Query 018861
Match_columns 349
No_of_seqs 133 out of 1353
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 9.4E-53 2E-57 406.0 25.2 325 24-348 1-333 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 1.8E-51 3.9E-56 401.8 25.9 285 24-348 5-308 (451)
3 PRK11412 putative uracil/xanth 100.0 1.1E-46 2.4E-51 372.3 26.7 279 35-348 8-303 (433)
4 PRK10720 uracil transporter; P 100.0 1.1E-44 2.4E-49 359.6 25.7 272 23-348 2-288 (428)
5 TIGR03616 RutG pyrimidine util 100.0 3.2E-44 6.9E-49 356.2 27.6 285 22-348 17-308 (429)
6 TIGR00801 ncs2 uracil-xanthine 100.0 3.6E-44 7.9E-49 355.2 26.2 277 31-348 1-297 (415)
7 PF00860 Xan_ur_permease: Perm 100.0 6.4E-45 1.4E-49 358.2 16.9 280 35-348 1-295 (389)
8 TIGR03173 pbuX xanthine permea 100.0 1.1E-42 2.3E-47 344.3 23.3 266 41-348 1-281 (406)
9 COG2252 Xanthine/uracil/vitami 100.0 3.5E-28 7.5E-33 236.7 20.4 281 20-347 4-309 (436)
10 TIGR00843 benE benzoate transp 99.9 5.5E-26 1.2E-30 220.6 23.1 255 36-343 22-277 (395)
11 PF03594 BenE: Benzoate membra 99.9 9E-25 1.9E-29 208.9 20.7 257 36-345 6-263 (378)
12 COG3135 BenE Uncharacterized p 99.9 1.2E-22 2.6E-27 190.5 18.3 255 35-345 20-278 (402)
13 COG0659 SUL1 Sulfate permease 99.8 6.3E-18 1.4E-22 172.5 21.7 254 34-346 21-306 (554)
14 PRK11660 putative transporter; 99.6 4.3E-14 9.3E-19 145.8 22.5 268 33-347 28-338 (568)
15 TIGR00815 sulP high affinity s 99.6 1.5E-13 3.2E-18 141.8 20.6 272 34-347 14-318 (563)
16 KOG0236 Sulfate/bicarbonate/ox 99.0 2.8E-08 6.1E-13 104.2 18.3 257 52-346 92-385 (665)
17 PF00916 Sulfate_transp: Sulfa 98.8 1.6E-09 3.4E-14 102.0 2.8 173 150-347 1-206 (280)
18 TIGR00834 ae anion exchange pr 97.2 0.034 7.3E-07 60.2 19.8 251 73-346 402-716 (900)
19 PF11840 DUF3360: Protein of u 97.0 0.035 7.7E-07 53.8 15.7 274 24-346 55-347 (492)
20 KOG1172 Na+-independent Cl/HCO 97.0 0.085 1.8E-06 56.2 19.7 279 42-346 363-692 (876)
21 PF00955 HCO3_cotransp: HCO3- 90.2 0.39 8.5E-06 49.1 4.8 119 216-346 277-397 (510)
22 TIGR00843 benE benzoate transp 82.0 9.1 0.0002 38.1 9.2 166 34-236 221-393 (395)
23 PF05977 MFS_3: Transmembrane 74.3 40 0.00087 34.8 11.7 132 28-172 214-345 (524)
24 PLN00028 nitrate transmembrane 69.0 1.3E+02 0.0028 30.2 14.0 39 60-98 63-105 (476)
25 TIGR00815 sulP high affinity s 63.3 1.5E+02 0.0033 30.8 13.4 80 76-180 295-374 (563)
26 PRK11660 putative transporter; 59.7 54 0.0012 34.2 9.3 82 75-181 314-395 (568)
27 PF03594 BenE: Benzoate membra 59.2 79 0.0017 31.3 9.6 165 34-235 205-376 (378)
28 COG0659 SUL1 Sulfate permease 53.7 76 0.0016 33.1 9.1 80 78-182 286-365 (554)
29 TIGR03173 pbuX xanthine permea 49.6 57 0.0012 32.4 7.2 75 74-171 255-329 (406)
30 PRK03699 putative transporter; 48.0 91 0.002 30.1 8.4 36 55-90 228-263 (394)
31 PHA03255 BDLF3; Provisional 46.0 34 0.00073 29.9 4.2 36 8-47 162-197 (234)
32 PRK11412 putative uracil/xanth 44.4 43 0.00092 33.8 5.4 77 73-172 276-352 (433)
33 TIGR00892 2A0113 monocarboxyla 42.7 2.6E+02 0.0057 27.8 10.9 72 12-90 2-76 (455)
34 PRK15034 nitrate/nitrite trans 41.6 4E+02 0.0086 27.1 12.3 82 19-100 16-106 (462)
35 TIGR00710 efflux_Bcr_CflA drug 40.2 67 0.0014 30.4 5.9 37 54-90 228-264 (385)
36 TIGR00801 ncs2 uracil-xanthine 39.8 95 0.0021 31.0 7.1 76 74-172 271-346 (415)
37 PF13792 Sulfate_tra_GLY: Sulf 39.7 66 0.0014 24.6 4.6 58 33-103 15-74 (84)
38 TIGR00883 2A0106 metabolite-pr 38.9 2.3E+02 0.0051 26.4 9.5 37 54-90 241-277 (394)
39 TIGR00899 2A0120 sugar efflux 37.4 3.5E+02 0.0075 25.3 12.6 20 55-74 222-241 (375)
40 PRK10213 nepI ribonucleoside t 36.0 4.1E+02 0.0089 25.7 11.4 36 55-91 240-275 (394)
41 PRK03893 putative sialic acid 35.4 4.2E+02 0.0091 26.2 11.1 42 55-97 43-88 (496)
42 PRK11663 regulatory protein Uh 34.7 3.4E+02 0.0074 26.6 10.2 37 53-90 44-80 (434)
43 TIGR01299 synapt_SV2 synaptic 34.6 1.4E+02 0.0031 32.3 7.8 38 62-99 196-237 (742)
44 PRK05122 major facilitator sup 34.0 1.3E+02 0.0027 29.0 6.8 48 53-100 36-87 (399)
45 PRK09705 cynX putative cyanate 33.9 2.3E+02 0.005 27.4 8.7 36 55-91 228-263 (393)
46 PF07690 MFS_1: Major Facilita 32.0 94 0.002 28.7 5.4 40 51-90 225-265 (352)
47 PRK11273 glpT sn-glycerol-3-ph 31.5 2.5E+02 0.0055 27.7 8.7 43 54-98 51-97 (452)
48 PRK03545 putative arabinose tr 30.8 1.7E+02 0.0038 28.0 7.2 39 56-94 229-267 (390)
49 PRK14995 methyl viologen resis 30.5 4.3E+02 0.0093 26.5 10.3 60 31-90 258-317 (495)
50 PRK10091 MFS transport protein 30.0 1.6E+02 0.0034 28.3 6.8 34 58-91 225-258 (382)
51 TIGR00896 CynX cyanate transpo 29.2 2.8E+02 0.0061 26.0 8.3 35 55-90 220-254 (355)
52 TIGR00891 2A0112 putative sial 29.0 4.3E+02 0.0093 24.8 9.6 45 55-100 35-83 (405)
53 PRK10133 L-fucose transporter; 28.9 3.7E+02 0.008 26.6 9.4 49 51-100 45-97 (438)
54 TIGR00893 2A0114 d-galactonate 28.8 1.6E+02 0.0035 27.3 6.5 36 55-90 238-273 (399)
55 PRK10473 multidrug efflux syst 27.9 1.8E+02 0.0039 27.8 6.8 36 55-90 226-261 (392)
56 TIGR00886 2A0108 nitrite extru 27.0 1.8E+02 0.0039 27.2 6.5 33 54-86 247-279 (366)
57 TIGR00900 2A0121 H+ Antiporter 26.3 5.1E+02 0.011 23.7 10.4 38 53-90 232-269 (365)
58 TIGR00881 2A0104 phosphoglycer 25.7 2.2E+02 0.0047 26.4 6.8 36 55-90 239-274 (379)
59 PRK11715 inner membrane protei 25.5 3.7E+02 0.0081 27.2 8.5 28 131-158 407-434 (436)
60 TIGR02718 sider_RhtX_FptX side 25.3 2.2E+02 0.0048 27.3 6.9 19 55-74 231-249 (390)
61 PRK03545 putative arabinose tr 25.1 6E+02 0.013 24.2 10.8 64 33-97 7-77 (390)
62 TIGR00711 efflux_EmrB drug res 25.0 3.6E+02 0.0077 26.4 8.5 59 32-90 255-313 (485)
63 PRK15402 multidrug efflux syst 24.6 4.6E+02 0.01 25.1 9.0 57 34-90 12-70 (406)
64 PF00860 Xan_ur_permease: Perm 23.9 1.3E+02 0.0028 29.7 4.9 83 72-177 267-350 (389)
65 PF06123 CreD: Inner membrane 23.5 4.1E+02 0.0088 26.9 8.3 28 131-158 401-428 (430)
66 COG2807 CynX Cyanate permease 23.1 3.5E+02 0.0077 26.9 7.6 41 31-73 208-248 (395)
67 TIGR00710 efflux_Bcr_CflA drug 22.8 5.9E+02 0.013 23.7 9.2 35 55-90 28-62 (385)
68 PRK15403 multidrug efflux syst 22.5 2.7E+02 0.0058 27.2 6.9 38 52-89 238-275 (413)
69 COG2814 AraJ Arabinose efflux 22.0 2.5E+02 0.0054 28.0 6.4 67 24-95 203-270 (394)
70 TIGR00891 2A0112 putative sial 21.6 5.8E+02 0.013 23.9 9.0 36 55-90 261-296 (405)
71 PRK11102 bicyclomycin/multidru 21.1 1.8E+02 0.0038 27.5 5.2 35 56-90 218-252 (377)
72 PRK15011 sugar efflux transpor 21.1 7.3E+02 0.016 23.7 12.7 37 54-90 238-274 (393)
73 KOG2662 Magnesium transporters 21.1 4E+02 0.0088 26.6 7.5 27 71-97 349-375 (414)
74 PRK11663 regulatory protein Uh 20.7 3.2E+02 0.0069 26.8 7.1 37 55-91 266-302 (434)
75 PRK09528 lacY galactoside perm 20.6 3.7E+02 0.0081 26.0 7.5 69 31-99 9-81 (420)
76 PRK10489 enterobactin exporter 20.5 7.7E+02 0.017 23.7 11.6 153 10-176 198-354 (417)
77 PF00916 Sulfate_transp: Sulfa 20.0 2.1E+02 0.0046 26.3 5.4 80 76-180 183-262 (280)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.4e-53 Score=406.01 Aligned_cols=325 Identities=57% Similarity=1.064 Sum_probs=301.6
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHH-HHHHHHHHHHHHHHHHHHHHhCCCcceeecCc
Q 018861 24 ISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEK-AKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGS 102 (349)
Q Consensus 24 ~~~~~~~~~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~-~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s 102 (349)
..|+++|.|||.+.+.+|+||++.|.++++++|.+++++++.+++|. +++|+++++++||.|++|+++|.|+|+++|+|
T Consensus 1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S 80 (510)
T KOG1292|consen 1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS 80 (510)
T ss_pred CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence 36999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcccCCCCC---CChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhccc
Q 018861 103 YTFVPSTISIILAGRFSNYSG---DPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGL 179 (349)
Q Consensus 103 ~a~i~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l 179 (349)
++|+++..++.....+.|... .+++.|.+.+++++|++++++.+++++|++|+++++.|++.|..+.+.+.++|+++
T Consensus 81 fafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l 160 (510)
T KOG1292|consen 81 FAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGL 160 (510)
T ss_pred eehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhh
Confidence 999999999998767777542 23446899999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccchhcHHHHHHHHHHHHHH--hccchh--cccccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 018861 180 YEFGFPGVAKCVEIGLPQLVIIVFISQY--LPHVIK--RGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASC 255 (349)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~l~~~v~~~~~--~~~~~~--~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~~~~~~ 255 (349)
+..+...++.||+++++.+++++++++| .++..+ ++++.++++++++++++.|++|.++...+.+|+...+++.++
T Consensus 161 ~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~ 240 (510)
T KOG1292|consen 161 FQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC 240 (510)
T ss_pred HHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence 9999999999999999999999999999 533221 235689999999999999999999999988888777789999
Q ss_pred ccCccCcCCCCCceecCCCCCCCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchhhhhHHHHH
Q 018861 256 RTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILL 335 (349)
Q Consensus 256 ~~d~~~~i~~~~~~~~P~~~~fg~P~f~~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a~Gl~~il 335 (349)
|+|.+..++++||+.+|.|++||.|.||.+....++...++.++|++|++.+++|.+++++++++.+|||+..||+++++
T Consensus 241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL 320 (510)
T KOG1292|consen 241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLL 320 (510)
T ss_pred cccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHH
Confidence 99998888999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred hhhcCCCCCCccc
Q 018861 336 SGLFGTVNGTSVS 348 (349)
Q Consensus 336 aglfG~~p~t~~s 348 (349)
+|++|+-.++|.+
T Consensus 321 ~gl~G~gtG~Tt~ 333 (510)
T KOG1292|consen 321 AGLFGTGTGSTTS 333 (510)
T ss_pred HHhhCCCccceee
Confidence 9999999888766
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.8e-51 Score=401.84 Aligned_cols=285 Identities=28% Similarity=0.512 Sum_probs=260.6
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceee
Q 018861 24 ISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVM 99 (349)
Q Consensus 24 ~~~~~~~~~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi~~ 99 (349)
.....||++|++|.+.+|+||+++|+++++++|++++++.++++||+++++++++++||++|++|.+ .|.|+|+++
T Consensus 5 ~~~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~l 84 (451)
T COG2233 5 IYVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYL 84 (451)
T ss_pred ccCcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeE
Confidence 3445777889999999999999999999999999999999999999999999999999999999997 456999999
Q ss_pred cCccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhcCcceehhhhhhhhcc
Q 018861 100 GGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWR-NVTRFLSPLSVVPLISLVGFG 178 (349)
Q Consensus 100 g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~-~l~~~~Pp~V~g~~l~lIGl~ 178 (349)
|+||+++.++..+..+++ .+.+.++|+++.+|+++++++. +++ |++|+|||+|+|.+++.||++
T Consensus 85 G~sFafi~p~i~~~~~~g-------------~~~~~~~G~ii~ag~~~~li~~--~~~~~l~rlfPPvVtG~Vi~~IGls 149 (451)
T COG2233 85 GSSFAFVAPMIAIGGTTG-------------DGIAALLGGIIAAGLVYFLISP--IVKIRLARLFPPVVTGPVVLVIGLS 149 (451)
T ss_pred echHHHHHHHHHHHhccC-------------CchHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCCceEEeEeeeehhh
Confidence 999999999988876543 3689999999999999999998 456 999999999999999999999
Q ss_pred cccccccCcc--------------cchhcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCC
Q 018861 179 LYEFGFPGVA--------------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAY 244 (349)
Q Consensus 179 l~~~~~~~~~--------------~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~ 244 (349)
|++.+++++. ++..++..+++++++++++.| +++|+.++|+|+++||++++.+|.
