 24.6 270 28-299 44-380 (386)
359 PHA02713 hypothetical protein; 97.3 0.019 4.1E-07 55.1 17.4 219 42-269 273-544 (557)
360 COG3391 Uncharacterized conser 97.3 0.14 2.9E-06 46.8 27.9 215 65-282 77-310 (381)
361 PF06433 Me-amine-dh_H: Methyl 97.2 0.13 2.8E-06 45.2 19.6 195 29-226 104-330 (342)
362 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.15 3.2E-06 46.1 20.6 217 81-299 21-312 (353)
363 KOG4640 Anaphase-promoting com 97.2 0.0026 5.7E-08 58.9 9.0 89 19-111 23-114 (665)
364 PF08596 Lgl_C: Lethal giant l 97.1 0.21 4.5E-06 45.6 23.8 169 58-228 83-302 (395)
365 KOG4441 Proteins containing BT 97.1 0.078 1.7E-06 51.0 19.0 221 72-299 284-545 (571)
366 COG3204 Uncharacterized protei 97.1 0.082 1.8E-06 45.1 16.5 196 142-347 82-303 (316)
367 PF04841 Vps16_N: Vps16, N-ter 97.0 0.14 3E-06 47.2 19.5 31 270-300 216-246 (410)
368 KOG3621 WD40 repeat-containing 97.0 0.011 2.5E-07 55.5 11.8 117 60-177 32-155 (726)
369 PF04841 Vps16_N: Vps16, N-ter 97.0 0.28 6.1E-06 45.2 30.6 197 42-255 62-277 (410)
370 PF08596 Lgl_C: Lethal giant l 97.0 0.18 4E-06 46.0 19.3 190 12-206 82-325 (395)
371 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.17 3.6E-06 42.4 16.6 112 155-268 20-133 (354)
372 PHA02713 hypothetical protein; 96.8 0.21 4.6E-06 48.0 19.6 206 84-299 273-532 (557)
373 PF14870 PSII_BNR: Photosynthe 96.8 0.14 2.9E-06 44.8 16.4 149 17-173 145-301 (302)
374 KOG4640 Anaphase-promoting com 96.8 0.0099 2.1E-07 55.3 9.5 72 63-135 22-95 (665)
375 PRK13616 lipoprotein LpqB; Pro 96.8 0.23 5.1E-06 47.8 19.1 136 18-161 351-512 (591)
376 KOG1897 Damage-specific DNA bi 96.7 0.76 1.7E-05 45.6 27.1 276 16-296 530-894 (1096)
377 KOG2395 Protein involved in va 96.7 0.045 9.8E-07 50.1 12.6 139 75-216 348-500 (644)
378 COG3386 Gluconolactonase [Carb 96.5 0.49 1.1E-05 41.6 22.2 206 33-243 39-270 (307)
379 PRK13616 lipoprotein LpqB; Pro 96.4 0.95 2.1E-05 43.7 20.8 161 40-208 328-517 (591)
380 PF12894 Apc4_WD40: Anaphase-p 96.2 0.014 3.1E-07 35.3 4.6 30 270-299 11-40 (47)
381 KOG2444 WD40 repeat protein [G 96.1 0.017 3.7E-07 47.2 6.1 108 76-185 33-141 (238)
382 PF02897 Peptidase_S9_N: Proly 96.0 1.2 2.6E-05 41.1 30.7 234 26-262 130-408 (414)
383 COG3386 Gluconolactonase [Carb 96.0 1 2.2E-05 39.7 23.7 212 69-286 32-271 (307)
384 PF12894 Apc4_WD40: Anaphase-p 96.0 0.042 9.1E-07 33.2 5.9 32 101-132 10-41 (47)
385 COG3204 Uncharacterized protei 95.9 1 2.2E-05 38.7 18.3 160 14-176 83-263 (316)
386 PF05096 Glu_cyclase_2: Glutam 95.8 1 2.2E-05 38.4 24.3 187 94-288 34-249 (264)
387 PRK13684 Ycf48-like protein; P 95.8 1.1 2.3E-05 40.2 16.9 149 17-175 173-330 (334)
388 COG3490 Uncharacterized protei 95.8 1.1 2.3E-05 38.4 17.6 187 23-214 120-346 (366)
389 COG5167 VID27 Protein involved 95.6 0.26 5.7E-06 45.3 11.8 141 155-299 477-631 (776)
390 PHA03098 kelch-like protein; P 95.5 1 2.3E-05 43.1 16.8 140 157-300 342-511 (534)
391 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 2.4 5.3E-05 40.5 28.0 59 208-267 441-499 (527)
392 KOG2079 Vacuolar assembly/sort 95.3 0.12 2.6E-06 51.4 9.4 98 32-131 100-202 (1206)
393 PHA03098 kelch-like protein; P 95.3 1.4 3.1E-05 42.2 16.9 107 72-182 294-420 (534)
394 PF15390 DUF4613: Domain of un 95.3 1.7 3.6E-05 41.0 16.0 151 17-178 20-188 (671)
395 COG5167 VID27 Protein involved 95.2 0.57 1.2E-05 43.1 12.6 132 41-177 490-633 (776)
396 PF12234 Rav1p_C: RAVE protein 95.1 0.94 2E-05 43.6 14.5 107 67-176 35-156 (631)
397 PF05694 SBP56: 56kDa selenium 95.0 2.7 5.9E-05 38.4 17.8 149 29-177 139-343 (461)
398 COG3823 Glutamine cyclotransfe 94.8 1.3 2.8E-05 36.1 12.2 170 113-288 55-247 (262)
399 PHA02790 Kelch-like protein; P 94.8 1.7 3.8E-05 41.0 15.5 179 72-260 271-472 (480)
400 PHA02790 Kelch-like protein; P 94.7 2.6 5.7E-05 39.8 16.6 147 30-182 271-429 (480)
401 KOG2079 Vacuolar assembly/sort 94.6 0.12 2.6E-06 51.4 7.4 71 15-90 129-202 (1206)
402 TIGR03074 PQQ_membr_DH membran 94.6 5.5 0.00012 39.9 24.7 106 32-137 195-349 (764)
403 PF10313 DUF2415: Uncharacteri 94.5 0.2 4.4E-06 29.4 5.4 33 146-178 1-35 (43)
404 PF10647 Gmad1: Lipoprotein Lp 94.5 2.8 6E-05 35.9 21.5 148 18-170 25-190 (253)
405 PF14870 PSII_BNR: Photosynthe 94.4 3.2 7E-05 36.4 20.4 158 52-213 135-301 (302)
406 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.2 5.4 0.00012 38.2 30.0 187 32-221 70-338 (527)
407 PF07995 GSDH: Glucose / Sorbo 94.2 3.9 8.4E-05 36.5 22.8 56 240-295 271-330 (331)
408 KOG2377 Uncharacterized conser 93.2 5.1 0.00011 36.7 14.1 152 21-178 27-187 (657)
409 KOG1983 Tomosyn and related SN 93.0 5.1 0.00011 41.4 15.9 69 189-262 200-268 (993)
410 KOG1916 Nuclear protein, conta 92.8 0.14 2.9E-06 50.2 4.2 71 20-91 184-265 (1283)
411 PF10168 Nup88: Nuclear pore c 92.7 12 0.00025 37.3 18.5 35 102-136 146-183 (717)
412 PF05096 Glu_cyclase_2: Glutam 92.6 5.9 0.00013 33.8 22.4 187 53-246 35-249 (264)
413 PF14761 HPS3_N: Hermansky-Pud 92.6 5 0.00011 33.0 15.7 103 75-179 30-166 (215)
414 PF07569 Hira: TUP1-like enhan 92.5 1 2.2E-05 37.5 8.7 60 157-216 21-95 (219)
415 COG3490 Uncharacterized protei 91.9 7.6 0.00016 33.4 23.8 208 85-299 93-347 (366)
416 PF11715 Nup160: Nucleoporin N 91.5 1.2 2.5E-05 42.9 9.1 38 63-100 216-257 (547)
417 PF07569 Hira: TUP1-like enhan 91.5 1.7 3.7E-05 36.2 8.8 63 69-132 18-95 (219)
418 PRK10115 protease 2; Provision 91.1 17 0.00038 36.1 24.4 190 104-298 128-342 (686)
419 KOG3616 Selective LIM binding 90.6 7.9 0.00017 37.8 13.0 65 64-130 17-81 (1636)
420 PF10313 DUF2415: Uncharacteri 90.1 1.9 4.2E-05 25.3 5.5 32 62-93 1-35 (43)
421 TIGR02276 beta_rpt_yvtn 40-res 89.9 2.3 5E-05 24.4 6.2 32 156-187 2-33 (42)
422 KOG3630 Nuclear pore complex, 89.9 1.7 3.7E-05 44.0 8.4 113 188-300 101-228 (1405)
423 PF10395 Utp8: Utp8 family; I 89.8 21 0.00045 34.9 17.5 162 61-225 129-314 (670)
424 PF15390 DUF4613: Domain of un 89.6 20 0.00043 34.2 22.8 119 14-132 54-186 (671)
425 TIGR02604 Piru_Ver_Nterm putat 89.3 17 0.00036 33.1 23.3 140 64-205 16-201 (367)
426 KOG4499 Ca2+-binding protein R 88.6 13 0.00029 31.0 19.9 52 239-290 222-275 (310)
427 KOG1898 Splicing factor 3b, su 88.3 33 0.00071 35.2 17.3 167 83-257 853-1047(1205)
428 PF08728 CRT10: CRT10; InterP 87.8 13 0.00029 36.6 12.6 104 72-175 113-245 (717)
429 KOG1897 Damage-specific DNA bi 87.7 34 0.00074 34.7 27.3 225 61-288 530-793 (1096)
430 PF14655 RAB3GAP2_N: Rab3 GTPa 87.5 16 0.00036 33.6 12.6 45 56-100 302-346 (415)
431 smart00036 CNH Domain found in 87.2 20 0.00043 31.5 28.5 232 26-267 8-279 (302)
432 PLN00033 photosystem II stabil 86.8 25 0.00055 32.3 21.2 144 65-213 242-396 (398)
433 TIGR03118 PEPCTERM_chp_1 conse 86.6 21 0.00046 31.2 25.1 216 64-280 25-307 (336)
434 TIGR02276 beta_rpt_yvtn 40-res 86.6 4.2 9E-05 23.3 5.8 39 71-109 1-40 (42)
435 PF07676 PD40: WD40-like Beta 86.3 3.8 8.3E-05 23.2 5.4 29 269-297 7-38 (39)
436 PF08728 CRT10: CRT10; InterP 86.3 37 0.0008 33.6 15.2 99 201-299 117-245 (717)
437 KOG3630 Nuclear pore complex, 85.8 7 0.00015 40.0 9.7 97 65-162 159-260 (1405)
438 PF10168 Nup88: Nuclear pore c 85.7 27 0.00059 34.8 13.9 39 13-51 143-181 (717)
439 PF14781 BBS2_N: Ciliary BBSom 85.1 14 0.00031 27.9 13.5 95 164-258 16-125 (136)
440 PF12234 Rav1p_C: RAVE protein 85.0 27 0.0006 34.0 13.2 97 31-130 41-154 (631)
441 KOG3616 Selective LIM binding 85.0 41 0.00088 33.3 13.9 97 101-203 13-113 (1636)
442 PF14583 Pectate_lyase22: Olig 85.0 30 0.00065 31.4 24.8 225 30-255 91-378 (386)
443 KOG2247 WD40 repeat-containing 84.8 0.14 3.1E-06 46.7 -1.9 141 150-294 39-182 (615)
444 PF07250 Glyoxal_oxid_N: Glyox 84.1 24 0.00052 29.9 11.1 139 43-185 48-206 (243)
445 PF05694 SBP56: 56kDa selenium 84.0 35 0.00076 31.5 22.1 190 72-261 86-345 (461)
446 PF12768 Rax2: Cortical protei 83.5 29 0.00064 30.1 13.7 88 42-130 17-121 (281)
447 KOG2377 Uncharacterized conser 82.9 34 0.00074 31.7 11.9 99 101-202 65-168 (657)
448 TIGR02604 Piru_Ver_Nterm putat 82.5 38 0.00082 30.7 16.5 98 189-289 73-202 (367)
449 PF14727 PHTB1_N: PTHB1 N-term 82.2 42 0.00091 31.1 19.0 143 157-300 36-204 (418)
450 PF07250 Glyoxal_oxid_N: Glyox 82.1 30 0.00065 29.3 12.2 138 86-224 49-205 (243)
451 KOG2280 Vacuolar assembly/sort 82.1 44 0.00096 32.9 13.0 175 121-300 61-246 (829)
452 COG3823 Glutamine cyclotransfe 82.0 27 0.00059 28.7 14.0 172 30-205 55-247 (262)
453 PRK10115 protease 2; Provision 81.9 58 0.0013 32.5 33.0 228 28-261 135-397 (686)
454 COG4590 ABC-type uncharacteriz 81.4 8.5 0.00018 35.3 7.7 163 57-221 216-391 (733)
455 PF07995 GSDH: Glucose / Sorbo 81.4 36 0.00079 30.4 12.0 104 190-293 4-136 (331)
456 PF14655 RAB3GAP2_N: Rab3 GTPa 81.1 24 0.00052 32.6 10.7 84 12-100 303-407 (415)
457 KOG1900 Nuclear pore complex, 80.9 13 0.00028 38.7 9.6 34 268-301 240-273 (1311)
458 KOG1916 Nuclear protein, conta 80.9 2.3 4.9E-05 42.2 4.3 117 12-130 220-372 (1283)
459 PF10647 Gmad1: Lipoprotein Lp 80.6 35 0.00076 29.1 21.5 141 63-205 25-183 (253)
460 PF11715 Nup160: Nucleoporin N 79.4 8.2 0.00018 37.2 7.8 73 112-184 156-256 (547)
461 KOG1898 Splicing factor 3b, su 79.3 81 0.0018 32.5 16.6 127 168-300 912-1048(1205)
462 PF12657 TFIIIC_delta: Transcr 79.2 16 0.00034 29.1 8.1 30 271-300 86-121 (173)
463 TIGR03606 non_repeat_PQQ dehyd 78.2 60 0.0013 30.4 14.1 100 190-291 32-166 (454)
464 PRK14131 N-acetylneuraminic ac 77.5 56 0.0012 29.7 18.6 15 168-182 189-203 (376)
465 PF14761 HPS3_N: Hermansky-Pud 77.4 40 0.00086 27.9 17.1 49 115-163 29-77 (215)
466 PF05935 Arylsulfotrans: Aryls 77.1 67 0.0015 30.4 16.7 116 67-185 153-310 (477)
467 KOG1983 Tomosyn and related SN 76.0 77 0.0017 33.1 13.7 28 65-92 39-66 (993)
468 KOG4460 Nuclear pore complex, 75.5 58 0.0013 30.8 11.2 29 105-133 168-199 (741)
469 PRK13684 Ycf48-like protein; P 74.8 63 0.0014 28.9 30.8 150 145-300 172-331 (334)
470 PF03088 Str_synth: Strictosid 74.7 15 0.00033 25.6 5.9 41 166-206 35-75 (89)
471 KOG1900 Nuclear pore complex, 74.6 43 0.00094 35.2 11.2 137 37-177 95-273 (1311)
472 smart00564 PQQ beta-propeller 73.9 8.6 0.00019 20.5 3.8 24 240-263 6-29 (33)
473 KOG4460 Nuclear pore complex, 73.5 79 0.0017 30.0 11.6 33 231-263 169-203 (741)
474 PF11635 Med16: Mediator compl 72.1 1.2E+02 0.0025 30.8 19.2 66 229-295 261-345 (753)
475 PF03022 MRJP: Major royal jel 71.4 70 0.0015 27.9 15.8 63 272-344 187-252 (287)
476 PF01011 PQQ: PQQ enzyme repea 71.0 12 0.00027 21.0 4.1 24 242-265 2-25 (38)
477 KOG4499 Ca2+-binding protein R 69.8 67 0.0014 27.1 15.1 143 159-302 72-243 (310)
478 PF03088 Str_synth: Strictosid 68.4 12 0.00027 26.1 4.4 45 76-120 30-74 (89)
479 COG4590 ABC-type uncharacteriz 68.2 64 0.0014 30.0 9.7 104 30-134 279-388 (733)
480 PF14269 Arylsulfotran_2: Aryl 68.1 68 0.0015 28.2 10.0 70 19-91 146-220 (299)
481 TIGR03118 PEPCTERM_chp_1 conse 68.0 85 0.0018 27.6 26.5 202 20-225 26-288 (336)
482 PF12657 TFIIIC_delta: Transcr 65.3 68 0.0015 25.5 10.7 31 146-176 86-121 (173)
483 KOG2280 Vacuolar assembly/sort 63.7 1.6E+02 0.0035 29.3 19.3 202 42-257 65-279 (829)
484 KOG2247 WD40 repeat-containing 62.1 0.95 2.1E-05 41.6 -2.7 137 107-249 39-179 (615)
485 PLN02153 epithiospecifier prot 61.3 1.2E+02 0.0026 27.0 18.2 13 169-181 102-114 (341)
486 TIGR03548 mutarot_permut cycli 60.3 1.2E+02 0.0026 26.7 21.7 52 168-219 139-197 (323)
487 TIGR03074 PQQ_membr_DH membran 60.3 2E+02 0.0043 29.2 22.0 144 159-303 262-480 (764)
488 TIGR03548 mutarot_permut cycli 59.6 1.3E+02 0.0027 26.7 20.1 68 113-182 123-200 (323)
489 KOG2109 WD40 repeat protein [G 59.0 14 0.00029 35.7 4.0 83 43-125 297-391 (788)
490 PF13570 PQQ_3: PQQ-like domai 56.6 24 0.00052 20.0 3.5 20 240-259 21-40 (40)
491 TIGR03547 muta_rot_YjhT mutatr 55.2 1.5E+02 0.0034 26.3 19.8 12 112-123 117-128 (346)
492 PLN02193 nitrile-specifier pro 54.0 2E+02 0.0043 27.2 18.6 92 168-262 294-414 (470)
493 PLN02193 nitrile-specifier pro 53.4 2E+02 0.0044 27.1 18.8 132 157-291 228-387 (470)
494 COG5290 IkappaB kinase complex 51.3 2.8E+02 0.006 28.1 14.3 100 150-250 251-359 (1243)
495 PF12768 Rax2: Cortical protei 49.1 1.8E+02 0.0039 25.3 12.6 90 168-257 16-122 (281)
496 TIGR02171 Fb_sc_TIGR02171 Fibr 48.5 2.1E+02 0.0046 29.3 10.4 79 83-161 329-414 (912)
497 PF14727 PHTB1_N: PTHB1 N-term 48.0 2.3E+02 0.0051 26.3 25.7 60 73-132 145-204 (418)
498 TIGR03606 non_repeat_PQQ dehyd 47.7 2.5E+02 0.0053 26.5 13.6 52 63-114 31-90 (454)
499 KOG2063 Vacuolar assembly/sort 46.4 3.5E+02 0.0076 27.9 17.7 64 31-95 26-100 (877)
500 PF01436 NHL: NHL repeat; Int 46.1 43 0.00093 17.3 3.8 23 106-128 5-27 (28)
No 1
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.7e-61 Score=380.95 Aligned_cols=329 Identities=65% Similarity=1.073 Sum_probs=303.6
Q ss_pred cccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeE
Q 018860 6 IAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSA 85 (349)
Q Consensus 6 ~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 85 (349)
...|++++||+.||.+++|||+.|+|-+|+|++.|+.--+.+.++|.|+.+|+||++.||..+++.+..+.+|++.|-+-
T Consensus 4 ~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadfta 83 (334)
T KOG0278|consen 4 RQTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTA 83 (334)
T ss_pred ccCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEee
Q 018860 86 KVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCT 165 (349)
Q Consensus 86 ~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 165 (349)
||||.-+|..++.|+|+..|++++|+.|.++|++|+.++.+|+||++.++.+..++.+|++.|+.+.|++.+..+|++ .
T Consensus 84 kvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS-a 162 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS-A 162 (334)
T ss_pred hhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988876 7
Q ss_pred CCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEE
Q 018860 166 DMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVA 245 (349)
Q Consensus 166 ~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
+|++||+||.++++.++++..+.+++++.++++|++|+.+..+.|++||..++.+++.+.+|+.+.+..++|.. ..|++
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k-~~fVa 241 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK-EFFVA 241 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC-ceEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999974 88999
Q ss_pred ecCCCeEEEEeCCCCcEEEEe-cCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCCCCCcceeeeccCeeeeeEeChh
Q 018860 246 GGEDMWVRFFDFHTGNEIACN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTNDDTETLTANGTIGKVKVTAD 324 (349)
Q Consensus 246 ~~~d~~i~v~d~~~~~~~~~~-~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (349)
|+.|..++.||..+++.+..+ ++|.++|.|+.|+|+|...|+||+||+|+||.+.+.+...... .....-..+
T Consensus 242 Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~~~------~~~~ed~~e 315 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGLWK------CVKPEDDGE 315 (334)
T ss_pred cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchhhcc------ccChhhhcc
Confidence 999999999999999998885 8999999999999999999999999999999987654332111 012223456
Q ss_pred hhhccccceeecccccch
Q 018860 325 EVSRKIEGFHIADEGKMK 342 (349)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ 342 (349)
++++..+|+++..++++.
T Consensus 316 ev~s~~e~~~~~~e~~~~ 333 (334)
T KOG0278|consen 316 EVASPKEGFPITTEEELA 333 (334)
T ss_pred cccccccccccCchhhhc
Confidence 788888999988877654
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-49 Score=333.65 Aligned_cols=281 Identities=23% Similarity=0.337 Sum_probs=254.3
Q ss_pred ccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCC--CCeeEEeeCCCeEEEEEC
Q 018860 13 HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTN--ALRAASASADFSAKVWDA 90 (349)
Q Consensus 13 ~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~D~~i~vWd~ 90 (349)
-|.+.||..+.||+ |+..|++||.+|..++|...+.+.+.+|+||+..|.++.|+|. +..+|||+.||++|+|++
T Consensus 172 ~gd~rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred ccCCCcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 37889999999997 8999999999999999999999999999999999999999997 668999999999999999
Q ss_pred CCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 018860 91 LTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG 169 (349)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 169 (349)
.+...+..+. |...|..++|+|+|++|+|++.|.+.|+||+.+... .....+|...|.+++|. +++.++++|+-|..
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~-~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQ-PDGSLAATGGLDSL 326 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEec-CCCceeeccCccch
Confidence 9877777775 788999999999999999999999999999986543 34557899999999986 46778889999999
Q ss_pred EEEEECCCCceEEeecCC-CCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEEcCCC-ceEEeeecCCCCCEEEEe
Q 018860 170 VRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSYNMPC-TIESASLEPKYGNKFVAG 246 (349)
Q Consensus 170 v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 246 (349)
-||||+|+|+++..+..+ .+|..+.|+|+|..+++ +.|++++|||++..+++..+..+. -+..+.|.|..+.+|+++
T Consensus 327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred hheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 999999999999999865 47999999999988866 569999999999988877665543 467789998779999999
Q ss_pred cCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 247 GEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 247 ~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
+.|+++++|...+..+++.+.||++.|.+++++|++++++|+|.|+++|+|.
T Consensus 407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-49 Score=329.44 Aligned_cols=283 Identities=24% Similarity=0.391 Sum_probs=245.7
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECC
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDAL 91 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~ 91 (349)
+.||.++|.|+.|+| +|.+|++||-|.++|+||+.+..+..+.+||...|.|++|+||++.||||+.||+|++||.+
T Consensus 111 ~~GH~e~Vl~~~fsp---~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSP---TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cCCCCCcEEEEEecC---CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 369999999999998 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEE-Ee-ccCCeEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEe
Q 018860 92 TGDVLH-SF-EHKHIVRACSFSE-----DTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 92 ~~~~~~-~~-~~~~~v~~~~~s~-----~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 164 (349)
+|+.+- .+ .|...|++++|.| ...+|++++.|+.+++||+.. ......+.+|..+|+++.|- ++-++.++
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-~~~~~~lsgHT~~VTCvrwG--G~gliySg 264 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-GTCVRTLSGHTASVTCVRWG--GEGLIYSG 264 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-ceEEEEeccCccceEEEEEc--CCceEEec
Confidence 987654 34 4899999999975 567999999999999999864 34467788999999999994 55688899
Q ss_pred eCCCeEEEEECCCCceEEeecCC-CCeeEEEEc-----------CCC--------------------------cEEEEec
Q 018860 165 TDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVS-----------QDG--------------------------RYITTAD 206 (349)
Q Consensus 165 ~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~-----------~~~--------------------------~~l~~~~ 206 (349)
+.|++|++|+...|++...+.++ ..|+.++++ |.+ +++++++
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 99999999999999988888764 467777655 212 2566778
Q ss_pred CCeEEEEecCCce-eeEE-EcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCe
Q 018860 207 GSTVKFWDANHFG-LVKS-YNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGES 284 (349)
Q Consensus 207 d~~i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~ 284 (349)
|.++.+|+....+ ++.. ..+...+..+.|+|+ ++++++++.|..|++||.++|+.+..++||-++|+.++|+.|.++
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd-~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD-GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCC-ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 9999999986543 3322 233445788899984 899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEecCCC
Q 018860 285 YASGSEDGTIRIWQTGP 301 (349)
Q Consensus 285 l~sgs~Dg~v~vW~~~~ 301 (349)
|+|||.|.++|+|++..
T Consensus 424 lVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRT 440 (480)
T ss_pred EEEcCCCceEEEEEeee
Confidence 99999999999999864
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-46 Score=313.10 Aligned_cols=284 Identities=25% Similarity=0.409 Sum_probs=246.8
Q ss_pred ceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCe-EEEeecccCCeEEEEEC-----CCCCeeEEeeCC
Q 018860 9 PLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLD-----TNALRAASASAD 82 (349)
Q Consensus 9 ~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~-----~~~~~l~s~s~D 82 (349)
..++.||..=|.||+||| ||+.||||+.||+|++||+.+++. .+.|+||+..|++++|. |.+++|||+|.|
T Consensus 150 ~~t~KgH~~WVlcvawsP---Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skD 226 (480)
T KOG0271|consen 150 LFTCKGHKNWVLCVAWSP---DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKD 226 (480)
T ss_pred ceeecCCccEEEEEEECC---CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCC
Confidence 456789999999999997 999999999999999999998875 58999999999999995 567899999999
Q ss_pred CeEEEEECCCCCEEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEe-------
Q 018860 83 FSAKVWDALTGDVLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWL------- 154 (349)
Q Consensus 83 ~~i~vWd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~------- 154 (349)
|+|||||+..+.++..+ .|..+|+|+.|-.+| +|++|+.|++|++|+... ....+++.+|...|+.++.+
T Consensus 227 g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d-G~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 227 GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD-GKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred CCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccc-hhHHHhhcccchheeeeeccchhhhhc
Confidence 99999999999988876 599999999998665 799999999999999765 44567888888888887754
Q ss_pred ----cCCC------------------------eEEEEeeCCCeEEEEECCC-CceEEeec-CCCCeeEEEEcCCCcEEEE
Q 018860 155 ----HSDQ------------------------TILSTCTDMGGVRLWDVRS-GEIVQTLE-TKSPVTSAEVSQDGRYITT 204 (349)
Q Consensus 155 ----~~~~------------------------~~l~~~~~dg~v~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~ 204 (349)
|.+. ..+++|+||.++.+|+... .+++..+. |...|+.+.|+||++++++
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence 2222 2578999999999999854 44555554 4457999999999999876
Q ss_pred e-cCCeEEEEecCCceeeEEEc-CCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCC
Q 018860 205 A-DGSTVKFWDANHFGLVKSYN-MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGG 282 (349)
Q Consensus 205 ~-~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~ 282 (349)
+ .|..|++||.++++.+.++. +-..+..++|+. +.+++++|+.|.++++|++++.+....+.||.+.|.++.|+|||
T Consensus 385 aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred eecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC
Confidence 5 59999999999999988887 445678889986 47899999999999999999999999999999999999999999
Q ss_pred CeEEEecCCCCEEEec
Q 018860 283 ESYASGSEDGTIRIWQ 298 (349)
Q Consensus 283 ~~l~sgs~Dg~v~vW~ 298 (349)
..+++|+.|+.+++|.
T Consensus 464 ~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 464 QRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeecCCCceEEEeec
Confidence 9999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.2e-45 Score=295.16 Aligned_cols=286 Identities=24% Similarity=0.388 Sum_probs=256.4
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEE
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAK 86 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 86 (349)
....+|+||-+.|+++.|++ |+++|+|+|.||.+.|||.-+...++-++..+.+|+.++|+|+++++|.||.|....
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeEEEecccccceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 45578999999999999997 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCC--C----EEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCe
Q 018860 87 VWDALTG--D----VLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQT 159 (349)
Q Consensus 87 vWd~~~~--~----~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (349)
||++.+. + ..+.+ .|...+.++.|-+| ..|+|++.|.++.+||+.+.+. ...+.+|.+.|.++.+.|.+.+
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~-~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ-TQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-EEEecCCcccEEEEecCCCCCC
Confidence 9999855 2 22333 48999999999985 5688999999999999987543 5678899999999999987888
Q ss_pred EEEEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCCcEEE-EecCCeEEEEecCCceeeEEEcCC---CceEEee
Q 018860 160 ILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYIT-TADGSTVKFWDANHFGLVKSYNMP---CTIESAS 234 (349)
Q Consensus 160 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~ 234 (349)
.+++|+-|+..++||+|.+.++++++.+ +.|++++|.|+|.-++ +++|++.++||+|..+.+..|..+ +.+.+++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA 280 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE
Confidence 8888988999999999999999999864 6899999999997654 567899999999998888887654 4678899
Q ss_pred ecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 235 LEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 235 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
|+.. +++|++|..|..+.+||.-.++.+..+.+|.+.|.++..+|||..++|||.|.++|||.
T Consensus 281 FS~S-GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 281 FSKS-GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred Eccc-ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9864 99999999999999999999999999999999999999999999999999999999994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-43 Score=284.78 Aligned_cols=291 Identities=20% Similarity=0.295 Sum_probs=248.3
Q ss_pred ccccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCC-----CCCeEEEeecccCCeEEEEECCCCCeeEEe
Q 018860 5 KIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGE-----TGDWIGTFEGHKGAVWSCCLDTNALRAASA 79 (349)
Q Consensus 5 ~~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 79 (349)
.+...-++.||.+.|..++-.+. +...++++|+|.++.+|+.. .|..++.|+||+..|..+..++|+++.+|+
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~--~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIK--NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred hheeeeeecCCCceEEEEEeecC--CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec
Confidence 45667788999999999998875 34589999999999999754 356789999999999999999999999999
Q ss_pred eCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceecc-CCCCeEEEEEecCC
Q 018860 80 SADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDR-SPGSVRTVAWLHSD 157 (349)
Q Consensus 80 s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~ 157 (349)
|.|+++|+||+.+|+..+.|. |..-|.+++|++|..+|+||+.|++|++|++..... ...... +.+-|.++.|+|..
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCC
Confidence 999999999999998877764 999999999999999999999999999999754321 111222 26779999999974
Q ss_pred -CeEEEEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCCCceEEee
Q 018860 158 -QTILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESAS 234 (349)
Q Consensus 158 -~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 234 (349)
..++++++.|++|++||+++.+..+.+..+ ..++.+.++|||.+++.+ .|+.+.+||++..+.+..+.+...+.+++
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~ 240 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLC 240 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEE
Confidence 667788889999999999998888877654 578999999999998765 59999999999999999999988999999
Q ss_pred ecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecC---------CCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 235 LEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKG---------HHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 235 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~---------h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
|.| +++.++++.+..|++||+.++..+..++- ..-...+++||++|..|.+|-.|+.|++|.+.
T Consensus 241 fsp--nrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 241 FSP--NRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ecC--CceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 998 57888888888899999999887765531 12345778999999999999999999999764
No 7
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-41 Score=282.02 Aligned_cols=287 Identities=25% Similarity=0.349 Sum_probs=240.9
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC---CCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKV 87 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~v 87 (349)
++..|++.|.-+.||| +|+||||||+|.++.||.... .+..+++.||..+|.-+.|+||.++|++|+.|..+++
T Consensus 219 il~~htdEVWfl~FS~---nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSH---NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hHhhCCCcEEEEEEcC---CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 4578999999999997 999999999999999996432 3568899999999999999999999999999999999
Q ss_pred EECCCCCEEEEeccC--CeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEee
Q 018860 88 WDALTGDVLHSFEHK--HIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCT 165 (349)
Q Consensus 88 Wd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 165 (349)
||+.+|++.+.+.+. ..+.+++|.|||..+++|+.|++|..||++........-.. ...+..++..+++..+++.+.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc-cceeEEEEEcCCCcEEEEEec
Confidence 999999999998865 68999999999999999999999999999754321111111 135778888877777776664
Q ss_pred CCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCCC---ceEEeeecCCCCC
Q 018860 166 DMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPC---TIESASLEPKYGN 241 (349)
Q Consensus 166 ~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 241 (349)
|..|++++..+......+..+.++++..++.+++++... .+..+.+||+.....++.+.... -+...+|-..+..
T Consensus 375 -d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 375 -DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred -ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 589999998877666666777899999999999998776 58999999999777766654332 2344566655567
Q ss_pred EEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCC-eEEEecCCCCEEEecCCCC
Q 018860 242 KFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGE-SYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 242 ~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~sgs~Dg~v~vW~~~~~ 302 (349)
++++|++|+.|++|+..+++.+.++.||...|++++|+|..+ ++||+|.||+||||.+++.
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 899999999999999999999999999999999999999765 6899999999999977643
No 8
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-40 Score=262.57 Aligned_cols=288 Identities=30% Similarity=0.594 Sum_probs=242.2
Q ss_pred ceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEE
Q 018860 9 PLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVW 88 (349)
Q Consensus 9 ~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vW 88 (349)
|+.+-||..|++-|.|+- +|.+|.|++.|.++.+|-..+|+-+.+++||++.|||+.++.+.+.++||+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~---eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNR---EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecC---CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 678899999999999985 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCC------CCCceeccCCCCeEEEEEecCC
Q 018860 89 DALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGM-----EKILRIFDLNRPD------APPREVDRSPGSVRTVAWLHSD 157 (349)
Q Consensus 89 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----d~~i~lwd~~~~~------~~~~~~~~~~~~i~~~~~~~~~ 157 (349)
|+++|+++..++.+.+|+.+.|+++|++++.+.. .+.|.++|++... .+...+..+...++.+.|.|.+
T Consensus 80 Dv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 80 DVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred EcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 9999999999999999999999999998887653 4678999987432 2344556667889999999877
Q ss_pred CeEEEEeeCCCeEEEEECCCCceEE-ee-cCCCCeeEEEEcCCCcEE-EEecCCeEEEEecCCceeeEEEcCCCceEEee
Q 018860 158 QTILSTCTDMGGVRLWDVRSGEIVQ-TL-ETKSPVTSAEVSQDGRYI-TTADGSTVKFWDANHFGLVKSYNMPCTIESAS 234 (349)
Q Consensus 158 ~~~l~~~~~dg~v~vwd~~~~~~~~-~~-~~~~~v~~~~~~~~~~~l-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 234 (349)
+.++ +|.++|.|.+||.++|+.+. .. .+...++.++++++..++ +++.|.+-++||.++..+++++....++.+.+
T Consensus 160 ~~ii-~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 160 ETII-AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred CEEE-EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence 7665 67777999999999986543 32 345689999999998765 55679999999999999999999999999999
Q ss_pred ecCCCCCEEEEecCCCe-E------------EEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 235 LEPKYGNKFVAGGEDMW-V------------RFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 235 ~~~~~~~~~~~~~~d~~-i------------~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
++|..+..++-|+.+.. | |.|++-..+++..+++|-++|++++|+|+|+..+||++||.|++.-.+
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 99976555555555432 2 222222234455678999999999999999999999999999998654
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8e-39 Score=253.88 Aligned_cols=268 Identities=21% Similarity=0.301 Sum_probs=225.2
Q ss_pred ccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCC--EEEEec-cCCeEEE
Q 018860 31 GFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGD--VLHSFE-HKHIVRA 107 (349)
Q Consensus 31 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~--~~~~~~-~~~~v~~ 107 (349)
.-+|+|+|.|.+||+|...+|.+.++++.....|..+.+.|+++.||+++.. .||+||++++. ++.+|+ |.+.|.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEE
Confidence 4589999999999999999999999999888999999999999999988865 69999998875 577776 7789999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC-
Q 018860 108 CSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET- 186 (349)
Q Consensus 108 ~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~- 186 (349)
+.|..+|+.+++||.||++|+||++.... .+.++ ++.+|+++..+|....+| +|..+|.|++||++...+.+.+..
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~-qR~~~-~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSC-QRNYQ-HNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCccc-chhcc-CCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCC
Confidence 99999999999999999999999987433 34443 568899998776665555 677779999999998877665533
Q ss_pred -CCCeeEEEEcCCCcEEEEec-CCeEEEEecCCc------eeeEEEcCC-CceEEeeecCCCCCEEEEecCCCeEEEEeC
Q 018860 187 -KSPVTSAEVSQDGRYITTAD-GSTVKFWDANHF------GLVKSYNMP-CTIESASLEPKYGNKFVAGGEDMWVRFFDF 257 (349)
Q Consensus 187 -~~~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~ 257 (349)
..++.++.+.|||..+++.. .|...+|++-.. .++.+++.. ..+..+.++| +.++|++++.|.++++|+.
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEec
Confidence 45789999999999998876 589999998542 344445443 3466777787 4899999999999999999
Q ss_pred CCC-cEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCCC
Q 018860 258 HTG-NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVT 303 (349)
Q Consensus 258 ~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~ 303 (349)
.+. +.-..+++|..+++.++||.++.||++||.|+++++|++....
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 887 4455678999999999999999999999999999999986553
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.4e-41 Score=283.36 Aligned_cols=279 Identities=23% Similarity=0.377 Sum_probs=239.1
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEE
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVL 96 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~ 96 (349)
-+|..|.|.| +|+.|++|++.|...+|+..+..+...++.|..+|+++.|++++.+++||+.+|.||+|+.+-.-..
T Consensus 97 c~V~~v~WtP---eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 97 CPVNVVRWTP---EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred cceeeEEEcC---CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence 4788999987 9999999999999999998665555566889999999999999999999999999999997644333
Q ss_pred EEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 018860 97 HSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDV 175 (349)
Q Consensus 97 ~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~ 175 (349)
.... |...|++++|+|....+++++.|++|++||...++. .+.+.+|.-.++++.|+|..+ +++++++|+.|++||.
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDP 251 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccc-eeEEccCCceeEeecC
Confidence 3333 448999999999999999999999999999876554 355688888999999987654 6667888899999999
Q ss_pred CCCceEEeec-CCCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEEc-CCCceEEeeecCCCCCEEEEecCCCeE
Q 018860 176 RSGEIVQTLE-TKSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSYN-MPCTIESASLEPKYGNKFVAGGEDMWV 252 (349)
Q Consensus 176 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i 252 (349)
+++.++.++. +++.|..+.|++++.+|.+ +.|..++++|+++.+.+..+. +...+.++.|+|-...+|.+|+.||.|
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 9999998886 4678999999999998765 569999999999877777666 455678899999988999999999999
Q ss_pred EEEeCCCCcEEEEe-cCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 253 RFFDFHTGNEIACN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 253 ~v~d~~~~~~~~~~-~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
..|.+...+.+..+ .+|...|++|+|+|-|..|++||.|.++++|.-.
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999855555443 5899999999999999999999999999999754
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8e-41 Score=282.97 Aligned_cols=246 Identities=21% Similarity=0.302 Sum_probs=217.7
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEE
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAK 86 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 86 (349)
....+|+||...|.++.|+|.. ++..||||+.||++++|+..+-.++..+.||...|..++|+|+|++|+|++.|.+-|
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR 286 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR 286 (459)
T ss_pred ceeEEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchh
Confidence 4556789999999999999964 356899999999999999998899999999999999999999999999999999999
Q ss_pred EEECCCCCEEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEee
Q 018860 87 VWDALTGDVLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCT 165 (349)
Q Consensus 87 vWd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 165 (349)
+||+.++..+... .|...|.+++|+|||.+++|||.|..-|+||+++... .-.+.+|.++|.++.|+| +++.++||+
T Consensus 287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~-im~L~gH~k~I~~V~fsP-NGy~lATgs 364 (459)
T KOG0272|consen 287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC-IMFLAGHIKEILSVAFSP-NGYHLATGS 364 (459)
T ss_pred hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE-EEEecccccceeeEeECC-CceEEeecC
Confidence 9999998765544 5999999999999999999999999999999987654 456788999999999986 567888999
Q ss_pred CCCeEEEEECCCCceEEeecCC-CCeeEEEEcC-CCcEEEE-ecCCeEEEEecCCceeeEEEcC-CCceEEeeecCCCCC
Q 018860 166 DMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQ-DGRYITT-ADGSTVKFWDANHFGLVKSYNM-PCTIESASLEPKYGN 241 (349)
Q Consensus 166 ~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~-~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 241 (349)
.|++++|||+|..+.+.+++.+ +.|+.++|+| .|++|++ +.|+++++|...++.+++++.. ...+.++.+.++ ++
T Consensus 365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d-~~ 443 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPD-SQ 443 (459)
T ss_pred CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccC-Cc
Confidence 9999999999999988888765 5789999998 5677655 5699999999999999988754 567888998884 89
Q ss_pred EEEEecCCCeEEEEe
Q 018860 242 KFVAGGEDMWVRFFD 256 (349)
Q Consensus 242 ~~~~~~~d~~i~v~d 256 (349)
.+++++.|+++++|.
T Consensus 444 ~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 AIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEeccCceeeecc
Confidence 999999999999995
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.5e-39 Score=259.74 Aligned_cols=283 Identities=24% Similarity=0.387 Sum_probs=234.7
Q ss_pred cccee-eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEe-CCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCe
Q 018860 7 AVPLV-CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRN-GETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFS 84 (349)
Q Consensus 7 ~~~~~-~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 84 (349)
..|+. +.||++.|+.+.|+| +|.++|||+.|..|.+|+ ...-+-...++||+++|+.+.|.+|+..|+|+|.|++
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P---~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHP---DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred cchhhhcCCCcceEEEEEECC---CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCce
Confidence 34443 359999999999998 899999999999999998 3333446678899999999999999999999999999
Q ss_pred EEEEECCCCCEEEEec-cCCeEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEE
Q 018860 85 AKVWDALTGDVLHSFE-HKHIVRACSFSEDT-HLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILS 162 (349)
Q Consensus 85 i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 162 (349)
|+.||+++|++.+.++ |...|+++.-+.-| .++.|++.|+++|+||+++.... +. ...+-+++++.|.....+.+.
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~-~t-~~~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI-KT-FENKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh-hc-cccceeEEEEEecccccceee
Confidence 9999999999988876 88889988844434 46678889999999999854322 11 223456899999877777775
Q ss_pred EeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCCcEEEE-ecCCeEEEEecCCc----eeeEEEcC-----CCceE
Q 018860 163 TCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYITT-ADGSTVKFWDANHF----GLVKSYNM-----PCTIE 231 (349)
Q Consensus 163 ~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~----~~~~~~~~-----~~~~~ 231 (349)
|+=|+.|++||+|.+...+++.++ .+|+.+..+++|.++.+ +.|.++++||.+.+ +++..+.. .....
T Consensus 192 -ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 192 -GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred -ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 555699999999999999998865 58999999999988766 56999999999864 33444432 23456
Q ss_pred EeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEE
Q 018860 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRI 296 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~v 296 (349)
.++|+|. ++.+.+|+.|+.+++||..+...+..+.||.+.|.+++|+|..++|.+++.|++|.+
T Consensus 271 ~cswsp~-~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 271 KCSWSPN-GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eeeccCC-CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 7788884 788889999999999999999999999999999999999999999999999999886
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-39 Score=270.29 Aligned_cols=281 Identities=22% Similarity=0.366 Sum_probs=244.9
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECC
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDAL 91 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~ 91 (349)
+.||..+|+.+.|.| +-..++++|.|++|++||..++++.+.++||.+.|..++|+..|++|+|||.|-.+++||..
T Consensus 104 l~g~r~~vt~v~~hp---~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHP---SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhccccceeeeeecc---CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 358999999999997 67789999999999999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEE-eccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 018860 92 T-GDVLHS-FEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG 169 (349)
Q Consensus 92 ~-~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 169 (349)
+ .++++. ..|...|.+++|-|.|.+|+|++.|.+|+.|++.+.- ....+.+|..-+..+... .++.++++|+.|.+
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~-~DGti~As~s~dqt 258 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVN-QDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEec-CCeeEEEecCCCce
Confidence 6 334433 4588899999999999999999999999999998743 456778888888888754 68899999999999
Q ss_pred EEEEECCCCceEEeec-CCCCeeEEEEcCC---------------CcEEE-EecCCeEEEEecCCceeeEEEc-CCCceE
Q 018860 170 VRLWDVRSGEIVQTLE-TKSPVTSAEVSQD---------------GRYIT-TADGSTVKFWDANHFGLVKSYN-MPCTIE 231 (349)
Q Consensus 170 v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~---------------~~~l~-~~~d~~i~iwd~~~~~~~~~~~-~~~~~~ 231 (349)
|++|-+.++++...+. +..++.+++|.|. +.++. ++.|++|++||+.++.++-++. +..-+.
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 9999999997766664 3457778877542 23554 4569999999999998876664 445578
Q ss_pred EeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
.++|+|. |++++++.+|+++++||+.++++...+..|..-+++++|+.+..+++|||-|.++++|.
T Consensus 339 ~~af~p~-Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 339 GVAFSPG-GKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeEEcCC-CeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 8999985 99999999999999999999999999999999999999999999999999999999995
No 14
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.3e-40 Score=282.89 Aligned_cols=283 Identities=23% Similarity=0.392 Sum_probs=242.2
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC-CCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWD 89 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd 89 (349)
.++||.+.|+++.|.|. .+++|+|++.|+.|++|+.-. +.++++|.||+.+|..++|+.+|..++|+|.|+.||+||
T Consensus 209 ~~~gH~kgvsai~~fp~--~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPK--KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred eccCCccccchhhhccc--eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 45899999999999984 688999999999999998654 889999999999999999999999999999999999999
Q ss_pred CCCCCEEEEeccCCeEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 018860 90 ALTGDVLHSFEHKHIVRACSFSEDT-HLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMG 168 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 168 (349)
.++|+++..|.....++++.|+|++ +.+++|+.|+.|+.||++.++ ...++..|-+.|.++.|.+.+.+++ ++++|+
T Consensus 287 tETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFi-ssSDdk 364 (503)
T KOG0282|consen 287 TETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFI-SSSDDK 364 (503)
T ss_pred cccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEe-eeccCc
Confidence 9999999999988899999999998 889999999999999998765 3556778889999999997766655 667779
Q ss_pred eEEEEECCCCceEEeecC--CCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCce------eeEEEcCCCceEEeeecCCC
Q 018860 169 GVRLWDVRSGEIVQTLET--KSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFG------LVKSYNMPCTIESASLEPKY 239 (349)
Q Consensus 169 ~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~ 239 (349)
+++||+.+.+-.++.+.. .....++..+|++.++++. .|..|.++.+...- ...-+..+...+.+.|+| +
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-D 443 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-D 443 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC-C
Confidence 999999988766544322 2345678899999999885 58899999865321 112223334456788888 4
Q ss_pred CCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCC-CeEEEecCCCCEEEec
Q 018860 240 GNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIWQ 298 (349)
Q Consensus 240 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~sgs~Dg~v~vW~ 298 (349)
+++|++|..||.+.+||.++-+.+..+++|++++..+.|+|.. ..+||++.||.|++|+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999999999999975 4689999999999996
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-38 Score=255.41 Aligned_cols=241 Identities=25% Similarity=0.368 Sum_probs=210.3
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEEC
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDA 90 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~ 90 (349)
-|.||...|..++.++ ||++.+|+|.|+++++||.++++..+.|.||...|.+++|++|...|+|||.|++|++||.
T Consensus 58 ~~~GHsH~v~dv~~s~---dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSS---DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT 134 (315)
T ss_pred eeeccceEecceEEcc---CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence 4679999999999886 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCEEEEec---cCCeEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEee
Q 018860 91 LTGDVLHSFE---HKHIVRACSFSED--THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCT 165 (349)
Q Consensus 91 ~~~~~~~~~~---~~~~v~~~~~s~~--~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 165 (349)
.+ ++..++. +.+.|.++.|+|. .-+|+++|+|+++++||+++.+. ...+.+|.+.++.++++| |+.+.++|+
T Consensus 135 ~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSp-DGslcasGg 211 (315)
T KOG0279|consen 135 LG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSP-DGSLCASGG 211 (315)
T ss_pred cc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-hhccccccccEEEEEECC-CCCEEecCC
Confidence 64 4555543 3678999999997 67899999999999999986543 456788999999999886 566777899
Q ss_pred CCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCC----------CceEEeee
Q 018860 166 DMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMP----------CTIESASL 235 (349)
Q Consensus 166 ~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~ 235 (349)
.||.+.+||++.++.+..+++...|.+++|+|+..+|.++.+..|+|||+.+..++..+... ....+++|
T Consensus 212 kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaw 291 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAW 291 (315)
T ss_pred CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEE
Confidence 99999999999999999999999999999999999998888888999999988776554321 22346777
Q ss_pred cCCCCCEEEEecCCCeEEEEeCC
Q 018860 236 EPKYGNKFVAGGEDMWVRFFDFH 258 (349)
Q Consensus 236 ~~~~~~~~~~~~~d~~i~v~d~~ 258 (349)
++ ++..|++|-.|+.|++|.+.
T Consensus 292 s~-dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 292 SA-DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cC-CCcEEEeeecCCcEEEEEee
Confidence 76 59999999999999999864
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-38 Score=264.13 Aligned_cols=283 Identities=22% Similarity=0.359 Sum_probs=244.6
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEEC
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDA 90 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~ 90 (349)
++.||-+=|.||++.| .++.+++||.|++|+|||++++.+..++.||...|..+++++...|+++++.|+.||-||+
T Consensus 146 Vi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 4579999999999998 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 018860 91 LTGDVLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG 169 (349)
Q Consensus 91 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 169 (349)
+..+.++.+ .|-..|++++.+|.-..|++|+.|.++|+||+++. .....+.+|..+|.++.+.|-+++++ +|+.|++
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~~dpqvi-t~S~D~t 300 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQPTDPQVI-TGSHDST 300 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEeecCCCceE-EecCCce
Confidence 998887765 47889999999999999999999999999999864 34667889999999999988888877 6777899
Q ss_pred EEEEECCCCceEEeecC-CCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcC-CCceEEeeecCCCCCEEEEec
Q 018860 170 VRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNM-PCTIESASLEPKYGNKFVAGG 247 (349)
Q Consensus 170 v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 247 (349)
|++||++.|+-..++.+ +..+.+++.+|....++++.-..|+-|++..+..+..+.. ...+.++.... +..+++|+
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~ns--D~v~~~G~ 378 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNS--DGVLVSGG 378 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeecc--CceEEEcC
Confidence 99999999998887765 4579999999988777777777899999988776655433 33455566553 67899999
Q ss_pred CCCeEEEEeCCCCcEEEEec--------CCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 248 EDMWVRFFDFHTGNEIACNK--------GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 248 ~d~~i~v~d~~~~~~~~~~~--------~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
++|.+..||.+++...+... ..+..|++.+|...+..|+||..|++|++|.-+
T Consensus 379 dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 379 DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 99999999999987655431 234679999999999999999999999999754
No 17
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-37 Score=259.36 Aligned_cols=287 Identities=16% Similarity=0.232 Sum_probs=245.5
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEE
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAK 86 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 86 (349)
++...|.+|+++|.+|..+| +.+.+++|+-|....+|+..+++++..+.||++.|.++.|+.++.+||||+.+|.|+
T Consensus 55 dS~~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred cceeehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEE
Confidence 45667899999999999887 678999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEee
Q 018860 87 VWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCT 165 (349)
Q Consensus 87 vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 165 (349)
||...++.....+. .-.-+.-+.|||-+..|+.|+.||.+=+|.+... ...+.+.+|..++++=.|.|+ ++.++++.
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pd-GKr~~tgy 209 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPD-GKRILTGY 209 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCC-CceEEEEe
Confidence 99999998877765 3456778999999999999999999999999764 345678889999999999987 55566888
Q ss_pred CCCeEEEEECCCCceEEeecCC----CC-------------------e-----------------------------eEE
Q 018860 166 DMGGVRLWDVRSGEIVQTLETK----SP-------------------V-----------------------------TSA 193 (349)
Q Consensus 166 ~dg~v~vwd~~~~~~~~~~~~~----~~-------------------v-----------------------------~~~ 193 (349)
+||+|++||+.++.+++.+... .+ + .++
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv 289 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESV 289 (399)
T ss_pred cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhh
Confidence 8999999999999887766410 00 0 000
Q ss_pred EEcCCC---cEEEEe-cCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCC
Q 018860 194 EVSQDG---RYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGH 269 (349)
Q Consensus 194 ~~~~~~---~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h 269 (349)
.+.|.. .+.+++ -||+|.|||+.+.++++...++..+..+.|.+ ..++++++.||.||.||.++|+++.++.||
T Consensus 290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH 367 (399)
T KOG0296|consen 290 ESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGH 367 (399)
T ss_pred hhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecC
Confidence 011111 123443 48999999999999999999999999999987 578999999999999999999999999999
Q ss_pred CcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 270 ~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
+..|.+++++|+.++++|+|.|++.+|+.++
T Consensus 368 ~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 368 QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999864
No 18
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-38 Score=246.56 Aligned_cols=279 Identities=23% Similarity=0.351 Sum_probs=236.3
Q ss_pred eeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEE
Q 018860 10 LVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWD 89 (349)
Q Consensus 10 ~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd 89 (349)
-++.+|+++|+++.|+- ||+|.+++++|.++++|++..+.+++++.||...|..++.+.|...+++|+.|+.|.+||
T Consensus 11 ~~l~~~qgaV~avryN~---dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNV---DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred eeecccccceEEEEEcc---CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 35689999999999985 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-CCCceeccCCCCeEEEEEecCCCeEEEEeeCC
Q 018860 90 ALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPD-APPREVDRSPGSVRTVAWLHSDQTILSTCTDM 167 (349)
Q Consensus 90 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 167 (349)
+++|+..+.+. |...|+.++|+.+...+++|+.|.++|+||.+... .+...+......|.++... +..+++|+-|
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~D 164 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVD 164 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccC
Confidence 99999999886 88999999999999999999999999999997543 3445566667788888754 3557788888
Q ss_pred CeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEE-EEecCCeEEEEecCCceeeEEEcCCCc---eEEeeecCCCCCEE
Q 018860 168 GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYI-TTADGSTVKFWDANHFGLVKSYNMPCT---IESASLEPKYGNKF 243 (349)
Q Consensus 168 g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 243 (349)
|++|.||+|.|+.....- ..|++++.|+++++.. +++.|+++++.|-.+++++..+..... -...++... ..++
T Consensus 165 GtvRtydiR~G~l~sDy~-g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs-dthV 242 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS-DTHV 242 (307)
T ss_pred CcEEEEEeecceeehhhc-CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc-ceeE
Confidence 999999999998654433 4589999999999875 456699999999999888877644322 223445543 6789
Q ss_pred EEecCCCeEEEEeCCCCcEEEEecCCCcc-eeEEEEccCCCeEEEecCCCCEEEe
Q 018860 244 VAGGEDMWVRFFDFHTGNEIACNKGHHGP-VHCVRFSPGGESYASGSEDGTIRIW 297 (349)
Q Consensus 244 ~~~~~d~~i~v~d~~~~~~~~~~~~h~~~-i~~l~~sp~~~~l~sgs~Dg~v~vW 297 (349)
++|++||.+++||+.....+..+..|... |.+++++|....|+++. ++.+.+|
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFW 296 (307)
T ss_pred EeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceece
Confidence 99999999999999999999999888887 89999999987776655 3445566
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.6e-37 Score=264.82 Aligned_cols=282 Identities=29% Similarity=0.531 Sum_probs=243.5
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEEC
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDA 90 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~ 90 (349)
.+.+|.++|.++.|+| ++++|++++.|+.+++|+..+++....+.+|...+..+.|.+++.+|++++.|+.|++|++
T Consensus 4 ~~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 4 TLKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred HhcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 4579999999999997 7889999999999999999988888899999999999999999999999999999999999
Q ss_pred CCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 018860 91 LTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG 169 (349)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 169 (349)
.+++.+..+. |...+.++.|+++++++++++.|+.+++||+...+ ....+..|...+.++.|.+. +.+++++..++.
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~ 158 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGT 158 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCc-CCEEEEEcCCCc
Confidence 9877666654 66789999999999999988889999999997433 23345567788999999876 556667776799
Q ss_pred EEEEECCCCceEEeecCC-CCeeEEEEcCCCcEE-EEecCCeEEEEecCCceeeEEE-cCCCceEEeeecCCCCCEEEEe
Q 018860 170 VRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYI-TTADGSTVKFWDANHFGLVKSY-NMPCTIESASLEPKYGNKFVAG 246 (349)
Q Consensus 170 v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
|++||+++++....+..+ ..+.++.++|+++.+ +++.++.+++||++....+..+ .+...+..+.+.+. +..++++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~ 237 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASG 237 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEE
Confidence 999999988887777654 479999999999554 5566999999999988887777 45557788888885 6777777
Q ss_pred cCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 247 GEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 247 ~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
+.|+.|++||+.+++....+..|...|.+++|+|++++|++++.||.+++|+
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7899999999999888888889999999999999999999999999999996
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.7e-37 Score=284.05 Aligned_cols=280 Identities=27% Similarity=0.421 Sum_probs=239.4
Q ss_pred CCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCC--eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEEC-C
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDA-L 91 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~-~ 91 (349)
|...|.++.|+| +|++|++++.|+.+++|+..+.+ .++.+.+|...|..++|+++++++++++.|++|||||+ .
T Consensus 158 ~~~sv~~~~fs~---~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSP---DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcC---CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence 478999999997 89999999999999999997777 78888999999999999999999999999999999999 5
Q ss_pred CCCEEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 018860 92 TGDVLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGV 170 (349)
Q Consensus 92 ~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v 170 (349)
.+.+++++ .|...|++++|+|+++++++|+.|++||+||+.+ ....+.+.+|.+.|++++|.+++.. +++++.|+.|
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~-l~s~s~d~~i 312 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNL-LVSASYDGTI 312 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCE-EEEcCCCccE
Confidence 55788887 4999999999999999999999999999999987 4556788999999999998765554 4555778999
Q ss_pred EEEECCCCc--eEEeecCC--C-CeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCCCc-e-E--EeeecCCCC
Q 018860 171 RLWDVRSGE--IVQTLETK--S-PVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCT-I-E--SASLEPKYG 240 (349)
Q Consensus 171 ~vwd~~~~~--~~~~~~~~--~-~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~-~--~~~~~~~~~ 240 (349)
++||+.++. +...+... . +++.+.|+|++.++.++ .|+++++||++...+...+..... . + .... ...+
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 391 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL-STGG 391 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc-cCCC
Confidence 999999998 45555432 2 68999999999987665 588999999998877766644322 1 1 1222 2357
Q ss_pred CEEEEecCCCeEEEEeCCCCcEEEEecCC-CcceeEEEEccCCCeEEEec--CCCCEEEecCC
Q 018860 241 NKFVAGGEDMWVRFFDFHTGNEIACNKGH-HGPVHCVRFSPGGESYASGS--EDGTIRIWQTG 300 (349)
Q Consensus 241 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~h-~~~i~~l~~sp~~~~l~sgs--~Dg~v~vW~~~ 300 (349)
..+++|+.|+.|++||+.++..+..+.+| ...+..++++|..+++++++ .|+.+++|..+
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 88999999999999999999999999999 99999999999999999988 79999999753
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-37 Score=265.55 Aligned_cols=306 Identities=22% Similarity=0.296 Sum_probs=237.1
Q ss_pred eeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC----CeEEEee------cc----cCCeEEEEECCCCCe
Q 018860 10 LVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG----DWIGTFE------GH----KGAVWSCCLDTNALR 75 (349)
Q Consensus 10 ~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~----~~~~~~~------~h----~~~v~~~~~~~~~~~ 75 (349)
.+++ |+.+|.+++|+|... ..+++|+.|.++++|++... ..+..|+ ++ ...|++++|+.+|..
T Consensus 173 kvl~-~~~~V~~~~WnP~~~--~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRD--GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred eecc-CCCceEEEecCchhh--hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 3444 999999999999533 37999999999999987531 1111121 22 356999999999999
Q ss_pred eEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEec
Q 018860 76 AASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLH 155 (349)
Q Consensus 76 l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~ 155 (349)
||+|+.||.+|+|+.........-.|+++|.++.|+..|++|++++.|+++.+||..++.. ...+..|..+-..+.|..
T Consensus 250 LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~ 328 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQS 328 (524)
T ss_pred EEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEec
Confidence 9999999999999986554333335999999999999999999999999999999855432 233444555556788864
Q ss_pred CCCeEEEEeeCCCeEEEEECCCCceEEeecC-CCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEEcC-CCceEE
Q 018860 156 SDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSYNM-PCTIES 232 (349)
Q Consensus 156 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~-~~~~~~ 232 (349)
.+ -|++++.|+.|+|+-+...+++.++.+ +++|+++.|+|.+.+|++ ++|++++||........+.+.. ...+..
T Consensus 329 ~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 329 ND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred Cc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceee
Confidence 43 467888889999999988888888765 578999999999998754 6799999999877665555443 334555
Q ss_pred eeecCC--------CCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCCCC
Q 018860 233 ASLEPK--------YGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTN 304 (349)
Q Consensus 233 ~~~~~~--------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~~ 304 (349)
+.|+|. .+..+++++.|++|++||...+.++..+..|..+|++|+|||++++||+|+.||.|.+|++.....
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 666553 356799999999999999999999999999999999999999999999999999999999865432
Q ss_pred CcceeeeccCeeeeeEeCh
Q 018860 305 DDTETLTANGTIGKVKVTA 323 (349)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ 323 (349)
. .+.+..+.+-++....
T Consensus 487 ~--~s~~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 487 V--KSYQGTGGIFELCWNA 503 (524)
T ss_pred e--EeecCCCeEEEEEEcC
Confidence 2 2333334444444433
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=238.84 Aligned_cols=285 Identities=22% Similarity=0.358 Sum_probs=226.0
Q ss_pred cccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC---CCeEEEe-ecccCCeEEEEECCCCCeeEEeeC
Q 018860 6 IAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET---GDWIGTF-EGHKGAVWSCCLDTNALRAASASA 81 (349)
Q Consensus 6 ~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~---~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~ 81 (349)
|..--++.||++.|-.++|+|. -|..|+|+|.|+.+|||+... ..+...+ .+|+..|++++|+|.+++|++||.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~--~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPG--KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccC--CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 4444567899999999999982 277999999999999999763 4455555 479999999999999999999999
Q ss_pred CCeEEEEECCCC--CEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCC--CCceeccCCCCeEEEEEecC
Q 018860 82 DFSAKVWDALTG--DVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDA--PPREVDRSPGSVRTVAWLHS 156 (349)
Q Consensus 82 D~~i~vWd~~~~--~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~--~~~~~~~~~~~i~~~~~~~~ 156 (349)
|.++-||.-..+ +++.+++ |.+.|.+++|+++|++||+++.|+.+=+|.+...+. ....++.|...|..+.|+|.
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 999999987655 4677775 889999999999999999999999999999874332 23456889999999999876
Q ss_pred CCeEEEEeeCCCeEEEEECC-CC--ceEEeecCC-CCeeEEEEcCCCcE-EEEecCCeEEEEecCCceeeEEEcCCCceE
Q 018860 157 DQTILSTCTDMGGVRLWDVR-SG--EIVQTLETK-SPVTSAEVSQDGRY-ITTADGSTVKFWDANHFGLVKSYNMPCTIE 231 (349)
Q Consensus 157 ~~~~l~~~~~dg~v~vwd~~-~~--~~~~~~~~~-~~v~~~~~~~~~~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 231 (349)
.+ +|++++-|++|++|+-. .. .+++++..+ +.|.++.|.+.|.. +++++|++++||-....- ...+...+.
T Consensus 162 ~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y 237 (312)
T KOG0645|consen 162 ED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALY 237 (312)
T ss_pred cc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccceE
Confidence 54 56677778999999876 33 467777654 47999999999855 556779999999855211 112223455
Q ss_pred EeeecCCCCCEEEEecCCCeEEEEeCCCCc------EE-EEecCCCcceeEEEEccC-CCeEEEecCCCCEEEecC
Q 018860 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGN------EI-ACNKGHHGPVHCVRFSPG-GESYASGSEDGTIRIWQT 299 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~------~~-~~~~~h~~~i~~l~~sp~-~~~l~sgs~Dg~v~vW~~ 299 (349)
.+++. +..+++++.|+.|++|.-...- .+ .....|...|+++.|.|. .+.|+|||.||.|++|.+
T Consensus 238 ~v~W~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 238 DVPWD---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eeeec---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 66665 4679999999999999765421 11 123578899999999995 678999999999999975
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-35 Score=266.40 Aligned_cols=284 Identities=26% Similarity=0.435 Sum_probs=234.9
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCe--EEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDTNALRAASASADFSAKVW 88 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vW 88 (349)
++.||.+.|.+|.|+. |+++|++||+|.++++|.....+- ...+.||++.|.++-|..+...+.|.+.||.+.+|
T Consensus 140 ~~~g~fddi~si~Ws~---DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 140 TYLGHFDDITSIDWSD---DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW 216 (893)
T ss_pred eecCCccceeEEEecc---CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence 3459999999999986 899999999999999998765543 67789999999999999999999999999999999
Q ss_pred ECCC-----------------------CCE-----------EEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 018860 89 DALT-----------------------GDV-----------LHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNR 133 (349)
Q Consensus 89 d~~~-----------------------~~~-----------~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~ 133 (349)
.... ++. .+-+. .+..|++.+|++..+.|++|-..|...+|.+..
T Consensus 217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~ 296 (893)
T KOG0291|consen 217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD 296 (893)
T ss_pred EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC
Confidence 8651 111 11111 125678888888888888877777777777542
Q ss_pred CC------------------------------------------CCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 018860 134 PD------------------------------------------APPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVR 171 (349)
Q Consensus 134 ~~------------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~ 171 (349)
.. .-....++|...+.+++++| +++++++|++||.|+
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVK 375 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEE
Confidence 11 00123457788899999885 566788999999999
Q ss_pred EEECCCCceEEeec-CCCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEEcCCCc--eEEeeecCCCCCEEEEec
Q 018860 172 LWDVRSGEIVQTLE-TKSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSYNMPCT--IESASLEPKYGNKFVAGG 247 (349)
Q Consensus 172 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 247 (349)
|||.++|-|..++. |.+.++.+.|+..++.+.+ +-||+|+.||+..++..+++..|.+ ..+++..|. +..+.+|+
T Consensus 376 vWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s-GelV~AG~ 454 (893)
T KOG0291|consen 376 VWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS-GELVCAGA 454 (893)
T ss_pred EEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC-CCEEEeec
Confidence 99999999999986 5678999999999988765 5699999999999999999988765 456777775 77788888
Q ss_pred CCC-eEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 248 EDM-WVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 248 ~d~-~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
.|. .|.+|++.+|+.+..+.||++||.+++|+|.+..|||||.|.+||+|++
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 776 7999999999999999999999999999999999999999999999996
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.2e-37 Score=276.61 Aligned_cols=252 Identities=25% Similarity=0.387 Sum_probs=214.8
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC-------------------------------CCeEE
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET-------------------------------GDWIG 55 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~-------------------------------~~~~~ 55 (349)
.+.+++..=-..++|+.|++ |+..||.|-.|..|++|.... ....+
T Consensus 369 ic~YT~~nt~~~v~ca~fSd---dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSD---DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred EEEEEEEEcCCcceeEeecC---CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 44556655556788999997 888999999999999997652 11235
Q ss_pred EeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 018860 56 TFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRP 134 (349)
Q Consensus 56 ~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~ 134 (349)
++.||+++|..+.|+|+.++|+|||.|++||+|.+.+..++-.+. |..+|..+.|+|-|-++||+|.|++.++|....
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~- 524 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH- 524 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-
Confidence 678999999999999999999999999999999999988777765 888999999999999999999999999999875
Q ss_pred CCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC-CCCeeEEEEcCCCcEEEEecCCeEEEE
Q 018860 135 DAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTADGSTVKFW 213 (349)
Q Consensus 135 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~d~~i~iw 213 (349)
..+.+.+.+|-..+.++.|+|+ ..++++|+.|.+||+||..+|..+..+.+ +.+|.+++|+|+|
T Consensus 525 ~~PlRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G-------------- 589 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG-------------- 589 (707)
T ss_pred CCchhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC--------------
Confidence 4567889999999999999765 55677889999999999999998887764 4577777777754
Q ss_pred ecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCC
Q 018860 214 DANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGT 293 (349)
Q Consensus 214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~ 293 (349)
++|++|+.|+.|.+||+.+++.+..+.+|++.|.++.||++|..||+||.|++
T Consensus 590 ---------------------------r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 590 ---------------------------RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred ---------------------------ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence 55666777777888888888888889999999999999999999999999999
Q ss_pred EEEecCCCCCC
Q 018860 294 IRIWQTGPVTN 304 (349)
Q Consensus 294 v~vW~~~~~~~ 304 (349)
|++||+.....
T Consensus 643 V~lWD~~~~~~ 653 (707)
T KOG0263|consen 643 VRLWDLTKVIE 653 (707)
T ss_pred EEEEEchhhcc
Confidence 99999865433
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.8e-35 Score=236.92 Aligned_cols=266 Identities=25% Similarity=0.420 Sum_probs=221.8
Q ss_pred EEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEecc-CCeEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 018860 54 IGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEH-KHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132 (349)
Q Consensus 54 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~ 132 (349)
.++++||.+.|.++.|++|+++|+|+|.||.+-|||..+....+.++- ...|..++|+|.|+++|+||-|....+|++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 489999999999999999999999999999999999999888888874 4679999999999999999999999999997
Q ss_pred CCC-----CCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcC-CCcEE-EE
Q 018860 133 RPD-----APPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQ-DGRYI-TT 204 (349)
Q Consensus 133 ~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~-~~~~l-~~ 204 (349)
..+ ...+++.+|.+.+.++.|.. +++++ |++.|.+..+||+++|+.+..+..+ ..|.++.++| +++.+ ++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~il-T~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHIL-TGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceE-ecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 542 23467889999999999986 55555 6666699999999999999988764 5899999999 66655 55
Q ss_pred ecCCeEEEEecCCceeeEEEcC-CCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecC--CCcceeEEEEccC
Q 018860 205 ADGSTVKFWDANHFGLVKSYNM-PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKG--HHGPVHCVRFSPG 281 (349)
Q Consensus 205 ~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--h~~~i~~l~~sp~ 281 (349)
+-|++.++||+|...+.+.|.. ...+.++.|+|. +.-|++|++|+++|+||++..+++..+.. -..+|++++||..
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred ccccceeeeeccCcceeEeecccccccceEEEccC-CCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 6699999999999999988764 567899999995 88999999999999999999988877753 3468999999999
Q ss_pred CCeEEEecCCCCEEEecCCCCCCCcceee-eccCeeeeeEeChh
Q 018860 282 GESYASGSEDGTIRIWQTGPVTNDDTETL-TANGTIGKVKVTAD 324 (349)
Q Consensus 282 ~~~l~sgs~Dg~v~vW~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 324 (349)
|++|.+|..|.++.+||+-...-. ..| .+.+.+.++.++++
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~v--g~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGERV--GVLAGHENRVSCLGVSPD 326 (343)
T ss_pred ccEEEeeecCCceeEeeccccceE--EEeeccCCeeEEEEECCC
Confidence 999999999999999997432111 112 23444555555554
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-35 Score=251.77 Aligned_cols=275 Identities=22% Similarity=0.421 Sum_probs=238.6
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEE
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVL 96 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~ 96 (349)
+.|++++|+. +|..||+|+.||.+|||+.. |..+.+|.-|+++|.++.|+.+|.+|++++.|+++-+||..+|+..
T Consensus 236 kdVT~L~Wn~---~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 236 KDVTSLDWNN---DGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCcceEEecC---CCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 5799999986 89999999999999999964 7889999999999999999999999999999999999999999888
Q ss_pred EEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 018860 97 HSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDV 175 (349)
Q Consensus 97 ~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~ 175 (349)
..|. |..+--.+.|-.+ ..+++++-|+.|+++.+.. +.+...+.+|.++|.++.|.|. +.+|++|++|++++||.+
T Consensus 312 q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~-~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGE-DRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSM 388 (524)
T ss_pred EeeeeccCCccceEEecC-ceEeecCCCceEEEEEecC-CCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeec
Confidence 8776 4444355677644 4588999999999999864 5567788889999999999864 567889999999999999
Q ss_pred CCCceEEeecCC-CCeeEEEEcCCCc----------EEEEecCCeEEEEecCCceeeEEE-cCCCceEEeeecCCCCCEE
Q 018860 176 RSGEIVQTLETK-SPVTSAEVSQDGR----------YITTADGSTVKFWDANHFGLVKSY-NMPCTIESASLEPKYGNKF 243 (349)
Q Consensus 176 ~~~~~~~~~~~~-~~v~~~~~~~~~~----------~l~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 243 (349)
....+++.+..+ ..+..+.|+|++. +++++.|++|++||+..+.++..+ .+..++.+++|+|. ++++
T Consensus 389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~-g~yl 467 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN-GRYL 467 (524)
T ss_pred CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC-CcEE
Confidence 888888877654 4688888888652 456678999999999999999998 56678999999985 9999
Q ss_pred EEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 244 VAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 244 ~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
++|+.|+.|.+|++.+++.++.+.+ ++.|..|+|+.+|..|..+-.|+.+++-|+.
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999998875 4569999999999999989999999987753
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.2e-37 Score=256.43 Aligned_cols=272 Identities=20% Similarity=0.336 Sum_probs=222.7
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG 93 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~ 93 (349)
...+.|+|++|. ...++||++|++|+|||..+.++++.+.||++.|.|+.++. +.|+|||.|.+|+|||.++|
T Consensus 195 e~skgVYClQYD-----D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 195 ENSKGVYCLQYD-----DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred ccCCceEEEEec-----chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCC
Confidence 456889999996 34689999999999999999999999999999998887754 48999999999999999999
Q ss_pred CEEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCC--CCceeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 018860 94 DVLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDA--PPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGV 170 (349)
Q Consensus 94 ~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v 170 (349)
+++.++ .|-..|..+.|+ ..++++++.|.+|++||+..+.. ..+.+.+|...|+.+.|. ..++++++.|.+|
T Consensus 268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTI 342 (499)
T ss_pred chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceE
Confidence 999885 577889999886 45899999999999999986642 224567898999999884 3477778888999
Q ss_pred EEEECCCCceEEeecCCC-CeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEEcCCC-ceEEeeecCCCCCEEEEec
Q 018860 171 RLWDVRSGEIVQTLETKS-PVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSYNMPC-TIESASLEPKYGNKFVAGG 247 (349)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 247 (349)
++|++.+++++.++..+. .+-++.+ .++++++ +.|.+|++||+..+.+++.+.... -+.++.|. +..+++|+
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd---~krIVSGa 417 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---NKRIVSGA 417 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec---Cceeeecc
Confidence 999999999999987654 4544433 4667654 569999999999999888776543 34566664 57899999
Q ss_pred CCCeEEEEeCCCCcEE---------EEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCCCC
Q 018860 248 EDMWVRFFDFHTGNEI---------ACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTN 304 (349)
Q Consensus 248 ~d~~i~v~d~~~~~~~---------~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~~ 304 (349)
.||+|++||+..+... ..+..|++.|..+.| |...+++.+.|.+|.+||.....+
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 9999999999876543 234578999999999 456789999999999999865543
No 28
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.6e-35 Score=247.83 Aligned_cols=279 Identities=20% Similarity=0.348 Sum_probs=231.1
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECC---CCCeeEEeeCCCeEEEEEC
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDT---NALRAASASADFSAKVWDA 90 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~s~D~~i~vWd~ 90 (349)
-|.+=|.+|.-. ++++++|++||++|+|+.. |+.+.++.||+++|.++++-. ....++|+|.|.++++|..
T Consensus 103 ~hdDWVSsv~~~-----~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA-----SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc-----CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 366666666443 5699999999999999975 889999999999999888733 3346999999999999998
Q ss_pred CCCCEEEE-----eccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC------------------------CCCcee
Q 018860 91 LTGDVLHS-----FEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPD------------------------APPREV 141 (349)
Q Consensus 91 ~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~------------------------~~~~~~ 141 (349)
+.++.... -.|...|.+++..++|..+++|+.|.++++|+..... .+...+
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 87764221 2589999999999999999999999999999932110 122346
Q ss_pred ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCce-
Q 018860 142 DRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFG- 219 (349)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~- 219 (349)
.+|..+|.++.|.+ ...+.+++.|.+|+.||+.++.....+..+..++++.++|..++|+++ .|..+++||.+++.
T Consensus 257 ~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred cccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 78999999999986 456778889999999999999999999988899999999988888765 69999999998753
Q ss_pred -e-eEEE-cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCc-EEEEecCCCcceeEEEEccCCCeEEEecCCCCEE
Q 018860 220 -L-VKSY-NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGN-EIACNKGHHGPVHCVRFSPGGESYASGSEDGTIR 295 (349)
Q Consensus 220 -~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~ 295 (349)
. .+++ .+..=+.++.++|.+..+|++++.|+++++||+++.+ .+..+.+|...|.++.|+ ++.+++||+.|++|+
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence 2 2222 3334467889999988999999999999999999988 789999999999999997 566899999999999
Q ss_pred EecCCC
Q 018860 296 IWQTGP 301 (349)
Q Consensus 296 vW~~~~ 301 (349)
++...+
T Consensus 414 i~~~~~ 419 (423)
T KOG0313|consen 414 IFKGSP 419 (423)
T ss_pred Eecccc
Confidence 997543
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-36 Score=264.17 Aligned_cols=282 Identities=20% Similarity=0.268 Sum_probs=254.1
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEEC
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDA 90 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~ 90 (349)
.+..|++.|-+|.|+| ....++++-..|.+.||+.++...+++++-...+|+++.|-+..+++++|+.|..|||++.
T Consensus 8 k~~~rSdRVKsVd~HP---tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHP---TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred HhhccCCceeeeecCC---CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 3456899999999998 4558999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 018860 91 LTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG 169 (349)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 169 (349)
++++.++.|+ |+..|++++.||..-+++|+|.|.+|++||....-.....+.+|...|..++|.|++..-+++++-|++
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 9999999996 999999999999999999999999999999987666677889999999999999999999999999999
Q ss_pred EEEEECCCCceEEeecCC-CCeeEEEEcCCC---cEEEEecCCeEEEEecCCceeeEEEc-CCCceEEeeecCCCCCEEE
Q 018860 170 VRLWDVRSGEIVQTLETK-SPVTSAEVSQDG---RYITTADGSTVKFWDANHFGLVKSYN-MPCTIESASLEPKYGNKFV 244 (349)
Q Consensus 170 v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~---~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 244 (349)
|+||.+.+..+..+++.+ ..|+++.+.+-| .++++++|.++++||.++..|++++. +...+..+.|+|. -..++
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~-lpiii 243 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE-LPIII 243 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC-CcEEE
Confidence 999999999888888864 579999999877 56677889999999999999998876 4456778888885 57899
Q ss_pred EecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEE
Q 018860 245 AGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRI 296 (349)
Q Consensus 245 ~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~v 296 (349)
+|+.||++|+|+..+-+...++...-+.|+|++-.+.+..++.|...|.|.+
T Consensus 244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999988887777777789999999998888888888887644
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.2e-34 Score=247.27 Aligned_cols=306 Identities=19% Similarity=0.318 Sum_probs=242.2
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEee---cccCCeEEEEECCCCCeeEEeeCCCeEEEE
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFE---GHKGAVWSCCLDTNALRAASASADFSAKVW 88 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~D~~i~vW 88 (349)
++.|.+.|+|+.||| ||.++|+++.||++.+||..+++.+..+. +|++.|.+++|+||++.++|+|.|.++|||
T Consensus 186 ~r~HskFV~~VRysP---DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSP---DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred ccccccceeeEEECC---CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence 478999999999998 89999999999999999999999999998 899999999999999999999999999999
Q ss_pred ECCCCCEEEEeccCCeE----EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEe
Q 018860 89 DALTGDVLHSFEHKHIV----RACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 89 d~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 164 (349)
|+.+..++.++.-...| -.+-|. +..|++.+.+|+|..++...+. ..+.+.+|...|+++..++++ ..|.+|
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~-~~i~Sg 338 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDG-KTIYSG 338 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEcCCC-CEEEee
Confidence 99999999988644332 223343 6789999999999999998766 677889999999999988766 566688
Q ss_pred eCCCeEEEEECCCCceEEee--cCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEE-------------------
Q 018860 165 TDMGGVRLWDVRSGEIVQTL--ETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKS------------------- 223 (349)
Q Consensus 165 ~~dg~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~------------------- 223 (349)
+-||.|.-||+.+|..-... .+.+.+..+.-+..+.+++++.|.++++.++........
T Consensus 339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG 418 (603)
T ss_pred ccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCC
Confidence 88899999999988765443 245678888888888999999999999997632111000
Q ss_pred ------------E---------cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcE--EEEecCCCcceeEEEEcc
Q 018860 224 ------------Y---------NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNE--IACNKGHHGPVHCVRFSP 280 (349)
Q Consensus 224 ------------~---------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~h~~~i~~l~~sp 280 (349)
+ ...-...+++++| ++..++.|+.|+.+++|.+...+. ......|.++|++++|||
T Consensus 419 ~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp 497 (603)
T KOG0318|consen 419 TAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP 497 (603)
T ss_pred EEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC
Confidence 0 0111234566676 478899999999999999987553 234567999999999999
Q ss_pred CCCeEEEecCCCCEEEecCCCCCCCcceeeeccCeeeeeEeChhh
Q 018860 281 GGESYASGSEDGTIRIWQTGPVTNDDTETLTANGTIGKVKVTADE 325 (349)
Q Consensus 281 ~~~~l~sgs~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (349)
++.|||+|...+.+.+|++..-......-.-+...+..+.-+++.
T Consensus 498 d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 498 DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 999999999999999999865433222222233445555544444
No 31
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=249.38 Aligned_cols=278 Identities=26% Similarity=0.362 Sum_probs=238.9
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEE--------eecccCCeEEEEECCCCCeeEEeeCCCeE
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGT--------FEGHKGAVWSCCLDTNALRAASASADFSA 85 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 85 (349)
|.+..+-|..||| ||+||++||.||.|.+|++.+|+.-+. |--|.++|.|++|+.|...||||+.||.|
T Consensus 211 g~KSh~EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred ccccchhheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 4556678899997 999999999999999999998876443 34588899999999999999999999999
Q ss_pred EEEECCCCCEEEEec--cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEE
Q 018860 86 KVWDALTGDVLHSFE--HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILST 163 (349)
Q Consensus 86 ~vWd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 163 (349)
+||.+.+|+|++.|. |...|+++.|+.|+..+++++.|.++|+--+..++ ..+++.+|...|+...|.+++..++ +
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSyvn~a~ft~dG~~ii-s 365 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSYVNEATFTDDGHHII-S 365 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccccccceEEcCCCCeEE-E
Confidence 999999999999986 88899999999999999999999999999987644 4678899999999999986655554 6
Q ss_pred eeCCCeEEEEECCCCceEEeecCC---CCeeEEEEcCCC--cEEEEecCCeEEEEecCCceeeEEEcCC----CceEEee
Q 018860 164 CTDMGGVRLWDVRSGEIVQTLETK---SPVTSAEVSQDG--RYITTADGSTVKFWDANHFGLVKSYNMP----CTIESAS 234 (349)
Q Consensus 164 ~~~dg~v~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~--~~l~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~ 234 (349)
++.||+|++|+.++.+|+.++... -+++.+-..|.+ .+++|...+++.+.++.. ..++.+... ..+..++
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEE
Confidence 777799999999999999888653 368888777754 567777788999998864 345555432 2456777
Q ss_pred ecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 235 LEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 235 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
++|. +..+++.+.|+.++.|.+.+|+.-.++.-|...+-.++.+|..+.||+-|+||.+++|.
T Consensus 445 lSpk-GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPK-GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCC-CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 8885 88999999999999999999999999999999999999999999999999999999995
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-35 Score=269.83 Aligned_cols=209 Identities=26% Similarity=0.463 Sum_probs=189.2
Q ss_pred ccccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCe
Q 018860 5 KIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFS 84 (349)
Q Consensus 5 ~~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 84 (349)
......++-||++||+.+.|+| +.++|+|+|.|+++|+|...+..++-.++||..+||.+.|+|.|-|+||||.|++
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred CCceeEEeecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence 3456667899999999999998 8899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEE
Q 018860 85 AKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILST 163 (349)
Q Consensus 85 i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 163 (349)
.|+|.....+.++.+. |-+-|.|+.|+|+.+++++||.|.++|+||+.++. ..+.+.+|.++|.+++|+| ++.+|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF~GH~~~V~al~~Sp-~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-SVRIFTGHKGPVTALAFSP-CGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc-EEEEecCCCCceEEEEEcC-CCceEee
Confidence 9999998888888775 78889999999999999999999999999997654 4788899999999999997 6778889
Q ss_pred eeCCCeEEEEECCCCceEEeec-CCCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCc
Q 018860 164 CTDMGGVRLWDVRSGEIVQTLE-TKSPVTSAEVSQDGRYITT-ADGSTVKFWDANHF 218 (349)
Q Consensus 164 ~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~ 218 (349)
|+.||.|++||+.+++.+..+. +.+.+.++.|+.+|..|++ +.|.+|++||+.+.
T Consensus 595 g~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999887775 4567999999999998866 45999999998653
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.2e-33 Score=278.86 Aligned_cols=280 Identities=15% Similarity=0.214 Sum_probs=222.1
Q ss_pred ccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC--------CeEEEeecccCCeEEEEECC-CCCeeEEeeCCC
Q 018860 13 HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG--------DWIGTFEGHKGAVWSCCLDT-NALRAASASADF 83 (349)
Q Consensus 13 ~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~--------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~ 83 (349)
.+|.+.|.+++|+| +|++|++|+.|++|++|+.... ..+..+.+ ...|.+++|++ ++.+|+|++.|+
T Consensus 480 ~~~~~~V~~i~fs~---dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 480 LNSSNLVCAIGFDR---DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCC
Confidence 45999999999997 8999999999999999996431 12334444 45789999976 478999999999
Q ss_pred eEEEEECCCCCEEEEec-cCCeEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEE
Q 018860 84 SAKVWDALTGDVLHSFE-HKHIVRACSFSE-DTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTIL 161 (349)
Q Consensus 84 ~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 161 (349)
+|++||+.+++.+..+. |...|.+++|+| ++.+|++|+.|++|++||+..... ...+. +...+.++.|.++++.++
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~-~~~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIK-TKANICCVQFPSESGRSL 633 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEe-cCCCeEEEEEeCCCCCEE
Confidence 99999999988877764 888999999997 789999999999999999975432 22333 345788999988888888
Q ss_pred EEeeCCCeEEEEECCCCc-eEEeec-CCCCeeEEEEcCCCcEEEEecCCeEEEEecCCc------eeeEEEcC-CCceEE
Q 018860 162 STCTDMGGVRLWDVRSGE-IVQTLE-TKSPVTSAEVSQDGRYITTADGSTVKFWDANHF------GLVKSYNM-PCTIES 232 (349)
Q Consensus 162 ~~~~~dg~v~vwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~------~~~~~~~~-~~~~~~ 232 (349)
++|+.||.|++||+++++ .+..+. +...+..+.|.+...+++++.|++|++||++.. .+++.+.. ...+..
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 999999999999998765 344444 456799999985555567778999999999742 34555543 334566
Q ss_pred eeecCCCCCEEEEecCCCeEEEEeCCCCcEEEE-------------ecCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 233 ASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIAC-------------NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-------------~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
+++.+. +.++++|+.|+.|++|+......+.. ...|...|.+++|+|++.+|++|+.||+|+||+.
T Consensus 714 v~~s~~-~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 714 VGLSVS-DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCC-CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 778875 78999999999999999865543321 1235567999999999999999999999999974
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=260.95 Aligned_cols=282 Identities=20% Similarity=0.296 Sum_probs=241.6
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECC
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDAL 91 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~ 91 (349)
+-|-.+.|.++.|-. |+.++|+.++....+|+|+..+..+. .+.||+..|.++....+|-+|+|||.|+++++|.++
T Consensus 319 ivG~ndEI~Dm~~lG--~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLG--PEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred hcCCchhheeeeecC--CccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 357778899999854 57789999999999999998877776 889999999999977788899999999999999885
Q ss_pred CCCEE----EE-eccCCeEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCC--CCc------eeccCCCCeEEEEEecCC
Q 018860 92 TGDVL----HS-FEHKHIVRACSFSEDT-HLLLTGGMEKILRIFDLNRPDA--PPR------EVDRSPGSVRTVAWLHSD 157 (349)
Q Consensus 92 ~~~~~----~~-~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~lwd~~~~~~--~~~------~~~~~~~~i~~~~~~~~~ 157 (349)
++... .. ..|.+.|.+++++..+ .+++++|.|.++++|++...+. ... ....|.+.|++++..|+
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n- 474 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN- 474 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC-
Confidence 54322 21 2489999999998754 5889999999999999976221 111 23468889999998764
Q ss_pred CeEEEEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEEc-CCCceEEee
Q 018860 158 QTILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSYN-MPCTIESAS 234 (349)
Q Consensus 158 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~ 234 (349)
..+++||+.|++.++|++.+.+.+..+.++ ..+.++.|+|..+++++ +.|.+|+||.+.++.+++++. +.+.+..+.
T Consensus 475 dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~ 554 (775)
T KOG0319|consen 475 DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS 554 (775)
T ss_pred CceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee
Confidence 568899999999999999998888888764 57999999999888755 669999999999999999997 667788888
Q ss_pred ecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 235 LEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 235 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
|.. ++..|++++.||-|++|++.+++++.++.+|++.||+++.+|...+++||+.||.|.+|.
T Consensus 555 F~~-~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 555 FIR-NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eee-CCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 875 489999999999999999999999999999999999999999999999999999999994
No 35
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=241.53 Aligned_cols=285 Identities=25% Similarity=0.355 Sum_probs=233.1
Q ss_pred eeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCC------------------CCCeEEEeecccCCeEEEEECC
Q 018860 10 LVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGE------------------TGDWIGTFEGHKGAVWSCCLDT 71 (349)
Q Consensus 10 ~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~------------------~~~~~~~~~~h~~~v~~~~~~~ 71 (349)
+++..|+.++++.+||| ||.++++||.|..|+|.|.+ ....+++|..|.++|.++.|+|
T Consensus 106 ~ylt~HK~~cR~aafs~---DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSP---DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred EEEeecccceeeeeeCC---CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 45678999999999997 99999999999999999854 1256899999999999999999
Q ss_pred CCCeeEEeeCCCeEEEEECCCCCEE---EEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC--CceeccCCC
Q 018860 72 NALRAASASADFSAKVWDALTGDVL---HSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAP--PREVDRSPG 146 (349)
Q Consensus 72 ~~~~l~s~s~D~~i~vWd~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~--~~~~~~~~~ 146 (349)
....|+||+.|++||+||....... +.|....+|+++.|+|.|.+|+.|....++|+||+++.+.- ...-..|.+
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 9999999999999999998764333 34456678999999999999999999999999999875531 123356888
Q ss_pred CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC---CCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeE
Q 018860 147 SVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET---KSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVK 222 (349)
Q Consensus 147 ~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 222 (349)
.|+++.+++. +.+.++++.||.|++||--+++|+.++.. +..|++..|..+++++.++ .|..+++|.+.++++++
T Consensus 263 ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 263 AITQVRYSST-GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred ceeEEEecCC-ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 9999999865 45666899999999999999999988752 4679999999999997665 59999999999999998
Q ss_pred EEcCCCc------eEEeeecCCCCCEEEEe-cCCCeEEEEeCCCCcEEEEe-cCCCcceeEEEEccCCCeEEEecCCCCE
Q 018860 223 SYNMPCT------IESASLEPKYGNKFVAG-GEDMWVRFFDFHTGNEIACN-KGHHGPVHCVRFSPGGESYASGSEDGTI 294 (349)
Q Consensus 223 ~~~~~~~------~~~~~~~~~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~-~~h~~~i~~l~~sp~~~~l~sgs~Dg~v 294 (349)
.+..... -....|+.. ..+++.- -..+.++-||.+++..+..+ .+|++++..+..||.+.-++++|.|..+
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNht-EdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHT-EDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred EEecCCcccchhhhhhhhhcCc-cceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence 8754321 122333332 3444432 34567899999998876544 5899999999999999999999999999
Q ss_pred EEecC
Q 018860 295 RIWQT 299 (349)
Q Consensus 295 ~vW~~ 299 (349)
|+|--
T Consensus 421 RFWyr 425 (430)
T KOG0640|consen 421 RFWYR 425 (430)
T ss_pred eeeee
Confidence 99953
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.4e-35 Score=243.03 Aligned_cols=247 Identities=24% Similarity=0.389 Sum_probs=215.3
Q ss_pred CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 018860 52 DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFD 130 (349)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd 130 (349)
++.+.++||-++|.|+++.|-.++++||+.|++|+|||+.+|+...++. |-..|+.+++|+-.-++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 3457789999999999999999999999999999999999999999887 889999999999999999999999999999
Q ss_pred CCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec-CCCCeeEEEEcC-CCcEEEEecCC
Q 018860 131 LNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE-TKSPVTSAEVSQ-DGRYITTADGS 208 (349)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~d~ 208 (349)
+...+ ..+.+.+|-..|.+++..|.. .++++|+.|.++|+||+|+...+..+. +..+|..+.+.| |.+.++++.|+
T Consensus 222 Le~nk-vIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 222 LEYNK-VIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred chhhh-hHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 97543 467889999999999976654 466688888999999999999999998 457899999887 56788888999
Q ss_pred eEEEEecCCceeeEEEc-CCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEE
Q 018860 209 TVKFWDANHFGLVKSYN-MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYAS 287 (349)
Q Consensus 209 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s 287 (349)
+|++||++.++....+. +...+.+++++|. ...|++++.| .|+.|++..+..+..+.+|+.-|++++...|+ ++++
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~lhP~-e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPK-ENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEecCCc-hhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence 99999999988766554 4566888999985 5677777776 58899999999998899999999999998665 7889
Q ss_pred ecCCCCEEEecCCCCC
Q 018860 288 GSEDGTIRIWQTGPVT 303 (349)
Q Consensus 288 gs~Dg~v~vW~~~~~~ 303 (349)
|+..|.+.+||...+.
T Consensus 377 G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGH 392 (460)
T ss_pred cCCceEEEEEecCcCc
Confidence 9999999999986543
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.7e-34 Score=255.67 Aligned_cols=283 Identities=19% Similarity=0.361 Sum_probs=235.9
Q ss_pred CCCceeeEEEeecCCCccEEEEEecC-CCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKD-SSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG 93 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d-~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~ 93 (349)
-+.+|..+.|+. .|..||-|+.- |.+.+|..++..++...+||...+.+++.+|||+++|||+.||.|||||..+|
T Consensus 306 s~~~I~t~~~N~---tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 306 SDQKILTVSFNS---TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred ccceeeEEEecc---cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 345677888874 68899888765 68999999988888899999999999999999999999999999999999999
Q ss_pred CEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCcee-ccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 018860 94 DVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREV-DRSPGSVRTVAWLHSDQTILSTCTDMGGVR 171 (349)
Q Consensus 94 ~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~ 171 (349)
-|..+|. |...|+++.|+..|+.+++++-||++|.||+..... .+.+ .+.+-...+++..|.+..+++++-+.-.|.
T Consensus 383 fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 383 FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF 461 (893)
T ss_pred eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence 9999985 999999999999999999999999999999975432 2222 233445567777777776666666666899
Q ss_pred EEECCCCceEEeecC-CCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCc-eeeEEEcCCCceEEeeecCCCCCEEEEecC
Q 018860 172 LWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITT-ADGSTVKFWDANHF-GLVKSYNMPCTIESASLEPKYGNKFVAGGE 248 (349)
Q Consensus 172 vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
+|++++|+.+..+.+ .+||.+++|+|.+..|++ +.|.+||+||+-.. .....+.....+..++|.|+ ++.+++++.
T Consensus 462 vWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd-G~elaVaTl 540 (893)
T KOG0291|consen 462 VWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD-GKELAVATL 540 (893)
T ss_pred EEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCC-CCeEEEEEe
Confidence 999999999999875 569999999999998866 56999999998543 45566777778889999995 899999999
Q ss_pred CCeEEEEeCCCCcEEEEec--------------------CCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 249 DMWVRFFDFHTGNEIACNK--------------------GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 249 d~~i~v~d~~~~~~~~~~~--------------------~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
||.|.+||...+.....+. ......+++++|+||.++++|+..+.|++|++...
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 9999999988765543321 22357899999999999999999999999998653
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-34 Score=258.25 Aligned_cols=284 Identities=21% Similarity=0.362 Sum_probs=223.1
Q ss_pred CCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCe--eEEeeCCCeEEEEECCC
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALR--AASASADFSAKVWDALT 92 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~s~D~~i~vWd~~~ 92 (349)
|++||.-++|+| .|..|++|+.|+.+++||+..+.+++.|+||.+.|.++.|+|+..+ |++|+.|+++++||+..
T Consensus 104 He~Pvi~ma~~~---~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 104 HEAPVITMAFDP---TGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred cCCCeEEEEEcC---CCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 999999999997 6789999999999999999999999999999999999999997664 89999999999999985
Q ss_pred CC-EEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC--------------------------------
Q 018860 93 GD-VLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPP-------------------------------- 138 (349)
Q Consensus 93 ~~-~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~-------------------------------- 138 (349)
.. +++.. .|...|++++|++|+..++++|.|+.+.+||+...+...
T Consensus 181 ~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g 260 (775)
T KOG0319|consen 181 KRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG 260 (775)
T ss_pred CchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence 54 35554 488999999999999999999999999999964211000
Q ss_pred --------------------------------------------------------------------------------
Q 018860 139 -------------------------------------------------------------------------------- 138 (349)
Q Consensus 139 -------------------------------------------------------------------------------- 138 (349)
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la 340 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA 340 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence
Q ss_pred ------------------ceeccCCCCeEEEE----------------------------------------------Ee
Q 018860 139 ------------------REVDRSPGSVRTVA----------------------------------------------WL 154 (349)
Q Consensus 139 ------------------~~~~~~~~~i~~~~----------------------------------------------~~ 154 (349)
..+.+|...|.++. ++
T Consensus 341 VATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 341 VATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGS 420 (775)
T ss_pred EEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeec
Confidence 00112333333333 22
Q ss_pred cCCCeEEEEeeCCCeEEEEECCCCceE---Eee-------cCCCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEE
Q 018860 155 HSDQTILSTCTDMGGVRLWDVRSGEIV---QTL-------ETKSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKS 223 (349)
Q Consensus 155 ~~~~~~l~~~~~dg~v~vwd~~~~~~~---~~~-------~~~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 223 (349)
.....+|++++.|.++++|+++..+.- ..+ .|...|++++++|+.++++++ .|.+.++|++........
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v 500 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV 500 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE
Confidence 222334444444445555554431100 001 133468999999999998765 599999999998777776
Q ss_pred EcC-CCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 224 YNM-PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 224 ~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
+.. ...+-++.|.+. ++.+++++.|.+|++|.+.+..+++++.||+..|..+.|-.++..|+|++.||-+|+|++...
T Consensus 501 LsGH~RGvw~V~Fs~~-dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSKN-DQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eeCCccceEEEEeccc-cceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 654 456788999885 789999999999999999999999999999999999999999999999999999999998654
No 39
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.9e-33 Score=221.02 Aligned_cols=257 Identities=21% Similarity=0.367 Sum_probs=207.3
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCC--eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCC
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGD 94 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~ 94 (349)
..|+.+...| ++++||+|+. -.||+||..++. ++.+|++|+..|+++.|..+|+++.|||.||++||||+....
T Consensus 41 sqVNrLeiTp---dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~ 116 (311)
T KOG0315|consen 41 SQVNRLEITP---DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS 116 (311)
T ss_pred cceeeEEEcC---CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc
Confidence 4566775554 8888987765 678999988764 699999999999999999999999999999999999999988
Q ss_pred EEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 018860 95 VLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWD 174 (349)
Q Consensus 95 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd 174 (349)
+.+.+.|..+|+++..+|+...|++|.++|.|++||+.........+......+.++...+ ++..++++.+.|...+|+
T Consensus 117 ~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~ 195 (311)
T KOG0315|consen 117 CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWR 195 (311)
T ss_pred cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEE
Confidence 9999999999999999999999999999999999999765443333334445788888765 455666777789999999
Q ss_pred CCCCce------EEeecC-CCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCc-eeeEEEcCCCce-EEeeecCCCCCEEE
Q 018860 175 VRSGEI------VQTLET-KSPVTSAEVSQDGRYITT-ADGSTVKFWDANHF-GLVKSYNMPCTI-ESASLEPKYGNKFV 244 (349)
Q Consensus 175 ~~~~~~------~~~~~~-~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 244 (349)
+-+..- +..++. ..-+..+.++|++++|++ +.|.+++||++..+ +....+....+. -.++|+. ++.+++
T Consensus 196 l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~Ylv 274 (311)
T KOG0315|consen 196 LLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLV 274 (311)
T ss_pred ccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEE
Confidence 976432 333433 345788899999999866 56999999999987 333333333333 3455554 699999
Q ss_pred EecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEc
Q 018860 245 AGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFS 279 (349)
Q Consensus 245 ~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s 279 (349)
+|+.|+.+|+|++..++.+..+.+|..+..|++..
T Consensus 275 Tassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 275 TASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999999999999888888764
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-34 Score=241.78 Aligned_cols=250 Identities=24% Similarity=0.378 Sum_probs=213.6
Q ss_pred eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 018860 53 WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDL 131 (349)
Q Consensus 53 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~ 131 (349)
+...+.+|..+|+.+-|+|+-...++++.|++|++||..+|++...++ |.+.|..++|+..|+++++++.|-.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 455667899999999999999999999999999999999999987775 8889999999999999999999999999999
Q ss_pred CCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCC-CeeEEEEcCCCcEEEEe-cCCe
Q 018860 132 NRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKS-PVTSAEVSQDGRYITTA-DGST 209 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~ 209 (349)
.......+.+.+|...|.++.|.|.+. .+++|+.|.+|+.||..+|.++.++..+. -+..++.+.||.+++++ .|.+
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 765555667788888999999998874 55678888999999999999999998754 68899999999988765 5899
Q ss_pred EEEEecCCcee---eEEEcCCCceEEeeecCC--------------CCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcc
Q 018860 210 VKFWDANHFGL---VKSYNMPCTIESASLEPK--------------YGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGP 272 (349)
Q Consensus 210 i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~ 272 (349)
+++|-+.+..+ .+.+.++ +..++|.|. .+.++.+++.|++|++||+.++.++.++.+|..+
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~--vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw 336 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHP--VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW 336 (406)
T ss_pred EEEEEeccchhhhhhhccccc--eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccce
Confidence 99999988733 3333333 333333221 1358899999999999999999999999999999
Q ss_pred eeEEEEccCCCeEEEecCCCCEEEecCCCCCCC
Q 018860 273 VHCVRFSPGGESYASGSEDGTIRIWQTGPVTND 305 (349)
Q Consensus 273 i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~~~ 305 (349)
|..++|+|.|+||+|+..|++|++||+.....-
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 999999999999999999999999999866543
No 41
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=240.76 Aligned_cols=280 Identities=20% Similarity=0.352 Sum_probs=231.9
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECC
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDAL 91 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~ 91 (349)
|.||.+.|.|++=+|..+ ..++|||.||.++|||+.+.++++++++|.+.|..++++. ..++|+|.|++||.|.+.
T Consensus 62 L~gHrdGV~~lakhp~~l--s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKL--STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred ccccccccchhhcCcchh--hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 489999999999888443 3699999999999999999999999999999999999988 578999999999999986
Q ss_pred CCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 018860 92 TGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVR 171 (349)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~ 171 (349)
. ..++++.....+..+.-+..++.++|+|.+ |.+||.... .+...+......+.++.|+|-...+|++|+.|+.|.
T Consensus 138 ~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 138 G-PPLHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred C-CcceeeeccccccccccccccccccccCce--eeecccccC-CccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 4 578888777778888888888899999875 899998643 345566666678999999999999999998999999
Q ss_pred EEECCCCceEEeecCCCCeeEEEEcCCCc-EEEEecCCeEEEEecCCce-eeEEEc-CCCceEEeeecCCCCCEEEEecC
Q 018860 172 LWDVRSGEIVQTLETKSPVTSAEVSQDGR-YITTADGSTVKFWDANHFG-LVKSYN-MPCTIESASLEPKYGNKFVAGGE 248 (349)
Q Consensus 172 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
+||+|++.+++.+...-.-+.++|+|.+- ++++..|..+..||++... ++..+. +..-+..+.|+|. |+-|++|+.
T Consensus 214 LyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt-G~Efvsgsy 292 (433)
T KOG0268|consen 214 LYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT-GQEFVSGSY 292 (433)
T ss_pred EEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC-cchhccccc
Confidence 99999999998877666667899999664 3455669999999998753 333332 2345788999997 899999999
Q ss_pred CCeEEEEeCCCCcEEEEe-cCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 249 DMWVRFFDFHTGNEIACN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 249 d~~i~v~d~~~~~~~~~~-~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
|.+||+|..+.+..-..+ ......|.|+.||-|.++++|||.|+.|++|...
T Consensus 293 DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 293 DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 999999998866543222 1123569999999999999999999999999753
No 42
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=242.98 Aligned_cols=279 Identities=19% Similarity=0.303 Sum_probs=235.9
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCC--eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVW 88 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vW 88 (349)
+++.|.+.|.++.|-+ +...|++|+.|..|++|+....+ .+.++.|--++|+.+.|+++++.+++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEcc---CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 4578999999999986 55689999999999999865544 788999999999999999999999999999999999
Q ss_pred ECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCC
Q 018860 89 DALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDM 167 (349)
Q Consensus 89 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 167 (349)
++..++..+++. |...|+++.|......+++|+.|++|++||+.........+.. ..+..+... ...+.++-.|
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~---~~~~~SgH~D 321 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS---ISDVISGHFD 321 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEec---ceeeeecccc
Confidence 999999888875 9999999999988878999999999999999763332222221 234444432 4456677788
Q ss_pred CeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEE-EEecCCeEEEEecCCceeeEEEcCCC-----ceEEeeecCCCCC
Q 018860 168 GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYI-TTADGSTVKFWDANHFGLVKSYNMPC-----TIESASLEPKYGN 241 (349)
Q Consensus 168 g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 241 (349)
++||+||+++..+...++.++.++++..++++.-+ +++.|.++++.|+++......+..++ ....+.|+|. +.
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd-~~ 400 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD-GS 400 (459)
T ss_pred cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC-Cc
Confidence 99999999999999999999999999999999655 55679999999999998888876543 4567788885 89
Q ss_pred EEEEecCCCeEEEEeCCCCcEEEEecCCCc--ceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 242 KFVAGGEDMWVRFFDFHTGNEIACNKGHHG--PVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 242 ~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~--~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
|+++|+.||.|++|++.++++.+.+...+. .|++++|+|.|..|++++.++.+.+|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999887765443 599999999999999999999999993
No 43
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=258.32 Aligned_cols=250 Identities=18% Similarity=0.309 Sum_probs=189.8
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC-------------------------------------------
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET------------------------------------------- 50 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~------------------------------------------- 50 (349)
+|++.|.++.||+ ||+|||+|+.|+.|+||....
T Consensus 265 ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred ccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 8999999999997 999999999999999996332
Q ss_pred -----------------CCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcC-
Q 018860 51 -----------------GDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSE- 112 (349)
Q Consensus 51 -----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~- 112 (349)
-+++..|+||.+.|..+.|+.++ +|+|+|.|++||||++...+|++.|.|.+.|+|++|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV 420 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence 01235668999999999999876 79999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeE
Q 018860 113 DTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTS 192 (349)
Q Consensus 113 ~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~ 192 (349)
|.+++++|+-|+.+|||++...+ ...-.....-|++++|.|+++..+ .|+-+|.+++|+++..+.+....
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~av-IGt~~G~C~fY~t~~lk~~~~~~------- 490 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAV-IGTFNGYCRFYDTEGLKLVSDFH------- 490 (712)
T ss_pred CCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEE-EEEeccEEEEEEccCCeEEEeee-------
Confidence 78999999999999999985322 111122234567777766644333 44445777777665444332211
Q ss_pred EEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCc-
Q 018860 193 AEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHG- 271 (349)
Q Consensus 193 ~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~- 271 (349)
+.... ++ ..... .+..+.+.|.+...+++.+.|..|||||.++...+..++|+..
T Consensus 491 I~~~~-~K----------------------k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 491 IRLHN-KK----------------------KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT 546 (712)
T ss_pred Eeecc-Cc----------------------cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC
Confidence 11110 00 00111 4667777776667899999999999999988888888887643
Q ss_pred -ceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 272 -PVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 272 -~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
.-....|+.+|++|+++|+|..|++|+.+.
T Consensus 547 ~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 547 SSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 335678999999999999999999999743
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.5e-32 Score=244.53 Aligned_cols=286 Identities=23% Similarity=0.303 Sum_probs=241.1
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEE
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAK 86 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 86 (349)
...+++.||+..|+.++||. +...++|| ..+.++||+..+.++++++..- -+.++.|-|.++++++|...|.+.
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~---d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~ 437 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSS---DSILLASG-AGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQ 437 (888)
T ss_pred cceeeeccchhheeEEEeec---Cceeeeec-CCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceE
Confidence 45588899999999999996 55555555 4578999999999999999654 789999999999999999999999
Q ss_pred EEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----CCCCc-------eeccCCCCeEEEEEe
Q 018860 87 VWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRP----DAPPR-------EVDRSPGSVRTVAWL 154 (349)
Q Consensus 87 vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~----~~~~~-------~~~~~~~~i~~~~~~ 154 (349)
++|+.+...+.+++ |.+.+.+++.+||+..+++||.|++|++||...- ....+ .....+..+.++.++
T Consensus 438 vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 438 VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 99999887766664 8999999999999999999999999999996421 11111 112235678999988
Q ss_pred cCCCeEEEEeeCCCeEEEEECCCCceEEeecC-CCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEE-cCCCceE
Q 018860 155 HSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSY-NMPCTIE 231 (349)
Q Consensus 155 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~-~~~~~~~ 231 (349)
|+ +.+++.+--|++|+||-+.+-+..-.+.+ .-||.++.++||++++++ +.|.+|++|-++=+.|.+++ .+...+.
T Consensus 518 pd-gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 518 PD-GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM 596 (888)
T ss_pred CC-CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence 65 55666677779999999999887766665 559999999999998765 56999999999888777765 4556789
Q ss_pred EeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
.+.|.|. ...|.++|.|+.|+-||-..-+.++.+.+|...|+|++.+|+|.+++|+|.|.+|++|.-.
T Consensus 597 ~V~F~P~-~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 597 SVQFLPK-THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred EEEEccc-ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 9999994 7899999999999999998888999999999999999999999999999999999999754
No 45
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.5e-31 Score=229.03 Aligned_cols=285 Identities=21% Similarity=0.355 Sum_probs=234.8
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCC--eEEEeecccCCeEEEEECCCCCeeEEeeCC----Ce
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDTNALRAASASAD----FS 84 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D----~~ 84 (349)
++.+|..+|+-..||| .|.|+|||...|++|||+....+ +..+++.-.++|..++|+.++++|+..|.. |.
T Consensus 54 iYtEH~~~vtVAkySP---sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSP---SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred eeccccceeEEEEeCC---CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 4579999999999998 79999999999999999976544 456778888999999999999999887643 23
Q ss_pred EEEEECCCCCEEEEe-ccCCeEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEE
Q 018860 85 AKVWDALTGDVLHSF-EHKHIVRACSFSEDT-HLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILS 162 (349)
Q Consensus 85 i~vWd~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 162 (349)
+-+|| +|..+-.+ .|...|+++.|-|.. -+++||+.|.+|.+|+=. +.+-......|..-|.++.|+|+ +.+++
T Consensus 131 ~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysPD-G~~Fa 206 (603)
T KOG0318|consen 131 VFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSPD-GSRFA 206 (603)
T ss_pred EEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECCC-CCeEE
Confidence 55666 45444444 588899999999864 478999999999999843 22222345667888999999987 45566
Q ss_pred EeeCCCeEEEEECCCCceEEeec----CCCCeeEEEEcCCCcE-EEEecCCeEEEEecCCceeeEEEcCCCce----EEe
Q 018860 163 TCTDMGGVRLWDVRSGEIVQTLE----TKSPVTSAEVSQDGRY-ITTADGSTVKFWDANHFGLVKSYNMPCTI----ESA 233 (349)
Q Consensus 163 ~~~~dg~v~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~ 233 (349)
+.+.||++.+||-.+|+.+..+. +...+.++.|+||+.. ++++.|.+++|||+.+.++++++.+...+ ..+
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence 67777999999999999998886 4567999999999855 56678999999999999999998876542 333
Q ss_pred eecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCCCCC
Q 018860 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTND 305 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~~~ 305 (349)
.|. ...|++-+.+|.|.+++......+..+.||...|+++..+|++++|+|||.||.|.-|+.+.+...
T Consensus 287 lWq---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 287 LWQ---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred EEe---CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 443 567999999999999999999999999999999999999999999999999999999999876555
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.6e-32 Score=248.13 Aligned_cols=246 Identities=27% Similarity=0.465 Sum_probs=211.2
Q ss_pred EEEeecc-cCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCC--EEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEE
Q 018860 54 IGTFEGH-KGAVWSCCLDTNALRAASASADFSAKVWDALTGD--VLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIF 129 (349)
Q Consensus 54 ~~~~~~h-~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lw 129 (349)
...+.+| ...|.++.|+++|+.+++++.|+.+++|+...++ ..+.+ .|...|+.++|+|++.++++++.|++||+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 3455454 7889999999999999999999999999997776 55554 588899999999999999999999999999
Q ss_pred ECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCCcEEEEe-cC
Q 018860 130 DLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYITTA-DG 207 (349)
Q Consensus 130 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~d 207 (349)
|+.......+.+.+|...+++++|.|.+ .++++|+.|++||+||++++++...+..+ ..++.++|++++.+++++ .|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9955556667888999999999999888 78889999999999999999999999865 489999999999988765 49
Q ss_pred CeEEEEecCCce--eeEEEcCCC---ceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcc---eeEEEEc
Q 018860 208 STVKFWDANHFG--LVKSYNMPC---TIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGP---VHCVRFS 279 (349)
Q Consensus 208 ~~i~iwd~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~---i~~l~~s 279 (349)
+.|++||+.++. +.+.+.... .+..+.|+|. +.++++++.|+.+++||+..+..+..+.+|... +.+..++
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~-~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN-GKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCC-CcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 999999999988 444443322 3577888874 899999999999999999999999999998774 4445567
Q ss_pred cCCCeEEEecCCCCEEEecCCC
Q 018860 280 PGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 280 p~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
+.+.++++|+.|+.|++|+...
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCc
Confidence 8899999999999999999875
No 47
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-31 Score=212.56 Aligned_cols=273 Identities=22% Similarity=0.316 Sum_probs=228.4
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeE--EEeecccCCeEEEEECC-CCCeeEEeeCCCeEEE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDT-NALRAASASADFSAKV 87 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~v 87 (349)
++.+|...|..|+|+- +|..|++|+.|+++++|+.+...+. ...+||.+.|-.++|+| ....+++++.|++||+
T Consensus 15 ~~~~~~~~v~Sv~wn~---~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNC---DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcc---cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 3469999999999986 8999999999999999998766543 35578999999999876 4568999999999999
Q ss_pred EECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCC
Q 018860 88 WDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDM 167 (349)
Q Consensus 88 Wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 167 (349)
||+..+++...+.....-.-+.|+|+|++++.++.|..|...|.++.+... ....+..+..+.|..++..++++.+.
T Consensus 92 wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~--~~~~~~e~ne~~w~~~nd~Fflt~Gl- 168 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN--EEQFKFEVNEISWNNSNDLFFLTNGL- 168 (313)
T ss_pred EEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee--hhcccceeeeeeecCCCCEEEEecCC-
Confidence 999999999998876666678899999999999999999999987644322 12234467788898777777877776
Q ss_pred CeEEEEECCCCceEEeecC-CCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcC-CCceEEeeecCCCCCEEE
Q 018860 168 GGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNM-PCTIESASLEPKYGNKFV 244 (349)
Q Consensus 168 g~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 244 (349)
|+|.|-....-++++.+.. ...+.++.|+|+|++++++ .|..+.+||+....+.+.+.- .-++..+.|+. ++++|+
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lA 247 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLA 247 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccceee
Confidence 9999999888889888875 4578899999999998765 599999999998888777653 45677888886 599999
Q ss_pred EecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCC
Q 018860 245 AGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSED 291 (349)
Q Consensus 245 ~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~D 291 (349)
+|++|..|-+=++.+|..+..+. +.++-..++|+|...+||=+..|
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 99999999999999999988766 78899999999999999855443
No 48
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.6e-31 Score=246.63 Aligned_cols=276 Identities=25% Similarity=0.411 Sum_probs=231.3
Q ss_pred CCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEE-eecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG 93 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~ 93 (349)
|...+.+..|. ..++++++.|++|.+|+..++..+.. +.||.+.|+++++..-+.+|++|+.|.++||||..+|
T Consensus 207 ~~~~~~~~q~~-----~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH-----DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee-----cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 45667777776 34799999999999999999998888 9999999999999987789999999999999999999
Q ss_pred CEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 018860 94 DVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRL 172 (349)
Q Consensus 94 ~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~v 172 (349)
+|.+.+. |.+.|+++... ...+++|+.|.+|++|++.++.. ...+.+|.++|.++... +.++++++.|++|++
T Consensus 282 ~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKV 355 (537)
T ss_pred cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec---CCEEEEEecCceEEE
Confidence 9999997 88899888764 45788899999999999985443 34455599999999875 456667777799999
Q ss_pred EECCCCceEEeecCC-CCeeEEEEcCCCcEEEEecCCeEEEEecCCc-eeeEEEcCCCceEEeeecCCCCCEEEEecCCC
Q 018860 173 WDVRSGEIVQTLETK-SPVTSAEVSQDGRYITTADGSTVKFWDANHF-GLVKSYNMPCTIESASLEPKYGNKFVAGGEDM 250 (349)
Q Consensus 173 wd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 250 (349)
||++++++++++..+ ..|.++.+.+...++.++.|++|++||+++. +++..+..+..+.. .+.. .++.+++++.|+
T Consensus 356 W~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~-~l~~-~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 356 WDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS-SLLL-RDNFLVSSSADG 433 (537)
T ss_pred EEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccc-cccc-ccceeEeccccc
Confidence 999999999999865 5788887776656677788999999999999 88888776654331 1111 367899999999
Q ss_pred eEEEEeCCCCcEEEEecC-CCcceeEEEEccCCCeEEEecCCCCEEEecCCCCCCC
Q 018860 251 WVRFFDFHTGNEIACNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTND 305 (349)
Q Consensus 251 ~i~v~d~~~~~~~~~~~~-h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~~~ 305 (349)
+|++||..+++.+.++.+ |.+.|.++++. ...+++++.||++++||+......
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 999999999999999998 77999999886 467889999999999998766443
No 49
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=242.14 Aligned_cols=292 Identities=21% Similarity=0.364 Sum_probs=231.3
Q ss_pred CCccccccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEee
Q 018860 1 MDKKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASAS 80 (349)
Q Consensus 1 ~~~~~~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 80 (349)
|+.|++...+++..-+.+|+|+.-+| +.-+||.|-.||.|+||+..+...+-++.||+.+|+++.|+..|.+|+|||
T Consensus 50 lRtge~~~~l~~~~~k~evt~l~~~~---d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGs 126 (888)
T KOG0306|consen 50 LRTGEIEKKLILLKKKAEVTCLRSSD---DILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGS 126 (888)
T ss_pred eecchhhhhhhhhcccceEEEeeccC---CcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecC
Confidence 45566656666655556888887665 777899999999999999998889999999999999999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCe
Q 018860 81 ADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQT 159 (349)
Q Consensus 81 ~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (349)
.|+.|-|||+-...-+..+. |+..|+..-|..+.+++++.+.|..|++||+.++.. ....-.|.+.+.++++.+ .
T Consensus 127 kDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC-f~Thvd~r~Eiw~l~~~~---~ 202 (888)
T KOG0306|consen 127 KDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC-FETHVDHRGEIWALVLDE---K 202 (888)
T ss_pred CCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee-eeEEecccceEEEEEEec---c
Confidence 99999999998766666654 889999999998889999999999999999986443 334445667777777654 3
Q ss_pred EEEEeeCCCeEEEEEC----------------------------------------------------------------
Q 018860 160 ILSTCTDMGGVRLWDV---------------------------------------------------------------- 175 (349)
Q Consensus 160 ~l~~~~~dg~v~vwd~---------------------------------------------------------------- 175 (349)
++++++.++.+++|++
T Consensus 203 ~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~ 282 (888)
T KOG0306|consen 203 LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKI 282 (888)
T ss_pred eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHH
Confidence 4445555577777766
Q ss_pred ---------------------------------------------------------------------CC-Cce-----
Q 018860 176 ---------------------------------------------------------------------RS-GEI----- 180 (349)
Q Consensus 176 ---------------------------------------------------------------------~~-~~~----- 180 (349)
.. ++.
T Consensus 283 l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~ 362 (888)
T KOG0306|consen 283 LSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEAD 362 (888)
T ss_pred HHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccc
Confidence 10 000
Q ss_pred ----EEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEe
Q 018860 181 ----VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFD 256 (349)
Q Consensus 181 ----~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d 256 (349)
+....|.+.|.+++++.+...++++.++.+++|+..+.++++++... .+.+..|.|. +++++.|...|.+.+||
T Consensus 363 ~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpg-d~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 363 RTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPG-DRYIVLGTKNGELQVFD 440 (888)
T ss_pred ccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCC-CceEEEeccCCceEEEE
Confidence 00000112234455555655666677889999999999999998776 5566777775 78999999999999999
Q ss_pred CCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 257 FHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 257 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
+.+...+.+.++|.+.|++++.+|++..+++||.|.+|++|+..-
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 999999988999999999999999999999999999999999743
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.8e-31 Score=258.83 Aligned_cols=259 Identities=15% Similarity=0.240 Sum_probs=209.2
Q ss_pred CCCeEEEeCCCCCeEEE-----eecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC----C----EEEEeccCCeEE
Q 018860 40 DSSPMLRNGETGDWIGT-----FEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG----D----VLHSFEHKHIVR 106 (349)
Q Consensus 40 d~~i~iw~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~----~----~~~~~~~~~~v~ 106 (349)
+|-+++|+..+...... +.+|...|.+++|++++.+|+|||.|+.|+||+.... . ....+.+...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 56677887665444333 3458999999999999999999999999999997532 1 223344556789
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec
Q 018860 107 ACSFSE-DTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE 185 (349)
Q Consensus 107 ~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 185 (349)
+++|++ ++.+|++++.|++|++||+.+.. ....+..|.+.|.+++|+|.++.+|++|+.||+|++||++++..+..+.
