Query 018861
Match_columns 349
No_of_seqs 133 out of 1353
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 07:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 2.3E-47 7.8E-52 377.5 21.9 273 22-348 2-289 (429)
2 1pw4_A Glycerol-3-phosphate tr 60.9 69 0.0024 29.4 11.3 38 53-90 273-310 (451)
3 3o7q_A L-fucose-proton symport 46.7 1E+02 0.0035 28.1 9.9 97 55-166 49-149 (438)
4 3o7q_A L-fucose-proton symport 41.4 52 0.0018 30.2 6.9 61 30-90 256-317 (438)
5 1bts_A BAND 3 anion transport 40.2 10 0.00035 21.6 1.0 24 322-345 3-26 (26)
6 3qe7_A Uracil permease; uracil 32.3 1E+02 0.0035 29.5 7.4 74 75-171 264-337 (429)
7 1pw4_A Glycerol-3-phosphate tr 29.4 82 0.0028 28.9 6.1 55 34-90 27-84 (451)
8 2gfp_A EMRD, multidrug resista 23.3 31 0.001 31.2 1.8 37 55-91 222-258 (375)
9 4aps_A DI-OR tripeptide H+ sym 22.2 3.1E+02 0.011 25.3 8.8 37 54-90 35-76 (491)
10 2gfp_A EMRD, multidrug resista 14.2 6.2E+02 0.021 22.1 10.4 43 55-98 23-69 (375)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=2.3e-47 Score=377.46 Aligned_cols=273 Identities=21% Similarity=0.383 Sum_probs=239.3
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCCcceeec
Q 018861 22 PSISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF-GTRLPAVMG 100 (349)
Q Consensus 22 ~~~~~~~~~~~p~~~~~~~glQ~~l~~~~~~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~-G~rlPi~~g 100 (349)
.|+.|++|||+|+++++.+|+||+++|+++++++|+++ |+|++ ++++++|++|++|+++ |+|+|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~~-------~~l~~agi~Tllq~~~~~~~lP~~~G 70 (429)
T 3qe7_A 2 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINPA-------TVLLFNGIGTLLYLFICKGKIPAYLG 70 (429)
T ss_dssp --CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCHH-------HHHHHHHHHHHHHHHHTTTCCCCCEE
T ss_pred CCcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCHH-------HHHHHHHHHHHHHHHHcCCCCCeEec
Confidence 36789999999999999999999999999999999997 88874 7999999999999986 899999999
Q ss_pred CccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhh--hhh-hhhhhhcCcceehhhhhhhhc
Q 018861 101 GSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS--GLW-RNVTRFLSPLSVVPLISLVGF 177 (349)
Q Consensus 101 ~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~t--g~~-~~l~~~~Pp~V~g~~l~lIGl 177 (349)
+||+|+.++..+.. ++|++++|+++++|+++++++++ |++ +|++|+|||+|+|.++++||+
T Consensus 71 ~sfafi~~~~~i~~----------------~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl 134 (429)
T 3qe7_A 71 SSFAFISPVLLLLP----------------LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGL 134 (429)
T ss_dssp ECGGGHHHHHHHGG----------------GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh----------------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHH
Confidence 99999998876643 26999999999999999999987 654 799999999999999999999
Q ss_pred ccccccccCcc-----------cchhcHHHHHHHHHHHHHHhccchhcccccchhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 018861 178 GLYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYND 246 (349)
Q Consensus 178 ~l~~~~~~~~~-----------~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~aiLigi~vg~i~a~~~g~~~~~~~ 246 (349)
++++.++++.+ .++.++++++++++++.++. |+++|++++|+|+++||++++.+|.
T Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~-------kg~~~~~aiLigivvg~~~a~~~G~------ 201 (429)
T 3qe7_A 135 ELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLF-------RGFLAIIPILIGVLVGYALSFAMGI------ 201 (429)
T ss_dssp HHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSS-------STTTTTHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHh-------cccchhhHHHHHHHHHHHHHHHhcC------
Confidence 99887764322 24678888888887777655 4578899999999999999999987
Q ss_pred CCcccccccccCccCcCCCCCceecCCCCCCCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccch
Q 018861 247 AAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGV 326 (349)
Q Consensus 247 ~~~~~~~~~~~d~~~~i~~~~~~~~P~~~~fg~P~f~~~~l~~~~~~~iv~~~es~g~~~a~~~~~~~~~~~~~~~~r~l 326 (349)
.|+++ +.+++|+++|. |+.|+||++.+..++++++++++|++|++.++++.++++..++++.||++
T Consensus 202 ----------~d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l 267 (429)
T 3qe7_A 202 ----------VDTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSM 267 (429)
T ss_dssp ----------TTSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHH
T ss_pred ----------CCccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHH
Confidence 35543 56678999995 56799999999999999999999999999999999986554678999999
Q ss_pred hhhhHHHHHhhhcCCCCCCccc
Q 018861 327 GWQGVGILLSGLFGTVNGTSVS 348 (349)
Q Consensus 327 ~a~Gl~~ilaglfG~~p~t~~s 348 (349)
.+||++|+++|+||++|+|+|+
T Consensus 268 ~adGla~i~~glfGg~p~Tt~~ 289 (429)
T 3qe7_A 268 FANGLSTVISGFFGSTPNTTYG 289 (429)
T ss_dssp HHHHHHHHHHHHHTCCCEEECH
T ss_pred HHHHHHHHHHHhcCCCCcchHH
Confidence 9999999999999999999986
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=60.91 E-value=69 Score=29.39 Aligned_cols=38 Identities=16% Similarity=-0.050 Sum_probs=26.2
Q ss_pred hhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 53 i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
...|..+.+..|.++.+...+.....+...++.++.++
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777768999987766666656666666666665
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=46.67 E-value=1e+02 Score=28.12 Aligned_cols=97 Identities=9% Similarity=-0.042 Sum_probs=53.1
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceeecCccchHHHHHHHHhhcccCCCCCCChhhhh
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFK 130 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi~~g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~ 130 (349)
.|. +.+..|+++.|...+.+...+...++.++.+. +|.|..++.+.....+.......... .