T Consensus 150 L~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~-------g~~~~i~ILiGlv~G~~la~~~G~---- 218 (451)
T COG2233 150 LAPVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGK-------GFLRRIPILIGLVVGYLLALFMGM---- 218 (451)
T ss_pred hHHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHhCC----
Confidence 9999887543 145788899999899998875 579999999999999999999985
Q ss_pred CCCCcccccccccCccCcCCCCCceecCCCCCCCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc
Q 018861 245 NDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSR 324 (349)
Q Consensus 245 ~~~~~~~~~~~~~d~~~~i~~~~~~~~P~~~~fg~P~f~~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r 324 (349)
+|+++ +.++|||++|++++|++ .||+.+++++++++++.+.|++|++.++++.++++..++++++|
T Consensus 219 ------------vdf~~-v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~r 284 (451)
T COG2233 219 ------------VDFSG-VAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRR 284 (451)
T ss_pred ------------cCccc-cccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCccccc
Confidence 57876 78999999999999998 99999999999999999999999999999999987666789999
Q ss_pred chhhhhHHHHHhhhcCCCCCCccc
Q 018861 325 GVGWQGVGILLSGLFGTVNGTSVS 348 (349)
Q Consensus 325 ~l~a~Gl~~ilaglfG~~p~t~~s 348 (349)
++++||++++++|+||++|.|+||
T Consensus 285 g~~aDGlat~iag~fg~~p~Ttfa 308 (451)
T COG2233 285 GLLADGLATLIAGLFGGFPNTTFA 308 (451)
T ss_pred ceeeccHHHHHHHhcCCCCCCchh
Confidence 999999999999999999999997
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=1.1e-46 Score=372.26 Aligned_cols=279 Identities=16% Similarity=0.313 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHh
Q 018861 35 PEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIIL 114 (349)
Q Consensus 35 ~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~ 114 (349)
++++.+|+||+++|+++.+++|+++++++|+|++|+..+++++++++|++|++|+++|+|+|+++|+||++++++.++..
T Consensus 8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~ 87 (433)
T PRK11412 8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITL 87 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999888863
Q ss_pred hcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhcccccccccCccc-----
Q 018861 115 AGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAK----- 189 (349)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~~~~~~----- 189 (349)
.....+. .....+++..|+++++|++++++|.+++++|++|+|||.|+|.++++||+++++.+++++.+
T Consensus 88 ~~~~~g~------~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~ 161 (433)
T PRK11412 88 GEASRGT------PINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGI 161 (433)
T ss_pred cccccCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccC
Confidence 2110000 01123444566799999999999999999999999999999999999999999988764311
Q ss_pred ----------chhcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHH-HHhhcCCCCCCCcccccccccC
Q 018861 190 ----------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAH-LLTVGGAYNDAAPKTQASCRTD 258 (349)
Q Consensus 190 ----------~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~-~~g~~~~~~~~~~~~~~~~~~d 258 (349)
++.+++.++.+++.++++. |+++|++++|+|+++||+++. .++. |
T Consensus 162 ~~~~~~~~~~~~~~a~~~l~~il~~~~~~-------~g~~~~~svLiGiv~G~v~a~~~~g~-----------------d 217 (433)
T PRK11412 162 ADPNGKIQLPPFGLSVAVMCLVLAMIIFL-------PQRIARYSLLVGTIVGWILWAFCFPS-----------------S 217 (433)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHhCC-----------------C
Confidence 2345666666666666665 457999999999999999865 5442 4
Q ss_pred ccCcCCCCCceecCCCCCCCCCc-ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchhhhhHHHHHhh
Q 018861 259 RAGLIDAAPWIRVPWPFQWGAPS-FDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSG 337 (349)
Q Consensus 259 ~~~~i~~~~~~~~P~~~~fg~P~-f~~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a~Gl~~ilag 337 (349)
+.. +.+++|.. ++||.|. ||+.+++++++.+++.+.|++||+.+++|.++++.++++++||++.+||++|+++|
T Consensus 218 ~~~-v~~a~w~~----~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~lag 292 (433)
T PRK11412 218 HSL-SGELHWQW----FPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITV 292 (433)
T ss_pred cch-hccCCcee----ecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHH
Confidence 443 56778853 4589995 99999999999999999999999999999998766557899999999999999999
Q ss_pred hcCCCCCCccc
Q 018861 338 LFGTVNGTSVS 348 (349)
Q Consensus 338 lfG~~p~t~~s 348 (349)
+||+.|+|+||
T Consensus 293 lfg~~p~tt~s 303 (433)
T PRK11412 293 PLAVIPFSPFV 303 (433)
T ss_pred hcCCCCCCchh
Confidence 99999999997
No 4
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=1.1e-44 Score=359.61 Aligned_cols=272 Identities=20% Similarity=0.372 Sum_probs=234.8
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCCcceeecC
Q 018861 23 SISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF-GTRLPAVMGG 101 (349)
Q Consensus 23 ~~~~~~~~~~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~-G~rlPi~~g~ 101 (349)
+..|++|||||+++.+++|+||+++|+.+++++|+++ |+|+++ +++++|++|++|++. |.|+|+++|+
T Consensus 2 ~~~~~~~~~~p~~~~~~lglQhvl~m~~~~i~~Pli~----gl~~~~-------~l~~sGi~TliQ~~~~g~rlP~~~G~ 70 (428)
T PRK10720 2 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF----HINPAT-------VLLFNGIGTLLYLFICKGKIPAYLGS 70 (428)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHHH-------HHHHHHHHHHHHHHhccCccceEEeC
Confidence 4679999999999999999999999999999999986 788864 679999999999975 4699999999
Q ss_pred ccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhh--hh-hhhhhhhcCcceehhhhhhhhcc
Q 018861 102 SYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS--GL-WRNVTRFLSPLSVVPLISLVGFG 178 (349)
Q Consensus 102 s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~t--g~-~~~l~~~~Pp~V~g~~l~lIGl~ 178 (349)
||++++++..+.. .+||+++|+++++|+++++++++ |+ ++|++|+|||.|+|.++++||++
T Consensus 71 sfa~i~~~~~~~~----------------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~ 134 (428)
T PRK10720 71 SFAFISPVLLLLP----------------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLE 134 (428)
T ss_pred cHHHHHHHHHHHH----------------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999998876642 37999999999999999999997 22 67999999999999999999999
Q ss_pred cccccccCcc-----------cchhcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 018861 179 LYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDA 247 (349)
Q Consensus 179 l~~~~~~~~~-----------~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~ 247 (349)
+++.++.+.+ .++.+++++++++++++++.| +++|++++|+|+++||++++.+|.
T Consensus 135 L~~~~~~~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~k-------g~~~~~~iLigIvvG~ila~~lG~------- 200 (428)
T PRK10720 135 LAGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGM------- 200 (428)
T ss_pred hHHHHHhhccccCCCCcccchHHHHHHHHHHHHHHHHHHHhc-------cHHHHhHHHHHHHHHHHHHHHhcC-------
Confidence 9988776442 134567777777666665554 468899999999999999999975
Q ss_pred CcccccccccCccCcCCCCCceecCCCCCCCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchh
Q 018861 248 APKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVG 327 (349)
Q Consensus 248 ~~~~~~~~~~d~~~~i~~~~~~~~P~~~~fg~P~f~~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~ 327 (349)
.|++. +.+++|+++|. |+.|+||+..+..+++.+++.++|++|++.++++..+++..++++.||++.
T Consensus 201 ---------~d~~~-v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~ 267 (428)
T PRK10720 201 ---------VDTTP-IIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMF 267 (428)
T ss_pred ---------CCHHH-hhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHh
Confidence 35543 56788999985 567899999999999999999999999999999998765435678999999
Q ss_pred hhhHHHHHhhhcCCCCCCccc
Q 018861 328 WQGVGILLSGLFGTVNGTSVS 348 (349)
Q Consensus 328 a~Gl~~ilaglfG~~p~t~~s 348 (349)
+||++|+++|+||++|+|+|+
T Consensus 268 adGlatii~glfG~~p~tty~ 288 (428)
T PRK10720 268 ANGLSTVISGFFGSTPNTTYG 288 (428)
T ss_pred hhhHHHHHHHhcCCCCccccc
Confidence 999999999999999999997
No 5
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=3.2e-44 Score=356.16 Aligned_cols=285 Identities=20% Similarity=0.357 Sum_probs=237.6
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHH-HhCCCcceeec
Q 018861 22 PSISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQS-LFGTRLPAVMG 100 (349)
Q Consensus 22 ~~~~~~~~~~~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~-~~G~rlPi~~g 100 (349)
++..|++|||||+++++.+|+||+++|+++++++|+++ |+|++ ++++++|++|++|+ .+|+|+|+++|
T Consensus 17 ~~~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plil----gl~~~-------~tl~~sGi~TllQ~~~~G~rlP~v~G 85 (429)
T TIGR03616 17 EHHPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLM----GFDPN-------LTILMSGIGTLLFFLITGGRVPSYLG 85 (429)
T ss_pred cCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHh-------HHHHHHHHHHHHHHHHhCCCceeEEc
Confidence 45889999999999999999999999999999999996 68876 57999999999997 47999999999
Q ss_pred CccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh---hhhhhhcCcceehhhhhhhhc
Q 018861 101 GSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLW---RNVTRFLSPLSVVPLISLVGF 177 (349)
Q Consensus 101 ~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~---~~l~~~~Pp~V~g~~l~lIGl 177 (349)
+|++++.++..+.... ..+ . ..++++++|+++++|++++++++++.+ ++++|+|||.|+|.++++||+
T Consensus 86 ~sf~f~~~~~~~~~~~-~~~----~----~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGl 156 (429)
T TIGR03616 86 SSAAFVGAVIAATGYN-GQG----T----NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGL 156 (429)
T ss_pred CcHHHHHHHHHHHhhc-ccC----C----cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999876653211 100 0 136899999999999999999998654 899999999999999999999
Q ss_pred ccccccccCccc---chhcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCcccccc
Q 018861 178 GLYEFGFPGVAK---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQAS 254 (349)
Q Consensus 178 ~l~~~~~~~~~~---~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~~~~~ 254 (349)
++++.++++.+. ....++++++.++++.++.| +++|++++|+|+++||++++.++.. ++. .
T Consensus 157 sL~~vg~~~~~~~~~~~~~al~tl~~i~l~~l~~~-------~~l~~~avLiGivvG~iva~~l~~~--~g~-------~ 220 (429)
T TIGR03616 157 NLAPIAVKSVSASGFDSWMAVLTILCIGAVAVFTR-------GMLQRLLILVGLIAAYLAYFILTNV--FGL-------G 220 (429)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhh--cCC-------C
Confidence 999999887542 11246677666666666664 4688999999999999999876421 000 0
Q ss_pred cccCccCcCCCCCceecCCCCCCCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchhhhhHHHH
Q 018861 255 CRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGIL 334 (349)
Q Consensus 255 ~~~d~~~~i~~~~~~~~P~~~~fg~P~f~~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a~Gl~~i 334 (349)
.+.|++. +.+++|+++|+ |+.|.||++.+..+++.++++++|++|++.++++.++++ .++++||++.+||++|+
T Consensus 221 ~~vd~s~-v~~a~~~~lP~---~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~--~~~~i~r~l~adGl~t~ 294 (429)
T TIGR03616 221 KAVDFSP-ISQAAWFGLPN---FHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTGRN--LDPYMGRAFVGDGLATM 294 (429)
T ss_pred ccccCcc-cccCccccCCc---CCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCC--CCchhccchhhhhHHHH
Confidence 1357764 67889999994 678999999999999999999999999999999998754 33469999999999999
Q ss_pred HhhhcCCCCCCccc
Q 018861 335 LSGLFGTVNGTSVS 348 (349)
Q Consensus 335 laglfG~~p~t~~s 348 (349)
++|++|+.|.|+|+
T Consensus 295 ~agl~g~~p~tt~~ 308 (429)
T TIGR03616 295 LSGSVGGTGVTTYA 308 (429)
T ss_pred HHHhcCCCCCccee
Confidence 99999999999997
No 6
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=3.6e-44 Score=355.22 Aligned_cols=277 Identities=27% Similarity=0.490 Sum_probs=242.1
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceeecCccchHH
Q 018861 31 PPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGT---RLPAVMGGSYTFVP 107 (349)
Q Consensus 31 ~~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~---rlPi~~g~s~a~i~ 107 (349)
|||+++++.+|+||+++|+++++++|++++++. +|++|++.+++++++++|++|++|++..+ |+|.++|++|+++.
T Consensus 1 ~~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~ 79 (415)
T TIGR00801 1 RPPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVS 79 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHH
Confidence 689999999999999999999999999999998 99999999999999999999999997533 36999999999999
Q ss_pred HHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhh--h-hhhhhhhhcCcceehhhhhhhhcccccccc
Q 018861 108 STISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS--G-LWRNVTRFLSPLSVVPLISLVGFGLYEFGF 184 (349)
Q Consensus 108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~t--g-~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~ 184 (349)
+...+..+ ++|++++|+++++|+++++++++ | .++|++|+|||.|+|.++++||+++++.++
T Consensus 80 ~~~~~~~~---------------~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l 144 (415)
T TIGR00801 80 PMIAIGSG---------------LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAV 144 (415)
T ss_pred HHHHHHhc---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHH
Confidence 87666432 47999999999999999999985 3 367899999999999999999999999888
Q ss_pred cCcc--------------cchhcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 018861 185 PGVA--------------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPK 250 (349)
Q Consensus 185 ~~~~--------------~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~ 250 (349)
++.+ .++.++++++++++++.++.| +++|++++|+|+++||++++.+|.
T Consensus 145 ~~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~-------g~~~~~aiLigiv~g~i~a~~lg~---------- 207 (415)
T TIGR00801 145 KMAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGK-------GFLKSISILIGILVGYILALFMGI---------- 207 (415)
T ss_pred HHhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHcCC----------
Confidence 6542 124567777777766766654 468899999999999999999875
Q ss_pred cccccccCccCcCCCCCceecCCCCCCCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchhhhh
Q 018861 251 TQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQG 330 (349)
Q Consensus 251 ~~~~~~~d~~~~i~~~~~~~~P~~~~fg~P~f~~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a~G 330 (349)
.|+++ +.++||+++|.+++|+ |+||+..+..++++++++++|++|+++++++.+|++.++++++||++.+||
T Consensus 208 ------~~~~~-v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adG 279 (415)
T TIGR00801 208 ------VDFSP-VIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADG 279 (415)
T ss_pred ------ccchh-hccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhh
Confidence 35543 5678999999988887 799999999999999999999999999999999875433678999999999
Q ss_pred HHHHHhhhcCCCCCCccc
Q 018861 331 VGILLSGLFGTVNGTSVS 348 (349)
Q Consensus 331 l~~ilaglfG~~p~t~~s 348 (349)
++|+++|+||++|.|+|+
T Consensus 280 l~~i~aglfG~~p~t~~s 297 (415)
T TIGR00801 280 LATLLAGLFGGFPNTTFA 297 (415)
T ss_pred HHHHHHHhcCCCCCcchh
Confidence 999999999999999996
No 7
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=6.4e-45 Score=358.20 Aligned_cols=280 Identities=32% Similarity=0.596 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH-hCCCcceeecCccchHHHHHHHH
Q 018861 35 PEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL-FGTRLPAVMGGSYTFVPSTISII 113 (349)
Q Consensus 35 ~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~-~G~rlPi~~g~s~a~i~~~~~i~ 113 (349)
+||+++|+||+++|+++++++|.++++++|+ ++++..+++++++++|++|++|++ +|+|+|+++|+|++++.......