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 999987 47899999999999999997543 3445678899999999998788888899999999999999999888887
Q ss_pred CCCCeeEEEEc-CCCcEEEE-ecCCeEEEEecCCce-eeEEE-cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCC-
Q 018860 186 TKSPVTSAEVS-QDGRYITT-ADGSTVKFWDANHFG-LVKSY-NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTG- 260 (349)
Q Consensus 186 ~~~~v~~~~~~-~~~~~l~~-~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~- 260 (349)
.+..+.++.|+ +++.++++ +.|+.|++||+++.. .+..+ .+...+..+.|. ++.++++++.|++|++||+..+
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCc
Confidence 77788889885 46776654 569999999998764 33333 344567777775 4688999999999999999743
Q ss_pred -----cEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 261 -----NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 261 -----~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
..+..+.+|...+.+++|+|++.+|++|+.|+.|++|+...
T Consensus 694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 46778899999999999999999999999999999999653
No 51
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-32 Score=232.08 Aligned_cols=276 Identities=26% Similarity=0.371 Sum_probs=233.1
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEE
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVL 96 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~ 96 (349)
.+|..++|||.+|.. +|.+|+ -.+.+|+..+-..++++...+..|.+++|-.||++|+.|...|.|+|+|.++.-.+
T Consensus 27 ~~vssl~fsp~~P~d--~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYD--FAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred CcceeEecCCCCCCc--eEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 578999999998863 444433 46788988877777778778889999999999999999999999999997664445
Q ss_pred EEe-ccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 018860 97 HSF-EHKHIVRACSFSED-THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWD 174 (349)
Q Consensus 97 ~~~-~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd 174 (349)
+.+ .|..+|..+.|+|. +..+++|+.|+.+++||+.+... ...+.+|...|.+.+|+|..+.++++|+-||+||+||
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 554 48899999999995 55677888999999999986553 5577899999999999999999999999999999999
Q ss_pred CCCC-ceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCcee-eEE-EcCCCceEEeeecCCCCCEEEEecCCCe
Q 018860 175 VRSG-EIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGL-VKS-YNMPCTIESASLEPKYGNKFVAGGEDMW 251 (349)
Q Consensus 175 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 251 (349)
+|+. ..+.++.+..+|..+.+.|.|..++++.+..+++||+-++.. +.. .++...+.++.+.. ++..|++++-|+.
T Consensus 183 tR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 183 TRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRH 261 (487)
T ss_pred eccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccc
Confidence 9987 788899999999999999999999999999999999985543 322 33566778888876 4789999999999
Q ss_pred EEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 252 VRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 252 i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
+++||+.+.+.+..++ -.++|.+++.+|+++.++.|-.+|.+-+=+
T Consensus 262 VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 262 VKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred eEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeeh
Confidence 9999988877776655 468999999999999999999999887764
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.8e-31 Score=217.41 Aligned_cols=269 Identities=21% Similarity=0.318 Sum_probs=214.1
Q ss_pred eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEE--Ee-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEE
Q 018860 53 WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLH--SF-EHKHIVRACSFSEDTHLLLTGGMEKILRIF 129 (349)
Q Consensus 53 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~--~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lw 129 (349)
++..+.||.+.|..+.|+|+|..|||||.|..|-+|++.. ++.. .+ .|.++|..+.|.+|++.|+++|.|++++.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4566789999999999999999999999999999999753 3322 22 499999999999999999999999999999
Q ss_pred ECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEE-EEecCC
Q 018860 130 DLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYI-TTADGS 208 (349)
Q Consensus 130 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~ 208 (349)
|..+++. .+..+.|...++++.-..-+..++.++++|+++++||+|+...+++++.+.+++++.|..++.-+ +++-|+
T Consensus 118 D~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred eccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 9987554 55677788888888755556788999999999999999999999999888889999999887554 555699
Q ss_pred eEEEEecCCceeeEEEcC-CCceEEeeecCCCCCEEEEecCCCeEEEEeCCC----CcEEEEecCCC----cceeEEEEc
Q 018860 209 TVKFWDANHFGLVKSYNM-PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHT----GNEIACNKGHH----GPVHCVRFS 279 (349)
Q Consensus 209 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~h~----~~i~~l~~s 279 (349)
.|++||++.......... ...+..+..++ ++.++.+-+.|.++++||++. ..++..+.+|. .....++|+
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence 999999998877766543 45677777776 588999999999999999874 23466666553 345667899
Q ss_pred cCCCeEEEecCCCCEEEecCCCCCCCcceeeeccCeeeeeEeChhh
Q 018860 280 PGGESYASGSEDGTIRIWQTGPVTNDDTETLTANGTIGKVKVTADE 325 (349)
Q Consensus 280 p~~~~l~sgs~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (349)
|++..+..||.|+.+++||.-.....- .-....|.+.++.|.+.+
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~r~~ly-klpGh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTSRRILY-KLPGHYGSVNEVDFHPTE 320 (338)
T ss_pred CCCCccccccccceEEEeecccccEEE-EcCCcceeEEEeeecCCC
Confidence 999999999999999999974321110 111234566666666543
No 53
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.9e-33 Score=233.66 Aligned_cols=236 Identities=21% Similarity=0.381 Sum_probs=198.5
Q ss_pred cCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEE-eccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc
Q 018860 61 KGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHS-FEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR 139 (349)
Q Consensus 61 ~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~ 139 (349)
+.+|..|.|.|+|++|+||+..|.+.+|+..+...... ..|..+|+++.|++++.+++||..+|.|+.|+.+... .+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 45789999999999999999999999999732211111 1388999999999999999999999999999986433 34
Q ss_pred eeccCC-CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCCcEEEE-ecCCeEEEEecC
Q 018860 140 EVDRSP-GSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYITT-ADGSTVKFWDAN 216 (349)
Q Consensus 140 ~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~ 216 (349)
..+.|. ..|+.++|+|.|.. |++|++||+|+|||.+..+....+.++ -.|.+++|+|...++++ +.|..|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDsk-F~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSK-FLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCce-eEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 445554 88999999986654 568999999999999988776667654 47999999998777655 568899999999
Q ss_pred CceeeEEEcC-CCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCC-CeEEEecCCCCE
Q 018860 217 HFGLVKSYNM-PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGG-ESYASGSEDGTI 294 (349)
Q Consensus 217 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~sgs~Dg~v 294 (349)
++.++-++.. ...+..+.|.+. +++|++++.|..+++||+++.+.+..+++|...++++.|+|-. .+|.+|+.||.|
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 9998876544 456788999986 6999999999999999999999999999999999999999964 578899999999
Q ss_pred EEecCC
Q 018860 295 RIWQTG 300 (349)
Q Consensus 295 ~vW~~~ 300 (349)
..|.++
T Consensus 332 vh~~v~ 337 (464)
T KOG0284|consen 332 VHWVVG 337 (464)
T ss_pred EEEecc
Confidence 999986
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-30 Score=209.17 Aligned_cols=281 Identities=23% Similarity=0.338 Sum_probs=227.7
Q ss_pred ceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeC--CCeEE
Q 018860 9 PLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASA--DFSAK 86 (349)
Q Consensus 9 ~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--D~~i~ 86 (349)
-++|+.-.+.|.++.|++ +|.+|++++.|.++++||..++..++++..++-.|..++|......++-++. |.+||
T Consensus 7 ak~f~~~~~~i~sl~fs~---~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSD---DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccCCCceeEEEecC---CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 345555567799999997 8999999999999999999999999999999989999999887777777776 99999
Q ss_pred EEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEee
Q 018860 87 VWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCT 165 (349)
Q Consensus 87 vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 165 (349)
.-++.+.+.++.|. |...|..++.+|.++.++|++.|++||+||++..+.+... .-.. -..++|.| .+.++|.+.
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l-~~~~--~pi~AfDp-~GLifA~~~ 159 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL-NLSG--RPIAAFDP-EGLIFALAN 159 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE-ecCC--CcceeECC-CCcEEEEec
Confidence 99999999999886 9999999999999999999999999999999865543322 1111 22345554 566777777
Q ss_pred CCCeEEEEECCCC--ceEEeecC----CCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCCCc----eEEee
Q 018860 166 DMGGVRLWDVRSG--EIVQTLET----KSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCT----IESAS 234 (349)
Q Consensus 166 ~dg~v~vwd~~~~--~~~~~~~~----~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~ 234 (349)
..+.|++||+|+- .+..++.. ....+.+.|+|||+++..+ ..+.+.+.|.-.+.....+..... ...++
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 6669999999963 34444432 4568899999999987655 568899999988887777655332 24677
Q ss_pred ecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecC-CCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 235 LEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 235 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
|.| +++++++|+.||+|++|++++++.+..+++ +.+++.++.|+|....++|+ +..+.+|-+
T Consensus 240 ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 240 FTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLP 302 (311)
T ss_pred ECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEec
Confidence 778 489999999999999999999999999888 79999999999987777655 457888954
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.5e-30 Score=222.56 Aligned_cols=245 Identities=31% Similarity=0.535 Sum_probs=209.2
Q ss_pred EEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 018860 54 IGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132 (349)
Q Consensus 54 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~ 132 (349)
++++++|..+|.+++|++++.+|++++.|+.|++|+..+++....+. |...+..+.|+|+++++++++.|+.+++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 35678999999999999999999999999999999998887665554 67788899999999999999999999999997
Q ss_pred CCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec-CCCCeeEEEEcCCCcEEEEec-CCeE
Q 018860 133 RPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE-TKSPVTSAEVSQDGRYITTAD-GSTV 210 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-d~~i 210 (349)
... ....+..+...+.++.|.+. +.++++++.+|.|++||+++++....+. +...+.++.++|++.+++++. ++.|
T Consensus 82 ~~~-~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 82 TGE-CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred ccc-ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 543 34455667778999999876 5567777767999999999888877776 455799999999998888876 9999
Q ss_pred EEEecCCceeeEEEcCCC-ceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEec
Q 018860 211 KFWDANHFGLVKSYNMPC-TIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS 289 (349)
Q Consensus 211 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs 289 (349)
++||++..+.+..+.... .+..+.+.|. ++.+++++.|+.|++||+.+++.+..+..|..+|.+++|+|++.++++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCC-cCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 999999877776665443 5778888875 66888888899999999999888888888999999999999998999999
Q ss_pred CCCCEEEecCCC
Q 018860 290 EDGTIRIWQTGP 301 (349)
Q Consensus 290 ~Dg~v~vW~~~~ 301 (349)
.||.|++|+...
T Consensus 239 ~~~~i~i~~~~~ 250 (289)
T cd00200 239 EDGTIRVWDLRT 250 (289)
T ss_pred CCCcEEEEEcCC
Confidence 999999999864
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-31 Score=209.83 Aligned_cols=244 Identities=25% Similarity=0.399 Sum_probs=206.7
Q ss_pred eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 018860 53 WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDL 131 (349)
Q Consensus 53 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~ 131 (349)
.++.+++|+++|.++.|+-+|+|.+||+.|++||+||...|.+++++. |...|..++.+.|...+++|+.|+.+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 356789999999999999999999999999999999999999999986 8889999999999999999999999999999
Q ss_pred CCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC--ceEEeecC-CCCeeEEEEcCCCcEEEEecCC
Q 018860 132 NRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSG--EIVQTLET-KSPVTSAEVSQDGRYITTADGS 208 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~d~ 208 (349)
++++ ..+.+.+|.+.|+++.|.. ...++++++-|.++++||-|+. ++++.+.. ...|.++.++.. ..++++.||
T Consensus 89 ~TGk-v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-eIvaGS~DG 165 (307)
T KOG0316|consen 89 NTGK-VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-EIVAGSVDG 165 (307)
T ss_pred ccCe-eeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc-EEEeeccCC
Confidence 8765 4677889999999999874 5567778888899999998764 56777753 557888877642 345667799
Q ss_pred eEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeE--EEEccCCCeEE
Q 018860 209 TVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHC--VRFSPGGESYA 286 (349)
Q Consensus 209 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~--l~~sp~~~~l~ 286 (349)
+++.||++.+.+...+ +..++.++.|+++ ++..++++.|+++|+.|-.+|+.++.++||...=+. .+++.....++
T Consensus 166 tvRtydiR~G~l~sDy-~g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDY-FGHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred cEEEEEeecceeehhh-cCCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEE
Confidence 9999999988765443 3446788888874 888999999999999999999999999999775544 45666677899
Q ss_pred EecCCCCEEEecCCC
Q 018860 287 SGSEDGTIRIWQTGP 301 (349)
Q Consensus 287 sgs~Dg~v~vW~~~~ 301 (349)
+||+||.|.+||+-.
T Consensus 244 sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 244 SGSEDGKVYFWDLVD 258 (307)
T ss_pred eccCCceEEEEEecc
Confidence 999999999999743
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=236.81 Aligned_cols=248 Identities=23% Similarity=0.390 Sum_probs=204.3
Q ss_pred CeEEEeecccCCeEEEEECC-CCCeeEEeeCCCeEEEEECCC-CCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEE
Q 018860 52 DWIGTFEGHKGAVWSCCLDT-NALRAASASADFSAKVWDALT-GDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRI 128 (349)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vWd~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~l 128 (349)
..+.++.||+..|.++.|.| .+.+|+|+|.|+.|+||++.. +.++++|. |..+|+.++|+++|..++|+|.|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 46789999999999999998 889999999999999999876 78898885 8899999999999999999999999999
Q ss_pred EECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC-CCCeeEEEEcCCCcE-EEEec
Q 018860 129 FDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRY-ITTAD 206 (349)
Q Consensus 129 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~ 206 (349)
||+.+++...+.- ....+.++.|.|++.+++++|+.|+.|+-||+|+++.++.+.. -..+..+.|-++++. +++++
T Consensus 285 wDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 9998766433322 2235678889988878888888899999999999999988865 467899999998855 56678
Q ss_pred CCeEEEEecCCceeeEEEcCCC--ceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcE---EEEecCCC--cceeEEEEc
Q 018860 207 GSTVKFWDANHFGLVKSYNMPC--TIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNE---IACNKGHH--GPVHCVRFS 279 (349)
Q Consensus 207 d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~h~--~~i~~l~~s 279 (349)
|+++++|+.+...+++....+. ...++..+|. +..+++-+.|+.|.+|.+...-. ...++||. +--..+.||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCC-CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence 9999999999877766543332 2346677774 78889999999999998754322 23456775 345668999
Q ss_pred cCCCeEEEecCCCCEEEecCCCC
Q 018860 280 PGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 280 p~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
|||.+|+||+.||.+.+||....
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred CCCCeEEeecCCccEEEeechhh
Confidence 99999999999999999998643
No 58
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-30 Score=208.64 Aligned_cols=238 Identities=21% Similarity=0.403 Sum_probs=191.0
Q ss_pred ccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC--CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEEC
Q 018860 13 HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDA 90 (349)
Q Consensus 13 ~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~ 90 (349)
.+|+..|+.|+|+| .|+||++||.|.+..||.-..+ +++.+++||...|.|++|+++|.+||||+.|++|.||.+
T Consensus 58 ~~hkrsVRsvAwsp---~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSP---HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred ccchheeeeeeecC---CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence 37999999999998 8999999999999999976544 679999999999999999999999999999999999998
Q ss_pred CCCC---EEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--CCCceeccCCCCeEEEEEecCCCeEEEEe
Q 018860 91 LTGD---VLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPD--APPREVDRSPGSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 91 ~~~~---~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 164 (349)
..+. +...++ |..-|..+.|+|...+|+|+|.|.+|++|+-...+ .....+.+|...+.+++|.+.+ .-+++|
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~ 213 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSC 213 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEe
Confidence 7554 455554 88899999999999999999999999999865322 1234677888899999998765 456688
Q ss_pred eCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCc------eee--EEEcCCCceEEeeec
Q 018860 165 TDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHF------GLV--KSYNMPCTIESASLE 236 (349)
Q Consensus 165 ~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~------~~~--~~~~~~~~~~~~~~~ 236 (349)
++|++|+||-..+.- ...+..++..+.+. ++...+++.|+.|++|..... .++ +...+...++++.+.
T Consensus 214 sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 214 SDDGTVSIWRLYTDL---SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred cCCcceEeeeeccCc---chhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc
Confidence 999999999765221 11233467778888 777777788999999965431 111 111234468899999
Q ss_pred CCCCCEEEEecCCCeEEEEeCC
Q 018860 237 PKYGNKFVAGGEDMWVRFFDFH 258 (349)
Q Consensus 237 ~~~~~~~~~~~~d~~i~v~d~~ 258 (349)
|...+.+++|++||.|++|.+.
T Consensus 290 p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCCceeecCCCceEEEEEec
Confidence 9778899999999999999864
No 59
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-30 Score=233.21 Aligned_cols=280 Identities=20% Similarity=0.324 Sum_probs=232.6
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeE--EEeecccCCeEE-EEECC-CCCeeEEeeCC
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWI--GTFEGHKGAVWS-CCLDT-NALRAASASAD 82 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~--~~~~~h~~~v~~-~~~~~-~~~~l~s~s~D 82 (349)
.-..++.||+..|..+++. ++..++++|+|+++++|.....+++ ..+.+|.+.|.+ +++.+ ++-+|++|+.|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~----~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVT----DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred eeEEEeccCccchheeEec----CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc
Confidence 3456789999999999876 4558999999999999998766664 567889988877 88774 55579999999
Q ss_pred CeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEE
Q 018860 83 FSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTIL 161 (349)
Q Consensus 83 ~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 161 (349)
.+|-+|...+..++.++. |...|.+++...++. ++|||+|.++++|.... ....+++|+..|.++...|.+ .+
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~ 154 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TY 154 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cE
Confidence 999999999999988875 999999998877777 99999999999998743 334588999999999998876 45
Q ss_pred EEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCC
Q 018860 162 STCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYG 240 (349)
Q Consensus 162 ~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
+||+.|++||+|.- ++.++++.++ ..|+.+++.+++.+++|+.||.|++|++........+.+..-+.++.... ++
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~-~~ 231 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMAL-SD 231 (745)
T ss_pred EeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecC-CC
Confidence 57778899999964 7788888765 46899999999999999999999999997666666677776777777444 37
Q ss_pred CEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 241 NKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 241 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
..++++++|+++|+|+-. ++.+.+.--+..||++.+-++|+ +++|+.||.||||.....
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 889999999999999976 66666664456899999988886 678999999999987643
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-30 Score=229.94 Aligned_cols=268 Identities=19% Similarity=0.243 Sum_probs=227.5
Q ss_pred ccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec--cCCeEEEE
Q 018860 31 GFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE--HKHIVRAC 108 (349)
Q Consensus 31 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~v~~~ 108 (349)
...|+.|. ...+.+|+..++......+-+...|+++.|+++|.+|+.|-.+|.|.|||..+.+.+..+. |...|-++
T Consensus 188 ~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 188 ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSL 266 (484)
T ss_pred CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEE
Confidence 33566554 4678999999988766666678999999999999999999999999999998887777664 67889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEee-cCC
Q 018860 109 SFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTL-ETK 187 (349)
Q Consensus 109 ~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~ 187 (349)
+|. +..+.+|+.|+.|..+|++..+.....+.+|..+|..+.|+++ +..+++|+.|+.+.|||.....+...+ ++.
T Consensus 267 aW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~ 343 (484)
T KOG0305|consen 267 AWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKFTFTEHT 343 (484)
T ss_pred ecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC-CCeeccCCCccceEeccCCCccccEEEeccc
Confidence 998 6789999999999999998776655567889999999999864 556778888899999999776666555 567
Q ss_pred CCeeEEEEcCCC-cEEEEe---cCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEE-ecCCCeEEEEeCCCCcE
Q 018860 188 SPVTSAEVSQDG-RYITTA---DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVA-GGEDMWVRFFDFHTGNE 262 (349)
Q Consensus 188 ~~v~~~~~~~~~-~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~v~d~~~~~~ 262 (349)
..|.+++|+|-. .+|+++ .|+.|++||..++..++......+++.+.|.+....++.+ |..++.|.+|++.+.+.
T Consensus 344 aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 344 AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 789999999954 445443 3899999999999999999989999999999976555555 44678999999999999
Q ss_pred EEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 263 IACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 263 ~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
+..+.+|...|..+++||+|..+++|+.|.++++|++-..
T Consensus 424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999999999999998554
No 61
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.3e-29 Score=233.58 Aligned_cols=227 Identities=21% Similarity=0.308 Sum_probs=177.8
Q ss_pred ceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC-------CeEEEeecccCCeEEEEECCCC-CeeEEee
Q 018860 9 PLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDTNA-LRAASAS 80 (349)
Q Consensus 9 ~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s 80 (349)
+..+.||.++|.+++|+|. ++++|++||.|++|++|+..++ +.+..+.+|...|.+++|+|++ .+|+||+
T Consensus 68 ~~~l~GH~~~V~~v~fsP~--d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs 145 (493)
T PTZ00421 68 PPILLGQEGPIIDVAFNPF--DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG 145 (493)
T ss_pred CceEeCCCCCEEEEEEcCC--CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence 3457899999999999973 5679999999999999998654 3577899999999999999975 6899999
Q ss_pred CCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCC-eEEEEEecCCC
Q 018860 81 ADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGS-VRTVAWLHSDQ 158 (349)
Q Consensus 81 ~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~ 158 (349)
.|++|+|||+.+++.+..+. |...|.+++|+|++.+|++++.|++|++||+++... ...+..|.+. ...+.|.+.++
T Consensus 146 ~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKRKD 224 (493)
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-EEEEecCCCCcceEEEEcCCCC
Confidence 99999999999998887775 888999999999999999999999999999986543 3445566544 34667888777
Q ss_pred eEEEEe---eCCCeEEEEECCCCc-eEEeec--CCCCeeEEEEcCCCcEEEE-e-cCCeEEEEecCCceeeEEEcCC--C
Q 018860 159 TILSTC---TDMGGVRLWDVRSGE-IVQTLE--TKSPVTSAEVSQDGRYITT-A-DGSTVKFWDANHFGLVKSYNMP--C 228 (349)
Q Consensus 159 ~~l~~~---~~dg~v~vwd~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~--~ 228 (349)
.+++++ +.|++|++||+++.. ++.... ....+....|++++.+++. + .|+.|++||+.+..++...... .
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~ 304 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE 304 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC
Confidence 777655 347899999998754 343333 2334556678899887654 4 4899999999988776654332 2
Q ss_pred ceEEeeecCC
Q 018860 229 TIESASLEPK 238 (349)
Q Consensus 229 ~~~~~~~~~~ 238 (349)
....+++.|.
T Consensus 305 ~~~g~~~~pk 314 (493)
T PTZ00421 305 PHKGLCMMPK 314 (493)
T ss_pred CCcceEeccc
Confidence 3445666664
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.1e-31 Score=211.38 Aligned_cols=241 Identities=22% Similarity=0.285 Sum_probs=194.0
Q ss_pred CCceeeEEEeecCCCccEEEEEecCCCeEEEeCC-CCCeEEEeecccCCeEEEEECC-CCCeeEEeeCCCeEEEEECCCC
Q 018860 16 SRPVVDLFYSPITPDGFFLISASKDSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDT-NALRAASASADFSAKVWDALTG 93 (349)
Q Consensus 16 ~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~ 93 (349)
++.+.+++|++. ....+++++.||++++||.. ...+++.++.|+..|.++.+++ +...++++|.|++||+|+..-.
T Consensus 60 ~D~LfdV~Wse~--~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 60 EDGLFDVAWSEN--HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred ccceeEeeecCC--CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 345678889874 34578899999999999953 2357899999999999999987 4556788899999999999888
Q ss_pred CEEEEec-cCCeEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 018860 94 DVLHSFE-HKHIVRACSFSE-DTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVR 171 (349)
Q Consensus 94 ~~~~~~~-~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~ 171 (349)
..+.+|. |...|...+|+| ..++++++|.|+++++||++.++.... +..|..++.++.|+.-+.++++|++.|+.||
T Consensus 138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEE
Confidence 8888875 888999999999 578999999999999999987765433 6678889999999999999999999999999
Q ss_pred EEECCCCc-eEEeecCCC-CeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCC
Q 018860 172 LWDVRSGE-IVQTLETKS-PVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGED 249 (349)
Q Consensus 172 vwd~~~~~-~~~~~~~~~-~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 249 (349)
.||+|+-+ ++..+..+. .| ..+.++|.....+++++.|
T Consensus 217 ~wDir~~r~pl~eL~gh~~AV----------------------------------------Rkvk~Sph~~~lLaSasYD 256 (311)
T KOG0277|consen 217 GWDIRNLRTPLFELNGHGLAV----------------------------------------RKVKFSPHHASLLASASYD 256 (311)
T ss_pred EEehhhccccceeecCCceEE----------------------------------------EEEecCcchhhHhhhcccc
Confidence 99998754 222222211 23 3345555556678888889
Q ss_pred CeEEEEeCCCCc-EEEEecCCCcceeEEEEccC-CCeEEEecCCCCEEEecC
Q 018860 250 MWVRFFDFHTGN-EIACNKGHHGPVHCVRFSPG-GESYASGSEDGTIRIWQT 299 (349)
Q Consensus 250 ~~i~v~d~~~~~-~~~~~~~h~~~i~~l~~sp~-~~~l~sgs~Dg~v~vW~~ 299 (349)
-++|+||...+. .+.+...|+.-+..+.||+- ..++|+.+.|..++||+.
T Consensus 257 mT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 257 MTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999887444 34456678899999999985 568999999999999986
No 63
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=7.1e-30 Score=218.90 Aligned_cols=283 Identities=17% Similarity=0.262 Sum_probs=226.8
Q ss_pred ceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeE-----------------EEe-ecccCCeEEEEEC
Q 018860 9 PLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWI-----------------GTF-EGHKGAVWSCCLD 70 (349)
Q Consensus 9 ~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~-----------------~~~-~~h~~~v~~~~~~ 70 (349)
+.+...|.-+|.+++++| +++++++++.|++|.-|+..++... ..- ++|...+.+++++
T Consensus 135 ~~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred ceeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence 556678999999999997 8899999999999999987665422 111 3899999999999
Q ss_pred CCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeE
Q 018860 71 TNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVR 149 (349)
Q Consensus 71 ~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~ 149 (349)
+|++|||||+.|..|.||+..+.+.++.+. |.+.|.+++|-...+.+++++.|+++++|+++.. .....+.+|+..|.
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-SYVETLYGHQDGVL 290 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-HHHHHHhCCcccee
Confidence 999999999999999999999999998865 8899999999998899999999999999998642 33456788999999
Q ss_pred EEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCc
Q 018860 150 TVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCT 229 (349)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~ 229 (349)
.+..+. -+..+..++.|+++++|++.....+....+...+-++++-.+..+++++++|.|-+|++.+.+++.+...+..
T Consensus 291 ~IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 291 GIDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred eechhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccc
Confidence 988664 4556667778899999999654443333445578899999999999999999999999998888766544321
Q ss_pred -------------eEEeeecCCCCCEEEEecCCCeEEEEeCCCC----cEEEEecCCCcceeEEEEccCCCeEE-EecCC
Q 018860 230 -------------IESASLEPKYGNKFVAGGEDMWVRFFDFHTG----NEIACNKGHHGPVHCVRFSPGGESYA-SGSED 291 (349)
Q Consensus 230 -------------~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~h~~~i~~l~~sp~~~~l~-sgs~D 291 (349)
+.+++..| ..+++++|+.+|.||+|-+..+ +.+..+. -.+.|++++|+++|+.|+ ..+..
T Consensus 370 v~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred ccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccc
Confidence 34556666 4788999999999999999877 2334443 678899999999999655 44555
Q ss_pred CCEEEec
Q 018860 292 GTIRIWQ 298 (349)
Q Consensus 292 g~v~vW~ 298 (349)
..+=-|-
T Consensus 448 hRlGRW~ 454 (479)
T KOG0299|consen 448 HRLGRWW 454 (479)
T ss_pred cccceee
Confidence 5555553
No 64
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.2e-29 Score=208.11 Aligned_cols=243 Identities=18% Similarity=0.304 Sum_probs=202.3
Q ss_pred EEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEe-ccCCeEEEEEEcCCCC--EEEEEeCCCeEEEEE
Q 018860 54 IGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSF-EHKHIVRACSFSEDTH--LLLTGGMEKILRIFD 130 (349)
Q Consensus 54 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~s~~~d~~i~lwd 130 (349)
+..+..|.++|++++.+ +.++||||.|-+|+|||......+..+ .|.+.|+++.|.++-. .|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 56778999999999985 779999999999999999887666554 5889999999998764 899999999999999
Q ss_pred CCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeE
Q 018860 131 LNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTV 210 (349)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i 210 (349)
...- .....+..|.+.|+.++.+|.+ .+..+.+.|+.+++||+-+|+....+........+.|+|.|..++.+....|
T Consensus 114 ~~~W-~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i 191 (362)
T KOG0294|consen 114 VGSW-ELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKI 191 (362)
T ss_pred cCCe-EEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEE
Confidence 8643 3456678899999999987655 4555666679999999999988777766666677999999997777777789
Q ss_pred EEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEE--ccCCCeEEEe
Q 018860 211 KFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRF--SPGGESYASG 288 (349)
Q Consensus 211 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~--sp~~~~l~sg 288 (349)
.+|.+...........+..+.++.| .++..+++|++|+.|++||..+...+..+.+|...|..+.+ .|.+.+|+|+
T Consensus 192 ~i~q~d~A~v~~~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTa 269 (362)
T KOG0294|consen 192 DIYQLDNASVFREIENPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTA 269 (362)
T ss_pred EEEecccHhHhhhhhccccceeeee--cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEe
Confidence 9999988777666666544444444 45789999999999999999999999999999999999985 3567899999
Q ss_pred cCCCCEEEecCCCC
Q 018860 289 SEDGTIRIWQTGPV 302 (349)
Q Consensus 289 s~Dg~v~vW~~~~~ 302 (349)
|.||.|++||.+..
T Consensus 270 SSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 270 SSDGFIKVWDIDME 283 (362)
T ss_pred ccCceEEEEEcccc
Confidence 99999999999765
No 65
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.3e-30 Score=230.81 Aligned_cols=245 Identities=22% Similarity=0.337 Sum_probs=212.8
Q ss_pred EEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEecc-CCeEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 018860 54 IGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEH-KHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132 (349)
Q Consensus 54 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~ 132 (349)
.+.+..|+..|.++.|+|...+++++=..|.|.|||.++...++.|+- ..+|+++.|-+-.+.+++|+.|..||+|+++
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 455666999999999999999999999999999999999999999984 4589999999999999999999999999998
Q ss_pred CCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC-ceEEeecCC-CCeeEEEEcCCC--cEEEEecCC
Q 018860 133 RPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSG-EIVQTLETK-SPVTSAEVSQDG--RYITTADGS 208 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~-~~v~~~~~~~~~--~~l~~~~d~ 208 (349)
+.+. ...+..|+..|++++.+|..+.+| +++||-+|++||-..+ .+.++++++ .-|++++|+|.. .+.+++-|+
T Consensus 86 t~ek-V~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 86 TGEK-VKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ccee-eEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 7554 567889999999999887776655 7788899999998765 566778765 479999999964 567778899
Q ss_pred eEEEEecCCceeeEEEc-CCCceEEeeecCCC-CCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEE
Q 018860 209 TVKFWDANHFGLVKSYN-MPCTIESASLEPKY-GNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYA 286 (349)
Q Consensus 209 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~ 286 (349)
+|++|.+....+..++. +...+.++.+.+.. ..++++|++|.+|++||..+..+++++.||...|..+.|+|.-+.++
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 99999999887766664 34567888887642 34899999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEecCC
Q 018860 287 SGSEDGTIRIWQTG 300 (349)
Q Consensus 287 sgs~Dg~v~vW~~~ 300 (349)
|||+||++|||+..
T Consensus 244 sgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSK 257 (794)
T ss_pred EecCCccEEEecCc
Confidence 99999999999864
No 66
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=1.3e-31 Score=222.21 Aligned_cols=240 Identities=18% Similarity=0.308 Sum_probs=193.0
Q ss_pred cccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeE
Q 018860 6 IAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSA 85 (349)
Q Consensus 6 ~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 85 (349)
+--..+|.||++.|.|+.|. .+.|+|||+|.++++||.++++++.++=+|...|..+.|+.. +++|+|.|.+|
T Consensus 227 ~~c~~~L~GHtGSVLCLqyd-----~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng--~mvtcSkDrsi 299 (499)
T KOG0281|consen 227 LECLKILTGHTGSVLCLQYD-----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG--YMVTCSKDRSI 299 (499)
T ss_pred HHHHHhhhcCCCcEEeeecc-----ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC--EEEEecCCcee
Confidence 34456778999999999995 569999999999999999999999999999999999999754 89999999999
Q ss_pred EEEECCCCCEE---EE-eccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEE
Q 018860 86 KVWDALTGDVL---HS-FEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTIL 161 (349)
Q Consensus 86 ~vWd~~~~~~~---~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 161 (349)
+|||+.....+ +. ..|...|+.+.|+ .++|++++.|++|++|++.+.. ..+.+.+|+-.|.++.+ .+.++
T Consensus 300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e-fvRtl~gHkRGIAClQY---r~rlv 373 (499)
T KOG0281|consen 300 AVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE-FVRTLNGHKRGIACLQY---RDRLV 373 (499)
T ss_pred EEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee-eehhhhcccccceehhc---cCeEE
Confidence 99998765321 11 1488899999885 4599999999999999997654 36778889888887765 56788
Q ss_pred EEeeCCCeEEEEECCCCceEEeecCCC-CeeEEEEcCCCcEEEEecCCeEEEEecCCceeeE----------EEcCCCce
Q 018860 162 STCTDMGGVRLWDVRSGEIVQTLETKS-PVTSAEVSQDGRYITTADGSTVKFWDANHFGLVK----------SYNMPCTI 230 (349)
Q Consensus 162 ~~~~~dg~v~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~----------~~~~~~~~ 230 (349)
++|+.|.+||+||+..|.++..++++. -|.++.|.. .+.++++-||+|++||+.+....+ ...+...+
T Consensus 374 VSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~-krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRV 452 (499)
T KOG0281|consen 374 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRV 452 (499)
T ss_pred EecCCCceEEEEeccccHHHHHHhchHHhhhheeecC-ceeeeccccceEEEEecccccCCcccccchHHHhhhhcccee
Confidence 899999999999999999999998765 578888863 455667789999999997643221 11223345
Q ss_pred EEeeecCCCCCEEEEecCCCeEEEEeCCCCcE
Q 018860 231 ESASLEPKYGNKFVAGGEDMWVRFFDFHTGNE 262 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~ 262 (349)
..+.|. ...+++++-|.+|-+||+..+-.
T Consensus 453 FrLQFD---~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 453 FRLQFD---EFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEEeec---ceEEEeccCCCeEEEEEcCCCCc
Confidence 555553 56788999999999999876544
No 67
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.2e-30 Score=235.52 Aligned_cols=278 Identities=18% Similarity=0.282 Sum_probs=225.6
Q ss_pred CCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCE
Q 018860 16 SRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDV 95 (349)
Q Consensus 16 ~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~ 95 (349)
+..|-.+.|+|. --.++++--+|.|++||+.=+.++..|..|.++|+.++|+|++.+++|||.|..||||+..+.+|
T Consensus 9 SsRvKglsFHP~---rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 9 SSRVKGLSFHPK---RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred cccccceecCCC---CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 345678899984 44899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 018860 96 LHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWD 174 (349)
Q Consensus 96 ~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd 174 (349)
+.++ .|-..|+.+.|++.--.|+|+|.|.+||+|+..+. .....+.+|...|.+..|+|..+ ++++++-|.+|||||
T Consensus 86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWD 163 (1202)
T ss_pred hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEe
Confidence 8886 48899999999999999999999999999998654 34567788999999999987655 455677779999999
Q ss_pred CCCCc-----e-----------------------E-EeecCC-CCeeEEEEcCCCcEEE-EecCCeEEEEecCCcee---
Q 018860 175 VRSGE-----I-----------------------V-QTLETK-SPVTSAEVSQDGRYIT-TADGSTVKFWDANHFGL--- 220 (349)
Q Consensus 175 ~~~~~-----~-----------------------~-~~~~~~-~~v~~~~~~~~~~~l~-~~~d~~i~iwd~~~~~~--- 220 (349)
+..-+ + + +.++++ ..|+-++|+|.--+++ +++|+.|++|..+..+.
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee
Confidence 74211 0 0 112222 3688889999876665 56789999998864331
Q ss_pred eEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 221 VKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
-....+-..+.++.|+|. .+.+++.+.|++||+||+...+.+++++..++.-|.++-+|..+++|.|-. +=+-++.+.
T Consensus 244 DtcrgH~nnVssvlfhp~-q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHD-sGm~VFkle 321 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHPH-QDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHD-SGMIVFKLE 321 (1202)
T ss_pred hhhhcccCCcceEEecCc-cceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecC-CceEEEEEc
Confidence 112233446778888885 788999999999999999999999999878889999999999998876554 445555543
No 68
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.3e-30 Score=211.04 Aligned_cols=287 Identities=20% Similarity=0.323 Sum_probs=228.3
Q ss_pred eeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEE
Q 018860 10 LVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWD 89 (349)
Q Consensus 10 ~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd 89 (349)
.+|.||++.|..++-.. .-..+.++|.|.+.+||..+++.|+.++.||.+.|.++.|++++.+++|+|.|++..||.
T Consensus 142 re~~GHkDGiW~Vaa~~---tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADS---TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhhcccccceeeehhhc---CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45679999999997654 334889999999999999999999999999999999999999999999999999999997
Q ss_pred C------CC--------CC--------------------------EEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEE
Q 018860 90 A------LT--------GD--------------------------VLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRI 128 (349)
Q Consensus 90 ~------~~--------~~--------------------------~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~l 128 (349)
. .. ++ ++..+ .|...|.++.|-..|..++++++|++..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 11 00 01111 26777888899999999999999999999
Q ss_pred EECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eEEeecCC-CCeeEEEEcCCCcEEEEec
Q 018860 129 FDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGE-IVQTLETK-SPVTSAEVSQDGRYITTAD 206 (349)
Q Consensus 129 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~~-~~v~~~~~~~~~~~l~~~~ 206 (349)
||+.++. ....+.+|..+.+-+. .++.+.++++++.|-+.|+||.|... .+..+.++ ..|+++.|.-+.+.+++++
T Consensus 299 wDVEtge-~v~~LtGHd~ELtHcs-tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSD 376 (481)
T KOG0300|consen 299 WDVETGE-VVNILTGHDSELTHCS-THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSD 376 (481)
T ss_pred eeeccCc-eeccccCcchhccccc-cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCC
Confidence 9998754 4566778888877766 35678899999999999999998532 34455544 5799999999999999999
Q ss_pred CCeEEEEecCCce-eeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEE----ecCCCcceeEEEEccC
Q 018860 207 GSTVKFWDANHFG-LVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIAC----NKGHHGPVHCVRFSPG 281 (349)
Q Consensus 207 d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~----~~~h~~~i~~l~~sp~ 281 (349)
|.+|++||+++.+ ++.++.....+..++++.. ...++.--++..||+||+........ -++|...|.|++|..+
T Consensus 377 DrTvKvWdLrNMRsplATIRtdS~~NRvavs~g-~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIRTDSPANRVAVSKG-HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred CceEEEeeeccccCcceeeecCCccceeEeecC-CceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 9999999998864 4556666666666666542 34666667888999999976544322 3589999999999855
Q ss_pred C--CeEEEecCCCCEEEecCCCC
Q 018860 282 G--ESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 282 ~--~~l~sgs~Dg~v~vW~~~~~ 302 (349)
- .-|.+++.|..+.-|++..+
T Consensus 456 hp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 456 HPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CcccccccccccceeeeeEeccc
Confidence 3 34789999999999987543
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=216.01 Aligned_cols=277 Identities=23% Similarity=0.320 Sum_probs=229.7
Q ss_pred ceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEE
Q 018860 18 PVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLH 97 (349)
Q Consensus 18 ~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~ 97 (349)
.+.++.-.| ....+++|+.|.++.++|..++..+.+|+||+..|..+.++++...+++++.|..||||......+..
T Consensus 221 gi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~ 297 (506)
T KOG0289|consen 221 GITALDIIP---SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT 297 (506)
T ss_pred CeeEEeecC---CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc
Confidence 445554444 24578999999999999999999999999999999999999999999999999999999987655443
Q ss_pred E-eccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceec-cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 018860 98 S-FEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVD-RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDV 175 (349)
Q Consensus 98 ~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~ 175 (349)
. ..|..+|+.+..+|.|.+|++++.|+++...|+........... +..-.+++.+|+ +|+.+|.++..|+.|++||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CCceEEeccCCCceEEEEEc
Confidence 3 45899999999999999999999999999999876543221111 122347778775 67899999999999999999
Q ss_pred CCCceEEeecC-CCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEEcCCCc--eEEeeecCCCCCEEEEecCCCe
Q 018860 176 RSGEIVQTLET-KSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSYNMPCT--IESASLEPKYGNKFVAGGEDMW 251 (349)
Q Consensus 176 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~ 251 (349)
.++..+..|+. ..+|..+.|+.+|.+|++ ++|+.|++||+|+.+..+++..+.. +.++.|.+. +.+++.++.|-.
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S-Gt~L~~~g~~l~ 455 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS-GTYLGIAGSDLQ 455 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC-CCeEEeecceeE
Confidence 99988888875 468999999999999876 5678899999999998888877664 778888875 899999988888
Q ss_pred EEEEeCC--CCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 252 VRFFDFH--TGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 252 i~v~d~~--~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
|++++-. +-.++..+..|.+..+.+.|....++++++|-|..++++..
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 8888743 33456667788889999999999999999999999998753
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1e-29 Score=234.58 Aligned_cols=241 Identities=21% Similarity=0.370 Sum_probs=201.5
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECC
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDAL 91 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~ 91 (349)
+.||++.|.+++|.. .+.+|++||.|.++++||..++++++++.||...|.++...+ ..+++||.|.+||+|++.
T Consensus 245 l~GH~g~V~~l~~~~---~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPS---GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred ccCCCCCceeEEEec---CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEecc
Confidence 679999999999974 577999999999999999999999999999999998777654 478899999999999999
Q ss_pred CCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 018860 92 TGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGV 170 (349)
Q Consensus 92 ~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v 170 (349)
++.+++.+. |..+|+++.++ +.++++|+.|++|++||+.+ ......+.+|...|.++.+.+. ..+.+|+.|++|
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTI 394 (537)
T ss_pred CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc--ceEEeeeeccce
Confidence 999999998 99999999997 78999999999999999984 4456778889999999976443 455677777999
Q ss_pred EEEECCCC-ceEEeecCCCCeeEEEEcCCCcEE-EEecCCeEEEEecCCceeeEEEcCC--CceEEeeecCCCCCEEEEe
Q 018860 171 RLWDVRSG-EIVQTLETKSPVTSAEVSQDGRYI-TTADGSTVKFWDANHFGLVKSYNMP--CTIESASLEPKYGNKFVAG 246 (349)
Q Consensus 171 ~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 246 (349)
++||++++ ++++++.++..+.. .....+++| .++.|++|++||...+.+++.+..+ ..+..+.+. ...++++
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v~-~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s 470 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLVS-SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCS 470 (537)
T ss_pred EeecCCchhhhhhhhcCCccccc-ccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEE
Confidence 99999999 89999887655432 223344555 4556999999999999999988874 344444432 4678999
Q ss_pred cCCCeEEEEeCCCCcEEEEe
Q 018860 247 GEDMWVRFFDFHTGNEIACN 266 (349)
Q Consensus 247 ~~d~~i~v~d~~~~~~~~~~ 266 (349)
+.|+.+++||+++++....+
T Consensus 471 ~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 471 SDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ecCCeeEEEecccCchhhhh
Confidence 99999999999999887655
No 71
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.1e-28 Score=227.27 Aligned_cols=262 Identities=15% Similarity=0.220 Sum_probs=192.7
Q ss_pred CCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeE-------------EEeecccCCeEEEEECC-CCCeeEEee
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWI-------------GTFEGHKGAVWSCCLDT-NALRAASAS 80 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~-------------~~~~~h~~~v~~~~~~~-~~~~l~s~s 80 (349)
|-..|....+++ ++..+++++.+..+..|+...+..+ ..+.||++.|++++|+| ++.+|+||+
T Consensus 19 ~~~~i~~~~~~~---d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS 95 (493)
T PTZ00421 19 HFLNVTPSTALW---DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS 95 (493)
T ss_pred ceeccccccccC---CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe
Confidence 334444444443 6566778888777778875433222 24789999999999999 888999999
Q ss_pred CCCeEEEEECCCCC-------EEEEe-ccCCeEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEE
Q 018860 81 ADFSAKVWDALTGD-------VLHSF-EHKHIVRACSFSEDT-HLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTV 151 (349)
Q Consensus 81 ~D~~i~vWd~~~~~-------~~~~~-~~~~~v~~~~~s~~~-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~ 151 (349)
.|++|++||+.++. .+..+ .|...|.+++|+|++ ++|++|+.|++|++||+.+.. ....+..|...|.++
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQITSL 174 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCCCCceEEE
Confidence 99999999997652 33444 488899999999975 799999999999999997643 344566788899999
Q ss_pred EEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCC--CeeEEEEcCCCcEE-EEe----cCCeEEEEecCCce-eeEE
Q 018860 152 AWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKS--PVTSAEVSQDGRYI-TTA----DGSTVKFWDANHFG-LVKS 223 (349)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~----~d~~i~iwd~~~~~-~~~~ 223 (349)
+|+++ +.+|++++.|++|++||+++++.+..+..+. ....+.|.+++..+ +++ .|+.|++||+++.. +...
T Consensus 175 a~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 175 EWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EEECC-CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 99875 5567788888999999999999888776543 23456777776554 443 36899999998754 3333
Q ss_pred EcCC--CceEEeeecCCCCCEEEEec-CCCeEEEEeCCCCcEEEEecC-CCcceeEEEEccCC
Q 018860 224 YNMP--CTIESASLEPKYGNKFVAGG-EDMWVRFFDFHTGNEIACNKG-HHGPVHCVRFSPGG 282 (349)
Q Consensus 224 ~~~~--~~~~~~~~~~~~~~~~~~~~-~d~~i~v~d~~~~~~~~~~~~-h~~~i~~l~~sp~~ 282 (349)
.... ..+....+++ +++++++++ .|+.|++||+.+++.+..... +..++..++|.|..
T Consensus 254 ~~~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 254 VDLDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eccCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 3222 2233344555 467787777 599999999999887766543 45678889998854
No 72
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.6e-30 Score=236.92 Aligned_cols=244 Identities=21% Similarity=0.345 Sum_probs=204.4
Q ss_pred EeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 018860 56 TFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRP 134 (349)
Q Consensus 56 ~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~ 134 (349)
.|+.-+..|..++|+|...+++++=-.|.|++||..=+.+++.|. |.++|+.++|+|..-+++|||.|.+|++|++...
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 345566788999999999999999999999999998888888875 9999999999999999999999999999999754
Q ss_pred CCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCCcEE-EEecCCeEEE
Q 018860 135 DAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYI-TTADGSTVKF 212 (349)
Q Consensus 135 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~d~~i~i 212 (349)
. ....+.+|-..|+++.|+|.-+.+ .+++||.+||||+..+++++..+.++ .-|+|..|+|...++ +++-|.+||+
T Consensus 84 r-clftL~GHlDYVRt~~FHheyPWI-lSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 84 R-CLFTLLGHLDYVRTVFFHHEYPWI-LSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred e-ehhhhccccceeEEeeccCCCceE-EEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 3 455678899999999998766554 57888899999999999999999765 579999999966665 5566999999
Q ss_pred EecCCceeeE------------------EE------------cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcE
Q 018860 213 WDANHFGLVK------------------SY------------NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNE 262 (349)
Q Consensus 213 wd~~~~~~~~------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~ 262 (349)
||+...+..+ .+ .+...+..++|+|. -..+++|++|+.|++|.+...+.
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT-lpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC-cceEEecCCcceeeEEEeccccc
Confidence 9985321110 00 23345778899986 57899999999999999976553
Q ss_pred --EEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 263 --IACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 263 --~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
+.+.++|.+.|.++-|+|..++++|.|+|++|+|||...-
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 5567899999999999999999999999999999998654
No 73
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-30 Score=229.93 Aligned_cols=282 Identities=21% Similarity=0.333 Sum_probs=221.3
Q ss_pred CCCcee---eEEEeecCCCccEEEEEecCCCeEEEeCCC--C----CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeE
Q 018860 15 HSRPVV---DLFYSPITPDGFFLISASKDSSPMLRNGET--G----DWIGTFEGHKGAVWSCCLDTNALRAASASADFSA 85 (349)
Q Consensus 15 h~~~v~---~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~--~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 85 (349)
|...|. .+..++ ++++||.+|++||.|++|+... + .++.+++.|+++|..+....+++.|+|||.|.+|
T Consensus 20 n~~~v~~~~~Lq~da--~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDA--PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccC--CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence 445555 455554 6788999999999999998532 2 2588899999999999999999999999999999
Q ss_pred EEEECCCC--CEEEEec-cCCeEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCCC---------CCceec-cCCCCeEEE
Q 018860 86 KVWDALTG--DVLHSFE-HKHIVRACSF-SEDTHLLLTGGMEKILRIFDLNRPDA---------PPREVD-RSPGSVRTV 151 (349)
Q Consensus 86 ~vWd~~~~--~~~~~~~-~~~~v~~~~~-s~~~~~l~s~~~d~~i~lwd~~~~~~---------~~~~~~-~~~~~i~~~ 151 (349)
++|+...+ -++.++. |...|.++++ .++..++||||.|+.|.+||++.... ....+. ++..++.++
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 99999877 4555554 8999999999 78899999999999999999985421 111222 667788998
Q ss_pred EEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC-CCCeeEEEEcCCCcE-EEEecCCeEEEEecCCceeeEEEcCCCc
Q 018860 152 AWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRY-ITTADGSTVKFWDANHFGLVKSYNMPCT 229 (349)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~~ 229 (349)
+-. +.+.++++|+.++.+++||.++++.+..+.+ ...|..+.+++||.. |+++.|++|++||++.++++.++..+..
T Consensus 178 A~N-~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 178 AMN-QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE 256 (735)
T ss_pred ecC-CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence 855 4457788888889999999999988777765 457999999999955 5677899999999999999998876544
Q ss_pred -eEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 230 -IESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 230 -~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
+-++..+|. =.++++|+.|+.|..=|+++......+=....+|..+..+...+-+-+++.|+.|+-|...
T Consensus 257 ~VWaL~~~~s-f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 257 GVWALQSSPS-FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ceEEEeeCCC-cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 445554543 5789999999999999998854332222245677778777555555778899999999754
No 74
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=5.5e-29 Score=202.58 Aligned_cols=286 Identities=20% Similarity=0.315 Sum_probs=224.5
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCC------eE---------EEeecccCCeEEEEECC-CCCe
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGD------WI---------GTFEGHKGAVWSCCLDT-NALR 75 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~------~~---------~~~~~h~~~v~~~~~~~-~~~~ 75 (349)
.+-|.+.|+.+...| ..|+|++||++||.|.+||.++.. ++ ..-.+|+-.|.++-|-| |...
T Consensus 39 ~r~HgGsvNsL~id~--tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDL--TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred eccCCCccceeeecc--ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 367999999998887 479999999999999999976532 11 11247888898888755 5567
Q ss_pred eEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCC---CCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEE
Q 018860 76 AASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSED---THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVA 152 (349)
Q Consensus 76 l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~ 152 (349)
+.|+|.|.++||||.++.+....|..++.|++-+++|- ..+||+|..|..||+.|+..+ .....+.+|.+.|.++.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVE 195 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEE
Confidence 88999999999999999999999999999999999984 457888999999999999764 44678999999999999
Q ss_pred EecCCCeEEEEeeCCCeEEEEECCCC-ceEEeec---------------CCCCeeEEEEcCCCcEE-EEecCCeEEEEec
Q 018860 153 WLHSDQTILSTCTDMGGVRLWDVRSG-EIVQTLE---------------TKSPVTSAEVSQDGRYI-TTADGSTVKFWDA 215 (349)
Q Consensus 153 ~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~---------------~~~~v~~~~~~~~~~~l-~~~~d~~i~iwd~ 215 (349)
|+|....+|++++.||.||+||+|.. .+...+. +.+.++.+++..++.++ +++.|..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 99999999999999999999999864 3333221 22457889999999776 5677999999998
Q ss_pred CCceee-EEEcCCC--ce--EEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecC
Q 018860 216 NHFGLV-KSYNMPC--TI--ESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSE 290 (349)
Q Consensus 216 ~~~~~~-~~~~~~~--~~--~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~ 290 (349)
.+++.. +.+.-.+ +. ..+.....+...|+---.++.+.++++-+++.+..+..|-..|.|.+|-|+-+.+.+|+.
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~ 355 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM 355 (397)
T ss_pred ccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc
Confidence 765421 1111000 00 011111112334444445689999999999999999999999999999999999999999
Q ss_pred CCCEEEecCC
Q 018860 291 DGTIRIWQTG 300 (349)
Q Consensus 291 Dg~v~vW~~~ 300 (349)
|+.+..|.+.
T Consensus 356 d~ni~~w~p~ 365 (397)
T KOG4283|consen 356 NGNIYMWSPA 365 (397)
T ss_pred CCcccccccc
Confidence 9999999874
No 75
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.2e-29 Score=203.80 Aligned_cols=270 Identities=19% Similarity=0.321 Sum_probs=204.0
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC-CCeE-EEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECC
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET-GDWI-GTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDAL 91 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~ 91 (349)
.-.+.|.+++|||. ...+|+++|.|+++|+|+.+. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~--~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQ--ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccc--cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 46789999999993 445777999999999999876 3332 4455699999999999999999999999999999999
Q ss_pred CCCEEEEeccCCeEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 018860 92 TGDVLHSFEHKHIVRACSFSEDTH--LLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG 169 (349)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 169 (349)
+++....-.|..+|+++.|-+... .|+|||+|+++|.||++.+.... ....++.+.++.... . +++.+..++.
T Consensus 103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~--t~~LPeRvYa~Dv~~--p-m~vVata~r~ 177 (347)
T KOG0647|consen 103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA--TLQLPERVYAADVLY--P-MAVVATAERH 177 (347)
T ss_pred CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee--eeeccceeeehhccC--c-eeEEEecCCc
Confidence 999888888999999999987665 89999999999999998554321 223456677665432 2 3344445589
Q ss_pred EEEEECCCCceE-EeecC--CCCeeEEEEcCCCc-EEEEecCCeEEEEecCCceeeEEE-----c----CCC---ceEEe
Q 018860 170 VRLWDVRSGEIV-QTLET--KSPVTSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSY-----N----MPC---TIESA 233 (349)
Q Consensus 170 v~vwd~~~~~~~-~~~~~--~~~v~~~~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~-----~----~~~---~~~~~ 233 (349)
|.+|+++++... +..+. +-.++++++.++.. ++.++-.|.+-+..++...+...| . ... .+..+
T Consensus 178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 999999876432 22222 33467888777654 456666888777766553221111 1 111 25678
Q ss_pred eecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEE-EecCC
Q 018860 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYA-SGSED 291 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~-sgs~D 291 (349)
+|+|. -..|+++|.||+..+||-.....++..+.|..+|++.+|+.+|.++| ..|.|
T Consensus 258 ~FhP~-hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 258 AFHPV-HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred Eeecc-cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 99995 56899999999999999988888888889999999999999999886 34443
No 76
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=7.6e-28 Score=223.02 Aligned_cols=244 Identities=16% Similarity=0.270 Sum_probs=181.3
Q ss_pred EecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCC-CCeeEEeeCCCeEEEEECCCCC--------EEEEe-ccCCeEE
Q 018860 37 ASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTN-ALRAASASADFSAKVWDALTGD--------VLHSF-EHKHIVR 106 (349)
Q Consensus 37 ~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~--------~~~~~-~~~~~v~ 106 (349)
|+.++.+++|+......+..+.+|.+.|.+++|+|+ +.+|+|||.|++|+|||+.++. .+..+ .|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567788999987777788899999999999999996 7899999999999999997542 12233 4888999
Q ss_pred EEEEcCCCCE-EEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec
Q 018860 107 ACSFSEDTHL-LLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE 185 (349)
Q Consensus 107 ~~~~s~~~~~-l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 185 (349)
+++|+|++.. |++++.|++|++||+.+.... ..+ .+...+.++.|++.+. +|++++.|++|++||+++++.+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~-~~i-~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA-FQI-NMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEE-EEE-ecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEe
Confidence 9999998875 578999999999999765432 222 2557899999987655 55666677999999999999888876
Q ss_pred CCC-Cee-----EEEEcCCCcEE-EEecC----CeEEEEecCC-ceeeEEEcCCCc--eEEeeecCCCCCEEEEecCCCe
Q 018860 186 TKS-PVT-----SAEVSQDGRYI-TTADG----STVKFWDANH-FGLVKSYNMPCT--IESASLEPKYGNKFVAGGEDMW 251 (349)
Q Consensus 186 ~~~-~v~-----~~~~~~~~~~l-~~~~d----~~i~iwd~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~ 251 (349)
.+. .+. ...+++++.++ +++.+ ++|+|||++. ..++....+... .....+.+..+.+|++|..|+.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 543 222 22345776665 44544 4799999995 455655544332 2223444556788999999999
Q ss_pred EEEEeCCCCcEEEEec-CCCcceeEEEEccCCC
Q 018860 252 VRFFDFHTGNEIACNK-GHHGPVHCVRFSPGGE 283 (349)
Q Consensus 252 i~v~d~~~~~~~~~~~-~h~~~i~~l~~sp~~~ 283 (349)
||+|++..+.....-. .+..++.+++|.|...
T Consensus 287 Ir~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 287 CRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 9999998765322111 2567889999999753
No 77
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.5e-27 Score=183.98 Aligned_cols=278 Identities=19% Similarity=0.305 Sum_probs=217.9
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCC------CC------CeE---EEeecccCCeEEEEECCCCCeeEE
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGE------TG------DWI---GTFEGHKGAVWSCCLDTNALRAAS 78 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~------~~------~~~---~~~~~h~~~v~~~~~~~~~~~l~s 78 (349)
..+-.|++++|.| .|.+-+.||...+.||-.+. .+ .+. +--+.|++.|+|++|+|.|+.|+|
T Consensus 30 ~dsqairav~fhp---~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 30 EDSQAIRAVAFHP---AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred cchhheeeEEecC---CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 4556788999998 78899999999998885321 11 111 222569999999999999999999
Q ss_pred eeCCCeEEEEECCCCCE------EEEeccCCeEEEEEEcC----CCCEEEEEe-CCCeEEEEECCCCCCCCceeccCCCC
Q 018860 79 ASADFSAKVWDALTGDV------LHSFEHKHIVRACSFSE----DTHLLLTGG-MEKILRIFDLNRPDAPPREVDRSPGS 147 (349)
Q Consensus 79 ~s~D~~i~vWd~~~~~~------~~~~~~~~~v~~~~~s~----~~~~l~s~~-~d~~i~lwd~~~~~~~~~~~~~~~~~ 147 (349)
|+.|++||+-..+...+ +..--|.+.|+.++|-. .+.+|++++ .|-.|.+-|.... .....+.+|.+.
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~~~~a~sghtgh 185 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-QGFHALSGHTGH 185 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-CcceeecCCccc
Confidence 99999999987654332 22223888999999953 356777766 4556666666543 345678899999
Q ss_pred eEEE-EEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC--------CCCeeEEEEcCCCcEEEEe-cCCeEEEEecCC
Q 018860 148 VRTV-AWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET--------KSPVTSAEVSQDGRYITTA-DGSTVKFWDANH 217 (349)
Q Consensus 148 i~~~-~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~ 217 (349)
|.++ .| ++.++++++.|.+||+||+|-..++.++.. .+.|.++++.|.|++|+++ .|....+||++.
T Consensus 186 ilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 186 ILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred EEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 9887 45 456788999999999999999888887742 1468899999999999887 489999999999
Q ss_pred ceeeEEE-cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCC--c--EEEEecCCCcceeEEEEccCCCeEEEecCCC
Q 018860 218 FGLVKSY-NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTG--N--EIACNKGHHGPVHCVRFSPGGESYASGSEDG 292 (349)
Q Consensus 218 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~--~--~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg 292 (349)
++.++.+ ++...+.++.|+|. ..++++++.|..|++-|+... + .+.....|...+-.+.|+|..-.++|.|.|+
T Consensus 263 ~r~iq~f~phsadir~vrfsp~-a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred CceeeeeCCCccceeEEEeCCC-ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 9998776 45567889999995 789999999999999998531 1 1233456888888999999998899999999
Q ss_pred CEEEecC
Q 018860 293 TIRIWQT 299 (349)
Q Consensus 293 ~v~vW~~ 299 (349)
++.+|-.
T Consensus 342 t~tlwa~ 348 (350)
T KOG0641|consen 342 TATLWAL 348 (350)
T ss_pred eEEEecc
Confidence 9999965
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.7e-28 Score=199.37 Aligned_cols=241 Identities=15% Similarity=0.234 Sum_probs=195.8
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCC--eeEEeeCCCeEEEE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNAL--RAASASADFSAKVW 88 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vW 88 (349)
.+..|.+++++++.+ |.|++|||.|-+|+|||......+..+-.|++.|+++.|.+.-. .|++|+.||.|-+|
T Consensus 38 ~~~aH~~sitavAVs-----~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS-----GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec-----ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 356899999999986 78999999999999999998888889999999999999987654 79999999999999
Q ss_pred ECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCC
Q 018860 89 DALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDM 167 (349)
Q Consensus 89 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 167 (349)
+...-++++.++ |...|+.++.+|.+++.++.+.|+.+|+|++-.++.....-..+ .-..+.|+|.+.++.+.+.
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~-- 188 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGR-- 188 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEec--
Confidence 999888888886 88889999999999999999999999999986654332222222 2344889988887776554
Q ss_pred CeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEc-CCCceEEee-ecCCCCCEEEE
Q 018860 168 GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYN-MPCTIESAS-LEPKYGNKFVA 245 (349)
Q Consensus 168 g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~ 245 (349)
..|-+|.+.+.+....+.....+.++.|...+.++++++|+.|++||.....+...+. ++.++-.+. +...++.++++
T Consensus 189 ~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT 268 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT 268 (362)
T ss_pred cEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence 5899999988777666665555677778777788888899999999999766655543 445565555 33334678999
Q ss_pred ecCCCeEEEEeCCCC
Q 018860 246 GGEDMWVRFFDFHTG 260 (349)
Q Consensus 246 ~~~d~~i~v~d~~~~ 260 (349)
++.||.|++||+...
T Consensus 269 aSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 269 ASSDGFIKVWDIDME 283 (362)
T ss_pred eccCceEEEEEcccc
Confidence 999999999998764
No 79
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.4e-28 Score=199.15 Aligned_cols=265 Identities=17% Similarity=0.243 Sum_probs=202.4
Q ss_pred CCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCC
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGD 94 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~ 94 (349)
-++.|+.+.|+| .+.+|+.+|.||++++|+....++...++ |..++.+++|.++. .+++|+.||.||++|++++.
T Consensus 12 P~d~IS~v~f~~---~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSP---SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcC---cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc-eEEEeccCceEEEEEecCCc
Confidence 467899999996 56678889999999999988776655554 88999999999854 58999999999999999998
Q ss_pred EEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 018860 95 VLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWD 174 (349)
Q Consensus 95 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd 174 (349)
....-.|..+|+++.+++....+++||+|++|++||.+.... .. .....+.|.++.. .+..+++ |..+..|.+||
T Consensus 87 ~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~-~~-~~d~~kkVy~~~v--~g~~LvV-g~~~r~v~iyD 161 (323)
T KOG1036|consen 87 EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV-VG-TFDQGKKVYCMDV--SGNRLVV-GTSDRKVLIYD 161 (323)
T ss_pred ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc-cc-ccccCceEEEEec--cCCEEEE-eecCceEEEEE
Confidence 888888999999999999989999999999999999875221 11 1222346777764 3445554 44558999999
Q ss_pred CCCCceEEeec---CCCCeeEEEEcCCCc-EEEEecCCeE--EEEecCCceeeEEEcC------------CCceEEeeec
Q 018860 175 VRSGEIVQTLE---TKSPVTSAEVSQDGR-YITTADGSTV--KFWDANHFGLVKSYNM------------PCTIESASLE 236 (349)
Q Consensus 175 ~~~~~~~~~~~---~~~~v~~~~~~~~~~-~l~~~~d~~i--~iwd~~~~~~~~~~~~------------~~~~~~~~~~ 236 (349)
+|+........ .+-.+.++++.|++. +++++-+|.| ..+|.......+.+.. -.++.+++|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 99865433221 233578899999654 4555557754 4566552211122211 1246789999
Q ss_pred CCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecC
Q 018860 237 PKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSE 290 (349)
Q Consensus 237 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~ 290 (349)
|- ...|++|+.||.|-+||..+.+.+..+......|.+++|+.+|..||.++.
T Consensus 242 p~-~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 242 PI-HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cc-cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 86 678999999999999999999998888777788999999999999998763
No 80
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3.6e-28 Score=202.94 Aligned_cols=248 Identities=16% Similarity=0.139 Sum_probs=203.1
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEE
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAK 86 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 86 (349)
....++.||++.|+++.||. +|.|||+|..+|.++||...++.....+..--..+.-+.|+|.+..|+.|+.||.+.
T Consensus 97 e~~~eltgHKDSVt~~~Fsh---dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 97 EFAGELTGHKDSVTCCSFSH---DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred cceeEecCCCCceEEEEEcc---CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence 35677899999999999996 999999999999999999999988888877777888899999999999999999999
Q ss_pred EEECCCC-CEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCcee--------------------c---
Q 018860 87 VWDALTG-DVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREV--------------------D--- 142 (349)
Q Consensus 87 vWd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~--------------------~--- 142 (349)
+|.+.++ .+.....|..++++=.|.|+|++++++..|++|++|++.+.....+.- .
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 9999984 444445688999999999999999999999999999987543211000 0
Q ss_pred ---------------------------cCCCCeEEEEEecCC--CeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEE
Q 018860 143 ---------------------------RSPGSVRTVAWLHSD--QTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSA 193 (349)
Q Consensus 143 ---------------------------~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~ 193 (349)
.+...+.++.+.|.. -.++++|+-||+|.|||+...+..+.+++..+|..+
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL 333 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence 001111222222222 246778888999999999999998999999999999
Q ss_pred EEcCCCcEEEEecCCeEEEEecCCceeeEEEcC-CCceEEeeecCCCCCEEEEecCCCeEEEEeCC
Q 018860 194 EVSQDGRYITTADGSTVKFWDANHFGLVKSYNM-PCTIESASLEPKYGNKFVAGGEDMWVRFFDFH 258 (349)
Q Consensus 194 ~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 258 (349)
.|.++..+++++.+|.|+.||.|++++...+.- ...+..+++.| +.+++++++.|++.+||++.
T Consensus 334 ~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999966677888899999999999999887754 45678888888 48899999999999999864
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.1e-28 Score=212.51 Aligned_cols=283 Identities=19% Similarity=0.255 Sum_probs=214.4
Q ss_pred eeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCC----eEEEee-cccCCeEEEEECCCCCeeEEeeCCCe
Q 018860 10 LVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGD----WIGTFE-GHKGAVWSCCLDTNALRAASASADFS 84 (349)
Q Consensus 10 ~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~----~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~ 84 (349)
+.+.+|++.|.++++.| .|..++|||.|-++++||++.-. .-+.+. .-..+|.++.|++.+..|+..+....
T Consensus 161 i~l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EeccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 44679999999999987 79999999999999999976421 122222 23446899999999999999998899
Q ss_pred EEEEECCCCCEEEEe-------------ccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCceec-----cCC
Q 018860 85 AKVWDALTGDVLHSF-------------EHKHIVRACSFSED-THLLLTGGMEKILRIFDLNRPDAPPREVD-----RSP 145 (349)
Q Consensus 85 i~vWd~~~~~~~~~~-------------~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~~~~~~~-----~~~ 145 (349)
++|+|-...+..... .|-..+++.+|+|. .+.++|++.|+++|+|+++..+.....+. +..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 999997655444333 26678999999996 56789999999999999987665433222 223
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce--EEeec--C--CCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCc
Q 018860 146 GSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEI--VQTLE--T--KSPVTSAEVSQDGRYITT-ADGSTVKFWDANHF 218 (349)
Q Consensus 146 ~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~~--~--~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~ 218 (349)
-.+++++|++++.. |+++..||.|.+||.++... ...+. | ...++++.|+++|++|++ +.|+++++||+++.
T Consensus 318 v~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred cCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 35789999876555 66666779999999865322 22221 2 347999999999998766 77999999999986
Q ss_pred e-eeEEE-cC--CCceEEeeecCCCCCEEEEec------CCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEe
Q 018860 219 G-LVKSY-NM--PCTIESASLEPKYGNKFVAGG------EDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASG 288 (349)
Q Consensus 219 ~-~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~------~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sg 288 (349)
+ ++... .. ......++|+|+ .+.+++|+ ..+.+.+||..+-+.+..+.--+..|..+.|+|.-+.|..|
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd-~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPD-DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCC-ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 4 33222 11 122346788885 67777775 35689999999988888887778889999999998888889
Q ss_pred cCCCCEEEe
Q 018860 289 SEDGTIRIW 297 (349)
Q Consensus 289 s~Dg~v~vW 297 (349)
+.||+++++
T Consensus 476 sgdG~~~vy 484 (641)
T KOG0772|consen 476 SGDGTAHVY 484 (641)
T ss_pred cCCCceEEE
Confidence 999999985
No 82
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8e-30 Score=212.65 Aligned_cols=243 Identities=21% Similarity=0.408 Sum_probs=202.4
Q ss_pred CCeEEEeecccCCeEEEEECCCC-CeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEE
Q 018860 51 GDWIGTFEGHKGAVWSCCLDTNA-LRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRI 128 (349)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~l 128 (349)
..++..+.||.+.|.|++=+|.. ..++||+.||.|++||+.+..++.++. |.+.|+.+++.. +.++++|+|++++.
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 34678889999999999999987 679999999999999999999988886 888999999987 67899999999999
Q ss_pred EECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCC-CeeEEEEcCCCcE-EE-Ee
Q 018860 129 FDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKS-PVTSAEVSQDGRY-IT-TA 205 (349)
Q Consensus 129 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~-l~-~~ 205 (349)
|.+..+ +.+.+.+ ...+..+.- +.....++||+. .|.|||.....+++.+..+. .+.++.|+|-... |+ |+
T Consensus 134 wk~~~~--p~~tilg-~s~~~gIdh-~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 134 WKIDGP--PLHTILG-KSVYLGIDH-HRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred eeccCC--cceeeec-ccccccccc-ccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence 998653 2232222 233444442 234567788875 79999998888888887654 5889999997644 33 45
Q ss_pred cCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCc-EEEEecCCCcceeEEEEccCCCe
Q 018860 206 DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGN-EIACNKGHHGPVHCVRFSPGGES 284 (349)
Q Consensus 206 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~h~~~i~~l~~sp~~~~ 284 (349)
.|+.|.+||++...+++..........++|+| ..-.|++|.+|..++.||++..+ .+...++|.+.|.+++|||.|+-
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred cCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch
Confidence 79999999999999999888888888999999 68889999999999999998755 46778999999999999999999
Q ss_pred EEEecCCCCEEEecCCCC
Q 018860 285 YASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 285 l~sgs~Dg~v~vW~~~~~ 302 (349)
++|||.|.+|+|+.+...
T Consensus 287 fvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred hccccccceEEEeecCCC
Confidence 999999999999998654
No 83
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=5.9e-27 Score=217.13 Aligned_cols=223 Identities=13% Similarity=0.229 Sum_probs=173.9
Q ss_pred EeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCC-------CCceeccCCCCe
Q 018860 78 SASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSED-THLLLTGGMEKILRIFDLNRPDA-------PPREVDRSPGSV 148 (349)
Q Consensus 78 s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~-------~~~~~~~~~~~i 148 (349)
+|+.++.|++|+......+..+. |...|.+++|+|+ +++|+||+.|++|++||+..... +...+.+|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 46789999999987766666654 8889999999996 78999999999999999975322 122457788999
Q ss_pred EEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCC
Q 018860 149 RTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMP 227 (349)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 227 (349)
.+++|+|.+..++++++.|++|++||+++++.+..+.+...+.++.|+|+|.+|+++ .|+.|++||++++..+..+..+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 999999988888888888999999999999887777777789999999999988765 5899999999999887776543
Q ss_pred Cc-eEEe-----eecCCCCCEEEEecCC----CeEEEEeCCC-CcEEEEec--CCCcceeEEEEccCCCeEEEecCCCCE
Q 018860 228 CT-IESA-----SLEPKYGNKFVAGGED----MWVRFFDFHT-GNEIACNK--GHHGPVHCVRFSPGGESYASGSEDGTI 294 (349)
Q Consensus 228 ~~-~~~~-----~~~~~~~~~~~~~~~d----~~i~v~d~~~-~~~~~~~~--~h~~~i~~l~~sp~~~~l~sgs~Dg~v 294 (349)
.. .... .|.+ ++.++++++.| +.|++||++. ++.+.... .+.+.+......+++.++++|+.|++|
T Consensus 209 ~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 32 2111 2234 46788887766 4799999985 45554433 334444445556678899999999999
Q ss_pred EEecCCC
Q 018860 295 RIWQTGP 301 (349)
Q Consensus 295 ~vW~~~~ 301 (349)
++|++..
T Consensus 288 r~~e~~~ 294 (568)
T PTZ00420 288 RYYQHSL 294 (568)
T ss_pred EEEEccC
Confidence 9999854
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=5.5e-28 Score=205.94 Aligned_cols=243 Identities=19% Similarity=0.269 Sum_probs=201.5
Q ss_pred cceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEE
Q 018860 8 VPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKV 87 (349)
Q Consensus 8 ~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~v 87 (349)
...+|.||+..|+.+.|+| +...++++|.|..|++|...........+.|..+|+.+..+|.+.||++++.|+++-+
T Consensus 253 ~l~~~~Gh~kki~~v~~~~---~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHK---DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred hhhhccCcceEEEEEEecc---chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence 3456789999999999997 6778999999999999998777788888999999999999999999999999999999
Q ss_pred EECCCCCEEEEeccC---CeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEe
Q 018860 88 WDALTGDVLHSFEHK---HIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 88 Wd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 164 (349)
.|+.++..+....+. -.+++.+|||||.++.+|..|+.+++||+..+. ....+.+|.++|.++.|+ .++++++++
T Consensus 330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~Fs-ENGY~Lat~ 407 (506)
T KOG0289|consen 330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFS-ENGYWLATA 407 (506)
T ss_pred EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEec-cCceEEEEE
Confidence 999999888777664 248899999999999999999999999998765 456788899999999997 578899999
Q ss_pred eCCCeEEEEECCCCceEEeecCC--CCeeEEEEcCCCcEEEEecCCeEEEEecC----CceeeEEEcCCCce-EEeeecC
Q 018860 165 TDMGGVRLWDVRSGEIVQTLETK--SPVTSAEVSQDGRYITTADGSTVKFWDAN----HFGLVKSYNMPCTI-ESASLEP 237 (349)
Q Consensus 165 ~~dg~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~d~~i~iwd~~----~~~~~~~~~~~~~~-~~~~~~~ 237 (349)
.+|+.|++||+|.-+..+++... .++.++.|.+.|.+|..+ +..+++|-.. .+.++..+...... ..+.|.
T Consensus 408 add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg- 485 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG- 485 (506)
T ss_pred ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehhhhcccccceeeec-
Confidence 99999999999988877777543 469999999999998776 4445555443 45566555544433 334444
Q ss_pred CCCCEEEEecCCCeEEEEeC
Q 018860 238 KYGNKFVAGGEDMWVRFFDF 257 (349)
Q Consensus 238 ~~~~~~~~~~~d~~i~v~d~ 257 (349)
...+++++++.|..++++.+
T Consensus 486 ~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 486 EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceEEeeccchhheEEeec
Confidence 45788999999999888753
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-28 Score=210.40 Aligned_cols=237 Identities=20% Similarity=0.293 Sum_probs=196.2
Q ss_pred CCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCC-CeeEEeeCCCeEEEEECCCC
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA-LRAASASADFSAKVWDALTG 93 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~ 93 (349)
-++.|+++.|-. ||++|++|...|.++++|..+..-++.+++|+.+|..+.|+|++ +.|++|+.|+.+++||+.+.
T Consensus 67 Fk~~v~s~~fR~---DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 67 FKDVVYSVDFRS---DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred hccceeEEEeec---CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 357788999985 99999999999999999977666789999999999999999854 56778999999999999988
Q ss_pred CEEEEe-ccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 018860 94 DVLHSF-EHKHIVRACSFSED-THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVR 171 (349)
Q Consensus 94 ~~~~~~-~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~ 171 (349)
.....+ .|.+.|++.+|+|. +.+++|||.||+||+||++.......+ ..|..+|..+.+.|+++.++.+|+ +.|+
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~iasAgG--n~vk 220 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSLIASAGG--NSVK 220 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCEEEEcCC--CeEE
Confidence 764343 49999999999995 568899999999999999876533333 346778999999987776655544 5899
Q ss_pred EEECCCCc-eEEeec-CCCCeeEEEEcCCCcE-EEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecC
Q 018860 172 LWDVRSGE-IVQTLE-TKSPVTSAEVSQDGRY-ITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGE 248 (349)
Q Consensus 172 vwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
|||+.+|. .+..+. |+..|+|+++..++.. ++++-|+.+++||+.+++.+..+.++.++.+++++|. ++.++.|..
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d-d~t~viGms 299 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD-DQTVVIGMS 299 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCC-CceEEEecc
Confidence 99998654 444444 6778999999988755 5566799999999999999999999999999999984 788999999
Q ss_pred CCeEEEEeCC
Q 018860 249 DMWVRFFDFH 258 (349)
Q Consensus 249 d~~i~v~d~~ 258 (349)
||.+-+-+..
T Consensus 300 nGlv~~rr~~ 309 (487)
T KOG0310|consen 300 NGLVSIRRRE 309 (487)
T ss_pred cceeeeehhh
Confidence 9988766443
No 86
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.8e-28 Score=203.71 Aligned_cols=240 Identities=23% Similarity=0.337 Sum_probs=191.6
Q ss_pred cccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEE-eccCCeEEEEEEcC---CCCEEEEEeCCCeEEEEECCCC
Q 018860 59 GHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHS-FEHKHIVRACSFSE---DTHLLLTGGMEKILRIFDLNRP 134 (349)
Q Consensus 59 ~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~-~~~~~~v~~~~~s~---~~~~l~s~~~d~~i~lwd~~~~ 134 (349)
.|.+.|.++... ++.|+||+.||.+|+||.. |++.+. ..|.+++.+++|.- ....++++|.|.++++|..+.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 377888777776 6789999999999999986 555554 56999999888753 2346999999999999998765
Q ss_pred CCCCc---eeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC-------------------------CceEEeec-
Q 018860 135 DAPPR---EVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS-------------------------GEIVQTLE- 185 (349)
Q Consensus 135 ~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-------------------------~~~~~~~~- 185 (349)
..... ...+|...|.++...+ ++..+++++.|.+|++|+..+ +.++.++.
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 43222 2348999999998765 455666788889999999221 11223333
Q ss_pred CCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCc---E
Q 018860 186 TKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGN---E 262 (349)
Q Consensus 186 ~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~ 262 (349)
|..+|.++.|++.+..++++.|.+|+.||+.++..+.....+..+.++...|. .+++++|+.|..||+||.+++. .
T Consensus 259 Ht~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~-~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 259 HTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPL-SKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred cccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccc-cceeeecCCCCceeecCCCCCCCcee
Confidence 34689999999977778889999999999999999888888888888998884 7899999999999999998754 2
Q ss_pred EEEecCCCcceeEEEEccCCCe-EEEecCCCCEEEecCCCCC
Q 018860 263 IACNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQTGPVT 303 (349)
Q Consensus 263 ~~~~~~h~~~i~~l~~sp~~~~-l~sgs~Dg~v~vW~~~~~~ 303 (349)
.+.+.+|+++|.++.|+|...+ |+|||.|+++++||+....
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 4678899999999999998654 7899999999999997543
No 87
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=6.3e-28 Score=206.83 Aligned_cols=258 Identities=22% Similarity=0.314 Sum_probs=201.7
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCC----------eEEEeecccCCeEEEEECCC-CCeeEEeeCC
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGD----------WIGTFEGHKGAVWSCCLDTN-ALRAASASAD 82 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~----------~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D 82 (349)
-|.+.|+.+.|-|..|. ++++.+..+.+.|||..... +-..+.||++.=+.++|++. ...|++++.|
T Consensus 122 ~h~gEVnRaRymPQnp~--iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPN--IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCc--EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 49999999999996554 88999999999999975432 12378899998888999874 4479999999
Q ss_pred CeEEEEECCCCCE-------EEEe-ccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCC-CCCCCceeccCCCCeEEEE
Q 018860 83 FSAKVWDALTGDV-------LHSF-EHKHIVRACSFSED-THLLLTGGMEKILRIFDLNR-PDAPPREVDRSPGSVRTVA 152 (349)
Q Consensus 83 ~~i~vWd~~~~~~-------~~~~-~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~-~~~~~~~~~~~~~~i~~~~ 152 (349)
++|++||+..... ...+ .|...|..++|++- ..++++++.|+.+.|||+++ ...+......|.+++.+++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 9999999875432 1222 48889999999994 56788999999999999986 4455667788999999999
Q ss_pred EecCCCeEEEEeeCCCeEEEEECCCC-ceEEeecC-CCCeeEEEEcCCCcE-EE-EecCCeEEEEecCCceeeEEEcCCC
Q 018860 153 WLHSDQTILSTCTDMGGVRLWDVRSG-EIVQTLET-KSPVTSAEVSQDGRY-IT-TADGSTVKFWDANHFGLVKSYNMPC 228 (349)
Q Consensus 153 ~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~-~~~v~~~~~~~~~~~-l~-~~~d~~i~iwd~~~~~~~~~~~~~~ 228 (349)
|.|.+..+||+|+.|++|++||+|+- +++++++. ...|..+.|+|...- |+ ++.|+.+.+||+..-...+.
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~----- 354 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS----- 354 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-----
Confidence 99999999999999999999999974 45677765 457999999997643 33 34589999999864322111
Q ss_pred ceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCe-EEEecCCCCEEEecCCC
Q 018860 229 TIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQTGP 301 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~-l~sgs~Dg~v~vW~~~~ 301 (349)
+.+ +.| ...+.+....||...|..+.|+|+..+ ++|++.|+.+.||+...
T Consensus 355 --------~ed-------a~d--------gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 355 --------PED-------AED--------GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred --------hhh-------hcc--------CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 000 001 123456677899999999999999886 67999999999998763
No 88
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=8e-26 Score=198.81 Aligned_cols=267 Identities=16% Similarity=0.166 Sum_probs=198.8
Q ss_pred cEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCee-EEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEE
Q 018860 32 FFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRA-ASASADFSAKVWDALTGDVLHSFEHKHIVRACSF 110 (349)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~ 110 (349)
..++|++.|+.+++|+..+++.+..+.+|.. +.+++|++++..+ ++++.|+.|++||..+++.+..+.....+..++|
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 4688999999999999999999999987754 6789999999876 5677899999999999888777654444678899
Q ss_pred cCCCCEEEEE-eCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCC
Q 018860 111 SEDTHLLLTG-GMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSP 189 (349)
Q Consensus 111 s~~~~~l~s~-~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 189 (349)
+|+++.++++ +.++.+++||+.+... ...+. ....+..+.|+|++..++++..+...+.+||.++++....+.....
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR 158 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC
Confidence 9999877654 5689999999975332 11222 2234577888876666555444434678889998887665544445
Q ss_pred eeEEEEcCCCcEEE-Ee-cCCeEEEEecCCceeeEEEcCC--------CceEEeeecCCCCCE-EEEecCCCeEEEEeCC
Q 018860 190 VTSAEVSQDGRYIT-TA-DGSTVKFWDANHFGLVKSYNMP--------CTIESASLEPKYGNK-FVAGGEDMWVRFFDFH 258 (349)
Q Consensus 190 v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~d~~i~v~d~~ 258 (349)
...+.|+|+++++. ++ .++.|.+||+.+.+.+..+... .....+.++|. +++ +++.+.++.+.+||+.
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d-g~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD-GKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC-CCEEEEEcCCCCeEEEEECC
Confidence 57789999998764 44 4899999999988776654321 11234667775 555 4555667789999999
Q ss_pred CCcEEEEecCCCcceeEEEEccCCCeEEEe-cCCCCEEEecCCCCC
Q 018860 259 TGNEIACNKGHHGPVHCVRFSPGGESYASG-SEDGTIRIWQTGPVT 303 (349)
Q Consensus 259 ~~~~~~~~~~h~~~i~~l~~sp~~~~l~sg-s~Dg~v~vW~~~~~~ 303 (349)
+++...... +...+.+++|+|++++|+++ +.+|+|++||+....
T Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 238 TYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 888765543 34578999999999999876 569999999987543
No 89
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-26 Score=189.38 Aligned_cols=246 Identities=20% Similarity=0.338 Sum_probs=199.8
Q ss_pred eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccC-CeEEEEEEcCCCCEEEEEeC--CCeEEEE
Q 018860 53 WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHK-HIVRACSFSEDTHLLLTGGM--EKILRIF 129 (349)
Q Consensus 53 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~--d~~i~lw 129 (349)
..+.++.-...|.++.|+++|..+++++.|.+++|+|..+++.++++..+ ..+..++|....+.++.++. |.+||..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 34456556778999999999999999999999999999999999998744 57888888776666666664 8999999
Q ss_pred ECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecC-C
Q 018860 130 DLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADG-S 208 (349)
Q Consensus 130 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~ 208 (349)
++... ...+.+.+|...|.++..+|.++.++ +++.|++||+||+|..+++..+..... ..++|.|+|.+++++.+ .
T Consensus 86 sl~dN-kylRYF~GH~~~V~sL~~sP~~d~Fl-S~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 86 SLHDN-KYLRYFPGHKKRVNSLSVSPKDDTFL-SSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EeecC-ceEEEcCCCCceEEEEEecCCCCeEE-ecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCC
Confidence 99754 45788999999999999999887666 555669999999998887766654332 34789999999887764 4
Q ss_pred eEEEEecCCc--eeeEEEcCC----CceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcce---eEEEEc
Q 018860 209 TVKFWDANHF--GLVKSYNMP----CTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPV---HCVRFS 279 (349)
Q Consensus 209 ~i~iwd~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i---~~l~~s 279 (349)
.|++||+|.. .+...+... +....+.|+| +|+.++.++..+.+++.|.-+|..+..+.++...- -+.+|+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 9999999975 355555443 4567888888 59999999999999999999999888877664432 567899
Q ss_pred cCCCeEEEecCCCCEEEecCCCC
Q 018860 280 PGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 280 p~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
|+++++++|+.||+|.+|++..+
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCC
Confidence 99999999999999999998544
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=4.9e-27 Score=220.40 Aligned_cols=291 Identities=16% Similarity=0.259 Sum_probs=225.3
Q ss_pred cccceeeccCCCceeeEEEeecCCCccEEEEEe--cCCCeEEEeCCC------------CCeEEEeecccCCeEEEEECC
Q 018860 6 IAVPLVCHGHSRPVVDLFYSPITPDGFFLISAS--KDSSPMLRNGET------------GDWIGTFEGHKGAVWSCCLDT 71 (349)
Q Consensus 6 ~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s--~d~~i~iw~~~~------------~~~~~~~~~h~~~v~~~~~~~ 71 (349)
+-+|-=+..|.+.|..|..+| +|..+++|+ .|+.++||+.+. .+.+-+...|.+.|.|+.|++
T Consensus 3 l~kp~wv~H~~~~IfSIdv~p---dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~ 79 (942)
T KOG0973|consen 3 LLKPTWVNHNEKSIFSIDVHP---DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP 79 (942)
T ss_pred eecccccccCCeeEEEEEecC---CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC
Confidence 334433344557788887776 999999999 999999997432 233556678999999999999
Q ss_pred CCCeeEEeeCCCeEEEEECCC----------C--------CEEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 018860 72 NALRAASASADFSAKVWDALT----------G--------DVLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132 (349)
Q Consensus 72 ~~~~l~s~s~D~~i~vWd~~~----------~--------~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~ 132 (349)
||++||+||.|+.|.||.-.. | ++...+ .|..-|..++|+|++.++++++.|.+|.+|+..
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence 999999999999999999762 0 022333 488899999999999999999999999999988
Q ss_pred CCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC-------CCCeeEEEEcCCCcEEEEe
Q 018860 133 RPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET-------KSPVTSAEVSQDGRYITTA 205 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~ 205 (349)
+. ...+.+.+|.+.|..+.|.|-+ ++|++=++|++|+||.+..-.+.+.+.. ..-...+.|+|||++|++.
T Consensus 160 tF-~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 160 TF-ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred cc-eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 76 5667788999999999998765 4566777889999999766445554432 2347788999999999774
Q ss_pred c-----CCeEEEEecCCceee-EEEcCCCceEEeeecCCC----CC------------EEEEecCCCeEEEEeCCCCcEE
Q 018860 206 D-----GSTVKFWDANHFGLV-KSYNMPCTIESASLEPKY----GN------------KFVAGGEDMWVRFFDFHTGNEI 263 (349)
Q Consensus 206 ~-----d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~----~~------------~~~~~~~d~~i~v~d~~~~~~~ 263 (349)
. ..++.|.+-.+++.- ....+...+..+.|+|.- .. .+|+|+.|++|.||.....+++
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred hhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 2 246888887777643 334555566677776521 11 4678999999999999877775
Q ss_pred EEe-cCCCcceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 264 ACN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 264 ~~~-~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
... .-...+|..++|+|||-.|..+|.||+|.+..+..
T Consensus 318 ~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 318 FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 443 23467899999999999999999999999998754
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.6e-27 Score=202.39 Aligned_cols=268 Identities=20% Similarity=0.311 Sum_probs=212.2
Q ss_pred EEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEE----EE---------------eccCCeEEEEEEcCCC
Q 018860 54 IGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVL----HS---------------FEHKHIVRACSFSEDT 114 (349)
Q Consensus 54 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~----~~---------------~~~~~~v~~~~~s~~~ 114 (349)
...+..|..+|.+|+++++..+.++++.|++|.-|++.+|+.. .. -.|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5667789999999999999999999999999999999888633 11 0245568899999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec-CCCCeeEE
Q 018860 115 HLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE-TKSPVTSA 193 (349)
Q Consensus 115 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~ 193 (349)
++|++|+.|..|.+|+..+.. ....+.+|.+.|.+++|-.....+++ ++.|++|++|++.....+.++. |+..|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-hv~~~~ghr~~V~~L~fr~gt~~lys-~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-HVKVFKGHRGAVSSLAFRKGTSELYS-ASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccc-hhhcccccccceeeeeeecCccceee-eecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 999999999999999987644 34567889999999998755555554 5556999999998877776665 45678888
Q ss_pred EEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEec-CC--
Q 018860 194 EVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNK-GH-- 269 (349)
Q Consensus 194 ~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~h-- 269 (349)
....-++.++++ .|+++++|++.....+........+.+++|.. ..+|++|++||.|.+|++...+++.+.+ +|
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred chhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 888788888776 69999999995544444444445677788764 6789999999999999999888776542 22
Q ss_pred ---------CcceeEEEEccCCCeEEEecCCCCEEEecCCCC--CCCcceeeeccCeeeeeEeChhh
Q 018860 270 ---------HGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV--TNDDTETLTANGTIGKVKVTADE 325 (349)
Q Consensus 270 ---------~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 325 (349)
..||++|+..|..+++||||.+|+||+|.+... ......++...|-++.+.+....
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSG 437 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCC
Confidence 249999999999999999999999999998765 22233556667777777765543
No 92
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=8.1e-27 Score=191.08 Aligned_cols=275 Identities=18% Similarity=0.299 Sum_probs=206.4
Q ss_pred ccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc
Q 018860 60 HKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR 139 (349)
Q Consensus 60 h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~ 139 (349)
..+.|..+.|++.+..|+.+++||+++++++...+....+.|..++.+++|.++ ..+++|+.|+.|+++|+++.. ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~--~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN--ED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc--ce
Confidence 456799999999999999999999999999999888888999999999999974 568999999999999998654 34
Q ss_pred eeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCce
Q 018860 140 EVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFG 219 (349)
Q Consensus 140 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~ 219 (349)
.+..|...++++.+.+..+.++ +|+.|++|++||.|.......+.....|.++.... .++++++.+..+.+||+++..
T Consensus 89 ~igth~~~i~ci~~~~~~~~vI-sgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g-~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVI-SGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG-NRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eeccCCCceEEEEeeccCCeEE-EcccCccEEEEeccccccccccccCceEEEEeccC-CEEEEeecCceEEEEEccccc
Confidence 5677889999999987666666 56677999999999866666676666777776663 356677889999999999865
Q ss_pred eeE---EEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCC----cEEEEecCCC---------cceeEEEEccCCC
Q 018860 220 LVK---SYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTG----NEIACNKGHH---------GPVHCVRFSPGGE 283 (349)
Q Consensus 220 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~h~---------~~i~~l~~sp~~~ 283 (349)
... .....-++.++++.| .+.-+++++-||.|.+=.+... +....++.|- .+|++++|+|-..
T Consensus 167 ~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred chhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 433 233344677888888 4677899999999877555544 3334556663 4899999999999
Q ss_pred eEEEecCCCCEEEecCCCCCCCcceeeeccCeeeeeEeChhhhhccccceeecccccchhhhh
Q 018860 284 SYASGSEDGTIRIWQTGPVTNDDTETLTANGTIGKVKVTADEVSRKIEGFHIADEGKMKEKEE 346 (349)
Q Consensus 284 ~l~sgs~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (349)
+||||+.||.|.+||..+-.... +-......+..+.+.. ..+-++|+.+++.++.+.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~-q~~~~~~SI~slsfs~-----dG~~LAia~sy~ye~~~~ 302 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLK-QLAKYETSISSLSFSM-----DGSLLAIASSYQYERADT 302 (323)
T ss_pred eEEecCCCceEEEccCcchhhhh-hccCCCCceEEEEecc-----CCCeEEEEechhhhcCCC
Confidence 99999999999999986532110 0011112233333322 223366777776666554
No 93
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=9e-29 Score=196.99 Aligned_cols=243 Identities=18% Similarity=0.263 Sum_probs=202.1
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEEC
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDA 90 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~ 90 (349)
+|.||++.|.....+ .+...-+|+++|-+.++||.-+|..+++|+ |+.-|.+|+|+.|..+|+||+.++.+||+|+
T Consensus 54 tfeghkgavw~~~l~---~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLN---KNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred eeeccCcceeeeecC---chhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 457999999988665 367788999999999999999999998886 8889999999999999999999999999998
Q ss_pred CCCCE--EEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 018860 91 LTGDV--LHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMG 168 (349)
Q Consensus 91 ~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 168 (349)
+..+. ...-.|+..|+.+.|....+.|+|++.|++||+||..+...... ...+.+++++..+++ +.++.++.. +
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s--L~~~s~VtSlEvs~d-G~ilTia~g-s 205 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS--LEFNSPVTSLEVSQD-GRILTIAYG-S 205 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE--EecCCCCcceeeccC-CCEEEEecC-c
Confidence 76542 23335899999999999888999999999999999987654222 223567888987754 455544433 7
Q ss_pred eEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEE--cCCCceEEeeecCCCCCEEEE
Q 018860 169 GVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSY--NMPCTIESASLEPKYGNKFVA 245 (349)
Q Consensus 169 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 245 (349)
.|++||..+-..++.++.+..|.+..++|+..++++ +.|..+.-||..++..+-.+ .+...+.++.|+|+ +..+++
T Consensus 206 sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd-GE~yAs 284 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD-GELYAS 284 (334)
T ss_pred eeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC-Cceeec
Confidence 999999999999999988888999999998776655 56899999999999888775 45567889999995 899999
Q ss_pred ecCCCeEEEEeCCCCcE
Q 018860 246 GGEDMWVRFFDFHTGNE 262 (349)
Q Consensus 246 ~~~d~~i~v~d~~~~~~ 262 (349)
|+.||+||+|.+..++.
T Consensus 285 GSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cCCCceEEEEEecCCCc
Confidence 99999999999876554
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.8e-27 Score=209.83 Aligned_cols=240 Identities=21% Similarity=0.319 Sum_probs=208.5
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeec-ccCCeEEEEECCCCCeeEEeeCCCeEEEEECCC
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDTNALRAASASADFSAKVWDALT 92 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~ 92 (349)
-+.+.|+++.|++ +|.+|+.|..+|.+.|||..+.+.++.+.+ |...|.+++|. ...+.+|+.|+.|..+|+..
T Consensus 215 ~~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 215 FGEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred cCCCceEEEEECC---CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence 3488999999997 999999999999999999999999999999 99999999998 55789999999999999988
Q ss_pred CCEEEE-ec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEe--eCCC
Q 018860 93 GDVLHS-FE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC--TDMG 168 (349)
Q Consensus 93 ~~~~~~-~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg 168 (349)
.+.... +. |...|..+.|++|++++|+|+.|..+.+||... ..+...+..|.+.|.+++|+|-...+||+| +.|+
T Consensus 290 ~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 290 SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 765444 43 888999999999999999999999999999843 345667788999999999999888888875 4679
Q ss_pred eEEEEECCCCceEEeecCCCCeeEEEEcCCCcEE-EEe--cCCeEEEEecCCceeeEEEc-CCCceEEeeecCCCCCEEE
Q 018860 169 GVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYI-TTA--DGSTVKFWDANHFGLVKSYN-MPCTIESASLEPKYGNKFV 244 (349)
Q Consensus 169 ~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~--~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 244 (349)
+|++||..+++.+..+...+.|+.+.|++..+-+ ++- .+..|.||+..+...+..+. +..++..++++|+ +..++
T Consensus 369 ~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd-g~~i~ 447 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD-GETIV 447 (484)
T ss_pred EEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC-CCEEE
Confidence 9999999999999999999999999999987544 442 26789999998877766654 4567888999985 89999
Q ss_pred EecCCCeEEEEeCCCC
Q 018860 245 AGGEDMWVRFFDFHTG 260 (349)
Q Consensus 245 ~~~~d~~i~v~d~~~~ 260 (349)
+|+.|.++++|++...
T Consensus 448 t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 448 TGAADETLRFWNLFDE 463 (484)
T ss_pred EecccCcEEeccccCC
Confidence 9999999999998764
No 95
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.5e-27 Score=187.69 Aligned_cols=237 Identities=24% Similarity=0.331 Sum_probs=190.2
Q ss_pred EEEEECC--CCC-eeEEe-----eCCCeEEEEECCCCCE---EEEeccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 018860 65 WSCCLDT--NAL-RAASA-----SADFSAKVWDALTGDV---LHSFEHKHIVRACSFSED-THLLLTGGMEKILRIFDLN 132 (349)
Q Consensus 65 ~~~~~~~--~~~-~l~s~-----s~D~~i~vWd~~~~~~---~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~ 132 (349)
.++.|+| .++ .+|++ ...|.+.|-++...+- ...+.-...+..++|++. .+.+++++.||++|+||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4567776 222 22332 3467788888864433 344556778999999985 5678899999999999998
Q ss_pred CCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCC--cEEEEecCCe
Q 018860 133 RPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDG--RYITTADGST 209 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~--~~l~~~~d~~ 209 (349)
.+..+...++.|+.+|.++.|.+.....+++++.|++|++||...+..++++..+ ..|....|+|.. .+.+++.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 8888888999999999999999988888888899999999999988888888765 467888999853 4456678999
Q ss_pred EEEEecCCceeeEEEcCC-CceEEeeecCCCCCEEEEecCCCeEEEEeCCCCc-EEEEecCCCcceeEEEEccCC-CeEE
Q 018860 210 VKFWDANHFGLVKSYNMP-CTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGN-EIACNKGHHGPVHCVRFSPGG-ESYA 286 (349)
Q Consensus 210 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~h~~~i~~l~~sp~~-~~l~ 286 (349)
+++||++.......+..+ ..+.++.|+.-+.+.+++|+.|+.||.||++..+ .+.++.+|.-.|..+.|||-. ..||
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 999999865433334443 4677888887777889999999999999998755 477889999999999999974 5789
Q ss_pred EecCCCCEEEecCCC
Q 018860 287 SGSEDGTIRIWQTGP 301 (349)
Q Consensus 287 sgs~Dg~v~vW~~~~ 301 (349)
|+|.|-+++|||...
T Consensus 252 SasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 252 SASYDMTVRIWDPER 266 (311)
T ss_pred hccccceEEeccccc
Confidence 999999999999753
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=4.7e-28 Score=199.66 Aligned_cols=243 Identities=21% Similarity=0.309 Sum_probs=202.4
Q ss_pred cccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec---------cCCeEEEEEEcCCCCEEEEEeCCCeEEEE
Q 018860 59 GHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE---------HKHIVRACSFSEDTHLLLTGGMEKILRIF 129 (349)
Q Consensus 59 ~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~s~~~d~~i~lw 129 (349)
|.+.-+.|..|+||+++|+|||.||-|.|||..+|+..+.++ +..+|.|+.|+.|..++++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 345557889999999999999999999999999987655442 56789999999999999999999999999
Q ss_pred ECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCCcEE-EEecC
Q 018860 130 DLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYI-TTADG 207 (349)
Q Consensus 130 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~d 207 (349)
.+.++....+.-..|...|+++.|+.++.++++ ++-|.++|+.-+++|++++.+.++ +-++.+.|.++|..+ +++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS-~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILS-ASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhc-ccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 998877655555688999999999987777775 555689999999999999999875 468999999999875 56779
Q ss_pred CeEEEEecCCceeeEEEcCC---CceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEec---CCCcceeEEEEccC
Q 018860 208 STVKFWDANHFGLVKSYNMP---CTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNK---GHHGPVHCVRFSPG 281 (349)
Q Consensus 208 ~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~---~h~~~i~~l~~sp~ 281 (349)
++|++|+..+..++.+|... ..+.++...|.+...++.|...+++++.++. |+.+..+. ...+..-+.+.||.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCC
Confidence 99999999998888777543 3467788888888999999999999999975 55555543 23455667789999
Q ss_pred CCeEEEecCCCCEEEecCCCCC
Q 018860 282 GESYASGSEDGTIRIWQTGPVT 303 (349)
Q Consensus 282 ~~~l~sgs~Dg~v~vW~~~~~~ 303 (349)
|.++++.++|+.++.+++..+.
T Consensus 449 GewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCc
Confidence 9999999999999999876543
No 97
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.7e-27 Score=199.14 Aligned_cols=271 Identities=20% Similarity=0.250 Sum_probs=206.6
Q ss_pred EEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCC---EEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEE
Q 018860 54 IGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGD---VLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIF 129 (349)
Q Consensus 54 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~---~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lw 129 (349)
.+.+..|++.||-+.|+++|++|||++.|.+.-+|.+.... ..+++ .|..+|..+.||||.+++++|+.|..+++|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 45678899999999999999999999999999999875433 24443 488999999999999999999999999999
Q ss_pred ECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC--CCCeeEEEEcCCCcEEEE-ec
Q 018860 130 DLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET--KSPVTSAEVSQDGRYITT-AD 206 (349)
Q Consensus 130 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~-~~ 206 (349)
|+.+++.......++...+.+++|.|++.. +++|+.|+++..||+... .....+. ...+.+++..+||+++.. ..
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 998876543333445678899999987665 556777799999998643 3333332 235889999999988755 56
Q ss_pred CCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcc--eeEEEEcc-CCC
Q 018860 207 GSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGP--VHCVRFSP-GGE 283 (349)
Q Consensus 207 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~--i~~l~~sp-~~~ 283 (349)
|..|++++..+...+........+.+..++. +++++++.=.+..+++||+.....+..+.||... |-.-+|-- +..
T Consensus 375 d~~i~l~~~e~~~dr~lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred ccceeeechhhhhhhccccccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 9999999988776666666667788888875 4788888889999999999988888888888643 22334543 447
Q ss_pred eEEEecCCCCEEEecCCCCCCCcceeeeccCeeeeeEeChhhhhc
Q 018860 284 SYASGSEDGTIRIWQTGPVTNDDTETLTANGTIGKVKVTADEVSR 328 (349)
Q Consensus 284 ~l~sgs~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (349)
+++|||+|++|+||+...+.... +--++.+..+++...|..-..
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~-~LsGHs~~vNcVswNP~~p~m 497 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLA-VLSGHSKTVNCVSWNPADPEM 497 (519)
T ss_pred eEEecCCCceEEEEEccCCceeE-eecCCcceeeEEecCCCCHHH
Confidence 89999999999999976554331 112234566666665554333
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.3e-26 Score=185.73 Aligned_cols=244 Identities=22% Similarity=0.288 Sum_probs=198.9
Q ss_pred EEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEe---ccCCeEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 018860 55 GTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSF---EHKHIVRACSFSE-DTHLLLTGGMEKILRIFD 130 (349)
Q Consensus 55 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~---~~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd 130 (349)
+.+++|.+.|.+++|..+|..|++|+.|+++++|++......... .|...|-.++|+| ...++++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 567899999999999999999999999999999999877544333 3777888889887 467899999999999999
Q ss_pred CCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEE-EEecCCe
Q 018860 131 LNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYI-TTADGST 209 (349)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~ 209 (349)
++..+...+.. ..+.-.-+.|+|+++++++ ++.|..|-+.|.|+.+.....+....++.+.|+-++.++ .+...|.
T Consensus 94 ~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~-~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKCTARIE--TKGENINITWSPDGEYIAV-GNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcEEEEee--ccCcceEEEEcCCCCEEEE-ecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 98765433222 2334445788988887765 455578999999999988888777778888888666554 4555699
Q ss_pred EEEEecCCceeeEEEcC-CCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEe
Q 018860 210 VKFWDANHFGLVKSYNM-PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASG 288 (349)
Q Consensus 210 i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sg 288 (349)
|.|......+++..++. +....++.|.|. +++|++|+.|..+.+||+...-++..+.-+.-+|..+.||.+|++||||
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~-GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPD-GRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCC-CceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 99998888888777654 445667888885 9999999999999999999888888888899999999999999999999
Q ss_pred cCCCCEEEecCCCC
Q 018860 289 SEDGTIRIWQTGPV 302 (349)
Q Consensus 289 s~Dg~v~vW~~~~~ 302 (349)
|+|..|-|=++..+
T Consensus 250 SEDh~IDIA~vetG 263 (313)
T KOG1407|consen 250 SEDHFIDIAEVETG 263 (313)
T ss_pred CccceEEeEecccC
Confidence 99999977666544
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.5e-26 Score=186.83 Aligned_cols=239 Identities=18% Similarity=0.280 Sum_probs=185.8
Q ss_pred cccCCeEEEEECCC-CCeeEEeeCCCeEEEEECCC-CCEEE--EeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 018860 59 GHKGAVWSCCLDTN-ALRAASASADFSAKVWDALT-GDVLH--SFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRP 134 (349)
Q Consensus 59 ~h~~~v~~~~~~~~-~~~l~s~s~D~~i~vWd~~~-~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~ 134 (349)
...+.|.+++|+|. ...++.+|+|++||+|+++. |...- ...|..+|.+++|+.||..+++|+.|+.+++||+.+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 35677999999994 44556899999999999876 34332 3358899999999999999999999999999999876
Q ss_pred CCCCceeccCCCCeEEEEEecCCC-eEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEE
Q 018860 135 DAPPREVDRSPGSVRTVAWLHSDQ-TILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFW 213 (349)
Q Consensus 135 ~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iw 213 (349)
+ ...+..|.+++.++.|.+... ..|+||+.|++||.||+|+..++.++.....+.++.+-.. ..+++..++.|.+|
T Consensus 105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~p-m~vVata~r~i~vy 181 (347)
T KOG0647|consen 105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYP-MAVVATAERHIAVY 181 (347)
T ss_pred C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCc-eeEEEecCCcEEEE
Confidence 3 456778999999999987544 4788999999999999999999999888877776655432 23445568899999
Q ss_pred ecCCcee-eEEE--cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCC--cEEEEecCCC---------cceeEEEEc
Q 018860 214 DANHFGL-VKSY--NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTG--NEIACNKGHH---------GPVHCVRFS 279 (349)
Q Consensus 214 d~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~--~~~~~~~~h~---------~~i~~l~~s 279 (349)
++++.-. .+.. ...-+..+++..++ ...++.|+-+|.+.+..+..+ +.-..++.|- .+|++++|+
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d-~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQD-KDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEec-CCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 9965422 1211 22334566666654 556799999999999988776 3334455553 368889999
Q ss_pred cCCCeEEEecCCCCEEEecCCC
Q 018860 280 PGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 280 p~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
|.-..|+|++.||+..+||-+.
T Consensus 261 P~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred cccceEEEecCCceEEEecchh
Confidence 9999999999999999999753
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=9e-27 Score=197.43 Aligned_cols=236 Identities=22% Similarity=0.313 Sum_probs=198.7
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEEC
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDA 90 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~ 90 (349)
+|.|--++|+.+.|.+ +++++++++.|+..++|+..+.....+|.||++.|+++.|......+++|+.|.+||+||+
T Consensus 214 tLaGs~g~it~~d~d~---~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 214 TLAGSLGNITSIDFDS---DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhccCCCcceeeecC---CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 4567778899999987 8999999999999999999999999999999999999999887777999999999999999
Q ss_pred CCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 018860 91 LTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGV 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v 170 (349)
....|.+++-....+..+..+ ...++||-.|++||.||....... .... ..+.|+++..++.+..++ +++.|.++
T Consensus 291 ~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~-~sv~-~gg~vtSl~ls~~g~~lL-sssRDdtl 365 (459)
T KOG0288|consen 291 QKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKT-RSVP-LGGRVTSLDLSMDGLELL-SSSRDDTL 365 (459)
T ss_pred hhhheeccccccccccceEec--ceeeeecccccceEEEeccCCcee-eEee-cCcceeeEeeccCCeEEe-eecCCCce
Confidence 999999988777777777766 456889999999999998765532 2232 345899999876655555 55888999
Q ss_pred EEEECCCCceEEeecC-----CCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCC---CceEEeeecCCCCC
Q 018860 171 RLWDVRSGEIVQTLET-----KSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMP---CTIESASLEPKYGN 241 (349)
Q Consensus 171 ~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 241 (349)
.+.|+++....+.+.. .+..+.+.|+|++.|++++ .||.|.||++.++++......+ ..+.++.|+|. +.
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s-G~ 444 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS-GS 444 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC-Cc
Confidence 9999999888777643 3468899999999998765 5999999999999988776553 24789999985 89
Q ss_pred EEEEecCCCeEEEE
Q 018860 242 KFVAGGEDMWVRFF 255 (349)
Q Consensus 242 ~~~~~~~d~~i~v~ 255 (349)
.+++++.++.+++|
T Consensus 445 ~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 445 GLLSADKQKAVTLW 458 (459)
T ss_pred hhhcccCCcceEec
Confidence 99999999999998
No 101
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=2e-26 Score=199.82 Aligned_cols=278 Identities=16% Similarity=0.182 Sum_probs=229.2
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC---CCeEEEeecc--cCCeEEEEECCCCCeeEEeeCCCeEEEE
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET---GDWIGTFEGH--KGAVWSCCLDTNALRAASASADFSAKVW 88 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~---~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~D~~i~vW 88 (349)
.|.+-|.++..|. ..+++.+|++ |.++|||+.. ...+..+..- ..-|++|.+.+|++.|++||.-.++-||
T Consensus 417 ~HGEvVcAvtIS~---~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISN---PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecC---CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 6888888887775 5679999987 8899999753 2456666653 4668999999999999999999999999
Q ss_pred ECCCCCEEEEec---cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEee
Q 018860 89 DALTGDVLHSFE---HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCT 165 (349)
Q Consensus 89 d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 165 (349)
|+..-...-..+ .....++++.+||.+..+++..||.|++||+.+ +...+.+++|+....++..++++ .-|-+|+
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dG-tklWTGG 570 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDG-TKLWTGG 570 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCC-ceeecCC
Confidence 987653322222 223578899999999999999999999999975 45578899999999999987655 4455777
Q ss_pred CCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEE
Q 018860 166 DMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFV 244 (349)
Q Consensus 166 ~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
-|++||-||+|+++.++.....+.|.++-++|++.+|+.+ .++.+.+-............+..-+.++.|.+ .++.|+
T Consensus 571 lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwfv 649 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWFV 649 (705)
T ss_pred CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCceee
Confidence 7899999999999988777777889999999999998776 57889888887766666666666778888887 599999
Q ss_pred EecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 245 AGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 245 ~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
+.+.|+-+-.|.+..|..+...+ ...+|.++.+|.|+++++|||-|+...||.+
T Consensus 650 StGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999999888887665 5678999999999999999999999888854
No 102
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-25 Score=185.15 Aligned_cols=279 Identities=16% Similarity=0.230 Sum_probs=209.5
Q ss_pred eeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEE
Q 018860 19 VVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHS 98 (349)
Q Consensus 19 v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~ 98 (349)
-.|+.||+ .|.+||+|..||.+.|||..+...-+.+.+|..+|.+++|+++|+.|+|+|.|..|++||+..|.+++.
T Consensus 26 a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 46899997 799999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred eccCCeEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCce--eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 018860 99 FEHKHIVRACSFSEDTH-LLLTGGMEKILRIFDLNRPDAPPRE--VDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDV 175 (349)
Q Consensus 99 ~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~lwd~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~ 175 (349)
+....+|..+.|+|-.. ..++.-.+..-.+-++..+...... -.+....+-+..++...+.++.+|...|.+.++|.
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 99999999999999543 3333334444445554432211000 00111111111233445566667888899999999
Q ss_pred CCCceEEeecCC--CCeeEEEEcCCCcEEEE-ecCCeEEEEecCCc-------ee--eEEEcC---CCceEEeeecCCCC
Q 018860 176 RSGEIVQTLETK--SPVTSAEVSQDGRYITT-ADGSTVKFWDANHF-------GL--VKSYNM---PCTIESASLEPKYG 240 (349)
Q Consensus 176 ~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~-------~~--~~~~~~---~~~~~~~~~~~~~~ 240 (349)
.+.++++.+... ..+..+.++..|+++.. +.|+.||.|+++.- .+ .+.++- ..+...++|+. ++
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dg 261 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DG 261 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-Cc
Confidence 999999887653 47888999999988766 56999999997621 11 111110 11234567776 57
Q ss_pred CEEEEec-CCCeEEEEeCCCCcEEEEecCCC-cceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 241 NKFVAGG-EDMWVRFFDFHTGNEIACNKGHH-GPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 241 ~~~~~~~-~d~~i~v~d~~~~~~~~~~~~h~-~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
.++++++ .-..+++|....|..++.+.|-. .....+.|+|-...++|- ..|++++|....+
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 7777665 46789999999999999998876 567789999999999888 7899999986543
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.3e-26 Score=181.14 Aligned_cols=247 Identities=17% Similarity=0.224 Sum_probs=185.0
Q ss_pred ccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC---CeEEEeecccCCeEEEEECC--CCCeeEEeeCCCeEEE
Q 018860 13 HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDT--NALRAASASADFSAKV 87 (349)
Q Consensus 13 ~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~v 87 (349)
.+|.+.|.++... --|+.|+++|+|++|+|+...+. .++.+|+||+++|+.++|.. -|.+||||+.||.|-|
T Consensus 8 t~H~D~IHda~lD---yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLD---YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhh---hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 5788888766422 13889999999999999986543 57899999999999999965 7889999999999999
Q ss_pred EECCCCCEEEEe---ccCCeEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC--CCCceeccCCCCeEEEEEecCCC--
Q 018860 88 WDALTGDVLHSF---EHKHIVRACSFSED--THLLLTGGMEKILRIFDLNRPD--APPREVDRSPGSVRTVAWLHSDQ-- 158 (349)
Q Consensus 88 Wd~~~~~~~~~~---~~~~~v~~~~~s~~--~~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~-- 158 (349)
|.-.+|+-.+.. .|...|++++|.|. |-.|++++.||.|.+.+.+... ...++...|.-.++++.|.|...
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 998887433322 37789999999884 6789999999999999987652 23455677888999999987521
Q ss_pred -----------eEEEEeeCCCeEEEEECCCCceE--EeecC-CCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEE
Q 018860 159 -----------TILSTCTDMGGVRLWDVRSGEIV--QTLET-KSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSY 224 (349)
Q Consensus 159 -----------~~l~~~~~dg~v~vwd~~~~~~~--~~~~~-~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~ 224 (349)
+-|++++.|+.|+||+..+++.. +++.. ..-|+.+++.|.-.+
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl----------------------- 221 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL----------------------- 221 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC-----------------------
Confidence 33666777788888887766432 22333 334666666664210
Q ss_pred cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCC-c--EEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 225 NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTG-N--EIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-~--~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
...++++++.||++.+|..... + ....++.....++.+.||+.|+.|+.++.|+++.+|..
T Consensus 222 --------------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 222 --------------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred --------------CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 1346788888888888876521 1 12234446678999999999999999999999999964
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.8e-25 Score=200.58 Aligned_cols=232 Identities=25% Similarity=0.414 Sum_probs=187.3
Q ss_pred eccCCCceee-EEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEEC
Q 018860 12 CHGHSRPVVD-LFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDA 90 (349)
Q Consensus 12 ~~gh~~~v~~-~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~ 90 (349)
+-+|.+-|.. ++|.+ .++-.|++|+.|.+|.+|...+.+++.+++||+..|.|++...++. ++|||+|.++|+|..
T Consensus 53 ~~~~~g~i~~~i~y~e--~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAE--SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred cccCcceeeccceecc--ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence 4578888877 88876 3455688999999999999999999999999999999999888887 999999999999986
Q ss_pred CCCCEEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 018860 91 LTGDVLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG 169 (349)
Q Consensus 91 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 169 (349)
+++...+ .|+..|.+++.-|++ .++||+.|++||+|.- +...+.+.+|...|+.+++.+... |++|+.||.
T Consensus 130 --~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~ 201 (745)
T KOG0301|consen 130 --GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGS 201 (745)
T ss_pred --hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCC--eEeecCCce
Confidence 4455554 499999999999987 7899999999999974 445678889999999999986533 557888899
Q ss_pred EEEEECCCCceEEeecC-CCCeeEEE-EcCCCcEEEEecCCeEEEEecCCceeeEEEcCCC-ceEEeeecCCCCCEEEEe
Q 018860 170 VRLWDVRSGEIVQTLET-KSPVTSAE-VSQDGRYITTADGSTVKFWDANHFGLVKSYNMPC-TIESASLEPKYGNKFVAG 246 (349)
Q Consensus 170 v~vwd~~~~~~~~~~~~-~~~v~~~~-~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 246 (349)
|+.|++ +|.++..+.+ .+-+.++. ..+++..++|+.|++++||+.. .+.+.+.+|. .+-++.+-+ +.-+++|
T Consensus 202 Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~--NgDIvvg 276 (745)
T KOG0301|consen 202 IRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL--NGDIVVG 276 (745)
T ss_pred EEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee--CCCEEEe
Confidence 999999 6666666554 45677787 4455666788899999999987 6777777775 344444443 3458999
Q ss_pred cCCCeEEEEeCCC
Q 018860 247 GEDMWVRFFDFHT 259 (349)
Q Consensus 247 ~~d~~i~v~d~~~ 259 (349)
++||.||+|....
T Consensus 277 ~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 277 GSDGRVRVFTVDK 289 (745)
T ss_pred ccCceEEEEEecc
Confidence 9999999998763
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=6.7e-25 Score=206.17 Aligned_cols=275 Identities=20% Similarity=0.339 Sum_probs=215.2
Q ss_pred ccCCeEEEEECCCCCeeEEee--CCCeEEEEECCCCC------------EEEE-eccCCeEEEEEEcCCCCEEEEEeCCC
Q 018860 60 HKGAVWSCCLDTNALRAASAS--ADFSAKVWDALTGD------------VLHS-FEHKHIVRACSFSEDTHLLLTGGMEK 124 (349)
Q Consensus 60 h~~~v~~~~~~~~~~~l~s~s--~D~~i~vWd~~~~~------------~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~ 124 (349)
+...|.++.++|++..++||| .|+.++||+...-. .+.+ ..|...|.|+.|+|||.+||+||.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 346689999999999999999 99999999864311 1122 23888999999999999999999999
Q ss_pred eEEEEECCC----CCC-------------CCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC-
Q 018860 125 ILRIFDLNR----PDA-------------PPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET- 186 (349)
Q Consensus 125 ~i~lwd~~~----~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~- 186 (349)
.|.+|.... ... ....+.+|...|..+.|+| ++.++++++-|++|.+|+.++.+.+..+..
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecc
Confidence 999999762 000 1124678999999999998 667788888899999999999988888875
Q ss_pred CCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEEcCCC-------ceEEeeecCCCCCEEEEec----CCCeEEE
Q 018860 187 KSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSYNMPC-------TIESASLEPKYGNKFVAGG----EDMWVRF 254 (349)
Q Consensus 187 ~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----~d~~i~v 254 (349)
.+.|..+.|.|-|+++++ ++|++|++|++..+...+....+. .+..+.|+|+ +++|++.. .-.++.+
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD-G~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD-GHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC-cCeecchhhccCCcceeEE
Confidence 467999999999999987 578999999998887777665432 3567889984 88888753 2347888
Q ss_pred EeCCCCcEEEEecCCCcceeEEEEccC-----CC------------eEEEecCCCCEEEecCCCCCCC---------c--
Q 018860 255 FDFHTGNEIACNKGHHGPVHCVRFSPG-----GE------------SYASGSEDGTIRIWQTGPVTND---------D-- 306 (349)
Q Consensus 255 ~d~~~~~~~~~~~~h~~~i~~l~~sp~-----~~------------~l~sgs~Dg~v~vW~~~~~~~~---------~-- 306 (349)
.+-.+-+.-..+-||.+++.+++|+|. .+ .+|+||.|++|-||.+....+. .
