BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018864
         (349 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255554747|ref|XP_002518411.1| Alternative oxidase 4, chloroplast precursor, putative [Ricinus
           communis]
 gi|223542256|gb|EEF43798.1| Alternative oxidase 4, chloroplast precursor, putative [Ricinus
           communis]
          Length = 356

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/346 (70%), Positives = 287/346 (82%), Gaps = 16/346 (4%)

Query: 4   TLSQTVSVFSNKAINLKSVASFNTIKTLRFNPPSSPR-SLSRNFCRVQATILQDEEEKVV 62
           ++S T +       N K+++SF++   L F   SSPR   +   CRVQAT+L++ EEKVV
Sbjct: 5   SISPTTTAAVYAISNSKALSSFSSRNGLSFISLSSPRFKATGKLCRVQATVLRENEEKVV 64

Query: 63  VEESSPLKNFPNDDE---------PPETGSASALEKWVIKFEQSVNILLTESVIMVLDAL 113
           ++E+   K+F +DD+         PP+T    +LE+WVIK EQSVN+ LT+SVI +LDA 
Sbjct: 65  IDETFQPKSFTDDDDGKGGRTGGDPPDT----SLERWVIKLEQSVNVFLTDSVIKILDAF 120

Query: 114 YRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME 173
           Y DRDYARFFVLETIARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME
Sbjct: 121 YHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME 180

Query: 174 ELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE 233
           ELGGN+WWFDRFLAQHIA+ YY +TVFMY +SPRMAYHFSECVESHA+ TYDKFIKAQGE
Sbjct: 181 ELGGNSWWFDRFLAQHIAIIYYIMTVFMYALSPRMAYHFSECVESHAYATYDKFIKAQGE 240

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
           +LKK+PAP VA+KYYT GDLYLFDEFQT+R P+SRRPKI+NLYDVFLNIRDDEAEHCKTM
Sbjct: 241 ELKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIDNLYDVFLNIRDDEAEHCKTM 300

Query: 294 KACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAV 339
           +ACQTHGNLRSPHS+ E+D   ED SGCI+ +ADCEGIVDC+KK++
Sbjct: 301 RACQTHGNLRSPHSHVENDI--EDVSGCILPEADCEGIVDCMKKSL 344


>gi|449455371|ref|XP_004145426.1| PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like
           [Cucumis sativus]
 gi|449525172|ref|XP_004169592.1| PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like
           [Cucumis sativus]
          Length = 355

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/343 (72%), Positives = 283/343 (82%), Gaps = 17/343 (4%)

Query: 15  KAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPN 74
           K IN K++ASF    +    P      +SR  CRV AT+L+++EEKVV+EES P K  P 
Sbjct: 21  KPINTKNLASFRIPTSFSARP-----LISRKSCRVMATVLKEDEEKVVLEESFPPKASPI 75

Query: 75  DD------EPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETI 128
            D      + PE+ S++  +KW++K EQSVN+LLT+SVI +LDA Y DR YARFFVLETI
Sbjct: 76  QDGEGGSGQGPESSSSNGFDKWIVKLEQSVNVLLTDSVIKILDAFYHDRHYARFFVLETI 135

Query: 129 ARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQ 188
           ARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGN WWFDRFLAQ
Sbjct: 136 ARVPYFAFVSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNDWWFDRFLAQ 195

Query: 189 HIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYY 248
           HIAVAYYF+TVFMY+ISPRMAYHFSECVESHAF TYDKF+KA+GE+LKK PAP VA+KYY
Sbjct: 196 HIAVAYYFMTVFMYMISPRMAYHFSECVESHAFSTYDKFLKAEGEELKKQPAPEVAVKYY 255

Query: 249 TGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSY 308
           T GDLYLFDEFQT+R P SRRPKIE+LYDVF+NIRDDEAEHCKTM+ACQ+HGNLRSPHSY
Sbjct: 256 TEGDLYLFDEFQTSRAPKSRRPKIESLYDVFMNIRDDEAEHCKTMRACQSHGNLRSPHSY 315

Query: 309 SEDDFGC--EDESGCIVAQADCEGIVDCIKKAVAVSTPRVKQN 349
           SE    C  EDE  C +A+ADCEGIVDCIKK++  S+P VKQ 
Sbjct: 316 SE---SCPEEDEPLCNLAEADCEGIVDCIKKSI-TSSPPVKQK 354


>gi|224116034|ref|XP_002317190.1| predicted protein [Populus trichocarpa]
 gi|222860255|gb|EEE97802.1| predicted protein [Populus trichocarpa]
          Length = 358

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/321 (76%), Positives = 270/321 (84%), Gaps = 11/321 (3%)

Query: 34  NPPSSPRSLSRNFCRVQATIL-QDEEEKVVVEESSPLKNFPNDDEP----PETGSASALE 88
           N  S P   SR  CRVQATIL +DEE+KVVVEES   K F +  EP    P++ S   LE
Sbjct: 43  NRTSHPFLPSRKLCRVQATILREDEEKKVVVEESFQPKTFTH--EPVRGSPQSSSPGGLE 100

Query: 89  KWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGW 148
            W IK EQSVN+ LT+SVI +LD LY DRDYARFFVLETIARVPYFAFISVLHMYESFGW
Sbjct: 101 TWAIKLEQSVNVFLTDSVIKILDTLYHDRDYARFFVLETIARVPYFAFISVLHMYESFGW 160

Query: 149 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
           WRRADYLKVHFAESWNEMHHLLIMEELGGN+WWFDR LAQ IA +YYF+TV MY +SPRM
Sbjct: 161 WRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRLLAQVIATSYYFMTVLMYALSPRM 220

Query: 209 AYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSR 268
           AYHFSECVESHAF TYDKFIKAQG+ LKK+PAP VA+KYYT GDLYLFDEFQT+R P+SR
Sbjct: 221 AYHFSECVESHAFATYDKFIKAQGDDLKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSR 280

Query: 269 RPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADC 328
           RPKIENLYDVFLN+RDDEAEHCKTMKACQTHGNLRSPHSY ED F  ED++GC + QADC
Sbjct: 281 RPKIENLYDVFLNVRDDEAEHCKTMKACQTHGNLRSPHSYPEDAF--EDDTGCDLPQADC 338

Query: 329 EGIVDCIKKAVAVSTPRVKQN 349
           EGIVDCIKK  +V++P  KQN
Sbjct: 339 EGIVDCIKK--SVTSPPSKQN 357


>gi|428161219|gb|ACA53387.2| plastid terminal oxidase [Daucus carota]
          Length = 365

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/343 (70%), Positives = 275/343 (80%), Gaps = 16/343 (4%)

Query: 18  NLKSVASFNTIKTLRFNP--------PSSPRSLSRNFCRVQATILQDEEEKVVVEESSPL 69
           N+ +  S  +  +LRFNP         SS  S SR   +VQA ILQ+ EEKVVVE+S   
Sbjct: 24  NISNNFSSFSCNSLRFNPLVLPQSCSASSHPSFSRKLFKVQARILQENEEKVVVEDSFQP 83

Query: 70  KNFP------NDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFF 123
           K+ P      +D EPP+  S+S +E+WVIK EQS+NILLT+SVI +LD LY DRDYARFF
Sbjct: 84  KSSPEVDGSGSDREPPDGSSSSGIERWVIKLEQSINILLTDSVIKILDTLYHDRDYARFF 143

Query: 124 VLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 183
           VLETIARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD
Sbjct: 144 VLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 203

Query: 184 RFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAV 243
           RFL+QHIAV YYF+  FMY++SPRMAYHFSECVE HAFETYDKFI A+GE LKK+PA  V
Sbjct: 204 RFLSQHIAVFYYFMAAFMYLLSPRMAYHFSECVEHHAFETYDKFINAKGEDLKKLPASKV 263

Query: 244 AIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLR 303
           AIKYYT GD+YLFDEFQT+R PN+RRP I+NLYDVF+NIRDDEAEHCKTMKACQT GNLR
Sbjct: 264 AIKYYTEGDMYLFDEFQTSRAPNTRRPVIDNLYDVFVNIRDDEAEHCKTMKACQTPGNLR 323

Query: 304 SPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAVAVSTPRV 346
           SPHS  ++ F  ED++GCI+    CEGIVDCIKK+V   T  V
Sbjct: 324 SPHSGFDNAF--EDDAGCILPDTSCEGIVDCIKKSVTRDTSSV 364


>gi|350536613|ref|NP_001234511.1| plastid quinol oxidase [Solanum lycopersicum]
 gi|9937099|gb|AAG02286.1|AF177979_1 plastid terminal oxidase [Solanum lycopersicum]
 gi|9937101|gb|AAG02287.1|AF177980_1 plastid terminal oxidase [Solanum lycopersicum]
 gi|10505366|gb|AAG18449.1|AF302931_1 plastid quinol oxidase [Solanum lycopersicum]
 gi|10505368|gb|AAG18450.1|AF302932_1 plastid quinol oxidase [Solanum lycopersicum]
          Length = 366

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/329 (72%), Positives = 280/329 (85%), Gaps = 8/329 (2%)

Query: 18  NLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPND-- 75
           N ++   FN++  +R +  +S  S+SR  CRV+AT+LQ+ EE+VVVE+S   K+FP++  
Sbjct: 33  NSQNPCRFNSVFPIRKSDGASRCSVSRKSCRVRATLLQENEEEVVVEKSFAPKSFPDNVG 92

Query: 76  ----DEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARV 131
                +PP+  S++ LEKWVIK EQSVNILLT+SVI +LD LY +R+YARFFVLETIARV
Sbjct: 93  GGSNGKPPDDSSSNGLEKWVIKLEQSVNILLTDSVIKILDTLYHNRNYARFFVLETIARV 152

Query: 132 PYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIA 191
           PYFAFISVLHMYESFGWWRRADY+KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIA
Sbjct: 153 PYFAFISVLHMYESFGWWRRADYMKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIA 212

Query: 192 VAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGG 251
           + YYF+TV MY +SPRMAYHFSECVESHA+ETYDKFIK QGE+LK +PAP +A+ YYTGG
Sbjct: 213 IFYYFMTVLMYALSPRMAYHFSECVESHAYETYDKFIKDQGEELKNLPAPKIAVDYYTGG 272

Query: 252 DLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSED 311
           DLYLFDEFQT+R PN+RRPKI+NLYDVF+NIRDDEAEHCKTMKACQTHG+LRSPH+   D
Sbjct: 273 DLYLFDEFQTSREPNTRRPKIDNLYDVFMNIRDDEAEHCKTMKACQTHGSLRSPHTDPCD 332

Query: 312 DFGCEDESGCIVAQADCEGIVDCIKKAVA 340
           D   ED++GC V QADC GIVDCIKK+V 
Sbjct: 333 D--SEDDTGCSVPQADCIGIVDCIKKSVT 359


>gi|357447777|ref|XP_003594164.1| Alternative oxidase [Medicago truncatula]
 gi|87240787|gb|ABD32645.1| Alternative oxidase [Medicago truncatula]
 gi|355483212|gb|AES64415.1| Alternative oxidase [Medicago truncatula]
          Length = 342

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/360 (67%), Positives = 285/360 (79%), Gaps = 31/360 (8%)

Query: 1   MMTTLSQTVSVFSNKAINLKSVASFNTI--KTLRFNPPSSPRSLSRNFCRVQATILQDEE 58
           M +T   + S+F    +N K  +S N++  + L F PP           R+++++LQD+E
Sbjct: 1   MASTAMFSSSLFPITPLN-KLSSSRNSLIFRPLSFRPP---------LFRIRSSLLQDKE 50

Query: 59  EKVVVEESSPLKNFP---------NDDEPPETGSASALEKWVIKFEQSVNILLTESVIMV 109
           +KV+ + + P K  P         NDD+   T S SA EK VIK EQSVNI LT+SVI +
Sbjct: 51  DKVITQNTFPSKTSPLDSVTENSTNDDD---TSSTSAWEKGVIKVEQSVNIFLTDSVIKI 107

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHL 169
           LDALYRDR+YARFFVLETIARVPYFAF+S+LHMYESFGWWRRADYLKVHFAESWNEMHHL
Sbjct: 108 LDALYRDRNYARFFVLETIARVPYFAFMSILHMYESFGWWRRADYLKVHFAESWNEMHHL 167

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
           LIMEELGGNAWWFDRFLAQHIA+ YYF+T  MY+ISPRMAYHFSECVESHAFETYDKFIK
Sbjct: 168 LIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESHAFETYDKFIK 227

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            QGE+LKKMPAP VA+ YYTGGDLYLFDEFQT+R+PN+RRP I+NLYDVFLNIRDDEAEH
Sbjct: 228 EQGEELKKMPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPTIDNLYDVFLNIRDDEAEH 287

Query: 290 CKTMKACQTHGNLRSPHSY--SEDDFGCEDESGCIVAQADCEGIVDCIKKAVAVSTPRVK 347
           CKTM+ACQT+GNLRSPHSY  +EDD    DES C + +A CEGIVDCIKK+V  +  +VK
Sbjct: 288 CKTMRACQTYGNLRSPHSYADAEDD----DESVCTI-EAGCEGIVDCIKKSVTSNPAKVK 342


>gi|356555706|ref|XP_003546171.1| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like
           [Glycine max]
          Length = 332

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/322 (72%), Positives = 265/322 (82%), Gaps = 18/322 (5%)

Query: 39  PRSLSRNFCRV---------QATILQDEEEKVVVEESSPLKNFPNDDEPPETG----SAS 85
           P+ LS ++ R+         ++++LQD E+KV+V +S P K  P       TG    + S
Sbjct: 16  PKPLSSSYSRIHTAPQLFRARSSLLQDNEKKVIVHDSFPSKTSPLHTADKSTGGNSINTS 75

Query: 86  ALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYES 145
           A EK +IK EQSVNI LT+SVI +LD LY DR YARFFVLETIARVPYFAF+SVLHMYES
Sbjct: 76  AFEKRIIKVEQSVNIFLTDSVIKILDTLYHDRHYARFFVLETIARVPYFAFMSVLHMYES 135

Query: 146 FGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVIS 205
           FGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIA+ YY +TV MY +S
Sbjct: 136 FGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYIMTVLMYAVS 195

Query: 206 PRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLP 265
           PRMAYHFSECVESHAFETYDKFIK QG++LKKMPAP VA+ YYTG DLYLFDEFQT+R+P
Sbjct: 196 PRMAYHFSECVESHAFETYDKFIKVQGDELKKMPAPEVAVNYYTGDDLYLFDEFQTSRVP 255

Query: 266 NSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQ 325
           NSRRPKIENLYDVF+NIRDDEAEHCKTMKACQTHGNLRSPHSY+EDD    D S C + +
Sbjct: 256 NSRRPKIENLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSYAEDD----DSSVCAL-E 310

Query: 326 ADCEGIVDCIKKAVAVSTPRVK 347
           ADCEGIVDCIKK+VA +  +VK
Sbjct: 311 ADCEGIVDCIKKSVASNPAKVK 332


>gi|297799790|ref|XP_002867779.1| hypothetical protein ARALYDRAFT_492640 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313615|gb|EFH44038.1| hypothetical protein ARALYDRAFT_492640 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 351

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/317 (73%), Positives = 264/317 (83%), Gaps = 6/317 (1%)

Query: 29  KTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDD--EPPETGSAS- 85
           + L   P SS R L RN  RVQATILQD+EEKVVVEES   + F   +  E P   S+S 
Sbjct: 35  RLLHHRPLSSRRLLFRNIDRVQATILQDDEEKVVVEESFKAETFTGKEPLEEPNMNSSSS 94

Query: 86  -ALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYE 144
            A E W+IK EQ VN+ LT+SVI +LD LYRDR YARFFVLETIARVPYFAF+SVLHMYE
Sbjct: 95  SAFESWIIKLEQGVNVFLTDSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYE 154