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGL-DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccc
Confidence 5899999999999999999999999999898 777789999999999999999999 89999999999999888332221
Q ss_pred hhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhcccccccccCccc----
Q 018861 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAK---- 189 (349)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~~~~~~---- 189 (349)
.. ++.+..++++++|+++++|++++++++++.++|++|+|||.|+|.++++||+++.+.++++.+.
T Consensus 80 g~----------~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~ 149 (389)
T PF00860_consen 80 GM----------AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGN 149 (389)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---
T ss_pred cc----------ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccc
Confidence 10 0223479999999999999999999999999999999999999999999999999988765432
Q ss_pred ----------chhcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCc
Q 018861 190 ----------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDR 259 (349)
Q Consensus 190 ----------~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~~~~~~~~d~ 259 (349)
+..++..+++..+.+.++. ++++|++++|+|+++||++++.+|.. |+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ailigi~~g~i~~~~~g~~----------------~~ 206 (389)
T PF00860_consen 150 PDGLLVGDGKNLGLAVLTLLFILLLSLFL-------KGFLRKGAILIGIIAGWIVAAILGVV----------------DF 206 (389)
T ss_dssp BTT-B---HHHHHHHHHHHHHHHHHHHSS-------STTTTTHHHHHHHHHHHHHHHHHHHT----------------TS
T ss_pred ccccccccccccccccccchhhhhhhhhh-------hhhcccccchhhhhhhhhhhhccccc----------------cc
Confidence 1233444444444455444 45788999999999999999999963 44
Q ss_pred cCcCCCCCceecCCCCCCCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchhhhhHHHHHhhhc
Q 018861 260 AGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLF 339 (349)
Q Consensus 260 ~~~i~~~~~~~~P~~~~fg~P~f~~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a~Gl~~ilaglf 339 (349)
++.+.++||+++|++++|++|.||+.+++.++..++++++|++|++.+++|.+++++++++++||++.+||++++++|+|
T Consensus 207 ~~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~ 286 (389)
T PF00860_consen 207 SPSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLF 286 (389)
T ss_dssp SH-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhh
Confidence 42256789999999999999999999999999999999999999999999999977666889999999999999999999
Q ss_pred CCCCCCccc
Q 018861 340 GTVNGTSVS 348 (349)
Q Consensus 340 G~~p~t~~s 348 (349)
|+.|+|+|+
T Consensus 287 G~~~~t~~~ 295 (389)
T PF00860_consen 287 GTSPTTTYS 295 (389)
T ss_dssp T---EEE-H
T ss_pred cCCCCcccc
Confidence 999999996
No 8
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=1.1e-42 Score=344.30 Aligned_cols=266 Identities=33% Similarity=0.562 Sum_probs=232.2
Q ss_pred HHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHH----HhCCCcceeecCccchHHHHHHHHhhc
Q 018861 41 GFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQS----LFGTRLPAVMGGSYTFVPSTISIILAG 116 (349)
Q Consensus 41 glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~----~~G~rlPi~~g~s~a~i~~~~~i~~~~ 116 (349)
|+||+++|+++++++|++++++.|+|++|+..+++++++++|++|++|+ .+|+|+|+++|||++++.++..+..+
T Consensus 1 ~~Qh~l~~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~- 79 (406)
T TIGR03173 1 GLQHVLAMYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG- 79 (406)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh-
Confidence 6899999999999999999999999999999999999999999999997 46899999999999999887665432
Q ss_pred ccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhcccccccccCcc--------
Q 018861 117 RFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA-------- 188 (349)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~~~~~-------- 188 (349)
++|++++|+++++|++++++| +.++|++|+|||.|+|.++++||+++.+.++++..
T Consensus 80 --------------~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~ 143 (406)
T TIGR03173 80 --------------GGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDF 143 (406)
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 479999999999999999999 47899999999999999999999999888775432
Q ss_pred ---cchhcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCccCcCCC
Q 018861 189 ---KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDA 265 (349)
Q Consensus 189 ---~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~~~~~~~~d~~~~i~~ 265 (349)
+++.+++.++++++++.++. |+++|++++|+++++||++++.+|. .|+++ +.+
T Consensus 144 ~~~~~~~l~l~~l~~~il~~~~~-------~~~~~~~aiLi~ivvg~iva~~~g~----------------~~~~~-i~~ 199 (406)
T TIGR03173 144 GSPQNLGLALLTLVIILLLNRFG-------KGFLRSIAVLLGLVVGTIVAAALGM----------------VDFSG-VAE 199 (406)
T ss_pred cchHHHHHHHHHHHHHHHHHHHh-------hhHHHHhHHHHHHHHHHHHHHHhcC----------------CCchh-hcc
Confidence 23456777777666665554 3468889999999999999999875 34443 566
Q ss_pred CCceecCCCCCCCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchhhhhHHHHHhhhcCCCCCC
Q 018861 266 APWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGT 345 (349)
Q Consensus 266 ~~~~~~P~~~~fg~P~f~~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a~Gl~~ilaglfG~~p~t 345 (349)
.+|+.+|++++|++|+||+..+..++.+++++++|++|+..++++.++++ .+++++||++.+||++|+++|+||++|+|
T Consensus 200 ~~~~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~~-~~~~~~~~~l~~~Gi~~i~aglfG~~p~t 278 (406)
T TIGR03173 200 APWFALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGRP-ITEKDLAGGLRADGLGSALGGLFNTFPYT 278 (406)
T ss_pred CCeeeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCchhccchHHhccHHHHHHHHhCCCCCc
Confidence 79999998888999999999999999999999999999999999998754 46678999999999999999999999999
Q ss_pred ccc
Q 018861 346 SVS 348 (349)
Q Consensus 346 ~~s 348 (349)
+|+
T Consensus 279 ~~~ 281 (406)
T TIGR03173 279 SFS 281 (406)
T ss_pred chh
Confidence 986
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.96 E-value=3.5e-28 Score=236.73 Aligned_cols=281 Identities=16% Similarity=0.227 Sum_probs=209.4
Q ss_pred CCCCcccccCCCC-ChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCccee
Q 018861 20 QLPSISYCITSPP-PWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAV 98 (349)
Q Consensus 20 ~~~~~~~~~~~~~-p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~ 98 (349)
+-.|+.|+++||. ..++|+++|+++|++|.|.+.++|.+++++ |+|.+ .+..+|++.++++|++++++ .|+|+.
T Consensus 4 ~~~~~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~a-g~~~~---av~~AT~l~a~~gs~~mgl~-An~P~a 78 (436)
T COG2252 4 GDLDRFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGAA-GMPVG---AVFVATCLAAAIGSIAMGLY-ANLPIA 78 (436)
T ss_pred hHHHHHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHhc-CCCch---hHHHHHHHHHHHHHHHHHHH-HcCchh
Confidence 3458999999999 799999999999999999999999999997 78844 77889999999999999997 899999
Q ss_pred ecCc---cchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhh
Q 018861 99 MGGS---YTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLV 175 (349)
Q Consensus 99 ~g~s---~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lI 175 (349)
++|. .++.... +...++ .+||+++++++++|+++++++++|+|+|++|.+|....-.+..+|
T Consensus 79 lapgmglnAfFaft--vv~~~g-------------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGI 143 (436)
T COG2252 79 LAPGMGLNAFFAFT--VVLGMG-------------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGI 143 (436)
T ss_pred hcchhhHHHHHHHH--HHHhcC-------------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH
Confidence 9985 3444332 333343 489999999999999999999999999999999986655444455
Q ss_pred hcccccccccCcc----------------c-chhcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHH
Q 018861 176 GFGLYEFGFPGVA----------------K-CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLL 238 (349)
Q Consensus 176 Gl~l~~~~~~~~~----------------~-~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~ 238 (349)
|+.+...++++.+ + ...++++++++++++ ..+++ +.+++++++..+++++.+
T Consensus 144 GlFia~IgL~~~Givv~~~~tlv~LG~~~~p~vll~i~G~~l~~~L--~~~~i---------~Gaili~i~~~t~~g~~~ 212 (436)
T COG2252 144 GLFIALIGLKNAGIVVANPATLVALGDFTSPGVLLAILGLLLIIVL--VSRKI---------KGAILIGILVTTILGIIL 212 (436)
T ss_pred HHHHHHHHHhhCCeEEecCcceEEeecCCCchHHHHHHHHHHHHHH--HHhhc---------cHhhhHHHHHHHHHHHHh
Confidence 5444444433221 1 234566666665554 23332 689999999999999999
Q ss_pred hhcCCCCCCCcccccccccCccCcCCCCCceecCCCCCCCCC--cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018861 239 TVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAP--SFDAGEAFAMMMASFVALVESTGAFFAVARYASATP 316 (349)
Q Consensus 239 g~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~P~~~~fg~P--~f~~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~ 316 (349)
|.... +.+.....|.. .|...+.+.. ...++.+..++.+.+++.+|++|++.++++.++..+
T Consensus 213 g~~~~---------------~~~~~~~~p~~-~~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~ 276 (436)
T COG2252 213 GIDVH---------------FGGLVGAPPSL-SPIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLD 276 (436)
T ss_pred ccccc---------------ccccccCCCCc-cchhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcC
Confidence 85311 00000000100 0111111111 122566667799999999999999999999998754
Q ss_pred C--CccccccchhhhhHHHHHhhhcCCCCCCcc
Q 018861 317 M--PPSVLSRGVGWQGVGILLSGLFGTVNGTSV 347 (349)
Q Consensus 317 ~--~~~~~~r~l~a~Gl~~ilaglfG~~p~t~~ 347 (349)
+ +.++.+|.+.+|++++++++++|+.|.|+|
T Consensus 277 ~~g~~~~~~~al~~D~v~t~~ga~~GtS~~t~y 309 (436)
T COG2252 277 KNGKMPRIGKALLADSVATVVGALFGTSTVTAY 309 (436)
T ss_pred CCCCccccchHHHHhHHHHHHHHhcCCcchhhh
Confidence 3 357899999999999999999999999998
No 10
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.95 E-value=5.5e-26 Score=220.63 Aligned_cols=255 Identities=14% Similarity=0.193 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHhh
Q 018861 36 EAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILA 115 (349)
Q Consensus 36 ~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~~ 115 (349)
..+.+|+..+++.+.+.+++.+..+++.|+|++|.++|+++.++.+|++|++|++. +|+|++++||. ...++.+...
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awSt--PGaAll~~~~ 98 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWSA--PGAALLVTGF 98 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecCc--hHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999995 89999999993 2333222222
Q ss_pred cccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhcccccccccCcccchhcHH
Q 018861 116 GRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGL 195 (349)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~~~~~~~~~l~~ 195 (349)
.+ .+++++.|+++++|++.+++|++|+++|++|++|+.+.+.+++++.+......+....+.+.++.
T Consensus 99 ~~-------------~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~ 165 (395)
T TIGR00843 99 PG-------------ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICF 165 (395)
T ss_pred CC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11 47999999999999999999999999999999999999999988866553333344445565554
Q ss_pred HHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCccCcCCCCCceecCCCC
Q 018861 196 PQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPF 275 (349)
Q Consensus 196 ~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~P~~~ 275 (349)
+.++..++ . ||+.+++++++++++|+++++..|.. |.++ . ++ +++.|
T Consensus 166 ~mll~~l~----~-------~r~~Pr~avl~aLlvG~iva~~~G~~----------------~~~~-~---~~-~l~~p- 212 (395)
T TIGR00843 166 SMLLCWLA----S-------KAFAPRYAMIAALICGIAFSFALGDM----------------NPTD-L---DF-KIALP- 212 (395)
T ss_pred HHHHHHHH----H-------HHhcchHHHHHHHHHHHHHHHHhcCC----------------Cccc-c---cc-ccccc-
Confidence 43333222 1 33567899999999999999988753 2211 1 11 12222
Q ss_pred CCCCCcccHhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchhhhhHHHHHhhhcCCCC
Q 018861 276 QWGAPSFDAGEAFAM-MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVN 343 (349)
Q Consensus 276 ~fg~P~f~~~~l~~~-~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a~Gl~~ilaglfG~~p 343 (349)
.|..|+||+...+.. ++.+++++.++..+-.++.|.+|++. +.|+.+.++|++|+++++||+++
T Consensus 213 ~~~~P~fs~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~----p~~~~~~~tGl~sll~ApfGg~~ 277 (395)
T TIGR00843 213 QFIAPDFSFAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNA----PAKPIIAAAGLAALFAAFAGGIS 277 (395)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCC----CchHHHHHHHHHHHHHhccCCch
Confidence 466789998888776 89999999988877788999888654 47999999999999999999998
No 11
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.93 E-value=9e-25 Score=208.87 Aligned_cols=257 Identities=20% Similarity=0.229 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHhh
Q 018861 36 EAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILA 115 (349)
Q Consensus 36 ~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~~ 115 (349)
.++..|+..+++.+.+.+++.+..+++.|++++|+.+|+.+.++.+|+.|+..++. +|+|++.+||. ...++.+...
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~-yR~Pi~~AWSt--PGaAlL~~~~ 82 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLR-YRMPIVTAWST--PGAALLATSL 82 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhhcch--HHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999984 99999999995 3333333322
Q ss_pred cccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhcccccccccCcccchhcHH
Q 018861 116 GRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGL 195 (349)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~~~~~~~~~l~~ 195 (349)
.+ .+++|+.|+++++|++.+++|++|+++|+.|++|+.+...|++++-+..--..++...+++.+..
T Consensus 83 ~~-------------~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~ 149 (378)
T PF03594_consen 83 PG-------------YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVG 149 (378)
T ss_pred cC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22 58999999999999999999999999999999999999999987744333333344556777766
Q ss_pred HHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCccCcCCCCCceecCCCC
Q 018861 196 PQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPF 275 (349)
Q Consensus 196 ~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~P~~~ 275 (349)
+.++..++..| +.++++++.++++|.++++..|.. +..+ .+ +.+++|
T Consensus 150 ~ml~~~l~~~r-----------~~pr~av~~al~~g~~~a~~~g~~----------------~~~~----~~-~~~~~p- 196 (378)
T PF03594_consen 150 PMLAVFLLARR-----------FSPRYAVLAALVAGVAVAALTGQL----------------HPSA----LQ-LSLAHP- 196 (378)
T ss_pred HHHHHHHHHHH-----------HcchhHHHHHHHHHHHHHHhcCCC----------------Cccc----cc-ccccee-
Confidence 66665554433 345789999999999999887653 2211 11 133333
Q ss_pred CCCCCcccHhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchhhhhHHHHHhhhcCCCCCC
Q 018861 276 QWGAPSFDAGEAFAM-MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGT 345 (349)
Q Consensus 276 ~fg~P~f~~~~l~~~-~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a~Gl~~ilaglfG~~p~t 345 (349)
.|-.|+||+..++.+ +|++++++..+...-.++-|..|++ ++.|+-+...|++|++.++||+++.+
T Consensus 197 ~~~~P~Fs~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~----~p~~~~~~~tGl~s~l~ApfGg~~~n 263 (378)
T PF03594_consen 197 VFTTPEFSWSALVSLALPLFIVTMASQNLPGIAVLRAAGYQ----PPVNPLITVTGLASLLAAPFGGHAVN 263 (378)
T ss_pred EEECCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCC----CCchHHHHHHHHHHHHHhhhchhhhH
Confidence 567799999999998 9999999999888889999988864 48899999999999999999998764
No 12
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=1.2e-22 Score=190.50 Aligned_cols=255 Identities=23% Similarity=0.304 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHh
Q 018861 35 PEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIIL 114 (349)
Q Consensus 35 ~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~ 114 (349)
.+++..|++.+++.+.+..++.+..+++.|.+++|+++|+.+.++.+|+.|+..++. +|+|++.+||.- ..++.+.+
T Consensus 20 p~~l~ag~va~~vG~~~s~aii~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~~-yR~Pv~~aWSTP--G~all~as 96 (402)
T COG3135 20 PQTLLAGFVAVLVGYASSLAIIIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSLR-YRVPVLTAWSTP--GAALLVAS 96 (402)
T ss_pred chhhhhhhHHheeccCccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh-hccceeeeecCc--cHHHHHhc
Confidence 368899999999999999888888888899999999999999999999999999985 999999999963 22222332
Q ss_pred hcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhccccccccc---Ccccch
Q 018861 115 AGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFP---GVAKCV 191 (349)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~~---~~~~~~ 191 (349)
..+ .++.|+.|+++++|.+.++.|.+|.++|++|.+|+.+...++..| +.+.+++ ...+++
T Consensus 97 l~g-------------~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGI---LL~F~l~a~~a~~~~p 160 (402)
T COG3135 97 LGG-------------LSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGI---LLRFGLKAFKALPTQP 160 (402)
T ss_pred cCC-------------CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHH---HHHHHHHHHhccCCCh
Confidence 222 589999999999999999999999999999999999998888866 5565554 445677
Q ss_pred hcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCccCcCCCCCceec
Q 018861 192 EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRV 271 (349)
Q Consensus 192 ~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~ 271 (349)
.+.+..++..++..+ +-++++++.++++|.+++...|... .. ...+..+.