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~ 329 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIV 329 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCcee
Confidence 887777766778899999999999982 11 5789999999999998543211 0
Q ss_pred --ce-----e---eeccCeeeeeEeChhhhhccccceeec
Q 018860 307 --TE-----T---LTANGTIGKVKVTADEVSRKIEGFHIA 336 (349)
Q Consensus 307 --~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (349)
.+ . ...+|++..++|+..|+.+.+....+.
T Consensus 330 DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls~ee~~ 369 (942)
T KOG0973|consen 330 DMSWSPDGFSLFACSLDGTVALIHFEEKELGVALSEEEIS 369 (942)
T ss_pred eeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccChhhhc
Confidence 01 1 113688889999999999998665544
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.7e-26 Score=201.28 Aligned_cols=230 Identities=16% Similarity=0.290 Sum_probs=188.6
Q ss_pred CCCCeeEEeeCCCeEEEEECCCCC------EEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-CCCceec
Q 018860 71 TNALRAASASADFSAKVWDALTGD------VLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPD-APPREVD 142 (349)
Q Consensus 71 ~~~~~l~s~s~D~~i~vWd~~~~~------~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~-~~~~~~~ 142 (349)
+.+++|+|||.||.|++|++.... ....++ |...|+.+++..+++.|+|+|.|-+|++|+..... .....+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 456689999999999999975432 233444 77889999999999999999999999999987553 4456678
Q ss_pred cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC--ceEEeec----------CCCCeeEEEEcCCCcEEEEe-cCCe
Q 018860 143 RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSG--EIVQTLE----------TKSPVTSAEVSQDGRYITTA-DGST 209 (349)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~~~~~~~----------~~~~v~~~~~~~~~~~l~~~-~d~~ 209 (349)
.|...|.++++..++..++++|+-|+.|.+||+.++ +.++.+. ...++.+++-++.+..++++ ..+-
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 899999999987788889999999999999999987 3333321 13457788888888666654 4789
Q ss_pred EEEEecCCceeeEEE-cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEe
Q 018860 210 VKFWDANHFGLVKSY-NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASG 288 (349)
Q Consensus 210 i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sg 288 (349)
+++||.++.+.+..+ .+...+..+.... ++..+++++.|++|++||+...+++.++..|+..||++..+|+-..+++|
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSG 273 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEec
Confidence 999999988765544 3445566666664 69999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEecCCC
Q 018860 289 SEDGTIRIWQTGP 301 (349)
Q Consensus 289 s~Dg~v~vW~~~~ 301 (349)
+.||.|..=|+..
T Consensus 274 ~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 274 GRDGNIYRTDLRN 286 (735)
T ss_pred CCCCcEEecccCC
Confidence 9999999887765
No 107
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.3e-25 Score=199.50 Aligned_cols=266 Identities=18% Similarity=0.262 Sum_probs=212.4
Q ss_pred EEEEEecCCCeEEEeCCCCC---e----------E------------------------EEeecccCCeEEEEECCCCCe
Q 018860 33 FLISASKDSSPMLRNGETGD---W----------I------------------------GTFEGHKGAVWSCCLDTNALR 75 (349)
Q Consensus 33 ~l~s~s~d~~i~iw~~~~~~---~----------~------------------------~~~~~h~~~v~~~~~~~~~~~ 75 (349)
.++++|.|++||+|+.+.+. . + .+..+.+..+++++++|+++.
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 47899999999999865411 0 0 011134456899999999999
Q ss_pred eEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEE
Q 018860 76 AASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSE---DTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTV 151 (349)
Q Consensus 76 l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~---~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~ 151 (349)
||+|..-|++||+++.+.+...+++ |...|.++.|+. ..++|++++.|+-|.+||+...-.....+.+|...|+++
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 9999999999999998877766665 889999999985 357899999999999999976666667788999999999
Q ss_pred EEecCCC-eEEEEeeCCCeEEEEECCC----CceEEe---ecCCCCeeEEEEcCCCcEE-EEecCCeEEEEecCCceeeE
Q 018860 152 AWLHSDQ-TILSTCTDMGGVRLWDVRS----GEIVQT---LETKSPVTSAEVSQDGRYI-TTADGSTVKFWDANHFGLVK 222 (349)
Q Consensus 152 ~~~~~~~-~~l~~~~~dg~v~vwd~~~----~~~~~~---~~~~~~v~~~~~~~~~~~l-~~~~d~~i~iwd~~~~~~~~ 222 (349)
.|...+. .-+.+|+.|+.| +|+... |..... ...+..+..+.+.|..+++ +++.|+.|+|||+..++..+
T Consensus 554 KFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred EEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 9987663 335566666655 444432 222111 1123457788899988776 45779999999999999998
Q ss_pred EEcCC----CceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 223 SYNMP----CTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 223 ~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
.|... ..+..+.+.|. +.|+++...|.++.+||..+++++....||...|+.+.|.+|-+.|+|.+.||+|.||.
T Consensus 633 ~FKgs~~~eG~lIKv~lDPS-giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPS-GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eecccccCCCceEEEEECCC-ccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 88653 34667788885 89999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 018860 299 TG 300 (349)
Q Consensus 299 ~~ 300 (349)
+.
T Consensus 712 lp 713 (1080)
T KOG1408|consen 712 LP 713 (1080)
T ss_pred Cc
Confidence 74
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.2e-25 Score=182.51 Aligned_cols=247 Identities=24% Similarity=0.420 Sum_probs=198.6
Q ss_pred CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 018860 52 DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFD 130 (349)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd 130 (349)
.+++.|.||++.||.++.......+.|+|.|.+.+||.+++|.|+..+. |.+.|+++.|++.+.++++++.|++..+|.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 4677889999999999999888899999999999999999999999885 899999999999999999999999999997
Q ss_pred C------CCCCC---------------------------------CCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 018860 131 L------NRPDA---------------------------------PPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVR 171 (349)
Q Consensus 131 ~------~~~~~---------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~ 171 (349)
. ..+.. +...+.+|.+.+.++.|...++++ ++++.|.+..
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~-vTaSWDRTAn 297 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM-VTASWDRTAN 297 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee-eeeeccccce
Confidence 2 21100 001244677778888898765554 5788889999
Q ss_pred EEECCCCceEEeecCC-CCeeEEEEcCCCcEEEE-ecCCeEEEEecCCce-eeEEEcC-CCceEEeeecCCCCCEEEEec
Q 018860 172 LWDVRSGEIVQTLETK-SPVTSAEVSQDGRYITT-ADGSTVKFWDANHFG-LVKSYNM-PCTIESASLEPKYGNKFVAGG 247 (349)
Q Consensus 172 vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 247 (349)
+||.++|++++.+.++ ...+.++.+|..+++++ +.|.+.++||.+..- .+..|+. ...+.+..|.. +..+++|+
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~--dd~vVSgS 375 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT--DDRVVSGS 375 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec--CCceeecC
Confidence 9999999999998764 56788888999888765 459999999998432 2333433 34566777764 56799999
Q ss_pred CCCeEEEEeCCCCcE-EEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 248 EDMWVRFFDFHTGNE-IACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 248 ~d~~i~v~d~~~~~~-~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
+|.+|++||+++... +.+++ -..+++.++.+..++.+|.--....|++||+...
T Consensus 376 DDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred CCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 999999999987654 45554 4578999999988888888888889999998654
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=4.9e-24 Score=195.00 Aligned_cols=290 Identities=19% Similarity=0.248 Sum_probs=220.7
Q ss_pred ceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeE-EeeCCCeEEE
Q 018860 9 PLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAA-SASADFSAKV 87 (349)
Q Consensus 9 ~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~D~~i~v 87 (349)
-++|.++...|+++.-+| --..++.|..+|+|.+.+...++-+.+|+...++|+.++|..||..++ +|+.-|.+-+
T Consensus 195 v~~f~~~~s~IT~ieqsP---aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 195 VYTFQEFFSRITAIEQSP---ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred EEEecccccceeEeccCC---cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence 456789999999998877 455899999999999999999999999996679999999999988654 5566699999
Q ss_pred EECCCCCEEEEec--cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC---------------------------
Q 018860 88 WDALTGDVLHSFE--HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPP--------------------------- 138 (349)
Q Consensus 88 Wd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~--------------------------- 138 (349)
||++..+...... |.+.|....|-|....+++++.|...++|-.++++...
T Consensus 272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence 9998876655443 44555555555555555555555555554332111000
Q ss_pred -----------------------c------------------------e--------------eccC-------------
Q 018860 139 -----------------------R------------------------E--------------VDRS------------- 144 (349)
Q Consensus 139 -----------------------~------------------------~--------------~~~~------------- 144 (349)
. . ...|
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 0 0 0000
Q ss_pred ----------------CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEee----cCCCCeeEEEEcCCCcEE-E
Q 018860 145 ----------------PGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTL----ETKSPVTSAEVSQDGRYI-T 203 (349)
Q Consensus 145 ----------------~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l-~ 203 (349)
...+++++.+ ..+++...|...|+|-+|++.+|.....+ .+..+|+.++...-++.+ +
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vs 510 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVS 510 (910)
T ss_pred cccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEE
Confidence 0123444443 34556666777799999999999888877 456789999988777665 5
Q ss_pred EecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCC
Q 018860 204 TADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGE 283 (349)
Q Consensus 204 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~ 283 (349)
++.+|.+++||.++..++..+...+.+..+..+. ....++.+.+|-.|+++|+.+.+.+..+.||++.|++++|||+|+
T Consensus 511 a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 511 AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR 589 (910)
T ss_pred ccCcceEEEEecCCcceeeeeccCCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence 5679999999999998888888777766666554 356788899999999999999999999999999999999999999
Q ss_pred eEEEecCCCCEEEecCCCCC
Q 018860 284 SYASGSEDGTIRIWQTGPVT 303 (349)
Q Consensus 284 ~l~sgs~Dg~v~vW~~~~~~ 303 (349)
+|++++.|++|++||+....
T Consensus 590 WlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred EEEEeecCCcEEEEeccCcc
Confidence 99999999999999986543
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=186.99 Aligned_cols=265 Identities=20% Similarity=0.268 Sum_probs=205.1
Q ss_pred EEEEEecCCC-eEEEeCCCCCeEEEeeccc-CCeEEEEECCCCCeeEEee-CCCeEEEEECCCCCEEE-EeccCCeEEEE
Q 018860 33 FLISASKDSS-PMLRNGETGDWIGTFEGHK-GAVWSCCLDTNALRAASAS-ADFSAKVWDALTGDVLH-SFEHKHIVRAC 108 (349)
Q Consensus 33 ~l~s~s~d~~-i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~~~~~-~~~~~~~v~~~ 108 (349)
.+.++|.|-. +.+||..+|....++++-. ..-.++.. -...+++++. ....+.+|.+...+... .+--+++|.++
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al 87 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL 87 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence 3445555654 8999999999888888752 22111211 1234666655 45579999987655444 34467889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC---------Cc
Q 018860 109 SFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS---------GE 179 (349)
Q Consensus 109 ~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~---------~~ 179 (349)
+-+|.|.+++.|+..+.|.+|.+.++... ..+.+|-..|+++.|+. ++.+|.+++.||.|++|++.. -+
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL-~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILL-NVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHH-HHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 99999999999989999999999876543 34477888999999985 455666888889999998642 23
Q ss_pred eEEeecCC-CCeeEEEEcCC---CcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEE
Q 018860 180 IVQTLETK-SPVTSAEVSQD---GRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFF 255 (349)
Q Consensus 180 ~~~~~~~~-~~v~~~~~~~~---~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~ 255 (349)
+.+.+..+ -+|+++.+.+. .++++++.|+++++||+..+.++..+..|..+.+++++|. .+.+++|+.+|.|.+.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpa-e~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPA-ERVVYIGTEEGKIFQN 244 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEccc-ccEEEecCCcceEEee
Confidence 45555543 47888877654 4677888999999999999999999999999999999996 7889999999999998
Q ss_pred eCCCC----------------cEEEEecCCCc--ceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 256 DFHTG----------------NEIACNKGHHG--PVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 256 d~~~~----------------~~~~~~~~h~~--~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
++... ..+..+.||.+ +|+|++++-||..|+||+.||+|+|||+..
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 87532 23455678988 999999999999999999999999999853
No 111
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=9.5e-25 Score=187.46 Aligned_cols=287 Identities=20% Similarity=0.227 Sum_probs=223.2
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC----CeEEEeecccCCeEEEEECCC-CCeeEEeeCCCeE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDTN-ALRAASASADFSA 85 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i 85 (349)
+.+-|.++|.+++|.|.. +-+.+|+|..-|.|-+|+..+. .-+.-+..|+++|.++.|+|. -..+.+.|.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~-~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTE-NRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccC-cceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 345688999999999953 3468999999999999998532 235667789999999999884 4478999999999
Q ss_pred EEEECCCCCE--EEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEE
Q 018860 86 KVWDALTGDV--LHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILS 162 (349)
Q Consensus 86 ~vWd~~~~~~--~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 162 (349)
|+=|++++.. +.... ....+..+.|+.+...++.+..=|...+||++.++.....+.-|...|.++++.|-...+++
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 9999987643 22222 22356778888887777777776789999999888766667778889999999999999999
Q ss_pred EeeCCCeEEEEECCCC--c---eEEeecCCCCeeEEEEcCCC-cEEEEecCCeEEEEec----CCceeeEEEcCCCc---
Q 018860 163 TCTDMGGVRLWDVRSG--E---IVQTLETKSPVTSAEVSQDG-RYITTADGSTVKFWDA----NHFGLVKSYNMPCT--- 229 (349)
Q Consensus 163 ~~~~dg~v~vwd~~~~--~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~d~~i~iwd~----~~~~~~~~~~~~~~--- 229 (349)
+|+-|++++|||+|.- + .+.++.+...|.++.|+|++ .+++++.|..|++||. ....+...+.+++.
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R 419 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR 419 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccc
Confidence 9999999999999863 2 36677888899999999975 6667788999999998 44455555555543
Q ss_pred ---eEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCC-CcceeEE-EEccCCCeEEE-ecCCCCEEEecC
Q 018860 230 ---IESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGH-HGPVHCV-RFSPGGESYAS-GSEDGTIRIWQT 299 (349)
Q Consensus 230 ---~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h-~~~i~~l-~~sp~~~~l~s-gs~Dg~v~vW~~ 299 (349)
...+.|.| +..++++|..-..|-+||-..++.+..+..- ...|.++ .|+|-+..+++ |+..|.|+||-.
T Consensus 420 wlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 420 WLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 34667888 4688899998889999999888877665333 2356554 79999885554 557889999954
No 112
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.6e-24 Score=195.08 Aligned_cols=283 Identities=18% Similarity=0.285 Sum_probs=196.2
Q ss_pred cCCCceeeEEEeecCCCccEEEEEe--cCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeC--CCeEEEEE
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISAS--KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASA--DFSAKVWD 89 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s--~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--D~~i~vWd 89 (349)
-|.++++|++||+ +|+|+++|= ..-.+++|+.+....+..|..|+-.|+|++|+|.++|+++.|. |-.|.+||
T Consensus 76 ssRk~~t~vAfS~---~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~d 152 (1080)
T KOG1408|consen 76 SSRKPLTCVAFSQ---NGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVND 152 (1080)
T ss_pred ccCcceeEEEEcC---CCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhh
Confidence 4778999999997 999999985 4456899999988899999999999999999999999998775 66788886
Q ss_pred CCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC-------------------------------
Q 018860 90 ALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPP------------------------------- 138 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~------------------------------- 138 (349)
-+.......-+-...|.+++|+.+|.++++++. ..|++|-+....+..
T Consensus 153 Wr~N~~~asnkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicA 231 (1080)
T KOG1408|consen 153 WRVNSSGASNKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICA 231 (1080)
T ss_pred hhhcccccccccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccc
Confidence 433222111122345666666666666666553 345666554222000
Q ss_pred --------------------------------------------------------------------------------
Q 018860 139 -------------------------------------------------------------------------------- 138 (349)
Q Consensus 139 -------------------------------------------------------------------------------- 138 (349)
T Consensus 232 estfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q 311 (1080)
T KOG1408|consen 232 ESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQ 311 (1080)
T ss_pred cceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhccc
Confidence
Q ss_pred --ceeccC-C---CCeEEEEEecCCCeEEEEeeCCCeEEEEECCC----CceEEeecCCCCeeEEE------------Ec
Q 018860 139 --REVDRS-P---GSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS----GEIVQTLETKSPVTSAE------------VS 196 (349)
Q Consensus 139 --~~~~~~-~---~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~----~~~~~~~~~~~~v~~~~------------~~ 196 (349)
+..... + ....++.|.+..+. ++....|..++|||++. |++-..+.|...+..+. ..
T Consensus 312 ~~~~~s~~~~a~fPD~IA~~Fdet~~k-lscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~acl 390 (1080)
T KOG1408|consen 312 PEPKNSESSPAIFPDAIACQFDETTDK-LSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACL 390 (1080)
T ss_pred ccccccccCcccCCceeEEEecCCCce-EEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccC
Confidence 000000 0 01234455544443 44555678999999986 34444444444444332 34
Q ss_pred CCCcEEEEecCCeEEEEecCCce---e-eE-EE---------------------------------cCCCceEEeeecCC
Q 018860 197 QDGRYITTADGSTVKFWDANHFG---L-VK-SY---------------------------------NMPCTIESASLEPK 238 (349)
Q Consensus 197 ~~~~~l~~~~d~~i~iwd~~~~~---~-~~-~~---------------------------------~~~~~~~~~~~~~~ 238 (349)
|.+.+++|+.|++|++||+.... . .+ .+ .-...+.+++++|.
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 56778999999999999986411 0 00 00 01124678888884
Q ss_pred CCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccC---CCeEEEecCCCCEEEecCCCC
Q 018860 239 YGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPG---GESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 239 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~---~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
+++|++|..-|.+|+|++...+....+.+|...|.|+.||.- .++|||+|.|.-|+|+|+...
T Consensus 471 -gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 471 -GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred -cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 899999999999999999988888888999999999999842 468999999999999998653
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.5e-23 Score=165.18 Aligned_cols=247 Identities=20% Similarity=0.312 Sum_probs=190.7
Q ss_pred eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCC------C----------CEEEEeccCCeEEEEEEcCCCCE
Q 018860 53 WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALT------G----------DVLHSFEHKHIVRACSFSEDTHL 116 (349)
Q Consensus 53 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~------~----------~~~~~~~~~~~v~~~~~s~~~~~ 116 (349)
.+..++ .+..|.+++|+|.|...+.|+..++.||--... + .+.+...|.+.|++++|+|+|++
T Consensus 25 ~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel 103 (350)
T KOG0641|consen 25 AINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL 103 (350)
T ss_pred EEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence 445554 456799999999999999999999999985321 1 01222347889999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCC----CCceeccCCCCeEEEEEec---CCCeEEEEee-CCCeEEEEECCCCceEEeecCCC
Q 018860 117 LLTGGMEKILRIFDLNRPDA----PPREVDRSPGSVRTVAWLH---SDQTILSTCT-DMGGVRLWDVRSGEIVQTLETKS 188 (349)
Q Consensus 117 l~s~~~d~~i~lwd~~~~~~----~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~~~ 188 (349)
|++|+.|++|++..++.... ...++.-|.+.|..++|.. .++.++++++ .|-.|.+=|-..|+..+.+..+.
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT 183 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence 99999999999987754322 2235677889999999974 3445665544 34566666777888888887654
Q ss_pred -CeeEEEEcCCC-cEEEEecCCeEEEEecCCceeeEEEcCC--------CceEEeeecCCCCCEEEEecCCCeEEEEeCC
Q 018860 189 -PVTSAEVSQDG-RYITTADGSTVKFWDANHFGLVKSYNMP--------CTIESASLEPKYGNKFVAGGEDMWVRFFDFH 258 (349)
Q Consensus 189 -~v~~~~~~~~~-~~l~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 258 (349)
-+.++ ++=++ .+++++.|.+|++||++-..+++.+... .-+.+++..|. ++.+++|-.|....+||++
T Consensus 184 ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps-grll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 184 GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS-GRLLASGHADSSCMLYDIR 261 (350)
T ss_pred ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC-cceeeeccCCCceEEEEee
Confidence 34433 22234 3444566999999999988888776431 23667888886 8999999999999999999
Q ss_pred CCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 259 TGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 259 ~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
.+..++.+..|+..|.|+.|||...||+++|.|.+|++=|++.-
T Consensus 262 g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 262 GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 99999999999999999999999999999999999999998653
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-24 Score=177.88 Aligned_cols=248 Identities=20% Similarity=0.262 Sum_probs=169.8
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC------------------------------------CeE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG------------------------------------DWI 54 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~------------------------------------~~~ 54 (349)
+|.||++.|++++||+ ||++|++++.|++|++|+.... ..+
T Consensus 81 ~LKgH~~~vt~~~FsS---dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSS---DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhccCCceeeeEEcC---CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 4689999999999997 9999999999999999985421 111
Q ss_pred EEe-----------------------ecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccC-CeEEEEEE
Q 018860 55 GTF-----------------------EGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHK-HIVRACSF 110 (349)
Q Consensus 55 ~~~-----------------------~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~v~~~~~ 110 (349)
..+ +-|+..|..+.+...+++|+|++.|..|.+|+++ |+.+..+..+ ..-+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 111 1244455556666778899999999999999998 8888777643 34567889
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCC-------CCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceE--
Q 018860 111 SEDTHLLLTGGMEKILRIFDLNRPDA-------PPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIV-- 181 (349)
Q Consensus 111 s~~~~~l~s~~~d~~i~lwd~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-- 181 (349)
||+|+++++++.-..+++|.+--.+. ....+.+|...|.+.+|+++..+ +++.+.||++|+||+.-....
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEecCCcEEEeeccceEecCC
Confidence 99999999999999999999632211 12357899999999999876655 557888899999997522110
Q ss_pred --EeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCC
Q 018860 182 --QTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHT 259 (349)
Q Consensus 182 --~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 259 (349)
..+... | ..+-++. .....+.++|. ++.|+ .+....+++|..++
T Consensus 316 Dpk~Lk~g---------~--~pl~aag---------------------~~p~RL~lsP~-g~~lA-~s~gs~l~~~~se~ 361 (420)
T KOG2096|consen 316 DPKILKEG---------S--APLHAAG---------------------SEPVRLELSPS-GDSLA-VSFGSDLKVFASED 361 (420)
T ss_pred CchHhhcC---------C--cchhhcC---------------------CCceEEEeCCC-CcEEE-eecCCceEEEEccc
Confidence 001000 0 0000000 01112334442 33222 22333566666666
Q ss_pred CcEEEEe-cCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 260 GNEIACN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 260 ~~~~~~~-~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
++...++ +.|...|.+++|+|+|++++|++ |..+++..
T Consensus 362 g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 362 GKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 6665544 46899999999999999999888 66677764
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=2.9e-23 Score=182.51 Aligned_cols=260 Identities=16% Similarity=0.135 Sum_probs=194.6
Q ss_pred eccCCCceeeEEEeecCCCccEE-EEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEE-eeCCCeEEEEE
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFL-ISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAAS-ASADFSAKVWD 89 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l-~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~D~~i~vWd 89 (349)
+.+|.. +..+.|+| +|+++ ++++.++.+++|+..+++.+..+..|.. +..++|+++++.++. ++.|+.|++||
T Consensus 27 ~~~~~~-~~~l~~~~---dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 27 FPVGQR-PRGITLSK---DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVID 101 (300)
T ss_pred EECCCC-CCceEECC---CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence 344544 56788986 77776 5677889999999999888887776554 467899999987754 56789999999
Q ss_pred CCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 018860 90 ALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEK-ILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMG 168 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 168 (349)
+.+++.+..+.+...+..++|+|++.++++++.++ .+..||..+.... ... .....+..+.|++++..+++++..++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~-~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~ 179 (300)
T TIGR03866 102 IETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV-DNV-LVDQRPRFAEFTADGKELWVSSEIGG 179 (300)
T ss_pred CCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE-EEE-EcCCCccEEEECCCCCEEEEEcCCCC
Confidence 99888888777656678899999999999888765 4667887643221 111 12234567888888777777776679
Q ss_pred eEEEEECCCCceEEeecCC--------CCeeEEEEcCCCcEEE--EecCCeEEEEecCCceeeEEEcCCCceEEeeecCC
Q 018860 169 GVRLWDVRSGEIVQTLETK--------SPVTSAEVSQDGRYIT--TADGSTVKFWDANHFGLVKSYNMPCTIESASLEPK 238 (349)
Q Consensus 169 ~v~vwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
.|++||+++++.+..+... .....+.++|+++++. .+.++.+.+||+++++.+........+..++|+|.
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 259 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPD 259 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCC
Confidence 9999999998877655421 1124578899998743 34567899999998887766555556778889885
Q ss_pred CCCEEEEe-cCCCeEEEEeCCCCcEEEEecCCCcceeEEEEcc
Q 018860 239 YGNKFVAG-GEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSP 280 (349)
Q Consensus 239 ~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp 280 (349)
+++++++ +.++.|++||+.+++.+..++.. ...+.++|+|
T Consensus 260 -g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 260 -EKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred -CCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 6677665 57999999999999998888754 5558998876
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.9e-26 Score=204.81 Aligned_cols=236 Identities=16% Similarity=0.244 Sum_probs=192.2
Q ss_pred eeEEEeecCCCccEEEEEecCCCeEEEeCCC---CCeEEEeecccCCeEEEEECC-CCCeeEEeeCCCeEEEEECCCCCE
Q 018860 20 VDLFYSPITPDGFFLISASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDT-NALRAASASADFSAKVWDALTGDV 95 (349)
Q Consensus 20 ~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~ 95 (349)
.+|.|.. .+.++||+++..|.|.+||+.. .+.+..|..|...|.++.|++ ...+|+|||.||+||+||++..+-
T Consensus 91 ~DVkW~~--~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 91 ADVKWGQ--LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hhccccc--chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4667763 4677999999999999999865 556778899999999999987 456899999999999999988776
Q ss_pred EEEec-cCCeEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 018860 96 LHSFE-HKHIVRACSFSE-DTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173 (349)
Q Consensus 96 ~~~~~-~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vw 173 (349)
..++. ....|+.+.|+| .++.++++...|.+++||++.++.....+..|.+++.++.|+| ++.+|+||+.|++|+||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIW 247 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEE
Confidence 65554 567899999999 5889999999999999999999988888999999999999998 77889999999999999
Q ss_pred ECCCCc--eEEeecCCCCeeEEEEcCCCcE-EE-Ee--cCCeEEEEecCC-ceeeEEEcC-CCceEEeeecCCCCCEEEE
Q 018860 174 DVRSGE--IVQTLETKSPVTSAEVSQDGRY-IT-TA--DGSTVKFWDANH-FGLVKSYNM-PCTIESASLEPKYGNKFVA 245 (349)
Q Consensus 174 d~~~~~--~~~~~~~~~~v~~~~~~~~~~~-l~-~~--~d~~i~iwd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 245 (349)
|+.+++ ...++....++..+.|-|...+ |+ ++ .|-.|.+||++. +-+...+.. ...+..++|...+...+.+
T Consensus 248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 248 DMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred eccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 998654 4567777789999999998754 33 33 378899999964 444455443 3345667787766677889
Q ss_pred ecCCCeEEEEeCC
Q 018860 246 GGEDMWVRFFDFH 258 (349)
Q Consensus 246 ~~~d~~i~v~d~~ 258 (349)
++.|+++..-..+
T Consensus 328 ~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 328 CSKDGTVLQHLFK 340 (839)
T ss_pred ecCccHHHHhhhh
Confidence 9999987654443
No 117
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.9e-24 Score=183.91 Aligned_cols=276 Identities=16% Similarity=0.247 Sum_probs=214.2
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeC--CCCCeEEEeecccCCeEEEEECCCCC-eeEEeeCCCeEEEEECCCC
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNG--ETGDWIGTFEGHKGAVWSCCLDTNAL-RAASASADFSAKVWDALTG 93 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~--~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~ 93 (349)
++|++|.|+| ....|++|+.|++++||.. +....++++.--+-+|.+++|.|+|. .++++|.......||+.+.
T Consensus 214 ~~I~sv~FHp---~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 214 GGITSVQFHP---TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CCceEEEecC---CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 5789999998 6678999999999999954 45567888888889999999999999 8999999999999999887
Q ss_pred CEEEEec---c-CCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 018860 94 DVLHSFE---H-KHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG 169 (349)
Q Consensus 94 ~~~~~~~---~-~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 169 (349)
+....-. + ...+.....+|++++|+..|..|.|.+....+.... ..+ .-.+.+..+.|+.++..++++|+ +|.
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli-~s~-KieG~v~~~~fsSdsk~l~~~~~-~Ge 367 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI-TSF-KIEGVVSDFTFSSDSKELLASGG-TGE 367 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh-hee-eeccEEeeEEEecCCcEEEEEcC-Cce
Confidence 6544322 2 235677888999999999999999999887554322 111 23567889999976666666555 599
Q ss_pred EEEEECCCCceEEeecCCCC--eeEEEEcCCCcEEEEec-CCeEEEEecCC------ceeeEEE-cCCCceEEeeecCCC
Q 018860 170 VRLWDVRSGEIVQTLETKSP--VTSAEVSQDGRYITTAD-GSTVKFWDANH------FGLVKSY-NMPCTIESASLEPKY 239 (349)
Q Consensus 170 v~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~-d~~i~iwd~~~------~~~~~~~-~~~~~~~~~~~~~~~ 239 (349)
|.+||+++..+++.+..... -++++.++++.+++++. .|.|.|||.++ .+++..+ +....+..+.|+++
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d- 446 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD- 446 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc-
Confidence 99999999999998865444 35677789999998876 58999999653 2333322 23345778888884
Q ss_pred CCEEEEec--CCCeEEEEeCCCCcEEEEecC---CCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 240 GNKFVAGG--EDMWVRFFDFHTGNEIACNKG---HHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 240 ~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~---h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
.+.++.++ .+..+|+-.+.+......+.. --+.|+||+|||.+.+||.|-.+|.+.+|.+
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 77777766 577899988877666544432 2356899999999999999999999999975
No 118
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=8.7e-25 Score=190.20 Aligned_cols=248 Identities=20% Similarity=0.302 Sum_probs=188.6
Q ss_pred CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEE----EEec--cCCeEEEEEEcCCCCEEEEEeCCCe
Q 018860 52 DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVL----HSFE--HKHIVRACSFSEDTHLLLTGGMEKI 125 (349)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~----~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~ 125 (349)
.+-..+++|+..|.+++++|.|-+|+|||.|-+|++||+...... +.+. ..+.|++++|++.|..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 344578899999999999999999999999999999998765432 2222 3467999999999999999888889
Q ss_pred EEEEECCCCC--------CCC---ceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eEEeecC------C
Q 018860 126 LRIFDLNRPD--------APP---REVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGE-IVQTLET------K 187 (349)
Q Consensus 126 i~lwd~~~~~--------~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~------~ 187 (349)
++|+|-+... ... ....+|...+++.+|+|.....|++|+.||++|+||+...+ ..+.+.+ .
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 9999954321 111 23457777889999999999899999999999999997643 3333322 2
Q ss_pred CCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceee-----EE-EcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCC
Q 018860 188 SPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLV-----KS-YNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTG 260 (349)
Q Consensus 188 ~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~ 260 (349)
-++..+.|++++.++++ +.||.|.+|+.+..... +. +.-...+.++.|++ ++++|++-+.|+++++||++..
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeecccc
Confidence 36888999999999876 46999999998654321 11 11123578899998 4999999999999999999876
Q ss_pred cE-EEEecCC--CcceeEEEEccCCCeEEEec------CCCCEEEecCC
Q 018860 261 NE-IACNKGH--HGPVHCVRFSPGGESYASGS------EDGTIRIWQTG 300 (349)
Q Consensus 261 ~~-~~~~~~h--~~~i~~l~~sp~~~~l~sgs------~Dg~v~vW~~~ 300 (349)
+. +....+- ..+-+.++|||+.++|++|. .-|++.+++.-
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 54 3332221 24567889999999999875 46678888753
No 119
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.6e-25 Score=200.97 Aligned_cols=204 Identities=21% Similarity=0.343 Sum_probs=167.2
Q ss_pred cceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECC-CCCeeEEeeCCCeEE
Q 018860 8 VPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDT-NALRAASASADFSAK 86 (349)
Q Consensus 8 ~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~ 86 (349)
.+++|.||.+.|.+|.|| .+++|+|+|.|.|+|+|.+...++++.|. |.+-|+|++|+| |.+|++||+-|+.||
T Consensus 361 P~~ef~GHt~DILDlSWS----Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 361 PFCEFKGHTADILDLSWS----KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVR 435 (712)
T ss_pred chhhhhccchhheecccc----cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceE
Confidence 356778999999999998 57799999999999999999999999996 999999999998 788999999999999
Q ss_pred EEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc--------eeccCCCCeEEEEEecCCC
Q 018860 87 VWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR--------EVDRSPGSVRTVAWLHSDQ 158 (349)
Q Consensus 87 vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~ 158 (349)
||++...+.+.-..-...|++++|.|||+..+.|+.+|.+++|+....+.... .-..+. .|+.+.|.|.+.
T Consensus 436 iWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 436 LWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDP 514 (712)
T ss_pred EeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCC
Confidence 99998877776666678999999999999999999999999999764332110 011122 699999998766
Q ss_pred e-EEEEeeCCCeEEEEECCCCceEEeecCC---CCeeEEEEcCCCcEEEE-ecCCeEEEEecCCc
Q 018860 159 T-ILSTCTDMGGVRLWDVRSGEIVQTLETK---SPVTSAEVSQDGRYITT-ADGSTVKFWDANHF 218 (349)
Q Consensus 159 ~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~ 218 (349)
. +|+|. .|..|||+|.+...+++.+.+. ..-....|+.||+++++ ++|..|.+|+....
T Consensus 515 ~~vLVTS-nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 515 DEVLVTS-NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CeEEEec-CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 5 55555 4589999999988888887642 23356788889998765 56899999997543
No 120
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=9.4e-24 Score=169.96 Aligned_cols=242 Identities=19% Similarity=0.242 Sum_probs=190.6
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEee-----CCCeE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASAS-----ADFSA 85 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-----~D~~i 85 (349)
++.||++.|.||+-+. +.++|++||+|.++++||.++|+.+.+++- ..+|..+.|+.++.+++.+. ..+.|
T Consensus 47 ty~GHtGavW~~Did~---~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v 122 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDIDW---DSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFV 122 (327)
T ss_pred eecCCCceEEEEEecC---CcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEE
Confidence 4579999999998775 788999999999999999999999999985 45799999999998777653 34679
Q ss_pred EEEECC-------CCCEEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCC
Q 018860 86 KVWDAL-------TGDVLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSD 157 (349)
Q Consensus 86 ~vWd~~-------~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 157 (349)
-++|+. +.++.+.+ .+...++..-|.|-++.|++|..||.|..||+.++.........|...|+.+.++++
T Consensus 123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d- 201 (327)
T KOG0643|consen 123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD- 201 (327)
T ss_pred EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC-
Confidence 999987 34445554 366789999999999999999999999999998766555555667789999998865
Q ss_pred CeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCC---eEEEEecCCcee------------e-
Q 018860 158 QTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGS---TVKFWDANHFGL------------V- 221 (349)
Q Consensus 158 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~---~i~iwd~~~~~~------------~- 221 (349)
..++.+++.|.+-++||.++-++++++....|+++.+++|-...++.+.+. .|.-=+.+.++. +
T Consensus 202 ~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 202 RTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred cceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence 456668888899999999999999999999999999999977666554322 222222222211 1
Q ss_pred EEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCC
Q 018860 222 KSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFH 258 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 258 (349)
+...+-.++.+++|+|+ +..+++|+.||.||+.-..
T Consensus 282 rvkGHFGPINsvAfhPd-GksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 282 RVKGHFGPINSVAFHPD-GKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccccCcceeEECCC-CcccccCCCCceEEEEEec
Confidence 11233456889999995 8999999999999987543
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.5e-24 Score=186.10 Aligned_cols=205 Identities=20% Similarity=0.324 Sum_probs=169.5
Q ss_pred eeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC-------CeEEEeecccCCeEEEEECCC-CCeeEEeeC
Q 018860 10 LVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDTN-ALRAASASA 81 (349)
Q Consensus 10 ~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~ 81 (349)
+.|.||++.-..+.|++... -+|++++.|++|++||.... .....+.+|...|..|+|++- ...+++++.
T Consensus 171 l~L~gH~~eg~glsWn~~~~--g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQE--GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred eEEEeecccccccccccccc--eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC
Confidence 57789999888999998644 37999999999999997543 235778999999999999874 457889999
Q ss_pred CCeEEEEECCC--CCEEEEe-ccCCeEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCC
Q 018860 82 DFSAKVWDALT--GDVLHSF-EHKHIVRACSFSE-DTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSD 157 (349)
Q Consensus 82 D~~i~vWd~~~--~~~~~~~-~~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 157 (349)
|+.+.|||.++ .++.+.. .|...|.+++|+| ++..|||||.|++++|||+++...+...+.+|...|..+.|+|..
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 99999999994 3444443 4889999999999 677889999999999999998888888999999999999999999
Q ss_pred CeEEEEeeCCCeEEEEECCC-CceE-----------Eee---cCCCCeeEEEEcCCCcEEEE--ecCCeEEEEecC
Q 018860 158 QTILSTCTDMGGVRLWDVRS-GEIV-----------QTL---ETKSPVTSAEVSQDGRYITT--ADGSTVKFWDAN 216 (349)
Q Consensus 158 ~~~l~~~~~dg~v~vwd~~~-~~~~-----------~~~---~~~~~v~~~~~~~~~~~l~~--~~d~~i~iwd~~ 216 (349)
..+|++++.|+.+.|||+.. ++.. -.| .|...|..+.|+|+.-++.+ ++|+.+.||...
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99999999999999999864 2211 012 23457889999999877654 468999999875
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=8.3e-24 Score=188.38 Aligned_cols=280 Identities=18% Similarity=0.295 Sum_probs=200.0
Q ss_pred eEEEeecCCCccEEEEEecCCCeEEEeCCCCCeE------EEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCC
Q 018860 21 DLFYSPITPDGFFLISASKDSSPMLRNGETGDWI------GTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGD 94 (349)
Q Consensus 21 ~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~------~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~ 94 (349)
++.|++.....+.|+.+..||.|.++|.....+- ..+..|...|..+.|.|-...|++++.|.++|+||+++.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 4788887777889999999999999997654332 4456799999999999977789999999999999999988
Q ss_pred EEEE---eccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCC-------------------CC-------ceeccC
Q 018860 95 VLHS---FEHKHIVRACSFSED-THLLLTGGMEKILRIFDLNRPDA-------------------PP-------REVDRS 144 (349)
Q Consensus 95 ~~~~---~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~-------------------~~-------~~~~~~ 144 (349)
+... +.|...|.+++|.|. -..+++|+.|+.|.|||++-... +. +.-..+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 7654 579999999999995 56788999999999999863320 00 000112
Q ss_pred CCCeEE---EEEecCCCeEEEEeeCCCeEEEEECCCCceEEee--------cCC----CCeeEEEEcCCCcEEE-EecCC
Q 018860 145 PGSVRT---VAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTL--------ETK----SPVTSAEVSQDGRYIT-TADGS 208 (349)
Q Consensus 145 ~~~i~~---~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------~~~----~~v~~~~~~~~~~~l~-~~~d~ 208 (349)
...|.+ +.++.++..++.++..|+.|+|||+|........ ..+ ..+.++.....|.+|. .+.|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 222333 3334344444444444899999999976543221 111 1355566666666654 46799
Q ss_pred eEEEEecCCceee--EEEcCC--Cce-EEeeecCCCCCEEEEecCCCeEEEEeCCCCcE-EEEecCCCcceeEEEEccCC
Q 018860 209 TVKFWDANHFGLV--KSYNMP--CTI-ESASLEPKYGNKFVAGGEDMWVRFFDFHTGNE-IACNKGHHGPVHCVRFSPGG 282 (349)
Q Consensus 209 ~i~iwd~~~~~~~--~~~~~~--~~~-~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~h~~~i~~l~~sp~~ 282 (349)
.|.+|++...... ..+... ..+ ......| ++.++++|+.|...++|.+.+.+. ...+.+|...|++++|.|..
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 9999999765422 112111 111 2233445 588999999999999999987665 45678999999999998864
Q ss_pred C-eEEEecCCCCEEEecCCC
Q 018860 283 E-SYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 283 ~-~l~sgs~Dg~v~vW~~~~ 301 (349)
. -++++|.|-.+++|++.+
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred CCCceeeccCcceEEEeccC
Confidence 3 377789999999999854
No 123
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3e-23 Score=170.18 Aligned_cols=241 Identities=21% Similarity=0.366 Sum_probs=179.7
Q ss_pred ecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCC----EEEEe-ccCCeEEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 018860 58 EGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGD----VLHSF-EHKHIVRACSFSE--DTHLLLTGGMEKILRIFD 130 (349)
Q Consensus 58 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~----~~~~~-~~~~~v~~~~~s~--~~~~l~s~~~d~~i~lwd 130 (349)
.+|++-|.++.|++-|+++||||.|++|+|||..... +.... .|.+.|..+.|.+ -|+.+|+++.|+++++|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4699999999999999999999999999999965443 22333 3888888888854 489999999999999998
Q ss_pred CCCCC--CC------CceeccCCCCeEEEEEecCC-CeEEEEeeCCCeEEEEECCCCc------eEEeec--------CC
Q 018860 131 LNRPD--AP------PREVDRSPGSVRTVAWLHSD-QTILSTCTDMGGVRLWDVRSGE------IVQTLE--------TK 187 (349)
Q Consensus 131 ~~~~~--~~------~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~------~~~~~~--------~~ 187 (349)
-.... .. ...+......++.+.|.|.. +..+++++.||.+|||+....- .++.+. .+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 53111 11 12344566789999999854 6678899999999999875432 122222 34
Q ss_pred CCeeEEEEcCCC---cEEEEecCC------eEEEEecCCce--e--eEEE-cCCCceEEeeecCCCCC---EEEEecCCC
Q 018860 188 SPVTSAEVSQDG---RYITTADGS------TVKFWDANHFG--L--VKSY-NMPCTIESASLEPKYGN---KFVAGGEDM 250 (349)
Q Consensus 188 ~~v~~~~~~~~~---~~l~~~~d~------~i~iwd~~~~~--~--~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~d~ 250 (349)
.+..++.|+|.. .+++.+.+. .+.||...... . +..+ .+.+.+..++|.|.-++ .+++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 567888898754 456655444 78888765432 2 2222 34567889999987654 578899999
Q ss_pred eEEEEeCCCC--------------------cEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 251 WVRFFDFHTG--------------------NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 251 ~i~v~d~~~~--------------------~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
|+||.+... +.+..+.+|.+.|+.+.|+-.|..|+|.|.||+||+|..
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 999998731 234456789999999999999999999999999999975
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.5e-23 Score=190.07 Aligned_cols=276 Identities=15% Similarity=0.220 Sum_probs=215.9
Q ss_pred eeec-cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC-CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEE
Q 018860 10 LVCH-GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKV 87 (349)
Q Consensus 10 ~~~~-gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~v 87 (349)
+.+| +|+..-+.|+|.| +|.+|++++.|+.|++|+..+- +...++.-|...|.+++... .+|++|+.+++|.+
T Consensus 6 ~klRyaht~G~t~i~~d~---~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 6 LKLRYAHTGGLTLICYDP---DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLR 80 (933)
T ss_pred ccchhhccCceEEEEEcC---CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEE
Confidence 3443 6998889999987 8999999999999999986655 55556665777887776654 48999999999999
Q ss_pred EECCCCCEEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeC
Q 018860 88 WDALTGDVLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTD 166 (349)
Q Consensus 88 Wd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 166 (349)
+.+.+++.-..+ +..-+++.++|+.+|++++.||.|-.|++-++.... ..+.+.+|.++|.++.|.|.+. +|++++-
T Consensus 81 y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~~~p~~~-fLAvss~ 158 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLSYDPKGN-FLAVSSC 158 (933)
T ss_pred eeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeeeEcCCCC-EEEEEec
Confidence 999888654332 234578999999999999999999999999986533 4567889999999999987655 5566666
Q ss_pred CCeEEEEECCCCceEEeecC---------CCCeeEEEEcCC-CcEEEEecCCeEEEEecCCceeeEEEcC---CCceEEe
Q 018860 167 MGGVRLWDVRSGEIVQTLET---------KSPVTSAEVSQD-GRYITTADGSTVKFWDANHFGLVKSYNM---PCTIESA 233 (349)
Q Consensus 167 dg~v~vwd~~~~~~~~~~~~---------~~~v~~~~~~~~-~~~l~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~ 233 (349)
||+|++||+.++.+.+++.. ...+..++|+|+ |.+++.+.++.|++|+...+.....+.. ...+..+
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence 79999999999987766532 235678899999 6777888999999999998876655533 2347888
Q ss_pred eecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEe
Q 018860 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW 297 (349)
.|+|. |.|+|+++.||.|-|||+.+.+. ......|.+++|.|+.+-+-.-..-|+.-+|
T Consensus 239 ~wsPn-G~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 239 QWSPN-GKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEcCC-CcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99996 99999999999999999987322 2234689999999998765443444444444
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=6e-23 Score=184.49 Aligned_cols=295 Identities=20% Similarity=0.321 Sum_probs=212.4
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCC---------------------eEEEe--------
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGD---------------------WIGTF-------- 57 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~---------------------~~~~~-------- 57 (349)
..-+++.||.+=|.+++|+-...+.-+|+|+|+|..||||.+.-+. ...++
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 3456788999999999999876667799999999999999632111 11122
Q ss_pred --ecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCC----EEEEe---c-cCCeEEEEEEcCCCCEEEEEeCCCeEE
Q 018860 58 --EGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGD----VLHSF---E-HKHIVRACSFSEDTHLLLTGGMEKILR 127 (349)
Q Consensus 58 --~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~----~~~~~---~-~~~~v~~~~~s~~~~~l~s~~~d~~i~ 127 (349)
-||.+.|+++.|+|.+..|+|+|.|.++-+|...+.. ....+ . .......+.|+|+++.+++-+.-|..+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 3999999999999999999999999999999875541 11122 1 233578899999999999999999999
Q ss_pred EEECCCCC--CCCceeccCCCCeEEEEEecCCCeEEEEeeC---------------------------------------
Q 018860 128 IFDLNRPD--APPREVDRSPGSVRTVAWLHSDQTILSTCTD--------------------------------------- 166 (349)
Q Consensus 128 lwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--------------------------------------- 166 (349)
+|....+. .+.....+|.+.|+.++|.|.+..+|+++.|
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 99832211 1223456788888888887776655544332
Q ss_pred ------CCeEEEEECCC-------------------------------------------Cce----EEe----------
Q 018860 167 ------MGGVRLWDVRS-------------------------------------------GEI----VQT---------- 183 (349)
Q Consensus 167 ------dg~v~vwd~~~-------------------------------------------~~~----~~~---------- 183 (349)
++.+|+|+... |.. ..+
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 22334442110 000 000
Q ss_pred -------------------e-cCCCCeeEEEEcCCCcEEEEec------CCeEEEEecCCceeeEEE-cCCCceEEeeec
Q 018860 184 -------------------L-ETKSPVTSAEVSQDGRYITTAD------GSTVKFWDANHFGLVKSY-NMPCTIESASLE 236 (349)
Q Consensus 184 -------------------~-~~~~~v~~~~~~~~~~~l~~~~------d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~ 236 (349)
+ .|...+.+++.+|++++++++- ...|++|+..+......+ .+.-.+..+.|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 0 0112356778888998887642 236999999887666533 344568889999
Q ss_pred CCCCCEEEEecCCCeEEEEeCCCCcE----EEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 237 PKYGNKFVAGGEDMWVRFFDFHTGNE----IACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 237 ~~~~~~~~~~~~d~~i~v~d~~~~~~----~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
|+ +++|++.+.|+++.+|....... ....+.|+.-|+++.|+|++.+|+|+|.|++|++|.....
T Consensus 582 pd-g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 582 PD-GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CC-CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 85 89999999999999998743322 3346889999999999999999999999999999987654
No 126
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.8e-23 Score=182.99 Aligned_cols=280 Identities=20% Similarity=0.268 Sum_probs=207.4
Q ss_pred eeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCe-eEEeeCCCeEEEE
Q 018860 10 LVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALR-AASASADFSAKVW 88 (349)
Q Consensus 10 ~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~D~~i~vW 88 (349)
++++||++.|++|.-.| .|..|+|||.||++|||-..++.+++++.-- +.|.|++|+|.+.. ++.++.+.++-|-
T Consensus 394 lvyrGHtg~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEe
Confidence 57799999999997665 8999999999999999999999999888643 46999999886542 2222222233333
Q ss_pred ECCCC------------------------------------C--EEEEeccCCeEEEEEEcCCCCEEEEEeC---CCeEE
Q 018860 89 DALTG------------------------------------D--VLHSFEHKHIVRACSFSEDTHLLLTGGM---EKILR 127 (349)
Q Consensus 89 d~~~~------------------------------------~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~ 127 (349)
|..-| + .-..+.|...|+.+.||..|.+|++... ...|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32111 0 1123457888999999999999999764 45678
Q ss_pred EEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCCcEE-EEe
Q 018860 128 IFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYI-TTA 205 (349)
Q Consensus 128 lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~ 205 (349)
+.++...... ..+....+.+.++.|+|...+++++. . ..||+||+..+..++.+... ..+..++++|.|.-| +++
T Consensus 550 iHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaT-q-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVAT-Q-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEeccccccc-CchhhcCCceeEEEecCCCceEEEEe-c-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 8888654432 45556678899999998887777544 3 68999999888777776554 358889999988554 556
Q ss_pred cCCeEEEEecCCc-eeeEEEcC-CCceEEeeecCCCCCEEEEecCCCeEEEEeCCC------C---cEEEEecCCCcc--
Q 018860 206 DGSTVKFWDANHF-GLVKSYNM-PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHT------G---NEIACNKGHHGP-- 272 (349)
Q Consensus 206 ~d~~i~iwd~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~------~---~~~~~~~~h~~~-- 272 (349)
.|+.+-.+|+.-. ++.+.+.+ ..-+..++|++. -.+|++|+.|+++.||--.- . -.++.+++|...
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~ 705 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND 705 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence 6899999998643 23333333 234567888875 46899999999999985321 1 135667899766
Q ss_pred --eeEEEEccCCCeEEEecCCCCEEEe
Q 018860 273 --VHCVRFSPGGESYASGSEDGTIRIW 297 (349)
Q Consensus 273 --i~~l~~sp~~~~l~sgs~Dg~v~vW 297 (349)
|..+.|+|...+|.|++.||+|++|
T Consensus 706 ~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 706 LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cceEeecccCCCceEEecCCCceEEee
Confidence 8999999999999999999999999
No 127
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=7.4e-24 Score=173.93 Aligned_cols=242 Identities=17% Similarity=0.224 Sum_probs=182.3
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeec--ccCCeEEEEECCCCCeeEEeeCCCeEEEEE
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDTNALRAASASADFSAKVWD 89 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd 89 (349)
|--|.++|+++.|+| ..++|+|||+|++++++|.......+.++- -..+|.++.|+|.|.+|+.|-.-.++|+||
T Consensus 168 lYDH~devn~l~FHP---re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYd 244 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHP---RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYD 244 (430)
T ss_pred hhhccCcccceeecc---hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEe
Confidence 347999999999998 678999999999999999875544444432 346799999999999999999999999999
Q ss_pred CCCCCEEEEe----ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCC-CCeEEEEEecCCCeEEEEe
Q 018860 90 ALTGDVLHSF----EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSP-GSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 90 ~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~ 164 (349)
+++.+|...- +|...|+++.+++.+++-++|+.||.|++||--........-..|. .+|.+..|..+ +.+++++
T Consensus 245 v~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn-~kyiLsS 323 (430)
T KOG0640|consen 245 VNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN-GKYILSS 323 (430)
T ss_pred ccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC-CeEEeec
Confidence 9999887654 3788999999999999999999999999999544332222223343 35777777654 5555566
Q ss_pred eCCCeEEEEECCCCceEEeecCCCC------eeEEEEcCCCcEEEEec--CCeEEEEecCCceeeEEE--cCCCceEEee
Q 018860 165 TDMGGVRLWDVRSGEIVQTLETKSP------VTSAEVSQDGRYITTAD--GSTVKFWDANHFGLVKSY--NMPCTIESAS 234 (349)
Q Consensus 165 ~~dg~v~vwd~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~--d~~i~iwd~~~~~~~~~~--~~~~~~~~~~ 234 (349)
+.|..+++|.+.+++++....+.+. -+...|+....++..-+ .+.+--||.++...+..+ .++..+..+.
T Consensus 324 G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~ 403 (430)
T KOG0640|consen 324 GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIV 403 (430)
T ss_pred CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEE
Confidence 6779999999999999988754311 12334555555655443 456778999887655444 4444556666
Q ss_pred ecCCCCCEEEEecCCCeEEEEeCC
Q 018860 235 LEPKYGNKFVAGGEDMWVRFFDFH 258 (349)
Q Consensus 235 ~~~~~~~~~~~~~~d~~i~v~d~~ 258 (349)
-+|. +..|++|+.|..+|+|--+
T Consensus 404 HSP~-~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 404 HSPV-EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eCCC-CCceeeecccceeeeeeec
Confidence 6664 7789999999999999643
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=9.7e-22 Score=170.97 Aligned_cols=273 Identities=20% Similarity=0.265 Sum_probs=211.5
Q ss_pred CCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeE---EEeeccc-CCeEEEEECCCCCeeEEeeCCCeEEEEECC
Q 018860 16 SRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWI---GTFEGHK-GAVWSCCLDTNALRAASASADFSAKVWDAL 91 (349)
Q Consensus 16 ~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~---~~~~~h~-~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~ 91 (349)
.+.|..+.|.|.+++ .++++++ +.+.+|..+.+.+. ..++.+. .-|.|++|.+++. ++||..+|.|.||+..
T Consensus 200 ne~v~~a~FHPtd~n--liit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPN--LIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG 275 (626)
T ss_pred cceEEEEEeccCCCc--EEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC
Confidence 345678899997655 6777765 88999998887653 4555553 5699999999996 8999999999999987
Q ss_pred CCCEEEE-eccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 018860 92 TGDVLHS-FEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGV 170 (349)
Q Consensus 92 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v 170 (349)
+.+..+. +.|.+.|.+++.-.+|.++ ||+.|+.|..||-+-.+....++....+.++.++-. .+.+++ |...+.|
T Consensus 276 ~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~--~~di~v-GTtrN~i 351 (626)
T KOG2106|consen 276 TNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEG--KGDILV-GTTRNFI 351 (626)
T ss_pred CceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecC--CCcEEE-eeccceE
Confidence 7665544 3699999999999999755 599999999999443333444556667788888633 333444 4444677
Q ss_pred EEEECCCCceEEeecCCCCeeEEEEcCCC-cEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCC
Q 018860 171 RLWDVRSGEIVQTLETKSPVTSAEVSQDG-RYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGED 249 (349)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 249 (349)
..=.+.++-.+..+.+......++.+|+. ++++++.|+.+++|+ ..+++-+........++.|+|. + .++.|...
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhps-g-~va~Gt~~ 427 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPS-G-VVAVGTAT 427 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCc-c-eEEEeecc
Confidence 66677766666666666678888888876 566778899999999 4455555555566788999996 4 89999999
Q ss_pred CeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 250 MWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 250 ~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
|...+.|.++...+..... +.++++++|+|+|.+||.||.|+.|+||.++.
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred ceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 9999999999777766555 89999999999999999999999999998753
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4.3e-24 Score=185.40 Aligned_cols=240 Identities=20% Similarity=0.351 Sum_probs=194.2
Q ss_pred cccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCC---EEE---EeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 018860 59 GHKGAVWSCCLDTNALRAASASADFSAKVWDALTGD---VLH---SFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132 (349)
Q Consensus 59 ~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~---~~~---~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~ 132 (349)
.|...|.++.++...+.+.||| .|.|||||+.... .+. .+...+.++++.+.|||+.|++||.-.++-+||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 4888888899999988999988 5689999986532 122 22355789999999999999999999999999998
Q ss_pred CCCCCCce-eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCCcEE-EEecCCe
Q 018860 133 RPDAPPRE-VDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYI-TTADGST 209 (349)
Q Consensus 133 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~d~~ 209 (349)
.+....+. +....-.+.+++.+|+....|++| .||.|+|||+++...+..+.++ ..+.++.+++||..| +++-|.+
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFscc-sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCC-SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeec-cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 76544332 222223466777776655555555 4599999999999999999864 578999999999655 6677999
Q ss_pred EEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEec
Q 018860 210 VKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS 289 (349)
Q Consensus 210 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs 289 (349)
||.||++..+.+..+.+..++.++..+|. +..++.|-.++.+.+......+. ..+.-|..-|.++.|.+.|++++|.+
T Consensus 575 vRcWDlregrqlqqhdF~SQIfSLg~cP~-~dWlavGMens~vevlh~skp~k-yqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDFSSQIFSLGYCPT-GDWLAVGMENSNVEVLHTSKPEK-YQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred eeehhhhhhhhhhhhhhhhhheecccCCC-ccceeeecccCcEEEEecCCccc-eeecccccEEEEEEecccCceeeecC
Confidence 99999999999988988999999999986 78899999999998887765444 34556889999999999999999999
Q ss_pred CCCCEEEecCCCC
Q 018860 290 EDGTIRIWQTGPV 302 (349)
Q Consensus 290 ~Dg~v~vW~~~~~ 302 (349)
.|..+..|.+.-+
T Consensus 653 kDnlLnawrtPyG 665 (705)
T KOG0639|consen 653 KDNLLNAWRTPYG 665 (705)
T ss_pred chhhhhhccCccc
Confidence 9999999998544
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.2e-23 Score=186.08 Aligned_cols=244 Identities=23% Similarity=0.342 Sum_probs=192.9
Q ss_pred eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCC--EEEEEeCCCeEEEEE
Q 018860 53 WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTH--LLLTGGMEKILRIFD 130 (349)
Q Consensus 53 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~i~lwd 130 (349)
+-..++||++.|.++..++.|.+|++|+.||+||||.+.+|.|++++.....|++++|+|.+. .||++-.+. +-+-+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeC
Confidence 446779999999999999999999999999999999999999999999999999999999765 344333322 33332
Q ss_pred CCCC---------------------------------C---CCCceeccCCCCeEEEEEecCCCeEEEEeeCC--CeEEE
Q 018860 131 LNRP---------------------------------D---APPREVDRSPGSVRTVAWLHSDQTILSTCTDM--GGVRL 172 (349)
Q Consensus 131 ~~~~---------------------------------~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~v~v 172 (349)
..-+ + ........|...|+.+.|+..+.++...+.+. ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 1100 0 00123456778899999998777776555433 47889
Q ss_pred EECCCCceEEee-cCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCc-eEEeeecCCCCCEEEEecCCC
Q 018860 173 WDVRSGEIVQTL-ETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCT-IESASLEPKYGNKFVAGGEDM 250 (349)
Q Consensus 173 wd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ 250 (349)
.++..++.+.-+ ..++.+.++.|+|...++..+....|++||+..+.+++.+...+. +..++++|. |..++.++.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~-GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN-GDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCC-CCeEEEecCCC
Confidence 998776655555 345678899999999888888889999999988777766555443 567788875 88899999999
Q ss_pred eEEEEeCCCC-cEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 251 WVRFFDFHTG-NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 251 ~i~v~d~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
.+.+||+.-+ +..++++.|...+++++|++.-.+++|||.||++.|+-
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 9999999754 45678889999999999999999999999999999984
No 131
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.2e-23 Score=168.39 Aligned_cols=258 Identities=16% Similarity=0.261 Sum_probs=177.7
Q ss_pred eEEEeCCCCCe-----EEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCE--EEEec---cCCeEEEEEEcC
Q 018860 43 PMLRNGETGDW-----IGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDV--LHSFE---HKHIVRACSFSE 112 (349)
Q Consensus 43 i~iw~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~--~~~~~---~~~~v~~~~~s~ 112 (349)
++-|+....+. +..++||.+.|++++|+.||++|+|++.|++||||++...+. .+.+. ..+-.+.+.|+|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap 142 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP 142 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence 34565554443 356789999999999999999999999999999999876431 11111 112357889999
Q ss_pred CCCE-EEEEeCCCeEEEEECCCCCCCCc-----------eeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce
Q 018860 113 DTHL-LLTGGMEKILRIFDLNRPDAPPR-----------EVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEI 180 (349)
Q Consensus 113 ~~~~-l~s~~~d~~i~lwd~~~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 180 (349)
|-.- +++.-...++++|.+...+.... .-..|.-.+..+.. ..+..++++++.|.+|.+|+++ |+.
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-Cce
Confidence 8654 45556777899998754322110 11223334455543 4667888899999999999999 888
Q ss_pred EEeecCCC-CeeEEEEcCCCcEEEEe-cCCeEEEEecCC---c--e-eeEEE---cCCCceEEeeecCCCCCEEEEecCC
Q 018860 181 VQTLETKS-PVTSAEVSQDGRYITTA-DGSTVKFWDANH---F--G-LVKSY---NMPCTIESASLEPKYGNKFVAGGED 249 (349)
Q Consensus 181 ~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~---~--~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d 249 (349)
+.++..+. .....+++|+|++++++ --.-|++|.+-- + + ..+.+ .+...+.+++|+++ ...+++.+.|
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~-S~r~vtvSkD 299 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS-STRAVTVSKD 299 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC-cceeEEEecC
Confidence 88887653 45667899999998765 467799998631 1 1 11222 33456788899985 7889999999
Q ss_pred CeEEEEeCCCC----cEEEEec-------CCCcceeEEEEccCCCeEEEecCCCCEEEecCCCCCC
Q 018860 250 MWVRFFDFHTG----NEIACNK-------GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTN 304 (349)
Q Consensus 250 ~~i~v~d~~~~----~~~~~~~-------~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~~ 304 (349)
|++|+||+.-. +..+.++ ...+.-..|+++|+|+.|| .|....|+++....+..
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA-~s~gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLA-VSFGSDLKVFASEDGKD 364 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEE-eecCCceEEEEcccCcc
Confidence 99999997531 1111111 1223334899999999886 45566899998776543
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3e-23 Score=177.73 Aligned_cols=233 Identities=23% Similarity=0.307 Sum_probs=181.0
Q ss_pred CCccEEEEEecCCCeEEEeCCCC---CeEEE------------------eecccCCeEEEEECCCC-CeeEEeeCCCeEE
Q 018860 29 PDGFFLISASKDSSPMLRNGETG---DWIGT------------------FEGHKGAVWSCCLDTNA-LRAASASADFSAK 86 (349)
Q Consensus 29 ~~~~~l~s~s~d~~i~iw~~~~~---~~~~~------------------~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~ 86 (349)
.-|+|+|.|+.|-.|.|||+.-. .+..+ -.+|+..|..++|...- ..|||||.|.+|+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 34789999999999999985421 11111 23799999888887643 4799999999999
Q ss_pred EEECCCCCEEEEec-cCCeEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEe
Q 018860 87 VWDALTGDVLHSFE-HKHIVRACSFSE-DTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 87 vWd~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 164 (349)
+||+.+|++..++. |...|+++.|+| ....|++|+.|+++++.|++.+...... ....+.|-.++|.|.....+..+
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~-wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE-WKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce-EEeccceEEEEecCCCceeEEEe
Confidence 99999999999998 778999999998 4688999999999999999864433332 23456789999999999999999
Q ss_pred eCCCeEEEEECCCC-ceEEeecC-CCCeeEEEEcCCC--cEEEEecCCeEEEEecCCceeeEEE--cCC-CceEEeeecC
Q 018860 165 TDMGGVRLWDVRSG-EIVQTLET-KSPVTSAEVSQDG--RYITTADGSTVKFWDANHFGLVKSY--NMP-CTIESASLEP 237 (349)
Q Consensus 165 ~~dg~v~vwd~~~~-~~~~~~~~-~~~v~~~~~~~~~--~~l~~~~d~~i~iwd~~~~~~~~~~--~~~-~~~~~~~~~~ 237 (349)
.+||+|+-+|+|+. +++-++.. ..+|..+++++.. .+.+++.++.+++|++....+.... .+. ....++++.|
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCC
Confidence 99999999999975 77777764 5689999998764 3345567999999998654332222 111 1245667777
Q ss_pred CCCCEEEEecCCCeEEEEeCCCCcE
Q 018860 238 KYGNKFVAGGEDMWVRFFDFHTGNE 262 (349)
Q Consensus 238 ~~~~~~~~~~~d~~i~v~d~~~~~~ 262 (349)
...-.++.||..+.+++||+.+...
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CcceEEEecCccceEEEeecccChh
Confidence 7777889999999999999877554
No 133
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=8e-23 Score=183.10 Aligned_cols=269 Identities=20% Similarity=0.323 Sum_probs=206.4
Q ss_pred ceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEE
Q 018860 18 PVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLH 97 (349)
Q Consensus 18 ~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~ 97 (349)
.|..++|.| ||..|+.+ ++..+.+||...|..+.+++||++-|.||+++.||++++||+.|+.|-+|+.. .+-+.
T Consensus 14 ci~d~afkP---DGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKP---DGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGIL 88 (1081)
T ss_pred chheeEECC---CCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-cccee
Confidence 789999997 88887766 45678999999999999999999999999999999999999999999999853 44566
Q ss_pred EeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 018860 98 SFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS 177 (349)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 177 (349)
.+.|...|.|+.|+|-...++|++-.. .-+|...... ..-......+.+++|..+ +++++-|..+|+|-+=+- +
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~---V~K~kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk-~ 162 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS---VSKHKSSSRIICCSWTND-GQYLALGMFNGTISIRNK-N 162 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchhh-ccccChhhhh---HHhhhhheeEEEeeecCC-CcEEEEeccCceEEeecC-C
Confidence 678999999999999999999998654 4678754211 111223345778899865 555666777799988753 3
Q ss_pred CceEEeec----CCCCeeEEEEcCCC-----cEEEE-ecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEec
Q 018860 178 GEIVQTLE----TKSPVTSAEVSQDG-----RYITT-ADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGG 247 (349)
Q Consensus 178 ~~~~~~~~----~~~~v~~~~~~~~~-----~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
++..-.++ .++++.+++|+|.. ..++. -.+.++.++.+.....-+.-...-.+.++.+.+ ++.+++.||
T Consensus 163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~-NGEy~LiGG 241 (1081)
T KOG1538|consen 163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFT-NGEYILLGG 241 (1081)
T ss_pred CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheecc-CCcEEEEcc
Confidence 43332332 35689999999863 23433 347888888876543333333334455666666 489999999
Q ss_pred CCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 248 EDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 248 ~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
.|+.+.+|. +.|-.+.++.....+||+++..|++++.+.|+.||+|-.|++
T Consensus 242 sdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 242 SDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 999999996 456677777777889999999999999999999999999986
No 134
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=4.4e-22 Score=182.35 Aligned_cols=278 Identities=21% Similarity=0.274 Sum_probs=214.7
Q ss_pred CCceeeEEEeecCCCcc-EEEEEecCCCeEEEeCCCCCeEEEee-cccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC
Q 018860 16 SRPVVDLFYSPITPDGF-FLISASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDTNALRAASASADFSAKVWDALTG 93 (349)
Q Consensus 16 ~~~v~~~~fs~~~~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~ 93 (349)
.+.|+.+.|.. ||. .|++|+..|.+.+||++..+.+..++ .|.+.|....|-+....++|++.|...++|=.+++
T Consensus 244 ~g~VtslSFrt---DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WGRVTSLSFRT---DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred ccceeEEEecc---CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 48999999986 665 56777777999999998877776665 68777777777777777777777777777733211
Q ss_pred CE-----------------E------------------------------------------------------------
Q 018860 94 DV-----------------L------------------------------------------------------------ 96 (349)
Q Consensus 94 ~~-----------------~------------------------------------------------------------ 96 (349)
+- +
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 00 0
Q ss_pred ------------------------------------EEeccC------CeEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 018860 97 ------------------------------------HSFEHK------HIVRACSFSEDTHLLLTGGMEKILRIFDLNRP 134 (349)
Q Consensus 97 ------------------------------------~~~~~~------~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~ 134 (349)
+.+.+. ..+++++.++.|++.+.|...|.|-+|++..+
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 001112 34678888889999998999999999998754
Q ss_pred CCCCce--eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEE-EEecCCeEE
Q 018860 135 DAPPRE--VDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYI-TTADGSTVK 211 (349)
Q Consensus 135 ~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~ 211 (349)
-..... ...|.++|+.++...-+ +++++++.+|-+++||.........+.....+..+..+....++ ++.+|-.|+
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred eeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence 322221 25788899999865444 45556666799999999998888888877777777777665554 456788999
Q ss_pred EEecCCceeeEEEc-CCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecC
Q 018860 212 FWDANHFGLVKSYN-MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSE 290 (349)
Q Consensus 212 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~ 290 (349)
++|..+.+.++.+. +...+..++|+|+ ++.+++++.|++||+||+.++..+..+. -..++.++.|||+|++||+...
T Consensus 560 vvD~~t~kvvR~f~gh~nritd~~FS~D-grWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHGNRITDMTFSPD-GRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred EEEchhhhhhHHhhccccceeeeEeCCC-CcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEe
Confidence 99999998888876 6778999999984 9999999999999999999999987654 4578999999999999999999
Q ss_pred CCC-EEEecC
Q 018860 291 DGT-IRIWQT 299 (349)
Q Consensus 291 Dg~-v~vW~~ 299 (349)
|+. |++|.-
T Consensus 638 d~~gIylWsN 647 (910)
T KOG1539|consen 638 DQNGIYLWSN 647 (910)
T ss_pred cCceEEEEEc
Confidence 954 999964
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.5e-22 Score=184.09 Aligned_cols=239 Identities=16% Similarity=0.269 Sum_probs=192.6
Q ss_pred ecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC-CEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 018860 58 EGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG-DVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPD 135 (349)
Q Consensus 58 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~ 135 (349)
.+|+..-+.++++++|..|.||+.||.||+|+.... +.-.++. +...|.+++. .+++|++|+.+++|.+|.+....
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 468888899999999999999999999999997665 4444555 7777877766 45589999999999999987654
Q ss_pred CCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec-CCCCeeEEEEcCCCcEEEEec-CCeEEEE
Q 018860 136 APPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE-TKSPVTSAEVSQDGRYITTAD-GSTVKFW 213 (349)
Q Consensus 136 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-d~~i~iw 213 (349)
. ...+.+..-+++.+++..++ ..++.|++|-.|++-++........+. +..+|.++.++|++.+|+.+. ||.|++|
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred c-cceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 3 22444555678888887654 556677788999999998877666665 567999999999999998765 9999999
Q ss_pred ecCCceeeEEEcC---------CCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEec--CCCcceeEEEEccCC
Q 018860 214 DANHFGLVKSYNM---------PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNK--GHHGPVHCVRFSPGG 282 (349)
Q Consensus 214 d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~--~h~~~i~~l~~sp~~ 282 (349)
|+..+.+.+.+.. ......++|+|+ +..|+..+.|+.|.+|+....+....++ .+...+..+.|+|+|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk-~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK-GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCC-CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 9998776655422 223457889996 6778888899999999999998887765 344559999999999
Q ss_pred CeEEEecCCCCEEEecCCC
Q 018860 283 ESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 283 ~~l~sgs~Dg~v~vW~~~~ 301 (349)
+|||+++.||.|-|||++.
T Consensus 245 ~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cEEeeeccCCcEEEEeccc
Confidence 9999999999999999983
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.1e-24 Score=193.56 Aligned_cols=253 Identities=20% Similarity=0.358 Sum_probs=209.7
Q ss_pred ccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEE-eccCCeEEEEE
Q 018860 31 GFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHS-FEHKHIVRACS 109 (349)
Q Consensus 31 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~-~~~~~~v~~~~ 109 (349)
+.++..+..+-.+++|+.. .+-.|+..|.++..-..++.+++|+.|..+-+|.+..-..+.. ..|..+|.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 3345556666667788754 4456888898888877888999999999999999887777666 45999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC-C
Q 018860 110 FSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-S 188 (349)
Q Consensus 110 ~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~ 188 (349)
|+++..+|++|+.+|+|++||+...+ ..+.+-+|...+.++.|+|-+. ++++++.|.-+++||++..-|.+.+..+ .
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAK-IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhh-hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcc
Confidence 99999999999999999999997533 3567778888999999887654 5578888899999999977777777754 4
Q ss_pred CeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEc-CCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEe
Q 018860 189 PVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYN-MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACN 266 (349)
Q Consensus 189 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~ 266 (349)
.+..+.|+|+|++++.+ +|.++++||+..++....|. +.+.+..+.|+|. .-.++.|+.|+++++||+++-+.+...
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeecc
Confidence 57888999999998765 57999999999999998887 5677778888874 566788999999999999988887777
Q ss_pred cCCCcceeEEEEccCCCeEEEecCCC
Q 018860 267 KGHHGPVHCVRFSPGGESYASGSEDG 292 (349)
Q Consensus 267 ~~h~~~i~~l~~sp~~~~l~sgs~Dg 292 (349)
+.....|.+++|+|++..+++|-.+.
T Consensus 235 ~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCccCCceeeeecCCceeeecCchhh
Confidence 77788999999999999988886554
No 137
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.2e-23 Score=189.37 Aligned_cols=233 Identities=19% Similarity=0.284 Sum_probs=184.4
Q ss_pred EEEEC-CCCCeeEEeeCCCeEEEEECCC---CCEEEEe-ccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCc
Q 018860 66 SCCLD-TNALRAASASADFSAKVWDALT---GDVLHSF-EHKHIVRACSFSED-THLLLTGGMEKILRIFDLNRPDAPPR 139 (349)
Q Consensus 66 ~~~~~-~~~~~l~s~s~D~~i~vWd~~~---~~~~~~~-~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~~~~ 139 (349)
.|.|. ...++||||+..|.|-+||+.. .+.+..| +|...++++.|++. -++|+|||+|++|++||++..+...
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~- 170 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS- 170 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc-
Confidence 34554 3567899999999999999976 2333344 49999999999984 5789999999999999998655433
Q ss_pred eeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC-ceEEee-cCCCCeeEEEEcCCCcEEEEe-cCCeEEEEecC
Q 018860 140 EVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSG-EIVQTL-ETKSPVTSAEVSQDGRYITTA-DGSTVKFWDAN 216 (349)
Q Consensus 140 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~ 216 (349)
.+......|+.+.|+|..+..|+++.+.|.+++||+|.. ++...+ .|.++|.++.|+|++.+|+++ .|++|+|||..
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 233456689999999999999999999999999999864 344444 467899999999999998765 59999999987
Q ss_pred Cce--eeEEEcCCCceEEeeecCCCCCEEEEec--CCCeEEEEeCCCCc-EEEEecCCCcceeEEEEcc-CCCeEEEecC
Q 018860 217 HFG--LVKSYNMPCTIESASLEPKYGNKFVAGG--EDMWVRFFDFHTGN-EIACNKGHHGPVHCVRFSP-GGESYASGSE 290 (349)
Q Consensus 217 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~v~d~~~~~-~~~~~~~h~~~i~~l~~sp-~~~~l~sgs~ 290 (349)
..+ ++.+++.-..+..+.|-|....+|++++ .|..|+|||++-.- +..++..|...++.++|-. +...|.++|.
T Consensus 251 ~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 251 DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK 330 (839)
T ss_pred CCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence 543 4455555566788999998888888876 58899999997544 3567888999999999954 3456889999
Q ss_pred CCCEEEecC
Q 018860 291 DGTIRIWQT 299 (349)
Q Consensus 291 Dg~v~vW~~ 299 (349)
||+|..-.+
T Consensus 331 D~tv~qh~~ 339 (839)
T KOG0269|consen 331 DGTVLQHLF 339 (839)
T ss_pred ccHHHHhhh
Confidence 999876554
No 138
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=198.91 Aligned_cols=242 Identities=19% Similarity=0.278 Sum_probs=196.7
Q ss_pred CCeEEEEECCCCCe----eEEeeCCCeEEEEECCCC---CE---EEEe-ccCCeEEEEEEcCC-CCEEEEEeCCCeEEEE
Q 018860 62 GAVWSCCLDTNALR----AASASADFSAKVWDALTG---DV---LHSF-EHKHIVRACSFSED-THLLLTGGMEKILRIF 129 (349)
Q Consensus 62 ~~v~~~~~~~~~~~----l~s~s~D~~i~vWd~~~~---~~---~~~~-~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lw 129 (349)
..-..++|.+.+.. ||.|..||.|-+||...- .. +.++ .|.+.|+.+.|++. +++||+|+.||.|.+|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34577888765554 899999999999997652 21 2222 48899999999996 5599999999999999
Q ss_pred ECCCCCCCCce-eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCC---eeEEEEcCCC--cEEE
Q 018860 130 DLNRPDAPPRE-VDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSP---VTSAEVSQDG--RYIT 203 (349)
Q Consensus 130 d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~---v~~~~~~~~~--~~l~ 203 (349)
|+++.+.+... ....++.|.+++|......+|++++.+|.+-|||+|..+.+-.+..... +..+.|+|+. ++++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99887665443 2335678999999999999999999999999999998887766654433 7899999986 4566
Q ss_pred EecC---CeEEEEecCCc-eeeEEE-cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEE
Q 018860 204 TADG---STVKFWDANHF-GLVKSY-NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRF 278 (349)
Q Consensus 204 ~~~d---~~i~iwd~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~ 278 (349)
+++| -.|.+||+|.. .+.+.+ .+...+.++.|++.+.+++++++.|+.|.+|+.++++.+..+.....++..+.|
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w 304 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQW 304 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeee
Confidence 6653 36999998853 455555 445678899999998899999999999999999999999999888899999999
Q ss_pred ccCCC-eEEEecCCCCEEEecCCCCC
Q 018860 279 SPGGE-SYASGSEDGTIRIWQTGPVT 303 (349)
Q Consensus 279 sp~~~-~l~sgs~Dg~v~vW~~~~~~ 303 (349)
+|... .++..+.||.|-|+.+....
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCcchhhhheeccceeeeeeecCC
Confidence 99877 67889999999999886543
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.2e-21 Score=173.10 Aligned_cols=275 Identities=19% Similarity=0.247 Sum_probs=213.2
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCC-eEEEeeccc-CCeEEEEECCCCCeeEEeeCCCeEEEEECCCCC
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGD-WIGTFEGHK-GAVWSCCLDTNALRAASASADFSAKVWDALTGD 94 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~ 94 (349)
.+|++++||. .++.||.+-.||.|.||+...+- +...+.||. ..|.+++|. ++.+|+|.+.+|.|.-||+.+++
T Consensus 26 s~I~slA~s~---kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 26 SEIVSLAYSH---KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred cceEEEEEec---cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 5789999997 55579999999999999987754 456777775 669999999 55679999999999999999999
Q ss_pred EEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC-CceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 018860 95 VLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAP-PREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRL 172 (349)
Q Consensus 95 ~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~v 172 (349)
.+..+. ..+.|.+++.+|.+..++.|+.||.+..++....... .+.+...++.+.++.|.+.+..+ ++|+.||.|++
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i-~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI-AGGSIDGVIRI 180 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEE-EecccCceEEE
Confidence 888876 5578999999999999999999997777776543322 22344556789999998766544 46667799999
Q ss_pred EECCCCceEEeecC---------CCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcC-CCceEEeeecCCCCCE
Q 018860 173 WDVRSGEIVQTLET---------KSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNM-PCTIESASLEPKYGNK 242 (349)
Q Consensus 173 wd~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 242 (349)
||..++..++.... ..-|.++.+..++..+++-.-|+|++||...+.+++.+.. ...+.+++..+. +++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~-~d~ 259 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN-EDR 259 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC-CCe
Confidence 99999877663211 1236677777776665555579999999999888877654 345777777654 688
Q ss_pred EEEecCCCeEEEEeCCCCcE--E--EEecCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 243 FVAGGEDMWVRFFDFHTGNE--I--ACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 243 ~~~~~~d~~i~v~d~~~~~~--~--~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
++++|-|+.|..|...+.+. + .....|...|.+++..++ .|++|+.|.++.+=..
T Consensus 260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 99999999988888766533 1 223578889999999876 7899999999888654
No 140
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=167.65 Aligned_cols=280 Identities=16% Similarity=0.214 Sum_probs=207.5
Q ss_pred eeEEEeecC--CCc--cEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECC--CCCeeEEeeCCCeEEEEECCCC
Q 018860 20 VDLFYSPIT--PDG--FFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDT--NALRAASASADFSAKVWDALTG 93 (349)
Q Consensus 20 ~~~~fs~~~--~~~--~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vWd~~~~ 93 (349)
.++.+++.. .+| ..+|++-+.|++++||..++..+..|++|...+..++|.. .+..+.||+.||+||+||++..
T Consensus 25 ~~Lk~~~q~~~~~~~e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~ 104 (376)
T KOG1188|consen 25 FCLKYDIQEQVKDGFETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ 104 (376)
T ss_pred ceeeccchhhhccCcceeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc
Confidence 456664321 122 3588888999999999999999999999999999999966 5667899999999999999887
Q ss_pred CEEEEec---cC-CeEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCCCCCc-eeccCCCCeEEEEEecCCCeEEEEe
Q 018860 94 DVLHSFE---HK-HIVRACSFSEDTHLLLTGG----MEKILRIFDLNRPDAPPR-EVDRSPGSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 94 ~~~~~~~---~~-~~v~~~~~s~~~~~l~s~~----~d~~i~lwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~ 164 (349)
.....+. ++ .+..+++..-.++.+++|. .+-.+.+||++..+...+ ....|...|+.+.|+|++..+|++|
T Consensus 105 ~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 105 AESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred hhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 6554443 33 4667777776777888775 467799999987766433 3467889999999999999999999
Q ss_pred eCCCeEEEEECCCCc----eEEeecCCCCeeEEEEcCCC--cEEEEecCCeEEEEecCCceeeEEEcCCC----------
Q 018860 165 TDMGGVRLWDVRSGE----IVQTLETKSPVTSAEVSQDG--RYITTADGSTVKFWDANHFGLVKSYNMPC---------- 228 (349)
Q Consensus 165 ~~dg~v~vwd~~~~~----~~~~~~~~~~v~~~~~~~~~--~~l~~~~d~~i~iwd~~~~~~~~~~~~~~---------- 228 (349)
+-||-|.++|++... +++.+.+.+.|.++.|..++ +...-+...+..+|+++...+...+..+.
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~ 264 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKED 264 (376)
T ss_pred cccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhh
Confidence 999999999997542 34556677778999999887 55555678899999998776554443321
Q ss_pred --ceEEeeecCCCCCEEEEecC-CCeEEEEeCC---CC---cEEEEecC-CCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 229 --TIESASLEPKYGNKFVAGGE-DMWVRFFDFH---TG---NEIACNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 229 --~~~~~~~~~~~~~~~~~~~~-d~~i~v~d~~---~~---~~~~~~~~-h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
...--...|.+...++.++. -+..+++-+. ++ +.+..+.+ |..-|.++.|...+.++.||++||.|.+|.
T Consensus 265 ~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 265 NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred hhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 00111223444556665554 5666666443 22 23444555 677789999988889999999999999998
Q ss_pred C
Q 018860 299 T 299 (349)
Q Consensus 299 ~ 299 (349)
.
T Consensus 345 ~ 345 (376)
T KOG1188|consen 345 V 345 (376)
T ss_pred c
Confidence 5
No 141
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1e-21 Score=166.07 Aligned_cols=284 Identities=18% Similarity=0.200 Sum_probs=219.3
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCC------CCCeEEEee-cccCCeEEEEECCCCCeeEEeeCCCe
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGE------TGDWIGTFE-GHKGAVWSCCLDTNALRAASASADFS 84 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~------~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~ 84 (349)
++||.+.|+++.||. ++++|+||+.|...++|..+ +.+++.... .|...|.|++|+.....+.+|+.+++
T Consensus 52 ~~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 52 VREHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 469999999999997 79999999999999999854 234454443 36688999999999999999999999
Q ss_pred EEEEECCCCCEEEEeccCC---eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc--eeccCCCCeEEEEEecCCCe
Q 018860 85 AKVWDALTGDVLHSFEHKH---IVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR--EVDRSPGSVRTVAWLHSDQT 159 (349)
Q Consensus 85 i~vWd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~ 159 (349)
|-+-|+++.+.+..+.|.+ .|+.+..+|..+.+++.+.++.+.+||.+....+.. .+...+....++.|.|-...
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 9999999999999998776 899999999999999999999999999875432222 23345567788999999999
Q ss_pred EEEEeeCCCeEEEEECCCCce-EE------eecC-CCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCcee-eEEEcCC--
Q 018860 160 ILSTCTDMGGVRLWDVRSGEI-VQ------TLET-KSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGL-VKSYNMP-- 227 (349)
Q Consensus 160 ~l~~~~~dg~v~vwd~~~~~~-~~------~~~~-~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~-- 227 (349)
+|++.+..+.+-+||+|.... +. .++. ......+.|+|+|..+.+- ....-.+||+...++ +-++.++
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 999999999999999986431 11 1121 1234678899998665443 344556788877543 3333322
Q ss_pred -----CceEEeeecCCCCCEEEEecCCCeEEEEeCCC----------C-------------cEEEEecCCCcceeEEEEc
Q 018860 228 -----CTIESASLEPKYGNKFVAGGEDMWVRFFDFHT----------G-------------NEIACNKGHHGPVHCVRFS 279 (349)
Q Consensus 228 -----~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~-------------~~~~~~~~h~~~i~~l~~s 279 (349)
+.+.+++|.. +..+++|+++-.|++|.+.. | +.+..++||-.-+..+.|+
T Consensus 289 GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred cceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 2344556653 45689999999999998742 1 2345678999999999999
Q ss_pred cCCCeEEEecCCCCEEEecCC
Q 018860 280 PGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 280 p~~~~l~sgs~Dg~v~vW~~~ 300 (349)
|-..+|+|.+-.+.+|||..-
T Consensus 367 ~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 367 QHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CCcceEeccchhhheeccccc
Confidence 999999999999999999753
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.3e-20 Score=164.03 Aligned_cols=270 Identities=18% Similarity=0.229 Sum_probs=205.2
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEE
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVL 96 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~ 96 (349)
+.|.|++|.+ +|+ +++|.++|.|.||+..+....+....|.+.|.+++.-.+|. |+||+.|+.|-.|| ..-+.+
T Consensus 247 k~Vl~v~F~e---ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~ 320 (626)
T KOG2106|consen 247 KFVLCVTFLE---NGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKL 320 (626)
T ss_pred eEEEEEEEcC---CCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-cccccc
Confidence 7899999997 554 78999999999999887777777779999999999999996 67799999999999 333333
Q ss_pred EEec---cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 018860 97 HSFE---HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173 (349)
Q Consensus 97 ~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vw 173 (349)
+..+ ..++|+.++=...+ |+.|.....|--=.+... -.....+|..+...++-+|... .+++|+.|+.+++|
T Consensus 321 r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~--f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 321 RETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENG--FTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLW 395 (626)
T ss_pred ccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCC--ceEEEEecccceeeEEcCCChh-heeeccCcceEEEc
Confidence 3333 44678877654333 556655554433333221 1234567777888888666554 55588888999999
Q ss_pred ECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEE
Q 018860 174 DVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVR 253 (349)
Q Consensus 174 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 253 (349)
+ ..++.-+.....++.++.|+|.|.++++...|...+.|..+...+.......++..+.++|. +.+||.|+.|+.|+
T Consensus 396 ~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~-G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 396 N--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPD-GAFLAVGSHDNHIY 472 (626)
T ss_pred c--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCC-CCEEEEecCCCeEE
Confidence 9 44555555556788999999999444455688899999999877777766778889999985 99999999999999
Q ss_pred EEeCCCC-cEEEEe-cCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 254 FFDFHTG-NEIACN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 254 v~d~~~~-~~~~~~-~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
+|.+... ..+... +.|..+|+.+.||+|+++|.+-|-|-.|..|..+
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 9998643 333332 3445899999999999999999999999999543
No 143
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.3e-22 Score=161.45 Aligned_cols=209 Identities=23% Similarity=0.345 Sum_probs=165.4
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeE--EEeecccCCeEEEEECCC--CCeeEEeeCC
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDTN--ALRAASASAD 82 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~--~~~l~s~s~D 82 (349)
.-..+|+||++||.-++|... .-|.+|||+|.||.+.||..+++.+. ..+..|+..|.+++|.|. |..|+.++.|
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahP-k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHP-KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred eeeeEecCCCCCeeEEeeccc-ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 445678999999999999742 24889999999999999999888664 455679999999999885 5689999999
Q ss_pred CeEEEEECCCC--CEEE--EeccCCeEEEEEEcCC---C-----------CEEEEEeCCCeEEEEECCCCCCC-Cceecc
Q 018860 83 FSAKVWDALTG--DVLH--SFEHKHIVRACSFSED---T-----------HLLLTGGMEKILRIFDLNRPDAP-PREVDR 143 (349)
Q Consensus 83 ~~i~vWd~~~~--~~~~--~~~~~~~v~~~~~s~~---~-----------~~l~s~~~d~~i~lwd~~~~~~~-~~~~~~ 143 (349)
|.|.|.+.++. -... .+.|+-.|++++|.|. | +.|++||.|..|++|+.+..... .+.+.+
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~ 205 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG 205 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh
Confidence 99999987654 1222 2348888999999986 4 56999999999999999765332 234789
Q ss_pred CCCCeEEEEEecCC---CeEEEEeeCCCeEEEEECCCC--ceEEeec--CCCCeeEEEEcCCCcEEEEe-cCCeEEEEec
Q 018860 144 SPGSVRTVAWLHSD---QTILSTCTDMGGVRLWDVRSG--EIVQTLE--TKSPVTSAEVSQDGRYITTA-DGSTVKFWDA 215 (349)
Q Consensus 144 ~~~~i~~~~~~~~~---~~~l~~~~~dg~v~vwd~~~~--~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~ 215 (349)
|.+-++.++|.|.- ...+++|+.||+|.||-.+.. ....++. .+..+..+.|+..|.+|+.+ .|+.+.+|--
T Consensus 206 H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 206 HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 99999999999865 356889999999999987632 2222332 24568899999999998765 5889999965
Q ss_pred C
Q 018860 216 N 216 (349)
Q Consensus 216 ~ 216 (349)
+
T Consensus 286 ~ 286 (299)
T KOG1332|consen 286 N 286 (299)
T ss_pred C
Confidence 4
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=9.8e-24 Score=190.32 Aligned_cols=196 Identities=21% Similarity=0.364 Sum_probs=172.0
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEEC
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDA 90 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~ 90 (349)
.|.||..+|-++.|++ +..+|++|+.||+|++||++.+..++++-||...+.+|.|+|-+.+.++|+.|+.+++||.
T Consensus 65 S~~~hespIeSl~f~~---~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDT---SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred eeeccCCcceeeecCc---chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence 4679999999999997 6778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 018860 91 LTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG 169 (349)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 169 (349)
...-|.+.+. |...|..++|+|+|.++++|+.|.++++||+..+ .....+..|.+.+.++.|+ +...+++.|+.|++
T Consensus 142 Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~h-p~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 142 RKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFH-PLEVLLAPGSSDRT 219 (825)
T ss_pred hccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccccC-chhhhhccCCCCce
Confidence 9777888876 8888999999999999999999999999998653 3456778888999999965 56778889999999
Q ss_pred EEEEECCCCceEEeecC-CCCeeEEEEcCCCcEEEEecCCeEE
Q 018860 170 VRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTADGSTVK 211 (349)
Q Consensus 170 v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~d~~i~ 211 (349)
|++||+++.+.+..... ..++.+..|+|+++.+.++..-.++
T Consensus 220 v~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 220 VRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred eeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 99999998877766554 4578999999999988877644444
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=5.4e-22 Score=172.26 Aligned_cols=257 Identities=16% Similarity=0.249 Sum_probs=199.6
Q ss_pred eeeEEEeecCCCccEEEEEe--cCCCeEEEeC--CCCCe--EEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCC
Q 018860 19 VVDLFYSPITPDGFFLISAS--KDSSPMLRNG--ETGDW--IGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALT 92 (349)
Q Consensus 19 v~~~~fs~~~~~~~~l~s~s--~d~~i~iw~~--~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~ 92 (349)
+..+.|+. ..+|++++ .|..+++|-- .+++. ++...|. ...||+......++++||..++|+|||+..
T Consensus 37 ~~s~~w~~----~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 37 DFSFNWQR----RNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA 110 (673)
T ss_pred ceeeeccc----cceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH
Confidence 56666663 22355554 4557888853 23333 3333343 456677666778999999999999999985
Q ss_pred CCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEE
Q 018860 93 GDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVR 171 (349)
Q Consensus 93 ~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~ 171 (349)
..+.+.++ |...|+++.+.-...+||+++..|.|.+-.+.+.......-.+....++-+.|++....+|.+++++|.|.
T Consensus 111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 55555554 88999999999999999999999999999987655433333333445667899998899999999999999
Q ss_pred EEECCCCceEEeec--CCCCeeEEEEcCCCcEE--EEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEec
Q 018860 172 LWDVRSGEIVQTLE--TKSPVTSAEVSQDGRYI--TTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGG 247 (349)
Q Consensus 172 vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
+||.....+...+. |..|...++|+|....| +.+.|..|.+||++..+....+....++..++|.+ ++.+|++|.
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG~ 269 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAGN 269 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEeec
Confidence 99998777765553 45688999999987654 34679999999999988888888888888999997 489999999
Q ss_pred CCCeEEEEeCCCCc-EEEEecCCCcceeEEEEccCC
Q 018860 248 EDMWVRFFDFHTGN-EIACNKGHHGPVHCVRFSPGG 282 (349)
Q Consensus 248 ~d~~i~v~d~~~~~-~~~~~~~h~~~i~~l~~sp~~ 282 (349)
..|.|..||++..+ ++..+..|...|++++|-|.-
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999998654 577888999999999998764
No 146
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=7.7e-22 Score=166.85 Aligned_cols=223 Identities=22% Similarity=0.328 Sum_probs=169.6
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC-------CeEEEeecccCCeEEEEECCCC-CeeEEeeCCC
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDTNA-LRAASASADF 83 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~ 83 (349)
+.||+++|.+++|.|. +.+.|||||.|.++.||.+..+ +.+..|.||+..|-.++|+|.. ..|+|+|.|.
T Consensus 77 v~GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred ccCccccccccccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 4699999999999994 5668999999999999985432 4578899999999999999864 4789999999
Q ss_pred eEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCC-eEEEEEecCCCeEEE
Q 018860 84 SAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGS-VRTVAWLHSDQTILS 162 (349)
Q Consensus 84 ~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~ 162 (349)
+|.+||+.+|+.+-++.|+..|.++.|+.+|.+|++.+.|+.||+||..+..... ....|.+. -..+.|..++. ++.
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~-e~~~heG~k~~Raifl~~g~-i~t 232 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS-EGVAHEGAKPARAIFLASGK-IFT 232 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee-ecccccCCCcceeEEeccCc-eee
Confidence 9999999999999999999999999999999999999999999999987654322 22344442 23344665444 666
Q ss_pred Eee---CCCeEEEEECCCC---ceEEeecCCCCeeEEEEcCCCcEEE-Ee-cCCeEEEEecCCcee----eEEEcCCCce
Q 018860 163 TCT---DMGGVRLWDVRSG---EIVQTLETKSPVTSAEVSQDGRYIT-TA-DGSTVKFWDANHFGL----VKSYNMPCTI 230 (349)
Q Consensus 163 ~~~---~dg~v~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~----~~~~~~~~~~ 230 (349)
||- .+.++-+||..+- -....+...+.|.--.+.+|...+. ++ .|+.||.|.+....+ +..|.....-
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQ 312 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQ 312 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcc
Confidence 653 4579999998653 3345667777787777888887653 33 589999999876542 2333333333
Q ss_pred EEeeecCC
Q 018860 231 ESASLEPK 238 (349)
Q Consensus 231 ~~~~~~~~ 238 (349)
..+.+.|+
T Consensus 313 RG~g~mPK 320 (472)
T KOG0303|consen 313 RGMGFMPK 320 (472)
T ss_pred cccccccc
Confidence 34555554
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=2.8e-22 Score=168.53 Aligned_cols=164 Identities=24% Similarity=0.417 Sum_probs=141.7
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeE---EEeecccCCeEEEEECCC-CCeeEEeeCCCeEE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWI---GTFEGHKGAVWSCCLDTN-ALRAASASADFSAK 86 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~---~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~ 86 (349)
.+.||++.-+.++|||. ..| .|+||..-+.|++|...++.+. +.|-+|+..|..++|+|. ...|+|||.|++||
T Consensus 206 t~~ghk~EGy~LdWSp~-~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIr 283 (440)
T KOG0302|consen 206 TFNGHKGEGYGLDWSPI-KTG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIR 283 (440)
T ss_pred EecccCccceeeecccc-ccc-ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEE
Confidence 45799999999999994 344 4778888889999998888874 567789999999999985 45789999999999
Q ss_pred EEECCCC---CEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--CCCceeccCCCCeEEEEEecCCCeEE
Q 018860 87 VWDALTG---DVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPD--APPREVDRSPGSVRTVAWLHSDQTIL 161 (349)
Q Consensus 87 vWd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l 161 (349)
|||++.+ -++.+-.|..-|+.+.|+..-.+|++|+.||++++||++..+ .+...+..|+.+|+++.|+|.....|
T Consensus 284 IWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 284 IWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred EEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceE
Confidence 9999988 456666788899999999988899999999999999998543 44567888999999999999999888
Q ss_pred EEeeCCCeEEEEECC
Q 018860 162 STCTDMGGVRLWDVR 176 (349)
Q Consensus 162 ~~~~~dg~v~vwd~~ 176 (349)
++++.|.+|.+||+.
T Consensus 364 aasg~D~QitiWDls 378 (440)
T KOG0302|consen 364 AASGEDNQITIWDLS 378 (440)
T ss_pred EeccCCCcEEEEEee
Confidence 888889999999985
No 148
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2e-22 Score=177.49 Aligned_cols=258 Identities=21% Similarity=0.286 Sum_probs=179.0
Q ss_pred ceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC--------CCeEEEeecccCCeEEEEECCCCCeeEEee
Q 018860 9 PLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET--------GDWIGTFEGHKGAVWSCCLDTNALRAASAS 80 (349)
Q Consensus 9 ~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 80 (349)
...++-|.+.|+++.|.|..| .|++|+-|+++++|+++. .+.+.+|++|.++|.|+++..++..+.|||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred eeeeecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 346778999999999998666 599999999999998721 246899999999999999999999999999
Q ss_pred CCCeEEEEECCCCC----------EE-EEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeE
Q 018860 81 ADFSAKVWDALTGD----------VL-HSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVR 149 (349)
Q Consensus 81 ~D~~i~vWd~~~~~----------~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~ 149 (349)
-||+||.|++.... .. ....|...|..+++|+....|++++.||++|+|................+...
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPL 443 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcc
Confidence 99999999654221 11 22358899999999999999999999999999997543321111111122334
Q ss_pred EEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCc
Q 018860 150 TVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCT 229 (349)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~ 229 (349)
++.+......+.++. ...+.+++...+... .+.+.+. +.....+.+ +.
T Consensus 444 svd~~ss~~a~~~~s---~~~~~~~~~~~ev~s---------~~~~~~s------~~~~~~~~~--------------~~ 491 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLAS---FRFGYTSIDDMEVVS---------DLLIFES------SASPGPRRY--------------PQ 491 (577)
T ss_pred eEeeccchhHhhhhh---cccccccchhhhhhh---------heeeccc------cCCCccccc--------------Cc
Confidence 455443332222222 223333322211111 1111110 000000000 11
Q ss_pred eEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 230 IESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
+..+..+|. ....+++..|+.|+++|..+++.+.....|...++++++-|+|.+|++|+.||.+++|+....
T Consensus 492 in~vVs~~~-~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 492 INKVVSHPT-ADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cceEEecCC-CCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 223333443 567888999999999999999999999999999999999999999999999999999987543
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=1.3e-21 Score=174.52 Aligned_cols=176 Identities=18% Similarity=0.281 Sum_probs=122.2
Q ss_pred CeEEEEECCC-CceE----EeecCCCCeeEEEEcCCC--cEEEEecCCeEEEEecCCceeeE-------EEc-CCCceEE
Q 018860 168 GGVRLWDVRS-GEIV----QTLETKSPVTSAEVSQDG--RYITTADGSTVKFWDANHFGLVK-------SYN-MPCTIES 232 (349)
Q Consensus 168 g~v~vwd~~~-~~~~----~~~~~~~~v~~~~~~~~~--~~l~~~~d~~i~iwd~~~~~~~~-------~~~-~~~~~~~ 232 (349)
|.|-|++++. |+.- -.+..+..|+.+.|.|-. ++.++++|+.|++|.+....... .+. +...++.
T Consensus 603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~s 682 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITS 682 (1012)
T ss_pred ceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEE
Confidence 5677777754 3321 222334568888898843 56677889999999986543322 222 2345788
Q ss_pred eeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCCCCCcceeeec
Q 018860 233 ASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTNDDTETLTA 312 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~~~~~~~~~~ 312 (349)
+.|+|-..+.|++++.|.+|++||+.+++....+.+|++.|..++|||+|+.+|+.+.||+|++|+.........|.-..
T Consensus 683 lRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp 762 (1012)
T KOG1445|consen 683 LRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP 762 (1012)
T ss_pred EEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC
Confidence 99999888899999999999999999999999999999999999999999999999999999999876443222222222
Q ss_pred cC-eeeeeEeChhhhhccccceeecccccchh
Q 018860 313 NG-TIGKVKVTADEVSRKIEGFHIADEGKMKE 343 (349)
Q Consensus 313 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (349)
.| ....+....+...-.+.|+.-.+|-++++
T Consensus 763 vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~ 794 (1012)
T KOG1445|consen 763 VGTRGARILWACDGRIVIVVGFDKSSERQVQM 794 (1012)
T ss_pred ccCcceeEEEEecCcEEEEecccccchhhhhh
Confidence 11 11123334444444446666555555544
No 150
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=168.18 Aligned_cols=247 Identities=15% Similarity=0.191 Sum_probs=187.1
Q ss_pred CCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCE
Q 018860 16 SRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDV 95 (349)
Q Consensus 16 ~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~ 95 (349)
.++|.|++-+| +|.||+.|+-.+.+.+|...+|.++..+.+|-.+|+|+.|+.|+..|+|||.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n---~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~---- 153 (476)
T KOG0646|consen 81 PGPVHALASSN---LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT---- 153 (476)
T ss_pred ccceeeeecCC---CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE----
Confidence 45688887665 89999988899999999999999999999999999999999999999999999999999863
Q ss_pred EEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecC-CCeEEEEeeCCCeEEEEE
Q 018860 96 LHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHS-DQTILSTCTDMGGVRLWD 174 (349)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd 174 (349)
.++++..|+. -.+...+..|.-+|+.+...+. ....+.+++.|.++|+||
T Consensus 154 --------------------~lv~a~~~~~---------~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 154 --------------------DLVSADNDHS---------VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD 204 (476)
T ss_pred --------------------eecccccCCC---------ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence 1333333331 1234455667777887765543 234566888889999999
Q ss_pred CCCCceEEeecCCCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCce----------------eeEEE-cCC--CceEEee
Q 018860 175 VRSGEIVQTLETKSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFG----------------LVKSY-NMP--CTIESAS 234 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~----------------~~~~~-~~~--~~~~~~~ 234 (349)
+..|..+.++.....++++.+.|-++.+.++ .+|.|.+.++.+.. .++.+ .+. ..+.+++
T Consensus 205 lS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 205 LSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred eccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE
Confidence 9999999999888899999999988877654 58988877764322 11111 111 2567777
Q ss_pred ecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEec-CCCCEEEecC
Q 018860 235 LEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-EDGTIRIWQT 299 (349)
Q Consensus 235 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs-~Dg~v~vW~~ 299 (349)
++. ++..|++|+.||.+++||..+.++++++....++|+.+.+.|-.+-...+. ..-.+-.|+.
T Consensus 285 is~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 285 IST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred Eec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 775 599999999999999999999888887766678999999977544333322 2223444544
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=1.7e-20 Score=155.09 Aligned_cols=266 Identities=22% Similarity=0.301 Sum_probs=192.6
Q ss_pred eEEEeecCCCccEEEEEecCCCeEEEeCCC-----C-------CeEEEeeccc-CCeEEEEE-------CCCCCeeEEee
Q 018860 21 DLFYSPITPDGFFLISASKDSSPMLRNGET-----G-------DWIGTFEGHK-GAVWSCCL-------DTNALRAASAS 80 (349)
Q Consensus 21 ~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~-----~-------~~~~~~~~h~-~~v~~~~~-------~~~~~~l~s~s 80 (349)
.+.||| ||..|++-+.|..+++|+... + +...+++-.. .-|...+| .|+..++++.+
T Consensus 54 gckWSP---DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 54 GCKWSP---DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred cceeCC---CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 445665 999999999999999997421 1 1122232222 33666666 46777899999
Q ss_pred CCCeEEEEECCCCCEEEEec---cCC---eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc--ee-----ccCCCC
Q 018860 81 ADFSAKVWDALTGDVLHSFE---HKH---IVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR--EV-----DRSPGS 147 (349)
Q Consensus 81 ~D~~i~vWd~~~~~~~~~~~---~~~---~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~--~~-----~~~~~~ 147 (349)
.|.-|++||.-+|+....+. |.. ...+++|+|||.+|++ |..+.||+||+..+..... .. .+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 99999999999998877664 433 3568999999999986 5678899999965443211 11 122455
Q ss_pred eEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec-CCCCeeEEEEcCCCcEEEEec--CCeEEEEecCCceee-EE
Q 018860 148 VRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE-TKSPVTSAEVSQDGRYITTAD--GSTVKFWDANHFGLV-KS 223 (349)
Q Consensus 148 i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--d~~i~iwd~~~~~~~-~~ 223 (349)
+.+++|+|.+...++.++--..+-|+.-..+.++..+. +...|+.++|.++|..|.++. +..|..||+|..+.. -.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 77889999888788777765667777666667766664 467899999999998776543 789999999875432 11
Q ss_pred Ec-C---CCceEEeeecCCCCCEEEEecCCCeEEEEeCCC-CcEEEEecCCCcceeEEEEccCCCeEEEecCC
Q 018860 224 YN-M---PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHT-GNEIACNKGHHGPVHCVRFSPGGESYASGSED 291 (349)
Q Consensus 224 ~~-~---~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~D 291 (349)
+. + ..+...+.+.| .++.|++|+.||.|++||+.. +..+..+..|+..++.++++|.-+++|++|-.
T Consensus 290 L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 11 1 11222334455 478999999999999999988 77777778899999999999998888877743
No 152
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=5.6e-21 Score=160.78 Aligned_cols=201 Identities=19% Similarity=0.303 Sum_probs=160.5
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC----------------CCeEEEeecccCCeEEEEECCCC-Cee
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET----------------GDWIGTFEGHKGAVWSCCLDTNA-LRA 76 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~----------------~~~~~~~~~h~~~v~~~~~~~~~-~~l 76 (349)
+|.+.++-+.-++.. +..++++=|..|.+.||+... ...+.++.+|...=+.++|+|-. ..|
T Consensus 149 ~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred ccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 688888888777643 566788888889999998531 34678899999888999999832 248
Q ss_pred EEeeCCCeEEEEECCCCCE----EEEeccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-CCCCceeccCCCCeEE
Q 018860 77 ASASADFSAKVWDALTGDV----LHSFEHKHIVRACSFSED-THLLLTGGMEKILRIFDLNRP-DAPPREVDRSPGSVRT 150 (349)
Q Consensus 77 ~s~s~D~~i~vWd~~~~~~----~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~-~~~~~~~~~~~~~i~~ 150 (349)
+||.--+.|++|...+|.= .-+..|...|..++|||. ...|+|||.|++|++||++.. +........|.+.|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 8988889999999888742 223348899999999995 568899999999999999865 3333455788899999
Q ss_pred EEEecCCCeEEEEeeCCCeEEEEECCC---CceEEeec-CCCCeeEEEEcCCC--cEEEEecCCeEEEEecC
Q 018860 151 VAWLHSDQTILSTCTDMGGVRLWDVRS---GEIVQTLE-TKSPVTSAEVSQDG--RYITTADGSTVKFWDAN 216 (349)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~v~vwd~~~---~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~d~~i~iwd~~ 216 (349)
+.|+..-. +|++|+++|+++|||+|+ ++++.+++ |+.+|+++.|+|.. .+++++.|.+|.+||+.
T Consensus 308 ISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 308 ISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred EEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 99986655 899999999999999986 56677776 46799999999854 44556779999999985
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=4.5e-21 Score=166.56 Aligned_cols=265 Identities=15% Similarity=0.215 Sum_probs=197.0
Q ss_pred EEecCCCeEEEeCCCCCeEEEeeccc--CCeEEEEECCCC-CeeEEeeCCCeEEEEECCCC--CE-EEEeccCCeEEEEE
Q 018860 36 SASKDSSPMLRNGETGDWIGTFEGHK--GAVWSCCLDTNA-LRAASASADFSAKVWDALTG--DV-LHSFEHKHIVRACS 109 (349)
Q Consensus 36 s~s~d~~i~iw~~~~~~~~~~~~~h~--~~v~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~--~~-~~~~~~~~~v~~~~ 109 (349)
.+|...++++||...-+..-.+-.|+ ..+.+++|.... ...++.+.|+.+++|.-... +. +........-.|++
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVA 86 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHh
Confidence 34444678999977655444444443 238889998776 34455668999999975432 11 11111222334555
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC--
Q 018860 110 FSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-- 187 (349)
Q Consensus 110 ~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-- 187 (349)
......++++||..+.+++||+. .+...+.+..|...|+.+.+...+. +|+++++.|.|.|..+.++.....+.+.
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sg 164 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSG 164 (673)
T ss_pred hhhcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCC
Confidence 55556899999999999999997 4556678889999999999876655 5567777799999999998777777653
Q ss_pred CCeeEEEEcCCCcEE--EEecCCeEEEEecCCceeeEEEc--CCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEE
Q 018860 188 SPVTSAEVSQDGRYI--TTADGSTVKFWDANHFGLVKSYN--MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEI 263 (349)
Q Consensus 188 ~~v~~~~~~~~~~~l--~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~ 263 (349)
..+..+.+++..+++ +++++|.|.+||+....++..+. +..+...++|+|.....|++.|.|..|.+||..+....
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence 457789999988765 34678999999999887765432 23344578999988889999999999999999876665
Q ss_pred EEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCCC
Q 018860 264 ACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVT 303 (349)
Q Consensus 264 ~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~ 303 (349)
..+. -..+..+++|+++|.+|+.|+..|.|..||.....
T Consensus 245 ~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 245 DRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 5544 34688999999999999999999999999987653
No 154
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=7.8e-19 Score=160.35 Aligned_cols=285 Identities=33% Similarity=0.539 Sum_probs=220.1
Q ss_pred eeeccCCCceeeEEEeecCCCccEEEEEec-CCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCC-eeEEeeCCCeEEE
Q 018860 10 LVCHGHSRPVVDLFYSPITPDGFFLISASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNAL-RAASASADFSAKV 87 (349)
Q Consensus 10 ~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~v 87 (349)
..+.+|.+.|.++.|+| ++.++++++. |+.+++|+...+..+..+.+|...|.+++|++++. .+++++.|+.|++
T Consensus 149 ~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 149 RTLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred EEEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 34578999999999997 7778888885 99999999988889999999999999999999987 6666699999999
Q ss_pred EECCCCCEEE-Eec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEee
Q 018860 88 WDALTGDVLH-SFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCT 165 (349)
Q Consensus 88 Wd~~~~~~~~-~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 165 (349)
||...+.... .+. |...+ ...|+|++.++++++.|+.+++|++............|...+.++.|.|....+++ ++
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~ 303 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GS 303 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-ee
Confidence 9988777776 343 55554 33899999899999999999999987554322223456788999999886666666 66
Q ss_pred CCCeEEEEECCCCceEEeec--C-CCCeeEEEEcCCCcEE-EE-ecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCC
Q 018860 166 DMGGVRLWDVRSGEIVQTLE--T-KSPVTSAEVSQDGRYI-TT-ADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYG 240 (349)
Q Consensus 166 ~dg~v~vwd~~~~~~~~~~~--~-~~~v~~~~~~~~~~~l-~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
.++.+++||.++........ . ...+..+.+.+++..+ .+ ..|+.+.+|+..................+.+.+ .
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 381 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D- 381 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C-
Confidence 66889999998887665544 3 3357888884332343 44 357889999998776333333322256677777 5
Q ss_pred CEEEE-ecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 241 NKFVA-GGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 241 ~~~~~-~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
..+.. +..++.+.+|+............+...+....+++++..+++++.++++++|+...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 44554 78999999999998877666554447899999999999999999999999999865
No 155
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=3.2e-21 Score=155.17 Aligned_cols=285 Identities=20% Similarity=0.220 Sum_probs=192.4
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEee-cccCCeEEEEECCCCCeeEEeeCCCeE
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDTNALRAASASADFSA 85 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i 85 (349)
+-+.+|++|.+.|+++.|-. +.+|.+|+..|.+.+|.+++...+-.++ .|+..|+.+..-|+ ..|.|-+.|..+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa----~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQA----NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CCeeEeccccchheehhhcc----chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 34578999999999999974 4469999999999999999888777888 57788988888887 468999999999
Q ss_pred EEEECCCCCEEEEeccCCeEEEEEEcC-----CC----CEEEEEeCCCe-EEEEECCCCCC---CCceeccCCCCeEEEE
Q 018860 86 KVWDALTGDVLHSFEHKHIVRACSFSE-----DT----HLLLTGGMEKI-LRIFDLNRPDA---PPREVDRSPGSVRTVA 152 (349)
Q Consensus 86 ~vWd~~~~~~~~~~~~~~~v~~~~~s~-----~~----~~l~s~~~d~~-i~lwd~~~~~~---~~~~~~~~~~~i~~~~ 152 (349)
.+|++..+..+.. |.-.++++.|.+ .+ ..++.-+..-. ..+-|...... .........+.+.+..
T Consensus 80 ~lw~ia~s~~i~i--~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 80 ILWTIAYSAFISI--HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred EEEEccCcceEEE--eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 9999976532211 222233333321 11 11111110000 11111110000 0001112334566665
Q ss_pred EecCC--CeEEEEeeCCCeEEEEECCCCceEEee-----------cCCCCeeEEEEcCCC-cEEEEecCCeEEEEecCCc
Q 018860 153 WLHSD--QTILSTCTDMGGVRLWDVRSGEIVQTL-----------ETKSPVTSAEVSQDG-RYITTADGSTVKFWDANHF 218 (349)
Q Consensus 153 ~~~~~--~~~l~~~~~dg~v~vwd~~~~~~~~~~-----------~~~~~v~~~~~~~~~-~~l~~~~d~~i~iwd~~~~ 218 (349)
|...+ ..++++|..+|.|.+||+.++..+..+ .+..++.++.+.+.- +-+.++-+..+..|+++..
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 54433 345677888999999999987433222 245678888887532 2344555667888877532
Q ss_pred --e--eeEEEc-CCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCC
Q 018860 219 --G--LVKSYN-MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGT 293 (349)
Q Consensus 219 --~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~ 293 (349)
. ...... .++.+..+.+-| +++.++++|.|+.||+|..++...+..++.|.+.|++++|+|+...+|++|.|+.
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred cCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 1 111111 134456667776 5899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC
Q 018860 294 IRIWQT 299 (349)
Q Consensus 294 v~vW~~ 299 (349)
|-+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999975
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=2.4e-18 Score=157.16 Aligned_cols=288 Identities=28% Similarity=0.536 Sum_probs=219.1
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCC-eEEEeecccC-CeEEEEE-CCCCC-eeEEeeC-CCeE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGD-WIGTFEGHKG-AVWSCCL-DTNAL-RAASASA-DFSA 85 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~~-~v~~~~~-~~~~~-~l~s~s~-D~~i 85 (349)
.+.+|...+.++.|.+ .+..++.++.|+.+.+|+..... .+..+.++.. .+..+.+ .+++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence 3568999999999986 78889999999999999988776 7778877543 6777776 77777 5555455 9999
Q ss_pred EEEECCC-CCEEEE-eccCCeEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEE
Q 018860 86 KVWDALT-GDVLHS-FEHKHIVRACSFSEDTHLLLTGGM-EKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILS 162 (349)
Q Consensus 86 ~vWd~~~-~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 162 (349)
++|+... ...... ..|...|..++|+|++..+++++. |+.+++|++.. ......+..|...+..++|.|.+..+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEeeccCCCceEEEEEcCCcceEEE
Confidence 9999987 444444 458889999999999998888885 99999999875 2233455567889999999965554666
Q ss_pred EeeCCCeEEEEECCCCceEE-eecCCCCeeEEEEcCCCcEEE-EecCCeEEEEecCCcee-eEEE-cCCCceEEeeecCC
Q 018860 163 TCTDMGGVRLWDVRSGEIVQ-TLETKSPVTSAEVSQDGRYIT-TADGSTVKFWDANHFGL-VKSY-NMPCTIESASLEPK 238 (349)
Q Consensus 163 ~~~~dg~v~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~ 238 (349)
+++.|+.|++||.+.+.... .+..+.......|++++.++. ++.++.+++|+.+.... ...+ .+...+..+.+.|
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 294 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP- 294 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-
Confidence 66888999999999887776 455443322227899985554 56799999999986554 3333 3345677778888
Q ss_pred CCCEEEEecCCCeEEEEeCCCCcEEEEec--CCCcceeEEEEccCCCeEEEe-cCCCCEEEecCCCCC
Q 018860 239 YGNKFVAGGEDMWVRFFDFHTGNEIACNK--GHHGPVHCVRFSPGGESYASG-SEDGTIRIWQTGPVT 303 (349)
Q Consensus 239 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~sg-s~Dg~v~vW~~~~~~ 303 (349)
.+..+++++.|+.+++|+..+........ .|...+..+.|.+++..++.+ ..|+.+++|+.....
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 46677778888899999998887766655 788889999994332455555 788999999987654
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1e-19 Score=149.57 Aligned_cols=242 Identities=15% Similarity=0.303 Sum_probs=173.4
Q ss_pred ccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC--C--CeEEEeecccCCeEEEEECC--CCCeeEEeeCCCeEE
Q 018860 13 HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET--G--DWIGTFEGHKGAVWSCCLDT--NALRAASASADFSAK 86 (349)
Q Consensus 13 ~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~--~--~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~ 86 (349)
.||++-|.|+.|.+ -|+++|+||.|++++||+... + .+..+.+.|.+.|+.+.|.+ =|+.+|+|+.|++++
T Consensus 10 s~h~DlihdVs~D~---~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF---YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecc---cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 58999999999986 799999999999999999532 3 45778899999999999965 388999999999999
Q ss_pred EEECCC--CC-------EEEEe-ccCCeEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCCC-----Ccee-------c
Q 018860 87 VWDALT--GD-------VLHSF-EHKHIVRACSFSE--DTHLLLTGGMEKILRIFDLNRPDAP-----PREV-------D 142 (349)
Q Consensus 87 vWd~~~--~~-------~~~~~-~~~~~v~~~~~s~--~~~~l~s~~~d~~i~lwd~~~~~~~-----~~~~-------~ 142 (349)
||.-.. .+ ...++ .....|+.+.|.| -|-.|++++.||++|+|+...+... ..++ .
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997521 11 11222 2456899999998 4789999999999999997543211 1111 2
Q ss_pred cCCCCeEEEEEecCC--CeEEEEeeCC-----CeEEEEECCCC--ceE--Eeec-CCCCeeEEEEcCCC----cEEEE-e
Q 018860 143 RSPGSVRTVAWLHSD--QTILSTCTDM-----GGVRLWDVRSG--EIV--QTLE-TKSPVTSAEVSQDG----RYITT-A 205 (349)
Q Consensus 143 ~~~~~i~~~~~~~~~--~~~l~~~~~d-----g~v~vwd~~~~--~~~--~~~~-~~~~v~~~~~~~~~----~~l~~-~ 205 (349)
.+.....++.|++.. ..+|+.|+++ +.++||....+ ++. .++. +..+|.+++|.|+- .+|++ +
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 344567788998642 3456666654 47888876542 333 3343 46789999999973 34544 4
Q ss_pred cCCeEEEEecCCce--------------------eeEEE-cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCC
Q 018860 206 DGSTVKFWDANHFG--------------------LVKSY-NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHT 259 (349)
Q Consensus 206 ~d~~i~iwd~~~~~--------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 259 (349)
.|| |+||.+...+ .+..+ .+.+.+-.+.|+-. +..|++.|.||.+|+|...-
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt-GtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT-GTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee-eeEEeecCCCceeeehhhhh
Confidence 577 9999986311 11111 34456777777764 78899999999999998653
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=6.2e-21 Score=157.91 Aligned_cols=254 Identities=19% Similarity=0.301 Sum_probs=175.0
Q ss_pred CCCceeeEEEeecCCC-ccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCC-CeeEEeeCCCeEEEEECCC
Q 018860 15 HSRPVVDLFYSPITPD-GFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA-LRAASASADFSAKVWDALT 92 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vWd~~~ 92 (349)
|.+.-..++|+=.+.+ .-+||.|+.-|.|+|.|..++++.+.+.||...|..+.|.|+. ++++|||.|.+||+||+.+
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 5555566666543333 5589999999999999999999999999999999999999864 6889999999999999999
Q ss_pred CCEEEEec----cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc--------------ee-------------
Q 018860 93 GDVLHSFE----HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR--------------EV------------- 141 (349)
Q Consensus 93 ~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~--------------~~------------- 141 (349)
..|+..|. |...|.++.|+++|.+|+|+|.|.++++|+++.++.... .+
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 99999885 889999999999999999999999999999974332110 00
Q ss_pred ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC-CCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCcee
Q 018860 142 DRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR-SGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGL 220 (349)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~ 220 (349)
.-|...|-++.|.. .++++=+-++.|..|... -++.++..........+
T Consensus 248 diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti--------------------------- 297 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI--------------------------- 297 (385)
T ss_pred ccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceee---------------------------
Confidence 11222233333331 233333333567777552 11111111111000000
Q ss_pred eEEEcCC-Cc--eEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEE--Eec--CCCcceeEEEEccCCCeEEEecCCCC
Q 018860 221 VKSYNMP-CT--IESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIA--CNK--GHHGPVHCVRFSPGGESYASGSEDGT 293 (349)
Q Consensus 221 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~--~h~~~i~~l~~sp~~~~l~sgs~Dg~ 293 (349)
+..+..+ +. ....++.|- .+.++.|...|.+++||+...+... ++. .....|...+||.++.+|+....|++
T Consensus 298 ~~~~~~~~c~iWfirf~~d~~-~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~ 376 (385)
T KOG1034|consen 298 LGEFDYPMCDIWFIRFAFDPW-QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT 376 (385)
T ss_pred eeEeccCccceEEEEEeecHH-HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence 0111111 11 123344443 6778999999999999998766532 222 22467999999999999999999999
Q ss_pred EEEecC
Q 018860 294 IRIWQT 299 (349)
Q Consensus 294 v~vW~~ 299 (349)
|.-||.