Query: 145 SFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVI 204
           +FGWWRRADYLKVHFAESWNEMHHLLIMEELGGN+WWFDRFLAQHIA  YYF+TVF+Y++
Sbjct: 155 TFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYIL 214

Query: 205 SPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARL 264
           SPRMAYHFSECVESHA+ETYDKF+K  GE+LK MPAP +A+KYYTG DLYLFDEFQT+R 
Sbjct: 215 SPRMAYHFSECVESHAYETYDKFLKTSGEELKNMPAPDIAVKYYTGSDLYLFDEFQTSRA 274

Query: 265 PNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVA 324
           PN+RRP IENLYDVF+NIRDDEAEHCKTM+ACQT G+LRSPHS  ED  G E ESGC+V 
Sbjct: 275 PNTRRPVIENLYDVFVNIRDDEAEHCKTMRACQTLGSLRSPHSILEDGDG-EGESGCVVP 333

Query: 325 Q-ADCEGIVDCIKKAVA 340
           + A CEGIVDCIKK++ 
Sbjct: 334 EAAHCEGIVDCIKKSIT 350


>gi|388507484|gb|AFK41808.1| unknown [Medicago truncatula]
          Length = 342

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/360 (67%), Positives = 285/360 (79%), Gaps = 31/360 (8%)

Query: 1   MMTTLSQTVSVFSNKAINLKSVASFNTI--KTLRFNPPSSPRSLSRNFCRVQATILQDEE 58
           M +T   + S+F    +N K  +S N++  + L F PP           R+++++LQD+E
Sbjct: 1   MASTAMFSSSLFPITPLN-KLSSSRNSLIFRPLSFRPP---------LFRIRSSLLQDKE 50

Query: 59  EKVVVEESSPLKNFP---------NDDEPPETGSASALEKWVIKFEQSVNILLTESVIMV 109
           +KV+ + + P K  P         NDD+   T S SA EK VIK EQSVNI LT+SVI +
Sbjct: 51  DKVITQNTFPSKTSPLDSVTENSTNDDD---TSSTSAWEKGVIKVEQSVNIFLTDSVIKI 107

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHL 169
           LDALYRDR+YARFFVLETIARVPYFAF+S+LHMYESFGWWRRADYLKVHFAESWNEMHHL
Sbjct: 108 LDALYRDRNYARFFVLETIARVPYFAFMSILHMYESFGWWRRADYLKVHFAESWNEMHHL 167

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
           LIMEELGGNAWWFDRFLAQHIA+ YYF+T  MY+ISPRMAYHFSECVESHAFETYDKFIK
Sbjct: 168 LIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESHAFETYDKFIK 227

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            QGE+LKKMPAP VA+ YYTGGDLYLFDEF+T+R+PN+RRP I+NLYDVFLNIRDDEAEH
Sbjct: 228 EQGEELKKMPAPEVAVNYYTGGDLYLFDEFRTSRVPNTRRPTIDNLYDVFLNIRDDEAEH 287

Query: 290 CKTMKACQTHGNLRSPHSY--SEDDFGCEDESGCIVAQADCEGIVDCIKKAVAVSTPRVK 347
           CKTM+ACQT+GNLRSPHSY  +EDD    DES C + +A CEGIVDCIKK+V  +  +VK
Sbjct: 288 CKTMRACQTYGNLRSPHSYADAEDD----DESVCTI-EAGCEGIVDCIKKSVTSNPAKVK 342


>gi|224118168|ref|XP_002331574.1| predicted protein [Populus trichocarpa]
 gi|222873798|gb|EEF10929.1| predicted protein [Populus trichocarpa]
          Length = 362

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/322 (71%), Positives = 266/322 (82%), Gaps = 7/322 (2%)

Query: 33  FNP---PSSPRSLSRNFCRVQATIL-QDEEEKVVVEESSPLKNFPNDDE-PPETGSASAL 87
           FNP   P  P + S  FCRVQAT+  ++E+EKVVVEES     F +  E  P+  S + L
Sbjct: 42  FNPTSLPFPPSTRSAKFCRVQATVFKENEDEKVVVEESFRPSTFTHGPENSPQPSSPTEL 101

Query: 88  EKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFG 147
           +KWV+K EQSVN+ LT+SV+ +LDALY  RDYARF+VLETIARVPYFAFISVLH+YESFG
Sbjct: 102 DKWVVKLEQSVNVFLTDSVVTILDALYHGRDYARFYVLETIARVPYFAFISVLHLYESFG 161

Query: 148 WWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPR 207
           WWRR+DY+KVHFAESWNEMHHLLIMEELGGN+ WFDRFLAQH+A  YY +TV MY +SPR
Sbjct: 162 WWRRSDYIKVHFAESWNEMHHLLIMEELGGNSLWFDRFLAQHMAFFYYIMTVLMYALSPR 221

Query: 208 MAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           MAYHFSECVE+HAFETYDKFIKAQGE L+KMPAP VA+KYYT GDLYLFDEFQT+R P+S
Sbjct: 222 MAYHFSECVENHAFETYDKFIKAQGEDLRKMPAPEVAVKYYTEGDLYLFDEFQTSRAPHS 281

Query: 268 RRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQAD 327
           RRPKIENLYDVFLNIRDDEAEHCKTM ACQTHGNLRSPHSY ED F  ED++G  + QAD
Sbjct: 282 RRPKIENLYDVFLNIRDDEAEHCKTMGACQTHGNLRSPHSYPEDAF--EDDTGSELRQAD 339

Query: 328 CEGIVDCIKKAVAVSTPRVKQN 349
           C G+ DC++K+V     + KQN
Sbjct: 340 CGGVADCLEKSVTSPPSKQKQN 361


>gi|363807489|ref|NP_001242139.1| uncharacterized protein LOC100813378 [Glycine max]
 gi|255635539|gb|ACU18120.1| unknown [Glycine max]
          Length = 332

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/304 (75%), Positives = 257/304 (84%), Gaps = 9/304 (2%)

Query: 48  RVQATILQDEEEKVVVEESSPLKNFPNDDEPPETG----SASALEKWVIKFEQSVNILLT 103
           R ++ +LQD+EEKV+V++S P K  P       T     + SA EK +IK EQSVNI LT
Sbjct: 34  RARSLLLQDKEEKVIVQDSFPSKTSPLHSADKSTSGNSINTSAFEKRIIKVEQSVNIFLT 93

Query: 104 ESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESW 163
           +SVI +LD LY DR YARFFVLETIARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESW
Sbjct: 94  DSVIKILDTLYHDRHYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESW 153

Query: 164 NEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFET 223
           NEMHHLLIMEELGGNAWWFDRFLAQHIA+ YY +TV MY +SPRMAYHFSECVESHAFET
Sbjct: 154 NEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYIMTVLMYAVSPRMAYHFSECVESHAFET 213

Query: 224 YDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
           YDKFIK QG++LKKMPAP VA+ YYTG DLYLFDEFQT+R+PNSRRPKIENLYDVF+NIR
Sbjct: 214 YDKFIKVQGDELKKMPAPEVAVNYYTGDDLYLFDEFQTSRVPNSRRPKIENLYDVFVNIR 273

Query: 284 DDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAVAVST 343
           DDEAEHCKTMKACQTHGNLRSPHSY+EDD    D S C + +ADCEGIVDCIKK+V  + 
Sbjct: 274 DDEAEHCKTMKACQTHGNLRSPHSYAEDD----DSSVCAL-EADCEGIVDCIKKSVTSNA 328

Query: 344 PRVK 347
            +VK
Sbjct: 329 AKVK 332


>gi|18415888|ref|NP_567658.1| alternative oxidase 4 [Arabidopsis thaliana]
 gi|85681033|sp|Q56X52.2|AOX4_ARATH RecName: Full=Ubiquinol oxidase 4, chloroplastic/chromoplastic;
           AltName: Full=Alternative oxidase 4; AltName:
           Full=Plastid terminal oxidase; AltName: Full=Protein
           IMMUTANS; Flags: Precursor
 gi|11692822|gb|AAG40014.1|AF324663_1 AT4g22260 [Arabidopsis thaliana]
 gi|11908102|gb|AAG41480.1|AF326898_1 unknown protein [Arabidopsis thaliana]
 gi|12642914|gb|AAK00399.1|AF339717_1 unknown protein [Arabidopsis thaliana]
 gi|4138855|gb|AAD03599.1| IMMUTANS [Arabidopsis thaliana]
 gi|15010796|gb|AAK74057.1| AT4g22260/T10I14_90 [Arabidopsis thaliana]
 gi|23308315|gb|AAN18127.1| At4g22260/T10I14_90 [Arabidopsis thaliana]
 gi|332659183|gb|AEE84583.1| alternative oxidase 4 [Arabidopsis thaliana]
          Length = 351

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/301 (75%), Positives = 258/301 (85%), Gaps = 6/301 (1%)

Query: 45  NFCRVQATILQDEEEKVVVEES----SPLKNFPNDDEPPETGSASALEKWVIKFEQSVNI 100
           N  RVQATILQD+EEKVVVEES    +     P ++    + S SA E W+IK EQ VN+
Sbjct: 51  NNHRVQATILQDDEEKVVVEESFKAETSTGTEPLEEPNMSSSSTSAFETWIIKLEQGVNV 110

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
            LT+SVI +LD LYRDR YARFFVLETIARVPYFAF+SVLHMYE+FGWWRRADYLKVHFA
Sbjct: 111 FLTDSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFA 170

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNEMHHLLIMEELGGN+WWFDRFLAQHIA  YYF+TVF+Y++SPRMAYHFSECVESHA
Sbjct: 171 ESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHA 230

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           +ETYDKF+KA GE+LK MPAP +A+KYYTGGDLYLFDEFQT+R PN+RRP IENLYDVF+
Sbjct: 231 YETYDKFLKASGEELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFV 290

Query: 281 NIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIV-AQADCEGIVDCIKKAV 339
           NIRDDEAEHCKTM+ACQT G+LRSPHS  EDD   E+ESGC+V  +A CEGIVDC+KK++
Sbjct: 291 NIRDDEAEHCKTMRACQTLGSLRSPHSILEDD-DTEEESGCVVPEEAHCEGIVDCLKKSI 349

Query: 340 A 340
            
Sbjct: 350 T 350


>gi|3929647|emb|CAA06190.1| Immutans protein [Arabidopsis thaliana]
          Length = 351

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/301 (74%), Positives = 258/301 (85%), Gaps = 6/301 (1%)

Query: 45  NFCRVQATILQDEEEKVVVEES----SPLKNFPNDDEPPETGSASALEKWVIKFEQSVNI 100
           N  RVQATILQD+EEKVVVEES    +     P ++    + S SA E W+IK EQ VN+
Sbjct: 51  NNHRVQATILQDDEEKVVVEESFKAETSTGTEPLEEPNMSSSSTSAFETWIIKLEQGVNV 110

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
            LT+SVI +LD LYRDR YARFFVLETIARVPYFAF+SVLHMYE+FGWWRRADYLKVHFA
Sbjct: 111 FLTDSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFA 170

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNEMHHLLIMEELGGN+WWFDRFLAQHIA  YYF+TVF+Y++SPRMAYHFSECVESHA
Sbjct: 171 ESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHA 230

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           +ETYDKF+KA GE+LK MPAP +A+KYYTGGDLYLFDEFQT+R PN+RRP IENLYDVF+
Sbjct: 231 YETYDKFLKASGEELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFV 290

Query: 281 NIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIV-AQADCEGIVDCIKKAV 339
           NIRDDEAEHCKTM+ACQT G+LRSPHS  +DD   E+ESGC+V  +A CEGIVDC+KK++
Sbjct: 291 NIRDDEAEHCKTMRACQTLGSLRSPHSILDDD-DTEEESGCVVPEEAHCEGIVDCLKKSI 349

Query: 340 A 340
            
Sbjct: 350 T 350


>gi|9937103|gb|AAG02288.1|AF177981_1 plastid terminal oxidase [Capsicum annuum]
          Length = 357

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 241/344 (70%), Positives = 280/344 (81%), Gaps = 11/344 (3%)

Query: 3   TTLSQTVSVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVV 62
           T++S + S F     N K+    N++ +LR +  +   SLSR   RV+AT+L++ EE+VV
Sbjct: 12  TSVSSSYSAF---LCNSKNPFCLNSLFSLRNSHRTFQPSLSRKSSRVRATLLKENEEEVV 68

Query: 63  VEESSPLKNFP------NDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRD 116
           VE+S   K+FP      N+ EPP+  S++ LEKWVIK EQSVNI LT+SVI +LD LY D
Sbjct: 69  VEKSFAPKSFPGNVGGGNNGEPPDNSSSNGLEKWVIKIEQSVNIFLTDSVIKILDTLYHD 128

Query: 117 RDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG 176
           R YARFFVLETIARVPYFAFISVLH+YESFGWWRRADYLKVHFAESWNEMHHLLIMEELG
Sbjct: 129 RHYARFFVLETIARVPYFAFISVLHLYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG 188

Query: 177 GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLK 236
           GNAWWFDRFLAQHIAV YYF+TV MY +SPRMAYHFSECVE HA+ETYDKFIK Q  +LK
Sbjct: 189 GNAWWFDRFLAQHIAVFYYFMTVSMYALSPRMAYHFSECVEHHAYETYDKFIKDQEAELK 248

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
           K+PAP +A+ YYTGGDLYLFDEFQT+R PN+RRPKI+NLYDVF+NIRDDEAEHCKTMKAC
Sbjct: 249 KLPAPKIAVSYYTGGDLYLFDEFQTSREPNTRRPKIDNLYDVFMNIRDDEAEHCKTMKAC 308

Query: 297 QTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAVA 340
           QTHG+LRSPH+   D+   ED+ GC V QADC GIVDCI K+VA
Sbjct: 309 QTHGSLRSPHTNPCDE--SEDDPGCSVPQADCVGIVDCITKSVA 350


>gi|81296552|gb|ABB70513.1| plastid terminal oxidase [Coffea canephora]
          Length = 351

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/321 (70%), Positives = 264/321 (82%), Gaps = 7/321 (2%)

Query: 17  INLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDD 76
           +N  + +  N + +      ++ R LSRN  RVQAT+LQ++E+KVVVEES   K++P + 
Sbjct: 32  LNSHTPSGLNVVTSPHHRHTATQRPLSRNSFRVQATVLQEDEQKVVVEESFQSKSYPENG 91

Query: 77  EPP-----ETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARV 131
                   +  S+S LEKWV+K EQS+NI LT+SVI +LD LY DR YARFFVLETIARV
Sbjct: 92  GGGNGEPPDASSSSGLEKWVVKIEQSINIFLTDSVIKILDTLYHDRHYARFFVLETIARV 151

Query: 132 PYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIA 191
           PYFAF+SVLH+YESFGWWRRAD  +VHFAESWNEMHHLLIMEELGGN+WWFDRFLAQHIA
Sbjct: 152 PYFAFMSVLHLYESFGWWRRADLSEVHFAESWNEMHHLLIMEELGGNSWWFDRFLAQHIA 211

Query: 192 VAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGG 251
           V YYF+TVFMY++SPRMAYHFSECVESHAFETYDKFIK QGE+LKK+PA  VA+KYYT G
Sbjct: 212 VFYYFMTVFMYMLSPRMAYHFSECVESHAFETYDKFIKDQGEQLKKLPASNVAVKYYTEG 271

Query: 252 DLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSED 311
           +LYLFDEFQTAR P SRRPKIEN+YDVFLNIRDDEAEHCKTMKACQTHG LRSPHSY++D
Sbjct: 272 NLYLFDEFQTARPPTSRRPKIENMYDVFLNIRDDEAEHCKTMKACQTHGGLRSPHSYTDD 331