T Consensus 161 ~l~lpmv~~~ll~r~-----------f~pr~aV~aalvvgv~va~~~G~~~----------------~~---~~~~~~~~ 210 (402)
T COG3135 161 LLVLPMVLAYLLARV-----------FAPRYAVIAALVVGVLVAALLGDLH----------------TA---LVALEIST 210 (402)
T ss_pred HHHHHHHHHHHHHHH-----------cCchHHHHHHHHHHHHHHHHhCccc----------------cc---ccccccCc
Confidence 777666655444322 3457999999999999999988632 11 11222344
Q ss_pred CCCCCCCCCcccHhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchhhhhHHHHHhhhcCCCCCC
Q 018861 272 PWPFQWGAPSFDAGEAFAM-MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGT 345 (349)
Q Consensus 272 P~~~~fg~P~f~~~~l~~~-~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a~Gl~~ilaglfG~~p~t 345 (349)
| +|-.|+||+.+++.+ +++++++|..+...-.++-|.+|++ ++.+.-+.+.|+.++++++||++.++
T Consensus 211 p---~~v~P~Fs~~A~l~lalPL~lvtmasQN~pGiAvLka~gY~----pp~~pl~~~TGl~sll~ApfG~~t~n 278 (402)
T COG3135 211 P---TWVTPEFSFAAMLSLALPLFLVTMASQNLPGIAVLKAAGYQ----PPPSPLIVATGLASLLSAPFGGHTVN 278 (402)
T ss_pred c---eeeCCcccHHHHHHHhHHHHHHHHHhccCccceeehhcCCC----CCCchHHHHhHHHHHHhcccccceec
Confidence 4 577899999999998 8999999999998889999988864 46788999999999999999998764
No 13
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.79 E-value=6.3e-18 Score=172.54 Aligned_cols=254 Identities=17% Similarity=0.237 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHhhh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHH
Q 018861 34 WPEAILLGFQHYIVMLGTTVLIPTSLVP--QMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTIS 111 (349)
Q Consensus 34 ~~~~~~~glQ~~l~~~~~~i~~p~il~~--a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~ 111 (349)
++..+++|+.-.++. +|..++- ..|+|++ +.+.++-++.++.+++|.+.-.+.||..+....+..
T Consensus 21 l~~Dl~AGltva~va------lP~ama~a~~aGv~p~-------~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~ 87 (554)
T COG0659 21 LRGDLLAGLTVAAVA------LPLAMAFAIAAGVPPE-------AGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAA 87 (554)
T ss_pred hHHHHHHHHHHHHHH------hHHHHHHHHHcCCCHH-------HHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHH
Confidence 778899999855444 4544443 3799985 777888888999999977777789987665554444
Q ss_pred HHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhcccccccccCc----
Q 018861 112 IILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV---- 187 (349)
Q Consensus 112 i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~~~~---- 187 (349)
+.+... .++++.+.-+.+++|++++++|++|+ +++.|++|+.|+-.++.+||+.++..++..+
T Consensus 88 ~i~~~~------------~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~ 154 (554)
T COG0659 88 VIASLV------------ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLA 154 (554)
T ss_pred HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 443110 15899999999999999999999997 9999999999998999999997765544211
Q ss_pred --c----------------cch---hcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 018861 188 --A----------------KCV---EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYND 246 (349)
Q Consensus 188 --~----------------~~~---~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~ 246 (349)
. .|+ .++.+++.+++.+.++. .|.++.|+++++++.+++.++...
T Consensus 155 ~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~~~~~~----------~~~P~~liaiv~~t~i~~~~~~~~---- 220 (554)
T COG0659 155 SKVSGFWAKVSALFTVLLTINLATLLLGLLTLAILLFLPRLT----------PRIPSPLIALVLGTLIVWIFPLDS---- 220 (554)
T ss_pred ccccchHHHHHHHHHhcccccHHHHHHHHHHHHHHHHccchh----------hhCCcHHHHHHHHHHHHHHhcCCc----
Confidence 1 122 23334444333332222 234678999999999999887521
Q ss_pred CCcccccccccCccCcCCCCCceecCCCC-CCCCCcccH----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 018861 247 AAPKTQASCRTDRAGLIDAAPWIRVPWPF-QWGAPSFDA----GEAFAMMMASFVALVESTGAFFAVARYASATPMPPSV 321 (349)
Q Consensus 247 ~~~~~~~~~~~d~~~~i~~~~~~~~P~~~-~fg~P~f~~----~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~ 321 (349)
. +.+ +..++ +|..+ +|+.|.+++ ..+...+.++++.+.|++.+..+.++..++ +++
T Consensus 221 --~------~~G--~i~~~-----lp~~~~~~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d 281 (554)
T COG0659 221 --L------RYG--EIPGS-----LPSGLPHFRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHD 281 (554)
T ss_pred --h------hcc--cCccc-----CCcCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCC
Confidence 0 011 11222 22211 345566654 444445788899999999999999888764 568
Q ss_pred cccchhhhhHHHHHhhhcCCCCCCc
Q 018861 322 LSRGVGWQGVGILLSGLFGTVNGTS 346 (349)
Q Consensus 322 ~~r~l~a~Gl~~ilaglfG~~p~t~ 346 (349)
.||+++++|++|+.+|+||++|.|.
T Consensus 282 ~nrELiaqGiaNi~sglfgg~p~~g 306 (554)
T COG0659 282 SNRELIAQGIANIASGLFGGIPATG 306 (554)
T ss_pred CCHHHHHhhHHHHHHHHhCCccccc
Confidence 9999999999999999999999885
No 14
>PRK11660 putative transporter; Provisional
Probab=99.63 E-value=4.3e-14 Score=145.81 Aligned_cols=268 Identities=13% Similarity=0.154 Sum_probs=167.7
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHH
Q 018861 33 PWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISI 112 (349)
Q Consensus 33 p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i 112 (349)
.++..+.+|++-.+......+.... ..|+++. ..+.++-+.+++.+++|+..-++.||+.+.......+
T Consensus 28 ~l~~D~iAGltv~~~~iPq~mayA~----lag~pp~-------~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~ 96 (568)
T PRK11660 28 RFTRDLIAGITVGIIAIPLAMALAI----ASGVPPQ-------YGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPV 96 (568)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----HcCCChH-------HHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHH
Confidence 4778899999966655544443332 2688885 4678888899999999877778899875432222122
Q ss_pred HhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhcccccccccCc-----
Q 018861 113 ILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV----- 187 (349)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~~~~----- 187 (349)
..+ .+.+.+..+.+++|++++++|++|+ +++.|++|..|+..++..+|+.++..++...
T Consensus 97 ~~~---------------~~~~~~~~~~~l~Gii~~l~gllrl-G~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~ 160 (568)
T PRK11660 97 SQQ---------------FGLAGLLVATLMSGIILILMGLARL-GRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQM 160 (568)
T ss_pred HHH---------------hhHHHHHHHHHHHHHHHHHHHHHhh-hHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 221 3456677789999999999999996 8999999999999999988886554332111
Q ss_pred ---c----------------cch---hcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCC
Q 018861 188 ---A----------------KCV---EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYN 245 (349)
Q Consensus 188 ---~----------------~~~---~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~ 245 (349)
. .+| .+++.++++++++.++. .|....++++++++++++.++..+. +
T Consensus 161 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~lll~~~~~~----------~~iP~~li~iiv~t~~~~~~~~~~~-~ 229 (568)
T PRK11660 161 AHVPEHYLEKVGALFQALPTINWGDALIGIVTLGVLILWPRLK----------IRLPGHLPALLAGTAVMGVLNLLGG-H 229 (568)
T ss_pred CCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhhc----------ccCchHHHHHHHHHHHHHHHhccCC-C
Confidence 0 012 23444444443332221 1235668999999999888864210 0
Q ss_pred CCCcccccccccCccCcCCCCCceecCCCC-CCCCC-----------cccHhH----HHHHHHHHHHHHHHHHHHHHHHH
Q 018861 246 DAAPKTQASCRTDRAGLIDAAPWIRVPWPF-QWGAP-----------SFDAGE----AFAMMMASFVALVESTGAFFAVA 309 (349)
Q Consensus 246 ~~~~~~~~~~~~d~~~~i~~~~~~~~P~~~-~fg~P-----------~f~~~~----l~~~~~~~iv~~~es~g~~~a~~ 309 (349)
.... +.......+ -....+ .+|..+ ++..| .+|+.. +...+.++++..+|++......+
T Consensus 230 v~~v--g~~~~~~~~--~g~~~~-~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~ 304 (568)
T PRK11660 230 VATI--GSRFHYVLA--DGSQGN-GIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLD 304 (568)
T ss_pred ceee--ccccccccc--cccccc-CCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000000000 000000 112100 11111 235443 44457788888999987777777
Q ss_pred HHhcCCCCCccccccchhhhhHHHHHhhhcCCCCCCcc
Q 018861 310 RYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSV 347 (349)
Q Consensus 310 ~~~~~~~~~~~~~~r~l~a~Gl~~ilaglfG~~p~t~~ 347 (349)
+..++ +.+.||++.++|++|+++|+||++|.+++
T Consensus 305 ~~~~~----~~d~n~EL~a~G~aNi~~~~fgg~p~~~s 338 (568)
T PRK11660 305 GMTGT----KHSANSELVGQGLGNIVAPFFGGITATAA 338 (568)
T ss_pred HhcCC----CCCCcHHHHHHhHHHHHHHHhCcccccch
Confidence 76543 45899999999999999999999999876
No 15
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.58 E-value=1.5e-13 Score=141.77 Aligned_cols=272 Identities=15% Similarity=0.147 Sum_probs=169.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHH
Q 018861 34 WPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISII 113 (349)
Q Consensus 34 ~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~ 113 (349)
++..+.+|++-.+..+...+.... ..|+++. ..+.++.+..++.+++|+..-++.||..+.-.....+.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~----laglpp~-------~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v 82 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAI----LAGLSPI-------YGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVI 82 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH----HcCCCch-------hhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHH
Confidence 678899999865555443333322 2699985 56788888999999998877788888753322222233
Q ss_pred hhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhcccccccc------cCc
Q 018861 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGF------PGV 187 (349)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~------~~~ 187 (349)
..++..+ .++ ....+.+....+++|++++++|++|+ +++.+++|..|+..++..+|+.++..++ +..
T Consensus 83 ~~~~~~~---~~~---~~~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~ 155 (563)
T TIGR00815 83 ARVGLQY---LFD---CDAIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIF 155 (563)
T ss_pred HHhcCCC---Ccc---cHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 2322111 100 13456677889999999999999997 9999999999999999999986653322 210
Q ss_pred -----------------c-c---chhcHHHHHHHHHHHHHHhccchhccccc--chhhhHHHHHHHHHHHHHHHhhcCCC
Q 018861 188 -----------------A-K---CVEIGLPQLVIIVFISQYLPHVIKRGKNI--FDRFAVIFSVVIVWIYAHLLTVGGAY 244 (349)
Q Consensus 188 -----------------~-~---~~~l~~~~l~~~v~~~~~~~~~~~~~~~~--~~~~aiLigi~vg~i~a~~~g~~~~~ 244 (349)
. . |+....+.+..++++ ...|++.++.++. ...+..|+.+++++++.+.++...
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~-- 232 (563)
T TIGR00815 156 NTRTDTLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFL-LYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKK-- 232 (563)
T ss_pred CCCCChHHHHHHHHHHhhhccccchHHHHHHHHHHHHH-HHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCC--
Confidence 0 1 232222222221111 1222221111111 123577899999988776663210
Q ss_pred CCCCcccccccccCccCcCCCCCceecCCCCCCCCCcccHhH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 018861 245 NDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGE----AFAMMMASFVALVESTGAFFAVARYASATPMPPS 320 (349)
Q Consensus 245 ~~~~~~~~~~~~~d~~~~i~~~~~~~~P~~~~fg~P~f~~~~----l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~ 320 (349)
.+.. .+++-|- .+| .+..|.+|+.. +...+.++++.++|++...++.++..++ +.
T Consensus 233 ------------~~~~-~~g~ip~-g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~----~~ 291 (563)
T TIGR00815 233 ------------QGVS-ILGHIPS-GLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGY----KI 291 (563)
T ss_pred ------------CCeE-EEeecCC-CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CC
Confidence 0111 1111110 122 23345566444 3445788999999999988888886553 45
Q ss_pred ccccchhhhhHHHHHhhhcCCCCCCcc
Q 018861 321 VLSRGVGWQGVGILLSGLFGTVNGTSV 347 (349)
Q Consensus 321 ~~~r~l~a~Gl~~ilaglfG~~p~t~~ 347 (349)
+.||++.++|++|+++|+||++|.+..
T Consensus 292 d~n~El~a~G~~N~~~~~fg~~p~~~s 318 (563)
T TIGR00815 292 DANQELVAQGIANIVGSFFSCYPATGS 318 (563)
T ss_pred CCcHHHHHhhHHHHHHHHhCccCCCCc
Confidence 899999999999999999999999843
No 16
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=98.96 E-value=2.8e-08 Score=104.15 Aligned_cols=257 Identities=17% Similarity=0.195 Sum_probs=156.4
Q ss_pred hhhhHHHhhhc--CCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHH---HhhcccCCCCCCCh
Q 018861 52 TVLIPTSLVPQ--MGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISI---ILAGRFSNYSGDPV 126 (349)
Q Consensus 52 ~i~~p~il~~a--~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i---~~~~~~~~~~~~~~ 126 (349)
.+.+|--++-+ +|++|. ..+..+.+..++..++|+--++..||.. +...+.- ...... ..+.