T Consensus 377 Vwrwdr 382 (385)
T KOG1034|consen 377 VWRWDR 382 (385)
T ss_pred EEEEEe
Confidence 999974
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.4e-21 Score=166.11 Aligned_cols=207 Identities=16% Similarity=0.183 Sum_probs=166.0
Q ss_pred ccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECC-CCCeeEEeeCCCeEEEEECC
Q 018860 13 HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDT-NALRAASASADFSAKVWDAL 91 (349)
Q Consensus 13 ~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vWd~~ 91 (349)
.||++.|.++.|+-. -.+.|||||.|.++++||..++++..++..|.+.|.++.|++ .+.+|++|+.|++|++.|.+
T Consensus 240 ~gHTdavl~Ls~n~~--~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRN--FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred ccchHHHHHHHhccc--cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 489999999988753 345899999999999999999999999999999999999987 57789999999999999987
Q ss_pred C-CCEEEEeccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 018860 92 T-GDVLHSFEHKHIVRACSFSED-THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG 169 (349)
Q Consensus 92 ~-~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 169 (349)
. ...-..+...+.|..++|.|. .+.++++..||+++-+|++.++.+...++.|.++|..+.++.....++++++.++.
T Consensus 318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 4 223334556678999999885 45677788999999999999988889999999999999999999999999999999
Q ss_pred EEEEECCCCce--EEeecC-CCCeeEEEEcCCCcE--EEEecCCeEEEEecCCceee
Q 018860 170 VRLWDVRSGEI--VQTLET-KSPVTSAEVSQDGRY--ITTADGSTVKFWDANHFGLV 221 (349)
Q Consensus 170 v~vwd~~~~~~--~~~~~~-~~~v~~~~~~~~~~~--l~~~~d~~i~iwd~~~~~~~ 221 (349)
|++|++..-.. +..-.. .+...|.++.|+--+ .+++..+.+++||+-+...+
T Consensus 398 Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99999864332 221111 123456666676543 34455678999998765543
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.7e-20 Score=167.48 Aligned_cols=246 Identities=18% Similarity=0.261 Sum_probs=176.1
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEE--eecccCCeEEEEECCCC-CeeEEeeCCCeEEE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDTNA-LRAASASADFSAKV 87 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~v 87 (349)
..-.|...|.++.|-| ....|++++-|.+|+.||.++.+++.. +-||...|.++||.+.. ..++||+.||.|.|
T Consensus 95 ~~~aH~nAifDl~wap---ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAP---GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred ccccccceeEeeccCC---CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 3358999999999997 455799999999999999999988876 89999999999998854 46889999999999
Q ss_pred EECCCCCE--E-----------EE---------------eccCCeEEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCC
Q 018860 88 WDALTGDV--L-----------HS---------------FEHKHIVRA---CSFSEDTHLLLTGGM-EKILRIFDLNRPD 135 (349)
Q Consensus 88 Wd~~~~~~--~-----------~~---------------~~~~~~v~~---~~~s~~~~~l~s~~~-d~~i~lwd~~~~~ 135 (349)
||+..... + .. ..+...|.+ +-+..|...||++|. |+.|++||++.+.
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 99743210 0 00 012333444 455668888999887 9999999998665
Q ss_pred CCCce-------eccC---CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc--eEEeecCCC---CeeEEEEcCCCc
Q 018860 136 APPRE-------VDRS---PGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGE--IVQTLETKS---PVTSAEVSQDGR 200 (349)
Q Consensus 136 ~~~~~-------~~~~---~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~---~v~~~~~~~~~~ 200 (349)
...+. +..+ .-.+.++.....+.++++.|. |+.|..|++++-. ++..+.++. -...-..+|++.
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence 43221 1112 113445555556788999998 5999999998643 233333321 122334689998
Q ss_pred EEEE-ecCCeEEEEecCCcee--eEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCC
Q 018860 201 YITT-ADGSTVKFWDANHFGL--VKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTG 260 (349)
Q Consensus 201 ~l~~-~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~ 260 (349)
++++ +.|....+|.+.+... .....+...+..++|.|....-++++++|..+++|++..+
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 8765 4689999999876542 2222334457788888887888999999999999998653
No 161
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=2.7e-20 Score=152.11 Aligned_cols=206 Identities=17% Similarity=0.281 Sum_probs=166.3
Q ss_pred ccCCeEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCC--------------ceeccCCCCeEEEEEecCCCeEEEEe
Q 018860 100 EHKHIVRACSFSE-DTHLLLTGGMEKILRIFDLNRPDAPP--------------REVDRSPGSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 100 ~~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~~~~--------------~~~~~~~~~i~~~~~~~~~~~~l~~~ 164 (349)
.|.+.|+++...+ .|+++++|+.|+.|.+||+....... .....|+-.|.++.|.|-+.-++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3778899999877 68999999999999999997543110 01234556789999999888888888
Q ss_pred eCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCC---cEEEEec-CCeEEEEecCCceeeEEEcC-CCceEEeeecCCC
Q 018860 165 TDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDG---RYITTAD-GSTVKFWDANHFGLVKSYNM-PCTIESASLEPKY 239 (349)
Q Consensus 165 ~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~-d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~ 239 (349)
+-|.+++|||..+-+....+..+..|.+-+.+|-. .+++++. +-.|++-|+..+.+.+.+.. ...+.++.|+|..
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 88999999999999888888888778877788743 3445554 77999999999998887754 4678999999998
Q ss_pred CCEEEEecCCCeEEEEeCCCC-cEEE--------------EecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCCCC
Q 018860 240 GNKFVAGGEDMWVRFFDFHTG-NEIA--------------CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTN 304 (349)
Q Consensus 240 ~~~~~~~~~d~~i~v~d~~~~-~~~~--------------~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~~ 304 (349)
.-.|++|+.|+.||+||++.. .++. +-..|.+.+..+||+.++.+|++.+.|..+++|+...+.+
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 888899999999999998754 2222 2246889999999999999999999999999999866543
Q ss_pred C
Q 018860 305 D 305 (349)
Q Consensus 305 ~ 305 (349)
.
T Consensus 281 t 281 (397)
T KOG4283|consen 281 T 281 (397)
T ss_pred c
Confidence 3
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=4.1e-20 Score=150.63 Aligned_cols=275 Identities=21% Similarity=0.228 Sum_probs=191.1
Q ss_pred ceeeccCCCceeeEEEeecCCCccEEEEEecCC-------CeEEEeCCC---------CCeEEEee-cccCCeEEEEECC
Q 018860 9 PLVCHGHSRPVVDLFYSPITPDGFFLISASKDS-------SPMLRNGET---------GDWIGTFE-GHKGAVWSCCLDT 71 (349)
Q Consensus 9 ~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~-------~i~iw~~~~---------~~~~~~~~-~h~~~v~~~~~~~ 71 (349)
..+|..|.+.|..++-+|. +.+.|+++-.+- .+.||.+.. -+++..+. .|-+.|.|+.|.|
T Consensus 56 skvf~h~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P 133 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP 133 (370)
T ss_pred hhhhhcCCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC
Confidence 3466788999999998884 455777775532 367897532 23455555 4666899999999
Q ss_pred CCCeeEEeeCCCeEEEEECCCCCE-EEEec------cCCeEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCCCCceec
Q 018860 72 NALRAASASADFSAKVWDALTGDV-LHSFE------HKHIVRACSFSE--DTHLLLTGGMEKILRIFDLNRPDAPPREVD 142 (349)
Q Consensus 72 ~~~~l~s~s~D~~i~vWd~~~~~~-~~~~~------~~~~v~~~~~s~--~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~ 142 (349)
++..|++-. |..|.+|++.++.. +..+. +....++-+|+| +++.+++. .|++++.||+++......+-.
T Consensus 134 ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 134 NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh
Confidence 999888766 88999999987755 33332 445677788987 78887764 588999999987666555556
Q ss_pred cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC-ceEEeecCC-CCeeEEEEcCCC--cEEEEecCCeEEEEecCCc
Q 018860 143 RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSG-EIVQTLETK-SPVTSAEVSQDG--RYITTADGSTVKFWDANHF 218 (349)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~-~~v~~~~~~~~~--~~l~~~~d~~i~iwd~~~~ 218 (349)
.|...+..+.|.|+.+.+|++|++||.||+||.|.- .++..+..+ .-+.+++|+|.- .+|+++.|..|.+|-...-
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 677789999999999999999999999999999864 466777654 479999999853 3456677999999876432
Q ss_pred eeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCe-EEEecCCCCEEEe
Q 018860 219 GLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIW 297 (349)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~-l~sgs~Dg~v~vW 297 (349)
.....+........ .+. .|..-|+ ..-....+.++..|...|++++||.-.++ +||-|.||.+-|=
T Consensus 292 SSE~qi~~~~dese---~e~---------~dseer~-kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 292 SSEQQIEFEDDESE---SED---------EDSEERV-KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred cccccccccccccc---Ccc---------hhhHHhc-ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence 21111111100000 000 0000000 01111234566789999999999988876 6799999999887
Q ss_pred cCC
Q 018860 298 QTG 300 (349)
Q Consensus 298 ~~~ 300 (349)
++.
T Consensus 359 ~V~ 361 (370)
T KOG1007|consen 359 SVP 361 (370)
T ss_pred cCC
Confidence 664
No 163
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=1.5e-19 Score=162.80 Aligned_cols=295 Identities=19% Similarity=0.285 Sum_probs=206.7
Q ss_pred CccccccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC--CeEEEeecccCCeEEEEECCCCCeeEEe
Q 018860 2 DKKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDTNALRAASA 79 (349)
Q Consensus 2 ~~~~~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 79 (349)
|+.+..+...++||.++|+|+.|-|.+.--.+|+||+.|+.+++|.+... .++.++.+|...+ +++..........
T Consensus 40 dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~--~cv~a~~~~~~~~ 117 (764)
T KOG1063|consen 40 DPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKEC--VCVVARSSVMTCK 117 (764)
T ss_pred CcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeE--EEEEeeeeEEEee
Confidence 34445567778999999999999874432338999999999999998733 3577888877665 4554443333334
Q ss_pred eCCCeEEEEECCCCC--EEEEecc--CC-eEEEEEEcC-CCC-EEEEEeCCCeEEEEECCCCC-CCCceeccCCCCeEEE
Q 018860 80 SADFSAKVWDALTGD--VLHSFEH--KH-IVRACSFSE-DTH-LLLTGGMEKILRIFDLNRPD-APPREVDRSPGSVRTV 151 (349)
Q Consensus 80 s~D~~i~vWd~~~~~--~~~~~~~--~~-~v~~~~~s~-~~~-~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~~~~i~~~ 151 (349)
+.|+++.+||.+..+ +...+.. +. ...++++.+ .+. +++.|+.+..|.++.-...+ .....+.+|...|.++
T Consensus 118 ~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl 197 (764)
T KOG1063|consen 118 AADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSL 197 (764)
T ss_pred ccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhh
Confidence 789999999996555 3333332 11 223555556 334 34556677778888754222 2335678999999999
Q ss_pred EEecCC--CeEEEEeeCCCeEEEEECCCCc---------------------eEEee-----------cCCCCeeEEEEcC
Q 018860 152 AWLHSD--QTILSTCTDMGGVRLWDVRSGE---------------------IVQTL-----------ETKSPVTSAEVSQ 197 (349)
Q Consensus 152 ~~~~~~--~~~l~~~~~dg~v~vwd~~~~~---------------------~~~~~-----------~~~~~v~~~~~~~ 197 (349)
+|.... ..++++++.|..||+|.+.-+. ....+ .|..-|.++.|+|
T Consensus 198 ~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p 277 (764)
T KOG1063|consen 198 AFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP 277 (764)
T ss_pred hhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc
Confidence 987654 5788999999999999875322 11011 1234689999999
Q ss_pred CC-cEEEEecCCeEEEEecCCce--e---eEEEcC---CCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCc---EEEE
Q 018860 198 DG-RYITTADGSTVKFWDANHFG--L---VKSYNM---PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGN---EIAC 265 (349)
Q Consensus 198 ~~-~~l~~~~d~~i~iwd~~~~~--~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~ 265 (349)
.+ .+|+++.|.++.+|...... - ++.-.. ...+....|+|. ++.+++-+.-|..++|...... ....
T Consensus 278 ~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n-~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~ 356 (764)
T KOG1063|consen 278 EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN-SNVIIAHGRTGGFHLWKTKDKTFWTQEPV 356 (764)
T ss_pred chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC-CCEEEEecccCcEEEEeccCccceeeccc
Confidence 99 66788889999999876541 1 111111 223566677774 6888899999999999843322 2334
Q ss_pred ecCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 266 NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 266 ~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
..||.+.|..++|+|.|.+|+|.|.|.+-|++-.
T Consensus 357 iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred cccccccceeeeecCCCCEEEEeccccceeeecc
Confidence 6799999999999999999999999999999754
No 164
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=5.2e-21 Score=175.33 Aligned_cols=278 Identities=21% Similarity=0.252 Sum_probs=205.0
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECC
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDAL 91 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~ 91 (349)
+.||...|+|+.|.- .|.++++|+.|.-++||..++..++.+++||.+.|+.++.+.+...++++|.|..||+|.+.
T Consensus 186 LlgH~naVyca~fDr---tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDR---TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHhhhhheeeeeecc---ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 479999999999984 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CC-CCCceeccC-CCCeEEEEEecCCCeEEEEeeCC
Q 018860 92 TGDVLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNR-PD-APPREVDRS-PGSVRTVAWLHSDQTILSTCTDM 167 (349)
Q Consensus 92 ~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~-~~-~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~d 167 (349)
.+..+..+ .|.+.|++++|+|-- +.+.||++++||.+- +. ...+..... ...+.++.|.. ...-+.+++++
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRD 337 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccc-cccccccccCC
Confidence 99888775 599999999999943 778999999999861 11 111111111 22344444443 33446688888
Q ss_pred CeEEEEECCCCceEEeecCCCCeeEEEEcCCC-cEE-EEecCCeEEEEecCCceeeEEEc-CCCceEEeeecCCCCCEEE
Q 018860 168 GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDG-RYI-TTADGSTVKFWDANHFGLVKSYN-MPCTIESASLEPKYGNKFV 244 (349)
Q Consensus 168 g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l-~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 244 (349)
+.-+.|.+..-.+.. ..+.-+..+.+- .+. ++-.+-.+.+|++.++.+.+... +......+.++|.+.....
T Consensus 338 ~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 338 GEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred cccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence 888888664321100 001001111111 222 23345678889998887665543 3445677888887777778
Q ss_pred EecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 245 AGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 245 ~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
+++.||...|||+..|..++.+.--.+.+..-+||++|..++....-|.+.|..++..
T Consensus 413 sag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred hccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 9999999999999988876654322455677789999999988888888999877543
No 165
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.6e-18 Score=137.02 Aligned_cols=258 Identities=15% Similarity=0.215 Sum_probs=184.7
Q ss_pred CCccEEEEEecCCCeEEEeCCC----------CCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCE-EE
Q 018860 29 PDGFFLISASKDSSPMLRNGET----------GDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDV-LH 97 (349)
Q Consensus 29 ~~~~~l~s~s~d~~i~iw~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~-~~ 97 (349)
|.++||+.|+.+|+|.+..+.+ ...+-..++|.++|+.++|..+ .|++|+ ||.|+=|.-+.... .+
T Consensus 20 p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~g-dG~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 20 PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGG-DGLVYGWEWNEEEESLA 96 (325)
T ss_pred CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeecc-CceEEEeeehhhhhhcc
Confidence 4899999999999999986432 2245667899999999999844 677777 59999997543322 11
Q ss_pred E---ec-----cC-----CeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEe
Q 018860 98 S---FE-----HK-----HIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 98 ~---~~-----~~-----~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 164 (349)
. .+ |. ..|+++.+.|..+-++.++.|+.+..||+.+++ ..+.+.+|...+.++.--...+.++ +|
T Consensus 97 ~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~qil-sG 174 (325)
T KOG0649|consen 97 TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQIL-SG 174 (325)
T ss_pred chhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCccee-ec
Confidence 1 11 22 247899999988888888899999999998654 4678899999999987544555555 67
Q ss_pred eCCCeEEEEECCCCceEEeecCCC-----------CeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEe
Q 018860 165 TDMGGVRLWDVRSGEIVQTLETKS-----------PVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESA 233 (349)
Q Consensus 165 ~~dg~v~vwd~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 233 (349)
+.||++|+||.+++++++.++... .+.++ .-+..+++|+.+..+.+|.++...+...+.++..+..+
T Consensus 175 ~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v 252 (325)
T KOG0649|consen 175 AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLV 252 (325)
T ss_pred CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecCCCceeEEeccCCCceEEEecccceeEe
Confidence 788999999999999998875311 13333 34556999999999999999999999999999888777
Q ss_pred eecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCC-CeEEEecCCCCEEEe
Q 018860 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIW 297 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~sgs~Dg~v~vW 297 (349)
.|. .+.+++++..+.+.-|.+. |..-......+-..++..++..- ++|-.++..+.+.+.
T Consensus 253 ~F~---~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 253 DFV---DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eee---cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 775 4578888888888888764 22222223223334444443222 234445556666665
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=1.8e-17 Score=148.07 Aligned_cols=264 Identities=12% Similarity=0.200 Sum_probs=175.4
Q ss_pred EEEecCCCeEEEeCCC-CC--eEEEeecccCCeEEEEECCCCCeeEEe-eCCCeEEEEECC-CCCE--EEEeccCCeEEE
Q 018860 35 ISASKDSSPMLRNGET-GD--WIGTFEGHKGAVWSCCLDTNALRAASA-SADFSAKVWDAL-TGDV--LHSFEHKHIVRA 107 (349)
Q Consensus 35 ~s~s~d~~i~iw~~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~D~~i~vWd~~-~~~~--~~~~~~~~~v~~ 107 (349)
++...|+.|.+|+..+ ++ .+++++. ......++++|++++|+.+ ..++.|.+|++. ++.. +...........
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3446789999999864 43 4566653 3456678999999988665 458899999986 3432 233333445678
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEECCCCCCCCcee--ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEE--
Q 018860 108 CSFSEDTHLLLTGG-MEKILRIFDLNRPDAPPREV--DRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQ-- 182 (349)
Q Consensus 108 ~~~s~~~~~l~s~~-~d~~i~lwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-- 182 (349)
++|+|+++++++++ .++.|.+|+++......... ..+......+.++|++..++++...++.|.+||+.+...+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 99999999998877 48899999986433221111 11223356677888887888888888999999997632221
Q ss_pred -----eecCCCCeeEEEEcCCCcEEEEe-c-CCeEEEEecCC--c--eeeEEEcC-CC------ceEEeeecCCCCCEEE
Q 018860 183 -----TLETKSPVTSAEVSQDGRYITTA-D-GSTVKFWDANH--F--GLVKSYNM-PC------TIESASLEPKYGNKFV 244 (349)
Q Consensus 183 -----~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~--~--~~~~~~~~-~~------~~~~~~~~~~~~~~~~ 244 (349)
..........+.|+|+++++.++ . +++|.+||+.. . ..+..+.. +. ....+.++|+ +++++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd-g~~ly 243 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD-GRHLY 243 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC-CCEEE
Confidence 12223445678999999987554 3 79999999973 2 23333321 11 1224667774 67776
Q ss_pred Ee-cCCCeEEEEeCCCCcEEEEecCCC---cceeEEEEccCCCeEEEecC-CCCEEEecCC
Q 018860 245 AG-GEDMWVRFFDFHTGNEIACNKGHH---GPVHCVRFSPGGESYASGSE-DGTIRIWQTG 300 (349)
Q Consensus 245 ~~-~~d~~i~v~d~~~~~~~~~~~~h~---~~i~~l~~sp~~~~l~sgs~-Dg~v~vW~~~ 300 (349)
++ ..++.|.+|++........+.++. .....++|+|+|++|+++.. +++|.+|+++
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 66 457899999986543211222221 24567899999999987665 8999999864
No 167
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1e-18 Score=153.84 Aligned_cols=167 Identities=18% Similarity=0.218 Sum_probs=134.9
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEee-cccCCeEEEEECC--CCCeeEEeeCCC
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDT--NALRAASASADF 83 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~D~ 83 (349)
+--.+|.||++.|+|+.|+. +|.+|+|||.|-.+.|||.-..++++.+. ||.+.|.++.|-| +..+++||+.|.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred chhhhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 44467789999999999996 89999999999999999998888888875 8999999999976 566899999999
Q ss_pred eEEEEECCCCC----------EEEEe-ccCCeEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCce---------ec
Q 018860 84 SAKVWDALTGD----------VLHSF-EHKHIVRACSFSEDT-HLLLTGGMEKILRIFDLNRPDAPPRE---------VD 142 (349)
Q Consensus 84 ~i~vWd~~~~~----------~~~~~-~~~~~v~~~~~s~~~-~~l~s~~~d~~i~lwd~~~~~~~~~~---------~~ 142 (349)
.|+++|+...+ ..+.+ .|...|.-++-.|++ +.+-+++.||+||-+|++.+...... +.
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 99999987421 12222 377888889999988 88999999999999999864432211 11
Q ss_pred cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 018860 143 RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR 176 (349)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~ 176 (349)
..--...++..+|....+|+.|+.+--.++||.|
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 1122457888899999999999998999999954
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=5.2e-19 Score=152.41 Aligned_cols=250 Identities=18% Similarity=0.174 Sum_probs=181.7
Q ss_pred cccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCC--eEEEeecccCCeEEEEECCCCCeeEEeeCCC
Q 018860 6 IAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDTNALRAASASADF 83 (349)
Q Consensus 6 ~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 83 (349)
.+..+.+.+|..+|.++.|+|.+++ .+++.|+||+|+.-|.+++. .+.+++.-...+..+.|+.+...++.+..=|
T Consensus 224 ~d~v~~f~~hs~~Vs~l~F~P~n~s--~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G 301 (498)
T KOG4328|consen 224 KDGVYLFTPHSGPVSGLKFSPANTS--QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG 301 (498)
T ss_pred cCceEEeccCCccccceEecCCChh--heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc
Confidence 4667888999999999999997654 78899999999999987653 3344443444566778888888888888877
Q ss_pred eEEEEECCCCCE--EEEeccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCC---ceeccCCCCeEEEEEecCC
Q 018860 84 SAKVWDALTGDV--LHSFEHKHIVRACSFSED-THLLLTGGMEKILRIFDLNRPDAPP---REVDRSPGSVRTVAWLHSD 157 (349)
Q Consensus 84 ~i~vWd~~~~~~--~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~~~---~~~~~~~~~i~~~~~~~~~ 157 (349)
...+||.+++.. .+..-|...|+.++++|. -.+|+|+|.|++.++||++.-.... .....|...|.+..|+|.+
T Consensus 302 ~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 302 NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 999999877643 222237779999999995 4688999999999999997543222 2345677889999999999
Q ss_pred CeEEEEeeCCCeEEEEECC----CCceEEeecCCC------CeeEEEEcCCCcEEEEec-CCeEEEEecCCceeeEEEcC
Q 018860 158 QTILSTCTDMGGVRLWDVR----SGEIVQTLETKS------PVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYNM 226 (349)
Q Consensus 158 ~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~ 226 (349)
+.++.+|.+ ..|||||.. .-.+..++.|.. ......|.|+..+++.+. -..|.++|...++.+..+..
T Consensus 382 gtl~TT~~D-~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~ 460 (498)
T KOG4328|consen 382 GTLLTTCQD-NEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD 460 (498)
T ss_pred CceEeeccC-CceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC
Confidence 997766655 899999983 333444444422 123457899888887765 67799999998887766554
Q ss_pred CCc--e-EEeeecCCCCCEEEEecCCCeEEEEeCC
Q 018860 227 PCT--I-ESASLEPKYGNKFVAGGEDMWVRFFDFH 258 (349)
Q Consensus 227 ~~~--~-~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 258 (349)
+.. + .-..++|.....++.++..|.|++|-..
T Consensus 461 P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 461 PESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccccccceeecccccceeccCCccceEEEEecC
Confidence 432 2 2346777533344445567888888644
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=1.1e-18 Score=148.40 Aligned_cols=279 Identities=17% Similarity=0.214 Sum_probs=188.1
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC---------CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEE
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG---------DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKV 87 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~v 87 (349)
.||..+.|.+.+.+ .|+||+.|..|+||....+ +.+.++..|...|++|.|+++|..|+||+.+|.|-+
T Consensus 14 ~pv~s~dfq~n~~~--~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLN--KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CceEEEEeccCccc--ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 68999999874432 8999999999999964321 346778899999999999999999999999999999
Q ss_pred EECC--------C-----CC---EEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEE
Q 018860 88 WDAL--------T-----GD---VLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRT 150 (349)
Q Consensus 88 Wd~~--------~-----~~---~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~ 150 (349)
|... + .+ ..+.. .|..-|..++|+|+++++++++.|..+++||+..... ...+..|...+.-
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQG 170 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccce
Confidence 9865 2 10 11222 2778899999999999999999999999999976543 4456778888999
Q ss_pred EEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec-----------CC-------------CCeeEEEEcCCCcEEEEec
Q 018860 151 VAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE-----------TK-------------SPVTSAEVSQDGRYITTAD 206 (349)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-----------~~-------------~~v~~~~~~~~~~~l~~~~ 206 (349)
++|.|-++++..-+.+ ...+.+.+...+.++.+. .. .-...++|+|+|.++++..
T Consensus 171 vawDpl~qyv~s~s~d-r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSD-RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eecchhhhhhhhhccC-cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 9998877665544443 555555554332221110 01 1234567889998876532
Q ss_pred -----CCeE-----EEEecCC-ceeeEEEcCCC-ceEEeeec-------CCC---------CCEEEEecCCCeEEEEeCC
Q 018860 207 -----GSTV-----KFWDANH-FGLVKSYNMPC-TIESASLE-------PKY---------GNKFVAGGEDMWVRFFDFH 258 (349)
Q Consensus 207 -----d~~i-----~iwd~~~-~~~~~~~~~~~-~~~~~~~~-------~~~---------~~~~~~~~~d~~i~v~d~~ 258 (349)
++.+ .+|+-.. .++.-.++.+. ....+.++ |.. -+.+++-...+.+++||..
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq 329 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQ 329 (434)
T ss_pred ceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccc
Confidence 3333 2332211 11111111110 01111111 110 1233444455689999999
Q ss_pred CCcEEEEe-cCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 259 TGNEIACN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 259 ~~~~~~~~-~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
+-..+... .-|..+|+.++|+++|..|+..|.||.+-+--.
T Consensus 330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 88877654 458899999999999999999999998776443
No 170
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=9.6e-18 Score=151.02 Aligned_cols=237 Identities=15% Similarity=0.202 Sum_probs=185.8
Q ss_pred ccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec---cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCC
Q 018860 60 HKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE---HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDA 136 (349)
Q Consensus 60 h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~ 136 (349)
-...|.++|++.+...||.+=.||.|-+|++..+-....+- ....|.+++|+ ++..|+|.+.+|.|.-||+.+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 34679999999999999999999999999998876544332 23579999999 455688999999999999976443
Q ss_pred CCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEee--c-CCCCeeEEEEcCCCcEEEE-ecCCeEEE
Q 018860 137 PPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTL--E-TKSPVTSAEVSQDGRYITT-ADGSTVKF 212 (349)
Q Consensus 137 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~-~~d~~i~i 212 (349)
........+.|.+++..|....+. .+.+||.+..++...++..... . .++.+.++.|+|++..+++ +.|+.|++
T Consensus 103 -~~~~d~~gg~IWsiai~p~~~~l~-IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 103 -KYNIDSNGGAIWSIAINPENTILA-IGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred -eEEecCCCcceeEEEeCCccceEE-eecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 445566678899999887665544 5556798888888887765443 2 2467999999999986554 56999999
Q ss_pred EecCCceeeEEEcC-----C----CceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCC
Q 018860 213 WDANHFGLVKSYNM-----P----CTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGE 283 (349)
Q Consensus 213 wd~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~ 283 (349)
||..++.......+ . .-+-++.+- ....+++|..-|+|.+||...+..++..+.|.+-|.+|+..++++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence 99998876663221 1 122344443 256899999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCEEEecCCC
Q 018860 284 SYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 284 ~l~sgs~Dg~v~vW~~~~ 301 (349)
++.+++.|++|-.+....
T Consensus 259 ~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred eEEEccCCCceEEEEecC
Confidence 999999999988776543
No 171
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=8e-19 Score=151.44 Aligned_cols=238 Identities=16% Similarity=0.269 Sum_probs=183.8
Q ss_pred cCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC--CEEEEec-cCCeEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCC
Q 018860 61 KGAVWSCCLDTNALRAASASADFSAKVWDALTG--DVLHSFE-HKHIVRACSFSEDTH-LLLTGGMEKILRIFDLNRPDA 136 (349)
Q Consensus 61 ~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~--~~~~~~~-~~~~v~~~~~s~~~~-~l~s~~~d~~i~lwd~~~~~~ 136 (349)
.+.|+++.|+|....|++||.|++++||.+... ..++.+. ..-+|.+++|.|+|. .+++++..+....||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 357999999999999999999999999988643 2344433 345799999999999 899999999999999976543
Q ss_pred CC-ceeccCC-CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEE-EEecCCeEEEE
Q 018860 137 PP-REVDRSP-GSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYI-TTADGSTVKFW 213 (349)
Q Consensus 137 ~~-~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~iw 213 (349)
.. ..+.++. ..+.....+| ++.+++..+..|.|.+--..+++.+.++.....+..+.|+.+++.| +++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 21 1222222 2334444455 4457777777899999999999999999999999999999998765 55678999999
Q ss_pred ecCCceeeEEEcCCCceE--EeeecCCCCCEEEEecCCCeEEEEeCCC------CcEEEEecCCCcceeEEEEccCCCeE
Q 018860 214 DANHFGLVKSYNMPCTIE--SASLEPKYGNKFVAGGEDMWVRFFDFHT------GNEIACNKGHHGPVHCVRFSPGGESY 285 (349)
Q Consensus 214 d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~v~d~~~------~~~~~~~~~h~~~i~~l~~sp~~~~l 285 (349)
|++...+++.+.....+. +++.++ ++.+||+|+..|.|-|||..+ .++++.+..-...|++|.|+|+.+.|
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 999999998887665554 444444 478999999999999999653 34455555567789999999999998
Q ss_pred EEec--CCCCEEEecCC
Q 018860 286 ASGS--EDGTIRIWQTG 300 (349)
Q Consensus 286 ~sgs--~Dg~v~vW~~~ 300 (349)
|.+| .+..+|+-.+.
T Consensus 451 AiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVP 467 (514)
T ss_pred hhhhhccccceEEEecc
Confidence 7665 46678887654
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=3e-18 Score=161.02 Aligned_cols=279 Identities=16% Similarity=0.278 Sum_probs=190.1
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeeccc---CCeEEEEEC--CCCCeeEEeeCCCeEEEEECC
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHK---GAVWSCCLD--TNALRAASASADFSAKVWDAL 91 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~---~~v~~~~~~--~~~~~l~s~s~D~~i~vWd~~ 91 (349)
.+...+.|+|..+ .++++...-.|++||.+.++.+..|.-+. ..|..+++- .|...+++|+.||.||||+-.
T Consensus 1065 ~~pk~~~~hpf~p---~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP---QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCCceeeecCCCc---eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 3556778888665 47766655689999999888887776543 457778773 356689999999999999742
Q ss_pred C-----CCEEEEec--------cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCC
Q 018860 92 T-----GDVLHSFE--------HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQ 158 (349)
Q Consensus 92 ~-----~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (349)
. .+.+..+. ..+.-.-+.|....-+|+++|.-+.||+||........-...+....++++.-.-..+
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 2 12232221 1111134567776556666677899999998754433222334455677776555556
Q ss_pred eEEEEeeCCCeEEEEECCCCce---EEeec-CCC--CeeEEEEcCCC--cEEEEecCCeEEEEecCCceeeEEEcC----
Q 018860 159 TILSTCTDMGGVRLWDVRSGEI---VQTLE-TKS--PVTSAEVSQDG--RYITTADGSTVKFWDANHFGLVKSYNM---- 226 (349)
Q Consensus 159 ~~l~~~~~dg~v~vwd~~~~~~---~~~~~-~~~--~v~~~~~~~~~--~~l~~~~d~~i~iwd~~~~~~~~~~~~---- 226 (349)
.++++|-.||.||+||.|.... +.... +.. +|..+.+.++| ++++++.+|.|++||++.......+..
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 7788888889999999986432 33332 332 47888888765 567778899999999997422222221
Q ss_pred --CCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecC-------CCcceeEEEEccCCCeEEEecCCCCEEEe
Q 018860 227 --PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKG-------HHGPVHCVRFSPGGESYASGSEDGTIRIW 297 (349)
Q Consensus 227 --~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-------h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW 297 (349)
.....++..++ ....+++|+. +.|.||++. |+.+..++. ..+.+.|++|+|..-.||.|+.|.+|.||
T Consensus 1302 ~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1302 EYGSALTALTVHE-HAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccCccceeeeecc-CCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 12255666665 3677888877 999999985 344433321 24578999999999999999999999999
Q ss_pred cCCC
Q 018860 298 QTGP 301 (349)
Q Consensus 298 ~~~~ 301 (349)
...+
T Consensus 1379 s~~k 1382 (1387)
T KOG1517|consen 1379 SCEK 1382 (1387)
T ss_pred ecCC
Confidence 7654
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=8.8e-18 Score=154.73 Aligned_cols=260 Identities=14% Similarity=0.124 Sum_probs=190.2
Q ss_pred CCeEEEeCCCC-CeEEEeecccCCeEEEEECCC-CCeeEEeeCCCeEEEEECCCCCEE-------EEeccCCeEEEEEEc
Q 018860 41 SSPMLRNGETG-DWIGTFEGHKGAVWSCCLDTN-ALRAASASADFSAKVWDALTGDVL-------HSFEHKHIVRACSFS 111 (349)
Q Consensus 41 ~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~-------~~~~~~~~v~~~~~s 111 (349)
+.+.+|+..+. .+-..+.. ..+|+|++|+|. ..+++.|..+|.|-+||+..+... ..-.|..++..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 46889998765 44455544 457999999884 557778889999999999876541 222478889999996
Q ss_pred CCC--CEEEEEeCCCeEEEEECCCCCCCCcee----c-------cCCCCeEEEEEecCCCeEEEEeeCCCeEEEE---EC
Q 018860 112 EDT--HLLLTGGMEKILRIFDLNRPDAPPREV----D-------RSPGSVRTVAWLHSDQTILSTCTDMGGVRLW---DV 175 (349)
Q Consensus 112 ~~~--~~l~s~~~d~~i~lwd~~~~~~~~~~~----~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vw---d~ 175 (349)
.+. .-+++++.||.|..|+++.-..+.... . .....++++.|.+.+.+.+..|+++|.|..= +.
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 643 459999999999999986433321110 0 1123578899999999999999999998773 33
Q ss_pred CCCc-----eE-EeecCCCCeeEEEEcCCCcE-EEEecCCeEEEEecC-CceeeEEEcCCC-ceEEeeecCCCCCEEEEe
Q 018860 176 RSGE-----IV-QTLETKSPVTSAEVSQDGRY-ITTADGSTVKFWDAN-HFGLVKSYNMPC-TIESASLEPKYGNKFVAG 246 (349)
Q Consensus 176 ~~~~-----~~-~~~~~~~~v~~~~~~~~~~~-l~~~~d~~i~iwd~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 246 (349)
+.+. .+ ....+..++..+.++|-... +.++.|.+++||... ...++..+.... .+..++|+|.....|+++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 3322 11 22234578999999997743 344559999999987 555655554443 478899999888889999
Q ss_pred cCCCeEEEEeCCCCc--EEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 247 GEDMWVRFFDFHTGN--EIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 247 ~~d~~i~v~d~~~~~--~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
..||.|.+||+.... .+...+.+....+.+.|+++|+.|+.|...|++++|++..
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999999996543 3444445566778888999999999999999999999853
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=1.6e-18 Score=146.97 Aligned_cols=203 Identities=19% Similarity=0.308 Sum_probs=149.6
Q ss_pred EeecccCCeEEEEECC-CCCeeEEeeCCCeEEEEECCCCCEEE-------Ee-ccCCeEEEEEEcCC-CCEEEEEeCCCe
Q 018860 56 TFEGHKGAVWSCCLDT-NALRAASASADFSAKVWDALTGDVLH-------SF-EHKHIVRACSFSED-THLLLTGGMEKI 125 (349)
Q Consensus 56 ~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~-------~~-~~~~~v~~~~~s~~-~~~l~s~~~d~~ 125 (349)
.+.||+++|..++|+| +...|||||.|.+|+||.+..+...+ .+ .|...|..++|+|. .+.|+|+|.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4579999999999987 56789999999999999987664322 22 48889999999996 578899999999
Q ss_pred EEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCC--CeeEEEEcCCCcEEE
Q 018860 126 LRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKS--PVTSAEVSQDGRYIT 203 (349)
Q Consensus 126 i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~ 203 (349)
|.+|++.++..... + .|+..|.++.|+.++. ++++...|+.|||||.|+++.+..-..+. .-..+.|..++.+++
T Consensus 156 v~iWnv~tgeali~-l-~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT-L-DHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeee-c-CCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 99999987664333 3 3999999999986555 55566667999999999999988764332 234556777888877
Q ss_pred Eec----CCeEEEEecCCcee---eEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCc
Q 018860 204 TAD----GSTVKFWDANHFGL---VKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGN 261 (349)
Q Consensus 204 ~~~----d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 261 (349)
++. ++++-+||..+... ...+.....+.---+.++..-.+++|=.|+.||.|.+....
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 763 67899999876432 23333344444334455433334566679999999986544
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.4e-17 Score=149.42 Aligned_cols=284 Identities=18% Similarity=0.211 Sum_probs=199.7
Q ss_pred ccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC----CCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEE
Q 018860 13 HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET----GDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVW 88 (349)
Q Consensus 13 ~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vW 88 (349)
..|+.+++|.++|| +++++|+|-.||.|.+|..-. ..-...+.-|.+.|.+++|+++|.+|.|||..+.+-+|
T Consensus 202 ~~Htf~~t~~~~sp---n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 202 VHHTFNITCVALSP---NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhhcccceeEEecc---ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 36888899999997 899999999999999996322 12345667799999999999999999999999999999
Q ss_pred ECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC---------ceec-cCCCCeEEEEEecCCC
Q 018860 89 DALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPP---------REVD-RSPGSVRTVAWLHSDQ 158 (349)
Q Consensus 89 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~---------~~~~-~~~~~i~~~~~~~~~~ 158 (349)
...+++...--+-..+|..+.++||+++.+....|..|.+-....-.... ...+ +..+-.+.+.+.|.-+
T Consensus 279 q~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 279 QLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred eecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 99998722222356789999999999999999999999988763221100 0000 1122234556666333
Q ss_pred eEEEEeeCCCeEEEEECCCCceEEeecC------C------CCeeEEEEcCCCcEEEEec---------CC--eEEEEec
Q 018860 159 TILSTCTDMGGVRLWDVRSGEIVQTLET------K------SPVTSAEVSQDGRYITTAD---------GS--TVKFWDA 215 (349)
Q Consensus 159 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~------~------~~v~~~~~~~~~~~l~~~~---------d~--~i~iwd~ 215 (349)
.++-.+..|.|.+||+.+.+.+..+.. . -+++++..+-.|.++++.+ |+ .+++|-.
T Consensus 359 -~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~ 437 (792)
T KOG1963|consen 359 -SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY 437 (792)
T ss_pred -ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence 344455669999999987765544321 1 1355666666788887653 22 4788965
Q ss_pred CC----ceeeEEEcCCCc--eEEeeec-CCCCCEEEEecCCCeEEEEeCCCCc----------EEEEecCCCcceeEEEE
Q 018860 216 NH----FGLVKSYNMPCT--IESASLE-PKYGNKFVAGGEDMWVRFFDFHTGN----------EIACNKGHHGPVHCVRF 278 (349)
Q Consensus 216 ~~----~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~h~~~i~~l~~ 278 (349)
+. +.+......|.. +...++. +.....+++++.|+.+++|-+..-+ +...-..|..++.+++|
T Consensus 438 n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 438 NPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred cCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 43 344444444543 3344444 3333389999999999999883321 22222357899999999
Q ss_pred ccCCCeEEEecCCCCEEEecCCC
Q 018860 279 SPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 279 sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
+.||. +++.|.|++|.+||...
T Consensus 518 s~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 518 SQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred cCCCc-EEEEecCCEEEEecCCC
Confidence 99995 55688999999999876
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.2e-19 Score=170.18 Aligned_cols=241 Identities=15% Similarity=0.233 Sum_probs=184.8
Q ss_pred eeEEEeecCCC-ccEEEEEecCCCeEEEeCCC---C---CeEEEeecccCCeEEEEECCCCC-eeEEeeCCCeEEEEECC
Q 018860 20 VDLFYSPITPD-GFFLISASKDSSPMLRNGET---G---DWIGTFEGHKGAVWSCCLDTNAL-RAASASADFSAKVWDAL 91 (349)
Q Consensus 20 ~~~~fs~~~~~-~~~l~s~s~d~~i~iw~~~~---~---~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vWd~~ 91 (349)
+.++|.+...+ .-.|+.|.-||.|.+|+... + +.+.+++-|++.|..+.|++.+. .||+|+.||.|.|||++
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence 47778764221 12588899999999998654 1 35778889999999999998766 99999999999999998
Q ss_pred CCCEEEEec---cCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCceeccCC--CCeEEEEEecCCCeEEEEee
Q 018860 92 TGDVLHSFE---HKHIVRACSFSED-THLLLTGGMEKILRIFDLNRPDAPPREVDRSP--GSVRTVAWLHSDQTILSTCT 165 (349)
Q Consensus 92 ~~~~~~~~~---~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~ 165 (349)
+-+.-.... ....|.+++|+.. .+.|++++.++.+.+||++..+. ...+..+. ..+..+.|+|++..-+++++
T Consensus 148 n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii~ls~~~~~~~~S~l~WhP~~aTql~~As 226 (1049)
T KOG0307|consen 148 KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-IIKLSDTPGRMHCSVLAWHPDHATQLLVAS 226 (1049)
T ss_pred CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-ccccccCCCccceeeeeeCCCCceeeeeec
Confidence 765444442 4567999999874 56788899999999999987533 33333332 35778999998876666655
Q ss_pred CCC---eEEEEECCCC-ceEEeecC-CCCeeEEEEcCCC-cEE-EEecCCeEEEEecCCceeeEEEcCCCc-eEEeeecC
Q 018860 166 DMG---GVRLWDVRSG-EIVQTLET-KSPVTSAEVSQDG-RYI-TTADGSTVKFWDANHFGLVKSYNMPCT-IESASLEP 237 (349)
Q Consensus 166 ~dg---~v~vwd~~~~-~~~~~~~~-~~~v~~~~~~~~~-~~l-~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~ 237 (349)
+|. .|.+||+|.- ..++.+.+ ...+.++.|++.+ ++| +++.|+.|.+|+.++++.+..+..... ...+.|+|
T Consensus 227 ~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 227 GDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCP 306 (1049)
T ss_pred CCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecC
Confidence 443 7899999864 45667754 4579999999876 554 556799999999999988877766433 45788999
Q ss_pred CCCCEEEEecCCCeEEEEeCCCCc
Q 018860 238 KYGNKFVAGGEDMWVRFFDFHTGN 261 (349)
Q Consensus 238 ~~~~~~~~~~~d~~i~v~d~~~~~ 261 (349)
.+...|++++.||.|.||.+....
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCcchhhhheeccceeeeeeecCC
Confidence 888899999999999999987644
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=2.8e-19 Score=148.16 Aligned_cols=200 Identities=26% Similarity=0.394 Sum_probs=146.0
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEe---ecccCCeEEEEECCCCCeeEEeeCCCeEEEE
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLDTNALRAASASADFSAKVW 88 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vW 88 (349)
++||...|++|.|.|..| ++|++||.|.++|+|++++..++..| +||.+.|.++.|+.++.+|+|||.|.++++|
T Consensus 131 ~~ghG~sINeik~~p~~~--qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W 208 (385)
T KOG1034|consen 131 YRGHGGSINEIKFHPDRP--QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLW 208 (385)
T ss_pred eeccCccchhhhcCCCCC--cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEE
Confidence 479999999999999544 59999999999999999999998777 5799999999999999999999999999999
Q ss_pred ECCCCCEEEE-------------------------e----ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc
Q 018860 89 DALTGDVLHS-------------------------F----EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR 139 (349)
Q Consensus 89 d~~~~~~~~~-------------------------~----~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~ 139 (349)
++...+.... | -|.+.|.|+.|- |++++|-|-++.|..|....-+....
T Consensus 209 ~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~ 286 (385)
T KOG1034|consen 209 RLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIH 286 (385)
T ss_pred ecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhh
Confidence 9874321110 0 144556666654 57899999999999998732222111
Q ss_pred eecc-------------CCCCeEEEEEe-cCCCeEEEEeeCCCeEEEEECCCCceE--Eeec---CCCCeeEEEEcCCCc
Q 018860 140 EVDR-------------SPGSVRTVAWL-HSDQTILSTCTDMGGVRLWDVRSGEIV--QTLE---TKSPVTSAEVSQDGR 200 (349)
Q Consensus 140 ~~~~-------------~~~~i~~~~~~-~~~~~~l~~~~~dg~v~vwd~~~~~~~--~~~~---~~~~v~~~~~~~~~~ 200 (349)
...+ ....+.-+.|. ..-+..|+.+...|.|.+||++...+. .++. ....|...+|+.|+.
T Consensus 287 ~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 287 NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred ccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 1111 11223333332 123456677888899999999876552 1222 245688899999998
Q ss_pred EEE-EecCCeEEEEec
Q 018860 201 YIT-TADGSTVKFWDA 215 (349)
Q Consensus 201 ~l~-~~~d~~i~iwd~ 215 (349)
+|+ ..+|++|--||.
T Consensus 367 ~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEEEEeCCCcEEEEEe
Confidence 865 578899998985
No 178
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=7.3e-18 Score=155.34 Aligned_cols=237 Identities=18% Similarity=0.174 Sum_probs=164.7
Q ss_pred CCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCC---CeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCE
Q 018860 40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASAD---FSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHL 116 (349)
Q Consensus 40 d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D---~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~ 116 (349)
+..|.+||..... .+.+..|...+...+|+||+++|+..+.+ ..|++||+.+++..............+|+|||+.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 4678899876544 56677888899999999999999988754 4699999988864333222333457899999998
Q ss_pred EEEEe-CCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC-CceEEeecCCCCeeEEE
Q 018860 117 LLTGG-MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS-GEIVQTLETKSPVTSAE 194 (349)
Q Consensus 117 l~s~~-~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~v~~~~ 194 (349)
|+.++ .++.+++|.++......+.+..+...+....|+|++..++.++..+|..++|++.. +.....+.... ....
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~ 339 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQ 339 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCcc
Confidence 88764 68877776543222223334445556778899998887777776678888887643 22222232222 3467
Q ss_pred EcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeC--CCCcEEEEecCCCcc
Q 018860 195 VSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDF--HTGNEIACNKGHHGP 272 (349)
Q Consensus 195 ~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~--~~~~~~~~~~~h~~~ 272 (349)
++|+++.++......+.+||+.++........ .......|+| +++++++++.++.+++|.+ .++.....+..|.+.
T Consensus 340 ~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~-~~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~ 417 (429)
T PRK01742 340 ISADGKTLVMINGDNVVKQDLTSGSTEVLSST-FLDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQ 417 (429)
T ss_pred CCCCCCEEEEEcCCCEEEEECCCCCeEEecCC-CCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCC
Confidence 99999987655444566699987765432221 2234567888 4889999888888888775 357777888888888
Q ss_pred eeEEEEccC
Q 018860 273 VHCVRFSPG 281 (349)
Q Consensus 273 i~~l~~sp~ 281 (349)
+...+|||-
T Consensus 418 ~~~p~wsp~ 426 (429)
T PRK01742 418 VKFPAWSPY 426 (429)
T ss_pred CCCcccCCC
Confidence 999999985
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=1.2e-17 Score=136.43 Aligned_cols=203 Identities=23% Similarity=0.351 Sum_probs=151.1
Q ss_pred ccCCeEEEEEEcCC-CCEEEEEeCC-------CeEEEEECCCCCCCC-----c---eec-cCCCCeEEEEEecCCCeEEE
Q 018860 100 EHKHIVRACSFSED-THLLLTGGME-------KILRIFDLNRPDAPP-----R---EVD-RSPGSVRTVAWLHSDQTILS 162 (349)
Q Consensus 100 ~~~~~v~~~~~s~~-~~~l~s~~~d-------~~i~lwd~~~~~~~~-----~---~~~-~~~~~i~~~~~~~~~~~~l~ 162 (349)
.|.+.|..++-+|- ...|+++-.+ ..+-+|.+..+.... . .+. .+.+.+.++.|.|+..++++
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 35677888888884 4455555432 236789986543221 1 111 34467999999997777654
Q ss_pred EeeCCCeEEEEECCCCce-EEeecC------CCCeeEEEEcC--CCcEEEEecCCeEEEEecCCceeeEEEcC--CCceE
Q 018860 163 TCTDMGGVRLWDVRSGEI-VQTLET------KSPVTSAEVSQ--DGRYITTADGSTVKFWDANHFGLVKSYNM--PCTIE 231 (349)
Q Consensus 163 ~~~~dg~v~vwd~~~~~~-~~~~~~------~~~v~~~~~~~--~~~~l~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~ 231 (349)
. ++..|.+|++..+.. ++.+.. ....++-+|+| ++..+++..|+++..||+|+......+.- ...+.
T Consensus 141 m--~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vr 218 (370)
T KOG1007|consen 141 M--DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVR 218 (370)
T ss_pred e--ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceee
Confidence 3 468999999987654 444432 23466777887 77888888899999999998877665543 23577
Q ss_pred EeeecCCCCCEEEEecCCCeEEEEeCCCCc-EEEEecCCCcceeEEEEccC-CCeEEEecCCCCEEEecCCCCCC
Q 018860 232 SASLEPKYGNKFVAGGEDMWVRFFDFHTGN-EIACNKGHHGPVHCVRFSPG-GESYASGSEDGTIRIWQTGPVTN 304 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~h~~~i~~l~~sp~-~~~l~sgs~Dg~v~vW~~~~~~~ 304 (349)
.+.|+|....++++|++|+.||+||++..+ .++.+.+|+-+|+++.|+|- .++++|||.|..|.+|....+..
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 889999888899999999999999998654 57889999999999999997 45778999999999998876644
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=4.1e-19 Score=163.06 Aligned_cols=238 Identities=21% Similarity=0.317 Sum_probs=179.1
Q ss_pred EEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 018860 54 IGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132 (349)
Q Consensus 54 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~ 132 (349)
++-+.||..+|+|+.|+..|.+++||+.|..+|||..+++.++.... |...++.++.+....++++++.|..||+|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 45567999999999999999999999999999999999999988875 88899999999999999999999999999986
Q ss_pred CCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEe------ecCCCCeeEEEEcCCC-cEEEEe
Q 018860 133 RPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQT------LETKSPVTSAEVSQDG-RYITTA 205 (349)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~------~~~~~~v~~~~~~~~~-~~l~~~ 205 (349)
.. .+...+.+|.+.|++++|+|-. +.++||++++||-+-. .... +.....+.++.+...+ .+++++
T Consensus 263 ~~-~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 263 DG-APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CC-chHHHHhccccceeeeccCccc-----cCCCCCceEecccccc-ccccCCCCCCcccccceeeeecccccccccccc
Confidence 53 3455678999999999999843 6778899999998811 1111 1112234444454444 455666
Q ss_pred cCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeE
Q 018860 206 DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESY 285 (349)
Q Consensus 206 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l 285 (349)
.++.-..|......... ..+.-+.....-+.+.+++-.+-.+++|++.++..+..+.+|...+..|.++|-+..+
T Consensus 336 ~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI 410 (1113)
T ss_pred CCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence 77777666543211000 0000011111123456677778889999999999999999999999999999987765
Q ss_pred E-EecCCCCEEEecCCCCC
Q 018860 286 A-SGSEDGTIRIWQTGPVT 303 (349)
Q Consensus 286 ~-sgs~Dg~v~vW~~~~~~ 303 (349)
+ +++.||+.-|||.-.+.
T Consensus 411 ~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred hhhccCCCceEeeecccCC
Confidence 4 89999999999985443
No 181
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.9e-17 Score=135.66 Aligned_cols=202 Identities=16% Similarity=0.249 Sum_probs=154.3
Q ss_pred EEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE
Q 018860 95 VLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWD 174 (349)
Q Consensus 95 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd 174 (349)
..+++.+.. ..++.|++.|.+||+|..||.+.+||+.+-. ..+.+.+|..+|++++|++++ ..|++++.|..|++||
T Consensus 17 l~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 17 LTHTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWD 93 (405)
T ss_pred hceeccCCc-cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEe
Confidence 345555655 7899999999999999999999999997644 567788899999999999654 5566788889999999
Q ss_pred CCCCceEEeecCCCCeeEEEEcCCC--cEEEEecCC--eEEEEecCCceeeEEEcC---CCceEEeeecCCCCCEEEEec
Q 018860 175 VRSGEIVQTLETKSPVTSAEVSQDG--RYITTADGS--TVKFWDANHFGLVKSYNM---PCTIESASLEPKYGNKFVAGG 247 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~d~--~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 247 (349)
+..|.+++.+...++|..+.|+|-. +.+++-.+. .+..++-....++..-.- +.......|.+ .++++++|.
T Consensus 94 l~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGt 172 (405)
T KOG1273|consen 94 LLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGT 172 (405)
T ss_pred ccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEec
Confidence 9999999999999999999999854 445554333 333333222222111000 00011112444 489999999
Q ss_pred CCCeEEEEeCCCCcEEEEecCCC-cceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 248 EDMWVRFFDFHTGNEIACNKGHH-GPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 248 ~d~~i~v~d~~~~~~~~~~~~h~-~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
..|.+.++|..+.+++..++--+ ..|..+.|+..|++|+.-+.|+.||.|+..
T Consensus 173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred CcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 99999999999998887776554 789999999999999999999999999875
No 182
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.8e-18 Score=147.68 Aligned_cols=288 Identities=19% Similarity=0.231 Sum_probs=215.8
Q ss_pred ceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEe-ecccCCeEEEEECC--CCCeeEEeeCCCeE
Q 018860 9 PLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDT--NALRAASASADFSA 85 (349)
Q Consensus 9 ~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~s~D~~i 85 (349)
...|.+|.+.|..|-|+. .|..|+|||.|..+.+|+...+..+..+ .||...|....|-| +.+.|++++.||.|
T Consensus 135 ~~kL~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhcccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 345689999999999985 8999999999999999998888776666 47999998888865 45679999999999
Q ss_pred EEEECC-CCCEE---EEeccCCeEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCcee--ccCCC---CeEEEEEec
Q 018860 86 KVWDAL-TGDVL---HSFEHKHIVRACSFSEDT-HLLLTGGMEKILRIFDLNRPDAPPREV--DRSPG---SVRTVAWLH 155 (349)
Q Consensus 86 ~vWd~~-~~~~~---~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~lwd~~~~~~~~~~~--~~~~~---~i~~~~~~~ 155 (349)
|+=.+. ++.+. +...|.+.|..++.-|+. ..|.|+|.|+.+.-+|+.......... ..... ...+++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 998864 34333 233588999999998864 568899999999999987543222111 11222 356788888
Q ss_pred CCCeEEEEeeCCCeEEEEECCCCc------eEEeec-------CCCCeeEEEEcCCC-cEEEEecCCeEEEEecCC--c-
Q 018860 156 SDQTILSTCTDMGGVRLWDVRSGE------IVQTLE-------TKSPVTSAEVSQDG-RYITTADGSTVKFWDANH--F- 218 (349)
Q Consensus 156 ~~~~~l~~~~~dg~v~vwd~~~~~------~~~~~~-------~~~~v~~~~~~~~~-~~l~~~~d~~i~iwd~~~--~- 218 (349)
...+.+++++.|..+++||.+.-. .+.++. ....|++++++.++ .+|++-.|-.|.++...- +
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 888889999999999999987522 122221 12358899999554 666666777888884321 1
Q ss_pred -----e----eeEE-EcC---CCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeE
Q 018860 219 -----G----LVKS-YNM---PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESY 285 (349)
Q Consensus 219 -----~----~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l 285 (349)
. ..+. |.. ...+-.+.|......++++|++-|.|.+|+-.+++.+..+++...-|+||--+|--..|
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 0 1111 111 12344566664457889999999999999999999988888776799999999999999
Q ss_pred EEecCCCCEEEecC
Q 018860 286 ASGSEDGTIRIWQT 299 (349)
Q Consensus 286 ~sgs~Dg~v~vW~~ 299 (349)
||.+-|.-||||-+
T Consensus 452 AsSGid~DVKIWTP 465 (559)
T KOG1334|consen 452 ASSGIDHDVKIWTP 465 (559)
T ss_pred hccCCccceeeecC
Confidence 99999999999976
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=2.1e-16 Score=150.96 Aligned_cols=256 Identities=18% Similarity=0.235 Sum_probs=180.6
Q ss_pred EeCCCCCeEEEeecccCCeEEEEECCCC-CeeEEeeCCCeEEEEECCCCC-------EEEEec-cCCeEEEEEEcCCCCE
Q 018860 46 RNGETGDWIGTFEGHKGAVWSCCLDTNA-LRAASASADFSAKVWDALTGD-------VLHSFE-HKHIVRACSFSEDTHL 116 (349)
Q Consensus 46 w~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~-------~~~~~~-~~~~v~~~~~s~~~~~ 116 (349)
|... |..+.++..|+..|..++.++.. .+++|||.||+||+||..+-. ...++. ....+.++.+.+.++.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 5543 67889999999999888887655 899999999999999975421 122232 4567899999999999
Q ss_pred EEEEeCCCeEEEEECCCCCCCC------ceec-cCCCCeEEE-EEecCCCe-EEEEeeCCCeEEEEECCCCceEEeec--
Q 018860 117 LLTGGMEKILRIFDLNRPDAPP------REVD-RSPGSVRTV-AWLHSDQT-ILSTCTDMGGVRLWDVRSGEIVQTLE-- 185 (349)
Q Consensus 117 l~s~~~d~~i~lwd~~~~~~~~------~~~~-~~~~~i~~~-~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~-- 185 (349)
+|.++.||.|++.+++...... +... ...+.+..+ +|....+. .++-+.+.+.|..||+++......++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999997532111 1111 122334444 44444444 66777777999999999876554443
Q ss_pred -CCCCeeEEEEcCCCcEEEEec-CCeEEEEecCCceeeEEEcCCC--ceEEeeecCCCC--CEEEEec--CCCeEEEEeC
Q 018860 186 -TKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYNMPC--TIESASLEPKYG--NKFVAGG--EDMWVRFFDF 257 (349)
Q Consensus 186 -~~~~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~--~d~~i~v~d~ 257 (349)
.++.+++++.+|.+.+++.|. .|.+.+||+|=..++..+.++. .+..+..+|... ...++++ ..+.|.+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 356799999999999987765 7899999999888888877764 455555555544 5555544 5789999999
Q ss_pred CCCcEEEEecCC--------Cc-----------ceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 258 HTGNEIACNKGH--------HG-----------PVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 258 ~~~~~~~~~~~h--------~~-----------~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
.+|.....+... .. ......+...+.++.+|+.|..|+.||...+
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 988765544211 11 1112233334567889999999999997644
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=4.9e-16 Score=127.18 Aligned_cols=274 Identities=18% Similarity=0.239 Sum_probs=190.3
Q ss_pred ceeeEEEeecCCCccEEEEEecC----CCeEEE--eCCCCCeEEEe-ecccCCeEEEEECCCCC-----eeEEeeCCCeE
Q 018860 18 PVVDLFYSPITPDGFFLISASKD----SSPMLR--NGETGDWIGTF-EGHKGAVWSCCLDTNAL-----RAASASADFSA 85 (349)
Q Consensus 18 ~v~~~~fs~~~~~~~~l~s~s~d----~~i~iw--~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-----~l~s~s~D~~i 85 (349)
++.++.||.......+|+.||.- +.+.|. +.++++.+..- -.|.-+++.+-|.|+.. .|||+| | .+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-C-eE
Confidence 45677787553345678888753 334444 33445443211 24888999999988763 566655 3 69
Q ss_pred EEEECCCC--CEE--E------EeccCCeEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC--CCCceeccCCCCeEEEE
Q 018860 86 KVWDALTG--DVL--H------SFEHKHIVRACSFSE-DTHLLLTGGMEKILRIFDLNRPD--APPREVDRSPGSVRTVA 152 (349)
Q Consensus 86 ~vWd~~~~--~~~--~------~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~~~~i~~~~ 152 (349)
|+|.+... +.. . .-++..++++..|+. +-++|.+++.|-+..+||+..+. .....+..|.++|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 99998732 211 1 112456788888876 66899999999999999998742 23456788999999999
Q ss_pred EecCCCeEEEEeeCCCeEEEEECCCCceEEee-cC---CCCeeEEEEcCCC-cEEEE--ecCCeEEEEecCCcee-e-EE
Q 018860 153 WLHSDQTILSTCTDMGGVRLWDVRSGEIVQTL-ET---KSPVTSAEVSQDG-RYITT--ADGSTVKFWDANHFGL-V-KS 223 (349)
Q Consensus 153 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~---~~~v~~~~~~~~~-~~l~~--~~d~~i~iwd~~~~~~-~-~~ 223 (349)
|...+..+|++++.||.||++|+|....-..+ +. ..+...++++++. +++++ .+...|.+.|+|-... + +.
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 99888889999999999999999976532222 22 3467778888765 45544 3467899999986542 2 22
Q ss_pred EcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcE------EEEecCCCcceeEEEEccC-CCeEEEecCCCCEE
Q 018860 224 YNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNE------IACNKGHHGPVHCVRFSPG-GESYASGSEDGTIR 295 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~h~~~i~~l~~sp~-~~~l~sgs~Dg~v~ 295 (349)
-.+...+..++|.|....++++||+|..+-+||+.+.-. +..+. -.+.|+.+.|+|. ..+++.+. ++++.
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kkle 360 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLE 360 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeee
Confidence 345567889999999999999999999999999975332 11222 4578999999975 45665444 44443
No 185
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=2.4e-16 Score=130.78 Aligned_cols=228 Identities=18% Similarity=0.310 Sum_probs=166.2
Q ss_pred CceeeEEEee----cCCCccEEEEEecCCCeEEEeCCCCCeEEEeec--ccCC---eEEEEECCCCCeeEEeeCCCeEEE
Q 018860 17 RPVVDLFYSP----ITPDGFFLISASKDSSPMLRNGETGDWIGTFEG--HKGA---VWSCCLDTNALRAASASADFSAKV 87 (349)
Q Consensus 17 ~~v~~~~fs~----~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--h~~~---v~~~~~~~~~~~l~s~s~D~~i~v 87 (349)
+.|++..|.| ..|+-.++++.+++.-|.+||.-+|++..++++ |.+. ..+++|+|||.+|+ +|...+||+
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aGykrcirv 183 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AGYKRCIRV 183 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-ecccceEEE
Confidence 4677777653 356778999999999999999999998888875 5544 36899999999887 466789999
Q ss_pred EEC-CCCCE---EEEec-----cCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCC
Q 018860 88 WDA-LTGDV---LHSFE-----HKHIVRACSFSED-THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSD 157 (349)
Q Consensus 88 Wd~-~~~~~---~~~~~-----~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 157 (349)
+|+ +.|.. -.++. ..+.+.+++|+|. ...++.|+....+-||.-.. ..+...+.+|.+.|+-+.|.+.+
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCc
Confidence 998 45532 11222 3567899999995 55889999888888877543 34455667899999999999999
Q ss_pred CeEEEEeeCCCeEEEEECCCC-ceEEeecCC----CCeeEEEEcCCCcEEEEe-cCCeEEEEecCCc-eeeEEE-cCCCc
Q 018860 158 QTILSTCTDMGGVRLWDVRSG-EIVQTLETK----SPVTSAEVSQDGRYITTA-DGSTVKFWDANHF-GLVKSY-NMPCT 229 (349)
Q Consensus 158 ~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~----~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-~~~~~~-~~~~~ 229 (349)
..+++++-.+-.|..||+|.. .++..+..+ +.-.-....|.+++|+++ .+|.|++||+.+. ..+..+ .....
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 988887777789999999864 444444322 222234567889999887 5999999999873 333333 23345
Q ss_pred eEEeeecCCCCCEEEEec
Q 018860 230 IESASLEPKYGNKFVAGG 247 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~ 247 (349)
+..++++|. -.++++++
T Consensus 343 vNgvslnP~-mpilatss 359 (406)
T KOG2919|consen 343 VNGVSLNPI-MPILATSS 359 (406)
T ss_pred ccceecCcc-cceeeecc
Confidence 667777775 44555544
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=1e-15 Score=146.25 Aligned_cols=289 Identities=18% Similarity=0.163 Sum_probs=194.1
Q ss_pred cccccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC-------CeEEEeecccCCeEEEEECCCCCee
Q 018860 4 KKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDTNALRA 76 (349)
Q Consensus 4 ~~~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l 76 (349)
|.+..+| ++|+..|..++-++ +++.+++|||.||++++|+...- ....++..-...+.++.+-..+..+
T Consensus 1038 G~lVAhL--~Ehs~~v~k~a~s~--~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1038 GILVAHL--HEHSSAVIKLAVSS--EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred ceEeehh--hhccccccceeecC--CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 5555554 67999999888776 45679999999999999986421 1223343345678889998999999
Q ss_pred EEeeCCCeEEEEECCCC--CE-----EEEec---cCCeEEEEEEcC-CCC-EEEEEeCCCeEEEEECCCCCCCC-ceecc
Q 018860 77 ASASADFSAKVWDALTG--DV-----LHSFE---HKHIVRACSFSE-DTH-LLLTGGMEKILRIFDLNRPDAPP-REVDR 143 (349)
Q Consensus 77 ~s~s~D~~i~vWd~~~~--~~-----~~~~~---~~~~v~~~~~s~-~~~-~l~s~~~d~~i~lwd~~~~~~~~-~~~~~ 143 (349)
|.++.||.|++.+++-. .. .+... ....|..-+|.. .+. .++-+..-+.|..||+....... .....
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998652 11 11111 123455556644 233 67777788889999987543211 12333
Q ss_pred CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC--CCCeeEEEEcCC---CcEE-EEe--cCCeEEEEec
Q 018860 144 SPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET--KSPVTSAEVSQD---GRYI-TTA--DGSTVKFWDA 215 (349)
Q Consensus 144 ~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~---~~~l-~~~--~d~~i~iwd~ 215 (349)
..+.+++++..|.+. +++.|+..|.+-+||+|=+.++....+ ..+++.+..+|- ..+. +++ ..+.|.+|++
T Consensus 1194 ~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred cccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 457899998876555 777788889999999998888877655 356777766653 2333 333 3578999999
Q ss_pred CCceeeEEEcCC-----------Cc-------e--EEeeecCCCCCEEEEecCCCeEEEEeCCCCcEE------------
Q 018860 216 NHFGLVKSYNMP-----------CT-------I--ESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEI------------ 263 (349)
Q Consensus 216 ~~~~~~~~~~~~-----------~~-------~--~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------------ 263 (349)
.++.+...+-.. .. + ...++ +..+..+++|+.|..||.||....+..
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~ 1351 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV-CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYS 1351 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeec-ccCCceeeecCCccceeeccCCCcccccccccCcccccc
Confidence 887555444322 10 0 01111 123567889999999999996431100
Q ss_pred ------------------------------------EE--------ecCCCcceeEEEEccC-CCeEEEecCCCCEEEec
Q 018860 264 ------------------------------------AC--------NKGHHGPVHCVRFSPG-GESYASGSEDGTIRIWQ 298 (349)
Q Consensus 264 ------------------------------------~~--------~~~h~~~i~~l~~sp~-~~~l~sgs~Dg~v~vW~ 298 (349)
.. ...|..+|+++++-.. ..+|++++.||.|+||.
T Consensus 1352 ~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1352 TNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 0257889999987654 45789999999999994
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.1e-15 Score=136.91 Aligned_cols=280 Identities=17% Similarity=0.210 Sum_probs=190.7
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCC---CeeEEeeCCCeEEEE
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNA---LRAASASADFSAKVW 88 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~D~~i~vW 88 (349)
+.|....-..-.||+ |+++|+.. .+..+.||...++++++.+++|..++..+.+.+.. .++.+++.||.|++|
T Consensus 12 lgg~n~~~~~avfSn---D~k~l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSN---DAKFLFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceeccccccc---CCcEEEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 555444434456776 89988855 56889999999999999999999999999997754 478899999999999
Q ss_pred ECCCCCEEEEeccCCeEEEEEEcC----CCCEEEEEeCCCe------------EEEEECCCCCCCCce-eccCCCCeEEE
Q 018860 89 DALTGDVLHSFEHKHIVRACSFSE----DTHLLLTGGMEKI------------LRIFDLNRPDAPPRE-VDRSPGSVRTV 151 (349)
Q Consensus 89 d~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~d~~------------i~lwd~~~~~~~~~~-~~~~~~~i~~~ 151 (349)
|-..+..++++...-.+.++.+.| ....+..+..|.. ++-+.+.+....... ...+. ....+
T Consensus 88 d~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~I 166 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKSI 166 (792)
T ss_pred cCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCccE
Confidence 999999999987555555554432 1111112222221 111222111111111 11111 13445
Q ss_pred EEecCCCeEEEEeeCCCeEEEEECCCCceE-----EeecCCCCeeEEEEcCCCcEEEEec-CCeEEEEecCC-----cee
Q 018860 152 AWLHSDQTILSTCTDMGGVRLWDVRSGEIV-----QTLETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANH-----FGL 220 (349)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~-----~~~ 220 (349)
.+.+. +.+....-+ ..+.+|+...+... ....|..++++.+++|+++++++++ ||.|.+|.--. ..+
T Consensus 167 ~~~~~-ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~ 244 (792)
T KOG1963|consen 167 VDNNS-GEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC 244 (792)
T ss_pred EEcCC-ceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc
Confidence 55543 334434433 57888988775411 0112333578999999999998876 89999996432 223
Q ss_pred eEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 221 VKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
...+-+...+..++|+++ +.++++||.++.+.+|.+.+++ .+.+.--.++|..+.+|||+.+.+..-+|..|.+-...
T Consensus 245 t~lHWH~~~V~~L~fS~~-G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSD-GAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred eEEEecccccceeEEecC-CceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 333334556788888874 8999999999999999999988 44455567899999999999999989999999998763
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=7.8e-15 Score=117.37 Aligned_cols=195 Identities=16% Similarity=0.174 Sum_probs=142.9
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC----CeEE----Eeeccc-----CCeEEEEECCCCCeeEE
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG----DWIG----TFEGHK-----GAVWSCCLDTNALRAAS 78 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~----~~~~----~~~~h~-----~~v~~~~~~~~~~~l~s 78 (349)
+.+|.+||+.++|. | .+|++|+ ||.++-|..... .+.. ...-|. -.|.++..+|....++.
T Consensus 58 eqahdgpiy~~~f~----d-~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~ 131 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH----D-DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF 131 (325)
T ss_pred ccccCCCeeeeeee----h-hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE
Confidence 38999999999998 2 4777775 599988863211 1111 112233 34789999998888999
Q ss_pred eeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc--------eeccCC-CCe
Q 018860 79 ASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR--------EVDRSP-GSV 148 (349)
Q Consensus 79 ~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~--------~~~~~~-~~i 148 (349)
++.|+.+.-||+++|+..+.++ |.+.|.++......-.++||+.||++|+||+.+.+.... .+.++- ..|
T Consensus 132 AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 132 AGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred ecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence 9999999999999999999986 899999999865556799999999999999987653211 011111 224
Q ss_pred EEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCC
Q 018860 149 RTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANH 217 (349)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~ 217 (349)
-+++- +...+++|+. ..+-+|.+++.++...++...++..+.|..+ ..++++..+.+.-|.++.
T Consensus 212 gala~---~edWlvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 212 GALAV---NEDWLVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred EEEec---cCceEEecCC-CceeEEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeeeeecc
Confidence 45442 3344544443 5799999999999999999888998888754 556667778888888754
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=4e-16 Score=140.61 Aligned_cols=236 Identities=17% Similarity=0.244 Sum_probs=168.4
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEee-cccCCeEEEEECCCCCeeEEeeCCCeEEEEE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDTNALRAASASADFSAKVWD 89 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd 89 (349)
.+.||++.|+|++|+. ||+.++||++|..+.+|... .-..++ .|.+.|.|+.|.|-...|+||+... .-+|.
T Consensus 48 tLKgHKDtVycVAys~---dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS 120 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAK---DGKRFASGSADKSVIIWTSK---LEGILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWS 120 (1081)
T ss_pred ccccccceEEEEEEcc---CCceeccCCCceeEEEeccc---ccceeeeccCCeeeEeecCchHHHhhhcchhh-ccccC
Confidence 3479999999999995 99999999999999999854 233343 5999999999999999999999643 45787
Q ss_pred CCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCcee---ccCCCCeEEEEEecCCC----eEEE
Q 018860 90 ALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREV---DRSPGSVRTVAWLHSDQ----TILS 162 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~----~~l~ 162 (349)
.... .+...+....+.+++|..||.+++-|-.+|+|.+-+-. +.+.... .+...+|.+++|+|..+ .+++
T Consensus 121 ~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 121 PEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 6432 12222233467899999999999999999999887643 2222222 23567899999998653 3555
Q ss_pred EeeCCCeEEEEECCCCceEE-eecCCCCeeEEEEcCCCcEE-EEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCC
Q 018860 163 TCTDMGGVRLWDVRSGEIVQ-TLETKSPVTSAEVSQDGRYI-TTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYG 240 (349)
Q Consensus 163 ~~~~dg~v~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
......++-++.+. |+.+- .-..+-.-.++.+.++|.++ .++.|+.+++|.-..-.+-..-....=+..+...|. +
T Consensus 198 V~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PN-s 275 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPN-S 275 (1081)
T ss_pred EEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccC-C
Confidence 55565667666653 33332 22223345678899999886 556789999997554333332333444567778885 8
Q ss_pred CEEEEecCCCeEEEEeCC
Q 018860 241 NKFVAGGEDMWVRFFDFH 258 (349)
Q Consensus 241 ~~~~~~~~d~~i~v~d~~ 258 (349)
++++.|..||+|..|++-
T Consensus 276 Q~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ceEEEEEccCeeehhhhH
Confidence 899999999999999863
No 190
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=8.7e-16 Score=128.29 Aligned_cols=253 Identities=17% Similarity=0.204 Sum_probs=168.0
Q ss_pred CccccccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCe--EEEeeccc-CCeEEEEECCCCCeeEE
Q 018860 2 DKKKIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDW--IGTFEGHK-GAVWSCCLDTNALRAAS 78 (349)
Q Consensus 2 ~~~~~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~--~~~~~~h~-~~v~~~~~~~~~~~l~s 78 (349)
||++..+.=+|.||...++.+.|...+ ..+-+.||+.||+|++||+.+... ...+..|+ .+..|++....++.++.
T Consensus 56 d~~tg~~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~ 134 (376)
T KOG1188|consen 56 DKGTGQLLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIAC 134 (376)
T ss_pred eccchhhhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEe
Confidence 455555666788999999999998753 355799999999999999887643 44556666 45566666656777776
Q ss_pred ee----CCCeEEEEECCCCCE-EEEec--cCCeEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCC--CceeccCCCCe
Q 018860 79 AS----ADFSAKVWDALTGDV-LHSFE--HKHIVRACSFSE-DTHLLLTGGMEKILRIFDLNRPDAP--PREVDRSPGSV 148 (349)
Q Consensus 79 ~s----~D~~i~vWd~~~~~~-~~~~~--~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~~~--~~~~~~~~~~i 148 (349)
|. .|-.|.+||++..+. +..+. |..-|+++.|+| +-++|+|||-||-+.+||+...... ......+...|
T Consensus 135 GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI 214 (376)
T KOG1188|consen 135 GTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSI 214 (376)
T ss_pred ccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhccccee
Confidence 64 367799999987765 55553 888999999999 5689999999999999999755321 22334456678
Q ss_pred EEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCC-------------CeeEEEEcCC-C-cEEEEec-CCeEEE
Q 018860 149 RTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKS-------------PVTSAEVSQD-G-RYITTAD-GSTVKF 212 (349)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-------------~v~~~~~~~~-~-~~l~~~~-d~~i~i 212 (349)
..+.|+.+.-.-+.+-+-.++..+|+++.+.+...++... .+.. ..+|. . .+++++. -++..+
T Consensus 215 ~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~ 293 (376)
T KOG1188|consen 215 HLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTI 293 (376)
T ss_pred eeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeE
Confidence 9999997764345555566899999999887654443220 0111 12232 2 2334433 344444
Q ss_pred EecC---Cceee---EEEcC-CC-ceEEeeecCCCCCEEEEecCCCeEEEEeC
Q 018860 213 WDAN---HFGLV---KSYNM-PC-TIESASLEPKYGNKFVAGGEDMWVRFFDF 257 (349)
Q Consensus 213 wd~~---~~~~~---~~~~~-~~-~~~~~~~~~~~~~~~~~~~~d~~i~v~d~ 257 (349)
+-+. +.... ..++. .. .+..+.|. ..+..+++||.||.+.+|..
T Consensus 294 ~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~-~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 294 FPLVDTSSGSLLTEPAILQGGHEEIVRDILFD-VKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred EEeeecccccccCccccccCCcHHHHHHHhhh-cccceeeccCCCceEEEEec
Confidence 4332 22211 11111 11 13344444 45788999999999999985
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.9e-15 Score=139.43 Aligned_cols=242 Identities=16% Similarity=0.111 Sum_probs=169.4
Q ss_pred CCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCe--EE----EeecccCCeEEEEECCCC--CeeEEeeCCCeEE
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDW--IG----TFEGHKGAVWSCCLDTNA--LRAASASADFSAK 86 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~--~~----~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~ 86 (349)
-..+|+|+.|+|.+|+ +|+.|+.+|.+.+||...+.. .. ....|+.+|+.+.|..+. .-++|+|.||.|.
T Consensus 241 ~~s~v~~~~f~p~~p~--ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPN--LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred cCCceeEEEeccCCcc--eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 3567899999997665 899999999999999876543 22 223589999999996544 4499999999999
Q ss_pred EEECCCCCE------EEEec-------cCCeEEEEEEcC-CCCEEEEEeCCCeEEEEE---CCCCC----CCCceeccCC
Q 018860 87 VWDALTGDV------LHSFE-------HKHIVRACSFSE-DTHLLLTGGMEKILRIFD---LNRPD----APPREVDRSP 145 (349)
Q Consensus 87 vWd~~~~~~------~~~~~-------~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd---~~~~~----~~~~~~~~~~ 145 (349)
.|+++.-.. ..... ....+++++|.+ +-+.++.|+.+|.|..-. ..... ........|.
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 998654321 11111 223578899987 456788899999886622 21111 1122345678
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCeEEEEECC-CCceEEeecCC-CCeeEEEEcCCCcEE-EEe-cCCeEEEEecCCc--e
Q 018860 146 GSVRTVAWLHSDQTILSTCTDMGGVRLWDVR-SGEIVQTLETK-SPVTSAEVSQDGRYI-TTA-DGSTVKFWDANHF--G 219 (349)
Q Consensus 146 ~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~--~ 219 (349)
+++.++.++|-...++++++ |-+|++|... ...++..+... ..+.+++|||..-.+ ++. .+|.|.+||+... .
T Consensus 399 g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~ 477 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE 477 (555)
T ss_pred cceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence 89999999998888888888 5899999987 55555555543 349999999987443 344 4899999999753 3
Q ss_pred eeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCC
Q 018860 220 LVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHT 259 (349)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 259 (349)
++.+......+....+.+..++.+++|...|.+++|++..
T Consensus 478 Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 478 PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3333322233333333333588999999999999999853
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=8.4e-16 Score=125.78 Aligned_cols=198 Identities=18% Similarity=0.261 Sum_probs=155.4
Q ss_pred ccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC---CeEEEeecccCCeEEEEECCCC-CeeEEeeCCCeEEEE
Q 018860 13 HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDTNA-LRAASASADFSAKVW 88 (349)
Q Consensus 13 ~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vW 88 (349)
+.|-.|+++..|+...|. +|.+.|-|-+..||+++++ .....+=+|...|..++|...+ ..+||.|.||+||+|
T Consensus 147 s~~~aPlTSFDWne~dp~--~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPN--LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMF 224 (364)
T ss_pred cccCCcccccccccCCcc--eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEE
Confidence 467788999999887665 9999999999999999876 2466777899999999999854 368899999999999
Q ss_pred ECCCCCEEEEe-cc---CCeEEEEEEcC-CCCEEEEEeC-CCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEE
Q 018860 89 DALTGDVLHSF-EH---KHIVRACSFSE-DTHLLLTGGM-EKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILS 162 (349)
Q Consensus 89 d~~~~~~~~~~-~~---~~~v~~~~~s~-~~~~l~s~~~-d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 162 (349)
|++..+....+ +. ..+..-++|++ |-+++|+-.. ...|.+.|++.+..+...+.+|.+.|+.++|.|.....++
T Consensus 225 DLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hic 304 (364)
T KOG0290|consen 225 DLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHIC 304 (364)
T ss_pred EecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceee
Confidence 99876543332 22 23556677776 5677877554 4568999999999888899999999999999999999999
Q ss_pred EeeCCCeEEEEECCCCce------EEeecCCCCeeEEEEcCC-CcEEEEecCCeEEE
Q 018860 163 TCTDMGGVRLWDVRSGEI------VQTLETKSPVTSAEVSQD-GRYITTADGSTVKF 212 (349)
Q Consensus 163 ~~~~dg~v~vwd~~~~~~------~~~~~~~~~v~~~~~~~~-~~~l~~~~d~~i~i 212 (349)
+|++|.++.+||+.+.-. +........|+.+.|++. ..+++++.+.++.+
T Consensus 305 taGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 305 TAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred ecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeE
Confidence 999999999999975321 222334567899999864 56777776665544
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=5e-16 Score=133.09 Aligned_cols=199 Identities=21% Similarity=0.274 Sum_probs=132.6
Q ss_pred EEEEECCCCCeeEEeeCCCeEEEEECCCCCEE-EEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCcee-c
Q 018860 65 WSCCLDTNALRAASASADFSAKVWDALTGDVL-HSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREV-D 142 (349)
Q Consensus 65 ~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~-~ 142 (349)
.+++|+.++..|++++.||++|||+......+ ...+|...|..+.|+|||++|++-+.| ..++|++++.....+.. .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 57899999999999999999999996655443 445688999999999999999999999 89999998763322222 1
Q ss_pred cCCCCeEEEEEecCC---CeEEEE-eeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCc
Q 018860 143 RSPGSVRTVAWLHSD---QTILST-CTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHF 218 (349)
Q Consensus 143 ~~~~~i~~~~~~~~~---~~~l~~-~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~ 218 (349)
..+..+..+.|...+ ..++++ -..-+.|+.||+. +|+-.+.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~-----------------------------------~w~~~~~ 271 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS-----------------------------------LWSGSNF 271 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEee-----------------------------------eeccccc
Confidence 122234455665432 122222 1222334444332 2222110
Q ss_pred ee-eEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEe-cCCCcceeEEEEccCCCeEEEecCCCCEEE
Q 018860 219 GL-VKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACN-KGHHGPVHCVRFSPGGESYASGSEDGTIRI 296 (349)
Q Consensus 219 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~v 296 (349)
-. .+.......+.+++.+. ++++++.|+.||.|-+++..+.+.++.. +.|...|+.+.|+|+.+++++.|.|....|
T Consensus 272 l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 272 LRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred cchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 00 01111112345555554 4777777888888888887777665543 579999999999999999999999999988
Q ss_pred ecCC
Q 018860 297 WQTG 300 (349)
Q Consensus 297 W~~~ 300 (349)
-.+.
T Consensus 351 ~~l~ 354 (398)
T KOG0771|consen 351 TKLA 354 (398)
T ss_pred EEEe
Confidence 8653
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=8.7e-14 Score=124.28 Aligned_cols=237 Identities=17% Similarity=0.198 Sum_probs=154.7
Q ss_pred CceeeEEEeecCCCccEEEEEe-cCCCeEEEeCC-CCCe--EEEeecccCCeEEEEECCCCCeeEEeeC-CCeEEEEECC
Q 018860 17 RPVVDLFYSPITPDGFFLISAS-KDSSPMLRNGE-TGDW--IGTFEGHKGAVWSCCLDTNALRAASASA-DFSAKVWDAL 91 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s-~d~~i~iw~~~-~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~-D~~i~vWd~~ 91 (349)
+.+..++++| ++++|++++ .++.+.+|+.. ++.+ +.... .......++|+|++++|++++. ++.|.+|++.
T Consensus 35 ~~~~~l~~sp---d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 35 GQVQPMVISP---DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCCccEEECC---CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 4456778886 888886664 47788889875 3433 22222 2234567999999998888774 8899999986
Q ss_pred C-C---CEEEEeccCCeEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCCCC----cee-ccCCCCeEEEEEecCCCeEE
Q 018860 92 T-G---DVLHSFEHKHIVRACSFSEDTHLLLTGG-MEKILRIFDLNRPDAPP----REV-DRSPGSVRTVAWLHSDQTIL 161 (349)
Q Consensus 92 ~-~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~lwd~~~~~~~~----~~~-~~~~~~i~~~~~~~~~~~~l 161 (349)
+ + +.+..+.+......++++|+++++++++ .++.|.+||++...... ... .........+.|+|++..++
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly 190 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY 190 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence 4 3 2333333444567789999999886554 67999999997533211 000 11123456788888777777
Q ss_pred EEeeCCCeEEEEECCC--Cc--eEEeecC-------CCCeeEEEEcCCCcEEEEec--CCeEEEEecCCce----eeEEE
Q 018860 162 STCTDMGGVRLWDVRS--GE--IVQTLET-------KSPVTSAEVSQDGRYITTAD--GSTVKFWDANHFG----LVKSY 224 (349)
Q Consensus 162 ~~~~~dg~v~vwd~~~--~~--~~~~~~~-------~~~v~~~~~~~~~~~l~~~~--d~~i~iwd~~~~~----~~~~~ 224 (349)
++...+++|.+||+.. ++ .++.+.. ......+.++|+++++.++. ++.|.+|++.... .+...
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~ 270 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ 270 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE
Confidence 7666679999999973 33 3333321 11123578999999887653 6899999985432 23333
Q ss_pred cCCCceEEeeecCCCCCEEEEec-CCCeEEEEeCC
Q 018860 225 NMPCTIESASLEPKYGNKFVAGG-EDMWVRFFDFH 258 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~v~d~~ 258 (349)
.....+..+.++|+ +++++++. .+++|.+|++.
T Consensus 271 ~~~~~p~~~~~~~d-g~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 271 PTETQPRGFNIDHS-GKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eccccCCceEECCC-CCEEEEEEccCCcEEEEEEc
Confidence 32233456778875 66666554 58999999874
No 195
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.70 E-value=4.8e-14 Score=126.39 Aligned_cols=277 Identities=15% Similarity=0.150 Sum_probs=176.8
Q ss_pred eeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEee-CCCeEEEEECCCCCEEEE
Q 018860 20 VDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASAS-ADFSAKVWDALTGDVLHS 98 (349)
Q Consensus 20 ~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~~~~~~ 98 (349)
..+.|+| ||+++.++++|+.+.++|+.+.+.+++++.-.. -..+++++||++++++. .++.+.++|..+.+.++.
T Consensus 40 ~~~~~s~---Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 40 AGLKFSP---DGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT 115 (369)
T ss_dssp EEEE-TT----SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred eEEEecC---CCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceee
Confidence 3466775 999999999999999999999999999986544 47799999999988765 699999999999998887
Q ss_pred ecc--------CCeEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 018860 99 FEH--------KHIVRACSFSEDTHLLLTGGM-EKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG 169 (349)
Q Consensus 99 ~~~--------~~~v~~~~~s~~~~~l~s~~~-d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 169 (349)
+.. ...+.++-.+|....++..-. -+.|-+-|+...+.................|.|++.+++++....+.
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccce
Confidence 752 235677777888875555544 47676667655432222222233456677888888888887777789
Q ss_pred EEEEECCCCceEEeecCC-----CCeeEEEEcCC----------CcEE-EEecCCeEEEEecCCceeeEEEcCCCceEEe
Q 018860 170 VRLWDVRSGEIVQTLETK-----SPVTSAEVSQD----------GRYI-TTADGSTVKFWDANHFGLVKSYNMPCTIESA 233 (349)
Q Consensus 170 v~vwd~~~~~~~~~~~~~-----~~v~~~~~~~~----------~~~l-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 233 (349)
|-++|.++++.+..+... .+...+ .+|. +... ..-..+.+.+||..+++.++.+.......-+
T Consensus 196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi 274 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFI 274 (369)
T ss_dssp EEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--E
T ss_pred eEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCccee
Confidence 999999999887766432 122211 2222 1222 2222345667899999999988876655555
Q ss_pred eecCCCCCEEEEe----cCCCeEEEEeCCCCcEEEEecCC-CcceeEEEEccCCCeEEEe--cCCCCEEEecCCCC
Q 018860 234 SLEPKYGNKFVAG----GEDMWVRFFDFHTGNEIACNKGH-HGPVHCVRFSPGGESYASG--SEDGTIRIWQTGPV 302 (349)
Q Consensus 234 ~~~~~~~~~~~~~----~~d~~i~v~d~~~~~~~~~~~~h-~~~i~~l~~sp~~~~l~sg--s~Dg~v~vW~~~~~ 302 (349)
..+|+ ++++.+. ...++|.++|..+.+....+... ...+..+.|+++|+.+... ..++.|.++|....
T Consensus 275 ~thP~-s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 275 KTHPD-SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp E--TT--SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred ecCCC-CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 66775 6777766 45689999999998877766422 2358899999999976533 33447999997654
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=2.1e-14 Score=119.14 Aligned_cols=201 Identities=15% Similarity=0.191 Sum_probs=155.6
Q ss_pred CCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC---CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECC
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDAL 91 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~ 91 (349)
-.++|+|-+|++ |++.+|.+.....+.||..... +..++++.|...|++++|++...+|+||+.|..-.||...
T Consensus 9 ~~~pitchAwn~---drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNS---DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecC---CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 457899999996 8999999999989999975544 5688999999999999999999999999999999999984
Q ss_pred -CCC---EEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC---CceeccCCCCeEEEEEecCCCeEEEEe
Q 018860 92 -TGD---VLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAP---PREVDRSPGSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 92 -~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~ 164 (349)
.++ .+-.++++..++++.|+|.++.+++||.-+.|.+|=+...... ...-.++...|.++.|+|+ +.++++|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn-nVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN-NVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC-cceeccc
Confidence 443 3344568889999999999999999999999999987644321 1223345567899999865 5567777
Q ss_pred eCCCeEEEEECCC------------------CceEEee-cCCCCeeEEEEcCCCcEEE-EecCCeEEEEecCCce
Q 018860 165 TDMGGVRLWDVRS------------------GEIVQTL-ETKSPVTSAEVSQDGRYIT-TADGSTVKFWDANHFG 219 (349)
Q Consensus 165 ~~dg~v~vwd~~~------------------~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~d~~i~iwd~~~~~ 219 (349)
+.|+..||+..-- |+++..+ ...+.+..+.|+|+|..|+ .+.|.++.+=|.....
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 7789999985311 1112222 2345688999999998775 5678999888876553
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=8.7e-15 Score=138.19 Aligned_cols=236 Identities=22% Similarity=0.311 Sum_probs=165.2
Q ss_pred eEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEecc----CCeEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCC-C
Q 018860 64 VWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEH----KHIVRACSFSE--DTHLLLTGGMEKILRIFDLNRPD-A 136 (349)
Q Consensus 64 v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~----~~~v~~~~~s~--~~~~l~s~~~d~~i~lwd~~~~~-~ 136 (349)
-..+.|+|=...++++...-.|+|||-+.++.+..|.. ...|+.+.+-. |..++++|+.||.||+|+--... .
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 34567777666788888778899999999999888863 34588888743 56789999999999999843222 1
Q ss_pred CCce----------eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCC--CeeEEEEcC-CCcEEE
Q 018860 137 PPRE----------VDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKS--PVTSAEVSQ-DGRYIT 203 (349)
Q Consensus 137 ~~~~----------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~v~~~~~~~-~~~~l~ 203 (349)
..+. +.+..+.-.-+.|....+.++++|. -..|||||......++.++..+ .++++.-+. .|..++
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 1111 1111122244678878888887765 4899999999888888887654 344443332 345655
Q ss_pred Ee-cCCeEEEEecCCce---eeEE---EcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEE--EecCCC--c-
Q 018860 204 TA-DGSTVKFWDANHFG---LVKS---YNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIA--CNKGHH--G- 271 (349)
Q Consensus 204 ~~-~d~~i~iwd~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~~h~--~- 271 (349)
++ .||.|++||.+... .+.. ++....+..+.+.+..-..+++|+.||.|++||++...... ....|- +
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc
Confidence 54 69999999987532 2222 22233366777776434579999999999999998743322 222332 3
Q ss_pred ceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 272 PVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 272 ~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
..+++..++..+.+|||+. +.|+||++..
T Consensus 1306 ~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred cceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence 5899999999999999999 9999999864
No 198
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.3e-16 Score=138.57 Aligned_cols=207 Identities=20% Similarity=0.253 Sum_probs=140.4
Q ss_pred cceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCC-------CC---CeEEEeecccCCeEEEEECCCCCeeE
Q 018860 8 VPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGE-------TG---DWIGTFEGHKGAVWSCCLDTNALRAA 77 (349)
Q Consensus 8 ~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~-------~~---~~~~~~~~h~~~v~~~~~~~~~~~l~ 77 (349)
=.++|++|.+||.|+++++ +++++.+|+.||+|+.|+.. +. ....++.||.+.||.++++....+|+
T Consensus 336 pi~tfraH~gPVl~v~v~~---n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll 412 (577)
T KOG0642|consen 336 PILTFRAHEGPVLCVVVPS---NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL 412 (577)
T ss_pred eeEEEecccCceEEEEecC---CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee
Confidence 3568899999999999986 89999999999999999422 11 34578899999999999999999999
Q ss_pred EeeCCCeEEEEECCCCCEEEEecc---CCeEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCcee-------ccCCC
Q 018860 78 SASADFSAKVWDALTGDVLHSFEH---KHIVRACSFSEDT-HLLLTGGMEKILRIFDLNRPDAPPREV-------DRSPG 146 (349)
Q Consensus 78 s~s~D~~i~vWd~~~~~~~~~~~~---~~~v~~~~~s~~~-~~l~s~~~d~~i~lwd~~~~~~~~~~~-------~~~~~ 146 (349)
+|+.||++|+|+...... .+|.. ...-.++.+.... ..+++...-+.-.++++..... ...+ .....
T Consensus 413 scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~ 490 (577)
T KOG0642|consen 413 SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-LLIFESSASPGPRRYP 490 (577)
T ss_pred eecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh-eeeccccCCCcccccC
Confidence 999999999999876655 33431 1222344443222 1112111112112222211110 0000 00112
Q ss_pred CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec-CCCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCcee
Q 018860 147 SVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE-TKSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGL 220 (349)
Q Consensus 147 ~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~ 220 (349)
.+..+.+.|.. -+..++..++.|+++|..++++++... +...++++++.|+|-+|.+ +.|+.+++|.+....+
T Consensus 491 ~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 491 QINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred ccceEEecCCC-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 34556655544 566688888999999999999887765 4567899999999987755 5699999998754433
No 199
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.68 E-value=4e-15 Score=126.91 Aligned_cols=253 Identities=16% Similarity=0.230 Sum_probs=172.9
Q ss_pred ccccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCC--------C--------CCeEEEeecccCCeEEEE
Q 018860 5 KIAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGE--------T--------GDWIGTFEGHKGAVWSCC 68 (349)
Q Consensus 5 ~~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~--------~--------~~~~~~~~~h~~~v~~~~ 68 (349)
++.-.-+|..|...|++|.|+| +|..||||+.+|.+.+|... + ....+.+++|...|..++
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~ 130 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSP---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLA 130 (434)
T ss_pred eEEEeecccCCcceeEEEEEcC---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhh
Confidence 3444456689999999999997 89999999999999999644 2 123567789999999999
Q ss_pred ECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC---------
Q 018860 69 LDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPP--------- 138 (349)
Q Consensus 69 ~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~--------- 138 (349)
|++++.++++++.|.++++||+..|+....+. |...|+.++|.|-++++++=+.|+..+.+++.......
T Consensus 131 Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~ 210 (434)
T KOG1009|consen 131 WSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA 210 (434)
T ss_pred ccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence 99999999999999999999999999888864 88899999999999999999999876776654322100
Q ss_pred -----------ceec--cCCCCeEEEEEecCCCeEEEEeeC---------CCeEEEEECCC-CceEEeecC-CCCeeEEE
Q 018860 139 -----------REVD--RSPGSVRTVAWLHSDQTILSTCTD---------MGGVRLWDVRS-GEIVQTLET-KSPVTSAE 194 (349)
Q Consensus 139 -----------~~~~--~~~~~i~~~~~~~~~~~~l~~~~~---------dg~v~vwd~~~-~~~~~~~~~-~~~v~~~~ 194 (349)
+.++ ..+.-...++|+|+ +.++++... -++.++++-.. .++...++. ..+...+.
T Consensus 211 ~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd-G~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr 289 (434)
T KOG1009|consen 211 KAFNEREGKSTRLFHDETLKSFFRRLSFTPD-GSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVR 289 (434)
T ss_pred cccCCCCcceeeeeecCchhhhhhhcccCCC-CcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEE
Confidence 0000 00112344567754 444444321 12334554322 223333332 22333344
Q ss_pred Ec------------------CCCcEEEEecCCeEEEEecCCceeeEEEc-C-CCceEEeeecCCCCCEEEEecCCCeEEE
Q 018860 195 VS------------------QDGRYITTADGSTVKFWDANHFGLVKSYN-M-PCTIESASLEPKYGNKFVAGGEDMWVRF 254 (349)
Q Consensus 195 ~~------------------~~~~~l~~~~d~~i~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~d~~i~v 254 (349)
++ |.+..++.+....|.+||..+..++-... + =..+..++|++ ++..++..+.||.+.+
T Consensus 290 ~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 290 FSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSL 368 (434)
T ss_pred eeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEE
Confidence 33 23334556677889999998866543321 1 12466788886 4889999999998887
Q ss_pred EeCCCCcE
Q 018860 255 FDFHTGNE 262 (349)
Q Consensus 255 ~d~~~~~~ 262 (349)
..++..+.
T Consensus 369 vtfe~~el 376 (434)
T KOG1009|consen 369 VTFEPWEL 376 (434)
T ss_pred EEEcchhc
Confidence 76665443
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.2e-15 Score=128.06 Aligned_cols=246 Identities=17% Similarity=0.238 Sum_probs=171.1
Q ss_pred eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC------CEEEEec--cCCeEEEEEEcCCCCEEEEEeCCC
Q 018860 53 WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG------DVLHSFE--HKHIVRACSFSEDTHLLLTGGMEK 124 (349)
Q Consensus 53 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~------~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~ 124 (349)
+.+.+.+|.+-|.++.|+.++++|++||.|..++||++... +++.... |...|.+++|.....++++|+.++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 45667799999999999999999999999999999997543 3333333 557899999999999999999999
Q ss_pred eEEEEECCCCCCCCcee-ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc----eEEeecCCCCeeEEEEcCCC
Q 018860 125 ILRIFDLNRPDAPPREV-DRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGE----IVQTLETKSPVTSAEVSQDG 199 (349)
Q Consensus 125 ~i~lwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~v~~~~~~~~~ 199 (349)
++.+-|+.+.+...... ....+.|.-+..+|- .+++++.+++|-|.+||.|... ++..-........+.|+|..
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999997654322111 122347888887776 4566677788999999998654 23223344567788899876
Q ss_pred -cEEE-EecCCeEEEEecCCcee-eEEEc----CC---CceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCC
Q 018860 200 -RYIT-TADGSTVKFWDANHFGL-VKSYN----MP---CTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGH 269 (349)
Q Consensus 200 -~~l~-~~~d~~i~iwd~~~~~~-~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h 269 (349)
.+|+ .+..+.+.+||.+.... +..+. .+ .......|+|. ++.|.+--.-..=.+||+.+..+.-....|
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~-G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS-GNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC-CCeehhhhccCCCEEeeeecccceeEeccC
Confidence 3443 34567899999986432 11111 11 12345677775 666665544445557788775543222233
Q ss_pred C-------cceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 270 H-------GPVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 270 ~-------~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
. ..|.+++|--+. .++|||.+=.|++|.+..
T Consensus 286 N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred CCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCC
Confidence 2 357788886544 589999999999998753
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.5e-14 Score=133.41 Aligned_cols=210 Identities=17% Similarity=0.123 Sum_probs=140.7
Q ss_pred CCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCceeccCCCCeEEEEEecCCC
Q 018860 82 DFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGME---KILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQ 158 (349)
Q Consensus 82 D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (349)
+..|++||...........+...+...+|+|||+.|+.++.+ ..|.+||+.+... ..+...++......|+|++.
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCCccCceeECCCCC
Confidence 578999998766544334567789999999999999887654 4699999865432 12222233345688998877
Q ss_pred eEEEEeeCCCeEEE--EECCCCceEEeecCCCCeeEEEEcCCCcEEE-Ee-cCCeEEEEecCCc-eeeEEEcCCCceEEe
Q 018860 159 TILSTCTDMGGVRL--WDVRSGEIVQTLETKSPVTSAEVSQDGRYIT-TA-DGSTVKFWDANHF-GLVKSYNMPCTIESA 233 (349)
Q Consensus 159 ~~l~~~~~dg~v~v--wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~ 233 (349)
.++.+...+|...| ||+.+++......+...+....|+|||+.++ ++ .++...+|+++.. .......... ...
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~ 338 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSA 338 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCc
Confidence 77776666676555 5776666544333444567889999998754 44 3577888876432 1122222221 335
Q ss_pred eecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
.++|+ ++.+++.+.++ +.+||+.+++.......+ ...++.|+|+|++|+.++.++..++|.+
T Consensus 339 ~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 339 QISAD-GKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred cCCCC-CCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 67774 77887777665 556999888754332222 2356889999999999999999888865
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.2e-15 Score=129.22 Aligned_cols=191 Identities=22% Similarity=0.208 Sum_probs=144.0
Q ss_pred eeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEe
Q 018860 20 VDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSF 99 (349)
Q Consensus 20 ~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~ 99 (349)
.+++|++ +|..|++++.||++|+|+..+...+.....|...|.++.|+||++.|++-+.| ..+||+.++|-++...
T Consensus 148 k~vaf~~---~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNG---DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcC---CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 4678886 88999999999999999977777777888899999999999999999999999 8999999999665554
Q ss_pred c---cCCeEEEEEEcCCC---C--EEEEEeCCCeEEEEECCCCCC----CCceeccCCCCeEEEEEecCCCeEEEEeeCC
Q 018860 100 E---HKHIVRACSFSEDT---H--LLLTGGMEKILRIFDLNRPDA----PPREVDRSPGSVRTVAWLHSDQTILSTCTDM 167 (349)
Q Consensus 100 ~---~~~~v~~~~~s~~~---~--~l~s~~~d~~i~lwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 167 (349)
. .......|.|+.|+ . .++.-..-+.|+.|++..... ..+....-...|.+++.+ .++.+++-|+.+
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-~dGkf~AlGT~d 302 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-DDGKFLALGTMD 302 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-CCCcEEEEeccC
Confidence 3 23356788898877 3 333334556788887754332 222222234578888876 566778888889
Q ss_pred CeEEEEECCCCceEEeecC--CCCeeEEEEcCCCcEEEE-ecCCeEEEEec
Q 018860 168 GGVRLWDVRSGEIVQTLET--KSPVTSAEVSQDGRYITT-ADGSTVKFWDA 215 (349)
Q Consensus 168 g~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~ 215 (349)
|.|-|++..+-+.++.++. ..-|+.+.|+|+.++++. +.+....+..+
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 9999999998888777653 447999999999887643 55655555543
No 203
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=9.4e-16 Score=135.39 Aligned_cols=164 Identities=20% Similarity=0.362 Sum_probs=126.1
Q ss_pred eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec--cCCeEEEEEEcC--CCCEEEEEeCCCeEEE
Q 018860 53 WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE--HKHIVRACSFSE--DTHLLLTGGMEKILRI 128 (349)
Q Consensus 53 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~v~~~~~s~--~~~~l~s~~~d~~i~l 128 (349)
..+.+.||++-|.|+.|+.+|.+|+|||.|-.+-|||.-..+.++.+. |...|.++.|-| ..++++||..|+.|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345788999999999999999999999999999999998888888875 888899999988 4568899999999999
Q ss_pred EECCCCC---------CCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceE-------Eee-c---CCC
Q 018860 129 FDLNRPD---------APPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIV-------QTL-E---TKS 188 (349)
Q Consensus 129 wd~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-------~~~-~---~~~ 188 (349)
||+...+ ...+....|...+..++-.|.+...+-+++.||++|-+|+|....- ..+ . .--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9997522 2334456677778888877777788889999999999999863211 111 0 012
Q ss_pred CeeEEEEcCCC-cEE-EEecCCeEEEEecC
Q 018860 189 PVTSAEVSQDG-RYI-TTADGSTVKFWDAN 216 (349)
Q Consensus 189 ~v~~~~~~~~~-~~l-~~~~d~~i~iwd~~ 216 (349)
...++.++|.. .+| +++.|...++||.+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 35567777765 333 34557778888864
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=1.8e-14 Score=127.10 Aligned_cols=260 Identities=17% Similarity=0.214 Sum_probs=177.3
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEE--------CCCCCeeEEeeCCCeE
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL--------DTNALRAASASADFSA 85 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~--------~~~~~~l~s~s~D~~i 85 (349)
-|..-|.|+.|+. +. -+...+.|..+..|...+...+..++-....|...-+ ......++.++.||.+
T Consensus 12 r~~e~vc~v~w~~---~e-ei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS---NE-EIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccc---cc-eEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 4677788998874 33 4555666776666653333222222211111211111 1123368889999999
Q ss_pred EEEECCCCCEEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEe
Q 018860 86 KVWDALTGDVLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 86 ~vWd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 164 (349)
.+-+- .++..+.+ .|...+.+-.|+|||.-|+++|.||.|++|.-. +.....+.....+|.+++|.|....++.+.
T Consensus 88 ~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 88 VILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred EEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 88874 44444444 488899999999999999999999999999842 211122333456799999999988888766
Q ss_pred eCCCeEEEEECCCC-ceEEeecCCCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCE
Q 018860 165 TDMGGVRLWDVRSG-EIVQTLETKSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNK 242 (349)
Q Consensus 165 ~~dg~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
+ +.+.+=.+... ++++--.|.+-+.++.|++...++++ +.|-..++||.....+..+-.+...+.+++|.|. ..
T Consensus 165 g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd--~~ 240 (737)
T KOG1524|consen 165 G--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE--KD 240 (737)
T ss_pred C--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc--cc
Confidence 5 46666555433 34444445567889999999888765 5688999999987777666666777899999984 55
Q ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEE
Q 018860 243 FVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRI 296 (349)
Q Consensus 243 ~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~v 296 (349)
|+.++.+ ++| ..+...+.|..++|||||..++.|...|.+.+
T Consensus 241 ~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 241 YLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 5555432 333 22345688999999999999999988887655
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=3.5e-13 Score=114.03 Aligned_cols=232 Identities=15% Similarity=0.248 Sum_probs=163.4
Q ss_pred CeEEEEECCCCCeeEEeeCCCeEEEEECCCCCE-EEEeccCCeEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCCCCc
Q 018860 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDV-LHSFEHKHIVRACSFSEDTHLLLTGGME--KILRIFDLNRPDAPPR 139 (349)
Q Consensus 63 ~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~d--~~i~lwd~~~~~~~~~ 139 (349)
.+....|..+...|..|+.|| -++++....+. .+.......|-..-|+. .++|..+.+ +.++++++..... .
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~--I 81 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT--I 81 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce--E
Confidence 355566888888888888888 57888765433 11111222344444543 455555543 4478888754322 1
Q ss_pred eeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC----CCeeEEEEcCCCcEEEE--e-cCCeEEE
Q 018860 140 EVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK----SPVTSAEVSQDGRYITT--A-DGSTVKF 212 (349)
Q Consensus 140 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~--~-~d~~i~i 212 (349)
.-...+.+|.++... .++++ .+-. ..|.|||+++.+.++++... ..+.++.+++.+.+++- + +.|.|.+
T Consensus 82 Ce~~fpt~IL~VrmN--r~RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIFFPTSILAVRMN--RKRLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEecCCceEEEEEc--cceEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 223345678888764 23444 4444 56999999999999988653 23556666666677764 2 3689999
Q ss_pred EecCCceeeEEEcC-CCceEEeeecCCCCCEEEEecCCCe-EEEEeCCCCcEEEEecCCC--cceeEEEEccCCCeEEEe
Q 018860 213 WDANHFGLVKSYNM-PCTIESASLEPKYGNKFVAGGEDMW-VRFFDFHTGNEIACNKGHH--GPVHCVRFSPGGESYASG 288 (349)
Q Consensus 213 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~-i~v~d~~~~~~~~~~~~h~--~~i~~l~~sp~~~~l~sg 288 (349)
||+.+.+.+..+.. ...+.+++|+++ |.++|++++.|+ ||||.+.+|+.+.+++--. ..|.+++|+|++++|++.
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 99999888877765 456788999984 999999999885 7999999999998886433 468999999999999999
Q ss_pred cCCCCEEEecCCCCCC
Q 018860 289 SEDGTIRIWQTGPVTN 304 (349)
Q Consensus 289 s~Dg~v~vW~~~~~~~ 304 (349)
|.-++|+++.++....
T Consensus 237 S~TeTVHiFKL~~~~~ 252 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSN 252 (391)
T ss_pred cCCCeEEEEEeccccc
Confidence 9999999999876543
No 206
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=9.7e-14 Score=127.89 Aligned_cols=236 Identities=17% Similarity=0.103 Sum_probs=151.4
Q ss_pred CeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCC---CeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEE
Q 018860 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASAD---FSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLL 118 (349)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D---~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (349)
.+.++|.. +...+.+..+...+.+.+|+||++.|+..+.+ ..|.+||+.+++..........+...+|+|||+.|+
T Consensus 177 ~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 177 QLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred EEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 35555553 44455566778889999999999999877643 459999999887655444455667899999998876
Q ss_pred -EEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEE--CCCCceEEeecCCCCeeEEEE
Q 018860 119 -TGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWD--VRSGEIVQTLETKSPVTSAEV 195 (349)
Q Consensus 119 -s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd--~~~~~~~~~~~~~~~v~~~~~ 195 (349)
+.+.++..++|.++......+.+..+........|+|++..++.++...|...+|. +.+++...............|
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI 335 (427)
T ss_pred EEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence 56778887777764332223334334444566789988877776665556666665 445543322222222345789
Q ss_pred cCCCcEEEE-ecC---CeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCC---eEEEEeCCCCcEEEEecC
Q 018860 196 SQDGRYITT-ADG---STVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDM---WVRFFDFHTGNEIACNKG 268 (349)
Q Consensus 196 ~~~~~~l~~-~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~i~v~d~~~~~~~~~~~~ 268 (349)
+|+|++++. +.+ ..|.+||+.+....... .........|+|+ ++.++.++.++ .+++.+. ++.....+..
T Consensus 336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~~~~~~p~~spd-g~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~ 412 (427)
T PRK02889 336 SPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DTTRDESPSFAPN-GRYILYATQQGGRSVLAAVSS-DGRIKQRLSV 412 (427)
T ss_pred CCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CCCCccCceECCC-CCEEEEEEecCCCEEEEEEEC-CCCceEEeec
Confidence 999998754 332 26999999876644332 2223345678885 67766655433 4666666 4555555555
Q ss_pred CCcceeEEEEccC
Q 018860 269 HHGPVHCVRFSPG 281 (349)
Q Consensus 269 h~~~i~~l~~sp~ 281 (349)
+.+.+...+|+|-
T Consensus 413 ~~g~~~~p~wsp~ 425 (427)
T PRK02889 413 QGGDVREPSWGPF 425 (427)
T ss_pred CCCCCCCCccCCC
Confidence 6667777788874
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=6e-12 Score=106.65 Aligned_cols=277 Identities=16% Similarity=0.148 Sum_probs=184.1
Q ss_pred ceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEE
Q 018860 18 PVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLH 97 (349)
Q Consensus 18 ~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~ 97 (349)
.+..+.|+ .++..|..|+.||. +++..+....-.....-...|.-+-|+.+=-.|++...-+.+|+.+.+.+..+.
T Consensus 7 ti~~~~~N---qd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 7 TINFIGFN---QDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred ceeeeeec---cceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence 44455555 58888999999986 666655443311111122234444566553334444344559999999888888
Q ss_pred EeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc--eeccCCCCeEEEEEecCCCeEEE-EeeCCCeEEEEE
Q 018860 98 SFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR--EVDRSPGSVRTVAWLHSDQTILS-TCTDMGGVRLWD 174 (349)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~v~vwd 174 (349)
.+..+..|-++.++. +.|+++-.+. |.+||++.-+.... ....++..+.++..++.+.++.. .+.+.|.|.+||
T Consensus 83 e~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 83 EIFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred EEecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 888888999999865 4566665554 99999975332211 12234445666665544434433 334568999999
Q ss_pred CCCCceEEeec-CCCCeeEEEEcCCCcEEEEec-CCe-EEEEecCCceeeEEEcC---CCceEEeeecCCCCCEEEEecC
Q 018860 175 VRSGEIVQTLE-TKSPVTSAEVSQDGRYITTAD-GST-VKFWDANHFGLVKSYNM---PCTIESASLEPKYGNKFVAGGE 248 (349)
Q Consensus 175 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-d~~-i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
..+-+.+..+. |.+++-+++|+++|.+|+++. .|+ ||++.+..+..+..|.- +..+.+++|+|+ ..+|++.++
T Consensus 160 ~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d-s~~L~~sS~ 238 (391)
T KOG2110|consen 160 TINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD-SQFLAASSN 238 (391)
T ss_pred cccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC-CCeEEEecC
Confidence 99988888886 457899999999999998765 454 79999998888777754 467889999985 788999999
Q ss_pred CCeEEEEeCCCCcE-------------------------------------EEEecCCCcce-eEEEEc--cCCCeEEEe
Q 018860 249 DMWVRFFDFHTGNE-------------------------------------IACNKGHHGPV-HCVRFS--PGGESYASG 288 (349)
Q Consensus 249 d~~i~v~d~~~~~~-------------------------------------~~~~~~h~~~i-~~l~~s--p~~~~l~sg 288 (349)
.++|++|.+..... ....+.-.+.. ..+.+. +..+.+..+
T Consensus 239 TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~va 318 (391)
T KOG2110|consen 239 TETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVA 318 (391)
T ss_pred CCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEE
Confidence 99999998754210 00000000111 123343 456788889
Q ss_pred cCCCCEEEecCCCC
Q 018860 289 SEDGTIRIWQTGPV 302 (349)
Q Consensus 289 s~Dg~v~vW~~~~~ 302 (349)
+.||.+..+.++..
T Consensus 319 s~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 319 SYDGHLYSYRLPPK 332 (391)
T ss_pred EcCCeEEEEEcCCC
Confidence 99999999988654
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=7.5e-13 Score=118.73 Aligned_cols=267 Identities=13% Similarity=0.115 Sum_probs=174.1
Q ss_pred EEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCC
Q 018860 34 LISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSED 113 (349)
Q Consensus 34 l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~ 113 (349)
+++-..++.+.+.|.++.+.+..+......-..+.|++|++++.+++.|+.|.++|+.+++.+..+........+++++|
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D 88 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD 88 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence 34556679999999999999999986554434578999999999999999999999999999999988888899999999
Q ss_pred CCEEEEEe-CCCeEEEEECCCCCCCCceec-------cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceE--Ee
Q 018860 114 THLLLTGG-MEKILRIFDLNRPDAPPREVD-------RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIV--QT 183 (349)
Q Consensus 114 ~~~l~s~~-~d~~i~lwd~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~--~~ 183 (349)
|++++++. ..+.+.++|..+.+.. +.+. .....+.++..+|....+++.--+.+.|-+-|....+.+ ..
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v-~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPV-KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EE-EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCEEEEEecCCCceeEeccccccce-eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 99998776 6899999998654322 1111 122346677767777777777777788888887765433 34
Q ss_pred ecCCCCeeEEEEcCCCcEEEEe--cCCeEEEEecCCceeeEEEcCCCceE----EeeecCCCCCEEE---------EecC
Q 018860 184 LETKSPVTSAEVSQDGRYITTA--DGSTVKFWDANHFGLVKSYNMPCTIE----SASLEPKYGNKFV---------AGGE 248 (349)
Q Consensus 184 ~~~~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---------~~~~ 248 (349)
+..........+.|+++++.++ ..+.|-++|..+.+.+.......... .--.+|..+...+ +.-.
T Consensus 168 i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig 247 (369)
T PF02239_consen 168 IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG 247 (369)
T ss_dssp EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccccc
Confidence 5555667889999999876443 36789999999887776553321110 0011222222222 2112
Q ss_pred CCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEe----cCCCCEEEecCCCC
Q 018860 249 DMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASG----SEDGTIRIWQTGPV 302 (349)
Q Consensus 249 d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sg----s~Dg~v~vW~~~~~ 302 (349)
...+.+||....+.++.+.....+ .-+..+|+++++... ...++|.++|....
T Consensus 248 ~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 248 TDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp --TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred CCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 224456788888888888876666 778889999999876 55688999998765
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=4.1e-15 Score=128.90 Aligned_cols=269 Identities=22% Similarity=0.271 Sum_probs=200.4
Q ss_pred ceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEE
Q 018860 18 PVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLH 97 (349)
Q Consensus 18 ~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~ 97 (349)
..+.+.|+- +|++|+.|++-|.+.-+|..++.+...+.. ...|..+.|-.+.+++|.+ ....+.|||- .|..+|
T Consensus 131 GPY~~~ytr---nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElH 204 (545)
T KOG1272|consen 131 GPYHLDYTR---NGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELH 204 (545)
T ss_pred CCeeeeecC---CccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEe
Confidence 345677774 899999999999999999888887666643 2457888888888776654 4667899995 577888
Q ss_pred EeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 018860 98 SFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS 177 (349)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 177 (349)
.+.....|..+.|-|-.-+|++++..|.++--|+..++. ...+....+.+..+.-.|- +-++-.|...|+|-+|.+.+
T Consensus 205 Clk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl-Va~~~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 205 CLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL-VASIRTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred ehhhcCchhhhcccchhheeeecccCCceEEEeechhhh-hHHHHccCCccchhhcCCc-cceEEEcCCCceEEecCCCC
Confidence 888778899999999999999999999999999976553 3334444556666665544 34566777789999999998
Q ss_pred CceE-EeecCCCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEE
Q 018860 178 GEIV-QTLETKSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFF 255 (349)
Q Consensus 178 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~ 255 (349)
.+++ +.+.+.++|.++++.++|+++++ +.|+.++|||++.+..+.++..+.....++++. +-+++.+....+.+|
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sq---kglLA~~~G~~v~iw 359 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQ---KGLLALSYGDHVQIW 359 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccc---ccceeeecCCeeeee
Confidence 8765 45577889999999999999876 459999999999988777776666666666653 345666666678888
Q ss_pred e-CCCC--cEEEEecCC--CcceeEEEEccCCCeEEEecCCCCEEEe
Q 018860 256 D-FHTG--NEIACNKGH--HGPVHCVRFSPGGESYASGSEDGTIRIW 297 (349)
Q Consensus 256 d-~~~~--~~~~~~~~h--~~~i~~l~~sp~~~~l~sgs~Dg~v~vW 297 (349)
. ...+ ..-.-+..| .++|..+.|.|-.+.|-.|-..|.-.+-
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 4 2221 111112223 4589999999988877777766654444
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=4e-13 Score=123.74 Aligned_cols=234 Identities=17% Similarity=0.157 Sum_probs=154.5
Q ss_pred CeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEee---CCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEE
Q 018860 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASAS---ADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLL 118 (349)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (349)
.+.++|.+... .+.+..+...+...+|+|||+.|+..+ .+..|.+|++.+++.......+..+...+|+|||+.|+
T Consensus 180 ~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 56677766443 344445667899999999999888654 34579999999887655444444556789999999887
Q ss_pred EE-eCCC--eEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe--EEEEECCCCceEEeecCCCCeeEE
Q 018860 119 TG-GMEK--ILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG--VRLWDVRSGEIVQTLETKSPVTSA 193 (349)
Q Consensus 119 s~-~~d~--~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~--v~vwd~~~~~~~~~~~~~~~v~~~ 193 (349)
.. +.++ .|.+||+.+... +.+......+....|+|++..++.++...+. |.++|+.+++..............
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~ 336 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA 336 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 54 3344 588889865432 2233334456788999888777766655454 455577666543322223344568
Q ss_pred EEcCCCcEEEE-ec-C--CeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCe---EEEEeCCCCcEEEEe
Q 018860 194 EVSQDGRYITT-AD-G--STVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMW---VRFFDFHTGNEIACN 266 (349)
Q Consensus 194 ~~~~~~~~l~~-~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---i~v~d~~~~~~~~~~ 266 (349)
.++|||++++. +. + ..|.+||+.+..... +..........|+| +++.++.++.++. ++++++ ++.....+
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l 413 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVST-DGRFKARL 413 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECC-CCCEEEEEEcCCCceEEEEEEC-CCCCeEEC
Confidence 89999988754 32 2 358889988765433 22222234567787 4888887776653 677777 45555667
Q ss_pred cCCCcceeEEEEccC
Q 018860 267 KGHHGPVHCVRFSPG 281 (349)
Q Consensus 267 ~~h~~~i~~l~~sp~ 281 (349)
.+|.+.+...+|+|-
T Consensus 414 ~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 414 PATDGQVKFPAWSPY 428 (429)
T ss_pred ccCCCCcCCcccCCC
Confidence 778888999999873
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.1e-12 Score=121.31 Aligned_cols=232 Identities=13% Similarity=0.089 Sum_probs=151.7
Q ss_pred CeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeC---CCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEE
Q 018860 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASA---DFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLL 118 (349)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (349)
.|.++|.. +...+.+..|...+.+.+|+||++.|+..+. +..|.+||+.+++......+...+...+|+|||+.|+
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 56666764 4455667788889999999999999887764 5689999999887655445666778899999998775
Q ss_pred -EEeCCCe--EEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceEEeecCCCCeeEE
Q 018860 119 -TGGMEKI--LRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMG--GVRLWDVRSGEIVQTLETKSPVTSA 193 (349)
Q Consensus 119 -s~~~d~~--i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~ 193 (349)
+.+.++. |.+||+.... .+.+..+........|+|++..++.++..+| .|.+||+.+++..........+...