Query: 312 DFGCEDESGCIVAQADCEGIV 332
              CE+++G  + QADCE + 
Sbjct: 332 --ACEEDAGYGLPQADCEELT 350


>gi|2832676|emb|CAA16776.1| putative protein [Arabidopsis thaliana]
 gi|7269072|emb|CAB79181.1| putative protein [Arabidopsis thaliana]
          Length = 335

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/301 (71%), Positives = 244/301 (81%), Gaps = 22/301 (7%)

Query: 45  NFCRVQATILQDEEEKVVVEES----SPLKNFPNDDEPPETGSASALEKWVIKFEQSVNI 100
           N  RVQATILQD+EEKVVVEES    +     P ++    + S SA E W+IK EQ VN+
Sbjct: 51  NNHRVQATILQDDEEKVVVEESFKAETSTGTEPLEEPNMSSSSTSAFETWIIKLEQGVNV 110

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
            LT+SVI +LD LYRDR YARFFVLETIARVPYFAF+SVLHMYE+FGWWRRADYLKVHFA
Sbjct: 111 FLTDSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFA 170

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNEMHHLLIMEELGGN+WWFDRFLAQHIA  YYF+TVF+Y++SPRMAYHFSECVESHA
Sbjct: 171 ESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHA 230

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           +ETYDKF+KA GE+LK MPAP +A+KYYTGGDLYLF                ENLYDVF+
Sbjct: 231 YETYDKFLKASGEELKNMPAPDIAVKYYTGGDLYLF----------------ENLYDVFV 274

Query: 281 NIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIV-AQADCEGIVDCIKKAV 339
           NIRDDEAEHCKTM+ACQT G+LRSPHS  EDD   E+ESGC+V  +A CEGIVDC+KK++
Sbjct: 275 NIRDDEAEHCKTMRACQTLGSLRSPHSILEDD-DTEEESGCVVPEEAHCEGIVDCLKKSI 333

Query: 340 A 340
            
Sbjct: 334 T 334


>gi|116783028|gb|ABK22767.1| unknown [Picea sitchensis]
          Length = 347

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/305 (68%), Positives = 241/305 (79%), Gaps = 16/305 (5%)

Query: 36  PSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFE 95
           P+  R +SR    +QA ++Q  +E  +  ES+ + N      PP       LE+W IKFE
Sbjct: 47  PAKQRPVSRKLISIQAVLIQKGDENDL--ESNIVGN------PP-----GMLERWTIKFE 93

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL 155
           QS NI+L E+VI +LDALY +R YARF+VLETIARVPYFAF+SVLHMYESFGWWRR DYL
Sbjct: 94  QSFNIVLIETVIKILDALYSERHYARFYVLETIARVPYFAFVSVLHMYESFGWWRRTDYL 153

Query: 156 KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSEC 215
           KVHFAESWNE+HHLLIME LGGN  WFDRFLAQHIAV YYF+T  MY++SPRMAYHFSEC
Sbjct: 154 KVHFAESWNELHHLLIMEALGGNERWFDRFLAQHIAVFYYFMTASMYILSPRMAYHFSEC 213

Query: 216 VESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENL 275
           VE HA+ TYD+FIK QGE+LKK+PAP VA+KYYT GDLYLFDEFQT R P SRRPK+ENL
Sbjct: 214 VEKHAYSTYDEFIKLQGEELKKLPAPDVAVKYYTQGDLYLFDEFQTDRTPCSRRPKVENL 273

Query: 276 YDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCI 335
           YDVF+NIRDDEAEHCKTMKACQTHGNL SPH    D    ED++GC +  ADC GIVDC+
Sbjct: 274 YDVFVNIRDDEAEHCKTMKACQTHGNLMSPH---HDTTSTEDDTGCSLPPADCAGIVDCV 330

Query: 336 KKAVA 340
            KA++
Sbjct: 331 GKALS 335


>gi|115461198|ref|NP_001054199.1| Os04g0668900 [Oryza sativa Japonica Group]
 gi|21105122|gb|AAC35554.3| oxidase [Oryza sativa Japonica Group]
 gi|32488386|emb|CAE02811.1| OSJNBa0043A12.16 [Oryza sativa Japonica Group]
 gi|113565770|dbj|BAF16113.1| Os04g0668900 [Oryza sativa Japonica Group]
 gi|215695465|dbj|BAG90652.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195789|gb|EEC78216.1| hypothetical protein OsI_17850 [Oryza sativa Indica Group]
 gi|222629739|gb|EEE61871.1| hypothetical protein OsJ_16557 [Oryza sativa Japonica Group]
          Length = 336

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/311 (66%), Positives = 243/311 (78%), Gaps = 9/311 (2%)

Query: 31  LRFNPPSSPRSLSRNFCRVQATILQDEEEK--VVVEESSPLKNFPNDDEPPETGSASALE 88
           LR + P      +R   R +A   Q E+E+  V VEES P +    +  PP+    +A E
Sbjct: 29  LRAHRPRVGTVATRRVFRAEAMRTQREKEQTEVAVEESFPFR----ETAPPDEPLVTAEE 84

Query: 89  KWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGW 148
            WV+K EQSVNI LTESVI +LD LYRDR+YARFFVLETIARVPYFAFISVLHMYE+FGW
Sbjct: 85  SWVVKLEQSVNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGW 144

Query: 149 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
           WRRADY+KVHFAESWNE HHLLIMEELGGN+ W DRFLA+  A  YYF+TV MY++SPRM
Sbjct: 145 WRRADYIKVHFAESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRM 204

Query: 209 AYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSR 268
           AYHFSECVE HA+ TYDKFIK   ++LKK+PAP  A+ YY   DLYLFDEFQTAR+P SR
Sbjct: 205 AYHFSECVERHAYSTYDKFIKLHEDELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSR 264

Query: 269 RPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADC 328
           RPKI+NLYDVF+NIRDDEAEHCKTMKACQTHGNLRSPHS  +     E ++ C++ + DC
Sbjct: 265 RPKIDNLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSMQK---CLETDTECVIPEDDC 321

Query: 329 EGIVDCIKKAV 339
           EGIVDC+KK++
Sbjct: 322 EGIVDCVKKSL 332


>gi|359359056|gb|AEV40963.1| putative immutans protein [Oryza punctata]
 gi|359359107|gb|AEV41013.1| putative immutans protein [Oryza minuta]
          Length = 338

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/299 (68%), Positives = 239/299 (79%), Gaps = 9/299 (3%)

Query: 43  SRNFCRVQATILQDEEEK--VVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNI 100
           +R   R +A   Q E+E+  V VEES P +    +  PP+    +A E WV+K EQSVNI
Sbjct: 43  TRRVFRAEAMKTQREKEQTEVAVEESFPFR----ETAPPDEPLITAEESWVVKLEQSVNI 98

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
            LTESVI +LD LYRDR+YARFFVLETIARVPYFAFISVLHMYE+FGWWRRADY+KVHFA
Sbjct: 99  FLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFA 158

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE HHLLIMEELGGN+ W DRFLA+  A  YYF+TV MY++SPRMAYHFSECVE HA
Sbjct: 159 ESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHA 218

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           + TYDKFIK   E+LKK+PAP  A+ YY   DLYLFDEFQTAR+P SRRPKI+NLYDVF+
Sbjct: 219 YSTYDKFIKLHEEELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFV 278

Query: 281 NIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAV 339
           NIRDDEAEHCKTMKACQTHGNLRSPHS  +     E ++ C++ + DCEGIVDC+KK++
Sbjct: 279 NIRDDEAEHCKTMKACQTHGNLRSPHSMQK---CLETDTECVIPEDDCEGIVDCVKKSL 334


>gi|359359202|gb|AEV41106.1| putative immutans protein [Oryza officinalis]
          Length = 347

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/302 (68%), Positives = 238/302 (78%), Gaps = 12/302 (3%)

Query: 43  SRNFCRVQATILQDEEEK--VVVEESSPLKNFPNDDEPPETGS---ASALEKWVIKFEQS 97
           +R   R +A   Q E+E+  V VEES P +    +  PPE       +A E WV+K EQS
Sbjct: 49  TRRVFRAEAMKTQREKEQTEVAVEESFPFR----ETAPPEGADEPLVTAEESWVVKLEQS 104

Query: 98  VNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKV 157
           VNI LTESVI +LD LYRDR+YARFFVLETIARVPYFAFISVLHMYE+FGWWRRADY+KV
Sbjct: 105 VNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKV 164

Query: 158 HFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVE 217
           HFAESWNE HHLLIMEELGGN+ W DRFLA+  A  YYF+TV MY++SPRMAYHFSECVE
Sbjct: 165 HFAESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVE 224

Query: 218 SHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYD 277
            HA+ TYDKFIK   E LKK+PAP  A+ YY   DLYLFDEFQTAR+P SRRPKI+NLYD
Sbjct: 225 RHAYSTYDKFIKLHEEDLKKLPAPEAALNYYLNDDLYLFDEFQTARVPCSRRPKIDNLYD 284

Query: 278 VFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKK 337
           VF+NIRDDEAEHCKTMKACQTHGNLRSPHS  +     E ++ C++ + DCEGIVDC+KK
Sbjct: 285 VFVNIRDDEAEHCKTMKACQTHGNLRSPHSMQK---CLETDTECVIPEDDCEGIVDCVKK 341

Query: 338 AV 339
           ++
Sbjct: 342 SL 343


>gi|359359155|gb|AEV41060.1| putative immutans protein [Oryza minuta]
          Length = 346

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/302 (68%), Positives = 238/302 (78%), Gaps = 12/302 (3%)

Query: 43  SRNFCRVQATILQDEEEK--VVVEESSPLKNFPNDDEPPETGS---ASALEKWVIKFEQS 97
           +R   R +A   Q E+E+  V VEES P +    +  PPE       +A E WV+K EQS
Sbjct: 48  TRRIFRAEAMKTQREKEQTEVAVEESFPFR----ETAPPEGADEPLVTAEESWVVKLEQS 103

Query: 98  VNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKV 157
           VNI LTESVI +LD LYRDR+YARFFVLETIARVPYFAFISVLHMYE+FGWWRRADY+KV
Sbjct: 104 VNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKV 163

Query: 158 HFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVE 217
           HFAESWNE HHLLIMEELGGN+ W DRFLA+  A  YYF+TV MY++SPRMAYHFSECVE
Sbjct: 164 HFAESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVE 223

Query: 218 SHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYD 277
            HA+ TYDKFIK   E LKK+PAP  A+ YY   DLYLFDEFQTAR+P SRRPKI+NLYD
Sbjct: 224 RHAYSTYDKFIKLHEEDLKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYD 283

Query: 278 VFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKK 337
           VF+NIRDDEAEHCKTMKACQTHGNLRSPHS  +     E ++ C++ + DCEGIVDC+KK
Sbjct: 284 VFVNIRDDEAEHCKTMKACQTHGNLRSPHSMQK---CLETDTECVIPEDDCEGIVDCVKK 340

Query: 338 AV 339
           ++
Sbjct: 341 SL 342


>gi|297745709|emb|CBI41031.3| unnamed protein product [Vitis vinifera]
          Length = 294

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/283 (70%), Positives = 227/283 (80%), Gaps = 9/283 (3%)

Query: 1   MMTTLSQ---TVSVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDE 57
           M  +LS     VSV S KA   + + SF++  +   +P SS R LSR F  VQATILQ+ 
Sbjct: 1   MAASLSSAVFVVSVPSLKAKKGRHLGSFSSPNSFHCSPLSSSRFLSRKFHSVQATILQEN 60

Query: 58  EEKVVVEESSPLKNFPNDDE------PPETGSASALEKWVIKFEQSVNILLTESVIMVLD 111
           EEKV VEES    +FP DD       P ++ S+S L +WVIKFEQS N+ LTESVI +LD
Sbjct: 61  EEKVTVEESFQSNSFPEDDSKGCSGAPQDSSSSSVLNRWVIKFEQSFNVFLTESVIKILD 120

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
            LY DRDYARFFVLETIARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI
Sbjct: 121 TLYHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 180

Query: 172 MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQ 231
           MEELGGNAWWFDRFLAQHIA+ YYF+TVFMYV+SPRMAYH SECVESHA+ETYDKFIK+Q
Sbjct: 181 MEELGGNAWWFDRFLAQHIAIFYYFMTVFMYVLSPRMAYHLSECVESHAYETYDKFIKSQ 240

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIEN 274
           G++LK +PAP +A++YYT GDLYLFDEFQTAR P SRRPKI N
Sbjct: 241 GDELKNLPAPEIAVRYYTEGDLYLFDEFQTARAPKSRRPKIGN 283


>gi|359496713|ref|XP_002271078.2| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like,
           partial [Vitis vinifera]
          Length = 281

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/281 (70%), Positives = 226/281 (80%), Gaps = 9/281 (3%)

Query: 1   MMTTLSQ---TVSVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDE 57
           M  +LS     VSV S KA   + + SF++  +   +P SS R LSR F  VQATILQ+ 
Sbjct: 1   MAASLSSAVFVVSVPSLKAKKGRHLGSFSSPNSFHCSPLSSSRFLSRKFHSVQATILQEN 60

Query: 58  EEKVVVEESSPLKNFPNDDE------PPETGSASALEKWVIKFEQSVNILLTESVIMVLD 111
           EEKV VEES    +FP DD       P ++ S+S L +WVIKFEQS N+ LTESVI +LD
Sbjct: 61  EEKVTVEESFQSNSFPEDDSKGCSGAPQDSSSSSVLNRWVIKFEQSFNVFLTESVIKILD 120

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
            LY DRDYARFFVLETIARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI
Sbjct: 121 TLYHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 180

Query: 172 MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQ 231
           MEELGGNAWWFDRFLAQHIA+ YYF+TVFMYV+SPRMAYH SECVESHA+ETYDKFIK+Q
Sbjct: 181 MEELGGNAWWFDRFLAQHIAIFYYFMTVFMYVLSPRMAYHLSECVESHAYETYDKFIKSQ 240

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272
           G++LK +PAP +A++YYT GDLYLFDEFQTAR P SRRPKI
Sbjct: 241 GDELKNLPAPEIAVRYYTEGDLYLFDEFQTARAPKSRRPKI 281


>gi|238013864|gb|ACR37967.1| unknown [Zea mays]
 gi|414584890|tpg|DAA35461.1| TPA: alternative oxidase [Zea mays]
          Length = 341

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/300 (65%), Positives = 235/300 (78%), Gaps = 14/300 (4%)

Query: 48  RVQATILQDEEEK--VVVEESSPLKNF--PND----DEPPETGSASALEKWVIKFEQSVN 99
           RV+A   Q E+++  V VEE +P++    P D    D+P      S+ E WV++ EQSVN
Sbjct: 46  RVEAIWKQQEKQRAEVSVEEPAPVREAAAPLDGVGADDP---MVPSSDESWVVRLEQSVN 102

Query: 100 ILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHF 159
           I LTESVI++L+ +YRDR+YARFFVLETIARVPYFAFISVLHMYE+FGWWRRADYLKVHF
Sbjct: 103 IFLTESVIILLNTVYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYLKVHF 162

Query: 160 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESH 219
           A+S NE HHLLIMEELGGNA W D FLA+ +A  YYF+TV MY++SPRMAYHFSECVE H
Sbjct: 163 AQSLNEFHHLLIMEELGGNAIWIDCFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERH 222

Query: 220 AFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVF 279
           A+ TYDKF+K   E+LK +PAP  A+ YY   DLYLFDEFQT R+P SRRPKI+NLYDVF
Sbjct: 223 AYSTYDKFLKLHEEELKTLPAPEAALNYYLNEDLYLFDEFQTTRIPCSRRPKIDNLYDVF 282

Query: 280 LNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAV 339
           +NIRDDEAEHCKTMKACQTHG LRSPHS        E  + C++ + DCEGIVDC+KK++
Sbjct: 283 VNIRDDEAEHCKTMKACQTHGTLRSPHSMPN---CLEAATECVIPENDCEGIVDCVKKSL 339