T Consensus 92 ~l~VPQ~iaYa~la~lppi-------yGLYssf~~~~iY~~fGtsr~isiG~~a--v~sLmv~~~v~~~v~~----~~~~ 158 (665)
T KOG0236|consen 92 SLSVPQGLAYALLAGLPPI-------YGLYSSFFPPLIYAIFGTSRHVSIGPFA--VVSLMVGTVVSQVVLS----EAPS 158 (665)
T ss_pred eeecchHHHHHHHcCCChH-------HHHHHHHHHHHHheeccCCCcccccHHH--HHHHHHHHHHHHHHhc----cCCC
Confidence 34456545433 577774 6778888889999989999999888642 1111111 011000 0000
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhcccccccc------cCcc------------
Q 018861 127 EKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGF------PGVA------------ 188 (349)
Q Consensus 127 ~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~------~~~~------------ 188 (349)
......++.+....+++|++|+++|++|+ +++.+++|..++..++.+.++.+...++ +++.
T Consensus 159 ~~~~~~i~va~~lt~l~Giiq~~mG~lrL-Gfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~ 237 (665)
T KOG0236|consen 159 NDIATTIQVATTLTFLTGIIQLILGLLRL-GFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIV 237 (665)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEee
Confidence 00124788889999999999999999997 9999999988887788777775544332 2111
Q ss_pred -----c------chhcHHHHHHHHHHHHH-HhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCcccccccc
Q 018861 189 -----K------CVEIGLPQLVIIVFISQ-YLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCR 256 (349)
Q Consensus 189 -----~------~~~l~~~~l~~~v~~~~-~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~~~~~~~ 256 (349)
. ++.+++..+++++ +.+ +.++. |++-++.....-++.+++++++++.+.....+.
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~l~~L~-~~k~~~~~~-~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~----------- 304 (665)
T KOG0236|consen 238 FDLLANLPKTLATLVLSLIFLVVLL-LTKELNPKF-KKKLFSVPIPFELIVVIIGTLISYIFRLEGRYG----------- 304 (665)
T ss_pred HHhhhcccccchhhhhHHHHHHHHH-HHHHhhhhh-cccceeecccHHHHHHHHHHHHHHHhccccccC-----------
Confidence 0 1223333333332 333 22221 111111334468999999999998886531100
Q ss_pred cCccCcCCCCCceecCCCCCCCCCccc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchhhhhHHHH
Q 018861 257 TDRAGLIDAAPWIRVPWPFQWGAPSFD--AGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGIL 334 (349)
Q Consensus 257 ~d~~~~i~~~~~~~~P~~~~fg~P~f~--~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a~Gl~~i 334 (349)
.. ...+-|. ++| +...|.++ ...+...+.++++++.|+++--...++..+ +.-+-||+++|-|++|+
T Consensus 305 ~~---~~~~i~~-g~~---~~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~----y~vd~nqELiAlG~~Ni 373 (665)
T KOG0236|consen 305 PI---IVGEIPR-GFP---PPSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHG----YKVDSNQELIALGISNI 373 (665)
T ss_pred Ce---eeccCCC-CCC---CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CeeCCChHHHHHHHHHH
Confidence 00 0111110 122 12334333 344666788999999998776666666544 44588999999999999
Q ss_pred HhhhcCCCCCCc
Q 018861 335 LSGLFGTVNGTS 346 (349)
Q Consensus 335 laglfG~~p~t~ 346 (349)
++++|++.|+|.
T Consensus 374 ~sSff~~~p~tg 385 (665)
T KOG0236|consen 374 LSSFFGCYPTTG 385 (665)
T ss_pred hhhhhceEcccc
Confidence 999999999885
No 17
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.83 E-value=1.6e-09 Score=102.01 Aligned_cols=173 Identities=18% Similarity=0.210 Sum_probs=103.7
Q ss_pred HHhhhhhhhhhhhcCcceehhhhhhhhcccccccccCc---------c--------------c--ch---hcHHHHHHHH
Q 018861 150 LGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV---------A--------------K--CV---EIGLPQLVII 201 (349)
Q Consensus 150 lg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~~~~---------~--------------~--~~---~l~~~~l~~~ 201 (349)
+|++|+ +++.|++|..|+..++..+|+.++..+++.+ . + ++ .++..+++++
T Consensus 1 lGllrl-G~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (280)
T PF00916_consen 1 LGLLRL-GFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFL 79 (280)
T ss_pred Cccccc-cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHH
Confidence 367775 9999999999999999999987665443211 0 0 11 1122222222
Q ss_pred HHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccC-ccCcCCCCCceecCCCCCCCCC
Q 018861 202 VFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTD-RAGLIDAAPWIRVPWPFQWGAP 280 (349)
Q Consensus 202 v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~~~~~~~~d-~~~~i~~~~~~~~P~~~~fg~P 280 (349)
.. .++.++.. +++...+....++.+++++++++.++.... .++ ..+....-|.+.+|+ .
T Consensus 80 ~~-~~~~~~~~-~~~~~~~~p~~li~vv~~~~~~~~~~~~~~------------~v~~~~~i~~~lp~~~~p~-~----- 139 (280)
T PF00916_consen 80 LI-IRLLPKRL-PSRFWPPIPAPLIVVVLGTLLSWLFLLDKY------------GVAIVGEIPSGLPPPSLPS-F----- 139 (280)
T ss_pred hh-hhhhhhhc-cccccccccccceeeehhhhhhhhhhhccc------------cccccccccccCccccCcc-c-----
Confidence 22 22222110 112223345788889999888877643210 011 111111122223332 0
Q ss_pred ccc----HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchhhhhHHHHHhhhcCCCCCCcc
Q 018861 281 SFD----AGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSV 347 (349)
Q Consensus 281 ~f~----~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a~Gl~~ilaglfG~~p~t~~ 347 (349)
.+| ...+...+.++++..+|++.+..+.++..+ ++.+.||+++++|++|+++|+||++|.+..
T Consensus 140 ~~~~~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~----~~~d~n~El~a~G~aNi~s~~~gg~p~~~s 206 (280)
T PF00916_consen 140 DISWSLILDLLPTALAIAIVGFIESLLIAKSIAKKTG----YRIDPNQELIALGLANIVSGLFGGMPGSGS 206 (280)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhhhhhccccc----ccCCcHHHHHHhhhccccchhhcccccccc
Confidence 333 334445578889999999988877777554 345899999999999999999999998754
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=97.22 E-value=0.034 Score=60.17 Aligned_cols=251 Identities=14% Similarity=0.089 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceee-cCccchHHH----HHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHH
Q 018861 73 VIQTLLFVAGLNTLLQSLFGTRLPAVM-GGSYTFVPS----TISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQ 147 (349)
Q Consensus 73 li~at~~~~Gi~tllq~~~G~rlPi~~-g~s~a~i~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~ 147 (349)
-+.=++++++++.++.++++ ..|+.. |.+. .+.. ...+...++. .-++-..=..++++++.
T Consensus 402 gv~E~Llstai~Giifslf~-GQPL~IlG~TG-PilvF~~~ly~~c~~~~~------------~yl~~~~WigiW~~~~~ 467 (900)
T TIGR00834 402 GVSELLISTAVQGVLFALLA-AQPLLVVGFSG-PLLVFEEAFFSFCESNGL------------EYLVGRVWIGLWLVLLV 467 (900)
T ss_pred hHHHHHHHHHHHHHHHhhhc-CCceEEecCcc-cHHHHHHHHHHHHhhcCC------------chHHHHHHHHHHHHHHH
Confidence 34567899999999999985 666555 4442 2222 2222222110 11222233466778888
Q ss_pred HHHHhhhhhhhhhhhcCcceehhhhhhhhcccccccccCc----------------------------------------
Q 018861 148 IVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV---------------------------------------- 187 (349)
Q Consensus 148 ~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~~~~---------------------------------------- 187 (349)
++++++.. ..+.|+++...--.+-++|++..+..++..+
T Consensus 468 ~lla~~~~-s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (900)
T TIGR00834 468 LLLVATEG-SFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLG 546 (900)
T ss_pred HHHHHHhH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccccccccccc
Confidence 88888886 6788888876655555555553333222100
Q ss_pred --------ccchhcHHHHHHH---HHHHHHHhccchh------cccccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 018861 188 --------AKCVEIGLPQLVI---IVFISQYLPHVIK------RGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPK 250 (349)
Q Consensus 188 --------~~~~~l~~~~l~~---~v~~~~~~~~~~~------~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~ 250 (349)
...+..++..+++ .+.+..+++++.+ +.|+++.=+++.+++++-+.+.+.++... .+.-+.+
T Consensus 547 ~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v~-~~kl~Vp 625 (900)
T TIGR00834 547 GTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTY-TQKLSVP 625 (900)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccCc-ccccCCC
Confidence 0002223333322 3333444444321 23445566799999999998888765321 0000000
Q ss_pred cccccccCccCc-CCCCCceecCCCCCCCCCccc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchhh
Q 018861 251 TQASCRTDRAGL-IDAAPWIRVPWPFQWGAPSFD-AGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGW 328 (349)
Q Consensus 251 ~~~~~~~d~~~~-i~~~~~~~~P~~~~fg~P~f~-~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a 328 (349)
-.+.+. -..-+|+--|.......|.+. +.++++.+.+++.-.+|+.-+..-+++- +++-.+....+=.++.
T Consensus 626 ------~~f~pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~-e~kLkKgsgyH~Dlll 698 (900)
T TIGR00834 626 ------SGLKVTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKK-ERKLKKGSGFHLDLLL 698 (900)
T ss_pred ------CCcCCCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCc-cccCCCCcccchHHHH
Confidence 011110 011356632311000113332 5666667777888888876655444332 1111222346667889
Q ss_pred hhHHHHHhhhcCCCCCCc
Q 018861 329 QGVGILLSGLFGTVNGTS 346 (349)
Q Consensus 329 ~Gl~~ilaglfG~~p~t~ 346 (349)
-|+.+.++|+||-++.++
T Consensus 699 lg~~~~v~sllGLPw~~a 716 (900)
T TIGR00834 699 VVGMGGVAALFGLPWLSA 716 (900)
T ss_pred HHHHHHHHHhcCCCcccc
Confidence 999999999999887664
No 19
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.01 E-value=0.035 Score=53.76 Aligned_cols=274 Identities=15% Similarity=0.185 Sum_probs=144.2
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHH------HHHHHHHHHHHHHHHHHHHhCCCcce
Q 018861 24 ISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKA------KVIQTLLFVAGLNTLLQSLFGTRLPA 97 (349)
Q Consensus 24 ~~~~~~~~~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~------~li~at~~~~Gi~tllq~~~G~rlPi 97 (349)
..|+.||--|- ++|..--.+|++. +....++.+|++++-.. -++.+.+|+.=+++++.- ..|++=
T Consensus 55 ~rfE~ED~vPA----lAgtIGkivMvsA---v~aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P--~anLAG 125 (492)
T PF11840_consen 55 YRFEWEDLVPA----LAGTIGKIVMVSA---VAAAFAAPLGLSPEFVIENVRYELLIAALLFVILFSGFLNP--RANLAG 125 (492)
T ss_pred cccchHHhhHH----HHhhhhHHHHHHH---HHHHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCc--cccccC
Confidence 33444454442 2454445556544 22334455788886432 233333344333333332 356665
Q ss_pred eecCccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhc
Q 018861 98 VMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGF 177 (349)
Q Consensus 98 ~~g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl 177 (349)
-+||---.++. +++ .| +-+.++| ++-|++-++++.+|--.|+.+.-..-|.|..+..+|+
T Consensus 126 thgPmIpLIp~---iva-aG--------------gHPLalg--ilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~ 185 (492)
T PF11840_consen 126 THGPMIPLIPL---IVA-AG--------------GHPLALG--ILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGF 185 (492)
T ss_pred CCCCcchhhHH---HHH-cC--------------CCcHHHH--HHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehh
Confidence 56665433432 222 22 2344454 3457888899999888999999999999987777765
Q ss_pred ccccccccC----cc--cchhcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCccc
Q 018861 178 GLYEFGFPG----VA--KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKT 251 (349)
Q Consensus 178 ~l~~~~~~~----~~--~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~~ 251 (349)
.=...+++. .. +...++++.+.+.+++.-|+-++ .| |..++-++-+++-++++.+|..-.|.++
T Consensus 186 ~G~~~qi~kl~~wa~~~~~~~i~fvvi~~tiv~Ya~L~k~---~K---rWLaIPl~~~~a~~~a~~lGa~f~f~t~---- 255 (492)
T PF11840_consen 186 VGLIGQIKKLFAWANGFDMGYIAFVVIIVTIVLYAYLAKI---EK---RWLAIPLCSILAGVLAFALGAPFEFTTE---- 255 (492)
T ss_pred hhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHh---cc---chhhhhHHHHHHHHHHHHcCCCceeecC----
Confidence 321112211 11 23346666666655665566543 12 2467777777777777787763111110
Q ss_pred ccccccCccCcCCCCCceecCCCCCCCCCcccHhHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCC---Ccccccc
Q 018861 252 QASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALV----ESTGAFFAVARYASATPM---PPSVLSR 324 (349)
Q Consensus 252 ~~~~~~d~~~~i~~~~~~~~P~~~~fg~P~f~~~~l~~~~~~~iv~~~----es~g~~~a~~~~~~~~~~---~~~~~~r 324 (349)
.+. .+.+ ..=|..=-+-.+.|+|.++ -.+..+++++.++. |.+|+-. .++.+ +++. ..-+++.
T Consensus 256 pgl--p~ln----P~YWWge~tGw~LglP~~~--hfiav~PFAiLAVaMWSpDflghrv-Fqeln-ypk~~~kvlMnvDD 325 (492)
T PF11840_consen 256 PGL--PNLN----PMYWWGEETGWQLGLPTLE--HFIAVLPFAILAVAMWSPDFLGHRV-FQELN-YPKETKKVLMNVDD 325 (492)
T ss_pred CCC--CCCC----CcccccCCcccccCCCcHH--HHHHhccHHHHHHHHhCchHHHHHH-HHHhc-Cchhhcceeecccc
Confidence 001 0111 1112211111234556543 33444555544443 5555432 33333 2221 1236889
Q ss_pred chhhhhHHHHHhhhcCCCCCCc
Q 018861 325 GVGWQGVGILLSGLFGTVNGTS 346 (349)
Q Consensus 325 ~l~a~Gl~~ilaglfG~~p~t~ 346 (349)
......+=+++++.+|+-..++
T Consensus 326 Tm~~~siRQ~vGs~lGGgN~~S 347 (492)
T PF11840_consen 326 TMTMCSIRQIVGSILGGGNIAS 347 (492)
T ss_pred hhHHHHHHHHHhhcccCCcccc
Confidence 9999999999999999977665
No 20
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.085 Score=56.22 Aligned_cols=279 Identities=11% Similarity=0.102 Sum_probs=142.8
Q ss_pred HHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCccc---hHHHHHHHHhhccc
Q 018861 42 FQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYT---FVPSTISIILAGRF 118 (349)
Q Consensus 42 lQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a---~i~~~~~i~~~~~~ 118 (349)
+..++.++.+.+.+.+..+..++-. .+-..-+.=+++.+.++.++.+++|..--+++|.+.- |.-....+...++.
T Consensus 363 la~~lfiYfa~l~P~ItFG~ll~~~-Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~ 441 (876)
T KOG1172|consen 363 LAATLFIYFACLLPAITFGGLLGEA-TDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGL 441 (876)
T ss_pred chHHHHHHHHhhhhHhhHHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCC
Confidence 4556666666554444443322111 1223445678999999999999986444445554422 11222223322221
Q ss_pred CCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhhhhhhccccccccc-------------
Q 018861 119 SNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFP------------- 185 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l~lIGl~l~~~~~~------------- 185 (349)
.-++--.=..+++.++.++++++.. ..+.++|+..-=-.+-++|.+..+..++.