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~ 339 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP 339 (435)
T ss_pred EEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence 5555655 5566765432 2333334445567889988777766554433 6888898776654433333445667
Q ss_pred EEcCCCcEEEEe-c-C--CeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecC-C-----CeEEEEeCCCCcEE
Q 018860 194 EVSQDGRYITTA-D-G--STVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGE-D-----MWVRFFDFHTGNEI 263 (349)
Q Consensus 194 ~~~~~~~~l~~~-~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d-----~~i~v~d~~~~~~~ 263 (349)
.|+|+|+.++.. . . ..|.+||+..... +.+..........|+|+ ++.++..+. . ..++++|+..+..
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spD-G~~i~~~~~~~~~~~~~~L~~~dl~g~~~- 416 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPN-GRVIMFFRQTPGSGGAPKLYTVDLTGRNE- 416 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCC-CCEEEEEEccCCCCCcceEEEEECCCCce-
Confidence 899999887543 2 2 3678888755432 33333334456778885 666655433 2 3688888866544
Q ss_pred EEecCCCcceeEEEEcc
Q 018860 264 ACNKGHHGPVHCVRFSP 280 (349)
Q Consensus 264 ~~~~~h~~~i~~l~~sp 280 (349)
..+. ..+.+...+|+|
T Consensus 417 ~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 417 REVP-TPGDASDPAWSP 432 (435)
T ss_pred EEcc-CCCCccCcccCC
Confidence 3333 233455667766
No 212
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.4e-13 Score=124.69 Aligned_cols=233 Identities=18% Similarity=0.118 Sum_probs=152.8
Q ss_pred CeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeC---CCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEE
Q 018860 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASA---DFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLL 118 (349)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (349)
.+.+||.. +...+.+..|...+.+.+|+||++.|+..+. +..|.+||+.+++............+.+|+|+|+.|+
T Consensus 185 ~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 185 ALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 57788875 4444556667778999999999999998774 3469999999887655444445556789999998775
Q ss_pred -EEeCCC--eEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe--EEEEECCCCceEEeecCCCCeeEE
Q 018860 119 -TGGMEK--ILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG--VRLWDVRSGEIVQTLETKSPVTSA 193 (349)
Q Consensus 119 -s~~~d~--~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~--v~vwd~~~~~~~~~~~~~~~v~~~ 193 (349)
+.+.++ .|.+||+.+... +.+..+........|+|++..++.++..+|. |.++|+.+++..............
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~--~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~ 341 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQL--TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA 341 (433)
T ss_pred EEEeCCCCceEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 445554 588888865432 2333333444677899887777766655454 777787776644322222334468
Q ss_pred EEcCCCcEEEEe-c-C--CeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecC---CCeEEEEeCCCCcEEEEe
Q 018860 194 EVSQDGRYITTA-D-G--STVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGE---DMWVRFFDFHTGNEIACN 266 (349)
Q Consensus 194 ~~~~~~~~l~~~-~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~v~d~~~~~~~~~~ 266 (349)
.|+|+|+.++.. . + ..|.+||+.+..... +..........|+|+ ++.++..+. ...|.++++.. .....+
T Consensus 342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt~~~~~~~p~~spd-G~~i~~~s~~~g~~~L~~~~~~g-~~~~~l 418 (433)
T PRK04922 342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LTPGSLDESPSFAPN-GSMVLYATREGGRGVLAAVSTDG-RVRQRL 418 (433)
T ss_pred EECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CCCCCCCCCceECCC-CCEEEEEEecCCceEEEEEECCC-CceEEc
Confidence 999999887543 2 2 268999998766543 322222345577774 676665543 34688888754 444555
Q ss_pred cCCCcceeEEEEcc
Q 018860 267 KGHHGPVHCVRFSP 280 (349)
Q Consensus 267 ~~h~~~i~~l~~sp 280 (349)
..+.+.+...+|+|
T Consensus 419 ~~~~g~~~~p~wsp 432 (433)
T PRK04922 419 VSADGEVREPAWSP 432 (433)
T ss_pred ccCCCCCCCCccCC
Confidence 55556677777876
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=2e-13 Score=116.25 Aligned_cols=235 Identities=18% Similarity=0.239 Sum_probs=170.7
Q ss_pred cCCeEEEEECCCC--CeeEEeeCCCeEEEEECCCCCEEEEec-------cCCeEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 018860 61 KGAVWSCCLDTNA--LRAASASADFSAKVWDALTGDVLHSFE-------HKHIVRACSFSEDTHLLLTGGMEKILRIFDL 131 (349)
Q Consensus 61 ~~~v~~~~~~~~~--~~l~s~s~D~~i~vWd~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~ 131 (349)
...|..++|..++ ..|..++.|..+..+.+....+..... ....|..++.. + ..|++|-.+|.+++|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEec
Confidence 3456777776544 456777788888888877766554431 22344444433 3 35777888999999998
Q ss_pred CCCCC---CCceeccCCCCeEEEEEecCCCeEEEEeeCC--CeEEEEECCCCceEEeecCC------------CCeeEEE
Q 018860 132 NRPDA---PPREVDRSPGSVRTVAWLHSDQTILSTCTDM--GGVRLWDVRSGEIVQTLETK------------SPVTSAE 194 (349)
Q Consensus 132 ~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~v~vwd~~~~~~~~~~~~~------------~~v~~~~ 194 (349)
..+.. +...+..+ ..+..+.-.+....++++|+.. ..+++||+.+.+.+ +..+ -.++++.
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCCCCccccceeeeeeccce
Confidence 75442 12222222 4566666677888999999988 78999999887433 3221 1245666
Q ss_pred EcCC---CcEEEEecCCeEEEEecCCc-eeeEEEcCC-CceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEE-ecC
Q 018860 195 VSQD---GRYITTADGSTVKFWDANHF-GLVKSYNMP-CTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIAC-NKG 268 (349)
Q Consensus 195 ~~~~---~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~ 268 (349)
|.+. .+++++..-+.+++||++.+ +++..+... ..+.++...|. ++.+++|..-+.+..||++.++.+.. +++
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC-CcEEEEecccchhheecccCceeeccccCC
Confidence 7654 35556666799999999875 456666553 34667777875 88899999999999999999998876 889
Q ss_pred CCcceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 269 HHGPVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 269 h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
.++.|.++..+|..++||++|-|..|||+|+..
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 999999999999999999999999999999865
No 214
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.61 E-value=1.4e-14 Score=130.18 Aligned_cols=201 Identities=17% Similarity=0.194 Sum_probs=140.4
Q ss_pred CCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC-------CeEEEeecccCCeEEEEECCC-CCeeEEeeCCCeEEE
Q 018860 16 SRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDTN-ALRAASASADFSAKV 87 (349)
Q Consensus 16 ~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~v 87 (349)
...|+++.|+|. |.+.|+.++.||.|++|....+ +.-..+.+|...|+++.|+|- ...|++++.|-+|++
T Consensus 627 gt~vtDl~WdPF--D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 627 GTLVTDLHWDPF--DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIEL 704 (1012)
T ss_pred CceeeecccCCC--ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeee
Confidence 346888999996 5568999999999999986543 345778899999999999983 457899999999999
Q ss_pred EECCCCCEEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCC-eEEEEEecCCCeEEEEee
Q 018860 88 WDALTGDVLHSF-EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGS-VRTVAWLHSDQTILSTCT 165 (349)
Q Consensus 88 Wd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~ 165 (349)
||+.++.....+ .|.+.|..++|||+|+++++.+.|+++++|..+....+..+-.+..+. --.+.|.-++..++++|-
T Consensus 705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF 784 (1012)
T ss_pred eehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc
Confidence 999988765544 699999999999999999999999999999987766554433322221 123556545556666654
Q ss_pred C---CCeEEEEECCCC--ceEEee--cCCCCeeEEEEcCCCcEE-EEe-cCCeEEEEecCCc
Q 018860 166 D---MGGVRLWDVRSG--EIVQTL--ETKSPVTSAEVSQDGRYI-TTA-DGSTVKFWDANHF 218 (349)
Q Consensus 166 ~---dg~v~vwd~~~~--~~~~~~--~~~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~ 218 (349)
+ .++|.+||..+- ..+.+. .......--.+.+|...| .++ .|..|.+|.+-..
T Consensus 785 dk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 785 DKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 3 357888886542 233222 111111112234455443 333 5889999987543
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=9.2e-13 Score=117.32 Aligned_cols=277 Identities=16% Similarity=0.187 Sum_probs=189.3
Q ss_pred cCCCceeeEEEeecCCCccEE-EEEecCCCeEEEeCCCCCeEEEeeccc--CCeEEEEECCCCCeeEEeeCCCeEEEEEC
Q 018860 14 GHSRPVVDLFYSPITPDGFFL-ISASKDSSPMLRNGETGDWIGTFEGHK--GAVWSCCLDTNALRAASASADFSAKVWDA 90 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l-~s~s~d~~i~iw~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~D~~i~vWd~ 90 (349)
+|...-+.|..+| ||+|| ++|..-=.|++|+..+-.+ .|+.|. ..|.-.-++.|-..++---.|.+|.+-..
T Consensus 49 e~p~ast~ik~s~---DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSP---DGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecC---CCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 5566666776665 99987 4555666799999875433 455553 33333334555555666677888766543
Q ss_pred CCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 018860 91 LTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGV 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v 170 (349)
. | ....+.-+..-+.++++.-..-|+.++....|.-+++..+.. ...+....+.++++..++-.+ +|++|+.+|.|
T Consensus 124 ~-G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf-L~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~V 199 (703)
T KOG2321|consen 124 Y-G-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF-LNPFETDSGELNVVSINEEHG-LLACGTEDGVV 199 (703)
T ss_pred c-C-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc-ccccccccccceeeeecCccc-eEEecccCceE
Confidence 2 2 222233344556777776554455555555566667665433 233444456788888766544 67778888999
Q ss_pred EEEECCCCceEEeecCCC------------CeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcC--CCceEEeee
Q 018860 171 RLWDVRSGEIVQTLETKS------------PVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNM--PCTIESASL 235 (349)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~ 235 (349)
..||.|....+.++.... .|+++.|+.+|..+.++ ..|.+.|||+++.+++..-.+ ...+..+.|
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence 999999887776664322 38999999999877665 589999999998877655433 445677888
Q ss_pred cCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 236 EPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 236 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
.+.++..-+...+...+++||-.+|+....+.. +..+..+|+-|++.++.++-.+..+..+=+.
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred cccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 776556666667778999999999998876654 3449999999999999999999888776443
No 216
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.59 E-value=2.8e-12 Score=107.14 Aligned_cols=257 Identities=15% Similarity=0.162 Sum_probs=169.2
Q ss_pred EEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCC-eeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCC
Q 018860 36 SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNAL-RAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDT 114 (349)
Q Consensus 36 s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~ 114 (349)
....|+.+.+|+....++--.++.-.+++.+.+|+|||+ .|.+...|-.|.||.+.+....+.--.+..+..++|+|||
T Consensus 66 ~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDG 145 (447)
T ss_pred eeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCC
Confidence 335666778888777777777777788899999999995 5667888999999999887665544344567899999999
Q ss_pred CEEEEEeCCCe--------------EEEEECCCCCCCC-------------------ce-eccCCCCeEEEEEecCCCeE
Q 018860 115 HLLLTGGMEKI--------------LRIFDLNRPDAPP-------------------RE-VDRSPGSVRTVAWLHSDQTI 160 (349)
Q Consensus 115 ~~l~s~~~d~~--------------i~lwd~~~~~~~~-------------------~~-~~~~~~~i~~~~~~~~~~~~ 160 (349)
++.+-++.-.- ++-+++++.+... +. ...-.-.+..++|+|. +++
T Consensus 146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~-~qf 224 (447)
T KOG4497|consen 146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPC-NQF 224 (447)
T ss_pred ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccc-cce
Confidence 98776653210 0011111111100 00 0111235778889865 456
Q ss_pred EEEeeCCCeEEEEECCC---------------Cc----------e-----------------------------------
Q 018860 161 LSTCTDMGGVRLWDVRS---------------GE----------I----------------------------------- 180 (349)
Q Consensus 161 l~~~~~dg~v~vwd~~~---------------~~----------~----------------------------------- 180 (349)
++.|+.|+.+|+-+--+ .+ .
T Consensus 225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK 304 (447)
T ss_pred EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence 77777788887732100 00 0
Q ss_pred EEeecC-------CCCeeEEEEcCCCcEEEEecC---CeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCC
Q 018860 181 VQTLET-------KSPVTSAEVSQDGRYITTADG---STVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDM 250 (349)
Q Consensus 181 ~~~~~~-------~~~v~~~~~~~~~~~l~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 250 (349)
++.++. ...+..++|++|..++++-.| ..+-+||++..++...+.....+....|+|... .++.+....
T Consensus 305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~p-rL~vctg~s 383 (447)
T KOG4497|consen 305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRP-RLVVCTGKS 383 (447)
T ss_pred eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCc-eEEEEcCCc
Confidence 000000 112456789999999888665 468999999877665555566788899999744 455555556
Q ss_pred eEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEE
Q 018860 251 WVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIR 295 (349)
Q Consensus 251 ~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~ 295 (349)
.+++|...-...+... +-...|..+.|...|..++-.+.|....
T Consensus 384 rLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 384 RLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred eEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 6999987654444432 2337899999999999999999998643
No 217
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=8.5e-14 Score=122.88 Aligned_cols=206 Identities=15% Similarity=0.210 Sum_probs=147.0
Q ss_pred cEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEE-eccCCeEEEEEE
Q 018860 32 FFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHS-FEHKHIVRACSF 110 (349)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~-~~~~~~v~~~~~ 110 (349)
..++.+|.||.+.|.+ .++..-++++.|.+.|.|-.|++||.-|+|+|.||.||+|.-. |-...+ .+...+|+|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEE
Confidence 3677889999998876 3467778899999999999999999999999999999999853 322222 245678999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCe
Q 018860 111 SEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPV 190 (349)
Q Consensus 111 s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v 190 (349)
.|+.+.++-+..+ .+.+=.+... .....-..|.+-|.++.|++.. .++++|+.|-..++||-........-.+..++
T Consensus 154 ~p~S~~vl~c~g~-h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 154 APNSNSIVFCQGG-HISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGANLFTSAAEEYAI 230 (737)
T ss_pred CCCCCceEEecCC-eEEEeecccc-cceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcccccCChhccce
Confidence 9987766554333 3444444322 2223346788999999998765 46678888899999997655555555667799
Q ss_pred eEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEE
Q 018860 191 TSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRF 254 (349)
Q Consensus 191 ~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 254 (349)
++++|+|+..+++.+ -.++|+=..+ ...+..++|+++ +..++.|+..|.+.+
T Consensus 231 TSva~npd~~~~v~S-~nt~R~~~p~----------~GSifnlsWS~D-GTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 231 TSVAFNPEKDYLLWS-YNTARFSSPR----------VGSIFNLSWSAD-GTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeccccceeeee-eeeeeecCCC----------ccceEEEEEcCC-CceeeccccCceEEE
Confidence 999999995555433 2233321111 234667888874 888888887776543
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=3.6e-12 Score=106.02 Aligned_cols=232 Identities=14% Similarity=0.209 Sum_probs=139.4
Q ss_pred eEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeE-EeeCC------CeEEEEECCCC
Q 018860 21 DLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAA-SASAD------FSAKVWDALTG 93 (349)
Q Consensus 21 ~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~D------~~i~vWd~~~~ 93 (349)
.+.|+ .|...++.|..+| .|||+.+..+...+.+-+...+.-+..-...++|+ .||.. ..|-|||-...
T Consensus 10 svs~N---QD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 10 SVSFN---QDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred EEEEc---cCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 47776 3555677676655 58998765433333333333322222222333443 34433 46899998788
Q ss_pred CEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceec--cCCCCeEEEEEecCCCeEEEE-eeCCCeE
Q 018860 94 DVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVD--RSPGSVRTVAWLHSDQTILST-CTDMGGV 170 (349)
Q Consensus 94 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~-~~~dg~v 170 (349)
.++..+.....|.++.+.++. |++. ....|.+|.....-...+.+. ..+....++.-. .+..+|+. |-.-|+|
T Consensus 86 ~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~-~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT-SNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCC-CCceEEEcCCCccceE
Confidence 889999999999999998863 4443 356799999863322222221 223333333211 22233332 3334677
Q ss_pred EEEECCCCce---EEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEec
Q 018860 171 RLWDVRSGEI---VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGG 247 (349)
Q Consensus 171 ~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
.|-|+...+. .....|.+++.+++++.+ |..+|+++
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~-----------------------------------------Gt~vATaS 200 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQ-----------------------------------------GTLVATAS 200 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCC-----------------------------------------ccEEEEec
Confidence 7777654433 111123344444444444 55566666
Q ss_pred CCCe-EEEEeCCCCcEEEEecC--CCcceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 248 EDMW-VRFFDFHTGNEIACNKG--HHGPVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 248 ~d~~-i~v~d~~~~~~~~~~~~--h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
..|+ ||+||..+|+.+.+++- ....|.+++|||+..+||..|..|+|+|+.+..
T Consensus 201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 6554 67888888888777652 346799999999999999999999999998754
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=8.3e-12 Score=115.08 Aligned_cols=212 Identities=17% Similarity=0.119 Sum_probs=139.5
Q ss_pred eEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeE
Q 018860 84 SAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGG---MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTI 160 (349)
Q Consensus 84 ~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (349)
.|.+||...........+...+...+|+|||+.|+..+ .+..+.+|++...+. +.+...++...+..|+|++..+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCCEE
Confidence 69999987665544455667899999999999888654 345788999865432 2222233445568899988877
Q ss_pred EEEeeCCC--eEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEE-Eec-CCeEEEE--ecCCceeeEEEcCCCceEEee
Q 018860 161 LSTCTDMG--GVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYIT-TAD-GSTVKFW--DANHFGLVKSYNMPCTIESAS 234 (349)
Q Consensus 161 l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~iw--d~~~~~~~~~~~~~~~~~~~~ 234 (349)
+.+...+| .|.+||+.+++..........+....|+|||+.++ +++ ++...+| |+.+....+............
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~ 337 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDAD 337 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEE
Confidence 76655444 58999999887665544455667889999998764 444 3444444 666554433322222334567
Q ss_pred ecCCCCCEEEEecC-C--CeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCC---EEEecCC
Q 018860 235 LEPKYGNKFVAGGE-D--MWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGT---IRIWQTG 300 (349)
Q Consensus 235 ~~~~~~~~~~~~~~-d--~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~---v~vW~~~ 300 (349)
|+|+ ++.++..+. + ..|++||+.+++.. .+... ....+..|+|||++|+..+.++. +.+|++.
T Consensus 338 ~SpD-G~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 338 VSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred ECCC-CCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 7874 677765543 2 46889999887643 23221 22346789999999998887765 5666653
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=3.8e-12 Score=107.57 Aligned_cols=237 Identities=16% Similarity=0.238 Sum_probs=159.1
Q ss_pred CeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEecc--CCeEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCc
Q 018860 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEH--KHIVRACSFSEDT-HLLLTGGMEKILRIFDLNRPDAPPR 139 (349)
Q Consensus 63 ~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~--~~~v~~~~~s~~~-~~l~s~~~d~~i~lwd~~~~~~~~~ 139 (349)
.+..++|++.-.-++++..|..||+++-.. .+...+++ ...|++++|.|.+ ..|+.|...| |.+|.........+
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccc
Confidence 356778888766789999999999999766 55555554 3569999999965 4555555554 89998754322222
Q ss_pred e----------e--ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEee-cCCCCeeEEEEcCCCcEEEEec
Q 018860 140 E----------V--DRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTL-ETKSPVTSAEVSQDGRYITTAD 206 (349)
Q Consensus 140 ~----------~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 206 (349)
. + ......|+++.|.+++..++.++-.+..|+|||..++..+-.. .....+..+.|+||+.++.++.
T Consensus 178 ~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred ccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 1 1 1112478999999887777766667789999999988765444 3455788999999999887665
Q ss_pred -CCeEEEEec-CCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCC--c--------E---EEEe-----
Q 018860 207 -GSTVKFWDA-NHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTG--N--------E---IACN----- 266 (349)
Q Consensus 207 -d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~--~--------~---~~~~----- 266 (349)
|+..++|.. +.....+..-.+..+...+|+|.....+++++..-.++-...... . . +..+
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti 337 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI 337 (445)
T ss_pred ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence 999999954 444444544445578888999864444555555544443322111 0 0 0111
Q ss_pred -cC---CCcceeEEEEccCCCeEEEecCCC--------CEEEecCCC
Q 018860 267 -KG---HHGPVHCVRFSPGGESYASGSEDG--------TIRIWQTGP 301 (349)
Q Consensus 267 -~~---h~~~i~~l~~sp~~~~l~sgs~Dg--------~v~vW~~~~ 301 (349)
.+ -.+++.+++|.|.|.+||+.-..+ .|.+||+..
T Consensus 338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred hcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 11 146789999999999999754433 356677654
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.3e-11 Score=114.20 Aligned_cols=213 Identities=14% Similarity=0.117 Sum_probs=141.2
Q ss_pred CeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCe
Q 018860 83 FSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGM---EKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQT 159 (349)
Q Consensus 83 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (349)
..|.+||..+........+...+...+|+|||+.|+..+. +..|.+||+.+... +.+...++.+....|+|++..
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCCE
Confidence 4788999876655555567778999999999998887663 46899999875432 233445566778899998888
Q ss_pred EEEEeeCCC--eEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEE-ec-C--CeEEEEecCCceeeEEEcCCCceEEe
Q 018860 160 ILSTCTDMG--GVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITT-AD-G--STVKFWDANHFGLVKSYNMPCTIESA 233 (349)
Q Consensus 160 ~l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~ 233 (349)
++.+.+.++ .|.+||+.+++...............|+||++.++. ++ + ..|.+||+......+...........
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~ 339 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP 339 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence 777766555 477889988876543333444567899999987654 32 2 36888888766554433333334456
Q ss_pred eecCCCCCEEEEecCC---CeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecC-CC-----CEEEecCC
Q 018860 234 SLEPKYGNKFVAGGED---MWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSE-DG-----TIRIWQTG 300 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~d---~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~-Dg-----~v~vW~~~ 300 (349)
.|+|+ ++.++....+ ..|.+||+.++.. ..+. ....+....|+|+|+.|+..+. .+ .|.+.++.
T Consensus 340 ~~Spd-G~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 340 VWSPR-GDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred EECCC-CCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 78885 6777655432 4788889865543 2332 2234678899999998865443 22 35555553
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.7e-12 Score=118.72 Aligned_cols=200 Identities=15% Similarity=0.100 Sum_probs=130.8
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCC---CeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeE-EeeCCC--eE
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAA-SASADF--SA 85 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~D~--~i 85 (349)
+..|..++....|+| ||++|+..+.++ .+.+|+..+++.. .+..+.+...+..|+||++.|+ +.+.++ .|
T Consensus 199 lt~~~~~v~~p~wSp---Dg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 199 ILRSAEPILSPAWSP---DGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred eecCCCccccccCCC---CCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 445666788888886 899999887543 5888998877653 2333344455789999998775 555555 59
Q ss_pred EEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeC-CCe--EEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEE
Q 018860 86 KVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGM-EKI--LRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILS 162 (349)
Q Consensus 86 ~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~--i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 162 (349)
.+||+.+++......+.......+|+|||+.|+..+. ++. |.++++..... +.+...........|+|++..++.
T Consensus 275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~~lt~~g~~~~~~~~SpDG~~Ia~ 352 (433)
T PRK04922 275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--ERLTFQGNYNARASVSPDGKKIAM 352 (433)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEeecCCCCccCEEECCCCCEEEE
Confidence 9999998876554455555667899999998887663 444 44455543321 222122233446789988777766
Q ss_pred EeeCCC--eEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEE-ec---CCeEEEEecCCc
Q 018860 163 TCTDMG--GVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITT-AD---GSTVKFWDANHF 218 (349)
Q Consensus 163 ~~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~---d~~i~iwd~~~~ 218 (349)
+..+++ .|.+||+.+++.. .+..........|+|||++++. +. ...|.++++...
T Consensus 353 ~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 554433 6999999887755 3333223445689999987643 32 235777777543
No 223
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=3.2e-12 Score=107.41 Aligned_cols=241 Identities=18% Similarity=0.264 Sum_probs=165.7
Q ss_pred CCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC-CC----eEEEeecccC------------CeEEEEECCCCC--ee
Q 018860 16 SRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET-GD----WIGTFEGHKG------------AVWSCCLDTNAL--RA 76 (349)
Q Consensus 16 ~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~-~~----~~~~~~~h~~------------~v~~~~~~~~~~--~l 76 (349)
.+.|.+|.|.. .|.+|++|..+|-+.++.-.. .+ ....++.|.. .|..+.|.+++. .+
T Consensus 25 adiis~vef~~---~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDH---YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEeec---ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 45688999985 899999999999998885332 11 3445555543 256667766544 46
Q ss_pred EEeeCCCeEEEEECCCCCE-----------------------------------EEEec--cCCeEEEEEEcCCCCEEEE
Q 018860 77 ASASADFSAKVWDALTGDV-----------------------------------LHSFE--HKHIVRACSFSEDTHLLLT 119 (349)
Q Consensus 77 ~s~s~D~~i~vWd~~~~~~-----------------------------------~~~~~--~~~~v~~~~~s~~~~~l~s 119 (349)
+....|++|++|.+..... .+.+. |+.-|+++.++.|...++|
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 6677899999998643211 11111 5566899999999998887
Q ss_pred EeCCCeEEEEECCCCCCCCceec--c-----CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEE----eecC--
Q 018860 120 GGMEKILRIFDLNRPDAPPREVD--R-----SPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQ----TLET-- 186 (349)
Q Consensus 120 ~~~d~~i~lwd~~~~~~~~~~~~--~-----~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~----~~~~-- 186 (349)
+ .|-.|.+|.+.........+. + ...-|++..|+|..-.+++-++..|+||+-|+|...... .++.
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 5 577899999876554332222 2 223478888998877777777777999999999543211 1111
Q ss_pred -----------CCCeeEEEEcCCCcEEEEecCCeEEEEecC-CceeeEEEcCCCc----------------eEEeeecCC
Q 018860 187 -----------KSPVTSAEVSQDGRYITTADGSTVKFWDAN-HFGLVKSYNMPCT----------------IESASLEPK 238 (349)
Q Consensus 187 -----------~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~-~~~~~~~~~~~~~----------------~~~~~~~~~ 238 (349)
-..+..+.|+++|+++.+-+=-+|++||++ ..+++.+++..+. -..++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg- 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG- 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-
Confidence 134778999999999988777899999994 4566666654321 12345554
Q ss_pred CCCEEEEecCCCeEEEEeCCCCc
Q 018860 239 YGNKFVAGGEDMWVRFFDFHTGN 261 (349)
Q Consensus 239 ~~~~~~~~~~d~~i~v~d~~~~~ 261 (349)
++.++++|+..+..++|+...|.
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CcceEecccccceEEEecCCCCc
Confidence 36789999999999999965544
No 224
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.3e-13 Score=118.93 Aligned_cols=247 Identities=21% Similarity=0.312 Sum_probs=181.9
Q ss_pred eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec--cCCeEEEEEEcC--CCCEEEEEeCCCeEEE
Q 018860 53 WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE--HKHIVRACSFSE--DTHLLLTGGMEKILRI 128 (349)
Q Consensus 53 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~v~~~~~s~--~~~~l~s~~~d~~i~l 128 (349)
+...|.+|.+-|..|.|...|..|+|+|.|..|-+||-..+..+..|. |...|....|-| +...+++++.||.+|+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 345678899999999999999999999999999999988888777775 767777777876 3467899999999998
Q ss_pred EECCCCCCC--CceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec---CC-C---CeeEEEEcCCC
Q 018860 129 FDLNRPDAP--PREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE---TK-S---PVTSAEVSQDG 199 (349)
Q Consensus 129 wd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~~-~---~v~~~~~~~~~ 199 (349)
=.+...+.. ...+..|.+++..++..|...+-|.+|+.|+.+.-.|++++.....+. .. . ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 877543322 234567889999999889888889999999999999999876544332 11 1 35567777765
Q ss_pred c--EEEEecCCeEEEEecCCceee------EEE-------cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCC--CC--
Q 018860 200 R--YITTADGSTVKFWDANHFGLV------KSY-------NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFH--TG-- 260 (349)
Q Consensus 200 ~--~l~~~~d~~i~iwd~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~--~~-- 260 (349)
. +.+++.|..+++||.+..... ..+ ..+..+..++++.. +.-+++.-.|-.|++|.-. .|
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~-~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD-GSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC-ccceeeeecccceEEeccccccCCC
Confidence 3 445567899999998753221 221 22345667777654 4556666678889999532 22
Q ss_pred --------cEEE-EecCCC--cceeEEEE-ccCCCeEEEecCCCCEEEecCC
Q 018860 261 --------NEIA-CNKGHH--GPVHCVRF-SPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 261 --------~~~~-~~~~h~--~~i~~l~~-sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
..+. .++||. ..|..+-| -|...|++|||.-|.|.||+-.
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence 1222 378884 46777775 5788999999999999999853
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=8.4e-14 Score=120.91 Aligned_cols=225 Identities=16% Similarity=0.237 Sum_probs=175.4
Q ss_pred EEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccC
Q 018860 65 WSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRS 144 (349)
Q Consensus 65 ~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~ 144 (349)
..+.++.+|..|+-|+..|.|-.+|-.++.....+.....|+.+.|-++.+++|++ +...+.+||=. ......+..+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~--GtElHClk~~ 209 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN--GTELHCLKRH 209 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCC--CcEEeehhhc
Confidence 45778889999999999999999999999988888888899999999888877764 56678888843 2233444433
Q ss_pred CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeE
Q 018860 145 PGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVK 222 (349)
Q Consensus 145 ~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~ 222 (349)
..+..+.|.|.. .+|+++++.|.++.-|+.+|+.+..+... ..+..+.-+|-+-.+-. ..+|+|.+|......++-
T Consensus 210 -~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv 287 (545)
T KOG1272|consen 210 -IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV 287 (545)
T ss_pred -Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH
Confidence 467888898754 56778888899999999999999888653 45666777887777644 468999999998877654
Q ss_pred -EEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 223 -SYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 223 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
.+.+...+.++++.+. +++++++|.|..++|||++.-..+.++.. --+...++||..| |+..|....|.+|.
T Consensus 288 KiLcH~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 288 KILCHRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred HHHhcCCCcceEEECCC-CcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence 3455667889999985 99999999999999999998776665543 3456788898655 44566677899995
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=1.5e-13 Score=114.56 Aligned_cols=218 Identities=16% Similarity=0.252 Sum_probs=151.5
Q ss_pred EEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCCCCceeccCC
Q 018860 67 CCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGG-MEKILRIFDLNRPDAPPREVDRSP 145 (349)
Q Consensus 67 ~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~lwd~~~~~~~~~~~~~~~ 145 (349)
++|+|+|+++|+++.- .+-|=|.++.+..+.|.--..|.-+.|..|..+++.+. .|+.|.+|++..++.. ......+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~-ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY-CKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE-EEeccCC
Confidence 6899999999999976 66688887776655554445677788988888877654 6889999999766542 3345566
Q ss_pred CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEec--C--CeEEEEecCCceee
Q 018860 146 GSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTAD--G--STVKFWDANHFGLV 221 (349)
Q Consensus 146 ~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d--~~i~iwd~~~~~~~ 221 (349)
..+.++.|+|++..++.++.-+-.|.+|.+.+.+....--.+..+..++|+|||++.+... | ..+.+........+
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll 171 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILL 171 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHH
Confidence 7899999999998999888888889999998877654444455678899999999987643 2 12333222223333
Q ss_pred EEEcCCC-ceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEe
Q 018860 222 KSYNMPC-TIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297 (349)
Q Consensus 222 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW 297 (349)
+.+..+. ....+-|+|+ +..+.+||..-.-.+..+. ..-.+..++|+|.+++|+.|+.|+.+|+-
T Consensus 172 ~~f~~dT~DltgieWsPd----------g~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 172 KEFKLDTIDLTGIEWSPD----------GNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HhcCCCcccccCceECCC----------CcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhh
Confidence 3333322 2334556663 3455677754322222221 12357889999999999999999999883
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=5.8e-13 Score=118.59 Aligned_cols=191 Identities=18% Similarity=0.264 Sum_probs=147.4
Q ss_pred eeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEe
Q 018860 20 VDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSF 99 (349)
Q Consensus 20 ~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~ 99 (349)
.+++|+-.+.| |..++....+.-.+++.|.++..|.-..+.+++|.+++-..+|+.|+.||.|..||........++
T Consensus 137 RDm~y~~~scD---ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l 213 (703)
T KOG2321|consen 137 RDMKYHKPSCD---LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL 213 (703)
T ss_pred ccccccCCCcc---EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence 46677765544 444545566777788999999999998899999999999999999999999999998876655444
Q ss_pred c-------cCC-----eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCC
Q 018860 100 E-------HKH-----IVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDM 167 (349)
Q Consensus 100 ~-------~~~-----~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 167 (349)
. |+. .|+++.|+.+|-.+++|..+|.+.+||++........-+...-+|..+.|.+.++.-.+.+.+.
T Consensus 214 ~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk 293 (703)
T KOG2321|consen 214 DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK 293 (703)
T ss_pred ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecch
Confidence 3 222 3999999999999999999999999999876554444445556789999987654433334455
Q ss_pred CeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEE-EEecCCeEEEE
Q 018860 168 GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYI-TTADGSTVKFW 213 (349)
Q Consensus 168 g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~~i~iw 213 (349)
..++|||-.+|+....++...+++.+++-|++-++ ++-++..+..|
T Consensus 294 ~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 294 RILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred HHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 89999999999999999988889999999986554 44455555444
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=7.6e-14 Score=123.21 Aligned_cols=93 Identities=20% Similarity=0.342 Sum_probs=83.1
Q ss_pred CCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCE
Q 018860 16 SRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDV 95 (349)
Q Consensus 16 ~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~ 95 (349)
++.|...+||| ||++||+.|.||.+||++..+.+++..++.--+...||+|+|||++|+|||.|..|.||.+..++.
T Consensus 290 ~g~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV 366 (636)
T KOG2394|consen 290 EGSINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV 366 (636)
T ss_pred cccccceeEcC---CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceE
Confidence 44788889997 999999999999999999998888777766667899999999999999999999999999998887
Q ss_pred EEEe-ccCCeEEEEEEc
Q 018860 96 LHSF-EHKHIVRACSFS 111 (349)
Q Consensus 96 ~~~~-~~~~~v~~~~~s 111 (349)
+..- .|+..|..++|.
T Consensus 367 VARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 367 VARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEeccccccceeeEeec
Confidence 7664 488999999997
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=1.7e-12 Score=106.00 Aligned_cols=111 Identities=19% Similarity=0.264 Sum_probs=90.9
Q ss_pred CCCceeeEEEeecCCCccEEE--EEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCC---CeEEEEE
Q 018860 15 HSRPVVDLFYSPITPDGFFLI--SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASAD---FSAKVWD 89 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~--s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D---~~i~vWd 89 (349)
..++|.+++|+| +|+.++ .|..++.+.+|+.+ ++.+.++. ...+..+.|+|+|++|++|+.+ |.+.+||
T Consensus 58 ~~~~I~~~~WsP---~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSP---NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECc---CCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 456799999998 676654 34567899999986 66677664 5677889999999999998754 6699999
Q ss_pred CCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeC------CCeEEEEECC
Q 018860 90 ALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGM------EKILRIFDLN 132 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------d~~i~lwd~~ 132 (349)
..+.+.+..++|.. +..++|+|+|++++++.. |..++||++.
T Consensus 132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 99998888888775 679999999999999864 6778999975
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=5.9e-11 Score=109.59 Aligned_cols=211 Identities=18% Similarity=0.150 Sum_probs=134.0
Q ss_pred CeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCC---CeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEE
Q 018860 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASAD---FSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLL 118 (349)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D---~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (349)
.+.+++.. +...+.+..+...+...+|+||+++|+.++.+ ..|++||+.+++......+...+.+.+|+|+|+.|+
T Consensus 171 ~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 45666664 33345565677778999999999999877654 479999999887655555556677899999998776
Q ss_pred -EEeCCC--eEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceEEeecCCCCeeEE
Q 018860 119 -TGGMEK--ILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMG--GVRLWDVRSGEIVQTLETKSPVTSA 193 (349)
Q Consensus 119 -s~~~d~--~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~ 193 (349)
+.+.++ .|.+|++.+... ..+..+........|++++..++.++...+ .|.++|+.+++..............
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~ 327 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQL--TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASP 327 (417)
T ss_pred EEECCCCCccEEEEECCCCCE--EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCe
Confidence 444444 577888765332 222233333445678887777766554433 6888898877654333344455678
Q ss_pred EEcCCCcEEEEe-cCC---eEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCC---eEEEEeC
Q 018860 194 EVSQDGRYITTA-DGS---TVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDM---WVRFFDF 257 (349)
Q Consensus 194 ~~~~~~~~l~~~-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~i~v~d~ 257 (349)
.++|++++++.+ .++ .|.+||+.+.... .+..........|.|. ++.++..+.++ .+++.+.
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spd-g~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPN-GRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCC-CCEEEEEEeCCCcEEEEEEEC
Confidence 899999877553 333 6888998775432 2222222234467774 66666554432 3555553
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=1.2e-11 Score=117.33 Aligned_cols=144 Identities=22% Similarity=0.332 Sum_probs=118.1
Q ss_pred CccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEE--EeccCCeEEE
Q 018860 30 DGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLH--SFEHKHIVRA 107 (349)
Q Consensus 30 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~--~~~~~~~v~~ 107 (349)
+--++++|+.-+.+.+|+..-.+...-+.||.+.|..+.++.||.+++|+|.|.++|+|++++++... .|.|+..|..
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 56699999999999999976333333588999999999999999999999999999999999987654 5789999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCC-CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC
Q 018860 108 CSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSP-GSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSG 178 (349)
Q Consensus 108 ~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~ 178 (349)
+.|.|. .++|++.|-+.++|+.+..... .+..|. ..+..++. +.+..++.|+++|+.+++||+...
T Consensus 224 ~~~~~n--~i~t~gedctcrvW~~~~~~l~--~y~~h~g~~iw~~~~-~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 224 CCFLPN--RIITVGEDCTCRVWGVNGTQLE--VYDEHSGKGIWKIAV-PIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEeccc--eeEEeccceEEEEEecccceeh--hhhhhhhcceeEEEE-cCCceEEEeeccCcchhhhhhhcc
Confidence 999998 8999999999999987543322 344443 35777775 466778889999999999998653
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=1.5e-11 Score=105.00 Aligned_cols=206 Identities=15% Similarity=0.205 Sum_probs=150.2
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC----CeEEEeecccCCeEEEEECCCCC-eeEEeeCC--C
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDTNAL-RAASASAD--F 83 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D--~ 83 (349)
..++.+++|..+..+ || .|++|-.+|.+.+|..+.+ ..+..+..| .++..+.-++... .+++||.. .
T Consensus 100 ~~~l~~~~I~gl~~~----dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA----DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENIN 173 (412)
T ss_pred ccccccccccchhhc----CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccc
Confidence 345566777777766 45 5777889999999987633 233344444 2355555555444 55568888 8
Q ss_pred eEEEEECCCCCEEEEec----------cCCeEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEE
Q 018860 84 SAKVWDALTGDVLHSFE----------HKHIVRACSFSED--THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTV 151 (349)
Q Consensus 84 ~i~vWd~~~~~~~~~~~----------~~~~v~~~~~s~~--~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~ 151 (349)
.+++||+++.+.+-.-. .+-.++.+.|-+. ...|++++.-+.+|+||...+..+...+.-...+++++
T Consensus 174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 89999998774433222 1234678889887 88999999999999999987777777766666778888
Q ss_pred EEecCCCeEEEEeeCCCeEEEEECCCCceEEe-ecC-CCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEE
Q 018860 152 AWLHSDQTILSTCTDMGGVRLWDVRSGEIVQT-LET-KSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKS 223 (349)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~ 223 (349)
.-.|.+ +++.++...|.+..+|+++++.... +.. .+.++++..+|...+++. +-|+.+||+|+.+.+++..
T Consensus 254 ~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 254 GLTPSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred eecCCC-cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 877655 4566777779999999999987655 443 457899999999888865 5699999999998666543
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=1.4e-10 Score=96.70 Aligned_cols=172 Identities=15% Similarity=0.246 Sum_probs=128.4
Q ss_pred CCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECC-CCCEEEEec---cCCeEEEEEEcCCCCE
Q 018860 41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDAL-TGDVLHSFE---HKHIVRACSFSEDTHL 116 (349)
Q Consensus 41 ~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~-~~~~~~~~~---~~~~v~~~~~s~~~~~ 116 (349)
+.+.|||-....++.++. -..+|.++.+.++. |+.. ....|.||... +-+.++.+. .+....++.-+....+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 358899976667777775 45689999998874 3332 36689999987 445566554 3444444433334455
Q ss_pred EEEEe-CCCeEEEEECCCCCC-CCceeccCCCCeEEEEEecCCCeEEEEeeCCCeE-EEEECCCCceEEeecC---CCCe
Q 018860 117 LLTGG-MEKILRIFDLNRPDA-PPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGV-RLWDVRSGEIVQTLET---KSPV 190 (349)
Q Consensus 117 l~s~~-~d~~i~lwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v-~vwd~~~~~~~~~~~~---~~~v 190 (349)
||--| .-|.|++-|+..... +......|...|.+++.. .++.++|+++..|++ ||||.++|..++.+.. +..+
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 55544 569999999976554 346678899999999865 677888999998985 9999999999998864 3579
Q ss_pred eEEEEcCCCcEEEEec-CCeEEEEecCC
Q 018860 191 TSAEVSQDGRYITTAD-GSTVKFWDANH 217 (349)
Q Consensus 191 ~~~~~~~~~~~l~~~~-d~~i~iwd~~~ 217 (349)
.+++|+|+..+|++++ .|++.++.++.
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999999999998765 59999998865
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=5.4e-11 Score=109.75 Aligned_cols=205 Identities=18% Similarity=0.202 Sum_probs=129.6
Q ss_pred CCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCceeccCCCCeEEEEEecCCC
Q 018860 82 DFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGME---KILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQ 158 (349)
Q Consensus 82 D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (349)
...|.+||...........+...+.+.+|+|||+.|+..+.+ ..|.+||+.+... ..+...++...+..|+|++.
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 346777787544444444567788999999999998877643 4589999975432 22333345566789999888
Q ss_pred eEEEEeeCCCeEEEEE--CCCCceEEeec-CCCCeeEEEEcCCCcEEE-Eec-CCeEEEEec--CCceeeEEEcCCCceE
Q 018860 159 TILSTCTDMGGVRLWD--VRSGEIVQTLE-TKSPVTSAEVSQDGRYIT-TAD-GSTVKFWDA--NHFGLVKSYNMPCTIE 231 (349)
Q Consensus 159 ~~l~~~~~dg~v~vwd--~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~-d~~i~iwd~--~~~~~~~~~~~~~~~~ 231 (349)
.++.+.+.+|...+|. +.++.. ..+. .........|+|||+.++ +++ ++...+|.+ .+....+.........
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcC
Confidence 8877777777766654 554543 3332 233345678999998765 443 455666654 4443322221122223
Q ss_pred EeeecCCCCCEEEEecCCC---eEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCC
Q 018860 232 SASLEPKYGNKFVAGGEDM---WVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDG 292 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~d~---~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg 292 (349)
...|+| ++++++..+.++ .|++||+.+++... +.. ........|+|+++.|+..+.++
T Consensus 332 ~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 332 SPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecC
Confidence 467887 477777665443 69999998876543 222 22346789999999987665444
No 235
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.6e-10 Score=107.04 Aligned_cols=233 Identities=15% Similarity=0.084 Sum_probs=145.4
Q ss_pred eEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCC---CeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEE-
Q 018860 43 PMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASAD---FSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLL- 118 (349)
Q Consensus 43 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D---~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~- 118 (349)
+.++|.+.+. .+.+..|...+....|+||++.|+..+.+ ..|.+||+.+++..........+...+|+|||+.|+
T Consensus 181 l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 181 LQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 5555665443 45555677788999999999998876643 368999999887655444444566789999999876
Q ss_pred EEeCCC--eEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceEEeecCCCCeeEEE
Q 018860 119 TGGMEK--ILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMG--GVRLWDVRSGEIVQTLETKSPVTSAE 194 (349)
Q Consensus 119 s~~~d~--~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~ 194 (349)
+.+.++ .|.+||+.+... +.+..+........|+|++..++.++..+| .|.++|+.+++...............
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~ 337 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPR 337 (430)
T ss_pred EEccCCCceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceE
Confidence 444444 577778765432 223333444556789888777776654443 57888888776543222222234567
Q ss_pred EcCCCcEEEEe-c-CC--eEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCC---CeEEEEeCCCCcEEEEec
Q 018860 195 VSQDGRYITTA-D-GS--TVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGED---MWVRFFDFHTGNEIACNK 267 (349)
Q Consensus 195 ~~~~~~~l~~~-~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~i~v~d~~~~~~~~~~~ 267 (349)
|+|+++.++.. . ++ .|.+||+.+....... .........|+|+ ++.++..+.+ ..|.++++.. .....+.
T Consensus 338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-~~~~~~~p~~spd-g~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~ 414 (430)
T PRK00178 338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT-DTSLDESPSVAPN-GTMLIYATRQQGRGVLMLVSING-RVRLPLP 414 (430)
T ss_pred ECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc-CCCCCCCceECCC-CCEEEEEEecCCceEEEEEECCC-CceEECc
Confidence 99999887543 2 33 5788898876543322 2212234567774 6666655432 3577777743 3333444
Q ss_pred CCCcceeEEEEccC
Q 018860 268 GHHGPVHCVRFSPG 281 (349)
Q Consensus 268 ~h~~~i~~l~~sp~ 281 (349)
.+.+.+...+|+|-
T Consensus 415 ~~~g~~~~p~ws~~ 428 (430)
T PRK00178 415 TAQGEVREPSWSPY 428 (430)
T ss_pred CCCCCcCCCccCCC
Confidence 45556667777763
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.44 E-value=3.3e-11 Score=98.51 Aligned_cols=155 Identities=18% Similarity=0.305 Sum_probs=104.8
Q ss_pred eEEEeecCCCccEEEEEec---CC-------CeEEEeCC-CCCeEEEeec-ccCCeEEEEECCCCCeeEE--eeCCCeEE
Q 018860 21 DLFYSPITPDGFFLISASK---DS-------SPMLRNGE-TGDWIGTFEG-HKGAVWSCCLDTNALRAAS--ASADFSAK 86 (349)
Q Consensus 21 ~~~fs~~~~~~~~l~s~s~---d~-------~i~iw~~~-~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s--~s~D~~i~ 86 (349)
.+.|+| +|.+|+.-.. |. ...+|... ....+..+.- ..++|.+++|+|++..++. |..++.|.
T Consensus 10 ~~~W~~---~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQP---SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEecc---cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 455664 7877765443 22 23444432 2233444443 3457999999999998654 44678999
Q ss_pred EEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEE
Q 018860 87 VWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGME---KILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILST 163 (349)
Q Consensus 87 vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 163 (349)
+||++ ++.+..+. ...+..+.|+|+|++|+.++.+ |.+.+||++..+.. .......+..+.|+|++..++++
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i---~~~~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI---STFEHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe---eccccCcEEEEEEcCCCCEEEEE
Confidence 99996 66677665 4567889999999999998754 66999999743321 12223357899999988777765
Q ss_pred eeC-----CCeEEEEECCCCceEEee
Q 018860 164 CTD-----MGGVRLWDVRSGEIVQTL 184 (349)
Q Consensus 164 ~~~-----dg~v~vwd~~~~~~~~~~ 184 (349)
.+. |+.++||+.. |+.+...
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEec
Confidence 543 6889999974 6655443
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.2e-10 Score=107.79 Aligned_cols=233 Identities=15% Similarity=0.105 Sum_probs=141.1
Q ss_pred CeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCC---CeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEE
Q 018860 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASAD---FSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLL 118 (349)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D---~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (349)
.+.++|..... .+.+-.+...+.+..|+|||+.|+-.+.+ ..|.+||+.+++.......+......+|+|||+.|+
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 34445654433 24455566778899999999988876543 258889998887544333333445789999999776
Q ss_pred E-EeCCCe--EEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceEEeecCCCCeeEE
Q 018860 119 T-GGMEKI--LRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMG--GVRLWDVRSGEIVQTLETKSPVTSA 193 (349)
Q Consensus 119 s-~~~d~~--i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~ 193 (349)
. .+.++. |.++|+.+.. .+.+..+........|+|++..++.++..++ .|.++|+.+++..............
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~ 355 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGG 355 (448)
T ss_pred EEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCe
Confidence 4 455665 5666765432 2233333344567789988877776665444 5777788877654322222223346
Q ss_pred EEcCCCcEEEEe-c-CC--eEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEec-CCC--eEEEEeCCCCcEEEEe
Q 018860 194 EVSQDGRYITTA-D-GS--TVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGG-EDM--WVRFFDFHTGNEIACN 266 (349)
Q Consensus 194 ~~~~~~~~l~~~-~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~--~i~v~d~~~~~~~~~~ 266 (349)
.|+|||++++.. . ++ .|.++|+.+........ ........|+|+ ++.++..+ .++ .+++++. ++.....+
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~-~~~d~~ps~spd-G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS-TRLDESPSVAPN-GTMVIYSTTYQGKQVLAAVSI-DGRFKARL 432 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC-CCCCCCceECCC-CCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence 899999887543 2 34 45557777665432221 111123467775 66655443 343 4777776 45555556
Q ss_pred cCCCcceeEEEEcc
Q 018860 267 KGHHGPVHCVRFSP 280 (349)
Q Consensus 267 ~~h~~~i~~l~~sp 280 (349)
..+.+.+...+|+|
T Consensus 433 ~~~~g~~~~p~Wsp 446 (448)
T PRK04792 433 PAGQGEVKSPAWSP 446 (448)
T ss_pred cCCCCCcCCCccCC
Confidence 55666677778887
No 238
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.44 E-value=3.2e-09 Score=93.55 Aligned_cols=255 Identities=15% Similarity=0.143 Sum_probs=157.9
Q ss_pred CCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeC----------CCeEEEEECCCCCEEEEeccCCe------
Q 018860 41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASA----------DFSAKVWDALTGDVLHSFEHKHI------ 104 (349)
Q Consensus 41 ~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~----------D~~i~vWd~~~~~~~~~~~~~~~------ 104 (349)
+++.+.|.++.+.+.++..-..+-. + +++|++.|..+.. +..|.+||..+++.+..+..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 7899999999999999975444433 4 9999998777665 78999999999999988874332
Q ss_pred --EEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC-CCc
Q 018860 105 --VRACSFSEDTHLLLTGG-M-EKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR-SGE 179 (349)
Q Consensus 105 --v~~~~~s~~~~~l~s~~-~-d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~ 179 (349)
....+++|||++|+... . +..+-+.|+...+... .+. .++...-... .....++-|.| |.....-+. +|+
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~-ei~-vp~~~~vy~t--~e~~~~~~~~D-g~~~~v~~d~~g~ 179 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR-MMD-VPDCYHIFPT--ANDTFFMHCRD-GSLAKVGYGTKGN 179 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE-EEe-CCCCcEEEEe--cCCccEEEeec-CceEEEEecCCCc
Confidence 34889999999998776 3 6889999987543211 111 1121111111 11112222332 333322221 122
Q ss_pred e-EEe---ecC-CCCe-eEEEEcC-CCcEEEEecCCeEEEEecCCc-----eeeEEEc--------CCCceEEeeecCCC
Q 018860 180 I-VQT---LET-KSPV-TSAEVSQ-DGRYITTADGSTVKFWDANHF-----GLVKSYN--------MPCTIESASLEPKY 239 (349)
Q Consensus 180 ~-~~~---~~~-~~~v-~~~~~~~-~~~~l~~~~d~~i~iwd~~~~-----~~~~~~~--------~~~~~~~~~~~~~~ 239 (349)
. ... +.. ..++ ..-.+.+ +++++..+..|+|.+.|+... .....+. .+.....+++++..
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 1 111 111 0000 0002344 788877666699999995432 2222221 12334458888764
Q ss_pred CCEEEEe---------cCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCC-eEEEec-CCCCEEEecCCCCC
Q 018860 240 GNKFVAG---------GEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGE-SYASGS-EDGTIRIWQTGPVT 303 (349)
Q Consensus 240 ~~~~~~~---------~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~sgs-~Dg~v~vW~~~~~~ 303 (349)
++.++.. ...+.|.++|..+++.+..+.- ...++.++|+|+++ +|++.. .++.|.+.|+....
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 4444433 1236899999999999887653 34789999999999 777665 68889999986543
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.3e-10 Score=103.57 Aligned_cols=274 Identities=18% Similarity=0.236 Sum_probs=177.6
Q ss_pred ceeeEEEeecCCCccEEEE-----EecCCC-----eEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEE
Q 018860 18 PVVDLFYSPITPDGFFLIS-----ASKDSS-----PMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKV 87 (349)
Q Consensus 18 ~v~~~~fs~~~~~~~~l~s-----~s~d~~-----i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~v 87 (349)
.++++.||| .|.||.+ ...|++ +++|+.+++.....+..-...-|+..|+.|..+ +.--..+.+.+
T Consensus 75 ~~~~L~fSP---~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f 150 (566)
T KOG2315|consen 75 KTYDLLFSP---KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQF 150 (566)
T ss_pred eeeeeeecc---cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhh-hhhhhcceEEE
Confidence 577888997 6778753 233333 458888875544455433222378889888753 32233456999
Q ss_pred EECCCCCEEEEeccCCeEEEEEEcCCC--CEEEE-----EeCCCeEEEEECCCCCC--CCceeccCCCCeEEEEEecCCC
Q 018860 88 WDALTGDVLHSFEHKHIVRACSFSEDT--HLLLT-----GGMEKILRIFDLNRPDA--PPREVDRSPGSVRTVAWLHSDQ 158 (349)
Q Consensus 88 Wd~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s-----~~~d~~i~lwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 158 (349)
|++.+.+.....-|...|..+.+||.. ..+++ .|.-..+|+|.+.-... ....-.--...-..+.|.+.+.
T Consensus 151 ~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 151 YDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT 230 (566)
T ss_pred EecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCc
Confidence 998875544444466778999999873 34443 46667899998762111 1100001112234567887666
Q ss_pred eEEEEeeC-----------CCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEE-E-ec-CCeEEEEecCCceeeEEE
Q 018860 159 TILSTCTD-----------MGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYIT-T-AD-GSTVKFWDANHFGLVKSY 224 (349)
Q Consensus 159 ~~l~~~~~-----------dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~~-d~~i~iwd~~~~~~~~~~ 224 (349)
-+|+-++. +.++++.++....+.-.+...++|.++.|+|+++-++ + +- =..+.|||++.. ++ +
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v--~ 307 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PV--F 307 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-Ee--E
Confidence 55433221 2378888888556666777788999999999996543 3 22 478999998743 22 3
Q ss_pred cCCCc-eEEeeecCCCCCEEEEecC---CCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEec------CCCCE
Q 018860 225 NMPCT-IESASLEPKYGNKFVAGGE---DMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS------EDGTI 294 (349)
Q Consensus 225 ~~~~~-~~~~~~~~~~~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs------~Dg~v 294 (349)
..+.. -..+-|+| .+++++.+|. -|.+.+||+.+.+++..+..-.. +-..|+|||++|+|+. .|+.+
T Consensus 308 df~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~ 384 (566)
T KOG2315|consen 308 DFPEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGI 384 (566)
T ss_pred eCCCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCe
Confidence 33333 34566676 4888887764 47999999999888877664433 4578999999998765 38899
Q ss_pred EEecCCC
Q 018860 295 RIWQTGP 301 (349)
Q Consensus 295 ~vW~~~~ 301 (349)
+||+...
T Consensus 385 KiwhytG 391 (566)
T KOG2315|consen 385 KIWHYTG 391 (566)
T ss_pred EEEEecC
Confidence 9999753
No 240
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.42 E-value=1.9e-11 Score=101.82 Aligned_cols=199 Identities=18% Similarity=0.244 Sum_probs=150.7
Q ss_pred CCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--CCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC-CC
Q 018860 102 KHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPD--APPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR-SG 178 (349)
Q Consensus 102 ~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~ 178 (349)
..+|++.+|++|+..++.+-....+.+|.....+ ...+.+..|...++.+.|.|..++++ +|+.|..-++|... .+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCccccccCCCC
Confidence 4689999999999999999999999999987665 34567788999999999998776655 77777889999984 45
Q ss_pred ceEEe---ecCCCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceee-----EEEcCCCceEEeeecCCCCCEEEEecCC
Q 018860 179 EIVQT---LETKSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLV-----KSYNMPCTIESASLEPKYGNKFVAGGED 249 (349)
Q Consensus 179 ~~~~~---~~~~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d 249 (349)
+...+ +..+...+++.|+|..+.++. +..+.|.+|=......= ....+...+.++.|+|. +-.+++|+.|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn-nVLlaaGs~D 167 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN-NVLLAAGSTD 167 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC-cceecccccC
Confidence 54433 345677899999998876655 45678888765433211 11233456789999985 6678889999
Q ss_pred CeEEEEeCC-----C-------------CcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 250 MWVRFFDFH-----T-------------GNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 250 ~~i~v~d~~-----~-------------~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
+.+|+|..- . |++..++....++|..+.|+|+|..|+=.+.|.++.+=|...+
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 999999742 1 1222233345689999999999999999999999999876543
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=2.3e-10 Score=105.64 Aligned_cols=206 Identities=17% Similarity=0.186 Sum_probs=135.5
Q ss_pred CCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCceeccCCCCeEEEEEecCCC
Q 018860 82 DFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGME---KILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQ 158 (349)
Q Consensus 82 D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (349)
...|.++|..++.......+...+...+|+|+|++|+.+..+ ..|.+||+.+... ..+....+...+..|+|++.
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 346888888655555555566678899999999999877643 4799999875432 22333445566788998877
Q ss_pred eEEEEeeCCC--eEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEE-Eec-CC--eEEEEecCCceeeEEEcCCCceEE
Q 018860 159 TILSTCTDMG--GVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYIT-TAD-GS--TVKFWDANHFGLVKSYNMPCTIES 232 (349)
Q Consensus 159 ~~l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~ 232 (349)
.++.+...++ .|.+||+.++................|+|+++.|+ ++. ++ .|.++|+.+....+..........
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~ 326 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNAS 326 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccC
Confidence 7776655434 68999998876544333333345678999998764 443 22 577788876654433323333445
Q ss_pred eeecCCCCCEEEEecCCC---eEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCC
Q 018860 233 ASLEPKYGNKFVAGGEDM---WVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDG 292 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~d~---~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg 292 (349)
..++|. +++++.++.++ .|.+||+.++... .+... ......+|+|++++|+..+.++
T Consensus 327 ~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 327 PSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred eEECCC-CCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 677774 67777776665 7899998875543 22222 2345568999999888766654
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.3e-11 Score=102.02 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=131.9
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC----Cc
Q 018860 104 IVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS----GE 179 (349)
Q Consensus 104 ~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~----~~ 179 (349)
-++.++|++.-..++++..|.+||+|+-.. +.+..........+++++|-|-...-++.+.. +.|.+|.... ++
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc
Confidence 478899999777789999999999999654 33333334455679999999988877777766 7899997532 11
Q ss_pred e--------EEee--cCCCCeeEEEEcCCCcEEEEe--cCCeEEEEecCCceeeEEEc-CCCceEEeeecCCCCCEEEEe
Q 018860 180 I--------VQTL--ETKSPVTSAEVSQDGRYITTA--DGSTVKFWDANHFGLVKSYN-MPCTIESASLEPKYGNKFVAG 246 (349)
Q Consensus 180 ~--------~~~~--~~~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 246 (349)
. .+.+ +.+.+|+++.+++||..++++ .+..|.+||..++..+.... ....+.-+.|+|+ +++|+++
T Consensus 178 ~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd-gd~lfaA 256 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD-GDVLFAA 256 (445)
T ss_pred ccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC-CCEEEEe
Confidence 1 1112 345689999999999777654 37899999999877655442 2345667889985 8999999
Q ss_pred cCCCeEEEEeCCCCc-EEEEecCCCcceeEEEEccCCCeEE-EecC
Q 018860 247 GEDMWVRFFDFHTGN-EIACNKGHHGPVHCVRFSPGGESYA-SGSE 290 (349)
Q Consensus 247 ~~d~~i~v~d~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~-sgs~ 290 (349)
+-|+..++|+....- .....- -.+.|...+|+|.|.+|. +.+.
T Consensus 257 t~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred cccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcC
Confidence 999999999654322 222222 345899999999998764 4443
No 243
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.41 E-value=4.2e-11 Score=106.14 Aligned_cols=192 Identities=19% Similarity=0.276 Sum_probs=126.4
Q ss_pred CCCCeeEEeeCCCeEEEEECCCCCEEEEec-----cCCeEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCceeccC
Q 018860 71 TNALRAASASADFSAKVWDALTGDVLHSFE-----HKHIVRACSFSEDT-HLLLTGGMEKILRIFDLNRPDAPPREVDRS 144 (349)
Q Consensus 71 ~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-----~~~~v~~~~~s~~~-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~ 144 (349)
+.+.-|+.|=.-|.|.+.|....+..+.+. .+..|+++.|-|.+ ..++.+-.+|.+.+||...... .
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~-------~ 255 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG-------A 255 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-------C
Confidence 455567777777788887765533322222 34679999998854 4556667899999998632110 0
Q ss_pred CCCeEEEEEecCCCeEEEEeeCCCeEEEEEC-CCCceEEee-cCCCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceee
Q 018860 145 PGSVRTVAWLHSDQTILSTCTDMGGVRLWDV-RSGEIVQTL-ETKSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLV 221 (349)
Q Consensus 145 ~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~ 221 (349)
..+. ... .+.... ++ |..|-- .+..++... .....++..+|+|||++|++ +.||.+||||..+..++
T Consensus 256 t~p~-~~~-~k~~~~-f~-------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TAPS-YQA-LKDGDQ-FA-------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL 325 (636)
T ss_pred CCCc-ccc-cCCCCe-eE-------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHH
Confidence 0000 000 111111 11 111111 111122221 23447889999999999876 67999999999887654
Q ss_pred EEE-cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEcc
Q 018860 222 KSY-NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSP 280 (349)
Q Consensus 222 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp 280 (349)
-.. ..-..+.+++|+|+ ++++++|++|.-|.||.+...+.+..-.+|..||..|+|.|
T Consensus 326 g~mkSYFGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 326 GVMKSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHhhccceEEEEEcCC-ccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 332 12245788999994 99999999999999999999999999999999999999983
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=6.5e-09 Score=93.24 Aligned_cols=264 Identities=13% Similarity=0.136 Sum_probs=165.5
Q ss_pred EEEecC----CCeEEEeC--CCCCe--EEEeecccCCeEEEEECCCCCeeEEeeC----CCeEEEEECCCC--CE--EEE
Q 018860 35 ISASKD----SSPMLRNG--ETGDW--IGTFEGHKGAVWSCCLDTNALRAASASA----DFSAKVWDALTG--DV--LHS 98 (349)
Q Consensus 35 ~s~s~d----~~i~iw~~--~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~----D~~i~vWd~~~~--~~--~~~ 98 (349)
+.|+.. +.|..|.. +++++ +..+.. ...-.-+++++++++|.+... ++.|..|.+... .. +..
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~-~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE-GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE-SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC-CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 345555 46666655 44543 222222 222345789999999888876 578999987653 22 223
Q ss_pred ec-cCCeEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCCCCce--ec-----------cCCCCeEEEEEecCCCeEEEE
Q 018860 99 FE-HKHIVRACSFSEDTHLLLTGG-MEKILRIFDLNRPDAPPRE--VD-----------RSPGSVRTVAWLHSDQTILST 163 (349)
Q Consensus 99 ~~-~~~~v~~~~~s~~~~~l~s~~-~d~~i~lwd~~~~~~~~~~--~~-----------~~~~~i~~~~~~~~~~~~l~~ 163 (349)
.. .......++++|++++|+++. .++.+.++++......... .. ........+.+.|++..++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 33 344556799999999999987 5899999999764322111 11 112346778888888877776
Q ss_pred eeCCCeEEEEECCCCc--eE--E--eecCCCCeeEEEEcCCCcEEEEe--cCCeEEEEecC--Cce--eeEEEcC-----
Q 018860 164 CTDMGGVRLWDVRSGE--IV--Q--TLETKSPVTSAEVSQDGRYITTA--DGSTVKFWDAN--HFG--LVKSYNM----- 226 (349)
Q Consensus 164 ~~~dg~v~vwd~~~~~--~~--~--~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~--~~~--~~~~~~~----- 226 (349)
......|.+|++.... .. . .++....-+.+.|+|+++++... .+++|.++++. ++. .+.....
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 6555689999987654 32 2 23445567889999999876543 37899999887 332 2222221
Q ss_pred --CCceEEeeecCCCCCEEE-EecCCCeEEEEeCC--CCcE--EEEecCCCcceeEEEEccCCCeEEEec-CCCCEEEec
Q 018860 227 --PCTIESASLEPKYGNKFV-AGGEDMWVRFFDFH--TGNE--IACNKGHHGPVHCVRFSPGGESYASGS-EDGTIRIWQ 298 (349)
Q Consensus 227 --~~~~~~~~~~~~~~~~~~-~~~~d~~i~v~d~~--~~~~--~~~~~~h~~~i~~l~~sp~~~~l~sgs-~Dg~v~vW~ 298 (349)
......+.++|+ +++++ +....+.|.+|++. +++. +..........+.++++|+|++|+.+. .++.|.+|+
T Consensus 242 ~~~~~~~~i~ispd-g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPD-GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TT-SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecC-CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 113556778885 66554 55678899999983 3333 233333334578999999999987655 677899997
Q ss_pred CC
Q 018860 299 TG 300 (349)
Q Consensus 299 ~~ 300 (349)
++
T Consensus 321 ~d 322 (345)
T PF10282_consen 321 ID 322 (345)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=2.4e-08 Score=89.62 Aligned_cols=255 Identities=16% Similarity=0.208 Sum_probs=160.3
Q ss_pred eeEEEeecCCCccEEEEEecC----CCeEEEeCCC--CC--eEEEeecccCCeEEEEECCCCCeeEEee-CCCeEEEEEC
Q 018860 20 VDLFYSPITPDGFFLISASKD----SSPMLRNGET--GD--WIGTFEGHKGAVWSCCLDTNALRAASAS-ADFSAKVWDA 90 (349)
Q Consensus 20 ~~~~fs~~~~~~~~l~s~s~d----~~i~iw~~~~--~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~D~~i~vWd~ 90 (349)
.-++++| ++++|.+.... +.+..|.... ++ .+.........-..+++++++++|+++. .+++|.++++
T Consensus 40 s~l~~~~---~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 40 SWLAVSP---DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp CCEEE-T---TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ceEEEEe---CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 4566765 88899888774 5677776543 33 3334432223345689999999999988 4999999999
Q ss_pred CC-CCEEE---Eecc-----------CCeEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCCCCc---ee-ccCCCCeEE
Q 018860 91 LT-GDVLH---SFEH-----------KHIVRACSFSEDTHLLLTGG-MEKILRIFDLNRPDAPPR---EV-DRSPGSVRT 150 (349)
Q Consensus 91 ~~-~~~~~---~~~~-----------~~~v~~~~~s~~~~~l~s~~-~d~~i~lwd~~~~~~~~~---~~-~~~~~~i~~ 150 (349)
.. |.... .+.| ..-..++.|+|+++++++.. ....|.+|+++....... .+ .......+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 76 43322 2221 23478899999999888764 345689999875542111 11 223345788
Q ss_pred EEEecCCCeEEEEeeCCCeEEEEECC--CCce--EEeecC-------CCCeeEEEEcCCCcEEEEec--CCeEEEEecCC
Q 018860 151 VAWLHSDQTILSTCTDMGGVRLWDVR--SGEI--VQTLET-------KSPVTSAEVSQDGRYITTAD--GSTVKFWDANH 217 (349)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~v~vwd~~--~~~~--~~~~~~-------~~~v~~~~~~~~~~~l~~~~--d~~i~iwd~~~ 217 (349)
+.|+|++..+.+....+++|.++++. ++.. ++.+.. ......+.++||+++|.++. .++|.+|++..
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 99999888888888888999999987 4432 222221 12467899999999987654 67999999842
Q ss_pred --c--eeeEEEcC-CCceEEeeecCCCCCEEEEe-cCCCeEEEEeC--CCCcEEEEec-CCCcceeEEEE
Q 018860 218 --F--GLVKSYNM-PCTIESASLEPKYGNKFVAG-GEDMWVRFFDF--HTGNEIACNK-GHHGPVHCVRF 278 (349)
Q Consensus 218 --~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~d~~i~v~d~--~~~~~~~~~~-~h~~~i~~l~~ 278 (349)
+ ..+..+.. ...+..+.++|. +++++++ ..++.|.+|++ .+|....... ..-....|+.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~-g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSPD-GRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-TT-SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 2 33334433 234678888886 6666655 57789999976 4665543321 12234455554
No 246
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.36 E-value=1e-11 Score=100.80 Aligned_cols=140 Identities=18% Similarity=0.271 Sum_probs=110.3
Q ss_pred EEEEEecCCCeEEEeCCCCCeEE----------EeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC--CEE----
Q 018860 33 FLISASKDSSPMLRNGETGDWIG----------TFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG--DVL---- 96 (349)
Q Consensus 33 ~l~s~s~d~~i~iw~~~~~~~~~----------~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~--~~~---- 96 (349)
+|++|-.+|.+.+||..++..+. -...|+.+|.++.+.+....=++|+.+..+-+|+++-. .+.
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 45677788999999998874433 33469999999999987777799999999999998643 222
Q ss_pred EEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 018860 97 HSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDV 175 (349)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~ 175 (349)
+.+++ ..|..+...||++.+||+|+|+.||+|+.++.. +...+.-|.+.|++++|+|+ ..+++.++.|+.|-+|++
T Consensus 247 ~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd-~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPD-CELMAAASKDARISLWKL 322 (323)
T ss_pred EEecC-CCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCC-CchhhhccCCceEEeeec
Confidence 22223 357889999999999999999999999987643 34556678899999999875 456778888899999986
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.2e-09 Score=99.45 Aligned_cols=211 Identities=14% Similarity=0.127 Sum_probs=132.0
Q ss_pred eEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeE
Q 018860 84 SAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGME---KILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTI 160 (349)
Q Consensus 84 ~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (349)
.|.++|..++.......+...+....|+|||+.|+..+.+ ..|.+|++.+... +.+...++......|+|++..+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCEE
Confidence 4778888766555555677788999999999998876643 4688889865432 2222233445568899888877
Q ss_pred EEEeeCCC--eEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEE-Eec-C--CeEEEEecCCceeeEEEcCCCceEEee
Q 018860 161 LSTCTDMG--GVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYIT-TAD-G--STVKFWDANHFGLVKSYNMPCTIESAS 234 (349)
Q Consensus 161 l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~ 234 (349)
+.+...+| .|.+||+.+++...............|+||++.++ ++. + ..|.++|+.++...+............
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~ 337 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPR 337 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceE
Confidence 76665545 68888998887544333333455678999998664 343 2 357777877665433322112223456
Q ss_pred ecCCCCCEEEEecC-CC--eEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecC-CCC--EEEecC
Q 018860 235 LEPKYGNKFVAGGE-DM--WVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSE-DGT--IRIWQT 299 (349)
Q Consensus 235 ~~~~~~~~~~~~~~-d~--~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~-Dg~--v~vW~~ 299 (349)
|+|+ ++.++..+. ++ .|.++|+.+++... +. +........|+|+|++++-.+. +|. |.++++
T Consensus 338 ~Spd-g~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 338 LSAD-GKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred ECCC-CCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 7775 666665543 33 68889998876532 22 1122235689999998875443 444 444444
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.28 E-value=8e-11 Score=117.25 Aligned_cols=196 Identities=13% Similarity=0.146 Sum_probs=149.6
Q ss_pred EeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec--cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 018860 56 TFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE--HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNR 133 (349)
Q Consensus 56 ~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~ 133 (349)
.++.|-..|.++.-+|...+.+||+.||.|++|.-..++.+..+. .+..|+.+.|+..|+.+..+..||.+.+|...
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 345566778888888988999999999999999988787777665 33678899999999999999999999999986
Q ss_pred CCCCCceeccCCCCeEEEEEecCCCeEEEEe---eCCCeEEEEECCC--CceEEeecCCCCeeEEEEcCCCcEEEE-ecC
Q 018860 134 PDAPPREVDRSPGSVRTVAWLHSDQTILSTC---TDMGGVRLWDVRS--GEIVQTLETKSPVTSAEVSQDGRYITT-ADG 207 (349)
Q Consensus 134 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~---~~dg~v~vwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d 207 (349)
..+....+.|........|.. .+++++ ++++.+.+||..- +...-...|...++++++.|..+++.+ +.+
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 223334456666777777765 344443 4678999999743 222222456677899999999887654 569
Q ss_pred CeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEe
Q 018860 208 STVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACN 266 (349)
Q Consensus 208 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~ 266 (349)
|.|.+||++..++++.++. +. ...+|++|+..|.|+||++..-..+..+
T Consensus 2358 G~v~l~D~rqrql~h~~~~--------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA--------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh--------hh--hhheeeccCcccceEEEEccccchhhcC
Confidence 9999999998888776654 22 3678999999999999999876665544
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=5.6e-09 Score=96.83 Aligned_cols=211 Identities=11% Similarity=0.075 Sum_probs=128.8
Q ss_pred eEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeE
Q 018860 84 SAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGME---KILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTI 160 (349)
Q Consensus 84 ~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (349)
.|.++|...............+....|+|||+.|+..+.+ ..|.+||+.+... ..+...++......|+|++..+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCEE
Confidence 6777787665544445566788899999999988876542 2577888765432 1222223334467899988888
Q ss_pred EEEeeCCC--eEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEE-ec-CC--eEEEEecCCceeeEEEcCCCceEEee
Q 018860 161 LSTCTDMG--GVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITT-AD-GS--TVKFWDANHFGLVKSYNMPCTIESAS 234 (349)
Q Consensus 161 l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~ 234 (349)
+.+...+| .|.+||+.+++...............|+||++.++. +. ++ .|.++|+.+....+............
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~ 356 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGS 356 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCee
Confidence 77666656 488889988775443333334567889999987654 33 33 56667776665443321122223457
Q ss_pred ecCCCCCEEEEecC-CC--eEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEe-cCCCC--EEEecC
Q 018860 235 LEPKYGNKFVAGGE-DM--WVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASG-SEDGT--IRIWQT 299 (349)
Q Consensus 235 ~~~~~~~~~~~~~~-d~--~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sg-s~Dg~--v~vW~~ 299 (349)
|+|+ +++++..+. ++ .|.++|+.+++.. .+... .......|+|+|+.|+-. ..+|. +.+++.
T Consensus 357 ~SpD-G~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 357 ITPD-GRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred ECCC-CCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 7775 666665443 33 5666788777643 22221 122345899999987644 34454 455554
No 250
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=3.8e-11 Score=106.95 Aligned_cols=278 Identities=18% Similarity=0.248 Sum_probs=174.6
Q ss_pred ceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCC-------CCCeEEEeecccCCeEEEEECCCCCeeEEeeC
Q 018860 9 PLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGE-------TGDWIGTFEGHKGAVWSCCLDTNALRAASASA 81 (349)
Q Consensus 9 ~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 81 (349)
.+.|.||+..|+.++- ++.. +-++|+|+|.++++|... +..+..++..|+.+|..+.|-.+-++++++
T Consensus 728 L~nf~GH~~~iRai~A--idNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAA--IDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-- 802 (1034)
T ss_pred eecccCcHHHhHHHHh--cccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence 3456799999987742 3333 357799999999999854 335788999999999999999988877754
Q ss_pred CCeEEEEECCCCCEEEEec----cC--CeEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCCCCCc----eeccCCCCeEE
Q 018860 82 DFSAKVWDALTGDVLHSFE----HK--HIVRACSFSEDTHLLLT-GGMEKILRIFDLNRPDAPPR----EVDRSPGSVRT 150 (349)
Q Consensus 82 D~~i~vWd~~~~~~~~~~~----~~--~~v~~~~~s~~~~~l~s-~~~d~~i~lwd~~~~~~~~~----~~~~~~~~i~~ 150 (349)
|+-|.+||.--|..+.... |. ..|.++. +-+...++. ++...+++++|-+..+.... ...+..+.+++
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 7889999987676555332 22 2233332 223444444 47899999999875443211 11223345677
Q ss_pred EEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCC-CeeEEEEcCCCcEEE-EecCCeEEE-EecCCceeeEEEcCC
Q 018860 151 VAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKS-PVTSAEVSQDGRYIT-TADGSTVKF-WDANHFGLVKSYNMP 227 (349)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~-~~~d~~i~i-wd~~~~~~~~~~~~~ 227 (349)
++.-++++ .++.+-..|+|.+.|.|+|+.+....... ....++ .|..+.++ +..|.++.+ |-...+....+..-+
T Consensus 882 iaVa~~GN-~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 882 IAVADKGN-KLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred EEeccCcc-hhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 77665554 45556666999999999999887664322 121221 34445544 345777877 876554433222222
Q ss_pred CceEEeeecCCCCCEEEEecCCCeEEEEeCCC-C---cEEEEec--CCCcceeEEEEccCCCeEEEecCCCCEEE
Q 018860 228 CTIESASLEPKYGNKFVAGGEDMWVRFFDFHT-G---NEIACNK--GHHGPVHCVRFSPGGESYASGSEDGTIRI 296 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~---~~~~~~~--~h~~~i~~l~~sp~~~~l~sgs~Dg~v~v 296 (349)
+...-|...-+..++++...+.+.+|--.. . ..+..++ ...+..++++.-|-..-+..|...|.|.+
T Consensus 960 --pepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 --PEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred --CcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 222223333356678888778888884211 0 1112222 23466788888887777777999888875
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=4.2e-11 Score=119.20 Aligned_cols=196 Identities=18% Similarity=0.283 Sum_probs=142.3
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeec-ccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCE
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDTNALRAASASADFSAKVWDALTGDV 95 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~ 95 (349)
..|.++.-+| ...+-++|+.||.+++|....+..+-.++- -...|+.+.|+.+|..+..+..||.+-+|.+.....
T Consensus 2209 ~~v~r~~sHp---~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~ 2285 (2439)
T KOG1064|consen 2209 ENVRRMTSHP---SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY 2285 (2439)
T ss_pred CceeeecCCC---CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcce
Confidence 4555555454 444778999999999998777776666652 237789999999999999999999999999873322
Q ss_pred EEEeccCCeEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE
Q 018860 96 LHSFEHKHIVRACSFSEDTHLLLTGG---MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRL 172 (349)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~s~~---~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~v 172 (349)
..--.|........|-. ..+++++ .++.+.+||...+......-..|.+..+++++.|..+ ++.+|+.+|.|++
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisggr~G~v~l 2362 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISGGRKGEVCL 2362 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEecCCcCcEEE
Confidence 22234666666666654 5566654 5788999997654433333367888999999887654 5568888899999
Q ss_pred EECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcC
Q 018860 173 WDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNM 226 (349)
Q Consensus 173 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 226 (349)
||++..+..++++. +.....+++++..|.++||++.....++.+..
T Consensus 2363 ~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred eehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccchhhcCch
Confidence 99998887776654 23233455566789999999998877776654
No 252
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.26 E-value=2.5e-08 Score=90.83 Aligned_cols=258 Identities=14% Similarity=0.072 Sum_probs=159.2
Q ss_pred ccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEE
Q 018860 31 GFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSF 110 (349)
Q Consensus 31 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~ 110 (349)
+..+..++.++.+.-+|..+|+.+..++........... ++..++.++.|+.+..+|..+|+.+-.......+.+...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 457888889999999999999887666544332222222 355778888999999999999988776654443332111
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCe-----EEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec
Q 018860 111 SEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSV-----RTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE 185 (349)
Q Consensus 111 s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 185 (349)
. .+..++.++.++.+..||..+.+...+ ........ .+.... ++.+ ..+..+|.+..+|+++|+.+-...
T Consensus 143 v-~~~~v~v~~~~g~l~a~d~~tG~~~W~-~~~~~~~~~~~~~~sp~~~--~~~v-~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 143 V-ANGLVVVRTNDGRLTALDAATGERLWT-YSRVTPALTLRGSASPVIA--DGGV-LVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred E-ECCEEEEECCCCeEEEEEcCCCceeeE-EccCCCceeecCCCCCEEE--CCEE-EEECCCCEEEEEEccCCCEeeeec
Confidence 1 245677778899999999876543221 11111000 011111 2334 345556899999999997654332
Q ss_pred CCCC-----------e-eEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEE
Q 018860 186 TKSP-----------V-TSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVR 253 (349)
Q Consensus 186 ~~~~-----------v-~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 253 (349)
...+ + ....+ .++.+++++.++.+..||..+++.+........ ..... .+..++.++.|+.++
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVVV 292 (377)
T ss_pred cccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeEE
Confidence 1100 0 01111 245556667789999999988876655543221 11111 256788888999999
Q ss_pred EEeCCCCcEEEEecCCCc-ceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 254 FFDFHTGNEIACNKGHHG-PVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 254 v~d~~~~~~~~~~~~h~~-~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
.+|..+++.+-....... ...+... .+..|+.++.||.|.++|....
T Consensus 293 ~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 293 ALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred EEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 999999987644321111 1122222 4668889999999999987544
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.5e-08 Score=93.37 Aligned_cols=237 Identities=11% Similarity=0.018 Sum_probs=139.8
Q ss_pred eEEEeCCCCCeEEEeecccCCeEEEEECCCCCe--e-EEeeCCC--eEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEE
Q 018860 43 PMLRNGETGDWIGTFEGHKGAVWSCCLDTNALR--A-ASASADF--SAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLL 117 (349)
Q Consensus 43 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l-~s~s~D~--~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 117 (349)
|.+.|.+.++. +.+......+.+-.|+|||+. + .+...++ .|.+.++.+++.......+......+|+|||+.|
T Consensus 167 l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~L 245 (428)
T PRK01029 167 LWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLL 245 (428)
T ss_pred EEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEE
Confidence 44445543333 334444555677799999874 2 2443343 5777788888765554445556678999999888
Q ss_pred EEEeC-----CCeEEEEECCCCC--CCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE--ECCC-CceEEeec-C
Q 018860 118 LTGGM-----EKILRIFDLNRPD--APPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW--DVRS-GEIVQTLE-T 186 (349)
Q Consensus 118 ~s~~~-----d~~i~lwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vw--d~~~-~~~~~~~~-~ 186 (349)
+..+. +-.+..|++.... ...+.............|+|++..++.++..+|...+| ++.. +.....+. .
T Consensus 246 af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~ 325 (428)
T PRK01029 246 AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK 325 (428)
T ss_pred EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC
Confidence 76542 3334457765421 11122222223345678998888777766555655555 4432 22223332 2
Q ss_pred CCCeeEEEEcCCCcEEEE-ec---CCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEE-ecC--CCeEEEEeCCC
Q 018860 187 KSPVTSAEVSQDGRYITT-AD---GSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVA-GGE--DMWVRFFDFHT 259 (349)
Q Consensus 187 ~~~v~~~~~~~~~~~l~~-~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--d~~i~v~d~~~ 259 (349)
...+....|+|||+.|+. +. ...|.+||+.++................|.|+ ++.++. +.. ...|+++|+..
T Consensus 326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpD-G~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAID-SLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCC
Confidence 334567889999987754 32 24699999988766544333334456778875 666654 332 45788899887
Q ss_pred CcEEEEecCCCcceeEEEEccCC
Q 018860 260 GNEIACNKGHHGPVHCVRFSPGG 282 (349)
Q Consensus 260 ~~~~~~~~~h~~~i~~l~~sp~~ 282 (349)
++...... ..+.+...+|+|..
T Consensus 405 g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 405 KKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CCEEEeec-CCCcccCceecCCC
Confidence 76543332 34455667787753
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=3e-11 Score=114.63 Aligned_cols=121 Identities=27% Similarity=0.509 Sum_probs=103.6
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEE-EeecccCCeEEEEECCCCCeeEEeeCCCeE
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDTNALRAASASADFSA 85 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 85 (349)
++|..+.||.+.|..+.|+. ||++++|.|.|.++|+|++++.+... +.=||++.|+.++|.++ +++|++.|.+.
T Consensus 166 n~p~~l~GHeG~iF~i~~s~---dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctc 240 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSL---DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTC 240 (967)
T ss_pred CCcceecccCCceEEEEEcc---CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEE
Confidence 34446789999999999986 99999999999999999999988766 56689999999999998 89999999999
Q ss_pred EEEECCCCCEEEEec-cC-CeEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 018860 86 KVWDALTGDVLHSFE-HK-HIVRACSFSEDTHLLLTGGMEKILRIFDLNR 133 (349)
Q Consensus 86 ~vWd~~~~~~~~~~~-~~-~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~ 133 (349)
|+|+.+..+ +..+. |. ..+..++..++...++|++.|+.+++|++..
T Consensus 241 rvW~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 241 RVWGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEecccce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999765433 33443 43 5689999999999999999999999999753
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=6.3e-08 Score=85.45 Aligned_cols=236 Identities=15% Similarity=0.128 Sum_probs=150.4
Q ss_pred EeecCCCccEEEEEec----------CCCeEEEeCCCCCeEEEeecccC-------CeEEEEECCCCCeeEEee-C-CCe
Q 018860 24 YSPITPDGFFLISASK----------DSSPMLRNGETGDWIGTFEGHKG-------AVWSCCLDTNALRAASAS-A-DFS 84 (349)
Q Consensus 24 fs~~~~~~~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~s~s-~-D~~ 84 (349)
+|| ||+.|..+.. +..+.+||.++.+.++.+.--.. .-...++++||++|.... . +..
T Consensus 53 ~sp---Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~ 129 (352)
T TIGR02658 53 VAS---DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPA 129 (352)
T ss_pred ECC---CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCE
Confidence 565 8888877765 67899999999999988874222 123678999999988776 3 789
Q ss_pred EEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC----ceeccCCCCeEE-EEEecCCCe
Q 018860 85 AKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPP----REVDRSPGSVRT-VAWLHSDQT 159 (349)
Q Consensus 85 i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~----~~~~~~~~~i~~-~~~~~~~~~ 159 (349)
|-+.|+.+++.+..+.-+........+.+..++. +.|+......+....... ..+..-...+.. -.|.+.++.
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEecCCccEEE--eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 9999999999998887554333333333333222 234444333332211100 000000000000 033453445
Q ss_pred EEEEeeCCCeEEEEECCCC-----ceEEeecC--------CCCeeEEEEcCCCcEEEE-ec----------CCeEEEEec
Q 018860 160 ILSTCTDMGGVRLWDVRSG-----EIVQTLET--------KSPVTSAEVSQDGRYITT-AD----------GSTVKFWDA 215 (349)
Q Consensus 160 ~l~~~~~dg~v~vwd~~~~-----~~~~~~~~--------~~~v~~~~~~~~~~~l~~-~~----------d~~i~iwd~ 215 (349)
.+..+.. |+|.+-|+... +....+.. .....-++++++++.+.. .. .+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 5444444 99999996433 22222211 122344899999877654 31 257999999
Q ss_pred CCceeeEEEcCCCceEEeeecCCCCC-EEEEe-cCCCeEEEEeCCCCcEEEEe
Q 018860 216 NHFGLVKSYNMPCTIESASLEPKYGN-KFVAG-GEDMWVRFFDFHTGNEIACN 266 (349)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~d~~i~v~d~~~~~~~~~~ 266 (349)
.+.+.+..+........++++|+ ++ .+++. ..++.|.++|..+++.+..+
T Consensus 287 ~t~kvi~~i~vG~~~~~iavS~D-gkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTGKRLRKIELGHEIDSINVSQD-AKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCeEEEEEeCCCceeeEEECCC-CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99999999888888889999986 55 55544 47889999999999988776
No 256
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=2.2e-10 Score=105.24 Aligned_cols=278 Identities=16% Similarity=0.234 Sum_probs=170.8
Q ss_pred ceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeeccc-CCeEEEEECCC---CCeeEEeeCCCeEEEEECCCC
Q 018860 18 PVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHK-GAVWSCCLDTN---ALRAASASADFSAKVWDALTG 93 (349)
Q Consensus 18 ~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~---~~~l~s~s~D~~i~vWd~~~~ 93 (349)
++.++..+| .|+-++.+++-|-..+--...+...+-+..-+ =.|-.+.|++. ...+++-+..++| +|++...
T Consensus 26 ~~~a~si~p---~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai-iwnlA~s 101 (1081)
T KOG0309|consen 26 GFNAVSINP---SGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKS 101 (1081)
T ss_pred cccceeecc---ccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh-hhhhhcC
Confidence 345555565 67778889888875554333333333332111 11344556543 3467777776666 8987532
Q ss_pred --CEEEEe--ccCCeEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCC
Q 018860 94 --DVLHSF--EHKHIVRACSFSEDT-HLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMG 168 (349)
Q Consensus 94 --~~~~~~--~~~~~v~~~~~s~~~-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 168 (349)
..+..+ .|...|+.+.|+|.. ..+++++.|-.+..||++.+..+.-....-...-..+.|...++.++++... +
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg-~ 180 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG-N 180 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC-C
Confidence 333333 477789999999864 5789999999999999998776654443333445678899888888876554 7
Q ss_pred eEEEEECCCC-ceEEeecCC-CCeeEEEEcC--CCcEEEEecCCeEEEEecCCcee--eEEEcCCCceEEeeecCCCCCE
Q 018860 169 GVRLWDVRSG-EIVQTLETK-SPVTSAEVSQ--DGRYITTADGSTVKFWDANHFGL--VKSYNMPCTIESASLEPKYGNK 242 (349)
Q Consensus 169 ~v~vwd~~~~-~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
-|++||++.| .++..++.+ ..++.+.|+. .+..+.++.|++|++||..+... .+.......+....+.|--..+
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 8999999876 456666653 3455555553 34567888899999999865322 2222222223333333321122
Q ss_pred EEEe-cCCCeEEEEeCC---------C-CcEEEEecCCCcceeEEEEcc--------CC--CeEEEecCCCCEEEecCC
Q 018860 243 FVAG-GEDMWVRFFDFH---------T-GNEIACNKGHHGPVHCVRFSP--------GG--ESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 243 ~~~~-~~d~~i~v~d~~---------~-~~~~~~~~~h~~~i~~l~~sp--------~~--~~l~sgs~Dg~v~vW~~~ 300 (349)
++.- -.+..+.+++.+ + .+.+..+.||++.|...-|-. +. -.|+|-|.|.++|+|.++
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 2211 112244444433 2 245778899998776654432 11 148999999999999875
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.23 E-value=2e-08 Score=91.46 Aligned_cols=256 Identities=17% Similarity=0.154 Sum_probs=155.1
Q ss_pred ccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEE-
Q 018860 31 GFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACS- 109 (349)
Q Consensus 31 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~- 109 (349)
+..++.++.++.+..+|.++|+.+....... .+.+...- .+..++.++.|+.+..||..+|+.+-.+........+.
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 4567788889999999998998776554322 22211111 23356677789999999999998876655332211110
Q ss_pred -EcC--CCCEEEEEeCCCeEEEEECCCCCCCCce-eccCCC--C------e-EEEEEecCCCeEEEEeeCCCeEEEEECC
Q 018860 110 -FSE--DTHLLLTGGMEKILRIFDLNRPDAPPRE-VDRSPG--S------V-RTVAWLHSDQTILSTCTDMGGVRLWDVR 176 (349)
Q Consensus 110 -~s~--~~~~l~s~~~d~~i~lwd~~~~~~~~~~-~~~~~~--~------i-~~~~~~~~~~~~l~~~~~dg~v~vwd~~ 176 (349)
-+| .+..++.+..++.+..+|+.+.+..... .....+ . + .+... .++.+++ ++.+|.+..||.+
T Consensus 183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~-~~~~g~l~a~d~~ 259 (377)
T TIGR03300 183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYA-VSYQGRVAALDLR 259 (377)
T ss_pred CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEE-EEcCCEEEEEECC
Confidence 011 1246777888888999998655432111 100000 0 0 01111 2344444 4456999999999
Q ss_pred CCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEc-CCCce-EEeeecCCCCCEEEEecCCCeEEE
Q 018860 177 SGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYN-MPCTI-ESASLEPKYGNKFVAGGEDMWVRF 254 (349)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~d~~i~v 254 (349)
+|+.+-....... ..... .++++++++.++.+..+|..+++.+.... ..... ..... .+..+++++.+|.+++
T Consensus 260 tG~~~W~~~~~~~-~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 260 SGRVLWKRDASSY-QGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHW 334 (377)
T ss_pred CCcEEEeeccCCc-cCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEE
Confidence 9987655442211 11112 24555566678999999998887665442 21111 11111 2568889999999999
Q ss_pred EeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEe
Q 018860 255 FDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297 (349)
Q Consensus 255 ~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW 297 (349)
+|..+++.+..++.+...+..--...+ +.|+.++.||.|..+
T Consensus 335 ~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 999999998877766544433322233 458889999998765
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.23 E-value=1e-09 Score=92.52 Aligned_cols=247 Identities=17% Similarity=0.244 Sum_probs=166.9
Q ss_pred CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEE-CCCCCEEEEecc--CCeEEEEEEcCCCCEEEEEeCCCeEEE
Q 018860 52 DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWD-ALTGDVLHSFEH--KHIVRACSFSEDTHLLLTGGMEKILRI 128 (349)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd-~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~l 128 (349)
.+++.++||.+.|+....-|-..-+++.+.|.++|||- .+.++.-..+.| +.+++++.++++...|+.|-..+++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 35677899999998888777777799999999999995 455666666655 467899999999999999999999988
Q ss_pred EECCCC---CCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEe
Q 018860 129 FDLNRP---DAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTA 205 (349)
Q Consensus 129 wd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 205 (349)
+.+... ....+....|...+..+.|.-+...+++++- |..+.---.+.+..+.......+..+..+.-. +...+
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~-dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvG 171 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK-DKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVG 171 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc-ccceEEEeeccCCcccceEeeccCCCCceeeE--EEEec
Confidence 876422 1234556778888999988877666665554 44443333344433322211111111111101 22222
Q ss_pred c-CCeEEEEec--CCceeeEEE-cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcE-EEEecCCCcceeEEEEcc
Q 018860 206 D-GSTVKFWDA--NHFGLVKSY-NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNE-IACNKGHHGPVHCVRFSP 280 (349)
Q Consensus 206 ~-d~~i~iwd~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~h~~~i~~l~~sp 280 (349)
+ .+.|..-.+ ....++..+ .+...+.+..|.+. ...+.+|..|..+.+||+.-.+. ...+.+|...|..+..-+
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 2 233333222 222333333 33455778888885 67899999999999999976554 356789999999998888
Q ss_pred CCCeEEEecCCCCEEEecCCCC
Q 018860 281 GGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 281 ~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
--+.|.|++.||.|-+|+....
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hheeeeeccCCCeEEEEeccce
Confidence 8888999999999999997543
No 259
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.22 E-value=3.5e-09 Score=87.59 Aligned_cols=261 Identities=13% Similarity=0.080 Sum_probs=164.7
Q ss_pred cCCCeEEEeCCCCCeEE--Eeec-ccCCeEEEEEC---CCCC-eeEEeeCCCeEEEEECCCCCEEEEeccC-----C--e
Q 018860 39 KDSSPMLRNGETGDWIG--TFEG-HKGAVWSCCLD---TNAL-RAASASADFSAKVWDALTGDVLHSFEHK-----H--I 104 (349)
Q Consensus 39 ~d~~i~iw~~~~~~~~~--~~~~-h~~~v~~~~~~---~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~-----~--~ 104 (349)
+.|.+.+|+....+.+. ++.. -+..+..+.|. .++. .++-+-.+|.|.++.....+....++.- . .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34566677765544322 2211 12234445542 2333 5677788999999987766555555411 1 1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-CCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC-CceE-
Q 018860 105 VRACSFSEDTHLLLTGGMEKILRIFDLNRPD-APPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS-GEIV- 181 (349)
Q Consensus 105 v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~- 181 (349)
.-++.|++.+..++++-.+|.+.+-+..... ......+.|.-+.....|...+..++.+|++|+.+.-||+|. ++.+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 3467788989999999888988744432211 122345677788888999888889999999999999999993 3332
Q ss_pred -EeecCCCCeeEEEEcCC-CcEEEEe-cCCeEEEEecCC-ceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeC
Q 018860 182 -QTLETKSPVTSAEVSQD-GRYITTA-DGSTVKFWDANH-FGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDF 257 (349)
Q Consensus 182 -~~~~~~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~ 257 (349)
+...+...|.++..+|. ..+++++ -|..|++||.|. ++++..-.....+-.+..+|.....++++..-+-.++.++
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 23345667888887764 4566554 599999999995 4555555555566777777755444444444444555555
Q ss_pred CCC--c---EEEEecCCCcceeEEEEccCCCeEEEec-CCCCEE-EecC
Q 018860 258 HTG--N---EIACNKGHHGPVHCVRFSPGGESYASGS-EDGTIR-IWQT 299 (349)
Q Consensus 258 ~~~--~---~~~~~~~h~~~i~~l~~sp~~~~l~sgs-~Dg~v~-vW~~ 299 (349)
... + .+...+.|.+-+..-.|.....+|||+| .|+.++ +|-.
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 432 2 2334566777666666644455788865 577755 7843
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.22 E-value=1.2e-09 Score=92.07 Aligned_cols=279 Identities=13% Similarity=0.217 Sum_probs=164.4
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEe----CCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEE-CC
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRN----GETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWD-AL 91 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd-~~ 91 (349)
.+++++.|.+ +...|+.|-..|++.-+. .+....++.+..|...|..+-|+....++++.+.|..+ .|- .+
T Consensus 69 ~~~~~~~y~~---e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e 144 (404)
T KOG1409|consen 69 SPCSAMEYVS---ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTE 144 (404)
T ss_pred CCceEeeeec---cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeec
Confidence 5677888876 677888888888876664 33445677788899999999999999999999999887 454 33
Q ss_pred CCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCC-CCceeccCCCCeEEEEEecCCCeEEEEeeCCCeE
Q 018860 92 TGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDA-PPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGV 170 (349)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v 170 (349)
.+..+..+.......++.+.- .+...|-..+.|.+-.+..... ....+.+|.+.+.++.|.+.+..++ +|..|..+
T Consensus 145 ~~~~lg~Y~~~~~~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~Lf-Sg~~d~~v 221 (404)
T KOG1409|consen 145 SGNRLGGYNFETPASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLF-SGASDHSV 221 (404)
T ss_pred cCCcccceEeeccCCCCceee--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEE-eccccCce
Confidence 333322221111111111110 1334444455555555432222 2345678899999999987665544 66667899
Q ss_pred EEEECCCCceE-Eee-cCCCCeeEEEEcCCC-cEEEEecCCeEEEEecCCceeeEE----------E-------------
Q 018860 171 RLWDVRSGEIV-QTL-ETKSPVTSAEVSQDG-RYITTADGSTVKFWDANHFGLVKS----------Y------------- 224 (349)
Q Consensus 171 ~vwd~~~~~~~-~~~-~~~~~v~~~~~~~~~-~~l~~~~d~~i~iwd~~~~~~~~~----------~------------- 224 (349)
.+||+.-++-. ..+ .+...+..+...+-. ++++++.|+.|.+|+.+..+.... .
T Consensus 222 i~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~ 301 (404)
T KOG1409|consen 222 IMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWD 301 (404)
T ss_pred EEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHh
Confidence 99999654432 223 234456666655544 445667799999999864332110 0
Q ss_pred -------cCCCceEEeee---cCCCCCEEEEecCCCeEEEEeCCC-------CcEEEEecCCCcceeEEEEccCCCeEEE
Q 018860 225 -------NMPCTIESASL---EPKYGNKFVAGGEDMWVRFFDFHT-------GNEIACNKGHHGPVHCVRFSPGGESYAS 287 (349)
Q Consensus 225 -------~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~v~d~~~-------~~~~~~~~~h~~~i~~l~~sp~~~~l~s 287 (349)
.+.++-+.-++ ..+....+..-+..-.+|+.|.-. ...+.....-...|+.+.+...-.+|+|
T Consensus 302 ~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvT 381 (404)
T KOG1409|consen 302 RKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVT 381 (404)
T ss_pred hhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceee
Confidence 00011000000 000111122223334556555321 1112222222245889999888889999
Q ss_pred ecCCCCEEEecCCCC
Q 018860 288 GSEDGTIRIWQTGPV 302 (349)
Q Consensus 288 gs~Dg~v~vW~~~~~ 302 (349)
++.|+.|+|||+.++
T Consensus 382 sG~~Rvi~iwd~~~v 396 (404)
T KOG1409|consen 382 SGTDRVIKIWDVRSV 396 (404)
T ss_pred cCCceEEEEEechhh
Confidence 999999999998654
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=1.8e-09 Score=91.09 Aligned_cols=238 Identities=13% Similarity=0.243 Sum_probs=153.7
Q ss_pred CCeEEEEECCCCCeeEEeeCCCeEEEEECCCCC-----EEEEec-------------cCCeEEEEEEcCCC--CEEEEEe
Q 018860 62 GAVWSCCLDTNALRAASASADFSAKVWDALTGD-----VLHSFE-------------HKHIVRACSFSEDT--HLLLTGG 121 (349)
Q Consensus 62 ~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-----~~~~~~-------------~~~~v~~~~~s~~~--~~l~s~~ 121 (349)
+-|.++.|+..|.+|+||..+|.|-++.-.... ....++ -...|..+.|.+++ ..++..+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 457899999999999999999999999643221 111121 23457889998865 4567778
Q ss_pred CCCeEEEEECCCCCCCC----------------------------------c-eeccCCCCeEEEEEecCCCeEEEEeeC
Q 018860 122 MEKILRIFDLNRPDAPP----------------------------------R-EVDRSPGSVRTVAWLHSDQTILSTCTD 166 (349)
Q Consensus 122 ~d~~i~lwd~~~~~~~~----------------------------------~-~~~~~~~~i~~~~~~~~~~~~l~~~~~ 166 (349)
.|++|++|.+....... + ....|+-.|.++.+..+...++ ++ |
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA-D 183 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA-D 183 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec-c
Confidence 99999999875322111 0 0123445577887765555444 33 5
Q ss_pred CCeEEEEECCC-CceEEeecC--------CCCeeEEEEcCCC--cEEEEecCCeEEEEecCCceee----EEEcCC----
Q 018860 167 MGGVRLWDVRS-GEIVQTLET--------KSPVTSAEVSQDG--RYITTADGSTVKFWDANHFGLV----KSYNMP---- 227 (349)
Q Consensus 167 dg~v~vwd~~~-~~~~~~~~~--------~~~v~~~~~~~~~--~~l~~~~d~~i~iwd~~~~~~~----~~~~~~---- 227 (349)
|=.|.+|.+.- .+....+.. ...+++..|+|.. .++.++..|+|++-|+|...+- +.+..+
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 57899999863 333333221 1347788899864 3455677899999999854321 111111
Q ss_pred ---------CceEEeeecCCCCCEEEEecCCCeEEEEeC-CCCcEEEEecCCC------------cce---eEEEEccCC
Q 018860 228 ---------CTIESASLEPKYGNKFVAGGEDMWVRFFDF-HTGNEIACNKGHH------------GPV---HCVRFSPGG 282 (349)
Q Consensus 228 ---------~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~-~~~~~~~~~~~h~------------~~i---~~l~~sp~~ 282 (349)
..+..+.|++. |+++++-. =-+|.+||+ ...+.+.++.-|. ..| ..++|+-++
T Consensus 264 ~rsffseiIsSISDvKFs~s-GryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHS-GRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred chhhHHHHhhhhhceEEccC-CcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 12455666653 67766543 358999999 4455555554442 222 457899889
Q ss_pred CeEEEecCCCCEEEecCCCCC
Q 018860 283 ESYASGSEDGTIRIWQTGPVT 303 (349)
Q Consensus 283 ~~l~sgs~Dg~v~vW~~~~~~ 303 (349)
.+++|||.....++++...+.
T Consensus 342 ~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ceEecccccceEEEecCCCCc
Confidence 999999999999999965543
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.8e-08 Score=92.80 Aligned_cols=216 Identities=14% Similarity=0.028 Sum_probs=125.3
Q ss_pred ceeeEEEeecCCCccEE---EEEecCCCeEEE--eCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeC-----CCeEEE
Q 018860 18 PVVDLFYSPITPDGFFL---ISASKDSSPMLR--NGETGDWIGTFEGHKGAVWSCCLDTNALRAASASA-----DFSAKV 87 (349)
Q Consensus 18 ~v~~~~fs~~~~~~~~l---~s~s~d~~i~iw--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----D~~i~v 87 (349)
.+..=.||| ||+.+ .....++.-.|| +..+++..+ +....+.....+|+|||+.|+-.+. |-.+.+
T Consensus 186 ~~~sP~wSP---DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 186 LSITPTWMH---IGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CcccceEcc---CCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 334446776 87642 244445554444 666654322 2222333456799999988876542 334555
Q ss_pred EECCCC---CEEEEeccC-CeEEEEEEcCCCCEEEEEe-CCCeEEEEECCC--CCCCCceeccCCCCeEEEEEecCCCeE
Q 018860 88 WDALTG---DVLHSFEHK-HIVRACSFSEDTHLLLTGG-MEKILRIFDLNR--PDAPPREVDRSPGSVRTVAWLHSDQTI 160 (349)
Q Consensus 88 Wd~~~~---~~~~~~~~~-~~v~~~~~s~~~~~l~s~~-~d~~i~lwd~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (349)
|++..+ +........ ......+|+|||+.|+..+ .++..++|.+.. .....+.+......+....|+|++..+
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence 777653 333333222 3446789999999877655 466666665432 122122233333456678899988877
Q ss_pred EEEeeCC--CeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEE-ec---CCeEEEEecCCceeeEEEcCCCceEEee
Q 018860 161 LSTCTDM--GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITT-AD---GSTVKFWDANHFGLVKSYNMPCTIESAS 234 (349)
Q Consensus 161 l~~~~~d--g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 234 (349)
+.++..+ ..|.+||+.+++..........+....|+|||+.|+. +. ...|.++|+..................+
T Consensus 342 af~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~ 421 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPS 421 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCce
Confidence 7665543 3699999998876543333334567889999987643 32 3468888887765544433322233344
Q ss_pred ecC
Q 018860 235 LEP 237 (349)
Q Consensus 235 ~~~ 237 (349)
|.|
T Consensus 422 Ws~ 424 (428)
T PRK01029 422 WGA 424 (428)
T ss_pred ecC
Confidence 444
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=4.4e-09 Score=94.63 Aligned_cols=185 Identities=13% Similarity=0.158 Sum_probs=138.7
Q ss_pred CCccEEEEEecCCCeEEEeCCCCCeEEEeec--c-cCCeEEEEE--------------------CCCCCeeEEeeCCCeE
Q 018860 29 PDGFFLISASKDSSPMLRNGETGDWIGTFEG--H-KGAVWSCCL--------------------DTNALRAASASADFSA 85 (349)
Q Consensus 29 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--h-~~~v~~~~~--------------------~~~~~~l~s~s~D~~i 85 (349)
+...|+|..+.||.++||+...++....|.. | ++...+..| +.+-..|+=|-..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3577999999999999999888776655532 1 122233333 1233356667789999
Q ss_pred EEEECCCCCEEEEec---cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEE
Q 018860 86 KVWDALTGDVLHSFE---HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILS 162 (349)
Q Consensus 86 ~vWd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 162 (349)
.++++..|+....+. |.+.|.++.++.+-..|.|++.|..+..|+.... ...+.....+..+.++..+|+ +.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~D-~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISPD-GKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcCC-CCEEE
Confidence 999999999888775 8899999999999999999999999999998543 334555666677888888876 44555
Q ss_pred EeeCCCeEEEEECCCCceEEeecCC-CCeeEEEEcCC-----CcEEEEec--CCeEEEEecCC
Q 018860 163 TCTDMGGVRLWDVRSGEIVQTLETK-SPVTSAEVSQD-----GRYITTAD--GSTVKFWDANH 217 (349)
Q Consensus 163 ~~~~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~~~~-----~~~l~~~~--d~~i~iwd~~~ 217 (349)
+++ ++|++||+.+++.+.++.++ ++++++.|-.+ |.++.++. ...+.+|-...
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 554 69999999999999999875 58999988766 55654443 56677786544
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.21 E-value=4.1e-08 Score=99.49 Aligned_cols=233 Identities=12% Similarity=0.088 Sum_probs=152.4
Q ss_pred EEEECCC-CCeeEEeeCCCeEEEEECCCCCEEEEeccC---------------CeEEEEEEcCCCCEEEEE-eCCCeEEE
Q 018860 66 SCCLDTN-ALRAASASADFSAKVWDALTGDVLHSFEHK---------------HIVRACSFSEDTHLLLTG-GMEKILRI 128 (349)
Q Consensus 66 ~~~~~~~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~---------------~~v~~~~~s~~~~~l~s~-~~d~~i~l 128 (349)
.++++++ +..+++-...+.|++||.. +..+..+... .....+++.++++.|+.+ ...+.|+.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5678764 6677777788899999976 4444433210 124788999988766554 45577899
Q ss_pred EECCCCCCCCceec----------cC-------CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec------
Q 018860 129 FDLNRPDAPPREVD----------RS-------PGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE------ 185 (349)
Q Consensus 129 wd~~~~~~~~~~~~----------~~-------~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~------ 185 (349)
+|+.+... ..+. +. -.....+++.+.++.++++...++.|++||..++.......
T Consensus 651 id~~~~~V--~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVNETV--RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EecCCCEE--EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 98754321 1110 00 11235688888677777777777999999998775431110
Q ss_pred --C-------CCCeeEEEEcCCCcEEE-E-ecCCeEEEEecCCceeeEEE-----------cC-----------CCceEE
Q 018860 186 --T-------KSPVTSAEVSQDGRYIT-T-ADGSTVKFWDANHFGLVKSY-----------NM-----------PCTIES 232 (349)
Q Consensus 186 --~-------~~~v~~~~~~~~~~~l~-~-~~d~~i~iwd~~~~~~~~~~-----------~~-----------~~~~~~ 232 (349)
. ......++++|++..|. + ..++.|++||+.++...... .. -..+..
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 0 01235688999987443 3 44789999998765422111 00 012346
Q ss_pred eeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEec-------------CCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 233 ASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNK-------------GHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-------------~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
+++.+ +++.+++...++.|++||..++....... ++-.....++++++|+.+++-+.++.|++||+
T Consensus 809 vavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 66776 36788888999999999998776543221 12235678999999998899999999999998
Q ss_pred CCC
Q 018860 300 GPV 302 (349)
Q Consensus 300 ~~~ 302 (349)
...
T Consensus 888 ~~~ 890 (1057)
T PLN02919 888 NKG 890 (1057)
T ss_pred CCC
Confidence 654
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.19 E-value=4.3e-10 Score=96.61 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=113.1
Q ss_pred CCccEEEEEecCCCeEEEeCCCC----CeEEEeecccC--CeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccC
Q 018860 29 PDGFFLISASKDSSPMLRNGETG----DWIGTFEGHKG--AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHK 102 (349)
Q Consensus 29 ~~~~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~ 102 (349)
+++++||.+..+....+.+.... +++..+..... .+..+..+........++....+.+|++.++.+...+.|-
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhv 151 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHV 151 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhh
Confidence 47889988888777666665433 23333333322 2333333334444445677888899988878888888899
Q ss_pred CeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEE
Q 018860 103 HIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQ 182 (349)
Q Consensus 103 ~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 182 (349)
..+..++++||.++|+++..|..||+-.+...........+|..-|..++..+ + +.|++++.|++|++||+++|++++
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~-~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-N-YLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-C-ceeeecCCCCcEEEEecccCCccc
Confidence 99999999999999999999999999887655444445567888898888653 3 345556666999999999999987
Q ss_pred eecCC
Q 018860 183 TLETK 187 (349)
Q Consensus 183 ~~~~~ 187 (349)
++...
T Consensus 230 t~dl~ 234 (390)
T KOG3914|consen 230 TCDLS 234 (390)
T ss_pred ccchh
Confidence 76543
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=2.1e-10 Score=102.29 Aligned_cols=237 Identities=18% Similarity=0.288 Sum_probs=156.1
Q ss_pred EEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC-C------EEEEe-ccCCeEEEEEEcCCCCEEEEEeCCCeE
Q 018860 55 GTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG-D------VLHSF-EHKHIVRACSFSEDTHLLLTGGMEKIL 126 (349)
Q Consensus 55 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-~------~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i 126 (349)
..|.||+..|+.++--.+...+++++.|++||+|.++.. . |..++ .|+.+|..+.|-.+.+.+++ -|+.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 456799999988876666778999999999999997642 2 33343 38899999999988888776 47889
Q ss_pred EEEECCCCCCCCcee-ccCCCCeEEEEEecC--CCeEEEEeeCCCeEEEEECCCCceEEeecC------CCCeeEEEEcC
Q 018860 127 RIFDLNRPDAPPREV-DRSPGSVRTVAWLHS--DQTILSTCTDMGGVRLWDVRSGEIVQTLET------KSPVTSAEVSQ 197 (349)
Q Consensus 127 ~lwd~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~------~~~v~~~~~~~ 197 (349)
.+||.-......... ....+....+...++ ...+++.|+...+|+++|.|.+.....+.. +.-+.++++.+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 999964332211111 011122222222332 345566778889999999999988776642 13478899999
Q ss_pred CCcEEEEe-cCCeEEEEecCCceeeEEEc-CCCceEEeeecCCCCCEEEEecCCCeEEE-EeCCCCcEEEEecCCCccee
Q 018860 198 DGRYITTA-DGSTVKFWDANHFGLVKSYN-MPCTIESASLEPKYGNKFVAGGEDMWVRF-FDFHTGNEIACNKGHHGPVH 274 (349)
Q Consensus 198 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~v-~d~~~~~~~~~~~~h~~~i~ 274 (349)
.|++++++ .+|.|.+.|.+++..++.+. +.|....++ .| .++.++....|.++.+ |....+......+.-..+
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-ap-sdq~L~~saldHslaVnWhaldgimh~q~kpppep-- 962 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-AP-SDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP-- 962 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-Cc-hhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc--
Confidence 99998876 58999999999999887653 344333332 12 2566777778888888 866554433322211111
Q ss_pred EEEE-ccCCCeEEEecCCCCEEEec
Q 018860 275 CVRF-SPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 275 ~l~~-sp~~~~l~sgs~Dg~v~vW~ 298 (349)
..| ..-|..|++......+.+|.
T Consensus 963 -ahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 963 -AHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred -hhhhhccCceeEEeccCcEEEEEe
Confidence 111 11355677777667778874
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.16 E-value=9.6e-09 Score=85.04 Aligned_cols=198 Identities=16% Similarity=0.151 Sum_probs=135.9
Q ss_pred eeeEEEeecCCCcc-EEEEEecCCCeEEEeCCCCCeEEEeecc---cCC---eEEEEECCCCCeeEEeeCCCeEEEEECC
Q 018860 19 VVDLFYSPITPDGF-FLISASKDSSPMLRNGETGDWIGTFEGH---KGA---VWSCCLDTNALRAASASADFSAKVWDAL 91 (349)
Q Consensus 19 v~~~~fs~~~~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~h---~~~---v~~~~~~~~~~~l~s~s~D~~i~vWd~~ 91 (349)
+.++.|.-.-.+|. .|+-+-++|.|.++...-.+....|++- +-. ..++.|++.+..++++-.+|.+-+-+..
T Consensus 72 ~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t 151 (339)
T KOG0280|consen 72 EFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYET 151 (339)
T ss_pred cceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecc
Confidence 45555554334555 5667778888888875544444444432 211 2456678888899999999999866544
Q ss_pred CCCEEE--Eec-cCCeEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCC-CceeccCCCCeEEEEEecCCCeEEEEeeC
Q 018860 92 TGDVLH--SFE-HKHIVRACSFSE-DTHLLLTGGMEKILRIFDLNRPDAP-PREVDRSPGSVRTVAWLHSDQTILSTCTD 166 (349)
Q Consensus 92 ~~~~~~--~~~-~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 166 (349)
...... +.+ |.-....+.|+. +-+++.+||.|+.+..||++.++.. ......|...|.++.-+|+.+..+++|+-
T Consensus 152 ~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY 231 (339)
T KOG0280|consen 152 EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY 231 (339)
T ss_pred eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc
Confidence 443332 332 666777788875 3478999999999999999855432 23356678889999989999999999999
Q ss_pred CCeEEEEECC-CCceEEeecCCCCeeEEEEcCCC--cEEEEecCCeEEEEecC
Q 018860 167 MGGVRLWDVR-SGEIVQTLETKSPVTSAEVSQDG--RYITTADGSTVKFWDAN 216 (349)
Q Consensus 167 dg~v~vwd~~-~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~d~~i~iwd~~ 216 (349)
|..|++||+| .++++..-...+.|..+..+|.- ++|+++.-+..++-+.+
T Consensus 232 De~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~ 284 (339)
T KOG0280|consen 232 DECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS 284 (339)
T ss_pred ccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence 9999999999 47777666666789999988854 33444432334444443
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.14 E-value=1.9e-07 Score=94.75 Aligned_cols=237 Identities=11% Similarity=0.141 Sum_probs=152.4
Q ss_pred eEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeec-cc-------------CCeEEEEECCCCCeeEEee-CCCeE
Q 018860 21 DLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEG-HK-------------GAVWSCCLDTNALRAASAS-ADFSA 85 (349)
Q Consensus 21 ~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~-------------~~v~~~~~~~~~~~l~s~s-~D~~i 85 (349)
.+++++ .++.+.++-+..+.|++++.. +..+..+.+ .. ..-..+++++++..|..+. ..+.|
T Consensus 572 gvavd~--~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 572 KLAIDL--LNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred eEEEEC--CCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 466664 246677777788889999875 555544432 11 1136788998877555544 45789
Q ss_pred EEEECCCCCEEEEecc------------------CCeEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCC-------Cc
Q 018860 86 KVWDALTGDVLHSFEH------------------KHIVRACSFSE-DTHLLLTGGMEKILRIFDLNRPDAP-------PR 139 (349)
Q Consensus 86 ~vWd~~~~~~~~~~~~------------------~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~~~-------~~ 139 (349)
+++|..++... ++.. -+.-..++++| ++.++++.+.++.|++||....... ..
T Consensus 649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99998776432 2210 01235789999 5667777778899999997543210 00
Q ss_pred eecc------CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec--------------C--------CCCee
Q 018860 140 EVDR------SPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE--------------T--------KSPVT 191 (349)
Q Consensus 140 ~~~~------~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--------------~--------~~~v~ 191 (349)
...+ .......++++++++.++++...++.|++||+.++....... . .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0000 112345688888877777777777999999998765321100 0 00124
Q ss_pred EEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEEcCC--------------CceEEeeecCCCCCEEEEecCCCeEEEEe
Q 018860 192 SAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSYNMP--------------CTIESASLEPKYGNKFVAGGEDMWVRFFD 256 (349)
Q Consensus 192 ~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~d~~i~v~d 256 (349)
.++++++|.++++ ..++.|++||..+.......... ..+..+++.+ +++.+++.+.++.|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 6788899876655 45889999999876554332211 1345677776 478888889999999999
Q ss_pred CCCCcE
Q 018860 257 FHTGNE 262 (349)
Q Consensus 257 ~~~~~~ 262 (349)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988764
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=1.1e-08 Score=92.05 Aligned_cols=209 Identities=17% Similarity=0.243 Sum_probs=142.6
Q ss_pred CCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeE
Q 018860 70 DTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVR 149 (349)
Q Consensus 70 ~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~ 149 (349)
++...++|....||.+|+|+...++....|.... ..+.-++.-.|.+.....+.+.... ....
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~---------------~~s~t~~~~~w~L~~~~s~~k~~~~--~~~~ 64 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA---------------SLSGTCTYTKWGLSADYSPMKWLSL--EKAK 64 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccch---------------hccCcceeEEEEEEeccchHHHHhH--HHHh
Confidence 3456789999999999999998887665553211 1111122233433211111110000 0000
Q ss_pred EEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec---CCCCeeEEEEcCCCcEE-EEecCCeEEEEecCCceeeEEEc
Q 018860 150 TVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE---TKSPVTSAEVSQDGRYI-TTADGSTVKFWDANHFGLVKSYN 225 (349)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l-~~~~d~~i~iwd~~~~~~~~~~~ 225 (349)
. ...+...++-|...|.|.+++...|+.-..+. +..+|+++..+.+-..+ +++.|..+..|+......++.+.
T Consensus 65 ~---~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~ 141 (541)
T KOG4547|consen 65 K---ASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK 141 (541)
T ss_pred h---ccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec
Confidence 0 11344556667777999999999999887775 34578888777665444 56678999999999888887776
Q ss_pred CC-CceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccC-----CCeEE-EecCCCCEEEec
Q 018860 226 MP-CTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPG-----GESYA-SGSEDGTIRIWQ 298 (349)
Q Consensus 226 ~~-~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~-----~~~l~-sgs~Dg~v~vW~ 298 (349)
.. ..+.+++..|+ +..+++|+ +.|.+||+++.+.+..+.||.++|.++.|..+ |.++. +...+.-+.+|-
T Consensus 142 ~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 142 EQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred cCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 53 45677888885 78888775 57999999999999999999999999999877 56655 455666788887
Q ss_pred CCC
Q 018860 299 TGP 301 (349)
Q Consensus 299 ~~~ 301 (349)
+..