>gi|242077584|ref|XP_002448728.1| hypothetical protein SORBIDRAFT_06g032180 [Sorghum bicolor]
 gi|241939911|gb|EES13056.1| hypothetical protein SORBIDRAFT_06g032180 [Sorghum bicolor]
          Length = 351

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/302 (64%), Positives = 238/302 (78%), Gaps = 16/302 (5%)

Query: 48  RVQATILQDEEEK--VVVEESSPLKNF--PND----DEPPETGSASALEKWVIKFEQSVN 99
           RV+A   Q E+++  V VEES+P++    P D    D+P     AS+ E WV++ EQS N
Sbjct: 54  RVEAIRTQQEKQRTEVPVEESAPVRGAAAPLDGVGADDP---MVASSEESWVVRLEQSFN 110

Query: 100 ILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHF 159
           I  TES+IM+LD +YRDR+YARFFVLETIARVPYF FISVLH+YE+FGWWRRADY+KVHF
Sbjct: 111 IFATESMIMILDGVYRDRNYARFFVLETIARVPYFGFISVLHLYETFGWWRRADYIKVHF 170

Query: 160 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESH 219
           A+SWNE HHLLIMEELGGNA W DRFLA+ +A  YYF+TV MY++SPRMAYHFSECVE H
Sbjct: 171 AQSWNEFHHLLIMEELGGNALWIDRFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERH 230

Query: 220 AFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVF 279
           A+ TYDKF+K   E+LK++PAP  A+ YY   DLYLFDEFQTA +P SRRPKI+NLYDVF
Sbjct: 231 AYSTYDKFLKLHEEELKRLPAPEAALNYYLNEDLYLFDEFQTAGVPCSRRPKIDNLYDVF 290

Query: 280 LNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQA--DCEGIVDCIKK 337
           +N+RDDEAEHCKTMKACQTHGNLRSPHS  +     E +S C++ +   DCEG VD +KK
Sbjct: 291 VNVRDDEAEHCKTMKACQTHGNLRSPHSMLD---CLEVDSECVIPEPEDDCEGFVDSVKK 347

Query: 338 AV 339
           ++
Sbjct: 348 SL 349


>gi|357166646|ref|XP_003580780.1| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like
           [Brachypodium distachyon]
          Length = 368

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/330 (59%), Positives = 235/330 (71%), Gaps = 10/330 (3%)

Query: 13  SNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNF 72
           +   + L       T K  R  P  +     R    ++  +   EE   V E  +P    
Sbjct: 42  ATGGLGLSPAVLLLTRKNGRRFPLGATARTQREKAELETDVAAVEESFPVRETGAPEGAA 101

Query: 73  PNDDE---PPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIA 129
            NDD+   PP          WV++ EQS NI LT+S+I +LD LY DR+YARFFVLETIA
Sbjct: 102 DNDDDGALPPAEDVG-----WVVRLEQSFNIFLTDSIITILDGLYGDRNYARFFVLETIA 156

Query: 130 RVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQH 189
           RVPYFAFISVLHMYE+FGWWRRADY+KVHFAES NE HHLLIMEELGGN+   DRFLA+ 
Sbjct: 157 RVPYFAFISVLHMYETFGWWRRADYIKVHFAESMNEFHHLLIMEELGGNSELVDRFLARF 216

Query: 190 IAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYT 249
            A  YYF+TV MY++SPRMAYHFSECVE HA+ TYDKF+K  GE+LKK+PAP  AI YY 
Sbjct: 217 SAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDKFLKLNGEELKKLPAPEAAINYYM 276

Query: 250 GGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYS 309
             DLYLFDEFQT+R+P SRRPK++NLYDVF+NIRDDEAEHCKTMKACQTHGNLRSPHS  
Sbjct: 277 NEDLYLFDEFQTSRVPCSRRPKVDNLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSME 336

Query: 310 EDDFGCEDESGCIVAQADCEGIVDCIKKAV 339
                 E ++ C+V + DCEGI+DC+KK++
Sbjct: 337 RR--VDETDAECVVPENDCEGIMDCVKKSL 364


>gi|90399151|emb|CAJ86080.1| H0818H01.2 [Oryza sativa Indica Group]
 gi|90399243|emb|CAJ86199.1| B0811B10.18 [Oryza sativa Indica Group]
          Length = 320

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/311 (62%), Positives = 228/311 (73%), Gaps = 25/311 (8%)

Query: 31  LRFNPPSSPRSLSRNFCRVQATILQDEEEK--VVVEESSPLKNFPNDDEPPETGSASALE 88
           LR + P      +R   R +A   Q E+E+  V VEES P +    +  PP+    +A E
Sbjct: 29  LRAHRPRVGTVATRRVFRAEAMRTQREKEQTEVAVEESFPFR----ETAPPDEPLVTAEE 84

Query: 89  KWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGW 148
            WV+K EQSVNI LTESVI +LD LYRDR+YARFFVLETIARVPYFAFISVLHMYE+FGW
Sbjct: 85  SWVVKLEQSVNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISVLHMYETFGW 144

Query: 149 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
           WRRADY+KVHFAESWNE HHLLIMEELGGN+ W DRFLA+  A  YYF+TV MY++SPRM
Sbjct: 145 WRRADYIKVHFAESWNEFHHLLIMEELGGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRM 204

Query: 209 AYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSR 268
           AYHFSECVE HA+ TYDKFIK   ++LKK+PAP  A+ YY   DLYLFD           
Sbjct: 205 AYHFSECVERHAYSTYDKFIKLHEDELKKLPAPEAALNYYLNEDLYLFD----------- 253

Query: 269 RPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADC 328
                NLYDVF+NIRDDEAEHCKTMKACQTHGNLRSPHS  +     E ++ C++ + DC
Sbjct: 254 -----NLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSMQK---CLETDTECVIPEDDC 305

Query: 329 EGIVDCIKKAV 339
           EGIVDC+KK++
Sbjct: 306 EGIVDCVKKSL 316


>gi|226501174|ref|NP_001150780.1| immutans protein [Zea mays]
 gi|195641770|gb|ACG40353.1| immutans protein [Zea mays]
          Length = 343

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/311 (60%), Positives = 234/311 (75%), Gaps = 12/311 (3%)

Query: 38  SPRSLSRNFCRVQATILQDEEEK--VVVEESSPLKNFPNDDEPPETGSA-------SALE 88
           +P + +    RV+A   Q E+++  V VEES+P ++          G+        S+ +
Sbjct: 34  APATAAWRRLRVEAIRTQREKQRAEVPVEESAPARDAAAPLAGNGAGAGADGSVVPSSDD 93

Query: 89  KWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGW 148
            WV+K EQS NI  T+SVIMVL  +Y DR YARFF LETIARVPYFAFISVLH+Y +FGW
Sbjct: 94  SWVVKLEQSFNIFATDSVIMVLKGVYGDRYYARFFALETIARVPYFAFISVLHLYATFGW 153

Query: 149 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
           WRRADY+KVHFA+SWNE HHLLIMEELGG++ WFD FLA+ +A  YYF+TV MY++SPRM
Sbjct: 154 WRRADYIKVHFAQSWNEFHHLLIMEELGGDSLWFDCFLARFMAFFYYFMTVAMYMLSPRM 213

Query: 209 AYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSR 268
           AYHFSECVE HA+ TYD+F+K   E+LK++PAP  A+ YY   DLYLFDEFQ +R P SR
Sbjct: 214 AYHFSECVERHAYSTYDEFLKLHEEELKRLPAPEAALNYYMNEDLYLFDEFQASRTPGSR 273

Query: 269 RPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADC 328
           RPKI+NLYDVF+NIR+DEAEHCKTMK CQTHGNLRSPHS        ED++ C++ + DC
Sbjct: 274 RPKIDNLYDVFVNIREDEAEHCKTMKTCQTHGNLRSPHSTPN---CLEDDTECVIPENDC 330

Query: 329 EGIVDCIKKAV 339
           EGIVDC+KK++
Sbjct: 331 EGIVDCVKKSL 341


>gi|224031555|gb|ACN34853.1| unknown [Zea mays]
 gi|414584889|tpg|DAA35460.1| TPA: alternative oxidase [Zea mays]
          Length = 339

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/299 (61%), Positives = 228/299 (76%), Gaps = 10/299 (3%)

Query: 48  RVQATILQDEEEKVVVEESSPLKNFPNDDEPPETGSA-------SALEKWVIKFEQSVNI 100
           R++   ++ +  +V VEES+P ++          G+        S+ + WV+K EQS NI
Sbjct: 42  RLRVEAIRTQRTEVPVEESAPARDAAAAAPLDGNGAGADGSVVPSSDDSWVVKLEQSFNI 101

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
             T+SVIMVL  +Y DR YARFF LETIARVPYFAFISVLH+Y +FGWWRRADY+KVHFA
Sbjct: 102 FATDSVIMVLKGVYGDRYYARFFALETIARVPYFAFISVLHLYATFGWWRRADYIKVHFA 161

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           +SWNE HHLLIMEELGG++ WFD FLA+ +A  YYF+TV MY++SPRMAYHFSECVE HA
Sbjct: 162 QSWNEFHHLLIMEELGGDSLWFDCFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHA 221

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           + TYD+F+K   E+LK++PAP  A+ YY   DLYLFDEFQ +R P SRRPKI+NLYDVF+
Sbjct: 222 YSTYDEFLKLHEEELKRLPAPEAALNYYMNEDLYLFDEFQASRTPGSRRPKIDNLYDVFV 281

Query: 281 NIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAV 339
           NIR+DEAEHCKTMK CQTHGNLRSPHS        ED++ C++ + DCEGIVDC+KK++
Sbjct: 282 NIREDEAEHCKTMKTCQTHGNLRSPHSTPN---CLEDDTECVIPENDCEGIVDCVKKSL 337


>gi|302796591|ref|XP_002980057.1| hypothetical protein SELMODRAFT_112145 [Selaginella moellendorffii]
 gi|300152284|gb|EFJ18927.1| hypothetical protein SELMODRAFT_112145 [Selaginella moellendorffii]
          Length = 279

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/264 (68%), Positives = 207/264 (78%), Gaps = 5/264 (1%)

Query: 82  GSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH 141
            S+   E W+I+ EQ  N+  T+ VI +LD LY DRDYARF+VLETIARVPYFAF+SVLH
Sbjct: 1   SSSDKPESWIIRVEQGFNLFATDFVIAILDRLYADRDYARFYVLETIARVPYFAFVSVLH 60

Query: 142 MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM 201
           MYESFGWWRRADYLKVHFAESWNE+HHLL+ME LGG+  WFDRFLAQHIAVAYYF+T  M
Sbjct: 61  MYESFGWWRRADYLKVHFAESWNELHHLLVMEALGGDERWFDRFLAQHIAVAYYFLTSLM 120

Query: 202 YVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQT 261
           Y ISPRMAYHFSECVE HAF TYDKFIKA GE+LKK+PAP VA+ YYT GDLY+FDEFQT
Sbjct: 121 YTISPRMAYHFSECVEKHAFSTYDKFIKAHGEELKKLPAPQVAVDYYTKGDLYMFDEFQT 180

Query: 262 ARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDE--- 318
            RLP +RRP+++NLYDVF+NIR+DE EHCKTMKACQ  GNL SPHS    D   E +   
Sbjct: 181 DRLPETRRPRVDNLYDVFVNIREDEWEHCKTMKACQVRGNLHSPHSTKLKDLPDEAQDEK 240

Query: 319 --SGCIVAQADCEGIVDCIKKAVA 340
                    A+C GIV+C   A +
Sbjct: 241 EDGEDEEEVAECAGIVECAITATS 264


>gi|302811522|ref|XP_002987450.1| hypothetical protein SELMODRAFT_126113 [Selaginella moellendorffii]
 gi|300144856|gb|EFJ11537.1| hypothetical protein SELMODRAFT_126113 [Selaginella moellendorffii]
          Length = 280

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/265 (67%), Positives = 209/265 (78%), Gaps = 5/265 (1%)

Query: 81  TGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVL 140
           + S+   E W+I+ EQ  N+  T+ VI +LD LY DRDYARF+VLETIARVPYFAF+SVL
Sbjct: 1   SSSSDKPESWIIRVEQGFNLFATDFVIAILDRLYADRDYARFYVLETIARVPYFAFVSVL 60

Query: 141 HMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVF 200
           HMYESFGWWRRADYLKVHFAESWNE+HHLL+ME LGG+  WFDRFLAQHIAVAYYF+T  
Sbjct: 61  HMYESFGWWRRADYLKVHFAESWNELHHLLVMEALGGDERWFDRFLAQHIAVAYYFLTSL 120

Query: 201 MYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQ 260
           MY ISPRMAYHFSECVE HAF TYDKFIKA GE+LKK+PAP VA+ YYT GDLY+FDEFQ
Sbjct: 121 MYTISPRMAYHFSECVEKHAFSTYDKFIKAHGEELKKLPAPQVAVDYYTKGDLYMFDEFQ 180

Query: 261 TARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDF-----GC 315
           T RLP +RRP+++NLYDVF+NIR+DE EHCKTMKACQ  GNL SPHS    D        
Sbjct: 181 TDRLPETRRPRVDNLYDVFVNIREDEWEHCKTMKACQVRGNLHSPHSTKLKDLPDEAQDE 240

Query: 316 EDESGCIVAQADCEGIVDCIKKAVA 340
           +++       A+C GIV+C   A +
Sbjct: 241 KEDEEDEEEVAECAGIVECAITATS 265


>gi|168043241|ref|XP_001774094.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674640|gb|EDQ61146.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 240

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 172/230 (74%), Positives = 199/230 (86%)

Query: 83  SASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM 142
           ++  LE WVI+ E++ N L T++VI VLD  Y++RDYARF+VLETIARVPYFAF+SVLHM
Sbjct: 1   TSQGLEAWVIRGEKAFNQLATDAVIQVLDIFYKNRDYARFYVLETIARVPYFAFVSVLHM 60

Query: 143 YESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMY 202
           YESFGWWRR+DY+KVHFAESWNE+HHLL ME LGG+  W DRFLAQHIAV YYF+TV MY
Sbjct: 61  YESFGWWRRSDYIKVHFAESWNELHHLLTMEALGGDERWVDRFLAQHIAVGYYFMTVVMY 120

Query: 203 VISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTA 262
           ++SPRMAYHFSECVE HAF TYD+FIK  GE+LKK+PAP VA+KYYT GDLYLFDEFQT 
Sbjct: 121 LLSPRMAYHFSECVEKHAFHTYDEFIKLHGEELKKLPAPEVAVKYYTSGDLYLFDEFQTD 180

Query: 263 RLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDD 312
           R PN+RRPKI+NLYDVF NIR+DEAEHCKTM ACQT GNLRSPH+  + D
Sbjct: 181 RTPNTRRPKIDNLYDVFYNIREDEAEHCKTMLACQTRGNLRSPHNAMQYD 230


>gi|168027826|ref|XP_001766430.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682339|gb|EDQ68758.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 245

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/225 (76%), Positives = 194/225 (86%)

Query: 83  SASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM 142
           SA  LEK VIK EQ+ N L T++VI VLD  Y++RDYARF+VLETIAR+PYFAF+SVL+M
Sbjct: 1   SAKGLEKRVIKGEQAFNQLATDAVIKVLDVFYKNRDYARFYVLETIARIPYFAFVSVLNM 60

Query: 143 YESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMY 202
           YESFGWWRRADYLKVHFAESWNE+HHLL ME LGG+  W DRFLAQHIAV YYF+TV MY
Sbjct: 61  YESFGWWRRADYLKVHFAESWNELHHLLTMEALGGDERWVDRFLAQHIAVGYYFMTVVMY 120