T Consensus 49 ~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-------------~ 114 (438)
T 3o7q_A 49 LPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------------I 114 (438)
T ss_dssp HHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-------------T
T ss_pred HHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-------------c
Confidence 344 44558999999888888888888888888876 46555544443221122111100000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcc
Q 018861 131 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPL 166 (349)
Q Consensus 131 ~~~~~~~ga~lisGll~~llg~tg~~~~l~~~~Pp~ 166 (349)
.++..+..+.++.|+-.-..-.. ....+.+.+|+.
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~ 149 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETA-ANPFVTVLGPES 149 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSCST
T ss_pred ccHHHHHHHHHHHHhhHHHhhhh-HHHHHHHHcCch
Confidence 24555566666666654333221 235667777764
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=41.42 E-value=52 Score=30.16 Aligned_cols=61 Identities=10% Similarity=-0.037 Sum_probs=34.1
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhhhHHH-hhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 30 SPPPWPEAILLGFQHYIVMLGTTVLIPTS-LVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 30 ~~~p~~~~~~~glQ~~l~~~~~~i~~p~i-l~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
.++.+...+...+-............|.. +.+..|.++++...+.....+...++.++-++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 256 RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333344666 66667999987776666555666666666655
No 5
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=40.17 E-value=10 Score=21.65 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=17.9
Q ss_pred cccchhhhhHHHHHhhhcCCCCCC
Q 018861 322 LSRGVGWQGVGILLSGLFGTVNGT 345 (349)
Q Consensus 322 ~~r~l~a~Gl~~ilaglfG~~p~t 345 (349)
+++.+++++++.++-++|++-|.+
T Consensus 3 v~E~i~s~ai~Gi~f~lf~gQPL~ 26 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGAXXXX 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred hhHHHHHHHHHHHHHHHHhcccCC
Confidence 467789999999999999998864
No 6
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=32.31 E-value=1e+02 Score=29.52 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCcceeecCccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 018861 75 QTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSG 154 (349)
Q Consensus 75 ~at~~~~Gi~tllq~~~G~rlPi~~g~s~a~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ga~lisGll~~llg~tg 154 (349)
...+.+-|++|++-+++| ..|.-. |....-.+.. -+. .+ +. +...+|++.+++++.+
T Consensus 264 ~r~l~adGla~i~~glfG-g~p~Tt-----~~en~g~i~~-tg~------------~s-r~---~~~~ag~~lillgl~p 320 (429)
T 3qe7_A 264 HRSMFANGLSTVISGFFG-STPNTT-----YGENIGVMAI-TRV------------YS-TW---VIGGAAIFAILLSCVG 320 (429)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCCEEE-----CHHHHHHHHH-HTB------------CC-HH---HHHHHHHHHHHHTCCH
T ss_pred chHHHHHHHHHHHHHhcC-CCCcch-----HHHhHHHHHh-cCC------------cc-hH---HHHHHHHHHHHHHHHH
Confidence 678899999999999997 566532 2221111111 111 01 11 4578888889999887
Q ss_pred hhhhhhhhcCcceehhh
Q 018861 155 LWRNVTRFLSPLSVVPL 171 (349)
Q Consensus 155 ~~~~l~~~~Pp~V~g~~ 171 (349)
.+..+...+|..|.|.+
T Consensus 321 k~~al~~~IP~~vlgg~ 337 (429)
T 3qe7_A 321 KLAAAIQMIPLPVMGGV 337 (429)
T ss_dssp HHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHccHHHHHHH
Confidence 67889999999888764
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=29.36 E-value=82 Score=28.85 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHhh---hhhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 34 WPEAILLGFQHYIVMLGT---TVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 34 ~~~~~~~glQ~~l~~~~~---~i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
++......+.+++..... ....|.+..+ . .++.+...+.+...+...++.++-+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~ 84 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGS 84 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHH
Confidence 333444445555444332 2234444433 5 88888777777777777888888775
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=23.35 E-value=31 Score=31.20 Aligned_cols=37 Identities=5% Similarity=-0.120 Sum_probs=17.6
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~ 91 (349)
.|..+.+..|.|+.+...+.....+..-++.++...+
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 258 (375)
T 2gfp_A 222 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRP 258 (375)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555545456666655444433333334444444433
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=22.24 E-value=3.1e+02 Score=25.33 Aligned_cols=37 Identities=5% Similarity=-0.019 Sum_probs=28.8
Q ss_pred hhHHHhhhc-----CCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 54 LIPTSLVPQ-----MGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 54 ~~p~il~~a-----~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
..|..+.+. .|+++.+...+.+...+...++.++.+.
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~ 76 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGF 76 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555 8999999888888888888888888875
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=14.17 E-value=6.2e+02 Score=22.08 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=30.1
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCccee
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAV 98 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi~ 98 (349)
.|.+ .+..|.|+++.....+...+...++.++-+. +|.|..+.
T Consensus 23 ~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 69 (375)
T 2gfp_A 23 IADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL 69 (375)
T ss_dssp HHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH
T ss_pred hHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 3443 4557999998887777777778888888776 46555444
Done!