T Consensus 219 v~~ 221 (541)
T KOG4547|consen 219 VEK 221 (541)
T ss_pred EEc
Confidence 643
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.11 E-value=1.6e-07 Score=83.44 Aligned_cols=271 Identities=17% Similarity=0.223 Sum_probs=171.5
Q ss_pred eeeEEEeecCCCccEEEEEecCCC---------------eEEEeCCCCCeEEEeecccCC--eE-EEEECCCCCeeEEee
Q 018860 19 VVDLFYSPITPDGFFLISASKDSS---------------PMLRNGETGDWIGTFEGHKGA--VW-SCCLDTNALRAASAS 80 (349)
Q Consensus 19 v~~~~fs~~~~~~~~l~s~s~d~~---------------i~iw~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~l~s~s 80 (349)
|..+.||| .++||.+=+.-.. +.+||+.++..+.++.+...+ .| -+.|+.+.+++|=-
T Consensus 74 V~~~~fSP---~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 74 VKYLDFSP---NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred ceecccCc---ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence 45556665 8999988765443 789999999999999987766 56 67899888876644
Q ss_pred CCCeEEEEECCCCCE-EEEec--cCCeEEEEEEcCCCC--EEEE-----EeCCCeEEEEECCCCCCCC-ceeccCCCCeE
Q 018860 81 ADFSAKVWDALTGDV-LHSFE--HKHIVRACSFSEDTH--LLLT-----GGMEKILRIFDLNRPDAPP-REVDRSPGSVR 149 (349)
Q Consensus 81 ~D~~i~vWd~~~~~~-~~~~~--~~~~v~~~~~s~~~~--~l~s-----~~~d~~i~lwd~~~~~~~~-~~~~~~~~~i~ 149 (349)
....+.|.++ ++.. .+-+. ....++..+|+|.++ .|+. .+....+++|.+....... +.+- ...-.
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf--k~~~~ 226 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF--KVSGV 226 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE--eeccc
Confidence 3346889987 3321 11111 134577788888643 3332 4677889999986332111 1111 11123
Q ss_pred EEEEecCCCeEEEEee----------CCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCc-EEEEe--cCCeEEEEecC
Q 018860 150 TVAWLHSDQTILSTCT----------DMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGR-YITTA--DGSTVKFWDAN 216 (349)
Q Consensus 150 ~~~~~~~~~~~l~~~~----------~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~--~d~~i~iwd~~ 216 (349)
.+.|.+.+..+++-.. ....+.+++++...+.-......+|....|.|.++ +.+++ ....+.++|++
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 4667766665543221 11467888887544433335578999999999875 43443 36889999998
Q ss_pred CceeeEEEcCCCceEEeeecCCCCCEEEEecCC---CeEEEEeCCCCcEEE-EecCCCcceeEEEEccCCCeEEEe--c-
Q 018860 217 HFGLVKSYNMPCTIESASLEPKYGNKFVAGGED---MWVRFFDFHTGNEIA-CNKGHHGPVHCVRFSPGGESYASG--S- 289 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~i~v~d~~~~~~~~-~~~~h~~~i~~l~~sp~~~~l~sg--s- 289 (349)
.. ++.+.-+..-..+.|+|. .++++.++-| |.+.+||........ .+.+-. ..-+.|+|+++++.+. |
T Consensus 307 ~N--l~~~~Pe~~rNT~~fsp~-~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 307 GN--LRFYFPEQKRNTIFFSPH-ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred cc--eEEecCCcccccccccCc-ccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCc
Confidence 76 332222233345667775 6777776654 689999987654433 443322 2345799999987654 2
Q ss_pred ---CCCCEEEecCCC
Q 018860 290 ---EDGTIRIWQTGP 301 (349)
Q Consensus 290 ---~Dg~v~vW~~~~ 301 (349)
.|..++||++..
T Consensus 382 k~~~Dn~i~l~~v~g 396 (561)
T COG5354 382 KLRVDNSIKLWDVYG 396 (561)
T ss_pred ccccCcceEEEEecC
Confidence 488999999864
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=8.7e-09 Score=86.00 Aligned_cols=209 Identities=18% Similarity=0.320 Sum_probs=139.4
Q ss_pred CCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC-----CCeEEEeecccCC------------eEEEEECCCCC--e
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET-----GDWIGTFEGHKGA------------VWSCCLDTNAL--R 75 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~-----~~~~~~~~~h~~~------------v~~~~~~~~~~--~ 75 (349)
..+-|++|.|.. .|.||++|...|.+.++.... .++...|++|... |..+.|-.++. .
T Consensus 25 ead~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 25 EADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ccceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 356688998975 789999999889888885432 2334456666533 45556544332 3
Q ss_pred eEEeeCCCeEEEEECCCCCE-------------------------------------EE-----Ee--ccCCeEEEEEEc
Q 018860 76 AASASADFSAKVWDALTGDV-------------------------------------LH-----SF--EHKHIVRACSFS 111 (349)
Q Consensus 76 l~s~s~D~~i~vWd~~~~~~-------------------------------------~~-----~~--~~~~~v~~~~~s 111 (349)
++-...|++|++|.+..... +. .. .|+.-+.++.|.
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 55567799999998744200 00 00 155568899999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCcee--ccC-----CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceE-E-
Q 018860 112 EDTHLLLTGGMEKILRIFDLNRPDAPPREV--DRS-----PGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIV-Q- 182 (349)
Q Consensus 112 ~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~--~~~-----~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-~- 182 (349)
.|...++++ .|-.|.+|++...+.....+ .+| ..-|++..|+|....++.-++..|.|++-|+|+.... .
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 998888874 57789999987665433222 222 2246778888877777766677799999999954221 0
Q ss_pred --ee----c---------CCCCeeEEEEcCCCcEEEEecCCeEEEEecCCc-eeeEEEcCC
Q 018860 183 --TL----E---------TKSPVTSAEVSQDGRYITTADGSTVKFWDANHF-GLVKSYNMP 227 (349)
Q Consensus 183 --~~----~---------~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~ 227 (349)
.+ . .-+.+..+.|+++|+++.+-+=-++++||.+.. .++++.++.
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechH
Confidence 01 1 123577889999999998877789999999754 466666443
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=2.4e-06 Score=73.21 Aligned_cols=262 Identities=15% Similarity=0.191 Sum_probs=162.5
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecC---CCeEEEe--CCCCCe--EEEeecccCCeEEEEECCCCCeeEEeeC-CCeE
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKD---SSPMLRN--GETGDW--IGTFEGHKGAVWSCCLDTNALRAASASA-DFSA 85 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d---~~i~iw~--~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~-D~~i 85 (349)
.+.+.++=++|+| ++++|.++-.+ |.|.-|. ..+|.+ +.....-..+-.-+++++++++++++.. -+.|
T Consensus 37 ~~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 37 AELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred cccCCCceEEECC---CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceE
Confidence 4455566677776 78889888776 4455554 444544 2211111122267899999999999885 6889
Q ss_pred EEEECCC-CCE---EEEeccCCe----------EEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCCCCce--eccCCCCe
Q 018860 86 KVWDALT-GDV---LHSFEHKHI----------VRACSFSEDTHLLLTGG-MEKILRIFDLNRPDAPPRE--VDRSPGSV 148 (349)
Q Consensus 86 ~vWd~~~-~~~---~~~~~~~~~----------v~~~~~s~~~~~l~s~~-~d~~i~lwd~~~~~~~~~~--~~~~~~~i 148 (349)
.++.++. |.. +..+.|... +....|.|++++|++.. .-..|.+|++......... ........
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 9999865 432 334445444 78889999999998875 2335899999744332211 11223356
Q ss_pred EEEEEecCCCeEEEEeeCCCeEEEEECCC--Cc--eEEee-------cCCCCeeEEEEcCCCcEEEEec--CCeEEEEec
Q 018860 149 RTVAWLHSDQTILSTCTDMGGVRLWDVRS--GE--IVQTL-------ETKSPVTSAEVSQDGRYITTAD--GSTVKFWDA 215 (349)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~dg~v~vwd~~~--~~--~~~~~-------~~~~~v~~~~~~~~~~~l~~~~--d~~i~iwd~ 215 (349)
+-+.|+|+.+..-+.+--+++|.+|.... ++ .++.+ .......++.+++||++|.+++ ...|.+|.+
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 77899888777666777779999999876 32 22222 2234577889999999998886 357888776
Q ss_pred CCc--e--eeEEEcCCCc-eEEeeecCCCCCEEEEecC-CCeEEEEeCC--CCcEEEEec-CCCcceeEEEEc
Q 018860 216 NHF--G--LVKSYNMPCT-IESASLEPKYGNKFVAGGE-DMWVRFFDFH--TGNEIACNK-GHHGPVHCVRFS 279 (349)
Q Consensus 216 ~~~--~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-d~~i~v~d~~--~~~~~~~~~-~h~~~i~~l~~s 279 (349)
... . .+.......+ +..+.+.+. +++|+++.. ...|.+|... +|+.-.... .......|+.|.
T Consensus 274 ~~~~g~L~~~~~~~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 274 DPDGGKLELVGITPTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCCEEEEEEEeccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 543 2 1222222222 456677775 677776664 4468887653 444432222 223344566653
No 273
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.7e-09 Score=92.24 Aligned_cols=245 Identities=17% Similarity=0.189 Sum_probs=164.6
Q ss_pred CCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCC---CCeEEEeecccCCeEEEEECCCCCeeEEeeC-CCeEEEEEC
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDTNALRAASASA-DFSAKVWDA 90 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-D~~i~vWd~ 90 (349)
|.+.|+.+.-. -.++++++|.||..+.|.... -+.+..+..|-..|.+++.+.++..+.|.+. |..+|++|+
T Consensus 8 hrd~i~hv~~t----ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT----KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee----hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 88888888665 467999999999999997543 3678888999999999999999999999888 999999999
Q ss_pred CCCCEEEEeccCCeEEEEEE-cCCC---CEEEE-EeCCCeEEEEECCCCCCCCc-eeccCCCCeEEEEEecCCCeEEEEe
Q 018860 91 LTGDVLHSFEHKHIVRACSF-SEDT---HLLLT-GGMEKILRIFDLNRPDAPPR-EVDRSPGSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~-s~~~---~~l~s-~~~d~~i~lwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~ 164 (349)
.+......+.-...-..+.| ...| ..|+. .-.++.+.++|-.....+.. .-.-|..+|..+.+.+.....+ +.
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-Si 162 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SI 162 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee-ec
Confidence 88776655443222222233 2223 13333 33678899999654432222 2345677888888887666554 44
Q ss_pred eCCCeEEEEECCC------CceEEee----------cCCCCeeEEEEcCCCcEEEE-ecCCeEEEEecCCceeeEEEcCC
Q 018860 165 TDMGGVRLWDVRS------GEIVQTL----------ETKSPVTSAEVSQDGRYITT-ADGSTVKFWDANHFGLVKSYNMP 227 (349)
Q Consensus 165 ~~dg~v~vwd~~~------~~~~~~~----------~~~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~ 227 (349)
...|.|..|.... .+..-.+ +.+....++.++|++..++. +.|..|++++.+++++++.+...
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 4458999998763 1111111 12345678999999988765 67999999999887766543110
Q ss_pred ---------------------------------C-ceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEe
Q 018860 228 ---------------------------------C-TIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACN 266 (349)
Q Consensus 228 ---------------------------------~-~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~ 266 (349)
. ....+.|..+ +++++.++-= -|+++++.+++.+..+
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes-~~flly~t~~-gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES-GNFLLYGTIL-GIKVINLDTNTVVRIL 313 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC-CCEEEeecce-eEEEEEeecCeEEEEe
Confidence 0 1123344443 6667666544 3788888887766554
No 274
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.06 E-value=2.2e-07 Score=82.62 Aligned_cols=273 Identities=17% Similarity=0.165 Sum_probs=172.4
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCe------------
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFS------------ 84 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~------------ 84 (349)
-++..+.||| .|++|++... .-|.+|.......+..++ | ..|.-+.|+|.++||.|=+....
T Consensus 33 ~p~~~~~~SP---~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 33 WPVAYVSESP---LGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cchhheeecC---cchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 4677788887 8999998766 446889877766555554 3 35888999999999998766554
Q ss_pred ---EEEEECCCCCEEEEeccCC---eEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccC-CCCeEEEEEecC
Q 018860 85 ---AKVWDALTGDVLHSFEHKH---IVR-ACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRS-PGSVRTVAWLHS 156 (349)
Q Consensus 85 ---i~vWd~~~~~~~~~~~~~~---~v~-~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~-~~~i~~~~~~~~ 156 (349)
+.+||+.+|..+..+.... ... -+.|+-+.+++|=- ....+.++++ +.......+... ...+....|+|.
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 8999999999998886332 133 57788777665433 2345888886 332222222111 345777777775
Q ss_pred CC-eEEEE-----eeCCCeEEEEECCCCceEEeecC-CCCeeEEEEcCCCcEEEEe------c------CCeEEEEecCC
Q 018860 157 DQ-TILST-----CTDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTA------D------GSTVKFWDANH 217 (349)
Q Consensus 157 ~~-~~l~~-----~~~dg~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~------~------d~~i~iwd~~~ 217 (349)
+. .-|+. .+..+++++|.+..++.+.+... +..-..+.|++.|.++.+- . ...+.|+++..
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 22 22222 34457899999987665543321 1122457788888765331 1 13577777764
Q ss_pred ceeeEEEcCCCceEEeeecCCCCCEEE-EecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCC---CC
Q 018860 218 FGLVKSYNMPCTIESASLEPKYGNKFV-AGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSED---GT 293 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~D---g~ 293 (349)
..+.-.......+...+|.|...+..+ +|-.+..+.++|++.. ....+ -...=..+.|||.+++++.++.| |.
T Consensus 265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gn 341 (561)
T COG5354 265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGN 341 (561)
T ss_pred cccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccc
Confidence 443333344556778899887544433 3467889999998764 32222 12233456788888887776654 45
Q ss_pred EEEecCC
Q 018860 294 IRIWQTG 300 (349)
Q Consensus 294 v~vW~~~ 300 (349)
+-+|+..
T Consensus 342 i~i~~~~ 348 (561)
T COG5354 342 IEIFDPA 348 (561)
T ss_pred eEEeccC
Confidence 7778763
No 275
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.00 E-value=1.3e-09 Score=64.25 Aligned_cols=38 Identities=32% Similarity=0.489 Sum_probs=36.6
Q ss_pred CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEE
Q 018860 52 DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWD 89 (349)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd 89 (349)
++++++++|..+|++++|+|++.+|+|++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57899999999999999999999999999999999997
No 276
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.00 E-value=1.4e-06 Score=86.94 Aligned_cols=274 Identities=14% Similarity=0.241 Sum_probs=174.4
Q ss_pred CCceeeEEEeecCCCccEEEEEecCCCeEEE----eCCCC--CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEE
Q 018860 16 SRPVVDLFYSPITPDGFFLISASKDSSPMLR----NGETG--DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWD 89 (349)
Q Consensus 16 ~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw----~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd 89 (349)
.+.|.++.|-+ +..-|+.+..+|.|... +..+. +.+.++ ...|.+++|+||+..|+-...++++-+-+
T Consensus 75 ~~~ivs~~yl~---d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 75 NDKIVSFQYLA---DSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCcEEEEEecc---CCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 35677787776 66678889999999888 44333 334444 35799999999999999888888876654
Q ss_pred CCCCCEE------------------------EEec-------------------------cCCeEEEEEEcCCCCEEEEE
Q 018860 90 ALTGDVL------------------------HSFE-------------------------HKHIVRACSFSEDTHLLLTG 120 (349)
Q Consensus 90 ~~~~~~~------------------------~~~~-------------------------~~~~v~~~~~s~~~~~l~s~ 120 (349)
- +.+.+ ..|. ....-..++|..||.++|+.
T Consensus 149 ~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 R-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred c-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 1 11111 0110 00123468899999999987
Q ss_pred eC------CCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeC---CCeEEEEECCCCceEEeec-----C
Q 018860 121 GM------EKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTD---MGGVRLWDVRSGEIVQTLE-----T 186 (349)
Q Consensus 121 ~~------d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~vwd~~~~~~~~~~~-----~ 186 (349)
+. -+.+|+|+-. +.. ........+--.+++|-|.+. ++++... ...|.+|. |+|-....+. .
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L-~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GEL-QSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPE 303 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceE-EeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence 64 2678999853 111 111112223335678987665 5554432 34677776 4443333332 2
Q ss_pred CCCeeEEEEcCCCcEEEEecCCeEEEEecCCcee--eEEEcCC--CceEEeeecCCCCCEEEEecCCCeEEEEeCC----
Q 018860 187 KSPVTSAEVSQDGRYITTADGSTVKFWDANHFGL--VKSYNMP--CTIESASLEPKYGNKFVAGGEDMWVRFFDFH---- 258 (349)
Q Consensus 187 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~---- 258 (349)
...+..+.|++|+..|+......|.+|-..++.- .+.+..+ .....+.|+|.....|...+.++.+..+++.
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~ 383 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS 383 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE
Confidence 3468999999999999876655699999988752 2223322 2344588998877777777776666554421
Q ss_pred C----------------CcEEE--Ee-------------cCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 259 T----------------GNEIA--CN-------------KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 259 ~----------------~~~~~--~~-------------~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
. |..+. -+ -....+|.+++|++++..++.-..||+|.+|...
T Consensus 384 ~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 384 RSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred ecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 1 11110 00 0234689999999999889999999999998743
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=4.6e-07 Score=81.40 Aligned_cols=270 Identities=19% Similarity=0.240 Sum_probs=165.9
Q ss_pred eEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCC-----------CeEEEEE
Q 018860 21 DLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASAD-----------FSAKVWD 89 (349)
Q Consensus 21 ~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D-----------~~i~vWd 89 (349)
-+.||| -|.||+|-...| |.+|...+...++-|. |.+ |.=+.|||..+||+|-|.. ..+.|||
T Consensus 215 yv~wSP---~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 215 YVRWSP---KGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eEEecC---CceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 467776 899999998766 5789877665555453 543 6778999999999997642 5789999
Q ss_pred CCCCCEEEEecc---CCeE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEe-
Q 018860 90 ALTGDVLHSFEH---KHIV-RACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC- 164 (349)
Q Consensus 90 ~~~~~~~~~~~~---~~~v-~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~- 164 (349)
+.+|...+.|.. +..+ .-..||.|++++|--..+ +|.+|+...-.. ...-.-....|....|+|.+..+..=.
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~l-ld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFML-LDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceee-ecccccCCccccCcccCCCcceEEEEcc
Confidence 999998888763 2222 356799999999876664 588888643111 000011234577778887643222110
Q ss_pred -eCC--CeEEEEECCCCceEEeecCCC-CeeEEEEcCCCcEEEEecCC-----------eEEEEecCC-ceeeEEEcCCC
Q 018860 165 -TDM--GGVRLWDVRSGEIVQTLETKS-PVTSAEVSQDGRYITTADGS-----------TVKFWDANH-FGLVKSYNMPC 228 (349)
Q Consensus 165 -~~d--g~v~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~d~-----------~i~iwd~~~-~~~~~~~~~~~ 228 (349)
.++ -.+-+-.+.+++.+.+....+ .-..+-|..+|.+|+.-.|+ .+.|+.++. .-++....+..
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke 446 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKE 446 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecch
Confidence 000 133444444444443332211 11234566777777543221 245555543 22344455566
Q ss_pred ceEEeeecCCCCCEEEE-ecC--CCeEEEEeCCC-CcE---EEEecCCCcceeEEEEccCCCeEEE---ecCCCCEEEec
Q 018860 229 TIESASLEPKYGNKFVA-GGE--DMWVRFFDFHT-GNE---IACNKGHHGPVHCVRFSPGGESYAS---GSEDGTIRIWQ 298 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~-~~~--d~~i~v~d~~~-~~~---~~~~~~h~~~i~~l~~sp~~~~l~s---gs~Dg~v~vW~ 298 (349)
.+...+|.|. ++.|++ .+. ..++++|-..+ ... +..+. ....+.+-|+|.|++++. +|..|.+.++|
T Consensus 447 ~vi~FaWEP~-gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 447 SVIAFAWEPH-GDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred heeeeeeccC-CCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 6788899997 555543 333 45788887763 222 22332 245678999999999764 56789999999
Q ss_pred CCC
Q 018860 299 TGP 301 (349)
Q Consensus 299 ~~~ 301 (349)
++.
T Consensus 524 ~~~ 526 (698)
T KOG2314|consen 524 TDY 526 (698)
T ss_pred cch
Confidence 863
No 278
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2e-08 Score=93.61 Aligned_cols=182 Identities=15% Similarity=0.239 Sum_probs=134.4
Q ss_pred CCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCE
Q 018860 16 SRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDV 95 (349)
Q Consensus 16 ~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~ 95 (349)
.+.++|++++ +++++-|+-+|.+.+.+.+ +.. .+.-.|+.. +.+|.+++|||.||+|.|-.+.+.+.
T Consensus 39 ~D~is~~av~-----~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH-----DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh-----cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 3566777776 6789999999999999865 333 444456544 77899999999999999999999998
Q ss_pred EEEeccCCeEEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCC-CCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe
Q 018860 96 LHSFEHKHIVRACSFSED-----THLLLTGGMEKILRIFDLNRPD-APPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG 169 (349)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~-----~~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 169 (349)
.+.+....++.+++++|+ .+++++||.-| +.++.-+--+ .....+....++|.++.|. +.+++=++++ .
T Consensus 106 ~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~-G 180 (846)
T KOG2066|consen 106 ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDD-G 180 (846)
T ss_pred ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCC-C
Confidence 888888899999999998 56889999888 7776532111 1112345567889999995 4677767765 5
Q ss_pred EEEEECCCCceEEeecCCCC-------eeEEEEcCCCcEEEEecCCeEEEEecC
Q 018860 170 VRLWDVRSGEIVQTLETKSP-------VTSAEVSQDGRYITTADGSTVKFWDAN 216 (349)
Q Consensus 170 v~vwd~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~d~~i~iwd~~ 216 (349)
|+|||+.+++.+..++.... -..+.|.++ ..|+.|...+|++..++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEe
Confidence 99999999888776654221 224556554 45666777889998887
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.96 E-value=2.2e-06 Score=75.79 Aligned_cols=172 Identities=16% Similarity=0.247 Sum_probs=121.4
Q ss_pred EeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCC-eEEEEECCCCCEEEEeccC
Q 018860 24 YSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADF-SAKVWDALTGDVLHSFEHK 102 (349)
Q Consensus 24 fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~-~i~vWd~~~~~~~~~~~~~ 102 (349)
|++. +|.+++..|+ |.+-|.+...+..+. -+|.+.|.=..+..++.-++.|-.|| .+-|+|..+++..+..+.-
T Consensus 327 fa~~--~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l 401 (668)
T COG4946 327 FAVV--NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL 401 (668)
T ss_pred hccC--CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc
Confidence 5553 5778888877 555555544343332 25777788888888877889999999 8999999999877777777
Q ss_pred CeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCC----CeEEEEECCCC
Q 018860 103 HIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDM----GGVRLWDVRSG 178 (349)
Q Consensus 103 ~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~v~vwd~~~~ 178 (349)
+.|.++..+++|++++.+.....+-+.|+++....... +..-+-|+...|+|.. .+++-+--+ ..|+++|+..+
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id-kS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-ccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCC
Confidence 88999999999999999888888888888765432111 1223568889998654 445443323 47999999998
Q ss_pred ceEEeecCCCCeeEEEEcCCCcEE
Q 018860 179 EIVQTLETKSPVTSAEVSQDGRYI 202 (349)
Q Consensus 179 ~~~~~~~~~~~v~~~~~~~~~~~l 202 (349)
+.........-=-+-+|.|++++|
T Consensus 480 Kiy~vTT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 480 KIYDVTTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred eEEEecCCcccccCcccCCCCcEE
Confidence 876544333222345678888765
No 280
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.94 E-value=1.9e-09 Score=63.47 Aligned_cols=38 Identities=39% Similarity=0.807 Sum_probs=35.8
Q ss_pred cEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 261 NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 261 ~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
+++..+++|.++|++|+|+|++.+|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56778899999999999999999999999999999997
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=3e-07 Score=84.94 Aligned_cols=273 Identities=14% Similarity=0.106 Sum_probs=171.4
Q ss_pred eeeEEEeecCCCccEEEEEecCCCeEEEeCCCC---------------CeEEEeecccCCeEEEEECCCCCeeEEeeCCC
Q 018860 19 VVDLFYSPITPDGFFLISASKDSSPMLRNGETG---------------DWIGTFEGHKGAVWSCCLDTNALRAASASADF 83 (349)
Q Consensus 19 v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~---------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 83 (349)
..|+.|+- +..|++.|+.||-+++..+.+. ..-++++||++.|.-+.|..+.+.|-|...+|
T Consensus 17 L~c~~WNk---e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 17 LHCAEWNK---ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred EEEEEEcc---cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 45777764 6779999999999998864321 11257899999999999999999999999999
Q ss_pred eEEEEECCCCCEE-EEe--ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeE
Q 018860 84 SAKVWDALTGDVL-HSF--EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTI 160 (349)
Q Consensus 84 ~i~vWd~~~~~~~-~~~--~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (349)
.|-||-+..|.=. ..+ ..+..|.+++|..+|..|.-.-.||.|.+=.++......+.+.+. ...-+.|+++...+
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQA 171 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHH
Confidence 9999998776411 111 245679999999999998888888887776665544333444322 13356788766655
Q ss_pred EEEeeCCCeEEEEECCCCc-------eEEeec-----CCCCeeEEEEc--------CCCcEE-EEecCCeEEEEecCCce
Q 018860 161 LSTCTDMGGVRLWDVRSGE-------IVQTLE-----TKSPVTSAEVS--------QDGRYI-TTADGSTVKFWDANHFG 219 (349)
Q Consensus 161 l~~~~~dg~v~vwd~~~~~-------~~~~~~-----~~~~v~~~~~~--------~~~~~l-~~~~d~~i~iwd~~~~~ 219 (349)
++ +-..|.+.++|....- +.-... .+..+-.+.|. |+.-.+ +|-.+|.+.+..-.+..
T Consensus 172 Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 172 LF-KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred Hh-hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 54 4445899999975321 100000 01112233332 344444 44456766665433222
Q ss_pred eeEEEcCCCceEEeeecCCCCCEEEEecCCC---------eEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecC
Q 018860 220 LVKSYNMPCTIESASLEPKYGNKFVAGGEDM---------WVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSE 290 (349)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---------~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~ 290 (349)
....+..+-.+..+.|++. +..++.+|.+. .|++|. .-|+.+.+++--..-|++++|--.|-.+| -..
T Consensus 251 ~Pvv~dtgm~~vgakWnh~-G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA-~Av 327 (1189)
T KOG2041|consen 251 EPVVVDTGMKIVGAKWNHN-GAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIA-IAV 327 (1189)
T ss_pred CCeEEecccEeecceecCC-CcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEE-EEe
Confidence 2223333445566778774 78888877542 444443 34566666666667788888865554443 345
Q ss_pred CCCEEEecCC
Q 018860 291 DGTIRIWQTG 300 (349)
Q Consensus 291 Dg~v~vW~~~ 300 (349)
|+.|.+=+..
T Consensus 328 dsfiyfanIR 337 (1189)
T KOG2041|consen 328 DSFIYFANIR 337 (1189)
T ss_pred cceEEEEeec
Confidence 6666665543
No 282
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2e-07 Score=80.60 Aligned_cols=243 Identities=16% Similarity=0.168 Sum_probs=149.0
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCC-eeEEeeCCCeEEEEE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNAL-RAASASADFSAKVWD 89 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vWd 89 (349)
.+.+|...|.+++|||.. ..++..+|.+.+|+|.|.++...+.++..| ..+|+++|+.+.. +|-.|-..|.|.|+|
T Consensus 188 ~lp~~g~~IrdlafSp~~--~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFN--EGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred cccccchhhhhhccCccc--cceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 567899999999999832 227889999999999999999999999999 7899999987654 566777899999999
Q ss_pred CCCCCEE-EEec---cCCeEEEEEE------cCCCCEEEEEeCCCeEEEEECCCCCCCCc--eeccCCCCeEEEEEecCC
Q 018860 90 ALTGDVL-HSFE---HKHIVRACSF------SEDTHLLLTGGMEKILRIFDLNRPDAPPR--EVDRSPGSVRTVAWLHSD 157 (349)
Q Consensus 90 ~~~~~~~-~~~~---~~~~v~~~~~------s~~~~~l~s~~~d~~i~lwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~ 157 (349)
+...+-. ..+. ..++|..++. .+.|-+++..+.+ ...|.+........ .....++.+.++.+.+..
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~s 342 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVS 342 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCcc
Confidence 8765421 1111 1223333332 2233344433332 35566542221111 112235566677777666
Q ss_pred CeEEEEeeCCC------eEE-EEECCCCceEEeecC---CCC------eeEEEEcCCCcEEEEec--CCeEEEEecCCce
Q 018860 158 QTILSTCTDMG------GVR-LWDVRSGEIVQTLET---KSP------VTSAEVSQDGRYITTAD--GSTVKFWDANHFG 219 (349)
Q Consensus 158 ~~~l~~~~~dg------~v~-vwd~~~~~~~~~~~~---~~~------v~~~~~~~~~~~l~~~~--d~~i~iwd~~~~~ 219 (349)
..++++.-.+. .+- --|-+.|..+..... .++ -..+.-.++..++++-. .+.+.+||+.++.
T Consensus 343 nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e 422 (463)
T KOG1645|consen 343 NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE 422 (463)
T ss_pred ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh
Confidence 66666543211 111 122233333322110 111 01222234556665533 4789999999999
Q ss_pred eeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCC
Q 018860 220 LVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFH 258 (349)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 258 (349)
.++.+.....+..++....++.-++..=.|..+++|..+
T Consensus 423 vvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 423 VVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred eeeecccCcceeecceeecCCcchhhheecceEEEEecC
Confidence 999998887777666655555556666677788888754
No 283
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.92 E-value=8.7e-07 Score=75.14 Aligned_cols=217 Identities=18% Similarity=0.145 Sum_probs=128.1
Q ss_pred CCCeEEEeCCCCCeEEEeecc--cCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEE
Q 018860 40 DSSPMLRNGETGDWIGTFEGH--KGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLL 117 (349)
Q Consensus 40 d~~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 117 (349)
++++..+|..+++.+....-- .....+. ..+++..+++++.++.+..||..+|+.+-.+..+..+.... ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 577888998888877766531 1111111 22245577888999999999999999877765433221111 2244566
Q ss_pred EEEeCCCeEEEEECCCCCCCCceeccC-C--CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCC-C----
Q 018860 118 LTGGMEKILRIFDLNRPDAPPREVDRS-P--GSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKS-P---- 189 (349)
Q Consensus 118 ~s~~~d~~i~lwd~~~~~~~~~~~~~~-~--~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~---- 189 (349)
+.++.++.+..+|..+.+......... + ...........++.+++ +..++.|..+|+++|+.+-...... .
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV-GTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE-EETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEE-EeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 667788889999976655433211111 0 11111111112444554 4446999999999999876664422 1
Q ss_pred ------eeEEEEcCCCcEEEEecCCe-EEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcE
Q 018860 190 ------VTSAEVSQDGRYITTADGST-VKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNE 262 (349)
Q Consensus 190 ------v~~~~~~~~~~~l~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~ 262 (349)
...-.+..++.++++..++. +.+ |+.+++.+-... ....... ... .+..++.++.++.+..||..+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~-~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 159 ISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSV-DGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EEC-CCTEEEEEETTTEEEEEETTTTEE
T ss_pred eeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-cee-eCCEEEEEeCCCEEEEEECCCCCE
Confidence 11222333455555665664 566 999988654333 2222221 222 367777777999999999999886
Q ss_pred E
Q 018860 263 I 263 (349)
Q Consensus 263 ~ 263 (349)
+
T Consensus 235 ~ 235 (238)
T PF13360_consen 235 V 235 (238)
T ss_dssp E
T ss_pred E
Confidence 5
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.91 E-value=5.3e-07 Score=74.04 Aligned_cols=203 Identities=11% Similarity=0.030 Sum_probs=132.3
Q ss_pred eEEEeecCC--CccEEEEEecCCCeEEEeCCCCC-eEEEeecccCCeEEEEE-CCCCCeeEEeeCCCeEEEEECCCCCEE
Q 018860 21 DLFYSPITP--DGFFLISASKDSSPMLRNGETGD-WIGTFEGHKGAVWSCCL-DTNALRAASASADFSAKVWDALTGDVL 96 (349)
Q Consensus 21 ~~~fs~~~~--~~~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~D~~i~vWd~~~~~~~ 96 (349)
.+.|-|.+- .--+|+.|++.|...+|.+.+.+ ......-|...|.-+.- ......+.-++.|.++|+.++..+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 345666432 12378999999999999988654 34444555554433321 122335777899999999998654332
Q ss_pred EEeccC-CeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCce--eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 018860 97 HSFEHK-HIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPRE--VDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173 (349)
Q Consensus 97 ~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vw 173 (349)
.....+ -.+.++++++++.++++.+....|-.|.++........ .......-.+..|+.. ...++++..||++.||
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN-DLQFAVVFQDGTCAIY 230 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC-cceEEEEecCCcEEEE
Confidence 222212 23789999999999999999999999998754432221 2222333455667644 4567788889999999
Q ss_pred ECCCCceEEee-----c-CCCCeeEEEEcCCCc--EEEEec-CCeEEEEecCCceeeEEE
Q 018860 174 DVRSGEIVQTL-----E-TKSPVTSAEVSQDGR--YITTAD-GSTVKFWDANHFGLVKSY 224 (349)
Q Consensus 174 d~~~~~~~~~~-----~-~~~~v~~~~~~~~~~--~l~~~~-d~~i~iwd~~~~~~~~~~ 224 (349)
|+|.....+.. + +++.+..+.|++.|. +|.-++ -+.+.+-|+++++..+.+
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 99975433221 2 345788899998663 355554 478899999887655443
No 285
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1e-06 Score=79.22 Aligned_cols=275 Identities=17% Similarity=0.213 Sum_probs=159.1
Q ss_pred eeeEEEeecCCCccEEEEEecC-----------CCeEEEeCCCCCeEEEeec--ccCCeEE-EEECCCCCeeEEeeCCCe
Q 018860 19 VVDLFYSPITPDGFFLISASKD-----------SSPMLRNGETGDWIGTFEG--HKGAVWS-CCLDTNALRAASASADFS 84 (349)
Q Consensus 19 v~~~~fs~~~~~~~~l~s~s~d-----------~~i~iw~~~~~~~~~~~~~--h~~~v~~-~~~~~~~~~l~s~s~D~~ 84 (349)
|.-+.||| +.+||++-|.- ..++|||+.+|...++|.. ....++. ..||.|++++|--..| +
T Consensus 252 Vq~idfSP---~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-s 327 (698)
T KOG2314|consen 252 VQFIDFSP---NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-S 327 (698)
T ss_pred ceeeecCC---ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-e
Confidence 34556665 88999998653 3579999999999998876 3333443 4799999998866654 6
Q ss_pred EEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeC---C--CeEEEEECCCCCCCCceeccCCCCeEEEEEecCCC
Q 018860 85 AKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGM---E--KILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQ 158 (349)
Q Consensus 85 i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~---d--~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (349)
|-|++..+..++..-. .-..|+...|+|.+++||==.- + -.+-+-.+.+... .+...-+.-.=..+-|-.++.
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gd 406 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGD 406 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCc
Confidence 8899876643322211 2356888899999877653111 0 1112222211110 000000000001233433333
Q ss_pred eEEEEee---------CCCeEEEEECCCCc-eEEeecCCCCeeEEEEcCCCcEEE-E-ec--CCeEEEEecCC----cee
Q 018860 159 TILSTCT---------DMGGVRLWDVRSGE-IVQTLETKSPVTSAEVSQDGRYIT-T-AD--GSTVKFWDANH----FGL 220 (349)
Q Consensus 159 ~~l~~~~---------~dg~v~vwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~-~~--d~~i~iwd~~~----~~~ 220 (349)
++.+-.. .--.+.|+.++... ++..++....+...+|-|.|..++ . +. ..++.+|-+.+ .++
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 3322111 01135566665433 355566677788899999886543 2 22 36789998763 223
Q ss_pred eEEEcCCCceEEeeecCCCCCEEEEe---cCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecC------C
Q 018860 221 VKSYNMPCTIESASLEPKYGNKFVAG---GEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSE------D 291 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~------D 291 (349)
++.+.. .....+.|+|. |+.++.+ +..|.+..+|+.......+-.......+.+-|.|.|+|++++|. |
T Consensus 487 Vk~~dk-~~~N~vfwsPk-G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d 564 (698)
T KOG2314|consen 487 VKELDK-KFANTVFWSPK-GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVD 564 (698)
T ss_pred hhhhcc-cccceEEEcCC-CcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccc
Confidence 333322 23456778886 7777665 45789999998753333222222344678899999999998875 4
Q ss_pred CCEEEecCC
Q 018860 292 GTIRIWQTG 300 (349)
Q Consensus 292 g~v~vW~~~ 300 (349)
.--++|+.+
T Consensus 565 ~GYri~tfq 573 (698)
T KOG2314|consen 565 NGYRIFTFQ 573 (698)
T ss_pred cceEEEEee
Confidence 445666653
No 286
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=2.4e-09 Score=100.52 Aligned_cols=272 Identities=19% Similarity=0.210 Sum_probs=171.9
Q ss_pred eeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeC-CC-eEEEE
Q 018860 11 VCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASA-DF-SAKVW 88 (349)
Q Consensus 11 ~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-D~-~i~vW 88 (349)
+|+.|...-+|++|+- +-++|+.|+..|.|++++..+|....++.+|..+|+-+.=+.+|..+++.+. .. ...+|
T Consensus 1096 ~frd~~~~fTc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhhccccceeeEEeec---CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 4578888889999996 6679999999999999999999999999999999999998888887666543 32 57899
Q ss_pred ECCC-CCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceecc---CCCCeEEEEEecCCCeEEEEe
Q 018860 89 DALT-GDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDR---SPGSVRTVAWLHSDQTILSTC 164 (349)
Q Consensus 89 d~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~ 164 (349)
++.+ +...|+|. .-.++.|+.....-+.|.......+||+.+.......+.+ ..-.-+...|+|.+..++
T Consensus 1173 ~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred ccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence 9754 44556554 2356677655444444444456789999765433222211 111124456777666555
Q ss_pred eCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEE
Q 018860 165 TDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFV 244 (349)
Q Consensus 165 ~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
+|| .+||.|..+.++.+..-.....-.|+|.|.-++.. -.|||++++++++....-. -+.+.|+.. |+.++
T Consensus 1247 -ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIIN----SEIwD~RTF~lLh~VP~Ld-qc~VtFNst-G~VmY 1317 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIIN----SEIWDMRTFKLLHSVPSLD-QCAVTFNST-GDVMY 1317 (1516)
T ss_pred -eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEee----chhhhhHHHHHHhcCcccc-ceEEEeccC-ccchh
Confidence 234 58999988777766543333344688988766543 2489999998876543221 244556543 33332
Q ss_pred Eec------CC-----------CeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEe----cCC-----CCEEEec
Q 018860 245 AGG------ED-----------MWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASG----SED-----GTIRIWQ 298 (349)
Q Consensus 245 ~~~------~d-----------~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sg----s~D-----g~v~vW~ 298 (349)
+.- .| ...|-||....+.+.++.+ ...|..++-+|...+|+.- ..| -.+|++.
T Consensus 1318 a~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~vIe~~~~~d~dq~sT~~r~yE 1396 (1516)
T KOG1832|consen 1318 AMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGVIEMEDQEDMDQFSTSARMYE 1396 (1516)
T ss_pred hhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEEEeccChhhhhhhhhhhhhhh
Confidence 221 01 1123344444444444432 3456667777777776542 222 2677877
Q ss_pred CCC
Q 018860 299 TGP 301 (349)
Q Consensus 299 ~~~ 301 (349)
++.
T Consensus 1397 IGR 1399 (1516)
T KOG1832|consen 1397 IGR 1399 (1516)
T ss_pred hcc
Confidence 653
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.86 E-value=5.5e-08 Score=83.88 Aligned_cols=158 Identities=18% Similarity=0.277 Sum_probs=104.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc--eeccCCCCeEEEEEecCCCeEEE--EeeCCCeEEEEECCCCceEE
Q 018860 107 ACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR--EVDRSPGSVRTVAWLHSDQTILS--TCTDMGGVRLWDVRSGEIVQ 182 (349)
Q Consensus 107 ~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~--~~~~dg~v~vwd~~~~~~~~ 182 (349)
.+..++.++++|.+..++...++++.......+ .....+...+++.|...+...++ ..++...+.+|....+++.-
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence 345677888888888877777777654332111 11122233344555544444443 34455566777666577666
Q ss_pred eecCCCCeeEEEEcCCCcEEEEec-CCeEEEEecCCceeeEEEcC--CCceEEeeecCCCCCEEEEecCCCeEEEEeCCC
Q 018860 183 TLETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYNM--PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHT 259 (349)
Q Consensus 183 ~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 259 (349)
.+.|-+-+..+.++||++++.+++ |..|++-.......+..+-. ..-+..+++.+ +..|++++.|+++++||+.+
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc
Confidence 677777899999999999988876 89999876655544544433 23355566554 56789999999999999999
Q ss_pred CcEEEEe
Q 018860 260 GNEIACN 266 (349)
Q Consensus 260 ~~~~~~~ 266 (349)
++.+.++
T Consensus 225 gk~L~t~ 231 (390)
T KOG3914|consen 225 GKLLDTC 231 (390)
T ss_pred CCccccc
Confidence 9887553
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.81 E-value=1e-05 Score=74.20 Aligned_cols=258 Identities=14% Similarity=0.083 Sum_probs=148.8
Q ss_pred cEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEE--E
Q 018860 32 FFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRAC--S 109 (349)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~--~ 109 (349)
..++.++.++.+.-+|.++|+.+...+... .+.+.-.-.++ .++.+..++.+.-+|..+|+.+-.+....+...+ .
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVSDG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEECC-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 356677888999999999998776665432 22211111133 5666778999999999999987666532111000 0
Q ss_pred EcC--CCCEEEEEeCCCeEEEEECCCCCCCCce-eccCCC--C---eEEEEEec--CCCeEEEEeeCCCeEEEEECCCCc
Q 018860 110 FSE--DTHLLLTGGMEKILRIFDLNRPDAPPRE-VDRSPG--S---VRTVAWLH--SDQTILSTCTDMGGVRLWDVRSGE 179 (349)
Q Consensus 110 ~s~--~~~~l~s~~~d~~i~lwd~~~~~~~~~~-~~~~~~--~---i~~~~~~~--~~~~~l~~~~~dg~v~vwd~~~~~ 179 (349)
-+| .+..++.++.++.+..+|..+.+..... .....+ . ...+.-.| .++.++++ +.+|.+.-+|+.+|+
T Consensus 199 ~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~-~~~g~l~ald~~tG~ 277 (394)
T PRK11138 199 SAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL-AYNGNLVALDLRSGQ 277 (394)
T ss_pred CCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE-EcCCeEEEEECCCCC
Confidence 112 1235666777888888887654432111 000000 0 00000001 24455544 456899999999998
Q ss_pred eEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcC-CCc-eEEeeecCCCCCEEEEecCCCeEEEEeC
Q 018860 180 IVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNM-PCT-IESASLEPKYGNKFVAGGEDMWVRFFDF 257 (349)
Q Consensus 180 ~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~d~~i~v~d~ 257 (349)
.+-....... ..+.. .++.+++++.++.+..+|..+++.+-.... ... ..+..+ .+..++.++.||.++++|.
T Consensus 278 ~~W~~~~~~~-~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 278 IVWKREYGSV-NDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred EEEeecCCCc-cCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEEEC
Confidence 6544332221 11111 245556666788999999887765433221 111 111111 2567888999999999999
Q ss_pred CCCcEEEEecCCCcceeE-EEEccCCCeEEEecCCCCEEEecC
Q 018860 258 HTGNEIACNKGHHGPVHC-VRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 258 ~~~~~~~~~~~h~~~i~~-l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
.+|+.+...+-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 353 ~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 353 EDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 999987665433233332 122 2457888999999988764
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.79 E-value=9.1e-06 Score=67.74 Aligned_cols=218 Identities=15% Similarity=0.163 Sum_probs=118.7
Q ss_pred EEEECCCCCeeEEeeCCCeEEEEECCCCC--EEEEec---cC-CeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCC---
Q 018860 66 SCCLDTNALRAASASADFSAKVWDALTGD--VLHSFE---HK-HIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDA--- 136 (349)
Q Consensus 66 ~~~~~~~~~~l~s~s~D~~i~vWd~~~~~--~~~~~~---~~-~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~--- 136 (349)
.++.+++|+.||. =.|..|.|=..+..- ++.... .+ ..=+-++||||+.+||.+...|+|++||+.....
T Consensus 2 ~~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 2 HLALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred ceeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 3556677765554 345566665544321 112211 11 2347899999999999999999999999863221
Q ss_pred -CCceec-cCCCCeEEEEEecCC------CeEEEEeeCCCeEEEEECCC-----CceEEeec----CCCCeeEEEEcCCC
Q 018860 137 -PPREVD-RSPGSVRTVAWLHSD------QTILSTCTDMGGVRLWDVRS-----GEIVQTLE----TKSPVTSAEVSQDG 199 (349)
Q Consensus 137 -~~~~~~-~~~~~i~~~~~~~~~------~~~l~~~~~dg~v~vwd~~~-----~~~~~~~~----~~~~v~~~~~~~~~ 199 (349)
+..... .....|..+.|.+.. ..+++. .-.|.++-|-+.. .+..+.+. ....+.++.++|.-
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi-~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI-NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEE-eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 001111 112345556665432 123333 3347776665422 12233332 24578999999987
Q ss_pred cEEEEec--CC----------eEEEEecCCceeeEEEcCCCceEEeeecCCCCCEE-EEecCCCe------EEEEeCCCC
Q 018860 200 RYITTAD--GS----------TVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKF-VAGGEDMW------VRFFDFHTG 260 (349)
Q Consensus 200 ~~l~~~~--d~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~------i~v~d~~~~ 260 (349)
++|..+. .. -+.-|.+-...+ .+. +....|+. -.+|.+.+.
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P--------------------yyk~v~~~~~~~~~~~~~~~~~~~~~~ 219 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP--------------------YYKQVTSSEDDITASSKRRGLLRIPSF 219 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCC--------------------cEEEccccCccccccccccceeeccce
Confidence 7764432 11 122332221111 111 11111111 123333322
Q ss_pred cEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCCCCC
Q 018860 261 NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPVTND 305 (349)
Q Consensus 261 ~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~~~ 305 (349)
+...........|..|..||||..||+...+|.|.+|++..+...
T Consensus 220 ~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 220 KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 222212234578999999999999999999999999998765443
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.79 E-value=4.1e-07 Score=74.39 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=100.7
Q ss_pred EEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEE-----EEEEcCCCCEEEEEe-----CCC
Q 018860 55 GTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVR-----ACSFSEDTHLLLTGG-----MEK 124 (349)
Q Consensus 55 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~s~~-----~d~ 124 (349)
+.+.-|+++--+-..+.-+..++++..||.+-+.+.+.- ....+..++. +.++...++++.+++ .-+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHH---HhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 444445555444445555678999999999999997652 2222221111 122223445555433 223
Q ss_pred eEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEee--cCCCCeeEEEEcCCC--c
Q 018860 125 ILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTL--ETKSPVTSAEVSQDG--R 200 (349)
Q Consensus 125 ~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~--~ 200 (349)
..+.|+++..+.... .......+.+++-+|..+.++++|+++|.+-+||.|+......+ .++.++..+-|+|.. +
T Consensus 160 ~~~a~~~~p~~t~~~-~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIP-SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeecccccccccc-cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 456677653322111 11222347788878888889999999999999999987443322 246788999999864 6
Q ss_pred EEEEecCCeEEEEecCC
Q 018860 201 YITTADGSTVKFWDANH 217 (349)
Q Consensus 201 ~l~~~~d~~i~iwd~~~ 217 (349)
+++++.||.+-.||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 78889999999999875
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=2.9e-07 Score=77.05 Aligned_cols=201 Identities=17% Similarity=0.312 Sum_probs=131.2
Q ss_pred cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC----ceeccCC------------CCeEEEEEecCCC-eEEEE
Q 018860 101 HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPP----REVDRSP------------GSVRTVAWLHSDQ-TILST 163 (349)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~----~~~~~~~------------~~i~~~~~~~~~~-~~l~~ 163 (349)
....|+++.|...|.++++|...|.+.+|.-.....+. ..++.|. ..|..+.|..+.+ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999854332111 1233332 2477888886544 23444
Q ss_pred eeCCCeEEEEECCCCc--eEE-----------------e--------ec-----------------CCCCeeEEEEcCCC
Q 018860 164 CTDMGGVRLWDVRSGE--IVQ-----------------T--------LE-----------------TKSPVTSAEVSQDG 199 (349)
Q Consensus 164 ~~~dg~v~vwd~~~~~--~~~-----------------~--------~~-----------------~~~~v~~~~~~~~~ 199 (349)
.+.|++|++|.+.... .+. + +. +.--++++.++.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 5566999999876431 000 0 00 01124667778888
Q ss_pred cEEEEecCCeEEEEecCCc-eeeEEEcC-C-------CceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcE------EE
Q 018860 200 RYITTADGSTVKFWDANHF-GLVKSYNM-P-------CTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNE------IA 264 (349)
Q Consensus 200 ~~l~~~~d~~i~iwd~~~~-~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~ 264 (349)
..+.++++-.|.+|++... ........ | .-+.+..|+|.....|...+..|.|++.|++.... +.
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 8888888889999987532 11111111 1 12456677877667788889999999999984321 11
Q ss_pred E----------ecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 265 C----------NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 265 ~----------~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
. +.+-...|..+.|+|+|+++++-+. -+|++||+.+.
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 1 1122357888999999999876553 57999998654
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=6.6e-06 Score=75.52 Aligned_cols=207 Identities=11% Similarity=0.047 Sum_probs=121.2
Q ss_pred CeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCE-EEEEeC---CCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCC
Q 018860 83 FSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHL-LLTGGM---EKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQ 158 (349)
Q Consensus 83 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~---d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (349)
..|.+=|..... .+.+........-.|+|||+. ++..+. +..|.++|+.+... +.+...++......|+|++.
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCCC
Confidence 345554554433 332322346778999999984 554443 35677888765432 23333445566778998887
Q ss_pred eEEEEeeCC--CeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEE-Eec-CC--eEEEEecCCceeeEEEcCCCceEE
Q 018860 159 TILSTCTDM--GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYIT-TAD-GS--TVKFWDANHFGLVKSYNMPCTIES 232 (349)
Q Consensus 159 ~~l~~~~~d--g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~ 232 (349)
.++.+...+ ..|.++|+.+++...............|+|||+.++ +++ .+ .|.+.|+.++...+...... ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~~ 323 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--NN 323 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--cC
Confidence 777665433 468888988776543323332234567999997654 343 22 67778887766544332211 12
Q ss_pred eeecCCCCCEEEEecCC---------CeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEec-CCCCEEEe
Q 018860 233 ASLEPKYGNKFVAGGED---------MWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS-EDGTIRIW 297 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~d---------~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs-~Dg~v~vW 297 (349)
..|+|+ ++.++..+.. ..|.+.|+.++... .+... .......|+|||+.|+-.+ ..+.-.+|
T Consensus 324 ~~~SPD-G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 324 SSVSTY-KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred ceECCC-CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 478875 6666654432 37888898877643 33322 2334578999999876433 33443444
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=1.9e-05 Score=72.54 Aligned_cols=191 Identities=12% Similarity=0.076 Sum_probs=115.3
Q ss_pred CeEEEEECCCCCe-eEEeeC---CCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEE-EeCC--CeEEEEECCCCC
Q 018860 63 AVWSCCLDTNALR-AASASA---DFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLT-GGME--KILRIFDLNRPD 135 (349)
Q Consensus 63 ~v~~~~~~~~~~~-l~s~s~---D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~d--~~i~lwd~~~~~ 135 (349)
.+..-.|+||++. ++-.+. +..|.++|+.+++.......+.......|+|||+.|+- .+.+ ..|.++|+....
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 6778899999985 554333 45688999998877665555566677889999987654 3333 456666765432
Q ss_pred CCCceeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEE-ec-C----
Q 018860 136 APPREVDRSPGSVRTVAWLHSDQTILSTCTDMG--GVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITT-AD-G---- 207 (349)
Q Consensus 136 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-d---- 207 (349)
.+.+...........|+|++..++.++...+ .|.+.|+.+++..+....... ...|+|+|+.++- +. .
T Consensus 269 --~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 269 --LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred --EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence 2223223322334579988888877765444 688888888776443322211 2489999987653 22 2
Q ss_pred ----CeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecC---CCeEEEEeCCC
Q 018860 208 ----STVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGE---DMWVRFFDFHT 259 (349)
Q Consensus 208 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~v~d~~~ 259 (349)
..|.+.|+.+........ ........|+|+ ++.++..+. ...+.++++..
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~-~~~~~~p~~SPD-G~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTA-NGVNQFPRFSSD-GGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCC-CCCcCCeEECCC-CCEEEEEEccCCcEEEEEEecCC
Confidence 257777877665433222 222234667774 665554432 22355555543
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.74 E-value=5.4e-05 Score=64.57 Aligned_cols=213 Identities=15% Similarity=0.117 Sum_probs=131.4
Q ss_pred EEEECC-CCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCCCCc-ee-
Q 018860 66 SCCLDT-NALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFS-EDTHLLLTGGMEKILRIFDLNRPDAPPR-EV- 141 (349)
Q Consensus 66 ~~~~~~-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~d~~i~lwd~~~~~~~~~-~~- 141 (349)
+.+|++ ++.++++--..+.|..|+..+++... +.... ...+++. +++.+++ +...+ +.++|+.+.+.... ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEEEeecc
Confidence 467887 67777777778999999998775433 33333 5566666 6655554 44444 56668765432111 11
Q ss_pred -cc-CCCCeEEEEEecCCCeEEEEeeCC--------CeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEe--cCCe
Q 018860 142 -DR-SPGSVRTVAWLHSDQTILSTCTDM--------GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTA--DGST 209 (349)
Q Consensus 142 -~~-~~~~i~~~~~~~~~~~~l~~~~~d--------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~ 209 (349)
.. .....+.+++.+++. +.++.... |.|..++.. ++.......-...+.++++|+++.|..+ ..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence 11 233467788877655 54454332 568888877 5554444444456889999999876543 4678
Q ss_pred EEEEecCCcee----eEEE-cCCC---ceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEc-c
Q 018860 210 VKFWDANHFGL----VKSY-NMPC---TIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFS-P 280 (349)
Q Consensus 210 i~iwd~~~~~~----~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s-p 280 (349)
|..+++..... .+.+ ..+. .+..+++.. +++.+++....+.|.++|.. |+.+..+.--...+++++|. |
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 88888753211 1222 2222 256677776 47887877788999999987 88877665445589999994 6
Q ss_pred CCCeEE
Q 018860 281 GGESYA 286 (349)
Q Consensus 281 ~~~~l~ 286 (349)
+.+.|+
T Consensus 236 ~~~~L~ 241 (246)
T PF08450_consen 236 DGKTLY 241 (246)
T ss_dssp TSSEEE
T ss_pred CCCEEE
Confidence 656554
No 295
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=0.00011 Score=63.16 Aligned_cols=260 Identities=12% Similarity=0.160 Sum_probs=160.5
Q ss_pred CCeEEEeCCC--CCe-EEEeecccCCeEEEEECCCCCeeEEeeCC---CeEEEEECCC--CCEEEE--ec-cCCeEEEEE
Q 018860 41 SSPMLRNGET--GDW-IGTFEGHKGAVWSCCLDTNALRAASASAD---FSAKVWDALT--GDVLHS--FE-HKHIVRACS 109 (349)
Q Consensus 41 ~~i~iw~~~~--~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~D---~~i~vWd~~~--~~~~~~--~~-~~~~v~~~~ 109 (349)
.-|.+|+..+ ++. ...+-.+.+..+=++|+++++.|-++..+ |.|-.+.+.. |..... .. ...+-+-++
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvs 95 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVS 95 (346)
T ss_pred CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEE
Confidence 4578887653 322 12222355566778999999888887654 6677777654 433211 11 223337799
Q ss_pred EcCCCCEEEEEeC-CCeEEEEECCCCCCCCc--eeccCCCC----------eEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 018860 110 FSEDTHLLLTGGM-EKILRIFDLNRPDAPPR--EVDRSPGS----------VRTVAWLHSDQTILSTCTDMGGVRLWDVR 176 (349)
Q Consensus 110 ~s~~~~~l~s~~~-d~~i~lwd~~~~~~~~~--~~~~~~~~----------i~~~~~~~~~~~~l~~~~~dg~v~vwd~~ 176 (349)
++++|++++++.. -+.|.++-++....... ....|.+. +-...+.|.+..+++..-..-.|.+|++.
T Consensus 96 vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~ 175 (346)
T COG2706 96 VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD 175 (346)
T ss_pred ECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc
Confidence 9999999999874 57889998865432221 11122222 55666777666666554333479999998
Q ss_pred CCceEE----eecCCCCeeEEEEcCCCcEEEE-e-cCCeEEEEecCCc----eeeEEEc-CC------CceEEeeecCCC
Q 018860 177 SGEIVQ----TLETKSPVTSAEVSQDGRYITT-A-DGSTVKFWDANHF----GLVKSYN-MP------CTIESASLEPKY 239 (349)
Q Consensus 177 ~~~~~~----~~~~~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~----~~~~~~~-~~------~~~~~~~~~~~~ 239 (349)
.|+... .++....-+.+.|+|+++++.+ . -+++|.+|..+.. +.++.+. .+ .....+.+++ +
T Consensus 176 dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-d 254 (346)
T COG2706 176 DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-D 254 (346)
T ss_pred cCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-C
Confidence 776532 2333455688999999998654 3 4899999998763 2222221 11 2234455555 4
Q ss_pred CCEEEEec-CCCeEEEEeCCCC-cEEEE---ecCCCcceeEEEEccCCCeEEEecCCC-CEEEecCCC
Q 018860 240 GNKFVAGG-EDMWVRFFDFHTG-NEIAC---NKGHHGPVHCVRFSPGGESYASGSEDG-TIRIWQTGP 301 (349)
Q Consensus 240 ~~~~~~~~-~d~~i~v~d~~~~-~~~~~---~~~h~~~i~~l~~sp~~~~l~sgs~Dg-~v~vW~~~~ 301 (349)
+++|+++. ....|-+|.+... ..+.. ..-+...-....|+|.+++|+.+.+|+ +|.++..++
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 77666553 3447888876532 22222 223344467889999999988776654 689997643
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.73 E-value=2.4e-05 Score=78.41 Aligned_cols=266 Identities=14% Similarity=0.158 Sum_probs=160.8
Q ss_pred ceeeEEEeecCCCccEEEEEec---C---CCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeC---CCeEEEE
Q 018860 18 PVVDLFYSPITPDGFFLISASK---D---SSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASA---DFSAKVW 88 (349)
Q Consensus 18 ~v~~~~fs~~~~~~~~l~s~s~---d---~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---D~~i~vW 88 (349)
.-..|.|. .||+|+|..+- . ..+|+|+-+ |++..+-+.-.+--.+++|-|+|.+||+... ...|.+|
T Consensus 211 ~~~~ISWR---GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 211 GRVRISWR---GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred CceEEEEC---CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 33467676 49999998876 2 468899865 5544443322222356799999999998765 4567777
Q ss_pred ECCCCCEEEEec-----cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCce-ec-cCCCCeEEEEEecCCCeEE
Q 018860 89 DALTGDVLHSFE-----HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPRE-VD-RSPGSVRTVAWLHSDQTIL 161 (349)
Q Consensus 89 d~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~~l 161 (349)
.- +|.....|. ....|..++|++++..||..-.|. |++|-..+...-.+. +. .....+..+.|+|.....+
T Consensus 287 Er-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 287 ER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRL 364 (928)
T ss_pred ec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEE
Confidence 64 344333332 235789999999999999877665 999998765432221 11 1122344588988776655
Q ss_pred EEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCc-EEEEecCCeEEEEecCCce-----eeEEEcCCCceEEeee
Q 018860 162 STCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGR-YITTADGSTVKFWDANHFG-----LVKSYNMPCTIESASL 235 (349)
Q Consensus 162 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~ 235 (349)
......|.+..++..-.. ... -...|++. .++.-++..+++-.++... ....+..+..+..++|
T Consensus 365 ~v~t~~g~~~~~~~~~~v-----~~s-----~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf 434 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDV-----SRS-----PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAF 434 (928)
T ss_pred EEEecCCcEEEEEEEEEE-----Eec-----CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEE
Confidence 555544666555432100 000 00112222 2344456677777766532 1245566778889999
Q ss_pred cCCCCCEEEEecCCCeEEEEeCCCCcEE--------EEec----------CCCcceeEEEEccCCCeEEEecCC---CCE
Q 018860 236 EPKYGNKFVAGGEDMWVRFFDFHTGNEI--------ACNK----------GHHGPVHCVRFSPGGESYASGSED---GTI 294 (349)
Q Consensus 236 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~--------~~~~----------~h~~~i~~l~~sp~~~~l~sgs~D---g~v 294 (349)
.+. +..+++-..|+.|.+|........ ..+. .-...+..++|..+...++..+.+ ..+
T Consensus 435 ~~~-~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 513 (928)
T PF04762_consen 435 SPS-NSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKI 513 (928)
T ss_pred eCC-CCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceE
Confidence 875 445888889999999885432211 1111 113456788887776665555443 567
Q ss_pred EEecCC
Q 018860 295 RIWQTG 300 (349)
Q Consensus 295 ~vW~~~ 300 (349)
.+++..
T Consensus 514 ~~~~~~ 519 (928)
T PF04762_consen 514 VLVDID 519 (928)
T ss_pred EEEEec
Confidence 778763
No 297
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2.6e-05 Score=70.49 Aligned_cols=272 Identities=15% Similarity=0.168 Sum_probs=170.6
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEe-----eCC-----CeEE
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASA-----SAD-----FSAK 86 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-----s~D-----~~i~ 86 (349)
.+.+..+||+ +|++++ .+.+..++|++..+...+.+...- .++.+.|+|-+.+|.|= -.| ..++
T Consensus 35 ~~~~v~~~S~---~G~lfA-~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSN---NGRLFA-YSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcC---CCcEEE-EEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCcee
Confidence 3445566775 777666 556788899998877655444443 68899999988877641 122 3477
Q ss_pred EEECCCCCEEEEeccCC-eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecC-CCeEEEE-
Q 018860 87 VWDALTGDVLHSFEHKH-IVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHS-DQTILST- 163 (349)
Q Consensus 87 vWd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~- 163 (349)
+|+++++.....+.... .-.+..|+.|..+.+ =-..+.+.+|++...+.....+ |...+..+.++|. ....+++
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvy 185 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVY 185 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEE
Confidence 99998855444443221 125788888865432 1224568999987644333333 3456777777765 3344443
Q ss_pred ----eeCCCeEEEEECCCCceEEeecC----CCCeeEEEEcCCCc--EEEEe-c-CC---------eEEEEecCCceeeE
Q 018860 164 ----CTDMGGVRLWDVRSGEIVQTLET----KSPVTSAEVSQDGR--YITTA-D-GS---------TVKFWDANHFGLVK 222 (349)
Q Consensus 164 ----~~~dg~v~vwd~~~~~~~~~~~~----~~~v~~~~~~~~~~--~l~~~-~-d~---------~i~iwd~~~~~~~~ 222 (349)
.+.-..||+|-..-...-+.+.. ...-..+.|++-|. ++.++ + |. ++.+.++....+.-
T Consensus 186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred ccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 23346899998753222111111 12223456776553 23332 2 33 58888888666666
Q ss_pred EEcCCCceEEeeecCCCCCEEE--EecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecC---CCCEEEe
Q 018860 223 SYNMPCTIESASLEPKYGNKFV--AGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSE---DGTIRIW 297 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~---Dg~v~vW 297 (349)
.+.-...+.++.|+|+ ++.|+ .|-.=..+.+||++ +..+..+ -+++=+++-|+|.|++|+-++. -|.+-+|
T Consensus 266 ~L~k~GPVhdv~W~~s-~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPS-GREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred ecCCCCCceEEEECCC-CCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 6666677889999986 55444 34567789999986 4444443 2466688999999999887665 5689999
Q ss_pred cCCC
Q 018860 298 QTGP 301 (349)
Q Consensus 298 ~~~~ 301 (349)
|+..
T Consensus 342 Dv~n 345 (566)
T KOG2315|consen 342 DVPN 345 (566)
T ss_pred eccc
Confidence 9865
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.6e-07 Score=82.23 Aligned_cols=203 Identities=19% Similarity=0.202 Sum_probs=137.5
Q ss_pred cccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEE----EEeccCCeEEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 018860 59 GHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVL----HSFEHKHIVRACSFSEDTHLLLTGGM-EKILRIFDLNR 133 (349)
Q Consensus 59 ~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~lwd~~~ 133 (349)
-|.+.|+.|..... .++.+++.||.+|.|.-..-..+ +...|...+.+++.+.++.++.|.+. |+.+|++|+..
T Consensus 7 mhrd~i~hv~~tka-~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehh-heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 37777877765543 48999999999999975432222 23346678889999999999999887 99999999875
Q ss_pred CCCCCceeccCCCCeEEEEEecCCC----eEEEEeeCCCeEEEEECCCCceE-Eee--cCCCCeeEEEEcCCCcEEEEec
Q 018860 134 PDAPPREVDRSPGSVRTVAWLHSDQ----TILSTCTDMGGVRLWDVRSGEIV-QTL--ETKSPVTSAEVSQDGRYITTAD 206 (349)
Q Consensus 134 ~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~dg~v~vwd~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~ 206 (349)
.+... ..........+.|....+ .+.++.-+++.+.++|-+..-+. ..+ .+.++|..+.+++-+..+.+.+
T Consensus 86 ~Dmin--miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 86 FDMIN--MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred cchhh--hcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 54321 111111223344444433 45555667799999998765432 222 2457899999999887776655
Q ss_pred -CCeEEEEecCC-ceeeEE-----E----------cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEE
Q 018860 207 -GSTVKFWDANH-FGLVKS-----Y----------NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIAC 265 (349)
Q Consensus 207 -d~~i~iwd~~~-~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~ 265 (349)
.|.|..|.... ++..+. + .......++.|+|. +..+.+-+.|..||++++.+++.++.
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhhh
Confidence 79999998762 211111 1 11123456778874 77888888999999999998875443
No 299
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.70 E-value=1.6e-07 Score=86.93 Aligned_cols=208 Identities=17% Similarity=0.250 Sum_probs=134.1
Q ss_pred ccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC-CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeE
Q 018860 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDTNALRAASASADFSA 85 (349)
Q Consensus 7 ~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i 85 (349)
.+-.+++||...|+++-|.|..|+ .|++++.|-.+..||..+. .++.++..-......|+|+....-+...+....|
T Consensus 105 aIef~lhghsraitd~n~~~q~pd--Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPD--VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCc--ceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 345678999999999999998887 8999999999999998764 3455555444455678998655555666777889
Q ss_pred EEEECCCCC-EEEEec-cCCeEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCC-eEE
Q 018860 86 KVWDALTGD-VLHSFE-HKHIVRACSFSE-DTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQ-TIL 161 (349)
Q Consensus 86 ~vWd~~~~~-~~~~~~-~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l 161 (349)
++||...|- .++.++ |-..|+.++|.. ....+.+++.|++++.||................++..-.+.|-+. .++
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 999987664 555554 666788888865 3456788999999999998765543333333444454444554332 211
Q ss_pred E-EeeC--------CCeEEEEECCC-CceEEeecCCCC-eeEEEE--------c---CCCcEEEEecCCeEEEEecC
Q 018860 162 S-TCTD--------MGGVRLWDVRS-GEIVQTLETKSP-VTSAEV--------S---QDGRYITTADGSTVKFWDAN 216 (349)
Q Consensus 162 ~-~~~~--------dg~v~vwd~~~-~~~~~~~~~~~~-v~~~~~--------~---~~~~~l~~~~d~~i~iwd~~ 216 (349)
. .-+. ++....|+..+ .++++.+.++.. |....| . .+-++++=+.|.++++|-+.
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 1 1111 12223344433 346677766543 222211 1 12234555889999999774
No 300
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.66 E-value=2.1e-05 Score=72.11 Aligned_cols=260 Identities=12% Similarity=0.051 Sum_probs=149.5
Q ss_pred ccEEEEEecCCCeEEEeCCCCCeEEEeeccc--C--------CeE-EEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEe
Q 018860 31 GFFLISASKDSSPMLRNGETGDWIGTFEGHK--G--------AVW-SCCLDTNALRAASASADFSAKVWDALTGDVLHSF 99 (349)
Q Consensus 31 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~--~--------~v~-~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~ 99 (349)
+..+..++.++.+.-+|.++|+.+...+-.. . .+. .+.. ++..++.++.++.+.-+|.++|+.+-..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 3467778888998889998898765554221 0 000 0111 2345677788999999999999877666
Q ss_pred ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCC----CeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 018860 100 EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPG----SVRTVAWLHSDQTILSTCTDMGGVRLWDV 175 (349)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~l~~~~~dg~v~vwd~ 175 (349)
.....+.+--.- .+..++.+..++.+..+|..+.+...+.....+. ...+-.. .++.+++ +..+|.+...|.
T Consensus 147 ~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~-~~~~g~v~a~d~ 222 (394)
T PRK11138 147 KVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIV-GGDNGRVSAVLM 222 (394)
T ss_pred cCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEE-EcCCCEEEEEEc
Confidence 544333221111 2345666777888888888765532221111000 0000011 1234443 445688988999
Q ss_pred CCCceEEeecCCCC--------eeEEEEcC---CCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEE
Q 018860 176 RSGEIVQTLETKSP--------VTSAEVSQ---DGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFV 244 (349)
Q Consensus 176 ~~~~~~~~~~~~~~--------v~~~~~~~---~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
.+|+.+-......+ ...+..+| ++.+++++.++.+..+|..+++.+-....... ..... .+..++
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~---~~~~vy 298 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV---DGGRIY 298 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE---ECCEEE
Confidence 88876543321110 00111122 45566667788999999988876654433221 11111 256788
Q ss_pred EecCCCeEEEEeCCCCcEEEEecCC-CcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 245 AGGEDMWVRFFDFHTGNEIACNKGH-HGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 245 ~~~~d~~i~v~d~~~~~~~~~~~~h-~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
.++.++.+..+|..+++.+=....- .....+... .+..|+.++.||.|...|...+
T Consensus 299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDG 355 (394)
T ss_pred EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 8889999999999998765322111 111122222 2567888999999999887544
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.66 E-value=0.00018 Score=61.30 Aligned_cols=204 Identities=14% Similarity=0.131 Sum_probs=128.9
Q ss_pred EEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEEC-CCCCeeEEeeCCCeEEEEECCCCCEEEEec
Q 018860 22 LFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD-TNALRAASASADFSAKVWDALTGDVLHSFE 100 (349)
Q Consensus 22 ~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 100 (349)
+.|.+ .++.++++--..+.|..|+..+++.. .+.... ...+++. +++. |+.+..++ +.++|..+++......
T Consensus 5 p~~d~--~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 5 PVWDP--RDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEET--TTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEE
T ss_pred eEEEC--CCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEee
Confidence 45554 25777777777888999998876543 233222 5667777 5654 55555554 4566998886544433
Q ss_pred ------cCCeEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeC
Q 018860 101 ------HKHIVRACSFSEDTHLLLTGGME--------KILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTD 166 (349)
Q Consensus 101 ------~~~~v~~~~~s~~~~~l~s~~~d--------~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 166 (349)
.....+.+++.++|++.++.... +.+..++.. .. ...+.......+.++|+|++..++++-+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchheeecccc
Confidence 22467899999999988776543 334445543 11 22222223456789999988888777777
Q ss_pred CCeEEEEECCCC-c-e-----EEeecCCC-CeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCC-CceEEeeec
Q 018860 167 MGGVRLWDVRSG-E-I-----VQTLETKS-PVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMP-CTIESASLE 236 (349)
Q Consensus 167 dg~v~vwd~~~~-~-~-----~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~ 236 (349)
.+.|..+++... . . ...+.... ..-.+++..+|++.++. ..+.|.++|.. ++.+..+..+ ..+..++|-
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 789999998532 2 1 11222222 25678899999887765 57899999988 7777777777 567777774
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=7.2e-08 Score=81.67 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=113.2
Q ss_pred EEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC-----CEEE
Q 018860 23 FYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG-----DVLH 97 (349)
Q Consensus 23 ~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-----~~~~ 97 (349)
+|+ .+-.|.+ ++.+-+..+.+-+.+++ ....|. .+..|.++.|...+..++.|...|.|-+.|+..+ .+.+
T Consensus 218 awS-lni~gyh-fs~G~sqqv~L~nvetg-~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 218 AWS-LNIMGYH-FSVGLSQQVLLTNVETG-HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhh-hccceee-ecccccceeEEEEeecc-cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 565 3334555 45555566666666654 334444 5667888899988889999999999999998754 5677
Q ss_pred EeccCCeEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCC--CceeccCCCCeEEEEEe----cCCCeEEEEeeCCCeE
Q 018860 98 SFEHKHIVRACSFSE-DTHLLLTGGMEKILRIFDLNRPDAP--PREVDRSPGSVRTVAWL----HSDQTILSTCTDMGGV 170 (349)
Q Consensus 98 ~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd~~~~~~~--~~~~~~~~~~i~~~~~~----~~~~~~l~~~~~dg~v 170 (349)
.+-|...|+++..-. ++.+|.+.+.+|+|++||++..+.. ...+.+| ++..+.. .+..-+++++++|-..
T Consensus 294 rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH---vN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 294 RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH---VNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc---cccccccccccccccceEEEccCeeEE
Confidence 788999999988766 7788888999999999999754431 2333444 3333222 2333455568888999
Q ss_pred EEEECCCCceEEeecCCCC
Q 018860 171 RLWDVRSGEIVQTLETKSP 189 (349)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~ 189 (349)
|||.++.|..+.+++....
T Consensus 371 RiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred EEEecccCceeeccCCCCc
Confidence 9999999999988876543
No 303
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=4.2e-06 Score=77.62 Aligned_cols=197 Identities=13% Similarity=0.168 Sum_probs=127.4
Q ss_pred cccceeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEe--ecccCCeEEEEECCCCCeeEEeeCCC
Q 018860 6 IAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDTNALRAASASADF 83 (349)
Q Consensus 6 ~~~~~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~D~ 83 (349)
|.+.-.|.||.+.|.-+.|+. +.+.|-+...+|-|.+|-.-.+.|.... ...+..|.+++|..+|..+.-.=.||
T Consensus 61 LsmNQtLeGH~~sV~vvTWNe---~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDG 137 (1189)
T KOG2041|consen 61 LSMNQTLEGHNASVMVVTWNE---NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDG 137 (1189)
T ss_pred cchhhhhccCcceEEEEEecc---ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccC
Confidence 455566789999999999985 5677888888999999987666654332 23456689999999999887777777
Q ss_pred eEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC----c------eeccCCCCeEEEEE
Q 018860 84 SAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPP----R------EVDRSPGSVRTVAW 153 (349)
Q Consensus 84 ~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~----~------~~~~~~~~i~~~~~ 153 (349)
.|-|=.+...+....--.......+.|++|.+.++.+-..|.+.+||........ . .+...+..+..+.|
T Consensus 138 avIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 138 AVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred CEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 7755554433221110011123467899999998888899999999965322110 0 01111223445555
Q ss_pred e-------cCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEe
Q 018860 154 L-------HSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTA 205 (349)
Q Consensus 154 ~-------~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 205 (349)
. |++.-.++.|-++|.+.+..-.+......+..+-.+....|+++|.+|+.+
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEc
Confidence 3 455666777888787777644433222233333456778899999988654
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.64 E-value=3.1e-05 Score=64.63 Aligned_cols=194 Identities=15% Similarity=0.134 Sum_probs=113.7
Q ss_pred eEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecc-------cCCeEEEEECCC------CCeeEEeeCCCeEEE
Q 018860 21 DLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH-------KGAVWSCCLDTN------ALRAASASADFSAKV 87 (349)
Q Consensus 21 ~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h-------~~~v~~~~~~~~------~~~l~s~s~D~~i~v 87 (349)
-++||| |+..||.+...|+|+++|... ..+..+.+- ..+|-.+.|-.- ...|+.-..+|.+|-
T Consensus 48 kl~WSp---D~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 48 KLAWSP---DCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred EEEECC---CCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 577886 999999999999999999764 333344321 244666666321 124667778888887
Q ss_pred EECC-----CCCEEEEec----cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCC
Q 018860 88 WDAL-----TGDVLHSFE----HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQ 158 (349)
Q Consensus 88 Wd~~-----~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (349)
+-+. +.+..+.|. ++..|.++.++|..++|+.||....= +.. .......+++=.......
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~--------~~~---s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ--------DGM---SKASSCGLTAWRILSDSP 192 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC--------Ccc---ccccccCceEEEEcCCCC
Confidence 7653 234455554 46789999999999999888753320 000 000111122222121111
Q ss_pred eEE-EEeeCCC------eEEEEECCCCceEEee-cCCCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCCCc
Q 018860 159 TIL-STCTDMG------GVRLWDVRSGEIVQTL-ETKSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCT 229 (349)
Q Consensus 159 ~~l-~~~~~dg------~v~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 229 (349)
++. ++..+++ ...+|.+-+.+..... .....+..+.++|||.+|++. .+|.|.+|++...++.+.+....+
T Consensus 193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 193 YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 111 1111111 1233333332222111 124568899999999998774 699999999988777776655433
No 305
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.1e-05 Score=70.05 Aligned_cols=242 Identities=16% Similarity=0.153 Sum_probs=141.2
Q ss_pred EEEeecccCCeEEEEECCCCC-eeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEEC
Q 018860 54 IGTFEGHKGAVWSCCLDTNAL-RAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSED-THLLLTGGMEKILRIFDL 131 (349)
Q Consensus 54 ~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~ 131 (349)
..-+.+|...|..++|+|... .+..++.+..|+|.|+++.-++..+.....+.+++|.-+ .++|..|-..|.|.+||+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 334456788899999999776 788999999999999999888888877789999999875 567888889999999999
Q ss_pred CCCCCCCceecc--CCCCeEEEEEecCC-----CeEEEEeeCCCeEEEEECCC--Cce--EEeecCCCCeeEEEEcCCCc
Q 018860 132 NRPDAPPREVDR--SPGSVRTVAWLHSD-----QTILSTCTDMGGVRLWDVRS--GEI--VQTLETKSPVTSAEVSQDGR 200 (349)
Q Consensus 132 ~~~~~~~~~~~~--~~~~i~~~~~~~~~-----~~~l~~~~~dg~v~vwd~~~--~~~--~~~~~~~~~v~~~~~~~~~~ 200 (349)
+.+..+...+.. ...++..++..+++ +-+++.... .+..|++.- +.+ +..++..+.+.++.+.+..+
T Consensus 266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN 343 (463)
T ss_pred cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecCccc
Confidence 877654433322 22345555544333 122222222 355666532 222 22233344555666655333
Q ss_pred E-EEEec-CC---eEE---E-EecCCceee----EEE-cCC---CceEEeeecCCCCCEEE-EecCCCeEEEEeCCCCcE
Q 018860 201 Y-ITTAD-GS---TVK---F-WDANHFGLV----KSY-NMP---CTIESASLEPKYGNKFV-AGGEDMWVRFFDFHTGNE 262 (349)
Q Consensus 201 ~-l~~~~-d~---~i~---i-wd~~~~~~~----~~~-~~~---~~~~~~~~~~~~~~~~~-~~~~d~~i~v~d~~~~~~ 262 (349)
. |++.. +. +++ . -|-..+.++ ..+ ... ..-..+.+.+.+.++++ .+...+.+.+||..+.+.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 3 33322 11 111 1 111111111 111 100 00112223333345544 455678999999999998
Q ss_pred EEEecCCCcceeEEEEcc-C-CCeEEEecCCCCEEEecC
Q 018860 263 IACNKGHHGPVHCVRFSP-G-GESYASGSEDGTIRIWQT 299 (349)
Q Consensus 263 ~~~~~~h~~~i~~l~~sp-~-~~~l~sgs~Dg~v~vW~~ 299 (349)
++.+. -+.+|..++... + +.+|+.- .|..++|+..
T Consensus 424 vQ~l~-~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~ 460 (463)
T KOG1645|consen 424 VQTLA-LSEPVLDICPNDTNGSSYLALL-TDDRVHIYKN 460 (463)
T ss_pred eeecc-cCcceeecceeecCCcchhhhe-ecceEEEEec
Confidence 88765 337787776543 2 3355543 4666777754
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.63 E-value=9.8e-07 Score=72.20 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=91.8
Q ss_pred ccEEEEEecCCCeEEEeCCCC-CeEEEeec-ccCCeEEEEECCCCCeeEEee-----CCCeEEEEECCCCCEEEE-eccC
Q 018860 31 GFFLISASKDSSPMLRNGETG-DWIGTFEG-HKGAVWSCCLDTNALRAASAS-----ADFSAKVWDALTGDVLHS-FEHK 102 (349)
Q Consensus 31 ~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s-----~D~~i~vWd~~~~~~~~~-~~~~ 102 (349)
+..++.+..||...+.+.+.- ...+.+.. |.+.. +.+.-..+..+.+++ .-+..+.|++.....+.. ...-
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 456889999999998876531 01111110 11111 112222333333322 112234444432211111 1122
Q ss_pred CeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 018860 103 HIVRACSFSED-THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS 177 (349)
Q Consensus 103 ~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 177 (349)
..|.+++-+|. .+++++|+.||.+.+||.+....+...+..|+.++..+.|+|+++.-|.+|+.||.+.-||-.+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 35889999985 5667788899999999998776666667889999999999999998888999999999999654
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=1.3e-07 Score=80.13 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=107.9
Q ss_pred eeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCC---CCceeccCCCCeEEE
Q 018860 75 RAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDA---PPREVDRSPGSVRTV 151 (349)
Q Consensus 75 ~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~---~~~~~~~~~~~i~~~ 151 (349)
+-++.|.+..|-+-|+++|.. ..|....-|.++.|...+++++.|...|.|-.+|++.... ......-|+..++++
T Consensus 226 yhfs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred eeecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 347778888888999887743 3344566788899999899999999999999999975411 112223467788888
Q ss_pred EEecCCCeEEEEeeCCCeEEEEECCCCce---EEeecCCCC---eeEEEEcCC-CcEEEEecCCeEEEEecCCceeeEEE
Q 018860 152 AWLHSDQTILSTCTDMGGVRLWDVRSGEI---VQTLETKSP---VTSAEVSQD-GRYITTADGSTVKFWDANHFGLVKSY 224 (349)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~~~~---v~~~~~~~~-~~~l~~~~d~~i~iwd~~~~~~~~~~ 224 (349)
....-+++.|.+++.+|+|++||+|--++ +.+.+++.. -.-+-+.+. |..+++++|-..|||.++.+.++.+.
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 76663445555566679999999997666 777766521 111223343 44556677889999999999888877
Q ss_pred cCCC
Q 018860 225 NMPC 228 (349)
Q Consensus 225 ~~~~ 228 (349)
+.+.
T Consensus 385 pf~~ 388 (425)
T KOG2695|consen 385 PFPY 388 (425)
T ss_pred CCCC
Confidence 6654
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.61 E-value=2.8e-05 Score=65.81 Aligned_cols=212 Identities=15% Similarity=0.130 Sum_probs=124.3
Q ss_pred CCeEEEEECCCCCEEEEeccCCeEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCe
Q 018860 82 DFSAKVWDALTGDVLHSFEHKHIVRACS--FSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQT 159 (349)
Q Consensus 82 D~~i~vWd~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (349)
+++|..||..+|+.+-............ ..+++..+++++.++.+..||..+.+...+... +..+.... ...++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--ccccccee-eecccc
Confidence 6889999999998877765422111111 223566777778999999999866543211111 11111101 123455
Q ss_pred EEEEeeCCCeEEEEECCCCceEEee-cCC---CC-eeEEEEcCCCc-EEEEecCCeEEEEecCCceeeEEEcCCCce---
Q 018860 160 ILSTCTDMGGVRLWDVRSGEIVQTL-ETK---SP-VTSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYNMPCTI--- 230 (349)
Q Consensus 160 ~l~~~~~dg~v~vwd~~~~~~~~~~-~~~---~~-v~~~~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~--- 230 (349)
+++.. .++.++.+|.++|+.+-.. ... .. ........++. ++++..++.|..+|+.+++.+..+......
T Consensus 79 v~v~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGT-SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEE-TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccc-ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 55444 4579999999999987663 221 11 11111222244 445555899999999999987776553311
Q ss_pred --------EEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 231 --------ESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 231 --------~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
....+. . +..++.++.++.+..+|..+++.+-... ...+..+ ..+.+..|+.++.++.|..||+...
T Consensus 158 ~~~~~~~~~~~~~~-~-~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 158 PISSFSDINGSPVI-S-DGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp -EEEETTEEEEEEC-C-TTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTT
T ss_pred ceeeecccccceEE-E-CCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCC
Confidence 111111 1 2367777777754344999998663222 2223332 4467788888889999999998644
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.60 E-value=1.5e-06 Score=82.53 Aligned_cols=180 Identities=19% Similarity=0.308 Sum_probs=128.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCC-ee
Q 018860 113 DTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSP-VT 191 (349)
Q Consensus 113 ~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~-v~ 191 (349)
++..++-|+....+..+|+++.+... ...-..+.+.-+. .++.++.+|...|+|.+=|+++.+.++++..++. +.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r-~~~v~a~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR-TTNVSASGVTIMR---YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee-eeeccCCceEEEE---ecCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 44567778888888889987644322 1111122344444 4567777888889999999999999999987654 44
Q ss_pred EEEEcCCCcEE-EEec---------CCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCC-C
Q 018860 192 SAEVSQDGRYI-TTAD---------GSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHT-G 260 (349)
Q Consensus 192 ~~~~~~~~~~l-~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~ 260 (349)
++ .-.|++| +|+- |.-|++||+|..+.+.-++.+..+.-+.|.|.....++.++..|...+.|..+ +
T Consensus 222 Df--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 222 DF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred ee--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 43 3345554 5542 34589999999887777777666666788898888999999999999998432 1
Q ss_pred cE---EEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 261 NE---IACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 261 ~~---~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
+. ......-...|.++++|++++.||-|..+|.|.+|.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 11 222222344599999999999999999999999996
No 310
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.58 E-value=4e-05 Score=71.76 Aligned_cols=221 Identities=13% Similarity=0.076 Sum_probs=133.8
Q ss_pred ECCCCCeeE-EeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCe--EEEEECCCCCCCCceeccCC
Q 018860 69 LDTNALRAA-SASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKI--LRIFDLNRPDAPPREVDRSP 145 (349)
Q Consensus 69 ~~~~~~~l~-s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~--i~lwd~~~~~~~~~~~~~~~ 145 (349)
+++||+.+. +.-..+.+.+.|..+.+....+.-......++++|+|.++++.+.+.. ..+-.+...+ .
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e---------~ 270 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE---------R 270 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc---------C
Confidence 466776554 334567788888887777776665555677889999999988764221 0111111110 1
Q ss_pred CCeEEE------EEecCCCeEEEEeeCCCeEEEEECCC-----CceEEeecCCCCeeEEEEcCCCcEEEEec--CCeEEE
Q 018860 146 GSVRTV------AWLHSDQTILSTCTDMGGVRLWDVRS-----GEIVQTLETKSPVTSAEVSQDGRYITTAD--GSTVKF 212 (349)
Q Consensus 146 ~~i~~~------~~~~~~~~~l~~~~~dg~v~vwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i 212 (349)
..+..+ ++.+.+...+. .++.|.+.|.++ .+.+..+........+.++|||+++.++. +.++.+
T Consensus 271 d~~vvfni~~iea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSV 347 (635)
T PRK02888 271 DWVVVFNIARIEEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred ceEEEEchHHHHHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEE
Confidence 111111 11223333333 246899999998 45666777666678899999999887654 789999
Q ss_pred EecCCcee------------eEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCC----------CcEEEEecCCC
Q 018860 213 WDANHFGL------------VKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHT----------GNEIACNKGHH 270 (349)
Q Consensus 213 wd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~h~ 270 (349)
.|+.+... .........+...+|.++ ++.+.+---|..|..||+.. ...+..+.-|.
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y 426 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHY 426 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeeccCCCcceEEECCC-CCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCC
Confidence 99987542 233333334556777764 66777778899999999876 22333333333
Q ss_pred cc-----eeEEEEccCCCeEEEecCCCCEEEecCCCC
Q 018860 271 GP-----VHCVRFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 271 ~~-----i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
.+ ...=.-.|+|++|++...=..=|+-+++++
T Consensus 427 ~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl 463 (635)
T PRK02888 427 QPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPL 463 (635)
T ss_pred ccceeeecCCCcCCCCCCEEEEccccccccccCCCCC
Confidence 32 222224678888887654333344445544
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=6e-08 Score=91.44 Aligned_cols=197 Identities=18% Similarity=0.222 Sum_probs=134.9
Q ss_pred CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCCCEEEEEeC--CCeEEE
Q 018860 52 DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDTHLLLTGGM--EKILRI 128 (349)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~--d~~i~l 128 (349)
...++|+.|...-+|++|+-+...|+.|+..|.|+++++.+|....... |..+|+-+.=+.+|..+++.+. ..-..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 3456788899999999999999999999999999999999998766654 8889999988889987776543 334679
Q ss_pred EECCCCCCCCceeccCCCCeEEEEEecCCCe-EEEEeeCCCeEEEEECCCCceEEeecC-----CCCeeEEEEcCCCcEE
Q 018860 129 FDLNRPDAPPREVDRSPGSVRTVAWLHSDQT-ILSTCTDMGGVRLWDVRSGEIVQTLET-----KSPVTSAEVSQDGRYI 202 (349)
Q Consensus 129 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l 202 (349)
|++.....+.+.+. .-.++.|+...+. ++.++. ....+||+.++..+.++-. .-.-+.+.|+|+..++
T Consensus 1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~--d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEA--DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCcccccc----ccceeehhhhHHHHHhcccc--cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99865443333332 3456667654333 343444 3689999999877666321 1123677899988776
Q ss_pred EEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEE
Q 018860 203 TTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIA 264 (349)
Q Consensus 203 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~ 264 (349)
.- || .+||.+....++.|..-.....-.|+|. +..++.-+ .+||+++-+.+.
T Consensus 1246 ln--dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~-g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1246 LN--DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPS-GNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred ee--Cc--eeeeeccHHHHhhhhhheecccccccCC-CceEEeec-----hhhhhHHHHHHh
Confidence 42 33 4799998766665543222223456664 55555554 389988765543
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=6e-05 Score=71.63 Aligned_cols=193 Identities=15% Similarity=0.160 Sum_probs=129.3
Q ss_pred CccEEEEEecCCCeEEEeCCCCCeEEEeecccCC-eEEEEECCCCCeeEEeeCCCe-----EEEEECCCC------CEE-
Q 018860 30 DGFFLISASKDSSPMLRNGETGDWIGTFEGHKGA-VWSCCLDTNALRAASASADFS-----AKVWDALTG------DVL- 96 (349)
Q Consensus 30 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~D~~-----i~vWd~~~~------~~~- 96 (349)
.+..++-|+.+|.+.+.+- +...++.++.+... |..+-...+..+|++-+.|+. ++||+++.- +++
T Consensus 34 ~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 5678999999999888763 34556888888877 555555555578898887664 999997543 233
Q ss_pred --EEecc-----CCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---CCCCceeccCCCCeEEEEEecCCCeEEEEeeC
Q 018860 97 --HSFEH-----KHIVRACSFSEDTHLLLTGGMEKILRIFDLNRP---DAPPREVDRSPGSVRTVAWLHSDQTILSTCTD 166 (349)
Q Consensus 97 --~~~~~-----~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 166 (349)
+.+.+ +.++.+++.+.+-+.+|.|-.+|.|..+.=+-. ............+|+.+++..+....+..+..
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt 192 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT 192 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec
Confidence 33332 346889999999889999999999988863211 11122334556789999987666663333333
Q ss_pred CCeEEEEECCCCce-EEeecC-CCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEE
Q 018860 167 MGGVRLWDVRSGEI-VQTLET-KSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSY 224 (349)
Q Consensus 167 dg~v~vwd~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~ 224 (349)
..|.+|.+....+ ...+.. +.+++|..+++...-+.++.+.-+.+||.....+-..+
T Consensus 193 -~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 193 -EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred -ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeee
Confidence 5799999874442 333443 34677777777655466666778999998755443333
No 313
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.54 E-value=2.5e-05 Score=64.44 Aligned_cols=148 Identities=14% Similarity=0.043 Sum_probs=103.2
Q ss_pred EEEEecCCCeEEEeCCCCCeEEEeecccCC--eEEEEECCCCCeeEEeeCCCeEEEEECCCC-C-EEEEec--cCCeEEE
Q 018860 34 LISASKDSSPMLRNGETGDWIGTFEGHKGA--VWSCCLDTNALRAASASADFSAKVWDALTG-D-VLHSFE--HKHIVRA 107 (349)
Q Consensus 34 l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-~-~~~~~~--~~~~v~~ 107 (349)
+..++.|.++++.+.+.+..... .|... +.++++++|++++++.+.-..|-.|.+... + .+++.. ....-.+
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred eeeccCCcceeEEEEecCcccce--eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 45577788887776553322111 24333 788999999999999999999999987543 2 233222 2334567
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc----eeccCCCCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCCceE
Q 018860 108 CSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR----EVDRSPGSVRTVAWLHSDQ--TILSTCTDMGGVRLWDVRSGEIV 181 (349)
Q Consensus 108 ~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~----~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~v~vwd~~~~~~~ 181 (349)
..|+.....+|++.+||++.+||++....+.. .-..|.+.++.+.|++.+. .++.+ .--+.+.+-|+|+++..
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s-Ehfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS-EHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe-cCcceEEEEEcccCcee
Confidence 88999999999999999999999976544322 2244788999999986443 34433 33478999999998765
Q ss_pred Eee
Q 018860 182 QTL 184 (349)
Q Consensus 182 ~~~ 184 (349)
+.+
T Consensus 288 q~I 290 (344)
T KOG4532|consen 288 QVI 290 (344)
T ss_pred eEE
Confidence 544
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.53 E-value=8.1e-05 Score=63.88 Aligned_cols=185 Identities=18% Similarity=0.237 Sum_probs=121.8
Q ss_pred EEEeecCCCccEEEEEe-----cCCCeEEEeCC-CCCeEEEeecccCCeEEEEECCCCCeeEEe----------------
Q 018860 22 LFYSPITPDGFFLISAS-----KDSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDTNALRAASA---------------- 79 (349)
Q Consensus 22 ~~fs~~~~~~~~l~s~s-----~d~~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---------------- 79 (349)
-.||| ||++|.+.= ..|.|-+||.. +...+..+..|--.=..+.+.+|++.|+.+
T Consensus 56 g~fs~---dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLN 132 (305)
T PF07433_consen 56 GVFSP---DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLN 132 (305)
T ss_pred EEEcC---CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecC
Confidence 45786 999998763 34679999988 566778887654333456788888766665
Q ss_pred --eCCCeEEEEECCCCCEEEEec-----cCCeEEEEEEcCCCCEEEEEeCCCe-------EEEEECCCCCC----CCcee
Q 018860 80 --SADFSAKVWDALTGDVLHSFE-----HKHIVRACSFSEDTHLLLTGGMEKI-------LRIFDLNRPDA----PPREV 141 (349)
Q Consensus 80 --s~D~~i~vWd~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~d~~-------i~lwd~~~~~~----~~~~~ 141 (349)
..+-++-.-|..+|+.+.... |...++-+++.++|..++..-.++. +-+++....-. +....
T Consensus 133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQW 212 (305)
T ss_pred hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHH
Confidence 233345555667777665532 5567999999999876665433322 33333222100 01112
Q ss_pred ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEE
Q 018860 142 DRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVK 211 (349)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~ 211 (349)
....+.+-++++...+..+++|+-.-|.+.+||..+++.+...... .++.++..+++ +++++..|.+.
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG~G~~~ 280 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG-FLVSSGQGQLI 280 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc-eEEeCCCccEE
Confidence 2345678899999888888889988899999999999988666543 45667777766 66665555443
No 315
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.49 E-value=0.00017 Score=64.96 Aligned_cols=256 Identities=16% Similarity=0.173 Sum_probs=138.8
Q ss_pred CCccEEEEE---------ecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEe
Q 018860 29 PDGFFLISA---------SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSF 99 (349)
Q Consensus 29 ~~~~~l~s~---------s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~ 99 (349)
||+++++.. +..+.+-+++..+++....... ...+....|+|+|+.++-.. ++.|.+++..+++..+.-
T Consensus 2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 2 PDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 577777764 3335677888888655433333 56778899999999888765 678999998777443322
Q ss_pred ccC------------------CeEEEEEEcCCCCEEEEEeCC-CeEEEE-------------------------------
Q 018860 100 EHK------------------HIVRACSFSEDTHLLLTGGME-KILRIF------------------------------- 129 (349)
Q Consensus 100 ~~~------------------~~v~~~~~s~~~~~l~s~~~d-~~i~lw------------------------------- 129 (349)
... ..-.++.||||+++|+....| ..++.+
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~ 159 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVS 159 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEE
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceE
Confidence 110 112568899999998876533 222222
Q ss_pred ----ECCCCCCCCcee----ccCCCCeEEEEEecCCCeEEEEe-eCC---CeEEEEECCCCceEEeec--CCC---CeeE
Q 018860 130 ----DLNRPDAPPREV----DRSPGSVRTVAWLHSDQTILSTC-TDM---GGVRLWDVRSGEIVQTLE--TKS---PVTS 192 (349)
Q Consensus 130 ----d~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~-~~d---g~v~vwd~~~~~~~~~~~--~~~---~v~~ 192 (349)
|+...+...... ......+..+.|.+++..+++.- ..+ -.+.+.|..+++....+. ... ....
T Consensus 160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~ 239 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP 239 (353)
T ss_dssp EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence 222111100000 11222456778887766344433 222 246677887765432221 111 1223
Q ss_pred EEEc-CCC-cEEEEe-cCC--eEEEEecCCceeeEEEcCCCce-EEeeecCCCCCEEEEecC----CCeEEEEeCCCCcE
Q 018860 193 AEVS-QDG-RYITTA-DGS--TVKFWDANHFGLVKSYNMPCTI-ESASLEPKYGNKFVAGGE----DMWVRFFDFHTGNE 262 (349)
Q Consensus 193 ~~~~-~~~-~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----d~~i~v~d~~~~~~ 262 (349)
..+. +++ .++..+ .+| .|.+++.........-...-.+ ..+.+.+..+..++++.. ...++..++..+..
T Consensus 240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~ 319 (353)
T PF00930_consen 240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE 319 (353)
T ss_dssp EEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred cccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 4443 444 454443 454 4666677666543222223334 345566655555666665 34777777773455
Q ss_pred EEEecCCCcceeEEEEccCCCeEE
Q 018860 263 IACNKGHHGPVHCVRFSPGGESYA 286 (349)
Q Consensus 263 ~~~~~~h~~~i~~l~~sp~~~~l~ 286 (349)
+..+....+.-..+.|||++++++
T Consensus 320 ~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 320 PKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp EEESSTTSSTTEEEEE-TTSSEEE
T ss_pred eEeccCCCCCceEEEECCCCCEEE
Confidence 566654444336899999999876
No 316
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=3.2e-05 Score=72.60 Aligned_cols=282 Identities=15% Similarity=0.064 Sum_probs=171.1
Q ss_pred CCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECC------------CCCeeEEeeCC
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDT------------NALRAASASAD 82 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~------------~~~~l~s~s~D 82 (349)
|...-.++.|+| .| .+|=|| -..+.+.|..+.+.+.+++.|+..|+.+.|.| ...+||++.-.
T Consensus 14 ~~sN~~A~Dw~~---~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 14 SRSNRNAADWSP---SG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred CcccccccccCc---cc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 444455788886 33 555454 45677788888899999999999999999954 23468888899
Q ss_pred CeEEEEECCCCCEEEEecc-CCeEEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCC
Q 018860 83 FSAKVWDALTGDVLHSFEH-KHIVRACSFSE---DT-HLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSD 157 (349)
Q Consensus 83 ~~i~vWd~~~~~~~~~~~~-~~~v~~~~~s~---~~-~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 157 (349)
|.|-+||...+-.+.-+.| ..++..++|-+ +. ..|++-..-.++.+|+..+++.-.+ ..-......++.+.|-+
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-~~ys~~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-YDYSHEILSCFRVDPFD 167 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec-cccCCcceeeeeeCCCC
Confidence 9999999988777666664 56788888854 44 5666667778899999876654222 22222334456777766
Q ss_pred CeEEEEeeCCCeEEEEECC-C------CceEEeecCCC------------------C--------eeEEEEcCCC-cEEE
Q 018860 158 QTILSTCTDMGGVRLWDVR-S------GEIVQTLETKS------------------P--------VTSAEVSQDG-RYIT 203 (349)
Q Consensus 158 ~~~l~~~~~dg~v~vwd~~-~------~~~~~~~~~~~------------------~--------v~~~~~~~~~-~~l~ 203 (349)
...+...+..|.|.+-+.- . |+..+.-..++ + +-..+|+|.- +.+.
T Consensus 168 ~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf 247 (1062)
T KOG1912|consen 168 SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF 247 (1062)
T ss_pred cceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE
Confidence 5554444444666555432 1 22222111100 0 1122445543 3455
Q ss_pred EecCCeEEEEecCCceeeEEEcCCCc-eEEeeecCCC-CCEEEEecCCCeEEEEeCCC----------------CcEEEE
Q 018860 204 TADGSTVKFWDANHFGLVKSYNMPCT-IESASLEPKY-GNKFVAGGEDMWVRFFDFHT----------------GNEIAC 265 (349)
Q Consensus 204 ~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~d~~i~v~d~~~----------------~~~~~~ 265 (349)
..-.+.+.++|+.-..++.....+.. ..-+.+.|.. ...+++.-.||.+.+|-.+. +++...
T Consensus 248 i~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~ 327 (1062)
T KOG1912|consen 248 ITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHV 327 (1062)
T ss_pred EEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEE
Confidence 55677899999988877777766544 1223444433 34577888999999997554 111111
Q ss_pred ecC-CCcceeEEEEccC-CCeEEEecCCCCEEEecCCCC
Q 018860 266 NKG-HHGPVHCVRFSPG-GESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 266 ~~~-h~~~i~~l~~sp~-~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
+.. .+..+...+..|. ...++.-=.+|.+.+|.+...
T Consensus 328 vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ 366 (1062)
T KOG1912|consen 328 VRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNG 366 (1062)
T ss_pred EeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcC
Confidence 110 1122333344454 333444446788889988643
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=3e-06 Score=80.53 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=108.7
Q ss_pred CccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeC---------CCeEEEEECCCCCEEEEec
Q 018860 30 DGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASA---------DFSAKVWDALTGDVLHSFE 100 (349)
Q Consensus 30 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---------D~~i~vWd~~~~~~~~~~~ 100 (349)
+++++.+|...|++-+.|..+.+.+++++.|++.| ..|+-.|..|+|||. |.-|+|||++..+.+.-+.
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si--SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI--SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeeeccccce--eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 47899999999999999999999999999999998 677788999999985 4558999988766555554
Q ss_pred cCCeEEEEEEcCC-CCEEEEEeCCCeEEEEE---CCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 018860 101 HKHIVRACSFSED-THLLLTGGMEKILRIFD---LNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR 176 (349)
Q Consensus 101 ~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~ 176 (349)
.+..-.-+.|+|. ...++.++..|...+-| +..+......+......+.++.+++. +..++.+..+|.|.+|--+
T Consensus 264 ~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 264 FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSN-GDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCC-CceEEEecccCcEeeecCC
Confidence 4433456778885 46788888889999888 44433323334444455888888765 4566677778999999744
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.39 E-value=2.4e-05 Score=71.54 Aligned_cols=112 Identities=16% Similarity=0.225 Sum_probs=80.0
Q ss_pred eeEEEeecCCCccEEEE----EecCCCe----EEEeCCCCCeE--EEe-ecccCCeEEEEECCCCCeeEEeeCCCeEEEE
Q 018860 20 VDLFYSPITPDGFFLIS----ASKDSSP----MLRNGETGDWI--GTF-EGHKGAVWSCCLDTNALRAASASADFSAKVW 88 (349)
Q Consensus 20 ~~~~fs~~~~~~~~l~s----~s~d~~i----~iw~~~~~~~~--~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vW 88 (349)
.++.||-..+ ..+.+ .|.+|.. .+|....++.. ... =.....|.|++++|+...|+.|..||+|.+|
T Consensus 209 l~~~Fs~~~~--~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 209 LDVEFSLNQP--YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred EEEEccCCCC--cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 5778885333 23433 2445543 45555444322 111 1467789999999999999999999999999
Q ss_pred ECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 018860 89 DALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRP 134 (349)
Q Consensus 89 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~ 134 (349)
|...+..... ...-..+.++|||+|..+++|+..|.+.+||+...
T Consensus 287 D~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9877643332 44455788999999999999999999999998643
No 319
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.34 E-value=0.00022 Score=66.58 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=90.8
Q ss_pred CccEEEEEecCCCeEEEeCCCCCe-EEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEE-----EEe--cc
Q 018860 30 DGFFLISASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVL-----HSF--EH 101 (349)
Q Consensus 30 ~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~-----~~~--~~ 101 (349)
.++|++.|+.-|.+.+|+-..++. +....+-...+..++++++..++|.|+..|.|-|+-++.+... ... .|
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 688999999999999998766543 3344444555667778998888888999999999987765321 111 26
Q ss_pred CCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---CCCceeccCCCCeEEEEEe
Q 018860 102 KHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPD---APPREVDRSPGSVRTVAWL 154 (349)
Q Consensus 102 ~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~---~~~~~~~~~~~~i~~~~~~ 154 (349)
+..|++++|++++..+++|...|+|.+-.++... .....+-.-..+|..+.+.
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 7899999999999999999999999988876511 1122233345567777654
No 320
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.32 E-value=0.0017 Score=58.10 Aligned_cols=188 Identities=14% Similarity=0.211 Sum_probs=126.0
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCCCCcee----ccCCCC---e---EEEE-EecCCCeEEEEeeCCCeEEEEECCCC
Q 018860 110 FSEDTHLLLTGGMEKILRIFDLNRPDAPPREV----DRSPGS---V---RTVA-WLHSDQTILSTCTDMGGVRLWDVRSG 178 (349)
Q Consensus 110 ~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~----~~~~~~---i---~~~~-~~~~~~~~l~~~~~dg~v~vwd~~~~ 178 (349)
.+.||+.|+- +..|.|.+||..+........ ...+.. + .-+. |...++.+++..+. |+..+.+.-.+
T Consensus 274 ~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 4567877664 345679999986543321111 111111 1 1111 44556667777776 88888876655
Q ss_pred ceEEeecCCCCeeEEEEcCCCcEE-EEecCC-eEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEe
Q 018860 179 EIVQTLETKSPVTSAEVSQDGRYI-TTADGS-TVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFD 256 (349)
Q Consensus 179 ~~~~~~~~~~~v~~~~~~~~~~~l-~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d 256 (349)
..++ +.....|.-..+.-+++-+ .+..|+ .+-++|.++....+...--..+.++..+++ +++++++.....|-++|
T Consensus 352 ~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~d-GK~~vvaNdr~el~vid 429 (668)
T COG4946 352 YSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPD-GKKVVVANDRFELWVID 429 (668)
T ss_pred eeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCC-CcEEEEEcCceEEEEEE
Confidence 5443 3444456666666555444 344454 899999998876655544456788888874 78888898888999999
Q ss_pred CCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCC----CEEEecCCC
Q 018860 257 FHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDG----TIRIWQTGP 301 (349)
Q Consensus 257 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg----~v~vW~~~~ 301 (349)
+.+++....-+...+-|+..+|||+++++|-+--+| .|+++|...
T Consensus 430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 999988666667788999999999999999766555 578888643
No 321
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.29 E-value=0.0019 Score=55.66 Aligned_cols=221 Identities=17% Similarity=0.150 Sum_probs=134.4
Q ss_pred EEEECC-CCCeeEEeeCCCe-EEEEECCCCCEEEEeccCC---eEEEEEEcCCCCEEEEE-----eCCCeEEEEECCCCC
Q 018860 66 SCCLDT-NALRAASASADFS-AKVWDALTGDVLHSFEHKH---IVRACSFSEDTHLLLTG-----GMEKILRIFDLNRPD 135 (349)
Q Consensus 66 ~~~~~~-~~~~l~s~s~D~~-i~vWd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~s~-----~~d~~i~lwd~~~~~ 135 (349)
.++.+| +...++-+-.-|+ ..+||..+++....+..+. .----.||+||++|++. ...|.|-+||....-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 356666 4445555555554 6689999998877664221 12235699999999985 345889999987322
Q ss_pred CCCceeccCCCCeEEEEEecCCCeEEEEee-----------------CCCeEEEEECCCCceEEeec-----CCCCeeEE
Q 018860 136 APPREVDRSPGSVRTVAWLHSDQTILSTCT-----------------DMGGVRLWDVRSGEIVQTLE-----TKSPVTSA 193 (349)
Q Consensus 136 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----------------~dg~v~vwd~~~~~~~~~~~-----~~~~v~~~ 193 (349)
....++..+--..-.+.+.|++..++++-+ .+-.+-+-|.++|+.+.... +...+.-+
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence 222233333333344566666655554311 12356667888888776633 23468888
Q ss_pred EEcCCCcEEEEec-CC-------eEEEEecCCceeeEEEcC--------CCceEEeeecCCCCCEE-EEecCCCeEEEEe
Q 018860 194 EVSQDGRYITTAD-GS-------TVKFWDANHFGLVKSYNM--------PCTIESASLEPKYGNKF-VAGGEDMWVRFFD 256 (349)
Q Consensus 194 ~~~~~~~~l~~~~-d~-------~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~d~~i~v~d 256 (349)
++.++|..+.+.. .+ .|-+++... .++.+.. ...+-+++++.. +..+ +++-.-+.+.+||
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~-g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRD-GRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCC-CCEEEEECCCCCEEEEEE
Confidence 9999998877653 11 244444332 2333333 234668888764 5555 4555788999999
Q ss_pred CCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCC
Q 018860 257 FHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDG 292 (349)
Q Consensus 257 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg 292 (349)
..+++.+....- ..+..++-.+++ +++|.+...
T Consensus 246 ~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 246 AATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred CCCCCEeecccc--CceeeeeecCCc-eEEeCCCcc
Confidence 999998765432 234566666666 666666544
No 322
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=0.00035 Score=65.96 Aligned_cols=235 Identities=15% Similarity=0.166 Sum_probs=146.4
Q ss_pred CCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEEEEEEcCCC------------CEEEEEeCCCeEEE
Q 018860 62 GAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVRACSFSEDT------------HLLLTGGMEKILRI 128 (349)
Q Consensus 62 ~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~~~~~s~~~------------~~l~s~~~d~~i~l 128 (349)
..-.++.|++.|. ||=|+ -..|-|-|..+.+.+..++ |+..|+.+.|.|.. -+|+++...|.|.+
T Consensus 16 sN~~A~Dw~~~GL-iAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSGL-IAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccce-EEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 3345678888884 44444 4578899998888888887 66789999997532 25677778899999
Q ss_pred EECCCCCCCCceeccCCCCeEEEEEecC--CC-eEEEEeeCCCeEEEEECCCCceEEeecC-CCCeeEEEEcCCC--cEE
Q 018860 129 FDLNRPDAPPREVDRSPGSVRTVAWLHS--DQ-TILSTCTDMGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDG--RYI 202 (349)
Q Consensus 129 wd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~--~~l 202 (349)
||...... ...+..+..++..+.|.+. +. .+++.-....++-+|+..+|+.+-.... +....++.+.|-. ++.
T Consensus 94 ~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 99865332 3345667778899999863 22 3444444447999999999987655544 3455667777743 333
Q ss_pred EEecCCeEEEEecCC----ceeeEEEcC-----------------------CC------ceEEeeecCCCCCEEEEecCC
Q 018860 203 TTADGSTVKFWDANH----FGLVKSYNM-----------------------PC------TIESASLEPKYGNKFVAGGED 249 (349)
Q Consensus 203 ~~~~d~~i~iwd~~~----~~~~~~~~~-----------------------~~------~~~~~~~~~~~~~~~~~~~~d 249 (349)
..+..|.+.+-+.-. ..+.+.+++ +. ....++|+|...+. +.....
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~-lfi~~p 251 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI-LFITFP 251 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce-EEEEec
Confidence 444455554443311 011111110 00 01234556654443 334456
Q ss_pred CeEEEEeCCCCcEEEEecCCCcceeEEEEccC--CCeEEEecCCCCEEEecCC
Q 018860 250 MWVRFFDFHTGNEIACNKGHHGPVHCVRFSPG--GESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 250 ~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~--~~~l~sgs~Dg~v~vW~~~ 300 (349)
..+.++|++-...+....-..+.+.=+.+-|+ ...|.++-.||.+.+|-..
T Consensus 252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 77899999887777665433333334445454 5679999999999999653
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=4.3e-05 Score=72.48 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=78.7
Q ss_pred ecCCCccEEEEEecC----CCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEE-ec
Q 018860 26 PITPDGFFLISASKD----SSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHS-FE 100 (349)
Q Consensus 26 ~~~~~~~~l~s~s~d----~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~-~~ 100 (349)
++.|...+++.++.. |.+-|+. ++|++.+.....- .+.++||+|....|++|-.-|.+.+|...+.+.... ..
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~-hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t 99 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV-HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET 99 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce-ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence 344455578777644 6677775 4566554332211 145699999999999999999999999776543322 34
Q ss_pred cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 018860 101 HKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132 (349)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~ 132 (349)
|+.+|..+.|||+|..++++..=|.+.+|.+.
T Consensus 100 h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 100 HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 88999999999999999999999999999986
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.24 E-value=0.0032 Score=62.55 Aligned_cols=231 Identities=12% Similarity=0.141 Sum_probs=136.2
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeec-ccCCeEEEEECCCCCeeEEeeCCCeEEEEEC----C
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDTNALRAASASADFSAKVWDA----L 91 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~----~ 91 (349)
+.|.++.|-. +..-++.+..+|.|.+-|.++... .+-| -...|.+++|+||.+.++-...++++-+=+- -
T Consensus 69 ~~i~s~~fl~---d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLA---DTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred cceEEEEEec---ccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 5788888875 555677788999999998876543 1222 2457999999999999998888888755432 0
Q ss_pred CCCEE-------------------EEec-------------cCC---------eEEEEEEcCCCCEEEEE-----eCCCe
Q 018860 92 TGDVL-------------------HSFE-------------HKH---------IVRACSFSEDTHLLLTG-----GMEKI 125 (349)
Q Consensus 92 ~~~~~-------------------~~~~-------------~~~---------~v~~~~~s~~~~~l~s~-----~~d~~ 125 (349)
..+.+ ..|. +.. .=.++.|..||.++++. ..-+.
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11111 0111 000 01348899999999883 23389
Q ss_pred EEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEe--eCCCeEEEEECCCCceEEe----ecCC-CCeeEEEEcCC
Q 018860 126 LRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTC--TDMGGVRLWDVRSGEIVQT----LETK-SPVTSAEVSQD 198 (349)
Q Consensus 126 i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg~v~vwd~~~~~~~~~----~~~~-~~v~~~~~~~~ 198 (349)
|++||-. + .......+..+.-.+++|-|.+..+.+.. .+++.|.++.. +|-.... ++.. .++..++|+.+
T Consensus 224 irV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 224 IRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCC
Confidence 9999964 1 11111112223345788988555443322 34467888874 3332222 2222 24889999999
Q ss_pred CcEEEE---e-cCCeEEEEecCCcee--eEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEe
Q 018860 199 GRYITT---A-DGSTVKFWDANHFGL--VKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFD 256 (349)
Q Consensus 199 ~~~l~~---~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d 256 (349)
+..|+. . ....|++|-+.++.- .+.+..+... .+-|+|.....+..-..+|..-++|
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~-~~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA-LLMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeEEEEEEEEeccccc-cccccCCCceeEEEEecCCcEEEEE
Confidence 988765 3 345699999987653 2223333221 2556665444444443555444444
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.18 E-value=0.00095 Score=66.10 Aligned_cols=234 Identities=17% Similarity=0.178 Sum_probs=135.8
Q ss_pred CCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CCCCC
Q 018860 62 GAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNR---PDAPP 138 (349)
Q Consensus 62 ~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~---~~~~~ 138 (349)
+.|.++.|..+...++.+..+|.|-+-|..+....-.-.-.+.|.+.+|+||+..++-.+.++++.+-+-.- ...+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 578899998888888888899999898887776544444567899999999999999888888776544210 00000
Q ss_pred ceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCC-ceEEeecCCCCeeEEEEcCCCcEEEEe-----cC-CeEE
Q 018860 139 REVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSG-EIVQTLETKSPVTSAEVSQDGRYITTA-----DG-STVK 211 (349)
Q Consensus 139 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~d-~~i~ 211 (349)
..-....+....+.|-....++= |+. |...--+.... +........+.-..+.|--||++++.+ .+ +.|+
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfr--gs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFR--GSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred ccccccccccceecccccceeee--cch-hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 00001112334455533222221 111 11111111100 000000111223468888999887663 35 7999
Q ss_pred EEecCCceeeEEEcCC--CceEEeeecCCCCCEEEEe---cCCCeEEEEeCCCC---cEEEEecCCCcceeEEEEccCCC
Q 018860 212 FWDANHFGLVKSYNMP--CTIESASLEPKYGNKFVAG---GEDMWVRFFDFHTG---NEIACNKGHHGPVHCVRFSPGGE 283 (349)
Q Consensus 212 iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~d~~i~v~d~~~~---~~~~~~~~h~~~i~~l~~sp~~~ 283 (349)
+||.. +. ++....+ ..-.+++|.|. |..+++- ++|+.|.+|.-+.- +..-.......+|..++|+.++.
T Consensus 226 V~drE-g~-Lns~se~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 226 VYDRE-GA-LNSTSEPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred Eeccc-ch-hhcccCcccccccceeecCC-CCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 99976 22 2222222 12346788884 7777664 35678888875421 11111222334599999999999
Q ss_pred eEEE---ecCCCCEEEecCCC
Q 018860 284 SYAS---GSEDGTIRIWQTGP 301 (349)
Q Consensus 284 ~l~s---gs~Dg~v~vW~~~~ 301 (349)
.||. ......|++|-+++
T Consensus 303 iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ceeeeecccccceEEEEEecC
Confidence 9886 44455599997653
No 326
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.16 E-value=0.004 Score=54.00 Aligned_cols=224 Identities=15% Similarity=0.127 Sum_probs=127.2
Q ss_pred CccEEEEEecCCCeEEEeC-CCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEE-----------
Q 018860 30 DGFFLISASKDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLH----------- 97 (349)
Q Consensus 30 ~~~~l~s~s~d~~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~----------- 97 (349)
.++.|+.|+.+| +.+++. ....+.+..+ ...|..+..-++-..|+.-+ |+.+.++++.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 467899999999 777776 3333433332 33399999888777666665 5999999986654333
Q ss_pred ----EeccCCeEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCCC----CCceeccCCCCeEEEEEecCCCeEEEEeeCC
Q 018860 98 ----SFEHKHIVRACS--FSEDTHLLLTGGMEKILRIFDLNRPDA----PPREVDRSPGSVRTVAWLHSDQTILSTCTDM 167 (349)
Q Consensus 98 ----~~~~~~~v~~~~--~s~~~~~l~s~~~d~~i~lwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 167 (349)
.+.....+...+ -.+.+...+.....+.|.+|....+.. ..+++ ..+..+.++.|. ++.+++ +..
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v-~~~- 156 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICV-GTS- 156 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEE-EeC-
Confidence 122223344444 123444445555566899988765321 22222 345778899998 334443 333
Q ss_pred CeEEEEECCCCceEEeecC-------------CCCeeEEEEcCCCcEEEEecCCeEEEEecCCceee-EEEcCCCceEEe
Q 018860 168 GGVRLWDVRSGEIVQTLET-------------KSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLV-KSYNMPCTIESA 233 (349)
Q Consensus 168 g~v~vwd~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~ 233 (349)
+...+.|+.++.....+.. ..++..+.. +++.+|.+-++ .-.+.|....... ..+.-+..+..+
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~-~g~fv~~~G~~~r~~~i~W~~~p~~~ 234 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYDN-IGVFVNKNGEPSRKSTIQWSSAPQSV 234 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEecc-eEEEEcCCCCcCcccEEEcCCchhEE
Confidence 5688899987655433221 112333333 34566665432 3333343322111 233333444555
Q ss_pred eecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecC
Q 018860 234 SLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKG 268 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~ 268 (349)
++.. .++++.+. +.|.+|++.+++.++.+..
T Consensus 235 ~~~~---pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 235 AYSS---PYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEEC---CEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 5542 35555554 5699999999998877653
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.03 E-value=0.0069 Score=57.24 Aligned_cols=186 Identities=15% Similarity=0.016 Sum_probs=108.2
Q ss_pred ecCCCccEEEEEec-CCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCC----eEEEEECCCCCEEEEec
Q 018860 26 PITPDGFFLISASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADF----SAKVWDALTGDVLHSFE 100 (349)
Q Consensus 26 ~~~~~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~----~i~vWd~~~~~~~~~~~ 100 (349)
|.++||+.|...+. .+.+.+.|.++.+.+.++.--. .-.-+.++++++++++.+.+. ++..-+..+...+..|.