Query: 203 VISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTA 262
           ++SPRMAYHFSECV+ HAF TYD+FI    E+LK +PAP VA+KYYT GDLYLFDEFQTA
Sbjct: 121 LLSPRMAYHFSECVKKHAFHTYDEFINLNAEELKNLPAPEVAVKYYTSGDLYLFDEFQTA 180

Query: 263 RLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHS 307
             PN+R+PK+ENLYDVF NIR+DEAEHCKTM ACQT GNLRSPHS
Sbjct: 181 CPPNTRQPKVENLYDVFCNIREDEAEHCKTMLACQTRGNLRSPHS 225


>gi|414584888|tpg|DAA35459.1| TPA: ethylene-responsive transcription factor 3 [Zea mays]
          Length = 547

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 156/248 (62%), Positives = 185/248 (74%), Gaps = 27/248 (10%)

Query: 85  SALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYE 144
           S+ + WV+K EQS NI  T+SVIMVL  +Y DR YARFF LETIARVPYFAFISVLH+Y 
Sbjct: 323 SSDDSWVVKLEQSFNIFATDSVIMVLKGVYGDRYYARFFALETIARVPYFAFISVLHLYA 382

Query: 145 SFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVI 204
           +FGWWRRADY+KVHFA+SWNE HHLLIMEELGG++ WFD FLA+ +A  YYF+TV MY++
Sbjct: 383 TFGWWRRADYIKVHFAQSWNEFHHLLIMEELGGDSLWFDCFLARFMAFFYYFMTVAMYML 442

Query: 205 SPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARL 264
           SPRMAYHFSECVE HA+ TYD+F+K                           DEFQ +R 
Sbjct: 443 SPRMAYHFSECVERHAYSTYDEFLKLHE------------------------DEFQASRT 478

Query: 265 PNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVA 324
           P SRRPKI+NLYDVF+NIR+DEAEHCKTMK CQTHGNLRSPHS        ED++ C++ 
Sbjct: 479 PGSRRPKIDNLYDVFVNIREDEAEHCKTMKTCQTHGNLRSPHSTPN---CLEDDTECVIP 535

Query: 325 QADCEGIV 332
           + DCEG+V
Sbjct: 536 ENDCEGVV 543


>gi|9837152|gb|AAG00450.1|AF274001_1 oxidase [Triticum aestivum]
          Length = 224

 Score =  323 bits (829), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 147/197 (74%), Positives = 171/197 (86%)

Query: 90  WVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWW 149
           WV++FEQS N+ LT++VI +LD LYRDRDYARFFVLETIARVPYFAFISVLH+YE+FGW 
Sbjct: 22  WVVRFEQSFNVFLTDTVIFILDILYRDRDYARFFVLETIARVPYFAFISVLHLYETFGWS 81

Query: 150 RRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMA 209
           RRAD +KVHFAES NE HHLLIME LGGN+ W DRFLA+  A  YYFVTV MY++SPRMA
Sbjct: 82  RRADNIKVHFAESMNEFHHLLIMEALGGNSVWLDRFLARFSAFFYYFVTVGMYMLSPRMA 141

Query: 210 YHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRR 269
           YHFSECVE HA+ TYDKF+K  GE+LKK+PAP VA+ YY   DLY+FDEFQT+R PNSRR
Sbjct: 142 YHFSECVERHAYSTYDKFLKLNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSRR 201

Query: 270 PKIENLYDVFLNIRDDE 286
           PK++NLYDVF+N+RDDE
Sbjct: 202 PKVDNLYDVFVNVRDDE 218


>gi|308809309|ref|XP_003081964.1| unnamed protein product [Ostreococcus tauri]
          Length = 260

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 149/240 (62%), Positives = 176/240 (73%), Gaps = 10/240 (4%)

Query: 105 SVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWN 164
           S + V+D LY  R YARF  LET+ARVPYF+F+SVLH+YE+FGWWRRADYLKVHFAE+ N
Sbjct: 1   SAVAVIDYLYAGRSYARFHALETVARVPYFSFMSVLHLYETFGWWRRADYLKVHFAETMN 60

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E HHLLIME LGG   W DRF AQH+AVAYY++ V  Y++SPR AY+  E VESHA+ TY
Sbjct: 61  EYHHLLIMESLGGAELWRDRFFAQHVAVAYYWICVAQYLVSPRWAYNLLEQVESHAYATY 120

Query: 225 DKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           DKF++A  E LKK PAP VA+ YYT GDLYLFDEFQT     +RRPKI+NLYDVF+N+R+
Sbjct: 121 DKFLEANEEVLKKTPAPRVAVAYYTKGDLYLFDEFQTGE-KGARRPKIDNLYDVFVNVRN 179

Query: 285 DEAEHCKTMKACQTHGN-LRSPHSYSE--------DDFGCEDESGCIVAQADCEGIVDCI 335
           DEAEH KTM+ CQ  GN LRSP S            D  CE E    +A   CEG+VDC+
Sbjct: 180 DEAEHMKTMEFCQRPGNGLRSPSSKQALFAMSGECGDEVCETEIEEDLAGRSCEGLVDCV 239


>gi|116060431|emb|CAL55767.1| unnamed protein product, partial [Ostreococcus tauri]
          Length = 267

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 149/240 (62%), Positives = 176/240 (73%), Gaps = 10/240 (4%)

Query: 105 SVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWN 164
           S + V+D LY  R YARF  LET+ARVPYF+F+SVLH+YE+FGWWRRADYLKVHFAE+ N
Sbjct: 8   SAVAVIDYLYAGRSYARFHALETVARVPYFSFMSVLHLYETFGWWRRADYLKVHFAETMN 67

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E HHLLIME LGG   W DRF AQH+AVAYY++ V  Y++SPR AY+  E VESHA+ TY
Sbjct: 68  EYHHLLIMESLGGAELWRDRFFAQHVAVAYYWICVAQYLVSPRWAYNLLEQVESHAYATY 127

Query: 225 DKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           DKF++A  E LKK PAP VA+ YYT GDLYLFDEFQT     +RRPKI+NLYDVF+N+R+
Sbjct: 128 DKFLEANEEVLKKTPAPRVAVAYYTKGDLYLFDEFQTGE-KGARRPKIDNLYDVFVNVRN 186

Query: 285 DEAEHCKTMKACQTHGN-LRSPHSYSE--------DDFGCEDESGCIVAQADCEGIVDCI 335
           DEAEH KTM+ CQ  GN LRSP S            D  CE E    +A   CEG+VDC+
Sbjct: 187 DEAEHMKTMEFCQRPGNGLRSPSSKQALFAMSGECGDEVCETEIEEDLAGRSCEGLVDCV 246


>gi|427419241|ref|ZP_18909424.1| Alternative oxidase [Leptolyngbya sp. PCC 7375]
 gi|425761954|gb|EKV02807.1| Alternative oxidase [Leptolyngbya sp. PCC 7375]
          Length = 219

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 127/209 (60%), Positives = 165/209 (78%), Gaps = 3/209 (1%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAE 161
           L   ++ V++ +Y++R Y RF+VLET+ARVPYF+++SVLH+YE+ GWWR+ D+LKVHFAE
Sbjct: 5   LVGILVFVINTVYKNRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKVDWLKVHFAE 64

Query: 162 SWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221
           SWNE+HHLLIMEELGG+  W DRFLA+H+A+ YY++ V +Y ++PR AYHF E VE HA+
Sbjct: 65  SWNELHHLLIMEELGGSQQWIDRFLARHVALLYYWIIVAIYAVNPRAAYHFMELVEEHAY 124

Query: 222 ETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLN 281
            +YDKF+++    LK+ PAP VAI YY  GDLY+FDEFQTAR P  RRP+I+NLYDVF+ 
Sbjct: 125 ASYDKFLQSNEAALKQEPAPQVAISYYRDGDLYMFDEFQTARPPTERRPQIKNLYDVFVA 184

Query: 282 IRDDEAEHCKTMKACQ---THGNLRSPHS 307
           IRDDE EH KTM ACQ       L+SPH+
Sbjct: 185 IRDDEMEHVKTMAACQQPDAQLTLQSPHT 213


>gi|428223604|ref|YP_007107701.1| plastoquinol oxidase immutans [Geitlerinema sp. PCC 7407]
 gi|427983505|gb|AFY64649.1| plastoquinol oxidase immutans [Geitlerinema sp. PCC 7407]
          Length = 233

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 132/213 (61%), Positives = 162/213 (76%), Gaps = 3/213 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
           +L   ++ V++ LYRDR Y RF+VLET+ARVPYFA++SVLH+YES G WR+AD+LKVHFA
Sbjct: 4   ILVGILVFVINTLYRDRPYPRFYVLETVARVPYFAYMSVLHLYESLGLWRKADWLKVHFA 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE+HHLLIME LGGN  W DRF+A+H A+AYY++ V +Y+ SPR AYHF E VE HA
Sbjct: 64  ESWNELHHLLIMESLGGNDRWVDRFVARHAALAYYWLVVLLYLFSPRSAYHFMELVEQHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           + TYD F++     LK  PAPAVA+ YY  GDLY+FDEFQT   P +RRP+I +LYDVF+
Sbjct: 124 YHTYDVFLQENEAALKAEPAPAVAVNYYREGDLYMFDEFQTGSKPETRRPEIRHLYDVFV 183

Query: 281 NIRDDEAEHCKTMKACQ---THGNLRSPHSYSE 310
           NIRDDE EH KTM ACQ        RSPH+  E
Sbjct: 184 NIRDDEMEHVKTMVACQRPDAQKTFRSPHAVPE 216


>gi|427724949|ref|YP_007072226.1| plastoquinol oxidase immutans [Leptolyngbya sp. PCC 7376]
 gi|427356669|gb|AFY39392.1| plastoquinol oxidase immutans [Leptolyngbya sp. PCC 7376]
          Length = 235

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 128/210 (60%), Positives = 168/210 (80%), Gaps = 3/210 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
           +L   ++ V++ +Y +R Y RF+VLET+ARVPYF+++SVLH+YE+ G+WR+AD+LK+HFA
Sbjct: 4   ILVSILVFVINKVYANRPYPRFYVLETVARVPYFSYLSVLHLYETLGFWRKADWLKIHFA 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE+HHLLIME LGG+ +W DR LA+ +A+AYY++ V +Y++SPR AY F E VE HA
Sbjct: 64  ESWNELHHLLIMESLGGSNFWLDRALAKTVALAYYWIIVGIYIVSPRSAYRFMELVEEHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           + TYDKF+KA+ E LK  PAPA+AI YY  GDLYLFDEFQT ++P  RRPK++NLYDVF+
Sbjct: 124 YATYDKFLKAEAETLKGQPAPAIAINYYRDGDLYLFDEFQTGQIPEHRRPKVDNLYDVFV 183

Query: 281 NIRDDEAEHCKTMKACQT-HGNLR--SPHS 307
            IRDDE EH KTM ACQ  + NL   SPH+
Sbjct: 184 AIRDDEQEHVKTMSACQQDNANLMVVSPHA 213


>gi|428307127|ref|YP_007143952.1| plastoquinol oxidase immutans [Crinalium epipsammum PCC 9333]
 gi|428248662|gb|AFZ14442.1| plastoquinol oxidase immutans [Crinalium epipsammum PCC 9333]
          Length = 240

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 133/216 (61%), Positives = 162/216 (75%), Gaps = 4/216 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
            L + ++ V++ LYRDR Y RF+VLET+ARVPYF+F+SVLH+YE+ GWWR+AD+LKVHFA
Sbjct: 4   FLVDVLVFVINTLYRDRAYQRFYVLETVARVPYFSFLSVLHLYETLGWWRKADWLKVHFA 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE+HHLLIME LGGN  W DR  AQ  A+ YY+V V +Y++SPR AY+F + VE HA
Sbjct: 64  ESWNELHHLLIMESLGGNKHWGDRLFAQTTALVYYWVVVALYLVSPRTAYNFMQLVEEHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
             TY+ F+K    +LK  PAP VAI YY  GDLYLFDEFQT   P SRRP ++NLYDVF+
Sbjct: 124 HHTYETFVKEHEAELKAAPAPLVAINYYRDGDLYLFDEFQTGVKPESRRPAVDNLYDVFV 183

Query: 281 NIRDDEAEHCKTMKACQ---THGNLRSPHS-YSEDD 312
           NIRDDEAEH KTM ACQ        +SPH+  S DD
Sbjct: 184 NIRDDEAEHVKTMLACQKLDAQKTFKSPHTVLSPDD 219


>gi|443311406|ref|ZP_21041035.1| Alternative oxidase [Synechocystis sp. PCC 7509]
 gi|442778603|gb|ELR88867.1| Alternative oxidase [Synechocystis sp. PCC 7509]
          Length = 247

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 130/210 (61%), Positives = 160/210 (76%), Gaps = 3/210 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
           LL   +  +L+  YR R Y RF+VLET+ARVPYFAF SVLH+YE+ GWWR+AD++KVHFA
Sbjct: 4   LLVNILEALLNTFYRTRIYPRFYVLETVARVPYFAFTSVLHLYETMGWWRKADWIKVHFA 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE+HHLLI E LGGN +W DRF+A   A  YY++ VF+YV+SPR AY+F + VE HA
Sbjct: 64  ESWNELHHLLIAESLGGNQYWIDRFVAHTGAFVYYWIVVFVYVLSPRHAYNFMQQVEEHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           + TY+ FIK  G++LK +PAP +AI YY  GDLYLFDEFQT R+P  RRPKIENLYDVF+
Sbjct: 124 YHTYNAFIKEHGDELKTLPAPQIAINYYQDGDLYLFDEFQTTRVPQERRPKIENLYDVFV 183

Query: 281 NIRDDEAEHCKTMKACQ---THGNLRSPHS 307
            IR+DE EH KTM ACQ        +SPH+
Sbjct: 184 AIREDELEHVKTMIACQQPDAQQTFQSPHA 213


>gi|428219613|ref|YP_007104078.1| plastoquinol oxidase immutans [Pseudanabaena sp. PCC 7367]
 gi|427991395|gb|AFY71650.1| plastoquinol oxidase immutans [Pseudanabaena sp. PCC 7367]
          Length = 243

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 130/208 (62%), Positives = 164/208 (78%), Gaps = 3/208 (1%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAE 161
           L   ++ V++ LYRDR   RF+VLET+ARVPYFA++SVLH+YE+ G+WRRAD+LKVHFAE
Sbjct: 5   LVSILVFVINVLYRDRPIPRFYVLETVARVPYFAYLSVLHLYETLGFWRRADWLKVHFAE 64

Query: 162 SWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221
           SWNE+HHLLI EELGGN   FDR LA+  A+ YY++ V +YV++P+ AYHF E VE HA+
Sbjct: 65  SWNELHHLLIAEELGGNNNPFDRLLAKTAALVYYWIVVGIYVVNPKAAYHFMEMVEEHAY 124

Query: 222 ETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLN 281
            TYD+++K    +LK  PAPA+A+KYY  GDLYLFDEFQT ++ NSRRPK++NLYDVF+ 
Sbjct: 125 HTYDEYLKENEAELKSKPAPAIAVKYYRDGDLYLFDEFQTGQVANSRRPKVDNLYDVFVA 184

Query: 282 IRDDEAEHCKTMKACQ---THGNLRSPH 306
           IRDDEAEH KTM AC+       LRSPH
Sbjct: 185 IRDDEAEHVKTMSACKLDNGENTLRSPH 212


>gi|412987963|emb|CCO19359.1| predicted protein [Bathycoccus prasinos]
          Length = 393

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 143/286 (50%), Positives = 182/286 (63%), Gaps = 38/286 (13%)

Query: 91  VIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWR 150
           +I  E+  N L+ +S + V+D LY  RDY RF+ LETIARVPYF+F+SVLH+YESFGWWR
Sbjct: 70  LISLERQANKLIVDSAVFVIDKLYEGRDYPRFYALETIARVPYFSFLSVLHLYESFGWWR 129