T Consensus 442 ------------dyl~~r~wVglW~~~l~illaa~~a-s~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~ 508 (876)
T KOG1172|consen 442 ------------DYLAFRAWVGLWTAFLLILLAATNA-SSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEF 508 (876)
T ss_pred ------------chhhHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 1122223346777888888888885 77788877644333333333322222221
Q ss_pred -------------Cc---c----------cchhcHHHHHHHHHHHHHHhccchh------cccccchhhhHHHHHHHHHH
Q 018861 186 -------------GV---A----------KCVEIGLPQLVIIVFISQYLPHVIK------RGKNIFDRFAVIFSVVIVWI 233 (349)
Q Consensus 186 -------------~~---~----------~~~~l~~~~l~~~v~~~~~~~~~~~------~~~~~~~~~aiLigi~vg~i 233 (349)
.. + ++..++++..+..+.+..++|++.+ +.|+++.=+++.+++++-+.
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~ 588 (876)
T KOG1172|consen 509 DSKPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSL 588 (876)
T ss_pred cccCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHH
Confidence 00 0 1122333333333444445555422 12344555689999999998
Q ss_pred HHHHHhhcCCCCCCCcccccccc-cCccCcCCC-CCceecCCCCCCCCCccc-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 234 YAHLLTVGGAYNDAAPKTQASCR-TDRAGLIDA-APWIRVPWPFQWGAPSFD-AGEAFAMMMASFVALVESTGAFFAVAR 310 (349)
Q Consensus 234 ~a~~~g~~~~~~~~~~~~~~~~~-~d~~~~i~~-~~~~~~P~~~~fg~P~f~-~~~l~~~~~~~iv~~~es~g~~~a~~~ 310 (349)
+.+..+... . +...+ ..++..-.. ..|+-.|. ...|-++ ..++++.+.+++.-++|+--+..-++|
T Consensus 589 i~~~~~~~~---~-----~kl~vp~~~~~t~~~~rgw~v~~~---~~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~r 657 (876)
T KOG1172|consen 589 IDYFGGSVE---T-----PKLPVPSVFPPTWPFDRGWFVPPF---GKNPWWYVFAALIPALLLTILIFMDQQITAVIVNR 657 (876)
T ss_pred HHhhccccC---C-----CccccCcCCCCCCcccCCeeeCCC---CCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhc
Confidence 887776321 0 00011 111110011 35654441 0123222 455556667777777776543332322
Q ss_pred HhcCCCCCccccccchhhhhHHHHHhhhcCCCCCCc
Q 018861 311 YASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTS 346 (349)
Q Consensus 311 ~~~~~~~~~~~~~r~l~a~Gl~~ilaglfG~~p~t~ 346 (349)
- +.+-.+....+=.++.-|+.+.++|+||-++..+
T Consensus 658 k-e~kLKKgsgyH~DLlllgil~~icsllGLPw~~~ 692 (876)
T KOG1172|consen 658 K-ENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNA 692 (876)
T ss_pred c-cccCCCCcchhHHHHHHHHHHHHHHhcCCCcccc
Confidence 1 1111233345667999999999999999887664
No 21
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=90.20 E-value=0.39 Score=49.14 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCccCcCCC-CCceecCCCCCCCCCccc-HhHHHHHHHH
Q 018861 216 KNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDA-APWIRVPWPFQWGAPSFD-AGEAFAMMMA 293 (349)
Q Consensus 216 ~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~~~~~~~~~~~~d~~~~i~~-~~~~~~P~~~~fg~P~f~-~~~l~~~~~~ 293 (349)
|+++.=+++.|++++-+.+...++. . .+.-+. ..++.+...+ -+|+--|. ...|.+. ..++++.+.+
T Consensus 277 R~~isDf~v~iaI~~~~~~~~~~~~-~-~~kL~v------p~~f~pt~~~~r~W~v~p~---~~~p~w~~~aA~~palll 345 (510)
T PF00955_consen 277 REIISDFGVPIAILIMTLVDYLFGV-D-TPKLNV------PSSFKPTSPGKRGWFVNPF---GSLPWWAIFAAIIPALLL 345 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHhhHHHHHHHHHHHHHHHhcc-c-ccccCC------CCCCCCCCCCCCCeecCcc---cCCCHHHHHHHHHHHHHH
Confidence 4566667899999998888766552 1 010000 0012110111 34653331 1223333 3455555666
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccccccchhhhhHHHHHhhhcCCCCCCc
Q 018861 294 SFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTS 346 (349)
Q Consensus 294 ~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l~a~Gl~~ilaglfG~~p~t~ 346 (349)
++.-.+|+.-+..-+++- +.|-.+....+=.+..-|+-+.++|++|-+...+
T Consensus 346 ~iL~F~DqnIts~ivn~~-e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~a 397 (510)
T PF00955_consen 346 TILFFMDQNITSLIVNRP-ENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNA 397 (510)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHhHhHHHhCCh-hhccCCCCcccHHHHHHHHHHHHHHHcCCCCccc
Confidence 777777765543333321 1111122345567889999999999999776554
No 22
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=81.99 E-value=9.1 Score=38.07 Aligned_cols=166 Identities=11% Similarity=0.150 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHH
Q 018861 34 WPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISII 113 (349)
Q Consensus 34 ~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~ 113 (349)
+...+-.++=.+.+...+--..-+-..++.|-++. +...+...|++|++-+.+| ..++..+. +.. ++.
T Consensus 221 ~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p-----~~~~~~~tGl~sll~ApfG-g~~~nlaa----ita--Aic 288 (395)
T TIGR00843 221 FAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAP-----AKPIIAAAGLAALFAAFAG-GISIGIAA----ITA--AIC 288 (395)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCC-----chHHHHHHHHHHHHHhccC-CchhhhhH----HhH--HHh
Confidence 33334444443333333222222334455555443 2677789999999999986 55554331 111 122
Q ss_pred hhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhhcCcceehhhhhhhhcccccc---cccC-cc
Q 018861 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS-GLWRNVTRFLSPLSVVPLISLVGFGLYEF---GFPG-VA 188 (349)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~t-g~~~~l~~~~Pp~V~g~~l~lIGl~l~~~---~~~~-~~ 188 (349)
.+. +. |++ ...=.++.+.+|++++++|++ +....+...+|+..+..+ -|+-+... ++.. +.
T Consensus 289 -----~G~--~a---h~d-~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~l---aGlAll~~~~~~l~~a~~ 354 (395)
T TIGR00843 289 -----MGK--DA---HED-KDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAAL---AGLALLGAIAGNIKIALH 354 (395)
T ss_pred -----cCc--cc---ccC-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 111 00 011 222356788999999999998 777889999998776542 23322221 1111 11
Q ss_pred --cchhcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHH
Q 018861 189 --KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAH 236 (349)
Q Consensus 189 --~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~ 236 (349)
++-+-+++++++.. .++ .++...+-.+|+++|.+..+
T Consensus 355 ~~~~r~~a~~tflvta------Sg~-----~~~gigaafWgl~~G~~~~~ 393 (395)
T TIGR00843 355 EDQERDAALIAFLATA------SGL-----HFLGIGSAFWGLCAGGLAYF 393 (395)
T ss_pred CcchhHHHHHHHHHHH------hcC-----CcccccHHHHHHHHHHHHHH
Confidence 22234555554422 221 24557899999999976654
No 23
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=74.33 E-value=40 Score=34.80 Aligned_cols=132 Identities=17% Similarity=0.131 Sum_probs=69.7
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCccchHH
Q 018861 28 ITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVP 107 (349)
Q Consensus 28 ~~~~~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~ 107 (349)
+.++|+++..+..+.-..++..+.....|.+..+..|.++.....+..+.-+.+-+++++...+..|++.-.--..+.+.
T Consensus 214 v~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~ 293 (524)
T PF05977_consen 214 VRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLL 293 (524)
T ss_pred HhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHH
Confidence 44556666666656555555444445568887777899988776666666666666677666554443321100011111
Q ss_pred HHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceehhhh
Q 018861 108 STISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLI 172 (349)
Q Consensus 108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~V~g~~l 172 (349)
...... ..+.. .....+..+.++.|......-. .....+.+..|+.+.|=+.
T Consensus 294 ~a~~~~-~lal~-----------~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~ 345 (524)
T PF05977_consen 294 FALALL-LLALS-----------PSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVF 345 (524)
T ss_pred HHHHHH-HHhcc-----------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHH
Confidence 111111 01110 2334445566777766555432 2345667888887766433
No 24
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=68.97 E-value=1.3e+02 Score=30.17 Aligned_cols=39 Identities=8% Similarity=0.018 Sum_probs=25.8
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCccee
Q 018861 60 VPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAV 98 (349)
Q Consensus 60 ~~a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi~ 98 (349)
.+..|+++.|........++...++.++.++ +|.|..+.
T Consensus 63 ~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~ 105 (476)
T PLN00028 63 RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSA 105 (476)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 4557999988766655555666677777765 56665443
No 25
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=63.32 E-value=1.5e+02 Score=30.81 Aligned_cols=80 Identities=14% Similarity=0.225 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 018861 76 TLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGL 155 (349)
Q Consensus 76 at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~ 155 (349)
.-+++.|++.++-+++| .+|...+.+- .. +..+.|. - ..+.. ++++++.+++.+ +
T Consensus 295 ~El~a~G~~N~~~~~fg-~~p~~~s~sr----s~--~~~~~G~--~---------t~~a~-----i~~~~~~l~~~l--~ 349 (563)
T TIGR00815 295 QELVAQGIANIVGSFFS-CYPATGSLSR----TA--VNAKAGC--R---------TQLSG-----VVTAIVVLLVLL--V 349 (563)
T ss_pred HHHHHhhHHHHHHHHhC-ccCCCCcchH----HH--HHHhcCC--c---------chHHH-----HHHHHHHHHHHH--H
Confidence 44688999999999985 7776544432 11 1112211 0 12222 344444433333 2
Q ss_pred hhhhhhhcCcceehhhhhhhhcccc
Q 018861 156 WRNVTRFLSPLSVVPLISLVGFGLY 180 (349)
Q Consensus 156 ~~~l~~~~Pp~V~g~~l~lIGl~l~ 180 (349)
...+.+++|..+.+.+++.++..+.
T Consensus 350 ~~~~l~~iP~~~la~ili~~~~~l~ 374 (563)
T TIGR00815 350 LTPLFYYIPQAALAAIIISAVRGLI 374 (563)
T ss_pred HHHHHHhChHHHHHHHHHHHHhccc
Confidence 3567899999999999998888765
No 26
>PRK11660 putative transporter; Provisional
Probab=59.67 E-value=54 Score=34.21 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 018861 75 QTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSG 154 (349)
Q Consensus 75 ~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg 154 (349)
..-+++-|++.++-+++| .+|.....+ -.. +..+.| -++-+.+++.+.++.+.+-+
T Consensus 314 n~EL~a~G~aNi~~~~fg-g~p~~~s~s----rSa--~n~~aG---------------arT~la~iv~a~~~ll~ll~-- 369 (568)
T PRK11660 314 NSELVGQGLGNIVAPFFG-GITATAAIA----RSA--ANVRAG---------------ATSPISAVIHALLVLLALLV-- 369 (568)
T ss_pred cHHHHHHhHHHHHHHHhC-cccccchHH----HHH--HHHhcC---------------CCcHHHHHHHHHHHHHHHHH--
Confidence 345688899999999985 777532211 111 221211 12233344444333333322
Q ss_pred hhhhhhhhcCcceehhhhhhhhccccc
Q 018861 155 LWRNVTRFLSPLSVVPLISLVGFGLYE 181 (349)
Q Consensus 155 ~~~~l~~~~Pp~V~g~~l~lIGl~l~~ 181 (349)
...+.+++|..+.+.+++.+|..+..
T Consensus 370 -l~~ll~~iP~~vLa~ili~~~~~m~~ 395 (568)
T PRK11660 370 -LAPLLSYLPLSAMAALLLMVAWNMSE 395 (568)
T ss_pred -HHHHHHhCcHHHHHHHHHHHHHHhhh
Confidence 35689999999999999999987754
No 27
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=59.23 E-value=79 Score=31.29 Aligned_cols=165 Identities=18% Similarity=0.284 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHH
Q 018861 34 WPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISII 113 (349)
Q Consensus 34 ~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~ 113 (349)
+...+-.++=-++....+--..-+.+.++.|.++.. ...+..+|+++++.+.+| ..++..+ ....++.
T Consensus 205 ~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~-----~~~~~~tGl~s~l~ApfG-g~~~nlA------aitaAIc 272 (378)
T PF03594_consen 205 WSALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPV-----NPLITVTGLASLLAAPFG-GHAVNLA------AITAAIC 272 (378)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCc-----hHHHHHHHHHHHHHhhhc-hhhhHHH------HHHHHHH
Confidence 444444555444333333333335555666666542 466688999999999886 3333222 1222333
Q ss_pred hhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhcCcceehhhhhhhhcccccc---cccC-cc
Q 018861 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGL-WRNVTRFLSPLSVVPLISLVGFGLYEF---GFPG-VA 188 (349)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~-~~~l~~~~Pp~V~g~~l~lIGl~l~~~---~~~~-~~ 188 (349)
.... .+.|++ .. .-+-+.+|++++++|++.- .-.+...+|+..+..+ -|+-+... .+.. +.
T Consensus 273 ~g~e---ah~dp~----rR----y~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~l---AGLALlg~l~~sl~~A~~ 338 (378)
T PF03594_consen 273 AGPE---AHPDPS----RR----YIAAVAAGVFYLLFGLFAAALVALFAALPPALIAAL---AGLALLGTLGGSLQTAFS 338 (378)
T ss_pred cCCc---cCCCcc----cc----hHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 2110 111111 12 2345678999999998642 4556777787665532 23322221 1111 11
Q ss_pred c--chhcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHH
Q 018861 189 K--CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYA 235 (349)
Q Consensus 189 ~--~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a 235 (349)
+ +-.-+++++++. ..++ .++...+..+|+++|+++.
T Consensus 339 ~~~~r~aAlvtFlvt------aSGi-----sl~gIgaafWgLv~G~~~~ 376 (378)
T PF03594_consen 339 DEKYREAALVTFLVT------ASGI-----SLLGIGAAFWGLVAGLLVH 376 (378)
T ss_pred CcchhHHHHHHHHHH------HcCC-----CcccccHHHHHHHHHHHHH
Confidence 1 223345554432 1322 3566789999999999865
No 28
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=53.71 E-value=76 Score=33.12 Aligned_cols=80 Identities=26% Similarity=0.451 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018861 78 LFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWR 157 (349)
Q Consensus 78 ~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~ 157 (349)
+++-|++.+.-+++| .+|.--+.+ -....+.+ | -++=+.+++-+.++.+++- +..