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 55567776643322 2345566777666655554322 224468888999888776421 22222222211122221
Q ss_pred cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---CCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 018860 101 HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRP---DAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS 177 (349)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 177 (349)
-.. .-++.++|++... .+..|.+.|..+. ................+.++|++.++++++.-+.+|-|.|+.+
T Consensus 278 i~~---iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 278 IAR---IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred hHH---HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 110 0123456776655 2567899998751 1122233334556677888999999999988889999999987
Q ss_pred Cce------------EEeecCCCCeeEEEEcCCCcEEEE-ecCCeEEEEecCC
Q 018860 178 GEI------------VQTLETKSPVTSAEVSQDGRYITT-ADGSTVKFWDANH 217 (349)
Q Consensus 178 ~~~------------~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~ 217 (349)
.+. +...+....-....|.++|...++ --|..|-.|++.+
T Consensus 353 ~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 552 334443333345678888865544 3588999999865
No 328
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.02 E-value=0.0061 Score=57.50 Aligned_cols=227 Identities=15% Similarity=0.118 Sum_probs=125.3
Q ss_pred cEEEEEecCCCeEEEeCCCCCeEEEeecccCC-----eE-EEEECCCCCeeEEee---------CCCeEEEEECCCCCEE
Q 018860 32 FFLISASKDSSPMLRNGETGDWIGTFEGHKGA-----VW-SCCLDTNALRAASAS---------ADFSAKVWDALTGDVL 96 (349)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~-----v~-~~~~~~~~~~l~s~s---------~D~~i~vWd~~~~~~~ 96 (349)
..++.++.++.+.-+|.++++.+..++..... +. +..+. ++ .++.++ .++.+.-.|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KK-LVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CC-EEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 56777888999999999999887666543221 11 11122 23 343433 4688999999999877
Q ss_pred EEeccC-C--------------------eE-EEEEEcCCCCEEEEEeCCC------------------eEEEEECCCCCC
Q 018860 97 HSFEHK-H--------------------IV-RACSFSEDTHLLLTGGMEK------------------ILRIFDLNRPDA 136 (349)
Q Consensus 97 ~~~~~~-~--------------------~v-~~~~~s~~~~~l~s~~~d~------------------~i~lwd~~~~~~ 136 (349)
-.+... . .+ ...++.+.+.+++.++.++ .+..+|..+.+.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 665421 0 01 1233444556677776554 577777765543
Q ss_pred CCcee-ccCC--------CCe-EEEEEecCCC--eEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEE
Q 018860 137 PPREV-DRSP--------GSV-RTVAWLHSDQ--TILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITT 204 (349)
Q Consensus 137 ~~~~~-~~~~--------~~i-~~~~~~~~~~--~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 204 (349)
.-... ..+. .++ ..+. .-.+. .++..+..+|.+...|.++|+.+-...... ..+...| +.+.+.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~-~~vyv~ 344 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP-GLVYLG 344 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC-ceEEEc
Confidence 22111 1110 001 1110 00111 245566667999999999998765443210 0112222 111111
Q ss_pred ------------------ecCCeEEEEecCCceeeEEEcCCC---------ce--EEeeecCCCCCEEEEecCCCeEEEE
Q 018860 205 ------------------ADGSTVKFWDANHFGLVKSYNMPC---------TI--ESASLEPKYGNKFVAGGEDMWVRFF 255 (349)
Q Consensus 205 ------------------~~d~~i~iwd~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~d~~i~v~ 255 (349)
..++.+.-.|+.+++.+-...... .. ..+.. .+..+++++.|+.++.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~al 421 (488)
T cd00216 345 AFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAF 421 (488)
T ss_pred cccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEE
Confidence 124566667777766655444331 11 11111 35778888999999999
Q ss_pred eCCCCcEEEEec
Q 018860 256 DFHTGNEIACNK 267 (349)
Q Consensus 256 d~~~~~~~~~~~ 267 (349)
|..+|+.+-..+
T Consensus 422 d~~tG~~lW~~~ 433 (488)
T cd00216 422 DATTGKELWKFR 433 (488)
T ss_pred ECCCCceeeEEE
Confidence 999999876544
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.001 Score=63.13 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=116.5
Q ss_pred CCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCcee
Q 018860 62 GAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREV 141 (349)
Q Consensus 62 ~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~ 141 (349)
..+.|++++ ++.|+-|.-+|.|.+.+..... ...+.|... ..+|.+++||+.||++.+..+.+++... .
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~--~ 108 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT--Q 108 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce--e
Confidence 345566665 4578889999999999976433 444445433 5689999999999999999887654321 1
Q ss_pred ccCCCCeEEEEEecC----CCeEEEEeeCCCeEEEEECCC---CceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEe
Q 018860 142 DRSPGSVRTVAWLHS----DQTILSTCTDMGGVRLWDVRS---GEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWD 214 (349)
Q Consensus 142 ~~~~~~i~~~~~~~~----~~~~l~~~~~dg~v~vwd~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd 214 (349)
..-..++.++++.|+ ....+++|+..| +.++.-+- ...+.-....+++.++.|. |.+++=++|-.|++||
T Consensus 109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd 185 (846)
T KOG2066|consen 109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYD 185 (846)
T ss_pred EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEe
Confidence 222456888888775 234455677767 77765432 1222122345788888886 5677777788899999
Q ss_pred cCCceeeEEEcCCCc-------eEEeeecCCCCCEEEEecCCCeEEEEeCC
Q 018860 215 ANHFGLVKSYNMPCT-------IESASLEPKYGNKFVAGGEDMWVRFFDFH 258 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 258 (349)
+.+.+.+.....+.+ ...+.|.+ ...++. |+-.+|++..++
T Consensus 186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVI-GWGDSVKICSIK 233 (846)
T ss_pred ccccceeeccCCCCCCCCcccCCCceEecC--CCeEEE-ecCCeEEEEEEe
Confidence 988776665544331 23455554 334444 455577777776
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.02 E-value=0.004 Score=57.43 Aligned_cols=217 Identities=12% Similarity=0.148 Sum_probs=112.0
Q ss_pred CCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCCCCCce
Q 018860 62 GAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFD-LNRPDAPPRE 140 (349)
Q Consensus 62 ~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd-~~~~~~~~~~ 140 (349)
-....+.++|+++.++. ..||.--|+......... + +.-....|.+.+ .+|+-....+|+++. +.... .+.
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-~---G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~--~k~ 104 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-F---GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV--VKS 104 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-E---EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T--T--
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-c---CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc--ceE
Confidence 34578899999998888 447777788744332222 1 233456788844 466666688899963 32111 111
Q ss_pred eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCc--
Q 018860 141 VDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHF-- 218 (349)
Q Consensus 141 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~-- 218 (349)
+. .+..+..+- . +.+|...++ +.|.+||..+++.+..+.... |..+.|++++.+++...+.++.+++.+..
T Consensus 105 i~-~~~~~~~If--~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~ 177 (443)
T PF04053_consen 105 IK-LPFSVEKIF--G--GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAV 177 (443)
T ss_dssp ----SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHH
T ss_pred Ec-CCcccceEE--c--CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhc
Confidence 11 111233332 2 444544444 589999999999999998653 88999999999988777777777765543
Q ss_pred ----------eeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEe
Q 018860 219 ----------GLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASG 288 (349)
Q Consensus 219 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sg 288 (349)
...........+.+.+|.. +.|+..+.. .|+.+ ..|+. ..+..-..++.=+.+.|..+.+...
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~~IkSg~W~~---d~fiYtT~~-~lkYl--~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~ 250 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISERIKSGCWVE---DCFIYTTSN-HLKYL--VNGET-GIIAHLDKPLYLLGYLPKENRLYLI 250 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S--SEEEEET---TEEEEE-TT-EEEEE--ETTEE-EEEEE-SS--EEEEEETTTTEEEEE
T ss_pred ccccccCchhceEEEEEecceeEEEEEEc---CEEEEEcCC-eEEEE--EcCCc-ceEEEcCCceEEEEEEccCCEEEEE
Confidence 2222222244556666653 245444444 55542 22222 1222224566777788877788888
Q ss_pred cCCCCEEEecCC
Q 018860 289 SEDGTIRIWQTG 300 (349)
Q Consensus 289 s~Dg~v~vW~~~ 300 (349)
..|+.+..+.++
T Consensus 251 Dr~~~v~~~~ld 262 (443)
T PF04053_consen 251 DRDGNVISYELD 262 (443)
T ss_dssp -TT--EEEEE--
T ss_pred ECCCCEEEEEEC
Confidence 899998888664
No 331
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.00 E-value=2.7e-06 Score=77.93 Aligned_cols=198 Identities=15% Similarity=0.194 Sum_probs=122.7
Q ss_pred CeEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCCCC-CceeccCCCCeEEEEEecCCCeEEEEeeC----CCeEEEEEC
Q 018860 103 HIVRACSFSEDT--HLLLTGGMEKILRIFDLNRPDAP-PREVDRSPGSVRTVAWLHSDQTILSTCTD----MGGVRLWDV 175 (349)
Q Consensus 103 ~~v~~~~~s~~~--~~l~s~~~d~~i~lwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~v~vwd~ 175 (349)
..+.++++..+. ..++.|..+|.|-+-.+..+... .....++...+++++|.+-+..+|++|-+ |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345666665443 46788889999999888755433 34456677789999999988888877743 458999999
Q ss_pred CCC--ceEEe--ec--CCCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecC
Q 018860 176 RSG--EIVQT--LE--TKSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGE 248 (349)
Q Consensus 176 ~~~--~~~~~--~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
.++ -+... +. ......++++..+.+++.++ ..+.+.++|++........-....+..+.+.|-..+++++- .
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~-~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN-S 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc-c
Confidence 876 22111 11 22345577777777776554 46799999998432211111111233455566445555544 4
Q ss_pred CCeEEEEeC-CCCcE-EEEecCCC----cceeEEEEccCCC-eEEEecCC-CCEEEecCCC
Q 018860 249 DMWVRFFDF-HTGNE-IACNKGHH----GPVHCVRFSPGGE-SYASGSED-GTIRIWQTGP 301 (349)
Q Consensus 249 d~~i~v~d~-~~~~~-~~~~~~h~----~~i~~l~~sp~~~-~l~sgs~D-g~v~vW~~~~ 301 (349)
|+.|.+||. +.-+. +..+...+ ..+..++|+|... .|++.+.| ++|++++...
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 999999994 32221 21111112 2488999999753 45556554 5799998753
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.0019 Score=59.34 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=98.2
Q ss_pred CCeEEEeecccCCeEEEEECCCCCeeEEee---CC-CeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEE-eCCCe
Q 018860 51 GDWIGTFEGHKGAVWSCCLDTNALRAASAS---AD-FSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTG-GMEKI 125 (349)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---~D-~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~ 125 (349)
+.....+..-...+..-+|+++++.++-.+ .. ..+.++++++++..........-..-+|+|||+.|+-+ ..|+.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 334444443444566678888888765432 22 46899999998876666655556677899999877654 46777
Q ss_pred EEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCC--eEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEE
Q 018860 126 LRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMG--GVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYIT 203 (349)
Q Consensus 126 i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 203 (349)
..+|-++........+....+.-..=.|+|++..++.++...| .|.+.|+..+...........-..-.++|||++++
T Consensus 262 ~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 262 PDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred ccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEE
Confidence 6655443322222222222222224457888888887776656 45666666555432222222222567899998875
Q ss_pred Eec--CCe--EEEEecCCce
Q 018860 204 TAD--GST--VKFWDANHFG 219 (349)
Q Consensus 204 ~~~--d~~--i~iwd~~~~~ 219 (349)
-.. ++. |.+.|+....
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEeccCCceeeEEeccCCCC
Confidence 432 344 5555554443
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0034 Score=60.20 Aligned_cols=203 Identities=16% Similarity=0.246 Sum_probs=121.1
Q ss_pred EEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCe-EEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCCCC-
Q 018860 67 CCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHI-VRACSFSEDTHLLLTGGMEK-----ILRIFDLNRPDAPP- 138 (349)
Q Consensus 67 ~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~-v~~~~~s~~~~~l~s~~~d~-----~i~lwd~~~~~~~~- 138 (349)
-++++.+..++-|+.||.|.+.+- +.+.++.|. ++.. |..+....+.++|++.+.|+ .+++|++...+...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 467788889999999998877663 223335443 3333 44444444457888877654 48999997543211
Q ss_pred -------cee----ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC---CC--CceEEeecCCCCeeEEEEcCCCcE-
Q 018860 139 -------REV----DRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDV---RS--GEIVQTLETKSPVTSAEVSQDGRY- 201 (349)
Q Consensus 139 -------~~~----~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~---~~--~~~~~~~~~~~~v~~~~~~~~~~~- 201 (349)
+.+ ...+.++.+++.+. +-..++.|-.+|.|..+.- |. -+.......+.+|+.+.+..+++.
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 111 11234556666554 4566777888899988742 11 122233345779999999988866
Q ss_pred EEEecCCeEEEEecCCceeeEE-E-cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEec-CCCcce
Q 018860 202 ITTADGSTVKFWDANHFGLVKS-Y-NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNK-GHHGPV 273 (349)
Q Consensus 202 l~~~~d~~i~iwd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~h~~~i 273 (349)
+.++.-..|.+|.+....+... + .......+..+++... .|++|+ ...+.+|+......-..+. ||...+
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~-qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY-QFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc-cEEEec-CceEEEEcCCCcceeeeecCCCeEEE
Confidence 5566667799998875442222 2 2334455566665422 244444 4578899987555444444 565433
No 334
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.97 E-value=2.6e-05 Score=44.43 Aligned_cols=39 Identities=38% Similarity=0.611 Sum_probs=35.1
Q ss_pred CCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEE
Q 018860 51 GDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWD 89 (349)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd 89 (349)
++++..+.+|...|.++.|.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356778889999999999999999999999999999996
No 335
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.95 E-value=2.9e-05 Score=44.19 Aligned_cols=38 Identities=50% Similarity=0.911 Sum_probs=33.1
Q ss_pred cEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 261 NEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 261 ~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
+....+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34455667889999999999999999999999999996
No 336
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.92 E-value=0.00052 Score=66.79 Aligned_cols=138 Identities=13% Similarity=0.180 Sum_probs=93.5
Q ss_pred eEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCC--------cEEEEecCCeEEEEecCCce--eeE----EE
Q 018860 159 TILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDG--------RYITTADGSTVKFWDANHFG--LVK----SY 224 (349)
Q Consensus 159 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~d~~i~iwd~~~~~--~~~----~~ 224 (349)
.+|....+.+.|+-.|+..|+.+.....+..+.-..+.|+. ..+++-++..+-.||.|-.. ++. .+
T Consensus 495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y 574 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY 574 (794)
T ss_pred eEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence 34444456688999999999999988765433233444432 34556567789999998532 221 22
Q ss_pred cCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 225 NMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
.....+.+++-. ...++|.|+.+|.||+||-...+....+.+-..+|..|..+.||++++..+ +..|.|.++
T Consensus 575 ~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 575 SSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccCCCceEEEec--CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 233344555443 467899999999999999533222334567789999999999999987444 566777776
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.90 E-value=0.016 Score=54.80 Aligned_cols=261 Identities=15% Similarity=0.171 Sum_probs=141.8
Q ss_pred EEEEEecCCCeEEEeCCCCCeEEEeecccC------CeE--EEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCe
Q 018860 33 FLISASKDSSPMLRNGETGDWIGTFEGHKG------AVW--SCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHI 104 (349)
Q Consensus 33 ~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~------~v~--~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~ 104 (349)
.+..++.++.+.-.|..+++.+..++.... .+. .+++. ++..++.++.|+.|.-+|.++|+.+-.+.-...
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 566688889999899999987766643322 110 11111 224677788899999999999998766653222
Q ss_pred ------EE-EEEEcCCCCEEEEEe---------CCCeEEEEECCCCCCCCceeccCC-------------------CCe-
Q 018860 105 ------VR-ACSFSEDTHLLLTGG---------MEKILRIFDLNRPDAPPREVDRSP-------------------GSV- 148 (349)
Q Consensus 105 ------v~-~~~~s~~~~~l~s~~---------~d~~i~lwd~~~~~~~~~~~~~~~-------------------~~i- 148 (349)
+. +..+. +.+++.++ .++.+..+|..+.+...+...... ..+
T Consensus 142 ~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 142 VPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred cCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 11 11111 23444443 356777777765543221100000 001
Q ss_pred EEEEEecCCCeEEEEeeC-----------------CCeEEEEECCCCceEEeecCC-CCe------eEEEEc----CCCc
Q 018860 149 RTVAWLHSDQTILSTCTD-----------------MGGVRLWDVRSGEIVQTLETK-SPV------TSAEVS----QDGR 200 (349)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~-----------------dg~v~vwd~~~~~~~~~~~~~-~~v------~~~~~~----~~~~ 200 (349)
.+.++.+.++.+++..++ ++.|.-.|..+|+.+=.+... ... ....+. -++.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 012223334555554432 136888999999876444321 100 000111 1232
Q ss_pred ---EE-EEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEe------------------cCCCeEEEEeCC
Q 018860 201 ---YI-TTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAG------------------GEDMWVRFFDFH 258 (349)
Q Consensus 201 ---~l-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~d~~i~v~d~~ 258 (349)
.+ +++.++.+...|..+++.+-...... ..+...| ..++.+ ..++.+..+|..
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 33 44568899999999988876554321 1112222 223222 246789999999
Q ss_pred CCcEEEEecCC--C------cce--eEEEEccCCCeEEEecCCCCEEEecCCCCC
Q 018860 259 TGNEIACNKGH--H------GPV--HCVRFSPGGESYASGSEDGTIRIWQTGPVT 303 (349)
Q Consensus 259 ~~~~~~~~~~h--~------~~i--~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~ 303 (349)
+|+.+=..... . .+. ..++ ..+..|+.|+.||.|+-+|...+.
T Consensus 375 tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 375 TGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred CCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCc
Confidence 98875322211 0 111 1122 245678889999999999876553
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.89 E-value=0.0086 Score=55.28 Aligned_cols=178 Identities=15% Similarity=0.180 Sum_probs=90.5
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG 93 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~ 93 (349)
...-.+..+.++| +|++++. ..||...|+......... .| .-...+|.+++. +|+-....+|+|+.--+.
T Consensus 30 ~~~~~p~~ls~np---ngr~v~V-~g~geY~iyt~~~~r~k~--~G---~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNP---NGRFVLV-CGDGEYEIYTALAWRNKA--FG---SGLSFVWSSRNR-YAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-T---TSSEEEE-EETTEEEEEETTTTEEEE--EE---E-SEEEE-TSSE-EEEE-TTS-EEEEETTEE
T ss_pred CCCcCCeeEEECC---CCCEEEE-EcCCEEEEEEccCCcccc--cC---ceeEEEEecCcc-EEEEECCCeEEEEEcCcc
Confidence 3444578899997 8888887 567888888744333322 22 234467877554 677777889999754333
Q ss_pred CEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE
Q 018860 94 DVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW 173 (349)
Q Consensus 94 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vw 173 (349)
+....+..+..+..+-. |.+|...+.+ .|.+||+.+.+. .+.+. -.+|..+.|++.+..+...+. ..+.++
T Consensus 100 ~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~-i~~i~--v~~vk~V~Ws~~g~~val~t~--~~i~il 170 (443)
T PF04053_consen 100 EVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKL-IRRID--VSAVKYVIWSDDGELVALVTK--DSIYIL 170 (443)
T ss_dssp -TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E-EEEES--S-E-EEEEE-TTSSEEEEE-S---SEEEE
T ss_pred ccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcce-eeEEe--cCCCcEEEEECCCCEEEEEeC--CeEEEE
Confidence 33334444434444433 7777777655 899999976432 22222 123789999987666655543 467776
Q ss_pred ECCCC-----------ceEEee-cCCCCeeEEEEcCCCcEEEEecCCeEEE
Q 018860 174 DVRSG-----------EIVQTL-ETKSPVTSAEVSQDGRYITTADGSTVKF 212 (349)
Q Consensus 174 d~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~~i~i 212 (349)
+.... ..+..+ +....|.+..|..+ .++.+..+ .++.
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY 219 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY 219 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE
Confidence 64332 012222 22456777777766 44444444 6665
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.85 E-value=0.0053 Score=56.62 Aligned_cols=88 Identities=15% Similarity=0.239 Sum_probs=65.5
Q ss_pred EEEECCCCce----EEeecCCCCeeEEEEcCCCc-EEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEE
Q 018860 171 RLWDVRSGEI----VQTLETKSPVTSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVA 245 (349)
Q Consensus 171 ~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
.+|+....+. +..++.++.+.+.+++|+.. ++.++.||+|.+||....... .......+..++|+|. +..|++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~-gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPD-GAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCC-CcEEEE
Confidence 4566654433 23456677899999999875 456788999999998765332 2244556778899995 889999
Q ss_pred ecCCCeEEEEeCCCC
Q 018860 246 GGEDMWVRFFDFHTG 260 (349)
Q Consensus 246 ~~~d~~i~v~d~~~~ 260 (349)
|+.-|.+.+||+.-.
T Consensus 317 ~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 317 GSEQGELQCFDMALS 331 (545)
T ss_pred EcCCceEEEEEeecC
Confidence 999999999998643
No 340
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.83 E-value=0.0034 Score=45.33 Aligned_cols=103 Identities=22% Similarity=0.208 Sum_probs=68.5
Q ss_pred eeeEEEeecCCCc-cEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEE
Q 018860 19 VVDLFYSPITPDG-FFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLH 97 (349)
Q Consensus 19 v~~~~fs~~~~~~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~ 97 (349)
|+++++...+.|| ..|+.||.|..||+|+.+ +.+.++.-+. .|.+++-... .+++-+-..|+|-+++-. ..+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~-~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD-KVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc-ceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 6778887776654 478899999999999854 6677776544 4556655444 468888899999888752 2233
Q ss_pred EeccCCeEEEEEEcC-C--C-CEEEEEeCCCeEE
Q 018860 98 SFEHKHIVRACSFSE-D--T-HLLLTGGMEKILR 127 (349)
Q Consensus 98 ~~~~~~~v~~~~~s~-~--~-~~l~s~~~d~~i~ 127 (349)
..+.++.+.++++.. + | ..|++|-.+|.|-
T Consensus 76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333344455555433 2 2 2678888888763
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.80 E-value=0.013 Score=57.37 Aligned_cols=133 Identities=15% Similarity=0.150 Sum_probs=93.0
Q ss_pred cCCCeEEEeCCCCCeEEEeecccCC-eEEEEECC-----CCCeeEEeeCCCeEEEEECCCC--CEEE----EeccCCeEE
Q 018860 39 KDSSPMLRNGETGDWIGTFEGHKGA-VWSCCLDT-----NALRAASASADFSAKVWDALTG--DVLH----SFEHKHIVR 106 (349)
Q Consensus 39 ~d~~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~-----~~~~l~s~s~D~~i~vWd~~~~--~~~~----~~~~~~~v~ 106 (349)
....+.--|++.|+.+..++.|... |..++=+. +....+.|=.+..+..||.+-. +++. .+......+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 3455666788999999999988754 54443211 1234566777888999997643 2332 223445677
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEEC
Q 018860 107 ACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDV 175 (349)
Q Consensus 107 ~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~ 175 (349)
|++-+.+| +||.|+.+|.|||||- .+......+.+...+|..+..+.++..+|+||. ..+.+++.
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 88888887 5888999999999994 333333445566789999999988888898885 47888875
No 342
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.79 E-value=7.4e-06 Score=75.21 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=107.6
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEe----cCCCeEEEeCCCC--CeE--EEeec-ccCCeEEEEECCCCCeeEEeeCC
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISAS----KDSSPMLRNGETG--DWI--GTFEG-HKGAVWSCCLDTNALRAASASAD 82 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s----~d~~i~iw~~~~~--~~~--~~~~~-h~~~v~~~~~~~~~~~l~s~s~D 82 (349)
..+|+.+-++++|++. |..+||.|- .|..+.|||..++ .+. ..|.+ --..+.++||..+.+.+.+|...
T Consensus 98 tp~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s 175 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS 175 (783)
T ss_pred cccccccccccccccc--cHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence 3578888899999986 555777662 3346899998765 111 11111 22345578898888899999999
Q ss_pred CeEEEEECCCCCEEEEeccCCeEEEEEEcC-CCCEEEEEeCCCeEEEEE-CCCCCCCCcee----ccCCCCeEEEEEecC
Q 018860 83 FSAKVWDALTGDVLHSFEHKHIVRACSFSE-DTHLLLTGGMEKILRIFD-LNRPDAPPREV----DRSPGSVRTVAWLHS 156 (349)
Q Consensus 83 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~lwd-~~~~~~~~~~~----~~~~~~i~~~~~~~~ 156 (349)
+.+.++|+.........-....++.+...| .++++++-. |+.|-+|| ..+-+.+.... ...+..+.+++|.|.
T Consensus 176 r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 176 RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence 999999986432211111334567777888 677877655 99999999 33222222222 222345889999997
Q ss_pred CCeEEEEeeC-CCeEEEEECCC
Q 018860 157 DQTILSTCTD-MGGVRLWDVRS 177 (349)
Q Consensus 157 ~~~~l~~~~~-dg~v~vwd~~~ 177 (349)
..-+++++.. .++|+++|+..
T Consensus 255 rtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 255 RTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CcchhhhhccCcceEEEecccc
Confidence 7666666654 47899999863
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.77 E-value=0.016 Score=48.17 Aligned_cols=92 Identities=16% Similarity=-0.025 Sum_probs=64.0
Q ss_pred eccCCCceeeEEEee-----------------cCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCC
Q 018860 12 CHGHSRPVVDLFYSP-----------------ITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNAL 74 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~-----------------~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 74 (349)
..-|.+.+.+|.+-. .- -|.+++.|...|.+.+.+..+|+....+..-...=.....++++.
T Consensus 28 igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~g 106 (354)
T KOG4649|consen 28 IGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGG 106 (354)
T ss_pred EecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCc
Confidence 355888777775421 11 255788899999988888888876655543211111224577888
Q ss_pred eeEEeeCCCeEEEEECCCCCEEEEeccCCe
Q 018860 75 RAASASADFSAKVWDALTGDVLHSFEHKHI 104 (349)
Q Consensus 75 ~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~ 104 (349)
.+..++.|++...-|..+..++...+-.+.
T Consensus 107 lIycgshd~~~yalD~~~~~cVykskcgG~ 136 (354)
T KOG4649|consen 107 LIYCGSHDGNFYALDPKTYGCVYKSKCGGG 136 (354)
T ss_pred eEEEecCCCcEEEecccccceEEecccCCc
Confidence 999999999999999999888887664443
No 344
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00068 Score=61.49 Aligned_cols=142 Identities=14% Similarity=0.164 Sum_probs=100.0
Q ss_pred CCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcE--------EEEecCCeEEEEecCCcee-------
Q 018860 156 SDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRY--------ITTADGSTVKFWDANHFGL------- 220 (349)
Q Consensus 156 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--------l~~~~d~~i~iwd~~~~~~------- 220 (349)
....++.++.....++-.|++.|+.+.....+..++-+.+.|+.++ +++-++..|--||.|-...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 4455666777778899999999999999888777888888887643 3444567788899874322
Q ss_pred eEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 221 VKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
-+.+.....+.+.+- +.+.++++|+.+|.||+||--.......+.+-..+|..+..+.+|++|+ |..+..|.|-++.
T Consensus 424 ~kqy~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeee--cCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEE-EecccEEEEEEEe
Confidence 111222223333333 3467899999999999999733333445778889999999999999886 4446667776654
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.74 E-value=0.02 Score=48.45 Aligned_cols=195 Identities=12% Similarity=0.086 Sum_probs=114.0
Q ss_pred eeeccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecc-cCCeEEEEECCCCCeeEEeeCCCeEEEE
Q 018860 10 LVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLDTNALRAASASADFSAKVW 88 (349)
Q Consensus 10 ~~~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~D~~i~vW 88 (349)
+.+.|=.+.++.+.|+| .++++.+.....+.|...+. +|+.++.+.-. .+....+++..++.++++--.++.+.+.
T Consensus 15 ~~l~g~~~e~SGLTy~p--d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNP--DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEET--TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcC--CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 34556666799999997 23445555555566666665 57888877643 3567888998888888877779999999
Q ss_pred ECCCC--C--E--EEEec------cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CCCCCce--------eccCCC
Q 018860 89 DALTG--D--V--LHSFE------HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNR--PDAPPRE--------VDRSPG 146 (349)
Q Consensus 89 d~~~~--~--~--~~~~~------~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~--~~~~~~~--------~~~~~~ 146 (349)
++... . . ...+. ++..+..++|.+.++.|+.+-...-.++|.+.. ....... ......
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 87332 1 1 11121 334689999999888888777666677777653 1111100 111234
Q ss_pred CeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC----------CCeeEEEEcCCCcEEEEecCC
Q 018860 147 SVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK----------SPVTSAEVSQDGRYITTADGS 208 (349)
Q Consensus 147 ~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~d~ 208 (349)
.+.++.+.|..+.+++-+.....|..+| .+|+.+..+.-. .....+++.++|.+..++.-+
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 5788999999888888888888999999 677776655321 135678889999887777644
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.73 E-value=0.025 Score=49.05 Aligned_cols=221 Identities=12% Similarity=0.054 Sum_probs=120.8
Q ss_pred CCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCce---------
Q 018860 70 DTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPRE--------- 140 (349)
Q Consensus 70 ~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~--------- 140 (349)
...++.|+.|..+| +.+++...........+...|..+...|+-+.+++-+ |+.+.++++..-......
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 34567889898888 8899883333333333444599999988877766654 599999998643322210
Q ss_pred ----eccCCCCeEEEE--EecCCCeEEEEeeCCCeEEEEECCCC-----ceEEeecCCCCeeEEEEcCCCcEEEEecCCe
Q 018860 141 ----VDRSPGSVRTVA--WLHSDQTILSTCTDMGGVRLWDVRSG-----EIVQTLETKSPVTSAEVSQDGRYITTADGST 209 (349)
Q Consensus 141 ----~~~~~~~i~~~~--~~~~~~~~l~~~~~dg~v~vwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~ 209 (349)
.......+...+ -.+.+...++.+.. +.|.+|..... +..+.+.....+..+.|.+ ..+..+..+.
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~--~~i~v~~~~~ 158 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG--NKICVGTSKG 158 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--CEEEEEeCCc
Confidence 011112233322 11233344444444 68888776542 4566677777888888883 3444444556
Q ss_pred EEEEecCCceeeEEEcCCC------------ceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEE-EecCCCcceeEE
Q 018860 210 VKFWDANHFGLVKSYNMPC------------TIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIA-CNKGHHGPVHCV 276 (349)
Q Consensus 210 i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~h~~~i~~l 276 (349)
..+.|+.+......+.... ....+...+ ++.+++ +.++ .-...|. .|+... ..-.......++
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll-~~~~-~g~fv~~-~G~~~r~~~i~W~~~p~~~ 234 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLL-CYDN-IGVFVNK-NGEPSRKSTIQWSSAPQSV 234 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEE-Eecc-eEEEEcC-CCCcCcccEEEcCCchhEE
Confidence 7888888665544332211 111111111 233333 3322 2223333 343322 111133456667
Q ss_pred EEccCCCeEEEecCCCCEEEecCCCC
Q 018860 277 RFSPGGESYASGSEDGTIRIWQTGPV 302 (349)
Q Consensus 277 ~~sp~~~~l~sgs~Dg~v~vW~~~~~ 302 (349)
++. .++|+..+. +.|.||++...
T Consensus 235 ~~~--~pyli~~~~-~~iEV~~~~~~ 257 (275)
T PF00780_consen 235 AYS--SPYLIAFSS-NSIEVRSLETG 257 (275)
T ss_pred EEE--CCEEEEECC-CEEEEEECcCC
Confidence 663 467776665 44999998665
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.73 E-value=0.01 Score=50.24 Aligned_cols=197 Identities=11% Similarity=0.152 Sum_probs=107.9
Q ss_pred ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC--CCCeeEEEEcCCCcEEEEec-CCeEEEEecCCc
Q 018860 142 DRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET--KSPVTSAEVSQDGRYITTAD-GSTVKFWDANHF 218 (349)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~ 218 (349)
.+....+..++|.|..+.+++.....+.|...++ +|+.+..+.. ......+.+..++.++.+.. ++.+.++++...
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 3444568999999998999988888889988886 5788777653 35678899998898888775 788888887321
Q ss_pred ------eeeEEEc------CCCceEEeeecCCCCCEEEEecCCCeEEEEeCCC---CcEEEE--------ecCCCcceeE
Q 018860 219 ------GLVKSYN------MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHT---GNEIAC--------NKGHHGPVHC 275 (349)
Q Consensus 219 ------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~--------~~~h~~~i~~ 275 (349)
...+.+. .+..+..+++.+..++ |+.+-...-.++|.+.. ...+.. ...+...+.+
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 1112222 1234789999987444 44454444444554432 222111 1123456889
Q ss_pred EEEccCC-CeEEEecCCCCEEEecCCCCCCCcceeeeccCeeeeeEeChhhhhccccceeecccccchhhhhh
Q 018860 276 VRFSPGG-ESYASGSEDGTIRIWQTGPVTNDDTETLTANGTIGKVKVTADEVSRKIEGFHIADEGKMKEKEEA 347 (349)
Q Consensus 276 l~~sp~~-~~l~sgs~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (349)
++++|.. .+++.......|...|.... ....-.|.. |.- -..+..++.+|+.+.++|.||.=-||
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d~~G~-~~~~~~L~~-g~~-----gl~~~~~QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELDRQGR-VVSSLSLDR-GFH-----GLSKDIPQPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-ST-TGG-----G-SS---SEEEEEE-TT--EEEEETT
T ss_pred eEEcCCCCeEEEEECCCCeEEEECCCCC-EEEEEEeCC-ccc-----CcccccCCccEEEECCCCCEEEEcCC
Confidence 9999874 55667778888888874321 111111111 000 01133455699999999999876554
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.72 E-value=0.0035 Score=45.30 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=65.4
Q ss_pred eEEEEEC---CCC-CeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc
Q 018860 64 VWSCCLD---TNA-LRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR 139 (349)
Q Consensus 64 v~~~~~~---~~~-~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~ 139 (349)
|.++++. .+| ..|+.||.|..||+|+- .+.+..+.-.+.|.++.-... ..++-+-.+|+|.+|+-.. ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee
Confidence 5566653 332 47999999999999985 467777877788888877666 5678888899999887532 1112
Q ss_pred eeccCCCCeEEEEEecCC---CeEEEEeeCCCeEE
Q 018860 140 EVDRSPGSVRTVAWLHSD---QTILSTCTDMGGVR 171 (349)
Q Consensus 140 ~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~v~ 171 (349)
.- .+..+.++.+..-+ -.-|.+|-.+|.|.
T Consensus 77 iK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 11 23346666655322 22345666667664
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.71 E-value=0.03 Score=49.78 Aligned_cols=208 Identities=20% Similarity=0.188 Sum_probs=109.1
Q ss_pred CeEEEeCCCCCeEEEeeccc-CCeEEEE---ECCC----CCeeEEeeC----------CCeEEEEECCCC-----C--EE
Q 018860 42 SPMLRNGETGDWIGTFEGHK-GAVWSCC---LDTN----ALRAASASA----------DFSAKVWDALTG-----D--VL 96 (349)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~-~~v~~~~---~~~~----~~~l~s~s~----------D~~i~vWd~~~~-----~--~~ 96 (349)
.+++.|..+.+.+.+++-.. ..+.+++ +..+ ..+|+.|.. .|.|.++++.+. + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 47788877777766665432 2234333 4432 456665532 288999999884 2 23
Q ss_pred EEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-CCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEE--
Q 018860 97 HSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPD-APPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLW-- 173 (349)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vw-- 173 (349)
+....+++|++++-- .+. |+.+. .+.+.+|++...+ .........+..+.++... ++. ++.|...+.+.++
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~-I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNY-ILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTE-EEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccE-EEEEEcccCEEEEEE
Confidence 444567889888765 444 44333 4789999997665 2222223334467777654 334 4445545666655
Q ss_pred ECCCCceEEee--cCCCCeeEEEEcCCCcEEEEe-cCCeEEEEecCC-----------ceeeEEEcCCCceEEe---eec
Q 018860 174 DVRSGEIVQTL--ETKSPVTSAEVSQDGRYITTA-DGSTVKFWDANH-----------FGLVKSYNMPCTIESA---SLE 236 (349)
Q Consensus 174 d~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~-----------~~~~~~~~~~~~~~~~---~~~ 236 (349)
+....+....- .....+.++.+.+++..+.++ .++.+.++.... ......+.....+..+ .+.
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 54322222111 123357777777555455554 479998887652 1223344555555544 333
Q ss_pred CC--CC-----CEEEEecCCCeEEEE
Q 018860 237 PK--YG-----NKFVAGGEDMWVRFF 255 (349)
Q Consensus 237 ~~--~~-----~~~~~~~~d~~i~v~ 255 (349)
|. .. ..++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 31 11 136667777777643
No 350
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.62 E-value=0.013 Score=56.15 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=117.3
Q ss_pred CccEEEEEecCC------CeEEEeCCCCCeEEEeecccCC-eEEEEECCCCCeeEEeeCC------CeEEEEECCCCCEE
Q 018860 30 DGFFLISASKDS------SPMLRNGETGDWIGTFEGHKGA-VWSCCLDTNALRAASASAD------FSAKVWDALTGDVL 96 (349)
Q Consensus 30 ~~~~l~s~s~d~------~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~D------~~i~vWd~~~~~~~ 96 (349)
.+..++.|+.++ .+..+|..++.+.....-.... -.++++. ++...++||.| .++..+|..+.+ -
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-W 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-e
Confidence 356777787774 4677888877665433322222 2233333 45678889988 356677776654 2
Q ss_pred EEec------cCCeEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEee
Q 018860 97 HSFE------HKHIVRACSFSEDTHLLLTGGMEKI-----LRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCT 165 (349)
Q Consensus 97 ~~~~------~~~~v~~~~~s~~~~~l~s~~~d~~-----i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 165 (349)
..+. +...+..+ +|.+-+.||.|+. +..||..+.+.... ..........+...-++.+.+.|+
T Consensus 362 ~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v--a~m~~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV--APMLTRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred eccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCccccc--CCCCcceeeeEEEEECCEEEEEcC
Confidence 2121 11112222 6777888988855 66777765443221 111112222222233566666665
Q ss_pred CC------CeEEEEECCCCceEEeecCCC--CeeEEEEcCCCcEEEEecCC-----eEEEEecCCceeeEEEcCCCceEE
Q 018860 166 DM------GGVRLWDVRSGEIVQTLETKS--PVTSAEVSQDGRYITTADGS-----TVKFWDANHFGLVKSYNMPCTIES 232 (349)
Q Consensus 166 ~d------g~v~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~ 232 (349)
.+ .++..||+.++++...-+... ....++...+..+++++.++ +|..||..+.+-...-.+......
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 33 368899999988754433221 12223333333344455443 478898876654433323222222
Q ss_pred eeecCCCCCEEEEecCCC-----eEEEEeCCCC
Q 018860 233 ASLEPKYGNKFVAGGEDM-----WVRFFDFHTG 260 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~d~-----~i~v~d~~~~ 260 (349)
.......+..++.|+.|+ +|..||..+.
T Consensus 516 ~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 516 VGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 222223467788888775 3555554443
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.62 E-value=0.04 Score=48.31 Aligned_cols=236 Identities=13% Similarity=0.056 Sum_probs=134.1
Q ss_pred CCccEEEEEe----------cCCCeEEEeCCCCCeEEEeecc---cCCe----EEEEECCCCCeeEEee--CCCeEEEEE
Q 018860 29 PDGFFLISAS----------KDSSPMLRNGETGDWIGTFEGH---KGAV----WSCCLDTNALRAASAS--ADFSAKVWD 89 (349)
Q Consensus 29 ~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~h---~~~v----~~~~~~~~~~~l~s~s--~D~~i~vWd 89 (349)
|+++.+.+++ +.-.+.+||.++-.....+.-. ...+ ...+++.|++++.... --.+|-|-|
T Consensus 45 pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVD 124 (342)
T PF06433_consen 45 PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVD 124 (342)
T ss_dssp TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEE
T ss_pred CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEE
Confidence 4788777652 2234789999988777766432 2221 2346777888776644 345678888
Q ss_pred CCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc----eeccCCCCeE-EEEEecCCCeEEEEe
Q 018860 90 ALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR----EVDRSPGSVR-TVAWLHSDQTILSTC 164 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~----~~~~~~~~i~-~~~~~~~~~~~l~~~ 164 (349)
+..++.+..+.-++-....-.. ..-+.+-+.||.+....++....... .+..-..++. .-.+...++.++...
T Consensus 125 l~~~kvv~ei~~PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S 202 (342)
T PF06433_consen 125 LAAKKVVGEIDTPGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS 202 (342)
T ss_dssp TTTTEEEEEEEGTSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB
T ss_pred CCCCceeeeecCCCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEe
Confidence 8888777777655432222222 24577778899888888874433211 1111111111 112233334444333
Q ss_pred eCCCeEEEEECCCCce--EEeecC-----------CCCeeEEEEcCCC-cEEEEec---CC-------eEEEEecCCcee
Q 018860 165 TDMGGVRLWDVRSGEI--VQTLET-----------KSPVTSAEVSQDG-RYITTAD---GS-------TVKFWDANHFGL 220 (349)
Q Consensus 165 ~~dg~v~vwd~~~~~~--~~~~~~-----------~~~v~~~~~~~~~-~~l~~~~---d~-------~i~iwd~~~~~~ 220 (349)
- +|.|+--|+..... ...+.. ......+++++.. ++.+... .+ .|-++|+.+.+.
T Consensus 203 y-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr 281 (342)
T PF06433_consen 203 Y-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR 281 (342)
T ss_dssp T-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE
T ss_pred c-CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE
Confidence 3 37777777655432 122211 1233456777544 3333221 12 488889999999
Q ss_pred eEEEcCCCceEEeeecCCCCCEEEE-ecCCCeEEEEeCCCCcEEEEec
Q 018860 221 VKSYNMPCTIESASLEPKYGNKFVA-GGEDMWVRFFDFHTGNEIACNK 267 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~ 267 (349)
+..+.....+.++.++..+.-+|++ ...++.+.+||..+|+.+..+.
T Consensus 282 v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 282 VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 8888876666677887765556655 4578999999999999988765
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.59 E-value=0.02 Score=50.95 Aligned_cols=207 Identities=18% Similarity=0.295 Sum_probs=114.6
Q ss_pred CeEEEEECCCCCEEEEec--cCCeEEE---EEEcCC----CCEEEEEeC----------CCeEEEEECCCCC---CCCc-
Q 018860 83 FSAKVWDALTGDVLHSFE--HKHIVRA---CSFSED----THLLLTGGM----------EKILRIFDLNRPD---APPR- 139 (349)
Q Consensus 83 ~~i~vWd~~~~~~~~~~~--~~~~v~~---~~~s~~----~~~l~s~~~----------d~~i~lwd~~~~~---~~~~- 139 (349)
..|++.|..+.+.+..+. ....+.+ +.|..+ ..+|+.|.. .|.|.++++.... ...+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368899988888776664 3334444 444432 467777643 2889999987631 1111
Q ss_pred -eeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eEEeec--CCCCeeEEEEcCCCcEEEEec-CCeEEEE-
Q 018860 140 -EVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGE-IVQTLE--TKSPVTSAEVSQDGRYITTAD-GSTVKFW- 213 (349)
Q Consensus 140 -~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~-d~~i~iw- 213 (349)
.....+++|.++.-. ++.++++.+ +.|.+|++...+ ....-. ....+.++... +.++..++ -..+.++
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~g--~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAVG--NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEET--TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEeec--CEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 123446789998765 455555543 689999998777 544333 33355555555 44666654 4556555
Q ss_pred -ecCCcee--eEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCC-------Cc-EEE-EecCC-CcceeEE---E
Q 018860 214 -DANHFGL--VKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHT-------GN-EIA-CNKGH-HGPVHCV---R 277 (349)
Q Consensus 214 -d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~-~~~-~~~~h-~~~i~~l---~ 277 (349)
+....+. +..-..+..+.++.+.++. +.++++..+|.+.++.... +. .+. ...-| ...|+++ +
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 5433322 2222233445666666443 5899999999999998753 22 221 11222 3456666 4
Q ss_pred Ecc--CCC------eEEEecCCCCEEE
Q 018860 278 FSP--GGE------SYASGSEDGTIRI 296 (349)
Q Consensus 278 ~sp--~~~------~l~sgs~Dg~v~v 296 (349)
+.| .+. .++-++.+|.|-.
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 445 222 3667778888774
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.00037 Score=66.42 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=78.3
Q ss_pred EEECCCCCeeEEee----CCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceec
Q 018860 67 CCLDTNALRAASAS----ADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVD 142 (349)
Q Consensus 67 ~~~~~~~~~l~s~s----~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~ 142 (349)
..|+|...+++.++ ..|+|.|+ +.+|++.+....+--+.+++|+|..-.|++|-.-|.+.+|..+..+. .....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~~ 98 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVVE 98 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee-eeecc
Confidence 35666666665554 36778888 46677655555455567899999999999999999999998764332 23346
Q ss_pred cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 018860 143 RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR 176 (349)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~ 176 (349)
.|+.+|.-+.|+|+++.+ .++..-|.|.+|...
T Consensus 99 th~a~i~~l~wS~~G~~l-~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVL-MTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCCceeEEecCCCCeE-EEcCCCceeEEEEee
Confidence 789999999999876654 577777999999764
No 354
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.00031 Score=56.98 Aligned_cols=137 Identities=14% Similarity=0.103 Sum_probs=84.9
Q ss_pred eCCCeEEEEECCCCceEEeec-CCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeE--EEcCCCceEEeeecCCCCC
Q 018860 165 TDMGGVRLWDVRSGEIVQTLE-TKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVK--SYNMPCTIESASLEPKYGN 241 (349)
Q Consensus 165 ~~dg~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 241 (349)
+.+|.|+-++++..+.-..-+ ...... ..+--+..++.++.++.|.+|..+.+.... .......+........++.
T Consensus 37 sa~~~v~~~~~~k~k~s~rse~~~~e~~-~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~ 115 (238)
T KOG2444|consen 37 SADGLVRERKVRKHKESCRSERFIDEGQ-RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSS 115 (238)
T ss_pred cCCcccccchhhhhhhhhhhhhhhhcce-eecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccc
Confidence 345888888877543221111 011111 111223355666779999999887322110 0000111111111222345
Q ss_pred EEEEecCCCeEEEEeCCCCcEEEEecCCC-cceeEEEEccCCCeEEEe--cCCCCEEEecCCCC
Q 018860 242 KFVAGGEDMWVRFFDFHTGNEIACNKGHH-GPVHCVRFSPGGESYASG--SEDGTIRIWQTGPV 302 (349)
Q Consensus 242 ~~~~~~~d~~i~v~d~~~~~~~~~~~~h~-~~i~~l~~sp~~~~l~sg--s~Dg~v~vW~~~~~ 302 (349)
+..+++.|+.||.|+....+.+.....|+ .++..+..+-.+.++++. |.|..++.|++...
T Consensus 116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 78889999999999999888887777787 677788888888888888 99999999998754
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.0082 Score=55.17 Aligned_cols=157 Identities=19% Similarity=0.208 Sum_probs=88.0
Q ss_pred CeEEEeCCCCC--eEEEeecccCCeEEEEECCCCCeeE-EeeCCCeEEEE--ECCCCCEEEEeccCCe-EEEEEEcCCCC
Q 018860 42 SPMLRNGETGD--WIGTFEGHKGAVWSCCLDTNALRAA-SASADFSAKVW--DALTGDVLHSFEHKHI-VRACSFSEDTH 115 (349)
Q Consensus 42 ~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~D~~i~vW--d~~~~~~~~~~~~~~~-v~~~~~s~~~~ 115 (349)
.+.+++..+++ .+.++.++... -+|+|||++|+ +...|+...|| |+.++... .+.+... -..=.|+|||+
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~---P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGA---PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGS 294 (425)
T ss_pred eEEEEeccCCccceeeccCCccCC---ccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCC
Confidence 46677777664 45566666543 58999998766 55667776665 66655533 3443332 23566899999
Q ss_pred EEEEEe-CCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCe--EEEEECCCCceEEeecCCCCeeE
Q 018860 116 LLLTGG-MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGG--VRLWDVRSGEIVQTLETKSPVTS 192 (349)
Q Consensus 116 ~l~s~~-~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~--v~vwd~~~~~~~~~~~~~~~v~~ 192 (349)
.|+-.+ ..|.=++|-++........+......-..-.|+|++..++.....+|. |.+.|+.++.-...+........
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ 374 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNES 374 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCC
Confidence 887554 455545555433222222222222222245677777777666644455 66677766553444433333334
Q ss_pred EEEcCCCcEE
Q 018860 193 AEVSQDGRYI 202 (349)
Q Consensus 193 ~~~~~~~~~l 202 (349)
-.+.++++.+
T Consensus 375 ps~~~ng~~i 384 (425)
T COG0823 375 PSWAPNGRMI 384 (425)
T ss_pred CCcCCCCceE
Confidence 4566666654
No 356
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.43 E-value=0.1 Score=48.27 Aligned_cols=217 Identities=15% Similarity=0.126 Sum_probs=108.3
Q ss_pred EEEEECCCCCeeEE-eeCC----CeEEEEECCCCCEEEE-eccCCeEEEEEEcCCCCEEEEEeCCC-----------eEE
Q 018860 65 WSCCLDTNALRAAS-ASAD----FSAKVWDALTGDVLHS-FEHKHIVRACSFSEDTHLLLTGGMEK-----------ILR 127 (349)
Q Consensus 65 ~~~~~~~~~~~l~s-~s~D----~~i~vWd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~-----------~i~ 127 (349)
...+++|+++++|- -+.. ..+++.|+.+|+.+.. +.... ...+.|.++++.|+-...+. .|.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 35688999998773 2333 4599999999976543 22221 12399999988776554332 367
Q ss_pred EEECCCCCCCC-ceeccCCC-C-eEEEEEecCCCeEEEEeeCC---CeEEEEECCCC-----ceEEeecCCCCeeEEEEc
Q 018860 128 IFDLNRPDAPP-REVDRSPG-S-VRTVAWLHSDQTILSTCTDM---GGVRLWDVRSG-----EIVQTLETKSPVTSAEVS 196 (349)
Q Consensus 128 lwd~~~~~~~~-~~~~~~~~-~-i~~~~~~~~~~~~l~~~~~d---g~v~vwd~~~~-----~~~~~~~~~~~v~~~~~~ 196 (349)
.|.+.++...- ..+..... . ...+..++++..+++..... ..+.+-|+..+ ...........+....-+
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 77876544321 22222222 2 55677777777766655443 35788888764 333333333333222222
Q ss_pred CCCcEEEEec----CCeEEEEecCCcee---e-EEEcCCC--ceEEeeecCCCCCEEEEecCCC--eEEEEeCCCCcEEE
Q 018860 197 QDGRYITTAD----GSTVKFWDANHFGL---V-KSYNMPC--TIESASLEPKYGNKFVAGGEDM--WVRFFDFHTGNEIA 264 (349)
Q Consensus 197 ~~~~~l~~~~----d~~i~iwd~~~~~~---~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~--~i~v~d~~~~~~~~ 264 (349)
..+.++..+. ++.|.-.++..... . ..+.... .+..+... .+..++..-.++ .|+++++..+....
T Consensus 286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 286 HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 2444443332 35666667765542 1 2222222 23333332 233444444443 68888888333333
Q ss_pred Ee-cCCCcceeEEEEccCCCe
Q 018860 265 CN-KGHHGPVHCVRFSPGGES 284 (349)
Q Consensus 265 ~~-~~h~~~i~~l~~sp~~~~ 284 (349)
.+ ..-.+.|..+...++++.
T Consensus 364 ~~~~p~~g~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDSDE 384 (414)
T ss_dssp EEESSSSSEEEEEES-TT-SE
T ss_pred eecCCcceEEeccCCCCCCCE
Confidence 22 222344555554455443
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.097 Score=47.76 Aligned_cols=253 Identities=15% Similarity=0.150 Sum_probs=150.2
Q ss_pred eEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEE--eeCCCeEEEEECCCCCEEEEeccC-CeEEEEEEcCCCCEEEE
Q 018860 43 PMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAAS--ASADFSAKVWDALTGDVLHSFEHK-HIVRACSFSEDTHLLLT 119 (349)
Q Consensus 43 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--~s~D~~i~vWd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s 119 (349)
+.+++..+......+.-+. ....+...+++..+.. ...+ .+..-+...........-. ..-..+++++.+..+..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCc-eeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 4455544444444444333 2344566666643332 2233 4444444311111111111 22356788888885554
Q ss_pred E-eCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEee--CCCeEEEEECCCCceEEeecCC-CCeeEEEE
Q 018860 120 G-GMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCT--DMGGVRLWDVRSGEIVQTLETK-SPVTSAEV 195 (349)
Q Consensus 120 ~-~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~v~vwd~~~~~~~~~~~~~-~~v~~~~~ 195 (349)
. ..+..|.+.|............+. ....+++.+.++.+.++-. .++++-+.|..+++........ .+ ..+++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~ 167 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAV 167 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEE
Confidence 4 456889999965443322222221 4566778888877766655 3689999999999888876544 35 78999
Q ss_pred cCCCcEEEEe--cCCeEEEEecCCceeeE-----EEcCCCceEEeeecCCCCCEEEEecCC--CeEEEEeCCCCcEEEE-
Q 018860 196 SQDGRYITTA--DGSTVKFWDANHFGLVK-----SYNMPCTIESASLEPKYGNKFVAGGED--MWVRFFDFHTGNEIAC- 265 (349)
Q Consensus 196 ~~~~~~l~~~--~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~i~v~d~~~~~~~~~- 265 (349)
.|++..+... .++.|.+.|.......+ ..........+.+.+.....+++...+ +.+...|..++.....
T Consensus 168 ~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~ 247 (381)
T COG3391 168 DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD 247 (381)
T ss_pred CCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence 9999865443 47999999987766553 122223345667777533344443333 6999999988777654
Q ss_pred ecCCCcceeEEEEccCCCeEEEe-cCCCCEEEecCC
Q 018860 266 NKGHHGPVHCVRFSPGGESYASG-SEDGTIRIWQTG 300 (349)
Q Consensus 266 ~~~h~~~i~~l~~sp~~~~l~sg-s~Dg~v~vW~~~ 300 (349)
...-......++++|+|..+... +..+.+.+-|..
T Consensus 248 ~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 248 LPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred cccccCCCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 22111145678999999988766 444677776653
No 358
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.38 E-value=0.093 Score=46.94 Aligned_cols=270 Identities=19% Similarity=0.225 Sum_probs=120.0
Q ss_pred CCCcc-EEEEEecCCCeEEE--eCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccC-C
Q 018860 28 TPDGF-FLISASKDSSPMLR--NGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHK-H 103 (349)
Q Consensus 28 ~~~~~-~l~s~s~d~~i~iw--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~ 103 (349)
.+||+ +|..+..|+.-++| |+++++..+-.++-........++++.+.++=......++--|+.+.+....+..+ .
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~ 123 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDD 123 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TT
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcc
Confidence 34674 55666668876666 67777655444432222334456677777655555568888899988766555533 3
Q ss_pred eEEEEEE--cCCCCEEEEEeC---C-----------------CeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEE
Q 018860 104 IVRACSF--SEDTHLLLTGGM---E-----------------KILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTIL 161 (349)
Q Consensus 104 ~v~~~~~--s~~~~~l~s~~~---d-----------------~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 161 (349)
.+-...| ..++..++-.-. | ...+++.++......+.+......+.-+.|+|.++.++
T Consensus 124 ~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li 203 (386)
T PF14583_consen 124 WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLI 203 (386)
T ss_dssp EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEE
T ss_pred cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEE
Confidence 3433444 345655443211 1 01112211111111122222233345567888888888
Q ss_pred EEeeC---CC-eEEEEECCC-CceEEeecC---CCCeeEEEEcCCCcEEE--Ee-c---CCeEEEEecCCceeeEEEcCC
Q 018860 162 STCTD---MG-GVRLWDVRS-GEIVQTLET---KSPVTSAEVSQDGRYIT--TA-D---GSTVKFWDANHFGLVKSYNMP 227 (349)
Q Consensus 162 ~~~~~---dg-~v~vwd~~~-~~~~~~~~~---~~~v~~~~~~~~~~~l~--~~-~---d~~i~iwd~~~~~~~~~~~~~ 227 (349)
+-|-. +. .-|||-+++ +.....+.. ...+.-=.|.|||..+. .. . +..|.-+|+.+.........+
T Consensus 204 ~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p 283 (386)
T PF14583_consen 204 MFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP 283 (386)
T ss_dssp EEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-
T ss_pred EEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC
Confidence 87754 22 247887754 333333322 12244446888986542 11 1 335666777776554444333
Q ss_pred CceEEeeecCCCCCEEEEecCC----------------CeEEEEeCCCCcEEEE---------ecCCCc-ceeEEEEccC
Q 018860 228 CTIESASLEPKYGNKFVAGGED----------------MWVRFFDFHTGNEIAC---------NKGHHG-PVHCVRFSPG 281 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~d----------------~~i~v~d~~~~~~~~~---------~~~h~~-~i~~l~~sp~ 281 (349)
. +.--....++++++--|.| -.|+++++..+..... +.+|.. .=....||||
T Consensus 284 ~--~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPD 361 (386)
T PF14583_consen 284 W--CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPD 361 (386)
T ss_dssp S--EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TT
T ss_pred c--eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCC
Confidence 2 1111122345555432332 2677888877654311 111111 1145789999
Q ss_pred CCeEE-EecCCCCEEEecC
Q 018860 282 GESYA-SGSEDGTIRIWQT 299 (349)
Q Consensus 282 ~~~l~-sgs~Dg~v~vW~~ 299 (349)
+++++ +....|...||-+
T Consensus 362 gk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 362 GKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp SSEEEEEE-TTSS-EEEEE
T ss_pred CCEEEEECCCCCCccEEEE
Confidence 99864 7777888777744
No 359
>PHA02713 hypothetical protein; Provisional
Probab=97.33 E-value=0.019 Score=55.09 Aligned_cols=219 Identities=10% Similarity=-0.007 Sum_probs=104.0
Q ss_pred CeEEEeCCCCCeEE--EeecccCCeEEEEECCCCCeeEEeeCC------CeEEEEECCCCCEEEEec---cCCeEEEEEE
Q 018860 42 SPMLRNGETGDWIG--TFEGHKGAVWSCCLDTNALRAASASAD------FSAKVWDALTGDVLHSFE---HKHIVRACSF 110 (349)
Q Consensus 42 ~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~---~~~~v~~~~~ 110 (349)
.+..||..+.++.. .+...... .+++. .++...+.||.+ ..+..+|..+..- ..+. .+..-.++ .
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~-~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSL-A 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeE-E
Confidence 45677877766542 22111111 12222 355666777754 3466777765532 1111 11111111 1
Q ss_pred cCCCCEEEEEeCCC-----eEEEEECCCCCCCCc-eeccCCCCeEEEEEecCCCeEEEEeeCC-----------------
Q 018860 111 SEDTHLLLTGGMEK-----ILRIFDLNRPDAPPR-EVDRSPGSVRTVAWLHSDQTILSTCTDM----------------- 167 (349)
Q Consensus 111 s~~~~~l~s~~~d~-----~i~lwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------------- 167 (349)
.-++...+.||.++ .+..||..+...... .+.........+. -++.+.+.|+.+
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~---~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV---LDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE---ECCEEEEEeCCCccccccccccccccccc
Confidence 22567777787653 477899765432111 1111111111122 245555555432
Q ss_pred ------CeEEEEECCCCceEEeecC--CCCeeEEEEcCCCcEEEEecC------CeEEEEecCC-ceeeEEEcCCCce--
Q 018860 168 ------GGVRLWDVRSGEIVQTLET--KSPVTSAEVSQDGRYITTADG------STVKFWDANH-FGLVKSYNMPCTI-- 230 (349)
Q Consensus 168 ------g~v~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~d------~~i~iwd~~~-~~~~~~~~~~~~~-- 230 (349)
..+..||+++.++...-.. ...-.+++...+.-+++++.+ ..+..||..+ .+-...-.++...
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 3588899988876532221 111112222323334555432 2467899876 3322222232221
Q ss_pred EEeeecCCCCCEEEEecCCC--eEEEEeCCCCcEEEEecCC
Q 018860 231 ESASLEPKYGNKFVAGGEDM--WVRFFDFHTGNEIACNKGH 269 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~d~--~i~v~d~~~~~~~~~~~~h 269 (349)
..++. -++..++.||.|+ .+..||..+.+-...-..|
T Consensus 506 ~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 506 LHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred ceeEE--ECCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 22222 2477888999888 7788887776654333334
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.14 Score=46.81 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=141.5
Q ss_pred EEEEECCCCC-eeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCCCCce
Q 018860 65 WSCCLDTNAL-RAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGM---EKILRIFDLNRPDAPPRE 140 (349)
Q Consensus 65 ~~~~~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~lwd~~~~~~~~~~ 140 (349)
..+++++.+. ..++...+..|.+.|..+....+...-......++++|+++.+..+.. ++++.+.|-.+.......
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 3567777766 556666678999999888777777765556788999999987776654 677777776544332221
Q ss_pred eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEE-e----ecCCCCeeEEEEcCCCcEEEEec--C--CeEE
Q 018860 141 VDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQ-T----LETKSPVTSAEVSQDGRYITTAD--G--STVK 211 (349)
Q Consensus 141 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-~----~~~~~~v~~~~~~~~~~~l~~~~--d--~~i~ 211 (349)
..+ ..+ ..+++.|.+..+..+-..++.|.+.|........ . +.....-..+.+.+++..+.... + +.+.
T Consensus 157 ~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 157 PVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred ecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 111 122 6778888888777777778999999987665553 1 22222235678899998664432 2 5888
Q ss_pred EEecCCceeeEE-EcCCC-ceEEeeecCCCCCEEEEe-cCCCeEEEEeCCCCcEEEEecCC---CcceeEEEEccCC
Q 018860 212 FWDANHFGLVKS-YNMPC-TIESASLEPKYGNKFVAG-GEDMWVRFFDFHTGNEIACNKGH---HGPVHCVRFSPGG 282 (349)
Q Consensus 212 iwd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~h---~~~i~~l~~sp~~ 282 (349)
..|..+...... ..... ....+.+.|. +..+... ...+.+.+.|..+.......... ...+..+++.+..
T Consensus 235 ~id~~~~~v~~~~~~~~~~~~~~v~~~p~-g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 235 KIDTATGNVTATDLPVGSGAPRGVAVDPA-GKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEeCCCceEEEeccccccCCCCceeECCC-CCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 888887766554 22222 3455677775 5555555 55689999999887776654332 2346666776654
No 361
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.22 E-value=0.13 Score=45.19 Aligned_cols=195 Identities=18% Similarity=0.191 Sum_probs=110.4
Q ss_pred CCccEEEEEec--CCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECC-CCCEEEEec---c-
Q 018860 29 PDGFFLISASK--DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDAL-TGDVLHSFE---H- 101 (349)
Q Consensus 29 ~~~~~l~s~s~--d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~-~~~~~~~~~---~- 101 (349)
.||++++.... ...+.+.|.+..+.+.++.-.. ++ ..+......+.+-+.||++.-..+. .|+...... +
T Consensus 104 ~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~-~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~ 180 (342)
T PF06433_consen 104 ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CW-LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP 180 (342)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EE-EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESST
T ss_pred cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EE-EEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCC
Confidence 36776655432 2346777777777777765321 11 1122223457888889998888876 555542211 1
Q ss_pred -CC-eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc---e--------eccCCCCeEEEEEecCCCeEEEEee--C
Q 018860 102 -KH-IVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR---E--------VDRSPGSVRTVAWLHSDQTILSTCT--D 166 (349)
Q Consensus 102 -~~-~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~---~--------~~~~~~~i~~~~~~~~~~~~l~~~~--~ 166 (349)
.. .+..-++...+..++--+.+|.|+--|+........ . -.--++...-+++++..+.+.+.-- .
T Consensus 181 ~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 181 DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence 11 122223333444444457778777777653321000 0 0011233445666666665544321 1
Q ss_pred C-------CeEEEEECCCCceEEeecCCCCeeEEEEcCCCc-EEE-Ee-cCCeEEEEecCCceeeEEEcC
Q 018860 167 M-------GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGR-YIT-TA-DGSTVKFWDANHFGLVKSYNM 226 (349)
Q Consensus 167 d-------g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~-~~-~d~~i~iwd~~~~~~~~~~~~ 226 (349)
+ ..|-++|+.+++.+..++...++.++.++.+.+ +|. .. .++.+.+||..+++.++....
T Consensus 261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 1 158888999999999998777888999998875 443 33 478999999999998877653
No 362
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.16 E-value=0.15 Score=46.05 Aligned_cols=217 Identities=13% Similarity=0.100 Sum_probs=110.3
Q ss_pred CCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceecc-------C---------
Q 018860 81 ADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDR-------S--------- 144 (349)
Q Consensus 81 ~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~-------~--------- 144 (349)
..+.+.|+|+.+++..........+....|+|+|+.++-.. ++.|.++++...........+ .
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred cceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 35678899999876655544456678899999999988765 567888876533211111111 1
Q ss_pred CCCeEEEEEecCCCeEEEEeeCCCe-----------------------------------EEEEECCCCceEE-eec---
Q 018860 145 PGSVRTVAWLHSDQTILSTCTDMGG-----------------------------------VRLWDVRSGEIVQ-TLE--- 185 (349)
Q Consensus 145 ~~~i~~~~~~~~~~~~l~~~~~dg~-----------------------------------v~vwd~~~~~~~~-~~~--- 185 (349)
.+.-.++-|+|++.+++..--++.. +.|+|+.+++... ...
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 1123567788877776655444433 3344554443311 111
Q ss_pred --CCCCeeEEEEcCCCc-EEEEe--cC---CeEEEEecCCceeeEEEcC--CC---ceEEeeec-CCCCCEEEEecCCC-
Q 018860 186 --TKSPVTSAEVSQDGR-YITTA--DG---STVKFWDANHFGLVKSYNM--PC---TIESASLE-PKYGNKFVAGGEDM- 250 (349)
Q Consensus 186 --~~~~v~~~~~~~~~~-~l~~~--~d---~~i~iwd~~~~~~~~~~~~--~~---~~~~~~~~-~~~~~~~~~~~~d~- 250 (349)
...-+..+.|.+++. +++.- .+ ..+.+.|..++........ +. ......+. +....++.....||
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 112355667777776 43332 22 1355567655433222211 10 11123333 44344444444666
Q ss_pred -eEEEEeCCCCcEEEEecCCCcceeE-EEEccCCCeEE-EecCC--CCEEEecC
Q 018860 251 -WVRFFDFHTGNEIACNKGHHGPVHC-VRFSPGGESYA-SGSED--GTIRIWQT 299 (349)
Q Consensus 251 -~i~v~d~~~~~~~~~~~~h~~~i~~-l~~sp~~~~l~-sgs~D--g~v~vW~~ 299 (349)
.|++++...+. ...+....-.|.. +.++++++.|+ ++..+ ..-.||.+
T Consensus 260 ~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 260 RHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp EEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred cEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 45555665554 3455545556744 67788877653 55543 35566654
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0026 Score=58.92 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=70.6
Q ss_pred eeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeE-EEEECCCCCeeEEeeCCCeEEEEECCCCCEEE
Q 018860 19 VVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVW-SCCLDTNALRAASASADFSAKVWDALTGDVLH 97 (349)
Q Consensus 19 v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~ 97 (349)
|--+.|+| .-..+|.+..+|.+.+.... ..-+.++.-|...++ +++|.|||+.||.|=.||+|++-|+.++..+.
T Consensus 23 i~~~ewnP---~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 23 IKRIEWNP---KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred eEEEEEcC---ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 34566776 55589999999998888766 566778876777777 99999999999999999999999999998777
Q ss_pred Ee--ccCCeEEEEEEc
Q 018860 98 SF--EHKHIVRACSFS 111 (349)
Q Consensus 98 ~~--~~~~~v~~~~~s 111 (349)
.+ -....|.++-|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 63 334456666665
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.12 E-value=0.21 Score=45.62 Aligned_cols=169 Identities=14% Similarity=0.119 Sum_probs=93.8
Q ss_pred ecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec---------cCCeEEEEEEc-----CCC---CEEEEE
Q 018860 58 EGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE---------HKHIVRACSFS-----EDT---HLLLTG 120 (349)
Q Consensus 58 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~---------~~~~v~~~~~s-----~~~---~~l~s~ 120 (349)
+..+++|.+++.+.=| +++.|..+|.+.|-|++....++.-. ....++++.|+ .|+ -.+++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3457889999998666 78999999999999998777666532 12357788875 233 368889
Q ss_pred eCCCeEEEEECCCCCCCCc------eeccCCCCeEEEEEec-C--------------------CCeEEEEeeCCCeEEEE
Q 018860 121 GMEKILRIFDLNRPDAPPR------EVDRSPGSVRTVAWLH-S--------------------DQTILSTCTDMGGVRLW 173 (349)
Q Consensus 121 ~~d~~i~lwd~~~~~~~~~------~~~~~~~~i~~~~~~~-~--------------------~~~~l~~~~~dg~v~vw 173 (349)
...|.+.+|.+........ ....+.+++..+.... . -..+++.++. ..+|++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe-~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE-SDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S-SEEEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc-cceEEE
Confidence 9999999998742111000 1113445555554321 1 0124444554 789999
Q ss_pred ECCCCceEEeecCC-CCeeEEEEc-----CCCcEEEE-ecCCeEEEEecCCceeeEEEcCCC
Q 018860 174 DVRSGEIVQTLETK-SPVTSAEVS-----QDGRYITT-ADGSTVKFWDANHFGLVKSYNMPC 228 (349)
Q Consensus 174 d~~~~~~~~~~~~~-~~v~~~~~~-----~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~ 228 (349)
.+.+.+..+..... ..+..+.+- ..+..|++ ..+|.++++.+-..+.+.....+.
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~ 302 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP 302 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCC
Confidence 99888776655422 223333442 23344444 568999999999988888777653
No 365
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.11 E-value=0.078 Score=50.95 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=111.2
Q ss_pred CCCeeEEeeCC------CeEEEEECCCCCEEEEe--ccCCeEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCCC
Q 018860 72 NALRAASASAD------FSAKVWDALTGDVLHSF--EHKHIVRACSFSEDTHLLLTGGME------KILRIFDLNRPDAP 137 (349)
Q Consensus 72 ~~~~l~s~s~D------~~i~vWd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d------~~i~lwd~~~~~~~ 137 (349)
.+..++.||.+ ..+..+|..+++-.... ..+..-.+++.. ++...++||.| .++-.||....+..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 34556667766 36778888776433222 222222333333 45677888888 34556776654422
Q ss_pred CceeccCCCCeEEEEEecCCCeEEEEeeCCC-----eEEEEECCCCceEEeecCCCCeeEEE-EcCCCcE-EEEecC---
Q 018860 138 PREVDRSPGSVRTVAWLHSDQTILSTCTDMG-----GVRLWDVRSGEIVQTLETKSPVTSAE-VSQDGRY-ITTADG--- 207 (349)
Q Consensus 138 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~v~vwd~~~~~~~~~~~~~~~v~~~~-~~~~~~~-l~~~~d--- 207 (349)
. ...-...-.......-++.+.+.|+.+| ++..||+++.++-..-.......... ..-+|++ ++++.+
T Consensus 363 ~--~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 P--VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred c--cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 1 1111111111111123566666676665 58899998877643322221211111 1224544 344433
Q ss_pred ---CeEEEEecCCceeeEEEcCCCce--EEeeecCCCCCEEEEecCCC-----eEEEEeCCCCcEEEE--ecCCCcceeE
Q 018860 208 ---STVKFWDANHFGLVKSYNMPCTI--ESASLEPKYGNKFVAGGEDM-----WVRFFDFHTGNEIAC--NKGHHGPVHC 275 (349)
Q Consensus 208 ---~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~-----~i~v~d~~~~~~~~~--~~~h~~~i~~ 275 (349)
.++..||..+..-...-.+...- ..++. -++..++.||.|+ ++..||..+.+.... .......+..
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV 518 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence 35788988765433322222111 12222 2367788888775 377888877654332 1111122222
Q ss_pred EEEccCCCeEEEecCCCC-----EEEecC
Q 018860 276 VRFSPGGESYASGSEDGT-----IRIWQT 299 (349)
Q Consensus 276 l~~sp~~~~l~sgs~Dg~-----v~vW~~ 299 (349)
+.. ++...+.|+.||. |..||+
T Consensus 519 ~~~--~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 519 VVL--GGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred EEE--CCEEEEEecccCccccceeEEcCC
Confidence 222 5566778888874 445654
No 366
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.082 Score=45.06 Aligned_cols=196 Identities=12% Similarity=0.177 Sum_probs=120.1
Q ss_pred ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC--CCeeEEEEcCCCcEEEEec-CCeEEEEecCCc
Q 018860 142 DRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK--SPVTSAEVSQDGRYITTAD-GSTVKFWDANHF 218 (349)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~ 218 (349)
.+....+.++.|+|+...++++... ..-.||=...|..+.+++.. .....+.+..+++++++.+ ++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~-p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNK-PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCC-CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3444568999999998888877655 66777777889988887643 3445677788888877765 677777765443
Q ss_pred eeeE----------EEcC-CCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcE---EEEecCCC-------cceeEEE
Q 018860 219 GLVK----------SYNM-PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNE---IACNKGHH-------GPVHCVR 277 (349)
Q Consensus 219 ~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~h~-------~~i~~l~ 277 (349)
.... .... ++....+++.|. ++.|..+=+-+=+.+|.+..+.. +.....++ ..|.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~-~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPV-DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCC-CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 2111 1112 556788999986 45555555555555655543221 11112222 3477788
Q ss_pred EccC-CCeEEEecCCCCEEEecCCCCCCCcceeee-ccCeeeeeEeChhhhhccccceeecccccchhhhhh
Q 018860 278 FSPG-GESYASGSEDGTIRIWQTGPVTNDDTETLT-ANGTIGKVKVTADEVSRKIEGFHIADEGKMKEKEEA 347 (349)
Q Consensus 278 ~sp~-~~~l~sgs~Dg~v~vW~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (349)
|.+. +.+|+-+.+++.|.--+..... .+.+. .+|.-+ ...-....+|+.+.++|-+|.--||
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~~---~~~lsL~~g~~g-----L~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGEV---IELLSLTKGNHG-----LSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCCe---eeeEEeccCCCC-----CcccCCCcceeEECCCCCEEEEecC
Confidence 8865 5567778888887777654321 11111 122211 1233456699999999999875554
No 367
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.05 E-value=0.14 Score=47.17 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=27.2
Q ss_pred CcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 270 ~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
.+++..+++||+++++|.-..+|.+.+.+.+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 4689999999999999999999999888653
No 368
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.01 E-value=0.011 Score=55.53 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=85.8
Q ss_pred ccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec--cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC
Q 018860 60 HKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE--HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAP 137 (349)
Q Consensus 60 h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~ 137 (349)
|...|.=-+++..+.+|+-|+.-|.+.+++-..++....-. ....+..+..+++..++|.|++.+.|.++-++....+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44455556778889999999999999999987776543332 3345667788999999999999999999988763322
Q ss_pred Cce-----eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 018860 138 PRE-----VDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS 177 (349)
Q Consensus 138 ~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 177 (349)
... -..|+..|+++.|+++..+++ +|.+.|+|..-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence 211 134677899999997766655 667779888777665
No 369
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.00 E-value=0.28 Score=45.17 Aligned_cols=197 Identities=14% Similarity=0.208 Sum_probs=97.7
Q ss_pred CeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec----cCCe----EEEEEEcCC
Q 018860 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE----HKHI----VRACSFSED 113 (349)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~----~~~~----v~~~~~s~~ 113 (349)
.|.||+.. |+++.++.--.+.+.++.|+.+. .|+.-..||.++++|.... ....+. .... +....+...
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~-~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE-FQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc-eeechhhhccccCcccccccccccCCC
Confidence 48888864 67777766545889999998865 4667779999999998633 321121 1111 122233335
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeE---------E-EEEecCCCeEEEEeeCCCeEEEEECCCCceEEe
Q 018860 114 THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVR---------T-VAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQT 183 (349)
Q Consensus 114 ~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~---------~-~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 183 (349)
|-.+++.. ...+.+-+...+.. .+.+...+.... . ..+.......+.. ...+.+.+-+-... ..
T Consensus 139 GivvLt~~-~~~~~v~n~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~-~~g~~i~~i~~~~~---~~ 212 (410)
T PF04841_consen 139 GIVVLTGN-NRFYVVNNIDEPVK-LRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILL-ANGETIYIIDENSF---KQ 212 (410)
T ss_pred CEEEECCC-CeEEEEeCccccch-hhccccCCCcccccccccccccceEeecCcceEEEE-ecCCEEEEEEcccc---cc
Confidence 54444432 22222222221100 011111111111 0 1122222222222 22244443332211 11
Q ss_pred ecCCCCeeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEE
Q 018860 184 LETKSPVTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFF 255 (349)
Q Consensus 184 ~~~~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~ 255 (349)
+...+++..+++||++++++.- .+|.+.+.+..-.+....+.... . .....++-+|+|..+..|
T Consensus 213 i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~------~--~~p~~~~WCG~dav~l~~ 277 (410)
T PF04841_consen 213 IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS------K--SPPKQMAWCGNDAVVLSW 277 (410)
T ss_pred ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc------C--CCCcEEEEECCCcEEEEe
Confidence 3334679999999999998764 56888887765444443343331 0 012345666666666556
No 370
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.98 E-value=0.18 Score=45.96 Aligned_cols=190 Identities=13% Similarity=0.120 Sum_probs=98.2
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEE--eec------ccCCeEEEEEC-----CCC---Ce
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGT--FEG------HKGAVWSCCLD-----TNA---LR 75 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~--~~~------h~~~v~~~~~~-----~~~---~~ 75 (349)
+...+++|++++.|. =-+++.|..+|.+.|.|......+.. +.. ....|+++.|. .|+ ..
T Consensus 82 ~~~~~g~vtal~~S~----iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 82 LDAKQGPVTALKNSD----IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp E---S-SEEEEEE-B----TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eeccCCcEeEEecCC----CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 345689999999984 44899999999999999975555433 222 23457788874 233 57
Q ss_pred eEEeeCCCeEEEEECC--C-CCE----EEEe-ccCCeEEEEE-EcCC-C-------------------CEEEEEeCCCeE
Q 018860 76 AASASADFSAKVWDAL--T-GDV----LHSF-EHKHIVRACS-FSED-T-------------------HLLLTGGMEKIL 126 (349)
Q Consensus 76 l~s~s~D~~i~vWd~~--~-~~~----~~~~-~~~~~v~~~~-~s~~-~-------------------~~l~s~~~d~~i 126 (349)
|+.|-..|.+.+|.+. . +.- .... .+...|..+. |..+ | .-++....+..+
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 8888899999999764 1 211 1111 2344444433 3211 1 123333446779
Q ss_pred EEEECCCCCCCCceeccCCCCeEEEEEe----cCCCeEEEEeeCCCeEEEEECCCCceEEeecCCC-----CeeEEEEcC
Q 018860 127 RIFDLNRPDAPPREVDRSPGSVRTVAWL----HSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKS-----PVTSAEVSQ 197 (349)
Q Consensus 127 ~lwd~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-----~v~~~~~~~ 197 (349)
|++.+.+.+...+.. ..+.....+.+. ...+..|++-..+|.++++.+..-+.+..+.... ......+++
T Consensus 238 rv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 999987654332222 221222334443 2345566666778999999999887776665422 123445567
Q ss_pred CCcEEEEec
Q 018860 198 DGRYITTAD 206 (349)
Q Consensus 198 ~~~~l~~~~ 206 (349)
+|..+.-..
T Consensus 317 ~Gdi~~~~g 325 (395)
T PF08596_consen 317 NGDIFYWTG 325 (395)
T ss_dssp TS-EEEE-S
T ss_pred CCCEEEEeC
Confidence 776554433
No 371
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.93 E-value=0.17 Score=42.43 Aligned_cols=112 Identities=13% Similarity=0.037 Sum_probs=72.5
Q ss_pred cCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCC--eeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEE
Q 018860 155 HSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSP--VTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIES 232 (349)
Q Consensus 155 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 232 (349)
++...++..++-.+.+.--|..+|...-....... ...+.+ .+..+.++..+.+.+.+.+++.....+..-..+-.
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv--gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV--GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE--CCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence 44456666677777788888888876533222222 222221 22345667788899999998877766655443322
Q ss_pred eeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecC
Q 018860 233 ASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKG 268 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~ 268 (349)
-+....++..+..|+.|+..+..|.++...+...+.
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 222223478899999999999999999888776653
No 372
>PHA02713 hypothetical protein; Provisional
Probab=96.85 E-value=0.21 Score=47.99 Aligned_cols=206 Identities=10% Similarity=0.035 Sum_probs=96.5
Q ss_pred eEEEEECCCCCEEE--EeccCCeEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCCCCceeccCCCC--eEEEEE
Q 018860 84 SAKVWDALTGDVLH--SFEHKHIVRACSFSEDTHLLLTGGME------KILRIFDLNRPDAPPREVDRSPGS--VRTVAW 153 (349)
Q Consensus 84 ~i~vWd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d------~~i~lwd~~~~~~~~~~~~~~~~~--i~~~~~ 153 (349)
.+..||..+.+-.. .+..+..-.+++. .++...+.||.+ ..+..||+.+.... ....-+.+ -.+++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~--~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHV--ELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEe--eCCCCcchhhceeEEE
Confidence 46678877654221 1111111112222 356677777754 23667787654321 11111111 112222
Q ss_pred ecCCCeEEEEeeCC-----CeEEEEECCCCceEEeecCCCC--eeEEEEcCCCcE-EEEecC------------------
Q 018860 154 LHSDQTILSTCTDM-----GGVRLWDVRSGEIVQTLETKSP--VTSAEVSQDGRY-ITTADG------------------ 207 (349)
Q Consensus 154 ~~~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~-l~~~~d------------------ 207 (349)
-++.+.+.|+.+ .++..||+.+.++...-....+ -.++... ++++ +.++.+
T Consensus 350 --~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 --IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred --ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE-CCEEEEEeCCCcccccccccccccccccc
Confidence 244555555543 3588999998876542221111 1122222 4444 444432
Q ss_pred -----CeEEEEecCCceeeEEEcCCCc--eEEeeecCCCCCEEEEecCC------CeEEEEeCCC-CcEE--EEecCCCc
Q 018860 208 -----STVKFWDANHFGLVKSYNMPCT--IESASLEPKYGNKFVAGGED------MWVRFFDFHT-GNEI--ACNKGHHG 271 (349)
Q Consensus 208 -----~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d------~~i~v~d~~~-~~~~--~~~~~h~~ 271 (349)
..+..||+.+.+-...-.++.. ...++. -++..++.||.+ ..+..||..+ .+-. ..+...-.
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 2467788766433222222111 111222 136677777754 2467899887 4432 22222112
Q ss_pred ceeEEEEccCCCeEEEecCCC--CEEEecC
Q 018860 272 PVHCVRFSPGGESYASGSEDG--TIRIWQT 299 (349)
Q Consensus 272 ~i~~l~~sp~~~~l~sgs~Dg--~v~vW~~ 299 (349)
....+++ ++...+.|+.|| ++..||+
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCc
Confidence 2222233 677888999998 5555654
No 373
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.82 E-value=0.14 Score=44.84 Aligned_cols=149 Identities=9% Similarity=0.118 Sum_probs=78.0
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEE-CCCCCE
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWD-ALTGDV 95 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd-~~~~~~ 95 (349)
+.+..+..++ ||++++.+++-....-|+.-...+...-+.-+..|..+.|.+++...+ ....|.|+.=+ ....+.
T Consensus 145 gs~~~~~r~~---dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 145 GSINDITRSS---DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGET 220 (302)
T ss_dssp --EEEEEE-T---TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEE
T ss_pred ceeEeEEECC---CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccc
Confidence 4566666654 899988776655566777554446555555678899999999987555 44888888777 222222
Q ss_pred EEE--ec---cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCce--eccCCCCeEEEEEecCCCeEEEEeeCCC
Q 018860 96 LHS--FE---HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPRE--VDRSPGSVRTVAWLHSDQTILSTCTDMG 168 (349)
Q Consensus 96 ~~~--~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg 168 (349)
... .. ..-.+..++|.+++...++|+.... +...+..+...+. ....+..+..+.|.+++ +-++.+. +|
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l--~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG~-~G 296 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL--LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLGQ-DG 296 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEESTT-E--EEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE-S-TT
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCCccE--EEeCCCCccceECccccCCCCceEEEEEcCCC-ceEEECC-Cc
Confidence 211 11 1224789999999888887765532 3343444433322 22345668889888664 4444444 47
Q ss_pred eEEEE
Q 018860 169 GVRLW 173 (349)
Q Consensus 169 ~v~vw 173 (349)
.|.-|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77555
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0099 Score=55.27 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=58.8
Q ss_pred CeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCeEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 018860 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHIVR-ACSFSEDTHLLLTGGMEKILRIFDLNRPD 135 (349)
Q Consensus 63 ~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~v~-~~~~s~~~~~l~s~~~d~~i~lwd~~~~~ 135 (349)
.|.-+.|+|....+|.+-.+|.|-+..++ -+.+-++. +...++ +++|.|||++|+.|-.||+|++-|+.++.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 35567888888899999999988888777 55556665 555565 99999999999999999999999997654
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.78 E-value=0.23 Score=47.84 Aligned_cols=136 Identities=14% Similarity=0.077 Sum_probs=74.6
Q ss_pred ceeeEEEeecCCCccEEEEEe------cCCCeEEEeCC-CCCeEEEeecccCCeEEEEECCCCCeeEEeeCC-CeEEEE-
Q 018860 18 PVVDLFYSPITPDGFFLISAS------KDSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDTNALRAASASAD-FSAKVW- 88 (349)
Q Consensus 18 ~v~~~~fs~~~~~~~~l~s~s------~d~~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D-~~i~vW- 88 (349)
.+...+.|| +|+.++... .|..-.+|-.. .+.....+.+. ....-.|++++..|++.+.. ..+++.
T Consensus 351 ~vsspaiSp---dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 351 NITSAALSR---SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred CcccceECC---CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 455666665 888776555 24455666433 22232223333 25667899998888777532 223333
Q ss_pred ----------ECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECC---CCCCCC---ceec-cCCCCeEEE
Q 018860 89 ----------DALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLN---RPDAPP---REVD-RSPGSVRTV 151 (349)
Q Consensus 89 ----------d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~---~~~~~~---~~~~-~~~~~i~~~ 151 (349)
++..++... .....|..+.|||||..++... ++.+.+--+. ...... +.+. .......++
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 333333222 2345799999999999887755 4666663222 111111 1121 222335778
Q ss_pred EEecCCCeEE
Q 018860 152 AWLHSDQTIL 161 (349)
Q Consensus 152 ~~~~~~~~~l 161 (349)
.|...+..++
T Consensus 503 ~W~~~~~L~V 512 (591)
T PRK13616 503 DWRTGDSLVV 512 (591)
T ss_pred eEecCCEEEE
Confidence 9987666443
No 376
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.70 E-value=0.76 Score=45.64 Aligned_cols=276 Identities=13% Similarity=0.124 Sum_probs=137.0
Q ss_pred CCceeeEEEeecCCC---ccEEEEEecCCCeEEEe-CCCCCeEEE--eecc--cCCeEEEEECCCCCeeEEeeCCCeEEE
Q 018860 16 SRPVVDLFYSPITPD---GFFLISASKDSSPMLRN-GETGDWIGT--FEGH--KGAVWSCCLDTNALRAASASADFSAKV 87 (349)
Q Consensus 16 ~~~v~~~~fs~~~~~---~~~l~s~s~d~~i~iw~-~~~~~~~~~--~~~h--~~~v~~~~~~~~~~~l~s~s~D~~i~v 87 (349)
...|.|+.++|...+ +++++.|..+..+.+-- ..+...+.. +.+- ...|.-.+|-.|..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 357889999987433 34899999988765542 233332221 2221 234566677777889999999999887
Q ss_pred EEC--CCCCEEEEe---ccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeE-EEEEec-CCCe
Q 018860 88 WDA--LTGDVLHSF---EHKHIVRACSFSED-THLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVR-TVAWLH-SDQT 159 (349)
Q Consensus 88 Wd~--~~~~~~~~~---~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~-~~~~~~-~~~~ 159 (349)
+.+ .+|+....- -...++.--.|+.. ++.+++++. +-..+|.-+. +.....+. -..+. .+.|.. ..+.
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sd-rP~viY~~n~-kLv~spls--~kev~~~c~f~s~a~~d 685 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSD-RPTVIYSSNG-KLVYSPLS--LKEVNHMCPFNSDAYPD 685 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCC-CCEEEEecCC-cEEEeccc--hHHhhhhcccccccCCc
Confidence 754 444321111 12234444455543 445555554 4444554321 11000000 00111 111211 1122
Q ss_pred EEEEeeCCCeEEEEECCC--CceEEeecCCCCeeEEEEcCCCcEEEEecC---------------CeEEEEecCCceeeE
Q 018860 160 ILSTCTDMGGVRLWDVRS--GEIVQTLETKSPVTSAEVSQDGRYITTADG---------------STVKFWDANHFGLVK 222 (349)
Q Consensus 160 ~l~~~~~dg~v~vwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d---------------~~i~iwd~~~~~~~~ 222 (349)
.++.+.. +.+++.-+.. .-.+++++.+.....+++.+...++....+ ..++++|.++++.+.
T Consensus 686 ~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~ 764 (1096)
T KOG1897|consen 686 SLASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS 764 (1096)
T ss_pred eEEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence 2333333 5566654432 112334554555566666653333222111 137778887777665
Q ss_pred EEcCCC-----ceEEeeecCCCCCEEEEec----------CCCeE-----------------------------------
Q 018860 223 SYNMPC-----TIESASLEPKYGNKFVAGG----------EDMWV----------------------------------- 252 (349)
Q Consensus 223 ~~~~~~-----~~~~~~~~~~~~~~~~~~~----------~d~~i----------------------------------- 252 (349)
.+.... .+.+..|..+.+.+++.|+ ..|.|
T Consensus 765 ~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA 844 (1096)
T KOG1897|consen 765 SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLA 844 (1096)
T ss_pred eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEE
Confidence 544321 2223334433344444443 12444
Q ss_pred ------EEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEE
Q 018860 253 ------RFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRI 296 (349)
Q Consensus 253 ------~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~v 296 (349)
|+|++.+.+.++.-..|..++..+...-.++.++.|.-=+.+.+
T Consensus 845 ~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 845 GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 44444444344333456667777777777777777776666555
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.045 Score=50.13 Aligned_cols=139 Identities=15% Similarity=0.179 Sum_probs=94.4
Q ss_pred eeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCCCCCce-eccC--
Q 018860 75 RAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTH-------LLLTGGMEKILRIFDLNRPDAPPRE-VDRS-- 144 (349)
Q Consensus 75 ~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~s~~~d~~i~lwd~~~~~~~~~~-~~~~-- 144 (349)
.|.+++....+.--|++.|+.+.......-|+.+.+.|+.+ .-+.|-.|..|.-||++-....... .+.|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 56677777778888999999998887666688888887653 2234667788888998744331111 1111
Q ss_pred --CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEe-ecC-CCCeeEEEEcCCCcEEEEecCCeEEEEecC
Q 018860 145 --PGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQT-LET-KSPVTSAEVSQDGRYITTADGSTVKFWDAN 216 (349)
Q Consensus 145 --~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~ 216 (349)
.....|.+ ...++++ +.|+.+|.||+||. .++..++ ++. ..+|..+..+.+|+++.+.-+.++.+.++.
T Consensus 428 ~~k~nFsc~a-TT~sG~I-vvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFA-TTESGYI-VVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccccccceee-ecCCceE-EEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 11233333 2344554 45677799999996 6655544 343 568999999999999998888888888763
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.49 Score=41.60 Aligned_cols=206 Identities=14% Similarity=0.141 Sum_probs=112.3
Q ss_pred EEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec------cCCeEE
Q 018860 33 FLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE------HKHIVR 106 (349)
Q Consensus 33 ~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~------~~~~v~ 106 (349)
.+.+--..+.|.-|+..++.. ..+......-..+.++..+ .|+++... +.+++...+..+..+. .....+
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g-~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGG-RLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCC-eEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCC
Confidence 455555556777777765532 3343333222223444444 45555433 5567766554422221 113455
Q ss_pred EEEEcCCCCEEEEEeC---------CCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 018860 107 ACSFSEDTHLLLTGGM---------EKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS 177 (349)
Q Consensus 107 ~~~~s~~~~~l~s~~~---------d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 177 (349)
.+...|+|.+-++... -..-.+|.++......+.+..+-..-+.++|+|++..+..+=+..+.|.-|++..
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 6778888887665443 1122466654322222333333334467999998888877777667888877642
Q ss_pred --Cce-----EEeec-CCCCeeEEEEcCCCcEEEEec-C-CeEEEEecCCceeeEEEcCC-CceEEeeecCCCCCEE
Q 018860 178 --GEI-----VQTLE-TKSPVTSAEVSQDGRYITTAD-G-STVKFWDANHFGLVKSYNMP-CTIESASLEPKYGNKF 243 (349)
Q Consensus 178 --~~~-----~~~~~-~~~~v~~~~~~~~~~~l~~~~-d-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 243 (349)
+.. ...+. .....-.++...+|.+.+++. + +.|..|+.. ++++..+..| ..+..++|--.+.+.|
T Consensus 195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEE
Confidence 211 11111 112223445666777775443 3 389999998 8888888887 4555666653333333
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.44 E-value=0.95 Score=43.74 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=87.4
Q ss_pred CCCeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEee------CCCeEEEE--ECCCCCEEEEeccCCeEEEEEEc
Q 018860 40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASAS------ADFSAKVW--DALTGDVLHSFEHKHIVRACSFS 111 (349)
Q Consensus 40 d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~D~~i~vW--d~~~~~~~~~~~~~~~v~~~~~s 111 (349)
+|.+.-.+......+...-+....+...+++++++.++-.- .|..-.|| +. .+.. ..+........-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGHSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCCCCCCceEC
Confidence 66665544322222222223334577889999999877554 34444444 54 2322 222222336778899
Q ss_pred CCCCEEEEEeCC------------CeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEE---EECC
Q 018860 112 EDTHLLLTGGME------------KILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRL---WDVR 176 (349)
Q Consensus 112 ~~~~~l~s~~~d------------~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~v---wd~~ 176 (349)
|+|..|.+.... +.+.+.+++.... .. ...+.|.++.|+|++..+++.. +|.|.+ -...
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~--~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~ 479 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV--AS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTE 479 (591)
T ss_pred CCCCceEEEecCcceEEEeccCCCceEEEEeccCchh--hh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCC
Confidence 998877766432 1222223322111 11 2345799999999888877655 367766 3333
Q ss_pred CCce-E---EeecC--CCCeeEEEEcCCCcEEEEecCC
Q 018860 177 SGEI-V---QTLET--KSPVTSAEVSQDGRYITTADGS 208 (349)
Q Consensus 177 ~~~~-~---~~~~~--~~~v~~~~~~~~~~~l~~~~d~ 208 (349)
.|.. + ..+.. ...+..+.|..++.+++...++
T Consensus 480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~ 517 (591)
T PRK13616 480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP 517 (591)
T ss_pred CCceeecccEEeecccCCccccceEecCCEEEEEecCC
Confidence 4431 1 11211 2235778899999877655433
No 380
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.21 E-value=0.014 Score=35.25 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=27.7
Q ss_pred CcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 270 ~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
...|.+++|+|..++||.|+.||.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 457999999999999999999999999987
No 381
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.12 E-value=0.017 Score=47.16 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=57.0
Q ss_pred eEEeeCCCeEEEEECCCCCEEEEeccCCeEEEE-EEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEe
Q 018860 76 AASASADFSAKVWDALTGDVLHSFEHKHIVRAC-SFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWL 154 (349)
Q Consensus 76 l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~ 154 (349)
+..-+.|+.|+-+++...+....- ...+.+. ..-..+..++.|+.++.|.+|..+........+......+..+--.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rs--e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRS--ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhh--hhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 344466778777776433211110 0111111 1112345688899999999999863332222222222233332212
Q ss_pred cCCCeEEEEeeCCCeEEEEECCCCceEEeec
Q 018860 155 HSDQTILSTCTDMGGVRLWDVRSGEIVQTLE 185 (349)
Q Consensus 155 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 185 (349)
-.++.+..++..+|-||.|++.-++.+-...
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeec
Confidence 2334466677778999999988776654443
No 382
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.05 E-value=1.2 Score=41.08 Aligned_cols=234 Identities=17% Similarity=0.136 Sum_probs=117.3
Q ss_pred ecCCCccEEEEE-ecCC----CeEEEeCCCCCeEE-EeecccCCeEEEEECCCCCeeEEeeCCC-----------eEEEE
Q 018860 26 PITPDGFFLISA-SKDS----SPMLRNGETGDWIG-TFEGHKGAVWSCCLDTNALRAASASADF-----------SAKVW 88 (349)
Q Consensus 26 ~~~~~~~~l~s~-s~d~----~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~D~-----------~i~vW 88 (349)
..+|+|++||-+ +..| ++++.|.++++.+. .+..-.. ..+.|.++++.|+-...|. .|+.|
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 345699988755 4545 48999999997654 2332221 2389999988766554333 38888
Q ss_pred ECCCCCE--EEEec--cCCe-EEEEEEcCCCCEEEEEe---CC-CeEEEEECCCC---CCCCceecc-CCCCeEEEEEec
Q 018860 89 DALTGDV--LHSFE--HKHI-VRACSFSEDTHLLLTGG---ME-KILRIFDLNRP---DAPPREVDR-SPGSVRTVAWLH 155 (349)
Q Consensus 89 d~~~~~~--~~~~~--~~~~-v~~~~~s~~~~~l~s~~---~d-~~i~lwd~~~~---~~~~~~~~~-~~~~i~~~~~~~ 155 (349)
.+.+... ...++ .... ...+..++++++|+... .+ ..+.+.++... ....+.+.. ..+....+...
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~- 286 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH- 286 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-
Confidence 8876642 23443 2333 56788999999876533 22 34667777653 222233332 23333334332
Q ss_pred CCCeEEEEe--eCCCeEEEEECCCCce---EEee-cCCCC--eeEEEEcCCCcEEEEecC--CeEEEEecCCceeeEEEc
Q 018860 156 SDQTILSTC--TDMGGVRLWDVRSGEI---VQTL-ETKSP--VTSAEVSQDGRYITTADG--STVKFWDANHFGLVKSYN 225 (349)
Q Consensus 156 ~~~~~l~~~--~~dg~v~vwd~~~~~~---~~~~-~~~~~--v~~~~~~~~~~~l~~~~d--~~i~iwd~~~~~~~~~~~ 225 (349)
.+..++.+- ...+.|...++..... ...+ +.... +..+....+..++..-.+ ..|+++++..........
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~ 366 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIP 366 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEE
T ss_pred CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeec
Confidence 333333332 2235677777776542 2233 33332 333433322222222334 368899998333333333
Q ss_pred CCCc--eEEeeecCCCCCEEEEec---CCCeEEEEeCCCCcE
Q 018860 226 MPCT--IESASLEPKYGNKFVAGG---EDMWVRFFDFHTGNE 262 (349)
Q Consensus 226 ~~~~--~~~~~~~~~~~~~~~~~~---~d~~i~v~d~~~~~~ 262 (349)
.+.. +......+..+..++..+ .-.+++.||+.+++.
T Consensus 367 ~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 367 LPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp SSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 3322 233333333233333322 235677788877665
No 383
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.99 E-value=1 Score=39.67 Aligned_cols=212 Identities=15% Similarity=0.084 Sum_probs=108.5
Q ss_pred ECCCCC-eeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCce---eccC
Q 018860 69 LDTNAL-RAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPRE---VDRS 144 (349)
Q Consensus 69 ~~~~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~---~~~~ 144 (349)
|.++.. .+.+--..+.|.-|+..+++ ...+..+..+.++..-..+..|+++.. -+.++++......... ....
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~-~~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGK-KRVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCc-eEEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCC
Confidence 444444 34444456777777776553 333444554555444444444444332 2456665322220000 0011
Q ss_pred -CCCeEEEEEecCCCeEEEEee-----C-----CCeEEEEECCCCceEEeecC-CCCeeEEEEcCCCcEEEEec--CCeE
Q 018860 145 -PGSVRTVAWLHSDQTILSTCT-----D-----MGGVRLWDVRSGEIVQTLET-KSPVTSAEVSQDGRYITTAD--GSTV 210 (349)
Q Consensus 145 -~~~i~~~~~~~~~~~~l~~~~-----~-----dg~v~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--d~~i 210 (349)
....+.+...+++..++.+.. . -|.|+..|. .+.....+.. -..-+.++|+||++.+..++ .+.|
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 112334444454444443333 1 134555554 3444433333 23346899999998776655 3666
Q ss_pred EEEecCC--c---ee--eEEEcC-CCceEEeeecCCCCCEEEEecCCC-eEEEEeCCCCcEEEEecCCCcceeEEEEc-c
Q 018860 211 KFWDANH--F---GL--VKSYNM-PCTIESASLEPKYGNKFVAGGEDM-WVRFFDFHTGNEIACNKGHHGPVHCVRFS-P 280 (349)
Q Consensus 211 ~iwd~~~--~---~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~-~i~v~d~~~~~~~~~~~~h~~~i~~l~~s-p 280 (349)
.-|++.. . .. ...+.. +..+..++... ++.+.+++..++ .|.+|+.. ++++..++-....+++++|- |
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCC
Confidence 6666542 1 11 111111 12233444443 366665555554 99999988 88888877666778888884 4
Q ss_pred CCCeEE
Q 018860 281 GGESYA 286 (349)
Q Consensus 281 ~~~~l~ 286 (349)
+.+.|.
T Consensus 266 ~~~~L~ 271 (307)
T COG3386 266 DLNTLY 271 (307)
T ss_pred CcCEEE
Confidence 445554
No 384
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.96 E-value=0.042 Score=33.19 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=29.0
Q ss_pred cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 018860 101 HKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132 (349)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~ 132 (349)
.+..|..++|+|...+||.++.+|.|.+++++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34579999999999999999999999999984
No 385
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=1 Score=38.66 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=103.1
Q ss_pred cCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecc-cCCeEEEEECCCCCeeEEeeCCCeEEEEECCC
Q 018860 14 GHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLDTNALRAASASADFSAKVWDALT 92 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~ 92 (349)
|-.+.|+++.|+| +.+.|.+........++-...|+.++++.-. -..-..+.+.-++++.++-=.++.+.++.+..
T Consensus 83 g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 83 GETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 3344599999998 6677888887788888888889999887531 11234567777788888877888888887765
Q ss_pred CCEEEEe----------cc-CCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC--ceeccC-------CCCeEEEE
Q 018860 93 GDVLHSF----------EH-KHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPP--REVDRS-------PGSVRTVA 152 (349)
Q Consensus 93 ~~~~~~~----------~~-~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~--~~~~~~-------~~~i~~~~ 152 (349)
...+..+ .+ +.....++|.|..+.|..+-.-.-+++|.+....... .....+ -..+..+.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 5322111 13 3457899999998888888877778888775322110 000000 11245566
Q ss_pred EecCCCeEEEEeeCCCeEEEEECC
Q 018860 153 WLHSDQTILSTCTDMGGVRLWDVR 176 (349)
Q Consensus 153 ~~~~~~~~l~~~~~dg~v~vwd~~ 176 (349)
|.+..+.+++-+..++.+...|..
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC
Confidence 666666666666665666555543
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.83 E-value=1 Score=38.35 Aligned_cols=187 Identities=16% Similarity=0.223 Sum_probs=109.6
Q ss_pred CEEEEeccC--CeEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCCCCceeccCCCCeE--EEEEecCCCeEEEEeeCC
Q 018860 94 DVLHSFEHK--HIVRACSFSEDTHLLLTGGMEK--ILRIFDLNRPDAPPREVDRSPGSVR--TVAWLHSDQTILSTCTDM 167 (349)
Q Consensus 94 ~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d~--~i~lwd~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~l~~~~~d 167 (349)
+.+..+.|. .....+.|..++.++-|.|.-| .|+.+|+.+.+.... ...+.... -++.. ++.+..-.-.+
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~--~~l~~~~FgEGit~~--~d~l~qLTWk~ 109 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS--VPLPPRYFGEGITIL--GDKLYQLTWKE 109 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE--EE-TTT--EEEEEEE--TTEEEEEESSS
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE--EECCccccceeEEEE--CCEEEEEEecC
Confidence 346666664 3567888878888888888655 688899876542111 11111121 12222 34455455667
Q ss_pred CeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEec-CCeEEEEecCCceeeEEEcCCC------ceEEeeecCCCC
Q 018860 168 GGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYNMPC------TIESASLEPKYG 240 (349)
Q Consensus 168 g~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~ 240 (349)
+...+||..+.+.+.++.....-..++ .+++.|..++ ...+.++|..+++..+.+.... .+..+-+. ++
T Consensus 110 ~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G 185 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NG 185 (264)
T ss_dssp SEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TT
T ss_pred CeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cC
Confidence 999999999998888887655444554 3455555544 6789999999988777665432 12333332 24
Q ss_pred CEEEEecCCCeEEEEeCCCCcEEEEec------------CC---CcceeEEEEccCCCeE-EEe
Q 018860 241 NKFVAGGEDMWVRFFDFHTGNEIACNK------------GH---HGPVHCVRFSPGGESY-ASG 288 (349)
Q Consensus 241 ~~~~~~~~d~~i~v~d~~~~~~~~~~~------------~h---~~~i~~l~~sp~~~~l-~sg 288 (349)
..+|=.=....|...|..+|+....+. .+ .+-.+.+|+.|..+.| +||
T Consensus 186 ~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 444444456788889999999877641 11 3457889998876654 555
No 387
>PRK13684 Ycf48-like protein; Provisional
Probab=95.81 E-value=1.1 Score=40.16 Aligned_cols=149 Identities=10% Similarity=0.021 Sum_probs=80.4
Q ss_pred CceeeEEEeecCCCccEEEEEecCCCeEE-EeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCE
Q 018860 17 RPVVDLFYSPITPDGFFLISASKDSSPML-RNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDV 95 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s~d~~i~i-w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~ 95 (349)
..+.++.+.| ++.+++.+ ..|.+.. ++.....+...-.+-...++++.+.+++..++. +..|.+++=....|+.
T Consensus 173 g~~~~i~~~~---~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 173 GVVRNLRRSP---DGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred ceEEEEEECC---CCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 3466777765 66666554 4455432 222212344433344567889999998876554 5567765433455554
Q ss_pred EEEeccC-----CeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCcee---ccCCCCeEEEEEecCCCeEEEEeeCC
Q 018860 96 LHSFEHK-----HIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREV---DRSPGSVRTVAWLHSDQTILSTCTDM 167 (349)
Q Consensus 96 ~~~~~~~-----~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~d 167 (349)
......+ ..+.++++.+++..++ ++.++.+. ...+.... .... ...+.....+.|..++ ..++.+. .
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~-~ 322 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKT-WEKDPVGEEVPSNFYKIVFLDPE-KGFVLGQ-R 322 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCC-CeECCcCCCCCcceEEEEEeCCC-ceEEECC-C
Confidence 3332221 3477889998877555 45566544 33332222 1111 1223356677776444 4455444 4
Q ss_pred CeEEEEEC
Q 018860 168 GGVRLWDV 175 (349)
Q Consensus 168 g~v~vwd~ 175 (349)
|.|..|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88877753
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.79 E-value=1.1 Score=38.35 Aligned_cols=187 Identities=16% Similarity=0.257 Sum_probs=103.9
Q ss_pred EEeecCCCccEEEEEecC-----CCeEEEeCCCC-CeEEEeecccCCeEEEEECCCCCeeEEeeC---------------
Q 018860 23 FYSPITPDGFFLISASKD-----SSPMLRNGETG-DWIGTFEGHKGAVWSCCLDTNALRAASASA--------------- 81 (349)
Q Consensus 23 ~fs~~~~~~~~l~s~s~d-----~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--------------- 81 (349)
.||| ||.+|...=.| |.|-+||...+ ..+..+..|--.-..+.+.+||+.++.+..
T Consensus 120 vfs~---dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSP---DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccCC---CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence 3675 89888766444 56889987643 456777777655677889999998887643
Q ss_pred ---CCeEEEEECCCCCEEEE--ec---cCCeEEEEEEcCCCCEEEEEeCCCeEE----EEECCCCCCCCcee-------c
Q 018860 82 ---DFSAKVWDALTGDVLHS--FE---HKHIVRACSFSEDTHLLLTGGMEKILR----IFDLNRPDAPPREV-------D 142 (349)
Q Consensus 82 ---D~~i~vWd~~~~~~~~~--~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~----lwd~~~~~~~~~~~-------~ 142 (349)
.-++.+-|..+|+.+.. +. +...|+-++.-+||...+.+-..|.-. +--......+...+ .
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~ 276 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA 276 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence 11223333334433221 21 234577777777777665543332100 00000001111111 1
Q ss_pred cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEe
Q 018860 143 RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWD 214 (349)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd 214 (349)
.....|-+++..-.++.+.+++-.-+..-+||..+|..+..-... .+..+..- .+-+.+++.+|.+.++.
T Consensus 277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-daaGva~~-~~gf~vssg~G~~~~~s 346 (366)
T COG3490 277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-DAAGVAAA-KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-ccccceec-cCceEEecCCceEEecc
Confidence 112245667766677888888877678899999999876543322 11222222 23455666677777664
No 389
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.58 E-value=0.26 Score=45.25 Aligned_cols=141 Identities=12% Similarity=0.125 Sum_probs=90.6
Q ss_pred cCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCc--------EEEEecCCeEEEEecCCce-eeEE--
Q 018860 155 HSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGR--------YITTADGSTVKFWDANHFG-LVKS-- 223 (349)
Q Consensus 155 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~d~~i~iwd~~~~~-~~~~-- 223 (349)
.+...++..++....+.-.|+..|+.+.....+..+ -+.+.|+.+ .|++-++..|.-.|.+... .+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 344455666777778888999999999888877666 677777542 3455445555555665322 1111
Q ss_pred ---EcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecC
Q 018860 224 ---YNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
+.....+.+..- ....++++|+..|.||+||--.-.....+.+....|-.+..+.+|+++++.+ ...|.+-++
T Consensus 556 sKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~ 631 (776)
T COG5167 556 SKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDV 631 (776)
T ss_pred ehhcccccccccccc--ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEec
Confidence 111112222221 2367899999999999999655444455677778899999999999876544 334555555
No 390
>PHA03098 kelch-like protein; Provisional
Probab=95.50 E-value=1 Score=43.11 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=66.0
Q ss_pred CCeEEEEeeCC-----CeEEEEECCCCceEEeecCCCC--eeEEEEcCCCcE-EEEec--C----CeEEEEecCCceeeE
Q 018860 157 DQTILSTCTDM-----GGVRLWDVRSGEIVQTLETKSP--VTSAEVSQDGRY-ITTAD--G----STVKFWDANHFGLVK 222 (349)
Q Consensus 157 ~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~-l~~~~--d----~~i~iwd~~~~~~~~ 222 (349)
++.+++.|+.+ ..+..||+.++++...-....+ -.++... ++++ +.++. + +.+..||+.+..-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 34555555433 3588899988776532221111 1122222 3444 44442 1 357888887644322
Q ss_pred EEcCCCce--EEeeecCCCCCEEEEecCC--------CeEEEEeCCCCcEEEEecC-CCcceeEEEEccCCCeEEEecCC
Q 018860 223 SYNMPCTI--ESASLEPKYGNKFVAGGED--------MWVRFFDFHTGNEIACNKG-HHGPVHCVRFSPGGESYASGSED 291 (349)
Q Consensus 223 ~~~~~~~~--~~~~~~~~~~~~~~~~~~d--------~~i~v~d~~~~~~~~~~~~-h~~~i~~l~~sp~~~~l~sgs~D 291 (349)
.-..+... .++.. .++..++.||.+ ..+.+||..+.+-...-.. ....-.+++ ..++..++.|+.+
T Consensus 421 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~ 497 (534)
T PHA03098 421 GSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDK 497 (534)
T ss_pred cCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCc
Confidence 22222111 11222 135666777643 2388899877654322110 111111122 2266666777765
Q ss_pred -----CCEEEecCC
Q 018860 292 -----GTIRIWQTG 300 (349)
Q Consensus 292 -----g~v~vW~~~ 300 (349)
..+.++|+.
T Consensus 498 ~~~~~~~v~~yd~~ 511 (534)
T PHA03098 498 YEYYINEIEVYDDK 511 (534)
T ss_pred CCcccceeEEEeCC
Confidence 356666643
No 391
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.50 E-value=2.4 Score=40.49 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=37.5
Q ss_pred CeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEec
Q 018860 208 STVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNK 267 (349)
Q Consensus 208 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~ 267 (349)
+.|.-+|+.+++..-.+........-.+. ..+..++.++.||.++.+|.++|+.+-..+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~-t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLA-TAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceE-ECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 34666777777666555433221111111 135567778889999999999999986654
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=0.12 Score=51.43 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=65.4
Q ss_pred cEEEEEecCCCeEEEeCCCC-CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec-cCCe---EE
Q 018860 32 FFLISASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE-HKHI---VR 106 (349)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-~~~~---v~ 106 (349)
..++.|+.-|.+...|.... .+...=+.-.++|.+++|+.+|..++.|=.+|.|.+||...++..+.+. |..+ |-
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 35677777777666554321 1111112235789999999999999999999999999999988877664 3333 33
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEC
Q 018860 107 ACSFSEDTHLLLTGGMEKILRIFDL 131 (349)
Q Consensus 107 ~~~~s~~~~~l~s~~~d~~i~lwd~ 131 (349)
.+.+..++..++++..-|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 3444455567777766664 5654
No 393
>PHA03098 kelch-like protein; Provisional
Probab=95.31 E-value=1.4 Score=42.22 Aligned_cols=107 Identities=10% Similarity=-0.008 Sum_probs=50.7
Q ss_pred CCCeeEEeeCCC------eEEEEECCCCCEEEEec--cCC-eEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCCC
Q 018860 72 NALRAASASADF------SAKVWDALTGDVLHSFE--HKH-IVRACSFSEDTHLLLTGGME-----KILRIFDLNRPDAP 137 (349)
Q Consensus 72 ~~~~l~s~s~D~------~i~vWd~~~~~~~~~~~--~~~-~v~~~~~s~~~~~l~s~~~d-----~~i~lwd~~~~~~~ 137 (349)
++..++.||.++ .+..||..+.+-...-. .+. ....+ .-++.+.+.||.+ ..+..||+.+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 445566666543 46677876654322111 111 11122 2256777778765 34666777654321
Q ss_pred CceeccCCCCeEEEEEecCCCeEEEEeeC--C----CeEEEEECCCCceEE
Q 018860 138 PREVDRSPGSVRTVAWLHSDQTILSTCTD--M----GGVRLWDVRSGEIVQ 182 (349)
Q Consensus 138 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d----g~v~vwd~~~~~~~~ 182 (349)
.......+..-.+++. -++.+.+.|+. . +.+..||+.++++..
T Consensus 372 ~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred eCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 1110011111112221 23455554442 1 468899998877653
No 394
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.26 E-value=1.7 Score=40.99 Aligned_cols=151 Identities=15% Similarity=0.282 Sum_probs=93.6
Q ss_pred CceeeEEEeecCCCccEEEEEe---cCCCeEEEeCCCCCeEEEeecccCCeEEEEECCC----CCeeEEeeCCCeEEEEE
Q 018860 17 RPVVDLFYSPITPDGFFLISAS---KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTN----ALRAASASADFSAKVWD 89 (349)
Q Consensus 17 ~~v~~~~fs~~~~~~~~l~s~s---~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~s~D~~i~vWd 89 (349)
.||..++|- ||+.++-.. ..|.+++=| ...+..|+ -|..++|.|- ...|+...-.+.|.||.
T Consensus 20 HPvhGlaWT----DGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT----DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec----CCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 478899997 777765442 233333322 23455554 3777888763 43566677788999998
Q ss_pred CCC-----CCEEE--EeccC----CeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCC
Q 018860 90 ALT-----GDVLH--SFEHK----HIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQ 158 (349)
Q Consensus 90 ~~~-----~~~~~--~~~~~----~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (349)
+.. .+.+. +.+.. -.-+.+-|||....|+.=..+..-.++++.......+.-....+-|.+.+|.++++
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 742 22221 11221 12356789999888777655554456666544333332234567899999999888
Q ss_pred eEEEEeeCCCeEEEEECCCC
Q 018860 159 TILSTCTDMGGVRLWDVRSG 178 (349)
Q Consensus 159 ~~l~~~~~dg~v~vwd~~~~ 178 (349)
+++++.+..=.-++||-...
T Consensus 169 RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEEeCCeEEEEEecCchh
Confidence 88777665445689996543
No 395
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.20 E-value=0.57 Score=43.14 Aligned_cols=132 Identities=13% Similarity=0.145 Sum_probs=81.0
Q ss_pred CCeEEEeCCCCCeEEEeecccCCeEEEEECCC--------CCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEE--
Q 018860 41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDTN--------ALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSF-- 110 (349)
Q Consensus 41 ~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~--------~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~-- 110 (349)
..+.--|++.|+.+..++-|...| |.+.|. .+.|+--|.-+..||=--..|..+...+....++.-.|
T Consensus 490 ~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss 567 (776)
T COG5167 490 DKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSS 567 (776)
T ss_pred ccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccc
Confidence 344444677788888998888765 677664 23566666555444433223333333332222222222
Q ss_pred --cCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 018860 111 --SEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS 177 (349)
Q Consensus 111 --s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 177 (349)
....-+++.||..|-||+||-- +......+++....|.-+....++..+|+||- ..+.+-|++.
T Consensus 568 ~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~i 633 (776)
T COG5167 568 GMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVPI 633 (776)
T ss_pred cccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEeccc
Confidence 2234489999999999999942 22223334455567888888888889999985 4788888753
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.10 E-value=0.94 Score=43.63 Aligned_cols=107 Identities=18% Similarity=0.321 Sum_probs=69.1
Q ss_pred EEECCCCCeeEEeeCCCeEEEEECCCCCEEEE--eccCCeEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCC----CC-
Q 018860 67 CCLDTNALRAASASADFSAKVWDALTGDVLHS--FEHKHIVRACSF--SEDTHLLLTGGMEKILRIFDLNRPD----AP- 137 (349)
Q Consensus 67 ~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~--~~~~~~v~~~~~--s~~~~~l~s~~~d~~i~lwd~~~~~----~~- 137 (349)
+.-+.-++..+.-+....+.|||...+..... |...+.|..+.| .|+++.+++.|....|.+|.-...+ .+
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 33344455444555566799999998875443 344778999988 4789999999999999998642111 11
Q ss_pred ---Cce--ecc-CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECC
Q 018860 138 ---PRE--VDR-SPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVR 176 (349)
Q Consensus 138 ---~~~--~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~ 176 (349)
.+. +.. .+.+|.+..|.+++ .++++++ +++.|+|-.
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCC-eEEEEeC--CEEEEECCC
Confidence 111 122 23578888998654 4444443 588998753
No 397
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.04 E-value=2.7 Score=38.39 Aligned_cols=149 Identities=21% Similarity=0.308 Sum_probs=71.9
Q ss_pred CCccEEEEEecC------CCeEEEeCCCCCeEEEeecccCC---eEEEEECCCCCeeEEe--------------------
Q 018860 29 PDGFFLISASKD------SSPMLRNGETGDWIGTFEGHKGA---VWSCCLDTNALRAASA-------------------- 79 (349)
Q Consensus 29 ~~~~~l~s~s~d------~~i~iw~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~l~s~-------------------- 79 (349)
++|..++|+-.| |-+.+.|.++.+.+..++..... -....+.|....++|.
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 478788877433 23667777777777766543322 2334445555555554
Q ss_pred eCCCeEEEEECCCCCEEEEeccC---CeEEEEEEcC--CCCEEEEEe-CCCeE-EEEECCCCCCCC--------ce----
Q 018860 80 SADFSAKVWDALTGDVLHSFEHK---HIVRACSFSE--DTHLLLTGG-MEKIL-RIFDLNRPDAPP--------RE---- 140 (349)
Q Consensus 80 s~D~~i~vWd~~~~~~~~~~~~~---~~v~~~~~s~--~~~~l~s~~-~d~~i-~lwd~~~~~~~~--------~~---- 140 (349)
..-.++.+||..+.+.++++... .....+.|.+ +..+=+++. -..+| ++|.-....... ..
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 34578999999999999988744 2455677754 344433332 23333 333322111100 00
Q ss_pred --------eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 018860 141 --------VDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS 177 (349)
Q Consensus 141 --------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 177 (349)
+...+.-++.+..+.++..+.+++--.|.||.||+..
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 1111445788888888888888998899999999975
No 398
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=1.3 Score=36.07 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=88.2
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCCCCC-ceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCC
Q 018860 113 DTHLLLTGGM--EKILRIFDLNRPDAPP-REVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSP 189 (349)
Q Consensus 113 ~~~~l~s~~~--d~~i~lwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 189 (349)
+|.++.+.|. ...|+.||+.+.+... ..+. +..+..-....-+..+-.-...+|.-.++|.++-+++..+..+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~--~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA--PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC--CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc
Confidence 4566777664 4568999997544211 1111 111110000011222222334458888999988888777766554
Q ss_pred eeEEEEcCCCc-EEEEecCCeEEEEecCCceeeEEEcCCC---c---eEEeeecCCCCCEEEEecCCCeEEEEeCCCCcE
Q 018860 190 VTSAEVSQDGR-YITTADGSTVKFWDANHFGLVKSYNMPC---T---IESASLEPKYGNKFVAGGEDMWVRFFDFHTGNE 262 (349)
Q Consensus 190 v~~~~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~ 262 (349)
-..++ .|++ ++.+....++.+-|..++......+... + +..+-+- ++..++-.=.+..|...+..+|+.
T Consensus 133 GWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 133 GWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred ceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcE
Confidence 44443 2333 3334345678887877766554433211 1 1111111 233333333445566667777776
Q ss_pred EEEe------------cCCCcceeEEEEccCC-CeEEEe
Q 018860 263 IACN------------KGHHGPVHCVRFSPGG-ESYASG 288 (349)
Q Consensus 263 ~~~~------------~~h~~~i~~l~~sp~~-~~l~sg 288 (349)
+..+ ..|....+.+|+.|++ +++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6543 2345567889999987 455555
No 399
>PHA02790 Kelch-like protein; Provisional
Probab=94.76 E-value=1.7 Score=41.00 Aligned_cols=179 Identities=8% Similarity=-0.019 Sum_probs=81.5
Q ss_pred CCCeeEEeeCCC-----eEEEEECCCCCEEEE--eccCCeEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCCCCceec
Q 018860 72 NALRAASASADF-----SAKVWDALTGDVLHS--FEHKHIVRACSFSEDTHLLLTGGME--KILRIFDLNRPDAPPREVD 142 (349)
Q Consensus 72 ~~~~l~s~s~D~-----~i~vWd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~d--~~i~lwd~~~~~~~~~~~~ 142 (349)
++..++.||.++ ++..||..+..-... +..+..-.+++ .-++...+.||.+ ..+..||....... ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~--~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWV--NMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEE--ECC
Confidence 345566777543 466677766532221 11111111111 2366777777754 35677886543221 111
Q ss_pred cCCCCe--EEEEEecCCCeEEEEeeCC---CeEEEEECCCCceEEeecCCCC--eeEEEEcCCCcEEEEecCCeEEEEec
Q 018860 143 RSPGSV--RTVAWLHSDQTILSTCTDM---GGVRLWDVRSGEIVQTLETKSP--VTSAEVSQDGRYITTADGSTVKFWDA 215 (349)
Q Consensus 143 ~~~~~i--~~~~~~~~~~~~l~~~~~d---g~v~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~d~~i~iwd~ 215 (349)
.-+.+. .+++. -++.+.+.|+.+ ..+..||+++.++...-....+ -.++. .-++++.+.+ |.+.+||.
T Consensus 348 ~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G--G~~e~ydp 422 (480)
T PHA02790 348 SLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG--RNAEFYCE 422 (480)
T ss_pred CCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC--CceEEecC
Confidence 111111 12221 245555555433 3578899988877543222111 11222 2244444433 35677887
Q ss_pred CCceeeEEEcCCC--ceEEeeecCCCCCEEEEecCC-----CeEEEEeCCCC
Q 018860 216 NHFGLVKSYNMPC--TIESASLEPKYGNKFVAGGED-----MWVRFFDFHTG 260 (349)
Q Consensus 216 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d-----~~i~v~d~~~~ 260 (349)
.+..-...-..+. ....++.. +++.++.||.+ ..+.+||..+.