Query: 151 RADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAY 210
           RADYLKVHFAE+ NE HHLLIME +GG   + DRF AQH+AV Y++V V +Y++SPRMAY
Sbjct: 130 RADYLKVHFAETMNEYHHLLIMEAMGGADSFKDRFFAQHVAVVYFWVAVLIYMVSPRMAY 189

Query: 211 HFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQT------ARL 264
           + SE VE HA+ TYD F+K + E+LK+ PA  VA+ Y+  GDLYLFDEFQT       + 
Sbjct: 190 NLSEQVEEHAYATYDDFLKRKEEELKQTPACGVAVSYFQLGDLYLFDEFQTNVYEGLNKA 249

Query: 265 PNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSY---------------- 308
            N RRPKI+N+YDV  N+R+DE EH KTM  CQ  GNL   +S                 
Sbjct: 250 TNIRRPKIKNMYDVIENVRNDELEHVKTMSFCQKPGNLLRANSSVRVQKKAQEVCDGIEN 309

Query: 309 ------SEDDFGCED---ESGCIVAQAD-------CEGIVDCIKKA 338
                  E++    D   E   I+A          CEG++DC+ K 
Sbjct: 310 DENTKNGENNVDVNDDAQECDLIIASGQDLEGERSCEGVLDCVVKG 355


>gi|145351913|ref|XP_001420304.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580538|gb|ABO98597.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 245

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/214 (64%), Positives = 164/214 (76%), Gaps = 2/214 (0%)

Query: 95  EQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADY 154
           E+ VN  L    + V+D LY  R YARF  LET+ARVPYF+F+SVLH+YE+FGWWR+ADY
Sbjct: 2   ERRVNEALIGVAVTVIDNLYGGRSYARFHALETVARVPYFSFMSVLHLYETFGWWRKADY 61

Query: 155 LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSE 214
           LKVHFAE+ NE HHLLIME LGG   W DRF+AQHIAVAYY++ V  Y++SPR AY+  E
Sbjct: 62  LKVHFAETMNEYHHLLIMESLGGAELWKDRFVAQHIAVAYYWICVAQYLVSPRWAYNLLE 121

Query: 215 CVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIEN 274
            VESHA+ TYD F+ A  E LK  P P+VA++YYT GDLYLFDEFQT      RRPKI+N
Sbjct: 122 QVESHAYATYDGFLNANEEVLKATPPPSVAVQYYTKGDLYLFDEFQTVD-RGERRPKIDN 180

Query: 275 LYDVFLNIRDDEAEHCKTMKACQTHGN-LRSPHS 307
           LYDVF+N+R+DEAEH KTM+ CQ  GN LRSP S
Sbjct: 181 LYDVFVNVRNDEAEHMKTMEFCQRPGNGLRSPSS 214


>gi|37520170|ref|NP_923547.1| oxidase [Gloeobacter violaceus PCC 7421]
 gi|35211163|dbj|BAC88542.1| oxidase [Gloeobacter violaceus PCC 7421]
          Length = 238

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 127/210 (60%), Positives = 161/210 (76%), Gaps = 3/210 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
            L   ++ V+D LY++R Y RF+VLET+ARVPYF+++SVLH+YE+ G WR++D+LKVHFA
Sbjct: 4   FLVSILVFVIDVLYKNRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKSDWLKVHFA 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           E+WNE+HHLLIME LGGN  W+DR LA+  A+ YY+V V +Y+ISPR AY F   VE HA
Sbjct: 64  ETWNELHHLLIMESLGGNDRWYDRLLAKSSALVYYWVIVVLYMISPRSAYEFMRQVEEHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           F TYD+F+K+ GE+LK  PAP VA+ YY  GDLY+FDEFQT+R P  RRP  + LYDVF+
Sbjct: 124 FHTYDEFLKSDGERLKLQPAPVVAVSYYLTGDLYMFDEFQTSRRPEERRPACDTLYDVFV 183

Query: 281 NIRDDEAEHCKTMKACQTHG---NLRSPHS 307
           NIRDDEAEH KTM AC+        +SPHS
Sbjct: 184 NIRDDEAEHVKTMAACKAENAQLTFKSPHS 213


>gi|359459267|ref|ZP_09247830.1| alternative oxidase [Acaryochloris sp. CCMEE 5410]
          Length = 219

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 158/198 (79%), Gaps = 4/198 (2%)

Query: 113 LYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIM 172
           +YRDR   RF+VLET+AR+PYF+++SVLH YE+ G+WRRAD+LKVHFAESWNE+HHLLIM
Sbjct: 16  VYRDRPIPRFYVLETVARIPYFSYLSVLHFYETLGFWRRADWLKVHFAESWNELHHLLIM 75

Query: 173 EELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQG 232
           E LGG+  W DRFLA+H+A+ YY++ V +YV+SPR AYHF E VE  AF+TY+ F+    
Sbjct: 76  EALGGDKKWIDRFLARHVALLYYWIVVALYVVSPRSAYHFMELVEQEAFQTYNSFLHDHA 135

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292
           E+LK  PAP +A+ YY  GDLY+FDEFQ+AR+P  RRP ++NLYDVF+NIRDDE EH KT
Sbjct: 136 EELKSQPAPQIAVSYYRDGDLYMFDEFQSARVPEERRPAVDNLYDVFVNIRDDEMEHVKT 195

Query: 293 MKACQT---HGNLRSPHS 307
           M ACQ+     NL SPHS
Sbjct: 196 MVACQSLEAQANL-SPHS 212


>gi|158334717|ref|YP_001515889.1| alternative oxidase [Acaryochloris marina MBIC11017]
 gi|158304958|gb|ABW26575.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
          Length = 219

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 158/198 (79%), Gaps = 4/198 (2%)

Query: 113 LYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIM 172
           +YRDR   RF+VLET+AR+PYF+++SVLH YE+ G+WRRAD+LKVHFAESWNE+HHLLIM
Sbjct: 16  VYRDRPIPRFYVLETVARIPYFSYLSVLHFYETLGFWRRADWLKVHFAESWNELHHLLIM 75

Query: 173 EELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQG 232
           E LGG+  W DRFLA+H+A+ YY++ V +YV+SPR AYHF E VE  AF+TY+ F+    
Sbjct: 76  EALGGDKKWIDRFLARHVALLYYWIVVALYVVSPRSAYHFMELVEQEAFQTYNSFLHDHA 135

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292
           E+LK  PAP +A+ YY  GDLY+FDEFQ+AR+P  RRP ++NLYDVF+NIRDDE EH KT
Sbjct: 136 EELKGQPAPQIAVSYYRDGDLYMFDEFQSARVPEERRPAVDNLYDVFVNIRDDEMEHVKT 195

Query: 293 MKACQT---HGNLRSPHS 307
           M ACQ+     NL SPHS
Sbjct: 196 MVACQSLEAQANL-SPHS 212


>gi|75907278|ref|YP_321574.1| oxidase [Anabaena variabilis ATCC 29413]
 gi|75701003|gb|ABA20679.1| plastoquinol oxidase immutans [Anabaena variabilis ATCC 29413]
          Length = 228

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/210 (60%), Positives = 161/210 (76%), Gaps = 3/210 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
           LL   ++ V++ +YRDR Y RF+VLET+ARVPYF+++SVLH+YE+ GWWR+AD+LKVHFA
Sbjct: 4   LLVGILVFVINTVYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKADWLKVHFA 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE+HHLLIME LGG  +W DRFLA+  A+ YY++ + +Y +SPR AY+F E VE HA
Sbjct: 64  ESWNELHHLLIMESLGGAGFWGDRFLAKTAALIYYWIIIAVYFVSPRSAYNFMELVEQHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           + +YDKF+     +LK  PAP VA  YY  GDLY+FDEFQTA  P+ RRP I+NLYDVF+
Sbjct: 124 YSSYDKFLTTHEAELKTQPAPEVAKIYYRDGDLYMFDEFQTAHSPSERRPNIDNLYDVFV 183

Query: 281 NIRDDEAEHCKTMKACQ---THGNLRSPHS 307
            IRDDE EH KTM ACQ      +L+SPH+
Sbjct: 184 AIRDDEMEHVKTMVACQQTNAQYSLKSPHN 213


>gi|427728396|ref|YP_007074633.1| Alternative oxidase [Nostoc sp. PCC 7524]
 gi|427364315|gb|AFY47036.1| Alternative oxidase [Nostoc sp. PCC 7524]
          Length = 228

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 127/214 (59%), Positives = 163/214 (76%), Gaps = 3/214 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
           LL   ++ V++ +YRDR Y RF+VLET+ARVPYF+++SVLH+YE+ G WR+AD+LKVHFA
Sbjct: 4   LLVGILVFVINTIYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKVHFA 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE+HHLLIME LGG  +W DRFLA+  A+ YY++   +Y+I+P  AY+F E VE+HA
Sbjct: 64  ESWNELHHLLIMENLGGAGFWGDRFLAKTTALIYYWIITALYIINPGAAYNFMELVENHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           + +YDKF+ +   +LK  PAP VA  YY  GDLY+FDEFQTA  P  RRP+IENLYDVF+
Sbjct: 124 YNSYDKFLTSHEAELKAQPAPEVATLYYRDGDLYMFDEFQTAHNPTERRPQIENLYDVFV 183

Query: 281 NIRDDEAEHCKTMKACQ---THGNLRSPHSYSED 311
            IRDDE EH KTM ACQ      +LRSPH+  E+
Sbjct: 184 AIRDDEMEHVKTMVACQQPHAQLSLRSPHTLPEE 217


>gi|17229588|ref|NP_486136.1| plastoquinol terminal oxidase [Nostoc sp. PCC 7120]
 gi|17131187|dbj|BAB73795.1| oxidase [Nostoc sp. PCC 7120]
          Length = 230

 Score =  276 bits (706), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 125/210 (59%), Positives = 160/210 (76%), Gaps = 3/210 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
           LL   ++ V++ +YRDR Y RF+VLET+ARVPYF+++SVLH+YE+ GWWR+AD+LKVHFA
Sbjct: 4   LLVGILVFVINTVYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKADWLKVHFA 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE+HHLLIME LGG  +W DRFLA+  A+ YY++ + +Y +SP  AY+F E VE HA
Sbjct: 64  ESWNELHHLLIMESLGGAGFWGDRFLAKTAALIYYWIIIAVYFVSPHSAYNFMEQVEQHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           + +YDKF+     +LK  PAP VA  YY  GDLY+FDEFQTA  P+ RRP I+NLYDVF+
Sbjct: 124 YSSYDKFLTTHEAELKTQPAPEVAKTYYRDGDLYMFDEFQTAHSPSERRPNIDNLYDVFV 183

Query: 281 NIRDDEAEHCKTMKACQTHG---NLRSPHS 307
            IRDDE EH KTM ACQ      +L+SPH+
Sbjct: 184 AIRDDEMEHVKTMVACQQTNAKYSLKSPHN 213


>gi|158339790|ref|YP_001520797.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
 gi|158310031|gb|ABW31647.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
          Length = 226

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 123/210 (58%), Positives = 161/210 (76%), Gaps = 3/210 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
           +L   ++ V++ +Y +R Y RF+VLET+ARVPYF+++SVLH+YE+ G WR+AD+LK+HFA
Sbjct: 4   ILVGILVFVINKIYANRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKIHFA 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE+HHLLIME LGG  +W DRFLA+  A+ YY+V   +YV+SPR AYHF E VE HA
Sbjct: 64  ESWNELHHLLIMESLGGAEFWGDRFLAKTTALIYYWVIAVLYVVSPRSAYHFMELVEEHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           + +YDKF++ + E LK +PAP VAI+YY  GDLY+FDEFQTA     RRP+++ LYDVF+
Sbjct: 124 YASYDKFLQTEAEHLKTLPAPDVAIQYYRDGDLYMFDEFQTAHQAAERRPQVDTLYDVFV 183

Query: 281 NIRDDEAEHCKTMKACQ---THGNLRSPHS 307
            IRDDE EH KTM ACQ      +L SPH+
Sbjct: 184 AIRDDEMEHVKTMVACQQPEAQQSLLSPHT 213


>gi|303284211|ref|XP_003061396.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456726|gb|EEH54026.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 222

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/222 (56%), Positives = 168/222 (75%), Gaps = 7/222 (3%)

Query: 91  VIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWR 150
           V + E+ VN L+  + ++++D LY  RDY+RF+ LET+ARVPYF+F+SVLH+YE+ G+WR
Sbjct: 1   VPRLERFVNSLVINAAVLIIDKLYEGRDYSRFYALETVARVPYFSFLSVLHLYETLGFWR 60

Query: 151 RADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAY 210
           RADYLKVHFA++ NE HHLLIME LGG+  + DRF AQH+AV YY +   MY++SPRMAY
Sbjct: 61  RADYLKVHFAQTMNEFHHLLIMESLGGDDKFRDRFFAQHMAVGYYGIACLMYLVSPRMAY 120

Query: 211 HFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQT------ARL 264
           + SE VE HA+ TYD F++   E+LK+   P +A+ YY  GDL+LFDEFQT      AR 
Sbjct: 121 NLSEQVEEHAYHTYDVFLRENEERLKRQSPPPIAVHYYQEGDLFLFDEFQTGAVTGVARG 180

Query: 265 PNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGN-LRSP 305
            + RRP+I++LYDVF+N+R+DEAEH KTM+ CQ  G  LR+P
Sbjct: 181 ADKRRPRIDSLYDVFVNVRNDEAEHMKTMQFCQLPGTILRAP 222


>gi|428315519|ref|YP_007113401.1| plastoquinol oxidase immutans [Oscillatoria nigro-viridis PCC 7112]
 gi|428239199|gb|AFZ04985.1| plastoquinol oxidase immutans [Oscillatoria nigro-viridis PCC 7112]
          Length = 237

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 121/210 (57%), Positives = 163/210 (77%), Gaps = 3/210 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
           LL   ++  ++ +Y DR Y RF+VLET+ARVPYF+++SVLH+YE+ GWWR+AD+LK+HF+
Sbjct: 4   LLVGILVFAINVVYADRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKADWLKIHFS 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE+HHLLIME LGG+A+W DR LA+  A+ YY++ + +Y++S + AY+F E VE HA
Sbjct: 64  ESWNELHHLLIMESLGGSAFWGDRLLARATALIYYWIIILVYMVSSKSAYNFMELVEGHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           + +YDKF+ A+ E LK+ PAP VA++YY  GDLY+FDEFQT+     RRPKI+NLYDVF+
Sbjct: 124 YASYDKFLNAEAEALKQQPAPDVALQYYRDGDLYMFDEFQTSSANVFRRPKIDNLYDVFV 183

Query: 281 NIRDDEAEHCKTMKACQ---THGNLRSPHS 307
            IRDDE EH KTM ACQ      +L SPH+
Sbjct: 184 AIRDDEMEHVKTMVACQQPTAQISLLSPHA 213


>gi|440684015|ref|YP_007158810.1| plastoquinol oxidase immutans [Anabaena cylindrica PCC 7122]
 gi|428681134|gb|AFZ59900.1| plastoquinol oxidase immutans [Anabaena cylindrica PCC 7122]
          Length = 228

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/217 (56%), Positives = 163/217 (75%), Gaps = 3/217 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
           LL   ++ V++ +YRDR Y RF+VLET+ARVPYF+++SVLH+YE+ G+WR+AD+LKVHFA
Sbjct: 4   LLVGILVFVINTVYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGFWRKADWLKVHFA 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE+HHLLIME LGG+ +W DR LA+  A+ YY++ V +Y++S   AY+F E VE+HA
Sbjct: 64  ESWNELHHLLIMESLGGSQFWGDRILARTTALIYYWIIVALYIVSSSSAYNFMELVENHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           +++Y KF+     +LK  PAPAVAI YY  GDLY+FDEFQTA  P +RRPK++NLYDVF+
Sbjct: 124 YDSYQKFLTEHEAELKLQPAPAVAINYYRDGDLYMFDEFQTANSPETRRPKVDNLYDVFV 183