T Consensus 286 LiaqGiaNi~sglfg-g~p~~g~~s----rS~~nv~s--G---------------arT~lsgi~~a~~lll~l~---~~~ 340 (554)
T COG0659 286 LIAQGIANIASGLFG-GIPATGSIS----RSAINIKS--G---------------ARTRLSGIIHAALLLLLLL---FLA 340 (554)
T ss_pred HHHhhHHHHHHHHhC-CccccchhH----HHHHHHHh--C---------------CcChHHHHHHHHHHHHHHH---HHH
Confidence 478899999999985 788644332 22222221 1 1222333333333333322 246
Q ss_pred hhhhhcCcceehhhhhhhhcccccc
Q 018861 158 NVTRFLSPLSVVPLISLVGFGLYEF 182 (349)
Q Consensus 158 ~l~~~~Pp~V~g~~l~lIGl~l~~~ 182 (349)
.+..++|..+.+.+++.+|..++..
T Consensus 341 ~~~~~IP~a~Laavli~v~~~l~~~ 365 (554)
T COG0659 341 PLVSYIPLAALAAVLILVGWGLLDW 365 (554)
T ss_pred HHHHhCcHHHHHHHHHHHHHHhccH
Confidence 7799999999999999999887753
No 29
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=49.62 E-value=57 Score=32.36 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 018861 74 IQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS 153 (349)
Q Consensus 74 i~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~t 153 (349)
+...+.+.|+++++-+++| ..|... |..... +.+..+. +. --+.+++|++.+++++.
T Consensus 255 ~~~~l~~~Gi~~i~aglfG-~~p~t~-----~~~~~~-~~~~tg~---------------~s-r~~~~~~~~~lil~~l~ 311 (406)
T TIGR03173 255 LAGGLRADGLGSALGGLFN-TFPYTS-----FSQNVG-LVQLTGV---------------KS-RYVVAAAGVILVLLGLF 311 (406)
T ss_pred ccchHHhccHHHHHHHHhC-CCCCcc-----hhhhHH-HHHHhCC---------------Cc-hHhHHHHHHHHHHHHHH
Confidence 3677899999999999987 577421 111110 1111110 11 12236788888888887
Q ss_pred hhhhhhhhhcCcceehhh
Q 018861 154 GLWRNVTRFLSPLSVVPL 171 (349)
Q Consensus 154 g~~~~l~~~~Pp~V~g~~ 171 (349)
+....+.+.+|..|.+.+
T Consensus 312 ~~~~~l~~~iP~~vlgg~ 329 (406)
T TIGR03173 312 PKLAALVASIPQPVLGGA 329 (406)
T ss_pred HHHHHHHHhCCHHHHHHH
Confidence 767999999999888763
No 30
>PRK03699 putative transporter; Provisional
Probab=48.00 E-value=91 Score=30.11 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=23.8
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
.|..+.+..|+|+++...+.+.-.+...++.++-+.
T Consensus 228 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~ 263 (394)
T PRK03699 228 VPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSF 263 (394)
T ss_pred HHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHH
Confidence 577776667999887666555444555666666555
No 31
>PHA03255 BDLF3; Provisional
Probab=45.98 E-value=34 Score=29.86 Aligned_cols=36 Identities=25% Similarity=0.555 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCChHHHHHHHHHHHHH
Q 018861 8 KADEPLPHPAKDQLPSISYCITSPPPWPEAILLGFQHYIV 47 (349)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~glQ~~l~ 47 (349)
|-...+|.||+||+++..|++ |++..++-||...+.
T Consensus 162 ~ttaelpt~pdekqps~~~gl----plwtlvfvgltflml 197 (234)
T PHA03255 162 KTTAELPTVPDERQPSLSYGL----PLWTLVFVGLTFLML 197 (234)
T ss_pred cccccCCCCCcccCcccccCc----hHHHHHHHHHHHHHH
Confidence 445567888999999999876 688899999875443
No 32
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=44.38 E-value=43 Score=33.82 Aligned_cols=77 Identities=10% Similarity=0.010 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 018861 73 VIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGF 152 (349)
Q Consensus 73 li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~ 152 (349)
-+..++.+-|++|++-+++| ..|...=+....+. .++. . .---.+.++|++.+++|+
T Consensus 276 ~l~rgi~~dGi~s~laglfg-~~p~tt~sqNvGvi---~~Tg-V------------------~SR~v~~~aa~ilillgl 332 (433)
T PRK11412 276 RYRRSFVATGFMTLITVPLA-VIPFSPFVSSIGLL---TQTG-D------------------YRRRSFIYGSVMCLLVAL 332 (433)
T ss_pred ccccchhhccHHHHHHHhcC-CCCCCchhhhhhhh---hhcC-C------------------chhHHHHHHHHHHHHHHH
Confidence 34678899999999999886 55542212111111 1110 0 002245677888899999
Q ss_pred hhhhhhhhhhcCcceehhhh
Q 018861 153 SGLWRNVTRFLSPLSVVPLI 172 (349)
Q Consensus 153 tg~~~~l~~~~Pp~V~g~~l 172 (349)
++-+..+...+|..|.|...
T Consensus 333 ~PK~~alia~IP~pVlGg~~ 352 (433)
T PRK11412 333 IPALTRLFCSIPLPVSSAVM 352 (433)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 88889999999998887643
No 33
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=42.67 E-value=2.6e+02 Score=27.76 Aligned_cols=72 Identities=15% Similarity=0.061 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCCcccccCCCCChHHHHHHHHHHHHHHHh---hhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 018861 12 PLPHPAKDQLPSISYCITSPPPWPEAILLGFQHYIVMLG---TTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQ 88 (349)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~glQ~~l~~~~---~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq 88 (349)
|+..||.++++|..| .|.......+-++..... ..+..|-+. +..|.++++.....+..++..+++..+.
T Consensus 2 ~~~~~~~~~~~~~~~------~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~ 74 (455)
T TIGR00892 2 PPALPPEGPPPDGGW------GWVVLGATFVSIGFSYAFPKAVTVFFKELQ-QIFQATYSETAWISSIMLAVLYAGGPIS 74 (455)
T ss_pred CCCCCCCCCCCCCCc------chHHHHHHHHHHHHHHhhhcchhhhHHHHH-HHhCcchhHHHHHHHHHHHHHHHhhHHH
Confidence 566777777666666 343333332222221111 112234333 4479998887777666666667777776
Q ss_pred HH
Q 018861 89 SL 90 (349)
Q Consensus 89 ~~ 90 (349)
+.
T Consensus 75 G~ 76 (455)
T TIGR00892 75 SI 76 (455)
T ss_pred HH
Confidence 65
No 34
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=41.60 E-value=4e+02 Score=27.13 Aligned_cols=82 Identities=9% Similarity=-0.021 Sum_probs=47.6
Q ss_pred CCCCCcccccCC-CCChHHHHHHHHHHHHHHHhhhhhh----HHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH---
Q 018861 19 DQLPSISYCITS-PPPWPEAILLGFQHYIVMLGTTVLI----PTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL--- 90 (349)
Q Consensus 19 ~~~~~~~~~~~~-~~p~~~~~~~glQ~~l~~~~~~i~~----p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~--- 90 (349)
=+|+|..|.=++ |.--++.+....-.+..++..-... +.+....+|++++|...+.+.-.+..++.-+..+.
T Consensus 16 w~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~D 95 (462)
T PRK15034 16 WKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVP 95 (462)
T ss_pred CCCCChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345655555443 3334456666655555555432222 22222248999999877777677777777566664
Q ss_pred -hCCCcceeec
Q 018861 91 -FGTRLPAVMG 100 (349)
Q Consensus 91 -~G~rlPi~~g 100 (349)
+|.|..+..+
T Consensus 96 r~G~R~v~~~~ 106 (462)
T PRK15034 96 IFGGRRWTVFS 106 (462)
T ss_pred HhCChHHHHHH
Confidence 6888765444
No 35
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=40.19 E-value=67 Score=30.35 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=21.3
Q ss_pred hhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 54 LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 54 ~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
..|..+.+..|.++++...+.....+...++.++-++
T Consensus 228 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 264 (385)
T TIGR00710 228 GAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGR 264 (385)
T ss_pred cChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3576666667888876655544444444444444444
No 36
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=39.80 E-value=95 Score=30.96 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 018861 74 IQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS 153 (349)
Q Consensus 74 i~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~t 153 (349)
+...+++-|+++++-+++| ..|.-.-. .. ..+...- +-..-. +..++|++.+++++.
T Consensus 271 ~~r~l~adGl~~i~aglfG-~~p~t~~s-----en-~g~~~~T---------------~~~sr~-~~~~~a~~~i~~~l~ 327 (415)
T TIGR00801 271 LHRGVLADGLATLLAGLFG-GFPNTTFA-----QN-IGVIALT---------------RVASRW-VIVGAAVILIALGFF 327 (415)
T ss_pred ccchHHHhhHHHHHHHhcC-CCCCcchh-----hh-heeeeec---------------CCCchH-HHHHHHHHHHHHHHH
Confidence 3678899999999999987 47652211 10 0011000 111112 567888888999998
Q ss_pred hhhhhhhhhcCcceehhhh
Q 018861 154 GLWRNVTRFLSPLSVVPLI 172 (349)
Q Consensus 154 g~~~~l~~~~Pp~V~g~~l 172 (349)
.-+..+.+.+|..|.|...
T Consensus 328 pk~~~l~~~iP~~vlgg~~ 346 (415)
T TIGR00801 328 PKIAALITSIPSPVLGGAS 346 (415)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 6689999999988887544
No 37
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=39.73 E-value=66 Score=24.63 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhhHHHhhhc--CCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeecCcc
Q 018861 33 PWPEAILLGFQHYIVMLGTTVLIPTSLVPQ--MGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSY 103 (349)
Q Consensus 33 p~~~~~~~glQ~~l~~~~~~i~~p~il~~a--~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~ 103 (349)
.+++.+.+|+.-.+.. +|..++-+ .|+++. ..+.++.+..++.+++|.+.-++.||+.
T Consensus 15 ~~~~D~~aGltva~~~------iPq~~a~A~lAg~pp~-------~GLy~a~~~~liyalfG~s~~~~~Gp~a 74 (84)
T PF13792_consen 15 NLRGDLLAGLTVALVA------IPQGMAYALLAGVPPI-------YGLYAAIIPPLIYALFGSSRHMIVGPTA 74 (84)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHcCCCCC-------eeeHHHHHHHHHHhhccCCCccccChHH
Confidence 4688999999865554 44444332 688884 6677888888899999888888888864
No 38
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=38.92 E-value=2.3e+02 Score=26.39 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=22.5
Q ss_pred hhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 54 LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 54 ~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
..|..+.+..|.++++...+.....+...++.++.++
T Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (394)
T TIGR00883 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGA 277 (394)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566665667888877665555555555555555554
No 39
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=37.42 E-value=3.5e+02 Score=25.27 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=12.8
Q ss_pred hHHHhhhcCCCChHHHHHHH
Q 018861 55 IPTSLVPQMGGGNEEKAKVI 74 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li 74 (349)
.|..+.+..|.++++...+.
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~ 241 (375)
T TIGR00899 222 MPLLIIHELGLPDKLAGLMM 241 (375)
T ss_pred hHHHHHHHcCCCHHHHHHHH
Confidence 46666566788887665443
No 40
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=35.96 E-value=4.1e+02 Score=25.67 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=21.7
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~ 91 (349)
.|... +..|+++++...+.....+..-++.++.+..
T Consensus 240 ~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l 275 (394)
T PRK10213 240 RPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFI 275 (394)
T ss_pred HHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35554 4468998766555544445556666666654
No 41
>PRK03893 putative sialic acid transporter; Provisional
Probab=35.44 E-value=4.2e+02 Score=26.17 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=30.4
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcce
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPA 97 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi 97 (349)
.|.+. +.+|+|+++...+.+...+...++.++.+. +|.|.-+
T Consensus 43 ~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 88 (496)
T PRK03893 43 LTEVQ-GEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAM 88 (496)
T ss_pred HHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 34443 457999998888888888888888888875 5655433
No 42
>PRK11663 regulatory protein UhpC; Provisional
Probab=34.70 E-value=3.4e+02 Score=26.56 Aligned_cols=37 Identities=11% Similarity=0.298 Sum_probs=27.8
Q ss_pred hhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 53 i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
...|.+..+ .|+++.|...+.+...+..+++.++-++
T Consensus 44 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~ 80 (434)
T PRK11663 44 AAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGI 80 (434)
T ss_pred HhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 445665544 7999998888877777888888888776
No 43
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=34.57 E-value=1.4e+02 Score=32.33 Aligned_cols=38 Identities=5% Similarity=0.007 Sum_probs=29.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceee
Q 018861 62 QMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVM 99 (349)
Q Consensus 62 a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi~~ 99 (349)
..|+++.+...+.+..++...+++++.++ +|.|..++.
T Consensus 196 ~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii 237 (742)
T TIGR01299 196 DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI 237 (742)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 37999988888888888888999988886 565544433
No 44
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=33.98 E-value=1.3e+02 Score=28.96 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=33.9
Q ss_pred hhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceeec
Q 018861 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (349)
Q Consensus 53 i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi~~g 100 (349)
...|..+.+..|.++.+.....+...+...++..+-+. +|.|..+..+
T Consensus 36 ~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~ 87 (399)
T PRK05122 36 AVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG 87 (399)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH
Confidence 34455556668999998888888888888888888775 4655554443
No 45
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=33.92 E-value=2.3e+02 Score=27.39 Aligned_cols=36 Identities=11% Similarity=0.292 Sum_probs=23.1
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~ 91 (349)
.|..+.+ .|.+.++...+.....+...+++++.++.
T Consensus 228 lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l 263 (393)
T PRK09705 228 LPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAM 263 (393)
T ss_pred HHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4666666 69998876666555555556666666654
No 46
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=31.97 E-value=94 Score=28.69 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=24.3
Q ss_pred hhhhhHHHhhhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 51 TTVLIPTSLVPQMGGG-NEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 51 ~~i~~p~il~~a~gl~-~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
.....|..+.+..|.+ ..+...+.....+...++.++.+.
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (352)
T PF07690_consen 225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGR 265 (352)
T ss_dssp HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666667888 666665555555555555555554
No 47
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=31.53 E-value=2.5e+02 Score=27.71 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=31.1
Q ss_pred hhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCccee
Q 018861 54 LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAV 98 (349)
Q Consensus 54 ~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi~ 98 (349)
..|.+. +. |+++.+.....+...+...++.++.+. +|.|..+.