T Consensus 423 ~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 6543322222221 11222222 35677777754 34555665543
No 400
>PHA02790 Kelch-like protein; Provisional
Probab=94.70 E-value=2.6 Score=39.79 Aligned_cols=147 Identities=10% Similarity=0.031 Sum_probs=70.3
Q ss_pred CccEEEEEecCC-----CeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCC--CeEEEEECCCCCEEE--Eec
Q 018860 30 DGFFLISASKDS-----SPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASAD--FSAKVWDALTGDVLH--SFE 100 (349)
Q Consensus 30 ~~~~l~s~s~d~-----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D--~~i~vWd~~~~~~~~--~~~ 100 (349)
++...+.|+.++ ++..||..+++|...-.-............++...+.||.+ .++..||..+.+=.. .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 455667777653 35567877766643221111111111122456677777754 357778875543211 111
Q ss_pred cCCeEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 018860 101 HKHIVRACSFSEDTHLLLTGGMEK---ILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS 177 (349)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~s~~~d~---~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 177 (349)
.+..-.++ ..-+|...+.||.++ .+..||..+...........+..-.+++ . -++.+.+.| |.+.+||+++
T Consensus 351 ~~r~~~~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~-~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 351 KPRCNPAV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-V-FGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCcccEE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-E-ECCEEEEEC---CceEEecCCC
Confidence 11111111 223667777777553 4667887654321111001111111121 1 245565555 4578899988
Q ss_pred CceEE
Q 018860 178 GEIVQ 182 (349)
Q Consensus 178 ~~~~~ 182 (349)
+++..
T Consensus 425 ~~W~~ 429 (480)
T PHA02790 425 NTWTL 429 (480)
T ss_pred CcEeE
Confidence 87753
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=0.12 Score=51.37 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=55.9
Q ss_pred CCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEE---ECCCCCeeEEeeCCCeEEEEEC
Q 018860 15 HSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC---LDTNALRAASASADFSAKVWDA 90 (349)
Q Consensus 15 h~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~---~~~~~~~l~s~s~D~~i~vWd~ 90 (349)
-+++|.+++|+. +|.+++.|-.+|.|.+||..+++.++.+.-|..+...+- +..++..+.++..-|. +|+.
T Consensus 129 v~~~Vtsvafn~---dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQ---DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecC---CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 357999999996 899999999999999999999999888887776655443 3445556777777775 6764
No 402
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.62 E-value=5.5 Score=39.87 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=66.9
Q ss_pred cEEEEEecCCCeEEEeCCCCCeEEEeecccCC--------eEEEEEC----------------CCCCeeEEeeCCCeEEE
Q 018860 32 FFLISASKDSSPMLRNGETGDWIGTFEGHKGA--------VWSCCLD----------------TNALRAASASADFSAKV 87 (349)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~--------v~~~~~~----------------~~~~~l~s~s~D~~i~v 87 (349)
..|..++.++.+.-.|.++|+.+..++..... .+.+++- ..+.+++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 35667788888888898888887776543211 1122221 12347888889999999
Q ss_pred EECCCCCEEEEeccCCeEE-------------EEEEcC--CCCEEEEEeC----------CCeEEEEECCCCCCC
Q 018860 88 WDALTGDVLHSFEHKHIVR-------------ACSFSE--DTHLLLTGGM----------EKILRIFDLNRPDAP 137 (349)
Q Consensus 88 Wd~~~~~~~~~~~~~~~v~-------------~~~~s~--~~~~l~s~~~----------d~~i~lwd~~~~~~~ 137 (349)
.|..+|+..-.|.....|. ...-.| .+..++.|+. +|.|+-+|..+.+..
T Consensus 275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9999999887765433221 111122 2345666642 688999999876643
No 403
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.54 E-value=0.2 Score=29.38 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=26.9
Q ss_pred CCeEEEEEecCCC--eEEEEeeCCCeEEEEECCCC
Q 018860 146 GSVRTVAWLHSDQ--TILSTCTDMGGVRLWDVRSG 178 (349)
Q Consensus 146 ~~i~~~~~~~~~~--~~l~~~~~dg~v~vwd~~~~ 178 (349)
+.+.++.|+|... .+|+-+...|.|.++|+|++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3588999997665 67878888899999999963
No 404
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.48 E-value=2.8 Score=35.87 Aligned_cols=148 Identities=18% Similarity=0.121 Sum_probs=84.5
Q ss_pred ceeeEEEeecCCCccEEEEEe-cCCCeEEEeCCCCC-eEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEE-CCCCC
Q 018860 18 PVVDLFYSPITPDGFFLISAS-KDSSPMLRNGETGD-WIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWD-ALTGD 94 (349)
Q Consensus 18 ~v~~~~fs~~~~~~~~l~s~s-~d~~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd-~~~~~ 94 (349)
.+...+.|+ +|+.++... .++.-.+|-...+. ....+.+. .+..-.|++++...+....+...+++. ..++.
T Consensus 25 ~~~s~AvS~---dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP---DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC---CCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 456677775 787776655 23333444333332 22223433 566778999977666656677777774 33333
Q ss_pred EE-EEecc--C-CeEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCCCC-C-------ceeccCCCCeEEEEEecCCCe
Q 018860 95 VL-HSFEH--K-HIVRACSFSEDTHLLLTGG---MEKILRIFDLNRPDAP-P-------REVDRSPGSVRTVAWLHSDQT 159 (349)
Q Consensus 95 ~~-~~~~~--~-~~v~~~~~s~~~~~l~s~~---~d~~i~lwd~~~~~~~-~-------~~~~~~~~~i~~~~~~~~~~~ 159 (349)
.. ..... . ..|.++++||||..++... .++.+.+--+...... . .........+.++.|.+++..
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 22 22221 1 2799999999999887655 3566666654322211 1 111222457889999987766
Q ss_pred EEEEeeCCCeE
Q 018860 160 ILSTCTDMGGV 170 (349)
Q Consensus 160 ~l~~~~~dg~v 170 (349)
++++...++.+
T Consensus 180 ~V~~~~~~~~~ 190 (253)
T PF10647_consen 180 VVLGRSAGGPV 190 (253)
T ss_pred EEEeCCCCCce
Confidence 66655554433
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.40 E-value=3.2 Score=36.37 Aligned_cols=158 Identities=11% Similarity=0.112 Sum_probs=81.1
Q ss_pred CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCC-CEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 018860 52 DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTG-DVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFD 130 (349)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd 130 (349)
.+......-.+.+..+..++++++++.++.-...+-|+.... -..+.......|..+.|.|++.+.+.+ ..+.|+.=+
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 466556666677888888999999888887777788885432 234444456789999999998876644 788888776
Q ss_pred CC-CCCCCCc-eec--cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc-eEEeec---CCCCeeEEEEcCCCcEE
Q 018860 131 LN-RPDAPPR-EVD--RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGE-IVQTLE---TKSPVTSAEVSQDGRYI 202 (349)
Q Consensus 131 ~~-~~~~~~~-~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~---~~~~v~~~~~~~~~~~l 202 (349)
.. ......+ ... ...-.+..++|.+++. +.++++. |++.+ ....|+ ..+.-. ....+..+.|.++.+-+
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~-G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGGS-GTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF 290 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEEST-T-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeCC-ccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence 21 1111011 111 1122378899986654 4445544 54433 333343 222221 23456777777767777
Q ss_pred EEecCCeEEEE
Q 018860 203 TTADGSTVKFW 213 (349)
Q Consensus 203 ~~~~d~~i~iw 213 (349)
+.+.+|.|.-|
T Consensus 291 ~lG~~G~ll~~ 301 (302)
T PF14870_consen 291 VLGQDGVLLRY 301 (302)
T ss_dssp EE-STTEEEEE
T ss_pred EECCCcEEEEe
Confidence 77888876544
No 406
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.23 E-value=5.4 Score=38.20 Aligned_cols=187 Identities=16% Similarity=0.144 Sum_probs=100.4
Q ss_pred cEEEEEecCCCeEEEeCCCCCeEEEeeccc-CCeE---E-------EEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec
Q 018860 32 FFLISASKDSSPMLRNGETGDWIGTFEGHK-GAVW---S-------CCLDTNALRAASASADFSAKVWDALTGDVLHSFE 100 (349)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~-~~v~---~-------~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 100 (349)
..|..++.++.+.-.|..+++.+-.++... ..+. + +++ .+..++.++.|+.+.-.|..+|+.+-.+.
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 366677788888888999998776664321 1111 1 122 13356778889999999999998876554
Q ss_pred cCC-----eEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCCCCCce--ecc------------------------
Q 018860 101 HKH-----IVRACSFSEDTHLLLTGG------MEKILRIFDLNRPDAPPRE--VDR------------------------ 143 (349)
Q Consensus 101 ~~~-----~v~~~~~s~~~~~l~s~~------~d~~i~lwd~~~~~~~~~~--~~~------------------------ 143 (349)
... .+.+--.-.++ .++.+. .++.|..+|..+.+..-+. ...
T Consensus 148 ~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred cccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 211 11110011133 344443 2677888887654421110 000
Q ss_pred ----CCCCe-EEEEEecCCCeEEEEeeC----CC-----------eEEEEECCCCceEEeecC--C--------CCeeEE
Q 018860 144 ----SPGSV-RTVAWLHSDQTILSTCTD----MG-----------GVRLWDVRSGEIVQTLET--K--------SPVTSA 193 (349)
Q Consensus 144 ----~~~~i-~~~~~~~~~~~~l~~~~~----dg-----------~v~vwd~~~~~~~~~~~~--~--------~~v~~~ 193 (349)
..+.+ ..+++.+..+.++...+. ++ .|.--|+++|+..=.++. + .....+
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 00111 123444444444433322 11 567778888887544322 1 122233
Q ss_pred EEcCCCc---EEEE-ecCCeEEEEecCCceee
Q 018860 194 EVSQDGR---YITT-ADGSTVKFWDANHFGLV 221 (349)
Q Consensus 194 ~~~~~~~---~l~~-~~d~~i~iwd~~~~~~~ 221 (349)
.+..+|+ .++. ..+|.+.+.|..+++++
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 3434665 4433 45899999999888775
No 407
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.22 E-value=3.9 Score=36.54 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=38.1
Q ss_pred CCEEEEecCCCeEEEEeCCCCcEEE----EecCCCcceeEEEEccCCCeEEEecCCCCEE
Q 018860 240 GNKFVAGGEDMWVRFFDFHTGNEIA----CNKGHHGPVHCVRFSPGGESYASGSEDGTIR 295 (349)
Q Consensus 240 ~~~~~~~~~d~~i~v~d~~~~~~~~----~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~ 295 (349)
+.+|++.-..+.|....+..+..+. .+......+..+++.|||.+.++-+.+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4456666567788888886554322 1234555899999999999988888888874
No 408
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.21 E-value=5.1 Score=36.73 Aligned_cols=152 Identities=11% Similarity=0.091 Sum_probs=91.3
Q ss_pred eEEEeecCCCccEEEEEecCCCeEEEeC--CCCCeEEEee-cccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEE
Q 018860 21 DLFYSPITPDGFFLISASKDSSPMLRNG--ETGDWIGTFE-GHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLH 97 (349)
Q Consensus 21 ~~~fs~~~~~~~~l~s~s~d~~i~iw~~--~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~ 97 (349)
.+.|.. .++.|+ +...|-+.=|.. -+-...-++. ...++|.++.|++|.+.||.--.|.+|.+.+....+...
T Consensus 27 gvFfDD---aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 27 GVFFDD---ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ceeecc---CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 556652 233343 333444444432 2223333443 356799999999999999999999999999975444333
Q ss_pred Eecc-----CCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEee-CCCeEE
Q 018860 98 SFEH-----KHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCT-DMGGVR 171 (349)
Q Consensus 98 ~~~~-----~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~ 171 (349)
...| ...|....|+.. .-+|-.+..| +.+|.+.......+.+..+...|.-..|.+....++.+.+ ..+++.
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ln 180 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLN 180 (657)
T ss_pred HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccc
Confidence 2222 234777788765 4455444444 6788776555555666777777887788876665554443 333333
Q ss_pred EEECCCC
Q 018860 172 LWDVRSG 178 (349)
Q Consensus 172 vwd~~~~ 178 (349)
=+-++++
T Consensus 181 pf~~~~~ 187 (657)
T KOG2377|consen 181 PFHFRAG 187 (657)
T ss_pred cEEEeec
Confidence 3434433
No 409
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=5.1 Score=41.38 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=40.5
Q ss_pred CeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcE
Q 018860 189 PVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNE 262 (349)
Q Consensus 189 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~ 262 (349)
++.+..+......+.+..-+.+-+|+.......+.+..+.... ..++..++++-.|+.+..||...++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE-----SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC-----ccCCceEEEEEecCCEEeeecCCCce
Confidence 4445555555555555555566666654333333332222111 24578899999999999999988754
No 410
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.83 E-value=0.14 Score=50.17 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=52.6
Q ss_pred eeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEE-----------ECCCCCeeEEeeCCCeEEEE
Q 018860 20 VDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC-----------LDTNALRAASASADFSAKVW 88 (349)
Q Consensus 20 ~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~l~s~s~D~~i~vW 88 (349)
.-|.|-|.-++.-++..+-.++++++....+. ....+++|...+..++ ++|||+.++++..||.++.|
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra-~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRA-LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechH-HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 45566666666778888888888887654432 2245667888877665 48999999999999999999
Q ss_pred ECC
Q 018860 89 DAL 91 (349)
Q Consensus 89 d~~ 91 (349)
.+.
T Consensus 263 Qiy 265 (1283)
T KOG1916|consen 263 QIY 265 (1283)
T ss_pred eee
Confidence 864
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.70 E-value=12 Score=37.33 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=24.8
Q ss_pred CCeEEEEEEcCC---CCEEEEEeCCCeEEEEECCCCCC
Q 018860 102 KHIVRACSFSED---THLLLTGGMEKILRIFDLNRPDA 136 (349)
Q Consensus 102 ~~~v~~~~~s~~---~~~l~s~~~d~~i~lwd~~~~~~ 136 (349)
...|..+.|+|. +..|+.=..|+++|+||+..+..
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence 345777888875 46777777888888888865443
No 412
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.63 E-value=5.9 Score=33.82 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=104.5
Q ss_pred eEEEeeccc-CCeEEEEECCCCCeeEEeeCCC--eEEEEECCCCCEEEEeccCC--eEEEEEEcCCCCEEEEEeCCCeEE
Q 018860 53 WIGTFEGHK-GAVWSCCLDTNALRAASASADF--SAKVWDALTGDVLHSFEHKH--IVRACSFSEDTHLLLTGGMEKILR 127 (349)
Q Consensus 53 ~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D~--~i~vWd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~ 127 (349)
.++++.... .-...+.|..++..+-|.|.-| .|+.+|+.+|+......-+. .-..++...+ ++..-.-.++..-
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEE
Confidence 444544222 2346777877888888888766 79999999999876655332 2334444433 3333345788889
Q ss_pred EEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC---CC---CeeEEEEcCCCcE
Q 018860 128 IFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET---KS---PVTSAEVSQDGRY 201 (349)
Q Consensus 128 lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---~~---~v~~~~~~~~~~~ 201 (349)
+||..+-+... .+ ..+++-.-++ .++..++.+-++ ..+.++|..+.+....+.. .. .++.+.+- +|.+
T Consensus 114 ~yd~~tl~~~~-~~-~y~~EGWGLt--~dg~~Li~SDGS-~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I 187 (264)
T PF05096_consen 114 VYDPNTLKKIG-TF-PYPGEGWGLT--SDGKRLIMSDGS-SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKI 187 (264)
T ss_dssp EEETTTTEEEE-EE-E-SSS--EEE--ECSSCEEEE-SS-SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEE
T ss_pred EEccccceEEE-EE-ecCCcceEEE--cCCCEEEEECCc-cceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEE
Confidence 99986533211 11 2233444444 355666666554 6899999988877666542 22 24455554 4443
Q ss_pred EEEec-CCeEEEEecCCceeeEEEcC----------------CCceEEeeecCCCCCEEEEe
Q 018860 202 ITTAD-GSTVKFWDANHFGLVKSYNM----------------PCTIESASLEPKYGNKFVAG 246 (349)
Q Consensus 202 l~~~~-d~~i~iwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 246 (349)
.+=-. ...|...|..+++....+.. ..-...+++.|..++.+++|
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 33222 45677777777776665421 12356788888766666666
No 413
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.62 E-value=5 Score=32.98 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=64.2
Q ss_pred eeEEeeCCCeEEEEECCC--CCEEEEeccCCeEEEEEEcCCCCEEEEEeC------CCeEEEE---ECCC-CCCCCc--e
Q 018860 75 RAASASADFSAKVWDALT--GDVLHSFEHKHIVRACSFSEDTHLLLTGGM------EKILRIF---DLNR-PDAPPR--E 140 (349)
Q Consensus 75 ~l~s~s~D~~i~vWd~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------d~~i~lw---d~~~-~~~~~~--~ 140 (349)
.|+.+...+.|.+|++.+ .+.+..|..-+.|..+.++..|++|+|-=. ...+|+| +... ...+.+ .
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 344435566799999873 356777777788999999999999998421 1256664 3221 111110 0
Q ss_pred --------------------eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCc
Q 018860 141 --------------------VDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGE 179 (349)
Q Consensus 141 --------------------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 179 (349)
-.+...++.+++..|-.+.+++++. +.+.+|.+....
T Consensus 110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~--~~l~lf~l~~~~ 166 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG--NKLVLFTLKYQT 166 (215)
T ss_pred cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC--CEEEEEEEEEEE
Confidence 0112334566777777788877664 589999876443
No 414
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.50 E-value=1 Score=37.52 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=36.9
Q ss_pred CCeEEEEeeCCCeEEEEECCCCceEEee-------c--------CCCCeeEEEEcCCCcEEEEecCCeEEEEecC
Q 018860 157 DQTILSTCTDMGGVRLWDVRSGEIVQTL-------E--------TKSPVTSAEVSQDGRYITTADGSTVKFWDAN 216 (349)
Q Consensus 157 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~-------~--------~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~ 216 (349)
.+.++.+-+.+|.+++||+.+++.+..- . ....+..+.++.+|.-+++-.++....|+..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 3444555666799999999998765332 1 1234566666666665555445555666543
No 415
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.88 E-value=7.6 Score=33.41 Aligned_cols=208 Identities=15% Similarity=0.183 Sum_probs=107.9
Q ss_pred EEEEECCCCCEEEEec---cCCeEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCCCCCceeccCCCCeEEEEEecC
Q 018860 85 AKVWDALTGDVLHSFE---HKHIVRACSFSEDTHLLLTGGM-----EKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHS 156 (349)
Q Consensus 85 i~vWd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~-----d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 156 (349)
..++|..+.+...++. ....---=.|||||.+|...-. -|.|-+||.+..-...-++..|.-....+.|.++
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D 172 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD 172 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC
Confidence 3467777665443332 1111112248999999987543 3779999987544444456666555667777776
Q ss_pred CCeEEEEeeCCCeEE--------------------EEECCCCceEEeecC-----CCCeeEEEEcCCCcEEEEec-CC--
Q 018860 157 DQTILSTCTDMGGVR--------------------LWDVRSGEIVQTLET-----KSPVTSAEVSQDGRYITTAD-GS-- 208 (349)
Q Consensus 157 ~~~~l~~~~~dg~v~--------------------vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-d~-- 208 (349)
+..++... |.|+ +.|..+|..+.+... ...+..++.-+||..+.++. .|
T Consensus 173 Grtlvvan---GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~ 249 (366)
T COG3490 173 GRTLVVAN---GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR 249 (366)
T ss_pred CcEEEEeC---CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC
Confidence 65554432 3333 334444443322211 22455666666766655432 11
Q ss_pred ---eEEEEecCCceeeEEEcCCC--------ceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEE
Q 018860 209 ---TVKFWDANHFGLVKSYNMPC--------TIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVR 277 (349)
Q Consensus 209 ---~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~ 277 (349)
--.+=-...++++..+..+. .+-+++.+..++-..++.-.-+...+||..+|..+....- .....++
T Consensus 250 ~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva 327 (366)
T COG3490 250 NDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVA 327 (366)
T ss_pred ccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccce
Confidence 01111112233333333332 2345555544444444555667888999999988653210 0111222
Q ss_pred EccCCCeEEEecCCCCEEEecC
Q 018860 278 FSPGGESYASGSEDGTIRIWQT 299 (349)
Q Consensus 278 ~sp~~~~l~sgs~Dg~v~vW~~ 299 (349)
+...-++..|.+|.+.++.-
T Consensus 328 --~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 328 --AAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred --eccCceEEecCCceEEeccc
Confidence 23334566677888887743
No 416
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.51 E-value=1.2 Score=42.92 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=29.3
Q ss_pred CeEEEEECC----CCCeeEEeeCCCeEEEEECCCCCEEEEec
Q 018860 63 AVWSCCLDT----NALRAASASADFSAKVWDALTGDVLHSFE 100 (349)
Q Consensus 63 ~v~~~~~~~----~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 100 (349)
.+..++++. +..+|++.+.|+.+|+||+.+++++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 345566665 67799999999999999999999977653
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.46 E-value=1.7 Score=36.24 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=43.7
Q ss_pred ECCCCCeeEEeeCCCeEEEEECCCCCEEEEe---------------ccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 018860 69 LDTNALRAASASADFSAKVWDALTGDVLHSF---------------EHKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132 (349)
Q Consensus 69 ~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~ 132 (349)
+..++.+|+.-..+|.+++||+.+++.+..- .....|..+.++.+|.-+++-+ ++....|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4456778999999999999999988764432 1224567777777777666554 3556667654
No 418
>PRK10115 protease 2; Provisional
Probab=91.09 E-value=17 Score=36.06 Aligned_cols=190 Identities=11% Similarity=0.014 Sum_probs=95.8
Q ss_pred eEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCC-----CeEEEE
Q 018860 104 IVRACSFSEDTHLLLTGG-----MEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDM-----GGVRLW 173 (349)
Q Consensus 104 ~v~~~~~s~~~~~l~s~~-----~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~v~vw 173 (349)
.+..+.++|+|++|+-+. ..-.|++-|+.++......+... -..+.|.+++..++.+..++ ..|..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 466788999999887643 23447778886543222222211 14589998877777765543 368888
Q ss_pred ECCCC--ceEEeecCC-CCee-EEEEcCCCcEEEE--e--cCCeEEEEecC--CceeeEEEcCCCceEEeeecCCCCCEE
Q 018860 174 DVRSG--EIVQTLETK-SPVT-SAEVSQDGRYITT--A--DGSTVKFWDAN--HFGLVKSYNMPCTIESASLEPKYGNKF 243 (349)
Q Consensus 174 d~~~~--~~~~~~~~~-~~v~-~~~~~~~~~~l~~--~--~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++.++ +-...+... .... ....+.+++++.. . .++.+.+++.. ..........+.......... .+..+
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEE
Confidence 88877 322233321 2222 3344557766432 2 24678888842 222222222222211111121 12223
Q ss_pred EEec---CCCeEEEEeCCCCcEEEEecCC-C-cceeEEEEccCCCeEEEecCCCCEEEec
Q 018860 244 VAGG---EDMWVRFFDFHTGNEIACNKGH-H-GPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (349)
Q Consensus 244 ~~~~---~d~~i~v~d~~~~~~~~~~~~h-~-~~i~~l~~sp~~~~l~sgs~Dg~v~vW~ 298 (349)
+... ....|...++........+-.+ . ..|..+.++ .+.++++...+|.-+++-
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQ 342 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 3222 2334544555421222233333 3 367777776 334556777777766553
No 419
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.64 E-value=7.9 Score=37.82 Aligned_cols=65 Identities=11% Similarity=0.027 Sum_probs=38.9
Q ss_pred eEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 018860 64 VWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFD 130 (349)
Q Consensus 64 v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd 130 (349)
++++.-+|.++.++++..||+|++++.......+......+-..+-|...| ++++..|+.+--|.
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 566777788999999999999999997654332222211222223333333 44455555555554
No 420
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.10 E-value=1.9 Score=25.32 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=25.7
Q ss_pred CCeEEEEECCCCC---eeEEeeCCCeEEEEECCCC
Q 018860 62 GAVWSCCLDTNAL---RAASASADFSAKVWDALTG 93 (349)
Q Consensus 62 ~~v~~~~~~~~~~---~l~s~s~D~~i~vWd~~~~ 93 (349)
++|.+|.|+|+.. +|+-+-.-+.|-|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999997544 7888888889999999853
No 421
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.87 E-value=2.3 Score=24.38 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=24.0
Q ss_pred CCCeEEEEeeCCCeEEEEECCCCceEEeecCC
Q 018860 156 SDQTILSTCTDMGGVRLWDVRSGEIVQTLETK 187 (349)
Q Consensus 156 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 187 (349)
+++.++++...+++|.++|..+++.+..+...
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 45566767766789999999888887776653
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.86 E-value=1.7 Score=44.03 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=75.9
Q ss_pred CCeeEEEEcCCCcEEEE---ecCCeEEEEecCCceeeEE------------EcCCCceEEeeecCCCCCEEEEecCCCeE
Q 018860 188 SPVTSAEVSQDGRYITT---ADGSTVKFWDANHFGLVKS------------YNMPCTIESASLEPKYGNKFVAGGEDMWV 252 (349)
Q Consensus 188 ~~v~~~~~~~~~~~l~~---~~d~~i~iwd~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 252 (349)
.++..+.+.+|+.+..+ +.+-.|..||++....... +........+.|.|.....++.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35566677777665433 3345788999976543221 11122334566777666778888899999
Q ss_pred EEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 253 RFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 253 ~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
++..+........--......++++|+|.|+.|+.|-..|++.-|-..
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 998775433322222345678999999999999999999999988653
No 423
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.80 E-value=21 Score=34.87 Aligned_cols=162 Identities=8% Similarity=0.088 Sum_probs=87.8
Q ss_pred cCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCC--EEEEec--cCC-eEEE-----EEEcCCCCEEEEEeC-C---CeE
Q 018860 61 KGAVWSCCLDTNALRAASASADFSAKVWDALTGD--VLHSFE--HKH-IVRA-----CSFSEDTHLLLTGGM-E---KIL 126 (349)
Q Consensus 61 ~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~--~~~~~~--~~~-~v~~-----~~~s~~~~~l~s~~~-d---~~i 126 (349)
.+.|..+.|..++..++..-..|.|++||...+. .+.... +.. .+.. ........++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5668889999999999999999999999983221 111111 111 2222 111112344444433 2 346
Q ss_pred EEEECCCCCCCCceec---cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC-------CCeeEEEEc
Q 018860 127 RIFDLNRPDAPPREVD---RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK-------SPVTSAEVS 196 (349)
Q Consensus 127 ~lwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-------~~v~~~~~~ 196 (349)
|++.+........++. ..........|.-..+.+.-- .+++|.+|++.+-+..+++... ..+.++. .
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~ 285 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-P 285 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee-c
Confidence 7888732222222332 111222333344445554332 4579999999888777666432 1222222 2
Q ss_pred CCCcEEEEecCCeEEEEecCCceeeEEEc
Q 018860 197 QDGRYITTADGSTVKFWDANHFGLVKSYN 225 (349)
Q Consensus 197 ~~~~~l~~~~d~~i~iwd~~~~~~~~~~~ 225 (349)
|....+.-+.+.+|.+.|+.....+..+.
T Consensus 286 ~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 PSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 23334444556789999987665554443
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.57 E-value=20 Score=34.25 Aligned_cols=119 Identities=12% Similarity=0.111 Sum_probs=73.6
Q ss_pred cCCCceeeEEEeecCCCcc-EEEEEecCCCeEEEeCC-----CCCeEEEeec-ccC--Ce--EEEEECCCCCeeEEeeCC
Q 018860 14 GHSRPVVDLFYSPITPDGF-FLISASKDSSPMLRNGE-----TGDWIGTFEG-HKG--AV--WSCCLDTNALRAASASAD 82 (349)
Q Consensus 14 gh~~~v~~~~fs~~~~~~~-~l~s~s~d~~i~iw~~~-----~~~~~~~~~~-h~~--~v--~~~~~~~~~~~l~s~s~D 82 (349)
|..+.|..+.|+|....+. -|++.--...+.+|... .++++-+-.. ... +| ..|.|+|....|+.--.+
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 5566799999999754333 45556666889999743 3333322211 111 11 356788888777665444
Q ss_pred CeEEEEECCC--CCEEEEeccCCeEEEEEEcCCCCEEEEE-eCCCeEEEEECC
Q 018860 83 FSAKVWDALT--GDVLHSFEHKHIVRACSFSEDTHLLLTG-GMEKILRIFDLN 132 (349)
Q Consensus 83 ~~i~vWd~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~lwd~~ 132 (349)
..--+.++.. ......+...+.|.|.+|.+||+.|+.+ |..=.-.+||-.
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 4434566543 3445556777899999999999987765 333345788843
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.32 E-value=17 Score=33.06 Aligned_cols=140 Identities=12% Similarity=0.117 Sum_probs=72.1
Q ss_pred eEEEEECCCCCeeEEee-----------CCC-eEEEEECCC--CC--EEEEec-cCCeEEEEEEcCCCCEEEEEeCCCeE
Q 018860 64 VWSCCLDTNALRAASAS-----------ADF-SAKVWDALT--GD--VLHSFE-HKHIVRACSFSEDTHLLLTGGMEKIL 126 (349)
Q Consensus 64 v~~~~~~~~~~~l~s~s-----------~D~-~i~vWd~~~--~~--~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i 126 (349)
-..++|+++|..+++-. ..+ .|.+++-.. |. ....+. .-...+.+++.+++ +++ +......
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence 35678888888666542 223 677776433 22 223332 23346788999888 444 4444433
Q ss_pred EEEECCCCCCC---Cc-eec---c----CCCCeEEEEEecCCCeEEEEeeC------------------CCeEEEEECCC
Q 018860 127 RIFDLNRPDAP---PR-EVD---R----SPGSVRTVAWLHSDQTILSTCTD------------------MGGVRLWDVRS 177 (349)
Q Consensus 127 ~lwd~~~~~~~---~~-~~~---~----~~~~i~~~~~~~~~~~~l~~~~~------------------dg~v~vwd~~~ 177 (349)
++.|.+..... .+ .+. . +......+.|.|++..+++.++. .|.|..+|..+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 44454322111 11 111 1 12235677787765544544421 14456666655
Q ss_pred CceEEeecCCCCeeEEEEcCCCcEEEEe
Q 018860 178 GEIVQTLETKSPVTSAEVSQDGRYITTA 205 (349)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 205 (349)
++.............++|++++.++++-
T Consensus 174 ~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 174 GKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred CeEEEEecCcCCCccceECCCCCEEEEc
Confidence 4432211222334578899999887653
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.58 E-value=13 Score=31.03 Aligned_cols=52 Identities=19% Similarity=0.059 Sum_probs=41.0
Q ss_pred CCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEc-cCCCeEE-EecC
Q 018860 239 YGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFS-PGGESYA-SGSE 290 (349)
Q Consensus 239 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~s-p~~~~l~-sgs~ 290 (349)
.++.++++-+.++|..+|..+|+.+.+++--+..|+|+||- |+-..|+ |+..
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 47888888888999999999999999888778999999995 3333443 4443
No 427
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.29 E-value=33 Score=35.15 Aligned_cols=167 Identities=17% Similarity=0.234 Sum_probs=83.8
Q ss_pred CeEEEEECCCCCEEEEeccCC-----eEEEEEEcCCCC--EEEEEeC-----------CCeEEEEECCCCCCCCceeccC
Q 018860 83 FSAKVWDALTGDVLHSFEHKH-----IVRACSFSEDTH--LLLTGGM-----------EKILRIFDLNRPDAPPREVDRS 144 (349)
Q Consensus 83 ~~i~vWd~~~~~~~~~~~~~~-----~v~~~~~s~~~~--~l~s~~~-----------d~~i~lwd~~~~~~~~~~~~~~ 144 (349)
..|++.|..+++.+..+.+.. .+.++.|+.... ++++|.. +|.++.|++-..+...+.+...
T Consensus 853 s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 853 SSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred ceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 359999999998887776442 366677765333 3333321 2334555543322222222222
Q ss_pred --CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCC---CCeeEEEEcCCCcEEEEec-CCeEE--EEecC
Q 018860 145 --PGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETK---SPVTSAEVSQDGRYITTAD-GSTVK--FWDAN 216 (349)
Q Consensus 145 --~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~-d~~i~--iwd~~ 216 (349)
++.+.++ .|-.+.++++.+ ..+++||+...++++..+.+ ..+..+.+. +..++.++ ...+. .|+..
T Consensus 933 ~~~~~v~Ai--~~f~~~~LagvG--~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 933 EIPGPVGAI--CPFQGRVLAGVG--RFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred CCCccceEE--eccCCEEEEecc--cEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecC
Confidence 2334444 455666666554 58999999887776554432 234444433 33444443 22333 35544
Q ss_pred CceeeEEEcCCCc--eEEeeecCCCCCEEEEecCCCeEEEEeC
Q 018860 217 HFGLVKSYNMPCT--IESASLEPKYGNKFVAGGEDMWVRFFDF 257 (349)
Q Consensus 217 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~i~v~d~ 257 (349)
..+++....-+.+ +..+.+ -+...++.+..-|.+.+..+
T Consensus 1007 ~n~l~~fadD~~pR~Vt~~~~--lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1007 DNQLIVFADDPVPRHVTALEL--LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CCeEEEEeCCCccceeeEEEE--ecCCceeeccccCcEEEEEC
Confidence 4444333222211 222222 12445666655566655544
No 428
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.77 E-value=13 Score=36.56 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=70.0
Q ss_pred CCCeeEEeeCCCeEEEEECCC-------C----C---------EEEEeccCCeEEEEEEc--CCCCEEEEEeCCCeEEEE
Q 018860 72 NALRAASASADFSAKVWDALT-------G----D---------VLHSFEHKHIVRACSFS--EDTHLLLTGGMEKILRIF 129 (349)
Q Consensus 72 ~~~~l~s~s~D~~i~vWd~~~-------~----~---------~~~~~~~~~~v~~~~~s--~~~~~l~s~~~d~~i~lw 129 (349)
....|+.|..||.|-+|..+. . + +...+..+..+..++++ ...++||+++.-..|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 455889999999999996411 0 0 11222345678899998 788899999999999998
Q ss_pred ECCCCC--CCCceeccCCCCeEEEEEecCC----C-eEEEEeeCCCeEEEEEC
Q 018860 130 DLNRPD--APPREVDRSPGSVRTVAWLHSD----Q-TILSTCTDMGGVRLWDV 175 (349)
Q Consensus 130 d~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~-~~l~~~~~dg~v~vwd~ 175 (349)
-+...+ ........+...|-++.|.+.+ + ..+++++=.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765422 1111122355568889988754 2 25666666788888776
No 429
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.73 E-value=34 Score=34.75 Aligned_cols=225 Identities=13% Similarity=0.133 Sum_probs=112.2
Q ss_pred cCCeEEEEECCC--C----CeeEEeeCCCeEEEEE-CCCCCEEEEec-----cCCeEEEEEEcCCCCEEEEEeCCCeEEE
Q 018860 61 KGAVWSCCLDTN--A----LRAASASADFSAKVWD-ALTGDVLHSFE-----HKHIVRACSFSEDTHLLLTGGMEKILRI 128 (349)
Q Consensus 61 ~~~v~~~~~~~~--~----~~l~s~s~D~~i~vWd-~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~d~~i~l 128 (349)
...|.|+.++|- + +.++.|.++..+.+-- ......+.... -+..|-..+|-.|..+|.++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 356888888753 1 2678888777665554 33333333322 2234555666667889999999999987
Q ss_pred EECCCCCCCCce---eccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceE-EeecCCCCeeEEEEcCC--CcEE
Q 018860 129 FDLNRPDAPPRE---VDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIV-QTLETKSPVTSAEVSQD--GRYI 202 (349)
Q Consensus 129 wd~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-~~~~~~~~v~~~~~~~~--~~~l 202 (349)
|-++........ ..-...++.=-.|.......+.++++ +-..+|-- +++.+ ..+..+.--.-..|+.+ ...+
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sd-rP~viY~~-n~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSD-RPTVIYSS-NGKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCC-CCEEEEec-CCcEEEeccchHHhhhhcccccccCCceE
Confidence 766543221111 11112344444555566666666766 44555543 33332 22222111111122222 2346
Q ss_pred EEecCCeEEEEecCCcee--eEEEcCCCceEEeeecCCCCCEEEEe-----------cCCC---eEEEEeCCCCcEEEEe
Q 018860 203 TTADGSTVKFWDANHFGL--VKSYNMPCTIESASLEPKYGNKFVAG-----------GEDM---WVRFFDFHTGNEIACN 266 (349)
Q Consensus 203 ~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~d~---~i~v~d~~~~~~~~~~ 266 (349)
+.+.++.+++..+..-.. +++......+..+++.+. ...+.+. +... .++++|-++-+.+...
T Consensus 688 ~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~-sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 688 ASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQES-SLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred EEecCCceEEEEecchhhcceeeecCCCChhheEeccc-ceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 666677777776543221 233444444455555542 1222221 1122 3566666655544332
Q ss_pred cC-CC---cceeEEEEccC-CCeEEEe
Q 018860 267 KG-HH---GPVHCVRFSPG-GESYASG 288 (349)
Q Consensus 267 ~~-h~---~~i~~l~~sp~-~~~l~sg 288 (349)
+- .. -.|.++.|..| +.+++.|
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVG 793 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVG 793 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEE
Confidence 11 11 23455558777 5566655
No 430
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.52 E-value=16 Score=33.60 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=33.4
Q ss_pred EeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEec
Q 018860 56 TFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFE 100 (349)
Q Consensus 56 ~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~ 100 (349)
.+......+.+++.+|++++.|+...=|.|-++|+..+..++..+
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 334445557788888888887777777888888888887777665
No 431
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.23 E-value=20 Score=31.54 Aligned_cols=232 Identities=14% Similarity=0.053 Sum_probs=111.5
Q ss_pred ecCCCccEEEEEecCCCeEEEeCCC--CCeEEEeecccCCeEEEEECCCCCeeEEee-CCCeEEEEECCCCCE-------
Q 018860 26 PITPDGFFLISASKDSSPMLRNGET--GDWIGTFEGHKGAVWSCCLDTNALRAASAS-ADFSAKVWDALTGDV------- 95 (349)
Q Consensus 26 ~~~~~~~~l~s~s~d~~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~D~~i~vWd~~~~~~------- 95 (349)
|.+.++++|+-|+.+|-..+. ... .+..+.+ +...|.++.....-+.|++-+ ....++++++.....
T Consensus 8 ~~~~~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~ 84 (302)
T smart00036 8 PITCDGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGS 84 (302)
T ss_pred ccccCCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCC
Confidence 334444689999999987666 332 3444443 566899999888777666655 344599999733221
Q ss_pred ---------EEEeccCCeEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCceec-------cCCCCeEEEEEecC--
Q 018860 96 ---------LHSFEHKHIVRACSFSED-THLLLTGGMEKILRIFDLNRPDAPPREVD-------RSPGSVRTVAWLHS-- 156 (349)
Q Consensus 96 ---------~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~lwd~~~~~~~~~~~~-------~~~~~i~~~~~~~~-- 156 (349)
...+.+.......+.... ...++++....+|.++....+........ ..+.++..+..+..
T Consensus 85 ~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~ 164 (302)
T smart00036 85 ARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFE 164 (302)
T ss_pred ccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeeccccc
Confidence 123333332332222211 22344555567777765433311111111 11122222222221
Q ss_pred CCeEEEEeeCCCeEEEEECCC--CceEE----e-e-cCC-CCeeEEEEcCCCcEEEEecCCeEEEEecCCcee--eEEEc
Q 018860 157 DQTILSTCTDMGGVRLWDVRS--GEIVQ----T-L-ETK-SPVTSAEVSQDGRYITTADGSTVKFWDANHFGL--VKSYN 225 (349)
Q Consensus 157 ~~~~l~~~~~dg~v~vwd~~~--~~~~~----~-~-~~~-~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~--~~~~~ 225 (349)
...+.+++.. +...+.++.. ..... . . ... .++. +.-.+++.+|.+-++. ..+-|....+. ...+.
T Consensus 165 ~~~lcvG~~~-~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~-i~~l~~~e~Llc~~~~-~v~Vn~~G~~~~r~~~l~ 241 (302)
T smart00036 165 RPGICIGSDK-GGGDVVQFHESLVSKEDLSLPFLSEETSLKPIS-VVQVPRDEFLLCYDEF-GVFVNLYGKRRSRNPILH 241 (302)
T ss_pred ceEEEEEEcC-CCCeEEEEeecccccccccccccccccccCceE-EEEECCCeEEEEECcE-EEEEeCCCCccccceEEE
Confidence 2344444433 2344444422 11000 0 0 111 2333 3333455666665443 33444443111 11233
Q ss_pred CCCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEec
Q 018860 226 MPCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNK 267 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~ 267 (349)
.+..+.++++.. .++++- .++.|.++++.+++.++.+.
T Consensus 242 w~~~p~~~~~~~---pyll~~-~~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 242 WEFMPESFAYHS---PYLLAF-HDNGIEIRSIKTGELLQELA 279 (302)
T ss_pred cCCcccEEEEEC---CEEEEE-cCCcEEEEECCCCceEEEEe
Confidence 334445555543 344444 45669999999998877765
No 432
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.80 E-value=25 Score=32.28 Aligned_cols=144 Identities=10% Similarity=0.003 Sum_probs=78.0
Q ss_pred EEEEECCCCCeeEEeeCCCeEEEEECCCCC-EEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC----Cc
Q 018860 65 WSCCLDTNALRAASASADFSAKVWDALTGD-VLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAP----PR 139 (349)
Q Consensus 65 ~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~----~~ 139 (349)
..+...+++.+++.+..-...+-||..... ..........++++.+.+++.+++++ ..|.+. +........ ..
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~ 319 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFE 319 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccccee
Confidence 344566777666655544444445532111 22233344568899999999877765 455543 332222110 11
Q ss_pred eecc--CCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeec----CCCCeeEEEEcCCCcEEEEecCCeEEEE
Q 018860 140 EVDR--SPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLE----TKSPVTSAEVSQDGRYITTADGSTVKFW 213 (349)
Q Consensus 140 ~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~d~~i~iw 213 (349)
.... ....+.++.|.+ ++.++++|.. |.+.... ..|+.-.... ...+...+.|.++++.++.+.+|.|.-|
T Consensus 320 ~~~~~~~~~~l~~v~~~~-d~~~~a~G~~-G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 320 EADIKSRGFGILDVGYRS-KKEAWAAGGS-GILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ecccCCCCcceEEEEEcC-CCcEEEEECC-CcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 1111 122477788764 4555555544 7666653 3343322222 1345778888888888888888877554
No 433
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.61 E-value=21 Score=31.18 Aligned_cols=216 Identities=12% Similarity=0.084 Sum_probs=114.7
Q ss_pred eEEEEECCCCCeeEEeeCCCeEEEEECC------CC-CEEEEec------cCCeEEEEEEcCCCC------------EEE
Q 018860 64 VWSCCLDTNALRAASASADFSAKVWDAL------TG-DVLHSFE------HKHIVRACSFSEDTH------------LLL 118 (349)
Q Consensus 64 v~~~~~~~~~~~l~s~s~D~~i~vWd~~------~~-~~~~~~~------~~~~v~~~~~s~~~~------------~l~ 118 (349)
-|.++++|.+..-++...-+...+||.. .. ..+-++. .+...+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4788999988877888888899999986 12 2223332 112345555553222 356
Q ss_pred EEeCCCeEEEEECCCCCC---CC-ceeccC-CCCe-EEEEEe--cCCCeEEEEeeCCCeEEEEECCCCceEE--eecCC-
Q 018860 119 TGGMEKILRIFDLNRPDA---PP-REVDRS-PGSV-RTVAWL--HSDQTILSTCTDMGGVRLWDVRSGEIVQ--TLETK- 187 (349)
Q Consensus 119 s~~~d~~i~lwd~~~~~~---~~-~~~~~~-~~~i-~~~~~~--~~~~~~l~~~~~dg~v~vwd~~~~~~~~--~~~~~- 187 (349)
.++.||+|.-|.....-. .. ..+... .+.+ +-++.- ..+..+.++--..++|.|+|-.=.+... .+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 788999999998542222 11 112211 2333 223332 2345555555567899999864332210 11000
Q ss_pred -----CCeeEE--------EE---cCCCcE-EEEecCCeEEEEecCCceeeEEEcCCCc---eEEeeecC-----CCCCE
Q 018860 188 -----SPVTSA--------EV---SQDGRY-ITTADGSTVKFWDANHFGLVKSYNMPCT---IESASLEP-----KYGNK 242 (349)
Q Consensus 188 -----~~v~~~--------~~---~~~~~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~ 242 (349)
.+..-. .+ .++.+- +....-|.|.+||+... +++.+..... +-.++..| -.+..
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 111111 11 111111 12223367999998654 3443432221 12233222 22455
Q ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCC------cceeEEEEcc
Q 018860 243 FVAGGEDMWVRFFDFHTGNEIACNKGHH------GPVHCVRFSP 280 (349)
Q Consensus 243 ~~~~~~d~~i~v~d~~~~~~~~~~~~h~------~~i~~l~~sp 280 (349)
|+---.||+|..||..+++.+..+..-. ..+|.|+|-.
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 5555579999999999998877665433 3467788865
No 434
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.55 E-value=4.2 Score=23.26 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=25.0
Q ss_pred CCCCeeEE-eeCCCeEEEEECCCCCEEEEeccCCeEEEEE
Q 018860 71 TNALRAAS-ASADFSAKVWDALTGDVLHSFEHKHIVRACS 109 (349)
Q Consensus 71 ~~~~~l~s-~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~ 109 (349)
|++++|.. .-.+++|.++|..+++.+..+.-...-..++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~ 40 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA 40 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence 35555554 4468899999998888777765433333333
No 435
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.34 E-value=3.8 Score=23.16 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=19.8
Q ss_pred CCcceeEEEEccCCCeEE-EecCC--CCEEEe
Q 018860 269 HHGPVHCVRFSPGGESYA-SGSED--GTIRIW 297 (349)
Q Consensus 269 h~~~i~~l~~sp~~~~l~-sgs~D--g~v~vW 297 (349)
..+.-...+|||||+.|+ +...+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567789999999876 55555 666666
No 436
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.27 E-value=37 Score=33.61 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=60.1
Q ss_pred EEEEecCCeEEEEecCC-------c-------------eeeEEEcCCCceEEeeec-CCCCCEEEEecCCCeEEEEeCCC
Q 018860 201 YITTADGSTVKFWDANH-------F-------------GLVKSYNMPCTIESASLE-PKYGNKFVAGGEDMWVRFFDFHT 259 (349)
Q Consensus 201 ~l~~~~d~~i~iwd~~~-------~-------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~v~d~~~ 259 (349)
+++|.+||.|.+|.+.. . ++.-.+..+...-.++++ ....+++|+++....|.||-...
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 45677899999996521 1 011112223344456665 12356777777777888775543
Q ss_pred C--cEEE-EecCCCcceeEEEEccCC---C---eEEEecCCCCEEEecC
Q 018860 260 G--NEIA-CNKGHHGPVHCVRFSPGG---E---SYASGSEDGTIRIWQT 299 (349)
Q Consensus 260 ~--~~~~-~~~~h~~~i~~l~~sp~~---~---~l~sgs~Dg~v~vW~~ 299 (349)
. +... ....|..-|.+++|-++. . +|++++-.|.+.+|++
T Consensus 197 ~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 197 VDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2 1111 111255679999998754 2 7889999999888766
No 437
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.77 E-value=7 Score=40.00 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=64.5
Q ss_pred EEEEECCCC-CeeEEeeCCCeEEEEECCCCC-EEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC---Cc
Q 018860 65 WSCCLDTNA-LRAASASADFSAKVWDALTGD-VLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAP---PR 139 (349)
Q Consensus 65 ~~~~~~~~~-~~l~s~s~D~~i~vWd~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~---~~ 139 (349)
.++.|.|.- ...+.+..|+.|+|..+.... ....+.....+++++|+|-|..++.|-..|++.-|-....... ..
T Consensus 159 ~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~P 238 (1405)
T KOG3630|consen 159 LKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEP 238 (1405)
T ss_pred ccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCC
Confidence 455666542 235677889999998865432 2333556678899999999999999999999988876433110 00
Q ss_pred eeccCCCCeEEEEEecCCCeEEE
Q 018860 140 EVDRSPGSVRTVAWLHSDQTILS 162 (349)
Q Consensus 140 ~~~~~~~~i~~~~~~~~~~~~l~ 162 (349)
.... ...|.++.|......+++
T Consensus 239 p~~e-~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 239 PVEE-NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred CcCC-CcceeEEEEecceeEEEE
Confidence 1111 356889999876554443
No 438
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.70 E-value=27 Score=34.79 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=33.6
Q ss_pred ccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCC
Q 018860 13 HGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETG 51 (349)
Q Consensus 13 ~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~ 51 (349)
..+.-.|..+.|+|.+.++.+|+.=+.|+++|+||....
T Consensus 143 ~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 356678889999999988889999999999999998643
No 439
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.12 E-value=14 Score=27.88 Aligned_cols=95 Identities=12% Similarity=0.153 Sum_probs=56.9
Q ss_pred eeCCCeEEEEECCCC--------ceEEeecCCCCeeEEEEc---C--CCcEEEEecCCeEEEEecCCceeeEEEcCCCce
Q 018860 164 CTDMGGVRLWDVRSG--------EIVQTLETKSPVTSAEVS---Q--DGRYITTADGSTVKFWDANHFGLVKSYNMPCTI 230 (349)
Q Consensus 164 ~~~dg~v~vwd~~~~--------~~~~~~~~~~~v~~~~~~---~--~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 230 (349)
++.-|+|.|.++... ..+..+..+..+++++-- | +...|..+....+..||+.....+-....+..+
T Consensus 16 aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~~DGv 95 (136)
T PF14781_consen 16 ATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEVPDGV 95 (136)
T ss_pred EecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhCccce
Confidence 334488999987633 234556666677776533 2 235677777888999999877655444555555
Q ss_pred EEeeec--CCCCCEEEEecCCCeEEEEeCC
Q 018860 231 ESASLE--PKYGNKFVAGGEDMWVRFFDFH 258 (349)
Q Consensus 231 ~~~~~~--~~~~~~~~~~~~d~~i~v~d~~ 258 (349)
.++.+- .....-++..+.+-.|.-||..
T Consensus 96 n~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 96 NAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred eEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 555442 1112335555555566666654
No 440
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=85.02 E-value=27 Score=34.00 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=64.4
Q ss_pred ccEEEEEecCCCeEEEeCCCCCeE--EEeecccCCeEEEEE--CCCCCeeEEeeCCCeEEEEECCC------C---CEEE
Q 018860 31 GFFLISASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCL--DTNALRAASASADFSAKVWDALT------G---DVLH 97 (349)
Q Consensus 31 ~~~l~s~s~d~~i~iw~~~~~~~~--~~~~~h~~~v~~~~~--~~~~~~l~s~s~D~~i~vWd~~~------~---~~~~ 97 (349)
++..+.-+.-..+.|||...+.+. .+| ...+.|..+.| .++++.+++.|....|.++...- + ..++
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence 333333333346889998876532 333 34677888887 57899999999999999996421 1 1233
Q ss_pred Eec---c-CCeEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 018860 98 SFE---H-KHIVRACSFSEDTHLLLTGGMEKILRIFD 130 (349)
Q Consensus 98 ~~~---~-~~~v~~~~~s~~~~~l~s~~~d~~i~lwd 130 (349)
.+. + +.+|....|.++|.+++.+|. .+.++|
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred EEEeecCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence 332 3 367889999999988776653 466666
No 441
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.98 E-value=41 Score=33.27 Aligned_cols=97 Identities=9% Similarity=0.157 Sum_probs=53.4
Q ss_pred cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCce
Q 018860 101 HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEI 180 (349)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 180 (349)
....+.++.-+|.+..++++..|+.|++|+...... .+.. ....+-..+.|.. .+ +.+...|+.+.-|. +.|-.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q-ski~-~~~~p~~nlv~tn-hg--l~~~tsdrr~la~~-~dgvv 86 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ-SKIC-EEAKPKENLVFTN-HG--LVTATSDRRALAWK-EDGVV 86 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccch-hhhh-hhcCCccceeeec-cc--eEEEeccchhheee-ccCcc
Confidence 345678888899999999999999999999743221 1110 0111122333432 23 33444456666674 44544
Q ss_pred EEeecCC----CCeeEEEEcCCCcEEE
Q 018860 181 VQTLETK----SPVTSAEVSQDGRYIT 203 (349)
Q Consensus 181 ~~~~~~~----~~v~~~~~~~~~~~l~ 203 (349)
.+.+..+ ....++.+.|..+-++
T Consensus 87 qqqfdyndqsekefss~~cdptaqnvv 113 (1636)
T KOG3616|consen 87 QQQFDYNDQSEKEFSSILCDPTAQNVV 113 (1636)
T ss_pred hhhccccchhhhhccceecCchhhhhh
Confidence 4444432 2344555555544443
No 442
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=84.98 E-value=30 Score=31.43 Aligned_cols=225 Identities=15% Similarity=0.098 Sum_probs=98.1
Q ss_pred CccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEE--CCCCCeeEEee----------------------CCCeE
Q 018860 30 DGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL--DTNALRAASAS----------------------ADFSA 85 (349)
Q Consensus 30 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~s----------------------~D~~i 85 (349)
+++.++=......++-.++++.+....+.-....+-...| +.++..++-.- -...|
T Consensus 91 ~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i 170 (386)
T PF14583_consen 91 DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRI 170 (386)
T ss_dssp TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEE
T ss_pred CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceE
Confidence 3344432333345555667776654455545554432333 44555443221 11223
Q ss_pred EEEECCCCCEEEEeccCCeEEEEEEcCCCC-EEEE---EeCCCe-EEEEECCCCCCCCceeccCCC-CeEE-EEEecCCC
Q 018860 86 KVWDALTGDVLHSFEHKHIVRACSFSEDTH-LLLT---GGMEKI-LRIFDLNRPDAPPREVDRSPG-SVRT-VAWLHSDQ 158 (349)
Q Consensus 86 ~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s---~~~d~~-i~lwd~~~~~~~~~~~~~~~~-~i~~-~~~~~~~~ 158 (349)
.--|+.+|+....+.....+.-+.|+|..- +|.- |-.|.. -|+|-++......+.+..+.. .+.. =-|.+++.
T Consensus 171 ~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 171 FTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp EEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred EEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Confidence 344566676666666666677788888543 3333 335553 488888765554444443322 2222 23566665
Q ss_pred eEEEEe----eCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEE-ecCC----------------eEEEEecCC
Q 018860 159 TILSTC----TDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITT-ADGS----------------TVKFWDANH 217 (349)
Q Consensus 159 ~~l~~~----~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~----------------~i~iwd~~~ 217 (349)
.+..-+ +.+..|.-.|+.+++....... ....-...++|++++++ +.|. -|.++++..
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~ 329 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA 329 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence 554422 2234677788888765332222 24566777899999876 2222 355677766
Q ss_pred ceeeEEEcCC-----------CceEEeeecCCCCCEEEEecCCCeEEEE
Q 018860 218 FGLVKSYNMP-----------CTIESASLEPKYGNKFVAGGEDMWVRFF 255 (349)
Q Consensus 218 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~d~~i~v~ 255 (349)
........+. ..-.-..|+|+....|+.....|...||
T Consensus 330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 5443222211 0123457777533334455556655554
No 443
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.85 E-value=0.14 Score=46.68 Aligned_cols=141 Identities=12% Similarity=0.179 Sum_probs=85.9
Q ss_pred EEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEE--EEecCCeEEEEecCCceeeE-EEcC
Q 018860 150 TVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYI--TTADGSTVKFWDANHFGLVK-SYNM 226 (349)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~d~~i~iwd~~~~~~~~-~~~~ 226 (349)
...|-+.+..++.+|.. ..+..||-. ++.............+++..++..+ .+...+.+.+||+++..-.. .+..
T Consensus 39 ~~~w~~e~~nlavaca~-tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACAN-TIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhh-hHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 44577777777666655 678888854 3333333334445566676666543 33457899999997532111 1111
Q ss_pred CCceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecCCCCE
Q 018860 227 PCTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTI 294 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~Dg~v 294 (349)
...-.-..|++. ...++.+...+.+++++..+.+..-....|...+.++++.+.+ +.+.++.|..+
T Consensus 117 ~~s~sll~wsKg-~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L 182 (615)
T KOG2247|consen 117 TSSKSLLAWSKG-TPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTL 182 (615)
T ss_pred cchHHHHhhccC-CccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHH
Confidence 111122344442 4456667788899999988777655544599999999998865 45556555543
No 444
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.12 E-value=24 Score=29.89 Aligned_cols=139 Identities=13% Similarity=0.248 Sum_probs=72.4
Q ss_pred eEEEeCCCCCeEEEeecccCCeEEE--EECCCCCeeEEeeC-C--CeEEEEECCC---C-CEE---EEeccCCeEEEEEE
Q 018860 43 PMLRNGETGDWIGTFEGHKGAVWSC--CLDTNALRAASASA-D--FSAKVWDALT---G-DVL---HSFEHKHIVRACSF 110 (349)
Q Consensus 43 i~iw~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~s~-D--~~i~vWd~~~---~-~~~---~~~~~~~~v~~~~~ 110 (349)
..+||..+++. +.+.-. ..++|. .+-+||+.|.+||. | ..+|+++..+ . +-. ..+..+..=.+...
T Consensus 48 s~~yD~~tn~~-rpl~v~-td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTF-RPLTVQ-TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcE-EeccCC-CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 35788877654 333322 223444 36789999998875 3 4588888654 1 111 11222222233445
Q ss_pred cCCCCEEEEEeCCC-eEEEEECCCCCCCCce---ec----cCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEE
Q 018860 111 SEDTHLLLTGGMEK-ILRIFDLNRPDAPPRE---VD----RSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQ 182 (349)
Q Consensus 111 s~~~~~l~s~~~d~-~i~lwd~~~~~~~~~~---~~----~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 182 (349)
-+||+.|+.||... +...|.-......... +. .......-..|.-+++.+|..+.. .-.+||..+.+.+.
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSIIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcEEEeCCCCeEEe
Confidence 67999998888663 3344443111110000 10 011112223445566777766665 34677988887766
Q ss_pred eec
Q 018860 183 TLE 185 (349)
Q Consensus 183 ~~~ 185 (349)
.++
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
Confidence 664
No 445
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=84.05 E-value=35 Score=31.50 Aligned_cols=190 Identities=13% Similarity=0.078 Sum_probs=80.8
Q ss_pred CCCeeEEee-CCCeEEEEECCCC----CEEEEecc----C--C--eEEEEEEcCCCCEEEEEe--CC----CeEEEEECC
Q 018860 72 NALRAASAS-ADFSAKVWDALTG----DVLHSFEH----K--H--IVRACSFSEDTHLLLTGG--ME----KILRIFDLN 132 (349)
Q Consensus 72 ~~~~l~s~s-~D~~i~vWd~~~~----~~~~~~~~----~--~--~v~~~~~s~~~~~l~s~~--~d----~~i~lwd~~ 132 (349)
+.++|+..+ ....|.|.|+.+. +..+.++. . + .-..+..-|+|+.++|+- .+ +-+-+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 445666666 6788999998743 34444541 1 1 223344457888888853 22 334455533
Q ss_pred CCCCCCc-eec-cCCCCeEEEEEecCCCeEEEEee-------------------CCCeEEEEECCCCceEEeecCCC---
Q 018860 133 RPDAPPR-EVD-RSPGSVRTVAWLHSDQTILSTCT-------------------DMGGVRLWDVRSGEIVQTLETKS--- 188 (349)
Q Consensus 133 ~~~~~~~-~~~-~~~~~i~~~~~~~~~~~~l~~~~-------------------~dg~v~vwd~~~~~~~~~~~~~~--- 188 (349)
+-+...+ ... .....-..+-|.|..+.++++.- --.++.+||+.+.+.++++....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 2110000 000 11122334555555554554321 11479999999999999987643
Q ss_pred CeeEEEEcCC--Cc--EEEEecCCeEEEE-ecCCc--eeeEEEcC--------------------CCceEEeeecCCCCC
Q 018860 189 PVTSAEVSQD--GR--YITTADGSTVKFW-DANHF--GLVKSYNM--------------------PCTIESASLEPKYGN 241 (349)
Q Consensus 189 ~v~~~~~~~~--~~--~l~~~~d~~i~iw-d~~~~--~~~~~~~~--------------------~~~~~~~~~~~~~~~ 241 (349)
....++|..+ .. ++.++-.++|-.| ....+ ...+.... +.-+..+.++.++.-
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3456666543 33 3444445555444 32221 11111111 222455666665333
Q ss_pred EEEEecCCCeEEEEeCCCCc
Q 018860 242 KFVAGGEDMWVRFFDFHTGN 261 (349)
Q Consensus 242 ~~~~~~~d~~i~v~d~~~~~ 261 (349)
+++++=.+|.||.||+....
T Consensus 326 LYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTT
T ss_pred EEEEcccCCcEEEEecCCCC
Confidence 44556679999999997643
No 446
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.47 E-value=29 Score=30.14 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=57.5
Q ss_pred CeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEee------CCCeEEEEECCCCCEEEEecc------CCeEEEEE
Q 018860 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASAS------ADFSAKVWDALTGDVLHSFEH------KHIVRACS 109 (349)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~D~~i~vWd~~~~~~~~~~~~------~~~v~~~~ 109 (349)
.+++||..+.+|..--.+=++.|..+.|..+.+.++.|. ....+-.||..+.. ...+.. +.+|..+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEEE
Confidence 488999988888766666677899999987777777775 46678889987653 323322 35677777
Q ss_pred EcC-CCC-EEEEEe-C--CCeEEEEE
Q 018860 110 FSE-DTH-LLLTGG-M--EKILRIFD 130 (349)
Q Consensus 110 ~s~-~~~-~l~s~~-~--d~~i~lwd 130 (349)
+.. ++. ..+.|. . +..+.-||
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEc
Confidence 632 443 333433 2 33455565
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.91 E-value=34 Score=31.67 Aligned_cols=99 Identities=14% Similarity=0.225 Sum_probs=58.9
Q ss_pred cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCcee---ccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCC
Q 018860 101 HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREV---DRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRS 177 (349)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 177 (349)
..++|.++.||+|.+.+|.--.+.+|.+++....+...... +.....|....|.++...-+. .+ ..+.+|-...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i--~~-~G~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFI--TD-QGIEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEE--ec-CCeEEEEEch
Confidence 45689999999999999999999999999874322222111 222334777788766443332 23 3466665432
Q ss_pred C-ceEEeecC-CCCeeEEEEcCCCcEE
Q 018860 178 G-EIVQTLET-KSPVTSAEVSQDGRYI 202 (349)
Q Consensus 178 ~-~~~~~~~~-~~~v~~~~~~~~~~~l 202 (349)
. +.+...+. ...|+-..|.++.+++
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceE
Confidence 2 12222222 2356667777776653
No 448
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=82.49 E-value=38 Score=30.72 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=51.8
Q ss_pred CeeEEEEcCCCcEEEEecCCeEEEEecCCc-----e---eeEEEcCC-----CceEEeeecCCCCCEEEEecCC------
Q 018860 189 PVTSAEVSQDGRYITTADGSTVKFWDANHF-----G---LVKSYNMP-----CTIESASLEPKYGNKFVAGGED------ 249 (349)
Q Consensus 189 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~-----~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d------ 249 (349)
....+.+.+++ ++++......++.|.... + ++..+... .....+.+.|+ +.++++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD-G~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD-GWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC-CCEEEecccCCCceec
Confidence 34678888888 555544444445455321 1 11222221 22446677763 6666554421
Q ss_pred -------------CeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEec
Q 018860 250 -------------MWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGS 289 (349)
Q Consensus 250 -------------~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs 289 (349)
+.|..++..+++....-.++ ...+.++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 44566665544432222333 3356899999998877644
No 449
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=82.24 E-value=42 Score=31.06 Aligned_cols=143 Identities=11% Similarity=0.135 Sum_probs=80.1
Q ss_pred CCeEEEEeeCCCeEEEEECCCCc-----eEEeecCCCCeeEEEEc---C--CCcEEEEecCCeEEEEecCC---------
Q 018860 157 DQTILSTCTDMGGVRLWDVRSGE-----IVQTLETKSPVTSAEVS---Q--DGRYITTADGSTVKFWDANH--------- 217 (349)
Q Consensus 157 ~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~~~~v~~~~~~---~--~~~~l~~~~d~~i~iwd~~~--------- 217 (349)
+...++.|+-.|.+||+++..+. .+-..+...||..+..- + +...|+.=.-+.+.+|.+..
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 34455667777999999996543 22333445666665432 1 22334433455677776621
Q ss_pred -cee--eEEEcCCCceEEee---ecCCC-CCEEEEecCCCeEEEEeCCCCcEEEEecCCCcceeEEEEccCCCeEEEecC
Q 018860 218 -FGL--VKSYNMPCTIESAS---LEPKY-GNKFVAGGEDMWVRFFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSE 290 (349)
Q Consensus 218 -~~~--~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~d~~i~v~d~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~sgs~ 290 (349)
..+ +..+..+.....++ |-... ..++..-+.||.+.+|+-+.--....+.+ .--...++|.|.-+.|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 111 11222222222222 22222 35667779999999998654332233332 111234688888888999999
Q ss_pred CCCEEEecCC
Q 018860 291 DGTIRIWQTG 300 (349)
Q Consensus 291 Dg~v~vW~~~ 300 (349)
+..|.-|+..
T Consensus 195 s~~l~~Yky~ 204 (418)
T PF14727_consen 195 SWTLECYKYQ 204 (418)
T ss_pred ceeEEEecHH
Confidence 9888888754
No 450
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.14 E-value=30 Score=29.32 Aligned_cols=138 Identities=18% Similarity=0.198 Sum_probs=72.0
Q ss_pred EEEECCCCCEEEEe-ccCCeEEEEEEcCCCCEEEEEeC-C--CeEEEEECCC-CCCCC-ceec---cCCCCeEEEEEecC
Q 018860 86 KVWDALTGDVLHSF-EHKHIVRACSFSEDTHLLLTGGM-E--KILRIFDLNR-PDAPP-REVD---RSPGSVRTVAWLHS 156 (349)
Q Consensus 86 ~vWd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~-d--~~i~lwd~~~-~~~~~-~~~~---~~~~~i~~~~~~~~ 156 (349)
-+||+.+++....- ...-...+-++-+||++|.+||. + ..+|+++... ..... .+.. ...--.-+..-.++
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 47888876543221 12223444557789999999874 2 4588888643 11111 1100 01111222333556
Q ss_pred CCeEEEEeeCCCeEEEEECCCC--ceEE--eecC---C---CCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEE
Q 018860 157 DQTILSTCTDMGGVRLWDVRSG--EIVQ--TLET---K---SPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSY 224 (349)
Q Consensus 157 ~~~~l~~~~~dg~v~vwd~~~~--~~~~--~~~~---~---~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~ 224 (349)
+..++++|....+..+|..+.. .... .+.. . .-.--+.+.|+|+++..+..+ -.|||..+...++.+
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEeeC
Confidence 6666666666556777776321 1111 1111 1 112245678999988766544 446688777655544
No 451
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.13 E-value=44 Score=32.94 Aligned_cols=175 Identities=14% Similarity=0.185 Sum_probs=81.3
Q ss_pred eCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEE-ee--c-CCCCeeEEEEc
Q 018860 121 GMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQ-TL--E-TKSPVTSAEVS 196 (349)
Q Consensus 121 ~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-~~--~-~~~~v~~~~~~ 196 (349)
+.-..|++|++.. ....+.+..|. .+..+.|+.. ..++ .-..+|++++|++-...... .. + ..+.|..+.+.
T Consensus 61 ~a~~~I~If~~sG-~lL~~~~w~~~-~lI~mgWs~~-eeLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 61 SARPYIRIFNISG-QLLGRILWKHG-ELIGMGWSDD-EELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFF 136 (829)
T ss_pred ccceeEEEEeccc-cchHHHHhcCC-CeeeecccCC-ceEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEe
Confidence 4456688888742 33334444443 7788999743 3444 34566999999985322211 11 1 12335555555
Q ss_pred CCCcEEEEecCCeEEEEecCCceeeEEEcCCC----ceEEeeecCCCCCEEEEecC-CCeEEEEeCC--CCcEEEEecCC
Q 018860 197 QDGRYITTADGSTVKFWDANHFGLVKSYNMPC----TIESASLEPKYGNKFVAGGE-DMWVRFFDFH--TGNEIACNKGH 269 (349)
Q Consensus 197 ~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-d~~i~v~d~~--~~~~~~~~~~h 269 (349)
.+|-.+.+.++.-+.+-+.......+.-..|. ..+..++.|.....++..-. .--..++... ..+.......
T Consensus 137 ~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~- 215 (829)
T KOG2280|consen 137 HNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP- 215 (829)
T ss_pred cCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC-
Confidence 56655544444444444433221111101110 01222233321111111100 0000111111 1111111112
Q ss_pred CcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 270 ~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
.+.+..+..||+.++|+--..+|.|.+=+.+
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D 246 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSID 246 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecc
Confidence 3456778899999999988888888776543
No 452
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.97 E-value=27 Score=28.72 Aligned_cols=172 Identities=16% Similarity=0.102 Sum_probs=86.3
Q ss_pred CccEEEEEecCC--CeEEEeCCCCCeEEEeecccCCeEEEEECCCCCee-EEeeCCCeEEEEECCCCCEEEEeccCCeEE
Q 018860 30 DGFFLISASKDS--SPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRA-ASASADFSAKVWDALTGDVLHSFEHKHIVR 106 (349)
Q Consensus 30 ~~~~l~s~s~d~--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~ 106 (349)
+|+++.|.+.-| .|+.|+..+++.+.+-+-....+..=.+..-+.++ +-.-.||.--.+|..+.+++..+..++.=.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 577777777665 58899999888766554332222221121112222 223457777788888877777766554434
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCc---eeccC-CCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEE
Q 018860 107 ACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPR---EVDRS-PGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQ 182 (349)
Q Consensus 107 ~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~---~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 182 (349)
.++ .|+..|+.+....+++.-|..+-..... ...+. -..++.+.|. ++.+.+-.-....|-.-|+.+|+.+.
T Consensus 135 gLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 433 3454455554445555555432111111 01111 1123334443 33343333333455566777777766
Q ss_pred eecCC-------------CCeeEEEEcCCC-cEEEEe
Q 018860 183 TLETK-------------SPVTSAEVSQDG-RYITTA 205 (349)
Q Consensus 183 ~~~~~-------------~~v~~~~~~~~~-~~l~~~ 205 (349)
.++.. ...+.+++.|++ +++.++
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 55321 134556666665 444443
No 453
>PRK10115 protease 2; Provisional
Probab=81.89 E-value=58 Score=32.46 Aligned_cols=228 Identities=14% Similarity=0.092 Sum_probs=107.3
Q ss_pred CCCccEEEEEecC-C----CeEEEeCCCCCeE-EEeecccCCeEEEEECCCCCeeEEeeCC------CeEEEEECCCC--
Q 018860 28 TPDGFFLISASKD-S----SPMLRNGETGDWI-GTFEGHKGAVWSCCLDTNALRAASASAD------FSAKVWDALTG-- 93 (349)
Q Consensus 28 ~~~~~~l~s~s~d-~----~i~iw~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~D------~~i~vWd~~~~-- 93 (349)
+|||++|+-+... | .+++.+..+++.+ ..+.+- -..++|.+|++.|+-...+ ..|..+++.++
T Consensus 135 Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 135 TPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred CCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 4588877655322 3 3677788777632 222221 1458999888766554332 36888888887
Q ss_pred CEEEEecc-CCeEE-EEEEcCCCCEEEEEe---CCCeEEEEECCCCCCCCc-eeccCCCCeEEEEEecCCCeEEEEeeC-
Q 018860 94 DVLHSFEH-KHIVR-ACSFSEDTHLLLTGG---MEKILRIFDLNRPDAPPR-EVDRSPGSVRTVAWLHSDQTILSTCTD- 166 (349)
Q Consensus 94 ~~~~~~~~-~~~v~-~~~~s~~~~~l~s~~---~d~~i~lwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~- 166 (349)
+....+.. ..... ....+.++.+++..+ .+..+.+++......... .+....+....+. +.+..+.+....
T Consensus 212 ~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ly~~tn~~ 289 (686)
T PRK10115 212 QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--HYQHRFYLRSNRH 289 (686)
T ss_pred HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--eCCCEEEEEEcCC
Confidence 33333432 22222 333454777655433 345688888543222212 2222222222222 223333333222
Q ss_pred --CCeEEEEECC-CCceEEeecCC--CCeeEEEEcCCCcEEEEecCCe--EEEEecCCceeeEEEcC--CCceEEeeec-
Q 018860 167 --MGGVRLWDVR-SGEIVQTLETK--SPVTSAEVSQDGRYITTADGST--VKFWDANHFGLVKSYNM--PCTIESASLE- 236 (349)
Q Consensus 167 --dg~v~vwd~~-~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~d~~--i~iwd~~~~~~~~~~~~--~~~~~~~~~~- 236 (349)
...|...++. .++....+... ..+..+.+..+.-+++...++. +.++|..+.. +..+.. +.........
T Consensus 290 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 368 (686)
T PRK10115 290 GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTRE-VIGIAFDDPAYVTWIAYNP 368 (686)
T ss_pred CCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCc-eEEecCCCCceEeeecccC
Confidence 2234444554 23332333332 2466666664322233344554 4555554332 333322 2222222222
Q ss_pred -CCCCCEEEEec---CCCeEEEEeCCCCc
Q 018860 237 -PKYGNKFVAGG---EDMWVRFFDFHTGN 261 (349)
Q Consensus 237 -~~~~~~~~~~~---~d~~i~v~d~~~~~ 261 (349)
+..+..+++.+ .-..+..+|+.+++
T Consensus 369 ~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 369 EPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 22233444333 34678888887764
No 454
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=81.45 E-value=8.5 Score=35.34 Aligned_cols=163 Identities=11% Similarity=0.075 Sum_probs=87.7
Q ss_pred eecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEE-EEe-cc-CC----eEE-EEEEcCCCCEEEEEeCCCeEEE
Q 018860 57 FEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVL-HSF-EH-KH----IVR-ACSFSEDTHLLLTGGMEKILRI 128 (349)
Q Consensus 57 ~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~-~~~-~~-~~----~v~-~~~~s~~~~~l~s~~~d~~i~l 128 (349)
+..--..|..+-..||++.|-.-+. ..+.|+++.+.... +.+ .. ++ .|+ ++.+-..|.-++.+..||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 3333445566677899987665444 56778877654321 111 11 11 122 2222335566777888888754
Q ss_pred -EECCCCCCCC----ceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEE
Q 018860 129 -FDLNRPDAPP----REVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYIT 203 (349)
Q Consensus 129 -wd~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 203 (349)
||+.....+. +.+.-.+.++..+.- ....+.+.+-...|++.++-..+.+.+-.-..-.....+.++|++.++.
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~p-e~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLP-ETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeecc-ccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhe
Confidence 5665433321 122222233333221 1223345555566777766654444332111122455678999999988
Q ss_pred EecCCeEEEEecCCceee
Q 018860 204 TADGSTVKFWDANHFGLV 221 (349)
Q Consensus 204 ~~~d~~i~iwd~~~~~~~ 221 (349)
.-+.+.++++.+.+..+.
T Consensus 374 ~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 374 SEDQGKIRLAQLENRNPE 391 (733)
T ss_pred eecCCceEEEEecCCCCC
Confidence 888899999988765443
No 455
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=81.43 E-value=36 Score=30.35 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=55.1
Q ss_pred eeEEEEcCCCcEEEEecCCeEEEEecCCce--eeEEEc-----CCCceEEeeecCCC--CCEE-EEecCC--------Ce
Q 018860 190 VTSAEVSQDGRYITTADGSTVKFWDANHFG--LVKSYN-----MPCTIESASLEPKY--GNKF-VAGGED--------MW 251 (349)
Q Consensus 190 v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~--~~~~~~-----~~~~~~~~~~~~~~--~~~~-~~~~~d--------~~ 251 (349)
-..+++.|+++++++-..|.|++++..... .+.... ....+..++++|.. +.+| ++.+.. ..
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 367899999999888889999999933322 222221 12346788888732 2333 333321 24
Q ss_pred EEEEeCCCC-------cEE-EEecC---CCcceeEEEEccCCCeEEEecCCCC
Q 018860 252 VRFFDFHTG-------NEI-ACNKG---HHGPVHCVRFSPGGESYASGSEDGT 293 (349)
Q Consensus 252 i~v~d~~~~-------~~~-~~~~~---h~~~i~~l~~sp~~~~l~sgs~Dg~ 293 (349)
|..|....+ +.+ ..+.. ....-..|+|.|+|.+.++.+..+.
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 444544333 111 11111 1223467999999977666554443
No 456
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=81.08 E-value=24 Score=32.57 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=57.1
Q ss_pred eccCCCceeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCeEEEEE----CCC---------------
Q 018860 12 CHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL----DTN--------------- 72 (349)
Q Consensus 12 ~~gh~~~v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~----~~~--------------- 72 (349)
|.-....+.+|.-+| ++++.|....=|-|.++|..++..++.++|-++.- |+| ...
T Consensus 303 l~D~~R~~~~i~~sP---~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 303 LPDSKREGESICLSP---SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred eccCCceEEEEEECC---CCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCc
Confidence 334445567787776 77777776555788999999999999998866543 222 111
Q ss_pred -CCeeE-EeeCCCeEEEEECCCCCEEEEec
Q 018860 73 -ALRAA-SASADFSAKVWDALTGDVLHSFE 100 (349)
Q Consensus 73 -~~~l~-s~s~D~~i~vWd~~~~~~~~~~~ 100 (349)
..+|+ =+-.-|.|.||.+..|..+..+.
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 12333 46678999999998887666654
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.94 E-value=13 Score=38.73 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=30.0
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCCEEEecCCC
Q 018860 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGP 301 (349)
Q Consensus 268 ~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~ 301 (349)
.+..+|..++.......|.+=+..|+|..|+.+.
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5678999999988888899999999999999864
No 458
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=80.93 E-value=2.3 Score=42.20 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=70.8
Q ss_pred eccCCCceeeEEE--------eecCCCccEEEEEecCCCeEEEeC-----CCCCeEEEeeccc-CCeEEEEECCCC----
Q 018860 12 CHGHSRPVVDLFY--------SPITPDGFFLISASKDSSPMLRNG-----ETGDWIGTFEGHK-GAVWSCCLDTNA---- 73 (349)
Q Consensus 12 ~~gh~~~v~~~~f--------s~~~~~~~~l~s~s~d~~i~iw~~-----~~~~~~~~~~~h~-~~v~~~~~~~~~---- 73 (349)
+++|.-.+.+++| ...+|||+.++.++.||.++.|.+ ....+++.++.|. .+-.|.-++...
T Consensus 220 ~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v 299 (1283)
T KOG1916|consen 220 FRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVV 299 (1283)
T ss_pred HHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCC
Confidence 4678877776654 335679999999999999888853 2335677788887 444343343322
Q ss_pred -----CeeEEe-eCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCC------------EEEEEeCCCeEEEEE
Q 018860 74 -----LRAASA-SADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTH------------LLLTGGMEKILRIFD 130 (349)
Q Consensus 74 -----~~l~s~-s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~------------~l~s~~~d~~i~lwd 130 (349)
..++++ ....-+++|....-+|+..+ -...|..++ -+++. .+++-+.+++|++|.
T Consensus 300 ~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~-~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 300 SIGKWVLRITTTDVNREEKFWAEAPWQCLLDK-LIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred ccceeEEEEecccCCcceeEeeccchhhhhhh-cccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 234444 45667999987665555111 123445554 33333 233456678888885
No 459
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=80.62 E-value=35 Score=29.10 Aligned_cols=141 Identities=18% Similarity=0.103 Sum_probs=83.4
Q ss_pred CeEEEEECCCCCeeEEee---CCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCCCCC
Q 018860 63 AVWSCCLDTNALRAASAS---ADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFD-LNRPDAPP 138 (349)
Q Consensus 63 ~v~~~~~~~~~~~l~s~s---~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd-~~~~~~~~ 138 (349)
.+.+.++++++..++... ....+.++... ...........+..-.|.+++...+....+...+++. ........
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 577889999998776554 34445555443 2222222334667778999988777777666667774 22222222
Q ss_pred ceeccC--CCCeEEEEEecCCCeEEEEee--CCCeEEEEECC---CC--ce----EEee-cCCCCeeEEEEcCCCcEEEE
Q 018860 139 REVDRS--PGSVRTVAWLHSDQTILSTCT--DMGGVRLWDVR---SG--EI----VQTL-ETKSPVTSAEVSQDGRYITT 204 (349)
Q Consensus 139 ~~~~~~--~~~i~~~~~~~~~~~~l~~~~--~dg~v~vwd~~---~~--~~----~~~~-~~~~~v~~~~~~~~~~~l~~ 204 (349)
..+... .+.|.++.++|++..+++... ..+.|.+=-+. .+ .. .... .....+..+.|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 222211 127999999998888766552 23566665432 22 11 1111 11346889999999988765
Q ss_pred e
Q 018860 205 A 205 (349)
Q Consensus 205 ~ 205 (349)
.
T Consensus 183 ~ 183 (253)
T PF10647_consen 183 G 183 (253)
T ss_pred e
Confidence 4
No 460
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.37 E-value=8.2 Score=37.16 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=40.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCC---CCCc-----------eec----c-------CCCCeEEEEEec---CCCeEEEE
Q 018860 112 EDTHLLLTGGMEKILRIFDLNRPD---APPR-----------EVD----R-------SPGSVRTVAWLH---SDQTILST 163 (349)
Q Consensus 112 ~~~~~l~s~~~d~~i~lwd~~~~~---~~~~-----------~~~----~-------~~~~i~~~~~~~---~~~~~l~~ 163 (349)
++...++.+..||.+......... .... .+. . ......++.... .+..++.+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 366678888889988777765311 1000 000 0 112233344433 24556667
Q ss_pred eeCCCeEEEEECCCCceEEee
Q 018860 164 CTDMGGVRLWDVRSGEIVQTL 184 (349)
Q Consensus 164 ~~~dg~v~vwd~~~~~~~~~~ 184 (349)
.+.|+++|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 778899999999999996654
No 461
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=79.33 E-value=81 Score=32.53 Aligned_cols=127 Identities=19% Similarity=0.315 Sum_probs=72.5
Q ss_pred CeEEEEEC-CCCc---eEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeEEEcC---CCceEEeeecCCCC
Q 018860 168 GGVRLWDV-RSGE---IVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNM---PCTIESASLEPKYG 240 (349)
Q Consensus 168 g~v~vwd~-~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~ 240 (349)
|.++.|+. +.|+ .++..+...++. +..|...++.++-+..+++||+.+.++++.... +..+..+.+ ..
T Consensus 912 g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~ 986 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YG 986 (1205)
T ss_pred CceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cc
Confidence 44666664 3344 233333334443 456666688888889999999988776655433 333444443 35
Q ss_pred CEEEEecCCCeEEEEeCCC-CcEEEEec--CCCcceeEEEEccCCCeEEEecCCCCEEEecCC
Q 018860 241 NKFVAGGEDMWVRFFDFHT-GNEIACNK--GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 241 ~~~~~~~~d~~i~v~d~~~-~~~~~~~~--~h~~~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~ 300 (349)
..++.|..-..+.++..+. .+.+..+- .-..+|+++.+ -|...+|-+..=|.+.+-...
T Consensus 987 ~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 987 ARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred eEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECC
Confidence 5677766555555544332 23333332 22356766665 356677777777777776654
No 462
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.18 E-value=16 Score=29.14 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=24.8
Q ss_pred cceeEEEEccCC------CeEEEecCCCCEEEecCC
Q 018860 271 GPVHCVRFSPGG------ESYASGSEDGTIRIWQTG 300 (349)
Q Consensus 271 ~~i~~l~~sp~~------~~l~sgs~Dg~v~vW~~~ 300 (349)
..|.+++|||.| .+||.-..++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999954 368889999999999754
No 463
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.20 E-value=60 Score=30.41 Aligned_cols=100 Identities=12% Similarity=0.154 Sum_probs=57.1
Q ss_pred eeEEEEcCCCcEEEEec-CCeEEEEecCCceeeEEEc--------CCCceEEeeecCCC---C--CEE-EEec-------
Q 018860 190 VTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN--------MPCTIESASLEPKY---G--NKF-VAGG------- 247 (349)
Q Consensus 190 v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~---~--~~~-~~~~------- 247 (349)
-..+.|.||++++++-. .|.|++++..+........ ....+..++++|.. . +++ ++-+
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~ 111 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKE 111 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCC
Confidence 46789999999888876 5899998765432211111 12446788888865 2 233 3321
Q ss_pred --CCCeEEEEeCCCC-------cEE-EEe---cCCCcceeEEEEccCCCeEEEecCC
Q 018860 248 --EDMWVRFFDFHTG-------NEI-ACN---KGHHGPVHCVRFSPGGESYASGSED 291 (349)
Q Consensus 248 --~d~~i~v~d~~~~-------~~~-~~~---~~h~~~i~~l~~sp~~~~l~sgs~D 291 (349)
....|..|.+... +.+ ..+ ..|.+ ..|+|.|+|.+.++.+..
T Consensus 112 ~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 112 LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEECCC
Confidence 1345655655321 111 111 13443 578899999876655443
No 464
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=77.53 E-value=56 Score=29.71 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=11.6
Q ss_pred CeEEEEECCCCceEE
Q 018860 168 GGVRLWDVRSGEIVQ 182 (349)
Q Consensus 168 g~v~vwd~~~~~~~~ 182 (349)
..+.+||+.+.++..
T Consensus 189 ~~v~~YD~~t~~W~~ 203 (376)
T PRK14131 189 KEVLSYDPSTNQWKN 203 (376)
T ss_pred ceEEEEECCCCeeeE
Confidence 358899999887754
No 465
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=77.37 E-value=40 Score=27.87 Aligned_cols=49 Identities=12% Similarity=0.242 Sum_probs=31.4
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEE
Q 018860 115 HLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILST 163 (349)
Q Consensus 115 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 163 (349)
..|+.+.....|.+|++..........-..-+.+..+.++..+++++.-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEE
Confidence 3443335566799999985444433333344788899998887776654
No 466
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=77.11 E-value=67 Score=30.39 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=60.4
Q ss_pred EEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCCeE----EEEEEcCCCCEEEEEe--------------CC-----
Q 018860 67 CCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKHIV----RACSFSEDTHLLLTGG--------------ME----- 123 (349)
Q Consensus 67 ~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~s~~--------------~d----- 123 (349)
+.+-++|.+++..+ ..++..|.. |+.+.....+..- ..+..-|+|++|+.+. .|
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 55677887666544 778888875 5555544433211 3455667888777666 12
Q ss_pred ----CeEEEEECCCCCCCCce----------ecc---CC--CCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEee
Q 018860 124 ----KILRIFDLNRPDAPPRE----------VDR---SP--GSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTL 184 (349)
Q Consensus 124 ----~~i~lwd~~~~~~~~~~----------~~~---~~--~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 184 (349)
..+..||+...-.+.+. ... .. -.+.++.+.+.++.+++++-....|...|.++++..-.+
T Consensus 230 d~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 230 DPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred CCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 22345665322111111 000 00 247899999988888888766668899998888876655
Q ss_pred c
Q 018860 185 E 185 (349)
Q Consensus 185 ~ 185 (349)
.
T Consensus 310 g 310 (477)
T PF05935_consen 310 G 310 (477)
T ss_dssp S
T ss_pred C
Confidence 4
No 467
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.99 E-value=77 Score=33.12 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=24.2
Q ss_pred EEEEECCCCCeeEEeeCCCeEEEEECCC
Q 018860 65 WSCCLDTNALRAASASADFSAKVWDALT 92 (349)
Q Consensus 65 ~~~~~~~~~~~l~s~s~D~~i~vWd~~~ 92 (349)
..++|++....+|-+...|.|+++....
T Consensus 39 ~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 39 SALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred cceeeccccceEEEEEecccEEEecccc
Confidence 4579999999999999999999997643
No 468
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.51 E-value=58 Score=30.82 Aligned_cols=29 Identities=14% Similarity=0.397 Sum_probs=17.3
Q ss_pred EEEEEEcCCC---CEEEEEeCCCeEEEEECCC
Q 018860 105 VRACSFSEDT---HLLLTGGMEKILRIFDLNR 133 (349)
Q Consensus 105 v~~~~~s~~~---~~l~s~~~d~~i~lwd~~~ 133 (349)
+..++|+|+. ..+..-+.|.+||+||+..
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 4556666654 3444455677777777654
No 469
>PRK13684 Ycf48-like protein; Provisional
Probab=74.81 E-value=63 Score=28.90 Aligned_cols=150 Identities=13% Similarity=0.182 Sum_probs=80.0
Q ss_pred CCCeEEEEEecCCCeEEEEeeCCCeEEE-EECCCCceEEe-ecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceeeE
Q 018860 145 PGSVRTVAWLHSDQTILSTCTDMGGVRL-WDVRSGEIVQT-LETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVK 222 (349)
Q Consensus 145 ~~~i~~~~~~~~~~~~l~~~~~dg~v~v-wd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~ 222 (349)
.+.+..+.+.+. +.+++.+.. |.+.. +|-........ ......+..+.+.+++.+++.+..+.+++=+.+.+..-.
T Consensus 172 ~g~~~~i~~~~~-g~~v~~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPD-GKYVAVSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCC-CeEEEEeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 456778887654 455555543 65532 22221122221 122346788889999988877777776543233222111
Q ss_pred EEcCC-----CceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEec---CCCcceeEEEEccCCCeEEEecCCCCE
Q 018860 223 SYNMP-----CTIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACNK---GHHGPVHCVRFSPGGESYASGSEDGTI 294 (349)
Q Consensus 223 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~---~h~~~i~~l~~sp~~~~l~sgs~Dg~v 294 (349)
....+ ..+..+.+.+. + .+++++.+|.+.. ....++.-...+ .-....+.+.|..++..++ ++..|.|
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~-~-~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i 325 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTP-G-EIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL 325 (334)
T ss_pred cccCCccccccceeeEEEcCC-C-CEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence 11111 12445666652 3 4566667776643 334444333322 2223577788876665544 6778888
Q ss_pred EEecCC
Q 018860 295 RIWQTG 300 (349)
Q Consensus 295 ~vW~~~ 300 (349)
--|+-+
T Consensus 326 l~~~~~ 331 (334)
T PRK13684 326 LRYVGS 331 (334)
T ss_pred EEecCC
Confidence 887643
No 470
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=74.65 E-value=15 Score=25.60 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=27.8
Q ss_pred CCCeEEEEECCCCceEEeecCCCCeeEEEEcCCCcEEEEec
Q 018860 166 DMGGVRLWDVRSGEIVQTLETKSPVTSAEVSQDGRYITTAD 206 (349)
Q Consensus 166 ~dg~v~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 206 (349)
..|.+..||+.+++...-+..-.--+.+++++|+.++..++
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 34789999999987644444333457889999999876664
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.63 E-value=43 Score=35.17 Aligned_cols=137 Identities=15% Similarity=0.255 Sum_probs=81.8
Q ss_pred EecCCCeEEEeCCCCCeEEEeecccCCeEEEEE--------CCCCCeeEEeeCCCeEEEEECCCCCE---E------EEe
Q 018860 37 ASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL--------DTNALRAASASADFSAKVWDALTGDV---L------HSF 99 (349)
Q Consensus 37 ~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~--------~~~~~~l~s~s~D~~i~vWd~~~~~~---~------~~~ 99 (349)
.+.|+.+.+|+++++.-...+++-+..|..|.. -+.=++|+.-+.-..|.++-+.-.+. . ..+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 467899999999987767778877777777764 22223455555555566665422211 0 111
Q ss_pred c-cCCeEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--CC-----CC----------------ceec-cCCCCeEEEEEe
Q 018860 100 E-HKHIVRACSFSEDTHLLLTGGMEKILRIFDLNRP--DA-----PP----------------REVD-RSPGSVRTVAWL 154 (349)
Q Consensus 100 ~-~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~--~~-----~~----------------~~~~-~~~~~i~~~~~~ 154 (349)
. .+-.|+++....+|+.+++|- |+ .+|.+.-. .. .. ..+. .+..+|..++..
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 1 244688888888898777654 44 55654210 00 00 0111 345578888765
Q ss_pred cCCCeEEEEeeCCCeEEEEECCC
Q 018860 155 HSDQTILSTCTDMGGVRLWDVRS 177 (349)
Q Consensus 155 ~~~~~~l~~~~~dg~v~vwd~~~ 177 (349)
. ...++.+=+..|+|++||+..
T Consensus 252 ~-SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 N-SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred c-ccceeeeeccCceEEEEEccC
Confidence 3 344565666779999999976
No 472
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.90 E-value=8.6 Score=20.54 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=19.8
Q ss_pred CCEEEEecCCCeEEEEeCCCCcEE
Q 018860 240 GNKFVAGGEDMWVRFFDFHTGNEI 263 (349)
Q Consensus 240 ~~~~~~~~~d~~i~v~d~~~~~~~ 263 (349)
+..+++++.++.++.+|..+|+.+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEE
Confidence 346788889999999999888765
No 473
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.50 E-value=79 Score=29.98 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=21.7
Q ss_pred EEeeecCCC--CCEEEEecCCCeEEEEeCCCCcEE
Q 018860 231 ESASLEPKY--GNKFVAGGEDMWVRFFDFHTGNEI 263 (349)
Q Consensus 231 ~~~~~~~~~--~~~~~~~~~d~~i~v~d~~~~~~~ 263 (349)
..++|+|.. +..+..=..|++||+||+.....+
T Consensus 169 ~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 169 KQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 445666654 566777777888888887654443
No 474
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=72.05 E-value=1.2e+02 Score=30.78 Aligned_cols=66 Identities=26% Similarity=0.195 Sum_probs=44.6
Q ss_pred ceEEeeecCCCCCEEEEecCCCeEEEEeCCCCcEEEEe---------------cCCCc----ceeEEEEccCCCeEEEec
Q 018860 229 TIESASLEPKYGNKFVAGGEDMWVRFFDFHTGNEIACN---------------KGHHG----PVHCVRFSPGGESYASGS 289 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~---------------~~h~~----~i~~l~~sp~~~~l~sgs 289 (349)
.+.++.... .+..++.+-.||+|.++|-.+.+.+... .|... ++..++|||++..++.-.
T Consensus 261 ~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 261 RVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred eEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 344444332 3567888899999999998776543222 01111 344589999999999999
Q ss_pred CCCCEE
Q 018860 290 EDGTIR 295 (349)
Q Consensus 290 ~Dg~v~ 295 (349)
.||.++
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 999966
No 475
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=71.39 E-value=70 Score=27.93 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=38.2
Q ss_pred ceeEEEEccCCCeEEEecCCCCEEEecCCCCCCCcc-eeeeccCeeeeeEeChhhhhccccceeecc--cccchhh
Q 018860 272 PVHCVRFSPGGESYASGSEDGTIRIWQTGPVTNDDT-ETLTANGTIGKVKVTADEVSRKIEGFHIAD--EGKMKEK 344 (349)
Q Consensus 272 ~i~~l~~sp~~~~l~sgs~Dg~v~vW~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 344 (349)
....++++++|..+.+--..+.|..|++........ +.+. ...+...-..++.+.. +|.|+.-
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~----------~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILA----------QDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEE----------E-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeE----------EcCceeeccceeeeccccCceEEEE
Confidence 456788999998888888999999999875432221 1121 1122234446777777 7777653
No 476
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.03 E-value=12 Score=21.00 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=19.5
Q ss_pred EEEEecCCCeEEEEeCCCCcEEEE
Q 018860 242 KFVAGGEDMWVRFFDFHTGNEIAC 265 (349)
Q Consensus 242 ~~~~~~~d~~i~v~d~~~~~~~~~ 265 (349)
.++.++.++.++.+|..+|+.+=.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEe
Confidence 356668999999999999998643
No 477
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=69.83 E-value=67 Score=27.08 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=73.9
Q ss_pred eEEEEeeCCCeEEEEECC--CCceEEeec------CCCCeeEEEEcCCCcEEEEec-C---------CeEEEEecCCcee
Q 018860 159 TILSTCTDMGGVRLWDVR--SGEIVQTLE------TKSPVTSAEVSQDGRYITTAD-G---------STVKFWDANHFGL 220 (349)
Q Consensus 159 ~~l~~~~~dg~v~vwd~~--~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~-d---------~~i~iwd~~~~~~ 220 (349)
-+.++++..-.|--||-. ..+...++. .+...+...++|+|++..+.. + +.++.|-....-
T Consensus 72 ~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v- 150 (310)
T KOG4499|consen 72 EFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQV- 150 (310)
T ss_pred eEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCc-
Confidence 455566664556678843 334444431 134567778899999965431 1 234444433211
Q ss_pred eEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEe--CCCCcE-----EEEecC---CCc-ceeEEEEccCCCeEEEec
Q 018860 221 VKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFD--FHTGNE-----IACNKG---HHG-PVHCVRFSPGGESYASGS 289 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d--~~~~~~-----~~~~~~---h~~-~i~~l~~sp~~~~l~sgs 289 (349)
...+..-.-...++|+.+...+++.-+.+..|..|| +.+|.. +..++. ... .--.++....|.+.++.=
T Consensus 151 ~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ 230 (310)
T KOG4499|consen 151 ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF 230 (310)
T ss_pred eeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe
Confidence 111111122345677755444556678888997787 555543 222221 111 112344444566666666
Q ss_pred CCCCEEEecCCCC
Q 018860 290 EDGTIRIWQTGPV 302 (349)
Q Consensus 290 ~Dg~v~vW~~~~~ 302 (349)
..++|...|+..+
T Consensus 231 ng~~V~~~dp~tG 243 (310)
T KOG4499|consen 231 NGGTVQKVDPTTG 243 (310)
T ss_pred cCcEEEEECCCCC
Confidence 6666766665443
No 478
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=68.44 E-value=12 Score=26.06 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=29.4
Q ss_pred eEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEE
Q 018860 76 AASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTG 120 (349)
Q Consensus 76 l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 120 (349)
++.+..+|.+--||..+++....+..-...+.+++++|+..++.+
T Consensus 30 ~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 30 LLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred eecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 455666788888999888764444433456889999999977664
No 479
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=68.21 E-value=64 Score=29.98 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=65.3
Q ss_pred CccEEEEEecCCCeEEE-eCC-CC----CeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEEeccCC
Q 018860 30 DGFFLISASKDSSPMLR-NGE-TG----DWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHSFEHKH 103 (349)
Q Consensus 30 ~~~~l~s~s~d~~i~iw-~~~-~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~ 103 (349)
.|.-|+.++.||-+.-| |.. ++ ..++.++-...+|..+.-..+.+-+++-...|++.++.....+.+..-....
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~ 358 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ 358 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc
Confidence 35667888999988777 322 11 2334444333444444434445557777888888888755444443333334
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 018860 104 IVRACSFSEDTHLLLTGGMEKILRIFDLNRP 134 (349)
Q Consensus 104 ~v~~~~~s~~~~~l~s~~~d~~i~lwd~~~~ 134 (349)
...-+++||.++++++- +.+.|+++.+++.
T Consensus 359 ~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 359 APQLVAMSPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred CcceeeeCcccchheee-cCCceEEEEecCC
Confidence 56778999999998864 4567999998754
No 480
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=68.09 E-value=68 Score=28.21 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=49.3
Q ss_pred eeeEEEeecCCCccEEEEEecCCCeEEEeCCCCCeEEEeecccCCe-----EEEEECCCCCeeEEeeCCCeEEEEECC
Q 018860 19 VVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAV-----WSCCLDTNALRAASASADFSAKVWDAL 91 (349)
Q Consensus 19 v~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~s~D~~i~vWd~~ 91 (349)
+++|... .+|.||+|.-.-.+|.+.+..+++.+..+.|....= ...++-.+-+++-.+..++.|.|+|-.
T Consensus 146 iNsV~~~---~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDKD---DDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeeec---CCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 5566443 478999999888888888989999888887762211 113444555556566789999999974
No 481
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=68.02 E-value=85 Score=27.61 Aligned_cols=202 Identities=12% Similarity=0.208 Sum_probs=110.6
Q ss_pred eeEEEeecCCCccEEEEEecCCCeEEEeCC-------CCCeEEEeec-----ccCCeEEEEECCCC------------Ce
Q 018860 20 VDLFYSPITPDGFFLISASKDSSPMLRNGE-------TGDWIGTFEG-----HKGAVWSCCLDTNA------------LR 75 (349)
Q Consensus 20 ~~~~fs~~~~~~~~l~s~s~d~~i~iw~~~-------~~~~~~~~~~-----h~~~v~~~~~~~~~------------~~ 75 (349)
..|+|+| .+.+-++....++..+|+.. ...++-++.+ -....+.+.|+... ..
T Consensus 26 WGia~~p---~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 26 WGLSYRP---GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ceeEecC---CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 4788997 56677777777889999875 1233445442 11234555554221 23
Q ss_pred eEEeeCCCeEEEEECCCCCE-----EEEecc--CCeE-EEEEEcC--CCCEEEEEe-CCCeEEEEECCCCCCCC------
Q 018860 76 AASASADFSAKVWDALTGDV-----LHSFEH--KHIV-RACSFSE--DTHLLLTGG-MEKILRIFDLNRPDAPP------ 138 (349)
Q Consensus 76 l~s~s~D~~i~vWd~~~~~~-----~~~~~~--~~~v-~~~~~s~--~~~~l~s~~-~d~~i~lwd~~~~~~~~------ 138 (349)
++.+++||+|.-|+..-+.. ...+.. ...| ..+++.. .+++|..+. ..++|.+||-.-.....
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67889999999998543332 112221 2334 3466653 367777665 57889999853211100
Q ss_pred ceecc--CCCCeEEE------EEecCC--CeEEEEeeCCCeEEEEECCCCceEEeecCCCC---eeEEEEcC------CC
Q 018860 139 REVDR--SPGSVRTV------AWLHSD--QTILSTCTDMGGVRLWDVRSGEIVQTLETKSP---VTSAEVSQ------DG 199 (349)
Q Consensus 139 ~~~~~--~~~~i~~~------~~~~~~--~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~---v~~~~~~~------~~ 199 (349)
..+.. .+-.|..+ .|-..+ ..-=..+.--|.|-++|+ .|..++.+..... -..++..| .+
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 00000 01112211 111111 000011222378999997 4677777755332 23455544 45
Q ss_pred cEEEEe-cCCeEEEEecCCceeeEEEc
Q 018860 200 RYITTA-DGSTVKFWDANHFGLVKSYN 225 (349)
Q Consensus 200 ~~l~~~-~d~~i~iwd~~~~~~~~~~~ 225 (349)
.+|++- .||+|..||..+++.+-.+.
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeec
Confidence 677775 48999999998877665543
No 482
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=65.25 E-value=68 Score=25.46 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=25.3
Q ss_pred CCeEEEEEecCC-----CeEEEEeeCCCeEEEEECC
Q 018860 146 GSVRTVAWLHSD-----QTILSTCTDMGGVRLWDVR 176 (349)
Q Consensus 146 ~~i~~~~~~~~~-----~~~l~~~~~dg~v~vwd~~ 176 (349)
..+.+++|+|.+ ..+|+..+.++.|.+|...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378999999843 5788888888999999865
No 483
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.70 E-value=1.6e+02 Score=29.29 Aligned_cols=202 Identities=15% Similarity=0.196 Sum_probs=95.5
Q ss_pred CeEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEEEE--ec---cCCeEEEEEEcCCCCE
Q 018860 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDVLHS--FE---HKHIVRACSFSEDTHL 116 (349)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~~~--~~---~~~~v~~~~~s~~~~~ 116 (349)
.|+|++.. |..+..+--....+..+.|+.+.. |+.-..||++.|++.-.. .+.. .. ....|..+.+...|=.
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCceE
Confidence 47777754 555555444344777899998875 677789999999998543 2222 21 1223555555556655
Q ss_pred EEEEeCCCeEEEEECCCCCCCCceecc---CCCCeEEEEEecCC--CeEEEEeeCCCeEEEEECCCCc-eEEeec-CCCC
Q 018860 117 LLTGGMEKILRIFDLNRPDAPPREVDR---SPGSVRTVAWLHSD--QTILSTCTDMGGVRLWDVRSGE-IVQTLE-TKSP 189 (349)
Q Consensus 117 l~s~~~d~~i~lwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~~-~~~~~~-~~~~ 189 (349)
+.+.+. ..+.+-+...+. .+.+.. ......+-+..+++ ..+++.-...=...+.-..... ..+.+. .++.
T Consensus 142 vlt~~g-~v~~i~~~~~~~--~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 142 VLTVSG-QVILINGVEEPK--LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred EEecCC-cEEEEcCCCcch--hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCce
Confidence 554432 233333332211 111111 11111111111221 1122111100000111111111 111222 2356
Q ss_pred eeEEEEcCCCcEEEEe-cCCeEEEEecCCceeeEEEcCCCceEEeeecCCCCCEEEEecCCCeEEEEeC
Q 018860 190 VTSAEVSQDGRYITTA-DGSTVKFWDANHFGLVKSYNMPCTIESASLEPKYGNKFVAGGEDMWVRFFDF 257 (349)
Q Consensus 190 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~ 257 (349)
+..+.++|+.++|+-- ..|.|.+-+....+..-.+..+.. .+ ...++-+|.|..+..|..
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~------~~--p~qm~WcgndaVvl~~e~ 279 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH------DP--PKQMAWCGNDAVVLSWEV 279 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC------Cc--hHhceeecCCceEEEEee
Confidence 7788899999888764 467777766654433333332211 11 124666777766666753
No 484
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=62.09 E-value=0.95 Score=41.55 Aligned_cols=137 Identities=14% Similarity=0.153 Sum_probs=77.3
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCceeccCCCCeEEEEEecCCCeEEEEeeCCCeEEEEECCCCceEEeecC
Q 018860 107 ACSFSEDTHLLLTGGMEKILRIFDLNRPDAPPREVDRSPGSVRTVAWLHSDQTILSTCTDMGGVRLWDVRSGEIVQTLET 186 (349)
Q Consensus 107 ~~~~s~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 186 (349)
...|.|.+..++.++.+..+..||-.... ..-...++....++|.-..+.+++.+...+.+.+||+.+..- +.++.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~ 114 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLES 114 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce---ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhc
Confidence 34567766668888888888888843211 111122445566777766666666666779999999975432 22222
Q ss_pred --CCCeeEEEEcCCCcEEEEec-CCeEEEEecCCceeeEEEc-CCCceEEeeecCCCCCEEEEecCC
Q 018860 187 --KSPVTSAEVSQDGRYITTAD-GSTVKFWDANHFGLVKSYN-MPCTIESASLEPKYGNKFVAGGED 249 (349)
Q Consensus 187 --~~~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d 249 (349)
...-.-+.|++....+..+. .+.+.+++-++.+.+.... +..+....++.+ .++.+.++.|
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd 179 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL--EDYVILCDCD 179 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc--cceeeecCcH
Confidence 11112245666665555543 5788888876654433332 223344555554 2344444444
No 485
>PLN02153 epithiospecifier protein
Probab=61.32 E-value=1.2e+02 Score=27.03 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=10.3
Q ss_pred eEEEEECCCCceE
Q 018860 169 GVRLWDVRSGEIV 181 (349)
Q Consensus 169 ~v~vwd~~~~~~~ 181 (349)
.+.+||+++.+..
T Consensus 102 ~v~~yd~~t~~W~ 114 (341)
T PLN02153 102 DFYSYDTVKNEWT 114 (341)
T ss_pred cEEEEECCCCEEE
Confidence 5888999887764
No 486
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=60.29 E-value=1.2e+02 Score=26.73 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=26.2
Q ss_pred CeEEEEECCCCceEEee--cCCCCeeEEEEcCCCc-EEEEecCC----eEEEEecCCce
Q 018860 168 GGVRLWDVRSGEIVQTL--ETKSPVTSAEVSQDGR-YITTADGS----TVKFWDANHFG 219 (349)
Q Consensus 168 g~v~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~-~l~~~~d~----~i~iwd~~~~~ 219 (349)
..+..||+.+.++...- .............+++ ++.++.++ .+..||+.+..
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 46889999988765422 2111111122222344 44554432 35578877644
No 487
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=60.26 E-value=2e+02 Score=29.19 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=76.6
Q ss_pred eEEEEeeCCCeEEEEECCCCceEEeecCCCCee-------------EEEEcC---CCcEEEEec----------CCeEEE
Q 018860 159 TILSTCTDMGGVRLWDVRSGEIVQTLETKSPVT-------------SAEVSQ---DGRYITTAD----------GSTVKF 212 (349)
Q Consensus 159 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~~l~~~~----------d~~i~i 212 (349)
.++ .++.|+.+.-.|.++|+.+-.+..+..+. ...-.| ++.+++++. +|.|+-
T Consensus 262 rV~-~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RII-LPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEE-EecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 444 45556889999999998876553322110 001111 445555432 477999
Q ss_pred EecCCceeeEEEcCCC-------------------ceEEeeecCCCCCEEEEe-----------------cCCCeEEEEe
Q 018860 213 WDANHFGLVKSYNMPC-------------------TIESASLEPKYGNKFVAG-----------------GEDMWVRFFD 256 (349)
Q Consensus 213 wd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-----------------~~d~~i~v~d 256 (349)
+|.++++++-.+.... .-...++++..+..++-. -..+.|...|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 9999988876654210 001223333322222110 1235677778
Q ss_pred CCCCcEEEEec--CCCc-------ceeEEEEcc-CCC---eEEEecCCCCEEEecCCCCC
Q 018860 257 FHTGNEIACNK--GHHG-------PVHCVRFSP-GGE---SYASGSEDGTIRIWQTGPVT 303 (349)
Q Consensus 257 ~~~~~~~~~~~--~h~~-------~i~~l~~sp-~~~---~l~sgs~Dg~v~vW~~~~~~ 303 (349)
..+|+..=.++ .|.- ...=+.+.. +|+ .++.++.+|.+.+.|...+.
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 88887643222 1211 111122322 553 68899999999999876543
No 488
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=59.57 E-value=1.3e+02 Score=26.65 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCCCCCce-eccCCCCeEEEEEecCCCeEEEEeeCCC----eEEEEECCCCceEE
Q 018860 113 DTHLLLTGGME-----KILRIFDLNRPDAPPRE-VDRSPGSVRTVAWLHSDQTILSTCTDMG----GVRLWDVRSGEIVQ 182 (349)
Q Consensus 113 ~~~~l~s~~~d-----~~i~lwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~v~vwd~~~~~~~~ 182 (349)
++++.+.||.. ..+..||+.+....... +.... ......... ++.+.+.|+.++ .+.+||+++.+...
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~ 200 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQK 200 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence 55666666642 34677787654322111 11111 111111122 344555554432 35689998877643
No 489
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=59.04 E-value=14 Score=35.69 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=55.7
Q ss_pred eEEEeCCCCCeEEEeecccCCeEEEEECCCCCeeEEeeCCC-eEEEEECCCCCEEEEe------cc-----CCeEEEEEE
Q 018860 43 PMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADF-SAKVWDALTGDVLHSF------EH-----KHIVRACSF 110 (349)
Q Consensus 43 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~-~i~vWd~~~~~~~~~~------~~-----~~~v~~~~~ 110 (349)
+.+-|..+..-++.|+.|+.++..++|.+.+..+++++-.| .|.++.+..-.+.... -+ +..+..++|
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicf 376 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICF 376 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhh
Confidence 33445666677889999999999999999999999998655 3555554322211110 01 123456778
Q ss_pred cCCCCEEEEEeCCCe
Q 018860 111 SEDTHLLLTGGMEKI 125 (349)
Q Consensus 111 s~~~~~l~s~~~d~~ 125 (349)
+...+++..++.+|.
T Consensus 377 s~~s~~r~~gsc~Ge 391 (788)
T KOG2109|consen 377 SEVSTIRTAGSCEGE 391 (788)
T ss_pred hhhcceEeecccCCC
Confidence 888888888877664
No 490
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=56.60 E-value=24 Score=19.97 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=15.6
Q ss_pred CCEEEEecCCCeEEEEeCCC
Q 018860 240 GNKFVAGGEDMWVRFFDFHT 259 (349)
Q Consensus 240 ~~~~~~~~~d~~i~v~d~~~ 259 (349)
+..++.++.|+.++.+|..+
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 56888999999999999753
No 491
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=55.18 E-value=1.5e+02 Score=26.34 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=8.1
Q ss_pred CCCCEEEEEeCC
Q 018860 112 EDTHLLLTGGME 123 (349)
Q Consensus 112 ~~~~~l~s~~~d 123 (349)
.++++.+.||.+
T Consensus 117 ~~g~IYviGG~~ 128 (346)
T TIGR03547 117 HNGQAYFTGGVN 128 (346)
T ss_pred eCCEEEEEcCcC
Confidence 467777777754
No 492
>PLN02193 nitrile-specifier protein
Probab=53.98 E-value=2e+02 Score=27.19 Aligned_cols=92 Identities=12% Similarity=0.077 Sum_probs=45.5
Q ss_pred CeEEEEECCCCceEEeecC-----CCCeeEEEEcCCCcE-EEEecC----CeEEEEecCCceeeEEEcC---CCc--eEE
Q 018860 168 GGVRLWDVRSGEIVQTLET-----KSPVTSAEVSQDGRY-ITTADG----STVKFWDANHFGLVKSYNM---PCT--IES 232 (349)
Q Consensus 168 g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~-l~~~~d----~~i~iwd~~~~~~~~~~~~---~~~--~~~ 232 (349)
..+..||+.+.+....-.. ...-..+... ++++ +..+.+ ..+.+||+.+.+-.+.-.. +.. ...
T Consensus 294 ~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~ 372 (470)
T PLN02193 294 KTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFA 372 (470)
T ss_pred ceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeE
Confidence 3577889888766432110 0011122222 3444 444433 4588899877554332211 211 112
Q ss_pred eeecCCCCCEEEEecCC--------------CeEEEEeCCCCcE
Q 018860 233 ASLEPKYGNKFVAGGED--------------MWVRFFDFHTGNE 262 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~d--------------~~i~v~d~~~~~~ 262 (349)
++. -.++.++.|+.+ ..+.+||+.+.+-
T Consensus 373 ~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 373 SAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred EEE--ECCEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 222 235677777753 2578888877654
No 493
>PLN02193 nitrile-specifier protein
Probab=53.45 E-value=2e+02 Score=27.14 Aligned_cols=132 Identities=13% Similarity=0.071 Sum_probs=60.9
Q ss_pred CCeEEEEeeCC-----CeEEEEECCCCceEEeecC---CCC--eeEEEEcCCCcEEEEecC-----CeEEEEecCCceee
Q 018860 157 DQTILSTCTDM-----GGVRLWDVRSGEIVQTLET---KSP--VTSAEVSQDGRYITTADG-----STVKFWDANHFGLV 221 (349)
Q Consensus 157 ~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~~---~~~--v~~~~~~~~~~~l~~~~d-----~~i~iwd~~~~~~~ 221 (349)
++.+.+.++.+ +.+..+|+++.++...-.. ..+ ..++....+.-++.++.+ ..+..||+.+..-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 34454444432 4688999998876542221 111 122222222233444432 24667777654322
Q ss_pred EEEc---CCC-c-eEEeeecCCCCCEEEEecCC----CeEEEEeCCCCcEEEEecC----CCcceeEEEEccCCCeEEEe
Q 018860 222 KSYN---MPC-T-IESASLEPKYGNKFVAGGED----MWVRFFDFHTGNEIACNKG----HHGPVHCVRFSPGGESYASG 288 (349)
Q Consensus 222 ~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~d----~~i~v~d~~~~~~~~~~~~----h~~~i~~l~~sp~~~~l~sg 288 (349)
..-. .+. + -..++.. .++.++.++.+ ..+.+||+.+.+-...... ......++ ...++++++.|
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~G 384 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFG 384 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEEC
Confidence 1110 000 0 0111111 35677777755 4689999887654332110 01111122 22356677778
Q ss_pred cCC
Q 018860 289 SED 291 (349)
Q Consensus 289 s~D 291 (349)
+.+
T Consensus 385 G~~ 387 (470)
T PLN02193 385 GEI 387 (470)
T ss_pred Ccc
Confidence 754
No 494
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=51.25 E-value=2.8e+02 Score=28.11 Aligned_cols=100 Identities=12% Similarity=0.215 Sum_probs=50.8
Q ss_pred EEEEecCCCeEEEEee----CCCeEEEEECCC---CceEEeecCCCCeeEEEEcCCCcEEEEecCCeEEEEecCCceee-
Q 018860 150 TVAWLHSDQTILSTCT----DMGGVRLWDVRS---GEIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLV- 221 (349)
Q Consensus 150 ~~~~~~~~~~~l~~~~----~dg~v~vwd~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~- 221 (349)
.+.|-|++..+...++ +.-.|+++.... |..-........+...+|+-....++.+..+.+++|-..++.-.
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYL 330 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYL 330 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEE
Confidence 4778777665544332 223566665321 22111111112233444544444455566788999998876532
Q ss_pred -EEEcCCCceEEeeecCCCCCEEEEecCCC
Q 018860 222 -KSYNMPCTIESASLEPKYGNKFVAGGEDM 250 (349)
Q Consensus 222 -~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 250 (349)
...+. ..+.-+.|+|...+.+...+...
T Consensus 331 K~e~~i-p~~s~vkwhpe~~nTl~f~d~~~ 359 (1243)
T COG5290 331 KVERQI-PGISYVKWHPEEKNTLLFRDGER 359 (1243)
T ss_pred EEeecC-CCcceeeeccccCcEEEEecCCe
Confidence 22222 34556778876666555444443
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=49.06 E-value=1.8e+02 Score=25.33 Aligned_cols=90 Identities=14% Similarity=0.237 Sum_probs=52.3
Q ss_pred CeEEEEECCCCceEEeec-CCCCeeEEEEcCCCcEEEEec-------CCeEEEEecCCceeeEEE-----cCCCceEEee
Q 018860 168 GGVRLWDVRSGEIVQTLE-TKSPVTSAEVSQDGRYITTAD-------GSTVKFWDANHFGLVKSY-----NMPCTIESAS 234 (349)
Q Consensus 168 g~v~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-------d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~ 234 (349)
..|++||..+.++..--. ....|..+.|..+.++++++. ...+-.||..+..-...- ..+..+..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 468999988877654332 235689999887777766653 235778888765432211 1234555555
Q ss_pred ecCCCCCEEE-Eec---CCCeEEEEeC
Q 018860 235 LEPKYGNKFV-AGG---EDMWVRFFDF 257 (349)
Q Consensus 235 ~~~~~~~~~~-~~~---~d~~i~v~d~ 257 (349)
+...+...+. +|. .+..|..||=
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcC
Confidence 5444444444 433 2335666764
No 496
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=48.53 E-value=2.1e+02 Score=29.32 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=49.1
Q ss_pred CeEEEEECCCCCEEEE-eccCCeEEEEEEcCCCCEEEE-EeCCC-----eEEEEECCCCCCCCceeccCCCCeEEEEEec
Q 018860 83 FSAKVWDALTGDVLHS-FEHKHIVRACSFSEDTHLLLT-GGMEK-----ILRIFDLNRPDAPPREVDRSPGSVRTVAWLH 155 (349)
Q Consensus 83 ~~i~vWd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s-~~~d~-----~i~lwd~~~~~~~~~~~~~~~~~i~~~~~~~ 155 (349)
+.+.+=|......... +.+..+|..-+|||||+.|+= .+.++ .|.+-++.+.......+.-....|..-..+.
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e 408 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLE 408 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecC
Confidence 4777778776655555 677888999999999999886 45444 4777788765544333332233333333344
Q ss_pred CCCeEE
Q 018860 156 SDQTIL 161 (349)
Q Consensus 156 ~~~~~l 161 (349)
.++..|
T Consensus 409 ~gdt~i 414 (912)
T TIGR02171 409 NGDTVI 414 (912)
T ss_pred CCCeEE
Confidence 444433
No 497
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=47.97 E-value=2.3e+02 Score=26.30 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=44.1
Q ss_pred CCeeEEeeCCCeEEEEECCCCCEEEEeccCCeEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 018860 73 ALRAASASADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGMEKILRIFDLN 132 (349)
Q Consensus 73 ~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~lwd~~ 132 (349)
...|..-+.||.+.+++-+..-..+.+...-....+.|.+..+.+++++.+..+..|...
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 357888999999999997654434444432223456788888899999999999988863
No 498
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=47.72 E-value=2.5e+02 Score=26.49 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=35.5
Q ss_pred CeEEEEECCCCCeeEEeeCCCeEEEEECCCCCEE--EEec------cCCeEEEEEEcCCC
Q 018860 63 AVWSCCLDTNALRAASASADFSAKVWDALTGDVL--HSFE------HKHIVRACSFSEDT 114 (349)
Q Consensus 63 ~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~~--~~~~------~~~~v~~~~~s~~~ 114 (349)
.-+.++|.||+..|++--..|.|++++..++... ..+. .......++|+|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3478999999987776655799999986655322 1111 23457889999873
No 499
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.38 E-value=3.5e+02 Score=27.88 Aligned_cols=64 Identities=14% Similarity=-0.019 Sum_probs=36.2
Q ss_pred ccEEEEEecCCCeEEEeCCCCC---eEEE------ee--cccCCeEEEEECCCCCeeEEeeCCCeEEEEECCCCCE
Q 018860 31 GFFLISASKDSSPMLRNGETGD---WIGT------FE--GHKGAVWSCCLDTNALRAASASADFSAKVWDALTGDV 95 (349)
Q Consensus 31 ~~~l~s~s~d~~i~iw~~~~~~---~~~~------~~--~h~~~v~~~~~~~~~~~l~s~s~D~~i~vWd~~~~~~ 95 (349)
|.+|..|+.||.+..|...... .+.. +. -++.+|..+...+.-..++. -.|..|.+.++.+.+.
T Consensus 26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELEP 100 (877)
T ss_pred CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCcccc
Confidence 6689999999999999754321 1111 11 13456655554444333333 3356677777665544
No 500
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=46.10 E-value=43 Score=17.29 Aligned_cols=23 Identities=4% Similarity=0.226 Sum_probs=13.7
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEE
Q 018860 106 RACSFSEDTHLLLTGGMEKILRI 128 (349)
Q Consensus 106 ~~~~~s~~~~~l~s~~~d~~i~l 128 (349)
..+++.++|+.+++=.....|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 45666666666666555555544
Done!