Query: 281 NIRDDEAEHCKTMKACQTHG---NLRSPHSYSEDDFG 314
            IRDDE EH KTM  CQ      + +SPH+    D  
Sbjct: 184 AIRDDEMEHVKTMVVCQQANAQLSFKSPHALPTSDIN 220


>gi|359464162|ref|ZP_09252725.1| alternative oxidase, putative [Acaryochloris sp. CCMEE 5410]
          Length = 226

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/210 (58%), Positives = 160/210 (76%), Gaps = 3/210 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
           +L   ++ V++ +Y +R Y RF+VLET+ARVPYF+++SVLH+YE+ G WR+AD+LK+HFA
Sbjct: 4   VLVGILVFVINKIYANRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKIHFA 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE+HHLLIME LGG  +W DR LA+  A+ YY+V   +YV+SPR AYHF E VE HA
Sbjct: 64  ESWNELHHLLIMESLGGAEFWGDRLLAKTTALIYYWVIAALYVVSPRSAYHFMELVEEHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           + +YDKF++A+ E LK +PAP +AI+YY  GDLY+FDEFQTA     RRP+++ LYDVF+
Sbjct: 124 YASYDKFLQAEAEHLKTLPAPDIAIQYYRDGDLYMFDEFQTAHQAAERRPQVDTLYDVFV 183

Query: 281 NIRDDEAEHCKTMKACQ---THGNLRSPHS 307
            IRDDE EH KTM ACQ       L SPH+
Sbjct: 184 AIRDDEMEHVKTMVACQQPEAQQALLSPHT 213


>gi|255086799|ref|XP_002509366.1| predicted protein [Micromonas sp. RCC299]
 gi|226524644|gb|ACO70624.1| predicted protein [Micromonas sp. RCC299]
          Length = 214

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/212 (59%), Positives = 162/212 (76%), Gaps = 3/212 (1%)

Query: 95  EQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADY 154
           E+++N  +  S ++V+D LY  R YARF+ LET+ARVPYF+F+SVLH+YE+ G+WRRADY
Sbjct: 5   ERAINSAIIWSAVLVIDKLYEGRSYARFYALETVARVPYFSFLSVLHLYETLGFWRRADY 64

Query: 155 LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSE 214
           LKVHFA++ NE HHLLIME +GG+  + DRF AQH+AV YYF+   MY++SPRMAY+ SE
Sbjct: 65  LKVHFAQTMNEFHHLLIMESMGGDKRFTDRFFAQHMAVFYYFIACAMYLVSPRMAYNLSE 124

Query: 215 CVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIEN 274
            VE HA+ TYD+F+K    +LK  P P +A  YYT GDL+LFDEFQT      RRP I+N
Sbjct: 125 QVEEHAYHTYDEFLKENELELKSKPPPPIATHYYTEGDLFLFDEFQTG--AARRRPSIDN 182

Query: 275 LYDVFLNIRDDEAEHCKTMKACQTHGN-LRSP 305
           LYDVF+N+R+DEAEH KTM+ CQ  G  LRSP
Sbjct: 183 LYDVFVNVRNDEAEHMKTMQFCQLPGAILRSP 214


>gi|397614777|gb|EJK63007.1| hypothetical protein THAOC_16363 [Thalassiosira oceanica]
          Length = 261

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 134/253 (52%), Positives = 173/253 (68%), Gaps = 18/253 (7%)

Query: 56  DEEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYR 115
           D+ ++ +  +S+P   F +    P + +   L K  I F +S           V D+ + 
Sbjct: 16  DDPDRQLGSDSNPSTKFGS----PISDALKELNKSSIDFLKST----------VFDSFFE 61

Query: 116 --DRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME 173
             DR YARF+ LETIARVPYF+++SVLH+YE+ G WRRA YLK+HFAESWNE+HHLLIME
Sbjct: 62  GEDRAYARFYALETIARVPYFSYLSVLHLYETLGKWRRAKYLKLHFAESWNELHHLLIME 121

Query: 174 ELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE 233
           ELGG+  + DRFLAQHIA  YY V + +YV++P  AY+ ++ VE HAFETYDK++K   E
Sbjct: 122 ELGGSERFLDRFLAQHIAFGYYAVVILLYVLNPVQAYNLNQDVEEHAFETYDKYLKDNEE 181

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
           KLK +PAP  AI YY  GD+Y+FDEFQT      RRPKIENLYDVF+ IRDDEA H +TM
Sbjct: 182 KLKNLPAPKAAIDYYVDGDMYMFDEFQTG--CEFRRPKIENLYDVFVAIRDDEAAHVQTM 239

Query: 294 KACQTHGNLRSPH 306
           +  QT  ++ S H
Sbjct: 240 EQLQTELDVASIH 252


>gi|158333679|ref|YP_001514851.1| alternative oxidase [Acaryochloris marina MBIC11017]
 gi|158303920|gb|ABW25537.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
          Length = 221

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 119/198 (60%), Positives = 153/198 (77%), Gaps = 3/198 (1%)

Query: 113 LYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIM 172
           +Y +R Y RF+VLET+ARVPYF+++SVLH+YE+ G WR+AD+LK+HFAESWNE+HHLLIM
Sbjct: 11  IYANRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKIHFAESWNELHHLLIM 70

Query: 173 EELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQG 232
           E LGG  +W DR LA+  A+ YY+V   +YV+SPR AYHF E VE HA+ +YDKF++++ 
Sbjct: 71  ESLGGAEFWGDRLLAKTTALIYYWVIAALYVVSPRSAYHFMELVEEHAYASYDKFLQSEA 130

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292
           E LK +PAP VAI+YY  GDLY+FDEFQTA     RRP+++ LYDVF+ IRDDE EH KT
Sbjct: 131 EHLKTLPAPDVAIQYYQDGDLYMFDEFQTAHQAAERRPQVDTLYDVFVAIRDDEMEHVKT 190

Query: 293 MKACQ---THGNLRSPHS 307
           + ACQ       L SPH+
Sbjct: 191 ILACQQPEAQQALLSPHT 208


>gi|428319159|ref|YP_007117041.1| alternative oxidase [Oscillatoria nigro-viridis PCC 7112]
 gi|428242839|gb|AFZ08625.1| alternative oxidase [Oscillatoria nigro-viridis PCC 7112]
          Length = 229

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 120/223 (53%), Positives = 160/223 (71%), Gaps = 3/223 (1%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
           L+    + ++D +Y +R Y RF++LETIARVPYF+++SVLH+YE+ G+WR+AD LK+HFA
Sbjct: 7   LIVAFFVFLVDVVYGNRSYPRFYMLETIARVPYFSYLSVLHLYETLGYWRKADLLKLHFA 66

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           E+WNE+HHLLIME LGG+  W DRF+AQH+A AYY+V V +Y++ P  AY+  E +E HA
Sbjct: 67  ETWNELHHLLIMESLGGDRLWIDRFIAQHVAFAYYWVVVPLYMLFPSYAYYLMELIEGHA 126

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           + TYD+++K    +LK  PAP VAI +Y  GDLY+FDE QTA     RRPK++NLYDVF 
Sbjct: 127 YHTYDEYLKTYEAQLKAQPAPQVAINFYRDGDLYMFDEVQTALSHEFRRPKVDNLYDVFA 186

Query: 281 NIRDDEAEHCKTMKACQ---THGNLRSPHSYSEDDFGCEDESG 320
           NIRDDE EH KTM A Q        +SPH+  E      D++G
Sbjct: 187 NIRDDEDEHVKTMVALQKPEARLTFKSPHTVFEAIAANADKTG 229


>gi|224009886|ref|XP_002293901.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970573|gb|EED88910.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 292

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/189 (61%), Positives = 143/189 (75%), Gaps = 2/189 (1%)

Query: 116 DRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175
           DR YARF+ LETIARVPYF+++SVLH+YE+ G WRR  YLK+HFAESWNEMHHLLIMEEL
Sbjct: 94  DRAYARFYALETIARVPYFSYLSVLHLYETLGKWRRVKYLKLHFAESWNEMHHLLIMEEL 153

Query: 176 GGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL 235
           GG+  +FDRFLAQH A  Y+ + + +Y+I+P  AY+ ++ VE HAF TYD F+K   E L
Sbjct: 154 GGSERFFDRFLAQHCAFGYFLIVITLYLINPVQAYNLNQDVEEHAFATYDTFLKENAEML 213

Query: 236 KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKA 295
           K  PAP VAI+YY  GD+Y+FDEFQT      RRP+I NLYDVF+ IRDDE  H KTM+ 
Sbjct: 214 KTKPAPKVAIEYYRHGDMYMFDEFQTE--CELRRPEINNLYDVFVAIRDDEMAHVKTMEK 271

Query: 296 CQTHGNLRS 304
            QT  ++ S
Sbjct: 272 LQTELDVSS 280


>gi|404325818|gb|AFR58666.1| plastid terminal oxidase [Dunaliella salina]
          Length = 451

 Score =  250 bits (639), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 114/198 (57%), Positives = 149/198 (75%), Gaps = 1/198 (0%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL-KVHF 159
           LL ++V ++LD +Y +R   RF+ LET+AR+PYF++IS +H+YE+ GWWR A  L K+HF
Sbjct: 236 LLYDAVCLMLDLVYNNRPIQRFWFLETVARMPYFSYISCIHLYETLGWWRAAAELRKIHF 295

Query: 160 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESH 219
           AE WNE+HHL IME LGG+  WFDRFLA H A+AYY+V V +Y+ SP++AY+FSE +E+H
Sbjct: 296 AEEWNELHHLQIMEALGGDRLWFDRFLAYHSAIAYYWVLVGLYICSPKLAYNFSELLEAH 355

Query: 220 AFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVF 279
           A +TY +F+ +  E LK +  P VA +YY   DLY+FDEFQT      R PK +NLYDVF
Sbjct: 356 AVDTYGEFVSSNEELLKSLEPPLVAAQYYRSPDLYMFDEFQTDISSGKRNPKCDNLYDVF 415

Query: 280 LNIRDDEAEHCKTMKACQ 297
           +NIRDDEAEH KTM ACQ
Sbjct: 416 VNIRDDEAEHVKTMNACQ 433


>gi|302837648|ref|XP_002950383.1| hypothetical protein VOLCADRAFT_90709 [Volvox carteri f.
           nagariensis]
 gi|300264388|gb|EFJ48584.1| hypothetical protein VOLCADRAFT_90709 [Volvox carteri f.
           nagariensis]
          Length = 468

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 147/195 (75%), Gaps = 2/195 (1%)

Query: 105 SVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR-ADYLKVHFAESW 163
           S+ ++LD L+ +R   RF+ LET+AR+PYF++ISVLH+YESFGWWR  A+  K+HFAE W
Sbjct: 254 SLCVLLDVLFNNRPIQRFWFLETVARMPYFSYISVLHLYESFGWWRAGAELRKIHFAEEW 313

Query: 164 NEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFET 223
           NE+HHL IME LGG+  WFDRF A H AV YY++ + +YV SP +AY+FSE +E+HA +T
Sbjct: 314 NELHHLQIMESLGGDKLWFDRFCALHAAVVYYWILLALYVFSPELAYNFSELIEAHAVDT 373

Query: 224 YDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTAR-LPNSRRPKIENLYDVFLNI 282
           Y +F+ A  E LK +P P VA  YY   DLY+FD FQT++ L N RRP  +NL+DVF NI
Sbjct: 374 YGEFVDANEELLKSLPPPLVAAMYYRSQDLYMFDSFQTSQPLKNPRRPPCKNLHDVFCNI 433

Query: 283 RDDEAEHCKTMKACQ 297
           RDDE EH KTM+ACQ
Sbjct: 434 RDDELEHVKTMRACQ 448


>gi|32307546|gb|AAP79178.1| quinol-to-oxygen oxidoreductase [Bigelowiella natans]
          Length = 291

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/201 (56%), Positives = 150/201 (74%), Gaps = 2/201 (0%)

Query: 106 VIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLK-VHFAESWN 164
           + ++LD+L+  R   RF+ LET+AR+PY +++++LH+YESFGWWRRA  +K VHFAE WN
Sbjct: 61  LCLMLDSLFDGRPLERFWFLETVARMPYLSYVTMLHLYESFGWWRRAAAVKRVHFAEEWN 120

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E HHLL  E LGG+  W  RFLAQH A+ YY+V V M+++SP +AY+FSE +E+HA +TY
Sbjct: 121 EFHHLLTFEALGGDRSWATRFLAQHAAIVYYWVLVLMWLLSPTLAYNFSELIEAHAVDTY 180

Query: 225 DKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTA-RLPNSRRPKIENLYDVFLNIR 283
            +F  A  E +K++PAP +AI+Y+ GGD+YL+DEFQT  RL + RRP I NLYDV   IR
Sbjct: 181 GEFADANEELMKELPAPGIAIQYWMGGDMYLYDEFQTERRLGDERRPNITNLYDVICAIR 240

Query: 284 DDEAEHCKTMKACQTHGNLRS 304
           DDEAEH  TM ACQ  G + S
Sbjct: 241 DDEAEHVATMAACQKKGTIVS 261


>gi|404325822|gb|AFR58668.1| plastid terminal oxidase [Dunaliella bardawil]
          Length = 451

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 113/198 (57%), Positives = 148/198 (74%), Gaps = 1/198 (0%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL-KVHF 159
           LL ++V ++LD +Y +R   RF+ LET+AR+PYF++IS +H+YE+ GWWR A  L K+HF
Sbjct: 236 LLYDAVCLMLDVVYNNRPLQRFWFLETVARMPYFSYISCIHLYETLGWWRAAAELRKIHF 295

Query: 160 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESH 219
           AE WNE+HHL IME LGG+  WFDRFLA H A+AYY+V V +Y+ SPR++Y+FSE +E+H
Sbjct: 296 AEEWNELHHLQIMEALGGDCMWFDRFLAYHSAIAYYWVLVALYIFSPRLSYNFSELLEAH 355

Query: 220 AFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVF 279
           A +TY +F+ +    LK +  P VA +YY   DLY+FDEFQT      R PK +NLYDVF
Sbjct: 356 AVDTYSEFVSSNEVLLKSLEPPLVAAQYYRSPDLYMFDEFQTDIKSEKRTPKCDNLYDVF 415

Query: 280 LNIRDDEAEHCKTMKACQ 297
           +NIRDDEAEH KTM ACQ
Sbjct: 416 VNIRDDEAEHVKTMNACQ 433


>gi|428168785|gb|EKX37726.1| centrin/plastid terminal oxidase fusion protein [Guillardia theta
           CCMP2712]
          Length = 1019

 Score =  246 bits (629), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 116/237 (48%), Positives = 163/237 (68%), Gaps = 10/237 (4%)

Query: 93  KFEQSVNILLTESVIMV--------LDALYRDRDYARFFVLETIARVPYFAFISVLHMYE 144
           +F QS+ +  T ++IMV        +D L+ +R   RF+ LET+AR+PYF++I++L +YE
Sbjct: 743 EFVQSLQLTATPALIMVPYTFLCWLIDVLFVNRPIQRFWFLETVARMPYFSYITMLTLYE 802

Query: 145 SFGWWRRA-DYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYV 203
           S GWWR + D  +VHFAE WNE+ HL IME LGG+  WFDRF+ +H A+ Y+ +   +++
Sbjct: 803 SLGWWRSSMDSRRVHFAEEWNEVQHLKIMEALGGDRSWFDRFMGRHAAIFYFIILNHIWL 862

Query: 204 ISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTAR 263
           +SP +AY+FSE +E HA +TY +F+ A  E LK +P P  A++YY   DLYLFDEFQT R
Sbjct: 863 LSPSLAYNFSELIEFHAVDTYGEFVDANEELLKSLPPPQEAVEYYNSKDLYLFDEFQTGR 922

