Query 018861
Match_columns 349
No_of_seqs 133 out of 1353
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 07:11:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018861.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018861hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 47.1 11 0.00078 32.5 5.3 36 53-90 46-81 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 22.5 1.9E+02 0.014 23.6 10.5 37 55-91 272-308 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 18.3 63 0.0046 26.2 5.0 46 55-100 30-79 (417)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 7.0 1.7E+02 0.013 15.3 2.5 15 222-236 12-26 (32)
5 d2qlva1 d.129.6.2 (A:460-630) 3.7 2.2E+02 0.016 21.6 2.1 37 9-45 31-70 (171)
6 d2craa1 a.4.1.1 (A:7-64) Homeo 2.4 4.3E+02 0.032 15.7 2.1 18 59-76 34-51 (58)
7 d1zs4a1 a.35.1.9 (A:4-81) Regu 2.3 2.2E+02 0.016 18.6 0.4 15 215-229 41-55 (78)
8 d2au5a1 a.244.1.1 (A:1-132) Hy 2.3 3.3E+02 0.024 19.0 1.5 22 27-48 47-68 (132)
9 d1le8a_ a.4.1.1 (A:) Mating ty 2.1 4.8E+02 0.035 15.0 2.0 17 59-75 30-46 (53)
10 d1p7ia_ a.4.1.1 (A:) Engrailed 2.1 4.2E+02 0.031 15.3 1.6 17 59-75 32-48 (53)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=47.13 E-value=11 Score=32.51 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=27.9
Q ss_pred hhhHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 018861 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (349)
Q Consensus 53 i~~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~ 90 (349)
++.|.+ .+ .|++++|...+.+...+..++++++-+.
T Consensus 46 ~~~p~~-~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~ 81 (447)
T d1pw4a_ 46 LAMPYL-VE-QGFSRGDLGFALSGISIAYGFSKFIMGS 81 (447)
T ss_dssp HHHHHT-TS-STTCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HH-hCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444644 34 6999999888888888888898888886
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=22.50 E-value=1.9e+02 Score=23.63 Aligned_cols=37 Identities=16% Similarity=-0.005 Sum_probs=27.9
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~~ 91 (349)
.|..+.+..+.+.++.........+...+++++.+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhh
Confidence 4667777789999888777777777777777777753
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=18.32 E-value=63 Score=26.20 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=34.1
Q ss_pred hHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCcceeec
Q 018861 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (349)
Q Consensus 55 ~p~il~~a~gl~~~~~~~li~at~~~~Gi~tllq~~----~G~rlPi~~g 100 (349)
.|..+.+..|+++.|...+.+...+...++..+.+. +|.|..++.+
T Consensus 30 l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~ 79 (417)
T d1pv7a_ 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI 79 (417)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 355566668999999888888888888888888876 5766655443
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.03 E-value=1.7e+02 Score=15.27 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHH
Q 018861 222 FAVIFSVVIVWIYAH 236 (349)
Q Consensus 222 ~aiLigi~vg~i~a~ 236 (349)
.++..|+.+|.+++.
T Consensus 12 ialffgiavgiifai 26 (32)
T d2e74e1 12 IALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeE
Confidence 467778888877653
No 5
>d2qlva1 d.129.6.2 (A:460-630) Carbon catabolite-derepressing protein kinase SNF1 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=3.70 E-value=2.2e+02 Score=21.65 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCCCCcccccCCCC-C--hHHHHHHHHHHH
Q 018861 9 ADEPLPHPAKDQLPSISYCITSPP-P--WPEAILLGFQHY 45 (349)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-p--~~~~~~~glQ~~ 45 (349)
.+...|++++.++..=.|++..|. | ...++.-+||..
T Consensus 31 ~~~~~p~~~k~~~~kWhfGIRSrs~P~eiM~evykALk~L 70 (171)
T d2qlva1 31 ASKISPLVTKKSKTRWHFGIRSRSYPLDVMGEIYIALKNL 70 (171)
T ss_dssp GGTCCCCCC----CCCEESEEECSCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCcccceeeeecccCCCHHHHHHHHHHHHHHc
Confidence 344455566666677889998776 4 556677777654
No 6
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.37 E-value=4.3e+02 Score=15.72 Aligned_cols=18 Identities=6% Similarity=-0.021 Sum_probs=13.3
Q ss_pred hhhcCCCChHHHHHHHHH
Q 018861 59 LVPQMGGGNEEKAKVIQT 76 (349)
Q Consensus 59 l~~a~gl~~~~~~~li~a 76 (349)
++...|+++.+...|++.
T Consensus 34 LA~~l~l~~~qV~vWFqN 51 (58)
T d2craa1 34 ISAATSLSERQITIWFQN 51 (58)
T ss_dssp HHHHTCCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHeeecccc
Confidence 455579999888887653
No 7
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=2.31 E-value=2.2e+02 Score=18.56 Aligned_cols=15 Identities=13% Similarity=0.574 Sum_probs=11.0
Q ss_pred ccccchhhhHHHHHH
Q 018861 215 GKNIFDRFAVIFSVV 229 (349)
Q Consensus 215 ~~~~~~~~aiLigi~ 229 (349)
+..++.+.+++++++
T Consensus 41 K~~f~~q~smlLAvL 55 (78)
T d1zs4a1 41 KRDWIPKFSMLLAVL 55 (78)
T ss_dssp HHHTHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 356788888888763
No 8
>d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]}
Probab=2.27 E-value=3.3e+02 Score=18.96 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=17.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHH
Q 018861 27 CITSPPPWPEAILLGFQHYIVM 48 (349)
Q Consensus 27 ~~~~~~p~~~~~~~glQ~~l~~ 48 (349)
..++.|.|.++-.++.|.+.+.
T Consensus 47 ~ME~~P~WL~Es~~~~Q~~iV~ 68 (132)
T d2au5a1 47 EMEKDPNWLEEAAGGMQGVIVQ 68 (132)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHhhCchHHHHHHHHhHHHHHH
Confidence 3567788999999999966543
No 9
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.13 E-value=4.8e+02 Score=15.03 Aligned_cols=17 Identities=6% Similarity=-0.126 Sum_probs=12.1
Q ss_pred hhhcCCCChHHHHHHHH
Q 018861 59 LVPQMGGGNEEKAKVIQ 75 (349)
Q Consensus 59 l~~a~gl~~~~~~~li~ 75 (349)
++...|+++.+...|++
T Consensus 30 LA~~lgl~~~qV~~WFq 46 (53)
T d1le8a_ 30 VAKKCGITPLQVRVWFI 46 (53)
T ss_dssp HHHHTTSCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 44556888888877765
No 10
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=2.06 E-value=4.2e+02 Score=15.32 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=11.9
Q ss_pred hhhcCCCChHHHHHHHH
Q 018861 59 LVPQMGGGNEEKAKVIQ 75 (349)
Q Consensus 59 l~~a~gl~~~~~~~li~ 75 (349)
++...|+++.+...|++
T Consensus 32 LA~~lgL~~~qV~vWFq 48 (53)
T d1p7ia_ 32 LSSELGLNEAQIKIWFQ 48 (53)
T ss_dssp HHHHHTCCHHHHHHHHH
T ss_pred HHHHhCCChHHhhhccc
Confidence 44556888888777765
Done!