T Consensus 51 ~~p~l~-~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~ 97 (452)
T PRK11273 51 AMPYLV-EQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP 97 (452)
T ss_pred hhHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHH
Confidence 456544 44 999998888888888888888888876 56665443
No 48
>PRK03545 putative arabinose transporter; Provisional
Probab=30.79 E-value=1.7e+02 Score=27.99 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=20.7
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018861 56 PTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTR 94 (349)
Q Consensus 56 p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~r 94 (349)
|..+.+..|.++.+...+.....+...+++++.+++..|
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr 267 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR 267 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333445568887765554444444455555555554333
No 49
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=30.50 E-value=4.3e+02 Score=26.52 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=36.1
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 31 PPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 31 ~~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
++.+.......+.............|.-+.+..|.|+.+....+....+.+.+++.+-+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~ 317 (495)
T PRK14995 258 HRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGI 317 (495)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555554444455677776667999988776665555666666666554
No 50
>PRK10091 MFS transport protein AraJ; Provisional
Probab=29.98 E-value=1.6e+02 Score=28.26 Aligned_cols=34 Identities=12% Similarity=0.030 Sum_probs=20.6
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 018861 58 SLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (349)
Q Consensus 58 il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~ 91 (349)
.+.+..|.++++...+.....+...++.++.+++
T Consensus 225 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l 258 (382)
T PRK10091 225 YMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRL 258 (382)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHhee
Confidence 3444468888876665555555555666665553
No 51
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=29.18 E-value=2.8e+02 Score=26.00 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=21.1
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
.|..+.+ .|.|.++...+.....+...+++++-++
T Consensus 220 lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~ 254 (355)
T TIGR00896 220 LPAILIS-HGASAATAGSLLALMQLAQAASALLIPA 254 (355)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4666655 5888876665555555555555555554
No 52
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=29.00 E-value=4.3e+02 Score=24.82 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=32.5
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceeec
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi~~g 100 (349)
.|.+ .+..|+++.|...+.+...+...++.++.+. +|.|.++..+
T Consensus 35 ~~~l-~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 83 (405)
T TIGR00891 35 LAEV-AGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTS 83 (405)
T ss_pred HHHH-HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3443 3447999998888888888888888888876 5666665544
No 53
>PRK10133 L-fucose transporter; Provisional
Probab=28.90 E-value=3.7e+02 Score=26.62 Aligned_cols=49 Identities=10% Similarity=0.141 Sum_probs=35.3
Q ss_pred hhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceeec
Q 018861 51 TTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (349)
Q Consensus 51 ~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi~~g 100 (349)
.....|.+ .+.+|+|+.+...++..-.+...++.+..+. +|.|..+..+
T Consensus 45 ~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g 97 (438)
T PRK10133 45 NDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG 97 (438)
T ss_pred HHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 33456765 5668999999888888888888888888775 5766555444
No 54
>TIGR00893 2A0114 d-galactonate transporter.
Probab=28.78 E-value=1.6e+02 Score=27.29 Aligned_cols=36 Identities=22% Similarity=0.123 Sum_probs=21.1
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
.|..+.+..|.++.+...+.....+...++.++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (399)
T TIGR00893 238 FPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGR 273 (399)
T ss_pred HHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 466666667888776655544444444455555554
No 55
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=27.92 E-value=1.8e+02 Score=27.82 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=19.8
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
.|....+..|+++++...+.....+.+.++.++-++
T Consensus 226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~ 261 (392)
T PRK10473 226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPF 261 (392)
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555667888876655444444444444444443
No 56
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=27.02 E-value=1.8e+02 Score=27.23 Aligned_cols=33 Identities=9% Similarity=0.000 Sum_probs=17.7
Q ss_pred hhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHH
Q 018861 54 LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTL 86 (349)
Q Consensus 54 ~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tl 86 (349)
..|..+.+..|.++.+...+.....+...++++
T Consensus 247 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T TIGR00886 247 IFAMFFKDQFGLSKVTAGAYASLGGLLGSLARP 279 (366)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhh
Confidence 346666666788887665444333333333333
No 57
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=26.34 E-value=5.1e+02 Score=23.74 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=23.1
Q ss_pred hhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 53 i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
...|....+..|.++.+...+.....+...+++++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGL 269 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577776657888877665554444445555555554
No 58
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=25.69 E-value=2.2e+02 Score=26.43 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=22.5
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
.|..+.+..|.++++...+.....+...++.++.++
T Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 274 (379)
T TIGR00881 239 SPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGW 274 (379)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHH
Confidence 466666667888877665554444555566666554
No 59
>PRK11715 inner membrane protein; Provisional
Probab=25.50 E-value=3.7e+02 Score=27.18 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018861 131 RTMRAIQGSLIVASTLQIVLGFSGLWRN 158 (349)
Q Consensus 131 ~~~~~~~ga~lisGll~~llg~tg~~~~ 158 (349)
+.+..++|++.+-.++-+++-+||-.+|
T Consensus 407 EDyALL~GSllLF~~La~vM~~TR~iDW 434 (436)
T PRK11715 407 EDYALLLGSLLLFAVLALVMFLTRRIDW 434 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHheeecccc
Confidence 4677889988888888777777764444
No 60
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=25.29 E-value=2.2e+02 Score=27.26 Aligned_cols=19 Identities=21% Similarity=-0.066 Sum_probs=11.8
Q ss_pred hHHHhhhcCCCChHHHHHHH
Q 018861 55 IPTSLVPQMGGGNEEKAKVI 74 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li 74 (349)
.+..+.+ .|.++++...+.
T Consensus 231 ~~~~l~~-~G~s~~~ig~~~ 249 (390)
T TIGR02718 231 SKLYLVD-AGWPLEWIGRLG 249 (390)
T ss_pred hhHHHHh-cCCCHHHHHHHH
Confidence 3445555 599998765443
No 61
>PRK03545 putative arabinose transporter; Provisional
Probab=25.08 E-value=6e+02 Score=24.16 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHHHHHHHhhhhh---hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcce
Q 018861 33 PWPEAILLGFQHYIVMLGTTVL---IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPA 97 (349)
Q Consensus 33 p~~~~~~~glQ~~l~~~~~~i~---~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi 97 (349)
.|.+.....+-.++......+. .|. +.+.+|++++|.....+...+..+++.+..+. +|.|..+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 77 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLL 77 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 3445555555544433222222 244 34558999998877777666677777777665 4545433
No 62
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=24.99 E-value=3.6e+02 Score=26.45 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 32 PPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 32 ~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
+.+.......+...+.........|..+.+..|.++.+...+.....+...+++++.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 313 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGR 313 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455687777778999887655544444444455555544
No 63
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=24.62 E-value=4.6e+02 Score=25.11 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHH--hhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 34 WPEAILLGFQHYIVMLGTTVLIPTS--LVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 34 ~~~~~~~glQ~~l~~~~~~i~~p~i--l~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
+...+...+-+++..+......|.. +.+.+|.|+++.....+...+...++.++.+.
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~ 70 (406)
T PRK15402 12 LLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGP 70 (406)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554333323333322 33558999988877777777777777777764
No 64
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=23.86 E-value=1.3e+02 Score=29.67 Aligned_cols=83 Identities=25% Similarity=0.353 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 018861 72 KVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLG 151 (349)
Q Consensus 72 ~li~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg 151 (349)
.-+..++..-|++|++-+++|. .|...- .-..-.+. .-+. .+ -=..+.++++.++++
T Consensus 267 ~~~~r~l~~dg~~~~l~gl~G~-~~~t~~-----~en~g~i~-~t~v------------~S----r~~~~~a~~~~i~~~ 323 (389)
T PF00860_consen 267 PRIRRGLLADGLGTILAGLFGT-SPTTTY-----SENAGGIA-ATGV------------AS----RRVGLTAGVILILFG 323 (389)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT----EEE------HHHHHHHH-HHTB------------------HHHHHHHHHHHHHHT
T ss_pred hhhcccceeeeeeeeechhhcC-CCCccc-----cccchhhh-hhcc------------cc----ceeeeHHHHHHHHHh
Confidence 3357889999999999999985 554222 22111111 1110 01 124566777788899
Q ss_pred hhhhhhhhhhhcCccee-hhhhhhhhc
Q 018861 152 FSGLWRNVTRFLSPLSV-VPLISLVGF 177 (349)
Q Consensus 152 ~tg~~~~l~~~~Pp~V~-g~~l~lIGl 177 (349)
+...+..+...+|..|. |..+.+.|.
T Consensus 324 ~~p~~~~l~~~IP~~v~gg~~lv~~g~ 350 (389)
T PF00860_consen 324 LSPKFAPLFASIPSPVIGGPLLVLFGM 350 (389)
T ss_dssp --HHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 88778999999998885 454555554
No 65
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=23.49 E-value=4.1e+02 Score=26.89 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018861 131 RTMRAIQGSLIVASTLQIVLGFSGLWRN 158 (349)
Q Consensus 131 ~~~~~~~ga~lisGll~~llg~tg~~~~ 158 (349)
+.+..++|++.+-.++-+++-+||-++|
T Consensus 401 EdyALL~GSl~LF~iLa~vM~~TRkiDW 428 (430)
T PF06123_consen 401 EDYALLMGSLLLFIILALVMYLTRKIDW 428 (430)
T ss_pred hhHHHHHHHHHHHHHHHHHHheeecccc
Confidence 4677889998888888888877764444
No 66
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=23.05 E-value=3.5e+02 Score=26.90 Aligned_cols=41 Identities=20% Similarity=0.478 Sum_probs=29.3
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHH
Q 018861 31 PPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKV 73 (349)
Q Consensus 31 ~~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~l 73 (349)
+..|...+..|+|.+.+-....- .|-++.+. |+|+++...+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~W-LP~ili~~-G~sa~~aG~l 248 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGW-LPAILIDR-GLSAAEAGSL 248 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHH-HHHHHHHc-CCCHHHhhhH
Confidence 33799999999999987554433 46666664 9999865444
No 67
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=22.83 E-value=5.9e+02 Score=23.75 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=24.4
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
.|.+ .+..|.|+++.....+...+...++.++-+.
T Consensus 28 ~p~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 62 (385)
T TIGR00710 28 FPEI-AADLSTPASIVQMTLTLYLLGFAAGQLLWGP 62 (385)
T ss_pred HHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444 4457999988877777667777777777664
No 68
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=22.52 E-value=2.7e+02 Score=27.23 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=22.1
Q ss_pred hhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018861 52 TVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQS 89 (349)
Q Consensus 52 ~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~ 89 (349)
....|.++.+..|.++.+..........+..+++.+..
T Consensus 238 ~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~ 275 (413)
T PRK15403 238 VAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVA 275 (413)
T ss_pred HHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468888777789988765543333334444444444
No 69
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=22.02 E-value=2.5e+02 Score=28.04 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=40.2
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHhhhh-hhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 018861 24 ISYCITSPPPWPEAILLGFQHYIVMLGTTV-LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRL 95 (349)
Q Consensus 24 ~~~~~~~~~p~~~~~~~glQ~~l~~~~~~i-~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~G~rl 95 (349)
..+++-.||.....+..-+-.+...+...- +-|++. +..|+|.++. +-.++..|++.++-.++|.|+
T Consensus 203 ~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~-~v~g~s~~~v----s~~Ll~~Gv~~~~Gn~~gGrl 270 (394)
T COG2814 203 TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLE-SVAGFSVSAV----SLVLLAFGIAGFIGNLLGGRL 270 (394)
T ss_pred HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHH-HccCCCHhHH----HHHHHHHHHHHHHHHHHHhhh
Confidence 366777788665555555444433333222 245554 4468887644 566788888888877765554
No 70
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=21.62 E-value=5.8e+02 Score=23.88 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=23.6
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
.|..+.+..|+++++...+.....+...+++++.++
T Consensus 261 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~ 296 (405)
T TIGR00891 261 LPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGF 296 (405)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565667899887766665555556666666665
No 71
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=21.14 E-value=1.8e+02 Score=27.52 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=19.6
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 56 PTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 56 p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
|....+..|.++++...+.....+...++.++-++
T Consensus 218 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 252 (377)
T PRK11102 218 PFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSR 252 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54555557888877655554444444444444443
No 72
>PRK15011 sugar efflux transporter B; Provisional
Probab=21.14 E-value=7.3e+02 Score=23.71 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=20.8
Q ss_pred hhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 54 LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 54 ~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
..|..+.+..|+|+.+...+......+.-++.++.++
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~ 274 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGY 274 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667898876655544333433344455554
No 73
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=21.13 E-value=4e+02 Score=26.63 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcce
Q 018861 71 AKVIQTLLFVAGLNTLLQSLFGTRLPA 97 (349)
Q Consensus 71 ~~li~at~~~~Gi~tllq~~~G~rlPi 97 (349)
...+++.-|+.++++++-+.+|+|+|.
T Consensus 349 eL~Lt~gT~~~s~~~~va~ifGMNl~~ 375 (414)
T KOG2662|consen 349 ELLLTIGTFCLSVFSVVAGIFGMNLPS 375 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 356778888999999999999999997
No 74
>PRK11663 regulatory protein UhpC; Provisional
Probab=20.67 E-value=3.2e+02 Score=26.81 Aligned_cols=37 Identities=5% Similarity=-0.059 Sum_probs=24.4
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~ 91 (349)
.|..+.+..|+|.++.........+...++.++.+++
T Consensus 266 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l 302 (434)
T PRK11663 266 GNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWG 302 (434)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4666666679998876655555555566667776654
No 75
>PRK09528 lacY galactoside permease; Reviewed
Probab=20.59 E-value=3.7e+02 Score=25.99 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceee
Q 018861 31 PPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVM 99 (349)
Q Consensus 31 ~~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi~~ 99 (349)
++........-+...++.....-..|.-+.+..|+++.|.....+...+...++..+.+. +|.|..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~ 81 (420)
T PRK09528 9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLW 81 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 344444444444444433222333466666668999999988888888888888888886 576665543
No 76
>PRK10489 enterobactin exporter EntS; Provisional
Probab=20.49 E-value=7.7e+02 Score=23.69 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCcccc----cCCCCChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHH
Q 018861 10 DEPLPHPAKDQLPSISYC----ITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNT 85 (349)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~----~~~~~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~t 85 (349)
++++++..++++.+...+ +.+++.++..+..++..... .......|..+.+..|+++.+...+.....+...++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~ 276 (417)
T PRK10489 198 ALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLTMA-SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGA 276 (417)
T ss_pred CCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHH
Q ss_pred HHHHHhCCCcceeecCccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCc
Q 018861 86 LLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSP 165 (349)
Q Consensus 86 llq~~~G~rlPi~~g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp 165 (349)
++..++..|...-..-....+..........-. ..+..+....++.|+.......... ..+.+.+|+
T Consensus 277 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~ 343 (417)
T PRK10489 277 LTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM------------PMWILAVLCLALFGYLSAISSLLQY-TLLQTQTPD 343 (417)
T ss_pred HHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc------------chHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCH
Q ss_pred ceehhhhhhhh
Q 018861 166 LSVVPLISLVG 176 (349)
Q Consensus 166 ~V~g~~l~lIG 176 (349)
..-|.......
T Consensus 344 ~~~g~~~g~~~ 354 (417)
T PRK10489 344 EMLGRINGLWT 354 (417)
T ss_pred HHHHHHHHHHH
No 77
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=20.04 E-value=2.1e+02 Score=26.29 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 018861 76 TLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGL 155 (349)
Q Consensus 76 at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg~ 155 (349)
.=+++.|++.++-+++| .+|...+-|-..+. . +.|. +.=..+++.+.++.+++-+
T Consensus 183 ~El~a~G~aNi~s~~~g-g~p~~~s~srs~~~----~--~~Ga---------------~t~~s~~~~~~~~l~~l~~--- 237 (280)
T PF00916_consen 183 QELIALGLANIVSGLFG-GMPGSGSFSRSAVN----Y--RAGA---------------RTRLSGLISALFVLLVLLF--- 237 (280)
T ss_pred HHHHHhhhccccchhhc-ccccccccccchHH----H--hcCc---------------ceeehhHHHHHHHHHHHHH---
Confidence 44578899999999986 88876554422111 1 1111 1112222222222222222
Q ss_pred hhhhhhhcCcceehhhhhhhhcccc
Q 018861 156 WRNVTRFLSPLSVVPLISLVGFGLY 180 (349)
Q Consensus 156 ~~~l~~~~Pp~V~g~~l~lIGl~l~ 180 (349)
...+.+++|..+.+.+++.+|..+.
T Consensus 238 ~~~~l~~iP~~~La~ili~~~~~l~ 262 (280)
T PF00916_consen 238 LAPLLAYIPKAVLAAILIVVGISLI 262 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567889999999999988887654
Done!