Query: 264 LPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTH-GNLRSPHSYSEDDFGCEDES 319
            P SRRP I +LYDVF NIRDDE EH KTM  CQT    ++SP++ + +    ++ES
Sbjct: 923 TPKSRRPVIRSLYDVFCNIRDDELEHVKTMFQCQTSLQQIQSPNAQAAEMERKQEES 979


>gi|168049162|ref|XP_001777033.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671598|gb|EDQ58147.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 212

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/206 (55%), Positives = 149/206 (72%), Gaps = 2/206 (0%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWR-RADYLKVHFAESWNEMH 167
           +LD ++ DR   RF+ LET+AR+PYF++IS+LH+YE+ GWWR  A+  KVHFAE WNEMH
Sbjct: 1   MLDVIFNDRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRIGAEVRKVHFAEEWNEMH 60

Query: 168 HLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
           HL IME LGG+  W DRF AQH A  YY+V   M++ISP++AY+FSE +E HA +TY +F
Sbjct: 61  HLRIMESLGGDLEWGDRFFAQHAAFFYYWVLNLMFLISPKVAYNFSELIEMHAVDTYGEF 120

Query: 228 IKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
             A  E LK +P P  A++YY   DLY++DEFQT++ P +RRPKI NLYDVF  I  DE 
Sbjct: 121 ADANEELLKTLPPPPAALEYYESEDLYMYDEFQTSQAPETRRPKINNLYDVFKAISGDEL 180

Query: 288 EHCKTMKACQT-HGNLRSPHSYSEDD 312
           EH KTM ACQT    ++SPH+  + D
Sbjct: 181 EHVKTMSACQTLDMPIKSPHNRRQQD 206


>gi|384251652|gb|EIE25129.1| hypothetical protein COCSUDRAFT_46597 [Coccomyxa subellipsoidea
           C-169]
          Length = 487

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/203 (54%), Positives = 145/203 (71%), Gaps = 2/203 (0%)

Query: 98  VNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWR-RADYLK 156
           +N+  T ++ +V+D LY  R   RF+ LE +AR+PYF++IS+LH+YES GWWR  A+  +
Sbjct: 235 INVAYT-TLCVVMDVLYNKRPIQRFWFLEVVARMPYFSYISMLHLYESLGWWRAGAELRR 293

Query: 157 VHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECV 216
           +HFAE WNE+HHL IME LGG+ +W DRF AQH AV YY+V V  +  SP++AY FSE V
Sbjct: 294 IHFAEEWNELHHLQIMESLGGDQFWIDRFAAQHAAVFYYWVIVGFFAFSPQLAYVFSELV 353

Query: 217 ESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLY 276
           E HA +TY++F++   E LK +P P VA++YY  GDLYLFDE QT      RRP   NLY
Sbjct: 354 EGHAVDTYEEFVEENAELLKTLPPPVVALEYYKNGDLYLFDELQTTGTDPKRRPSCNNLY 413

Query: 277 DVFLNIRDDEAEHCKTMKACQTH 299
           DVF NI  DE EH KTM+AC+T+
Sbjct: 414 DVFCNIAGDEREHVKTMRACRTY 436


>gi|302782501|ref|XP_002973024.1| hypothetical protein SELMODRAFT_98486 [Selaginella moellendorffii]
 gi|300159625|gb|EFJ26245.1| hypothetical protein SELMODRAFT_98486 [Selaginella moellendorffii]
          Length = 255

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/204 (53%), Positives = 146/204 (71%), Gaps = 1/204 (0%)

Query: 105 SVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWR-RADYLKVHFAESW 163
           ++  +LD ++  R   RF+ LET+AR+PYF++IS+LH+YE+ GWWR  AD  KVHFAE W
Sbjct: 47  ALCWMLDVIFEGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEW 106

Query: 164 NEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFET 223
           NEMHHL IME LGG+  W DRF  QH A  YY++  FM+ +SP++AY+FSE +E HA +T
Sbjct: 107 NEMHHLKIMESLGGDLLWGDRFFGQHAAFFYYWILNFMFFVSPKVAYNFSELIEMHAVDT 166

Query: 224 YDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
           Y +F+    E LK++P    A+ YY   DLY+FDEFQT+R P SRRPK+++LYDVF+ I+
Sbjct: 167 YGQFVDENEELLKQLPPSPEAVAYYENEDLYMFDEFQTSRAPESRRPKVDSLYDVFVAIK 226

Query: 284 DDEAEHCKTMKACQTHGNLRSPHS 307
            DE EH KTM ACQ    + SPH 
Sbjct: 227 GDEFEHVKTMAACQRAETVASPHK 250


>gi|219124647|ref|XP_002182610.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405956|gb|EEC45897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 314

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 136/305 (44%), Positives = 177/305 (58%), Gaps = 20/305 (6%)

Query: 13  SNKAINLKSVASFNTIKTLRFNPPSSPRSL-SRNFCRVQATILQDE---EEKVVVEESSP 68
           S   + L S+A    + T+R   P+   SL S  F R   T           +  E + P
Sbjct: 6   SLSPLALGSIAFVTVLSTVRGFTPTVRLSLASTPFVRSTRTRPPTSLGVSNPLRTERTQP 65

Query: 69  LKNFPNDDEPPETGSASALEKWVIKFEQSV---NILLTESVIMVL-DALYR----DRDYA 120
           + +       PET  +S    +    ++S    N  L   +  VL D +YR    DR +A
Sbjct: 66  VVSANTVSTLPETKPSSPSSVFGRPLDESTKQRNRQLVHQLKSVLFDQVYRGDTMDRAFA 125

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF+ LETIAR+PYF+++SVLH++E+ G WRRA+YL+VHFAESWNE+HHLLIMEELGGN  
Sbjct: 126 RFYALETIARMPYFSYLSVLHLWETLGMWRRAEYLQVHFAESWNELHHLLIMEELGGNGR 185

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPA 240
           W DRF+AQHIA  YY++ V +Y ++P MAY+ ++ VE  A+ETYD F++   E L+  PA
Sbjct: 186 WGDRFVAQHIAFFYYWIVVTLYAVNPTMAYNLNQAVEEEAYETYDGFLQTHAEYLQSQPA 245

Query: 241 PAVAIKYYTGGDLYLFDEFQ-TARLPN-------SRRPKIENLYDVFLNIRDDEAEHCKT 292
           P  AI+YYTG DLYLF       R P         RRP  E LYD   NIRDDE EH KT
Sbjct: 246 PQAAIRYYTGDDLYLFHAMHWDTRQPKEPESPVEQRRPTCETLYDTIRNIRDDELEHVKT 305

Query: 293 MKACQ 297
           M   Q
Sbjct: 306 MACLQ 310


>gi|145354902|ref|XP_001421713.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581951|gb|ABP00007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 240

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 114/205 (55%), Positives = 149/205 (72%), Gaps = 3/205 (1%)

Query: 105 SVIMVLDALYRD-RDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL-KVHFAES 162
           ++ ++LD L+ + +   RF+ LET+AR+PYF++ S+L  YE  GWWRR+  L KVHFAE 
Sbjct: 36  ALCVMLDKLFDETQPVQRFWFLETVARMPYFSYTSMLTFYEILGWWRRSSELRKVHFAEE 95

Query: 163 WNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
           WNE HHLL+ME LGG+A W DRFL QH A+ YYFV V +++ISP +AY+FSE +E HA +
Sbjct: 96  WNEYHHLLVMESLGGDACWRDRFLGQHAAIVYYFVLVALWLISPALAYNFSELIEGHAVD 155

Query: 223 TYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNI 282
           TY +F+    E LK MPAP +A++YY   DLYLFDEFQTAR    RRP+I +L+DVF NI
Sbjct: 156 TYGQFVDQNAELLKSMPAPRIAVEYYEAADLYLFDEFQTAREVRLRRPQIRSLFDVFSNI 215

Query: 283 RDDEAEHCKTMKACQTH-GNLRSPH 306
           RDDE EH  TM ACQ    ++ SP+
Sbjct: 216 RDDEGEHVNTMNACQREDSDISSPN 240


>gi|302805482|ref|XP_002984492.1| hypothetical protein SELMODRAFT_120335 [Selaginella moellendorffii]
 gi|300147880|gb|EFJ14542.1| hypothetical protein SELMODRAFT_120335 [Selaginella moellendorffii]
          Length = 255

 Score =  240 bits (613), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 110/204 (53%), Positives = 145/204 (71%), Gaps = 1/204 (0%)

Query: 105 SVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWR-RADYLKVHFAESW 163
           ++  +LD ++  R   RF+ LET+AR+PYF++IS+LH+YE+ GWWR  AD  KVHFAE W
Sbjct: 47  ALCWMLDVIFEGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEW 106

Query: 164 NEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFET 223
           NEMHHL IME LGG+  W DRF  QH A  YY++  FM+ +SP++AY+FSE +E HA +T
Sbjct: 107 NEMHHLKIMESLGGDLLWGDRFFGQHAAFFYYWILNFMFFVSPKVAYNFSELIEMHAVDT 166

Query: 224 YDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
           Y +F     E LK++P    A+ YY   DLY+FDEFQT+R P SRRPK+++LYDVF+ I+
Sbjct: 167 YGQFFDENEELLKQLPPSPEAVAYYENEDLYMFDEFQTSRAPESRRPKVDSLYDVFVAIK 226

Query: 284 DDEAEHCKTMKACQTHGNLRSPHS 307
            DE EH KTM ACQ    + SPH 
Sbjct: 227 GDEFEHVKTMAACQRAETVASPHK 250


>gi|159468876|ref|XP_001692600.1| alternative oxidase [Chlamydomonas reinhardtii]
 gi|158278313|gb|EDP04078.1| alternative oxidase [Chlamydomonas reinhardtii]
          Length = 471

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 138/186 (74%), Gaps = 2/186 (1%)

Query: 114 YRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR-ADYLKVHFAESWNEMHHLLIM 172
           Y +R   RF+ LET+AR+PYF++IS+LH+YES GWWR  A+  K+HFAE WNE+HHL IM
Sbjct: 266 YENRPIQRFWFLETVARMPYFSYISMLHLYESLGWWRAGAELRKIHFAEEWNELHHLQIM 325

Query: 173 EELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQG 232
           E LGG+  WFDRF AQH A+ YY++ + +YV SPR+AY+FSE +E HA +TY +F+ A  
Sbjct: 326 ESLGGDQLWFDRFAAQHAAILYYWILLGLYVFSPRLAYNFSELIEYHAVDTYGEFVDANE 385

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTAR-LPNSRRPKIENLYDVFLNIRDDEAEHCK 291
           E LK +P P VA  YY   DLY+FD FQT++ + N RRP  + LYDVF NI DDE EH K
Sbjct: 386 ELLKSLPPPLVAAVYYRSQDLYMFDSFQTSQPMQNPRRPSCKTLYDVFKNICDDEMEHVK 445

Query: 292 TMKACQ 297
           TMKACQ
Sbjct: 446 TMKACQ 451


>gi|20149254|gb|AAM12876.1|AF494290_1 quinol-to-oxygen oxidoreductase [Chlamydomonas reinhardtii]
          Length = 471

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 137/186 (73%), Gaps = 2/186 (1%)

Query: 114 YRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR-ADYLKVHFAESWNEMHHLLIM 172
           Y +R   RF+ LET+AR+PYF++IS+LH+YES GWWR  A+  K+HFAE WNE+HHL IM
Sbjct: 266 YENRPIQRFWFLETVARMPYFSYISMLHLYESLGWWRAGAELRKIHFAEEWNELHHLQIM 325

Query: 173 EELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQG 232
           E LGG+  WFDRF AQH A+ YY++ + +YV SPR+AY+FSE +E HA +TY +F  A  
Sbjct: 326 ESLGGDQLWFDRFAAQHAAILYYWILLGLYVFSPRLAYNFSELIEYHAVDTYGEFWDANE 385

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTAR-LPNSRRPKIENLYDVFLNIRDDEAEHCK 291
           E LK +P P VA  YY   DLY+FD FQT++ + N RRP  + LYDVF NI DDE EH K
Sbjct: 386 ELLKSLPPPLVAAVYYRSQDLYMFDSFQTSQPMQNPRRPSCKTLYDVFKNICDDEMEHVK 445

Query: 292 TMKACQ 297
           TMKACQ
Sbjct: 446 TMKACQ 451


>gi|14595199|gb|AAK70807.1| oxidase [Oryza sativa]
          Length = 158

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/157 (68%), Positives = 129/157 (82%), Gaps = 3/157 (1%)

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPA 242
           DRFLA+  A  YYF+TV MY++SPRMAYHFSECVE HA+ TYDKFIK   ++LKK+PAP 
Sbjct: 1   DRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFIKLHEDELKKLPAPE 60

Query: 243 VAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNL 302
            A+ YY   DLYLFDEFQTAR+P SRRPKI+NLYDVF+NIRDDEAEHCKTMKACQTHGNL
Sbjct: 61  AALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEAEHCKTMKACQTHGNL 120

Query: 303 RSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAV 339
           RSPHS  +     E ++ C++ + DCEGIVDC+KK++
Sbjct: 121 RSPHSMQK---CLETDTECVIPEDDCEGIVDCVKKSL 154


>gi|308812468|ref|XP_003083541.1| quinol-to-oxygen oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116055422|emb|CAL58090.1| quinol-to-oxygen oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 505

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 145/206 (70%), Gaps = 3/206 (1%)

Query: 105 SVIMVLDALYRD-RDYARFFVLETIARVPYFAFISVLHMYESFGWWRR-ADYLKVHFAES 162
           ++  +LD L+ + +   RF+ LET+AR+PY+++ + L  YE  GW+R  A+  K+HFAE 
Sbjct: 237 ALCFMLDKLFDETKPVQRFWFLETVARMPYYSYTAALTFYEILGWYRGGAELRKIHFAEE 296

Query: 163 WNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
           WNE HHLLIME LGG+  W DRFL QH A+ YY V + ++ +SP +AY+FSE +E+HA +
Sbjct: 297 WNEYHHLLIMESLGGDVSWRDRFLGQHAALVYYGVLILLWFMSPALAYNFSELIEAHAVD 356

Query: 223 TYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNI 282
           TY +F+    E LK MPAP +A++YY G DLYLFDEFQTAR   +RRP+I  LYDVF NI
Sbjct: 357 TYAQFVDQNAELLKTMPAPRIAVEYYEGADLYLFDEFQTAREVRTRRPRIRTLYDVFSNI 416

Query: 283 RDDEAEHCKTMKACQTH-GNLRSPHS 307
           RDDE EH  TM ACQ     + SP+S
Sbjct: 417 RDDEGEHVSTMNACQKEDAAVSSPNS 442


>gi|298710389|emb|CBJ25453.1| alternative oxidase, mitochondrial protein [Ectocarpus siliculosus]
          Length = 651

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 111/200 (55%), Positives = 146/200 (73%), Gaps = 2/200 (1%)

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRA-DYLKVHFAESWNEMHH 168
           LD ++ DR   RF+ LET+AR+PYF+++S+L +YE+ GWW  A +  KVHFAE +NEM H
Sbjct: 327 LDVVFEDRPIQRFWFLETVARMPYFSYLSMLFLYETLGWWSGAAEVRKVHFAEEYNEMQH 386

Query: 169 LLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
           L IME LGG+  W DRFLA+H A+ Y+ V +  Y++SP +AY+FSE +ESHA +TY +F 
Sbjct: 387 LRIMESLGGDTRWSDRFLARHAAIIYFSVLILGYLVSPFLAYNFSELIESHAVDTYTEFA 446

Query: 229 KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAE 288
           +A  E LK +P    A+ YY GGD+YLFDEFQT+R   SRRP+I+NLYDVF  IRDDE E
Sbjct: 447 EANEELLKSLPPTPQALDYYHGGDMYLFDEFQTSRPAFSRRPRIQNLYDVFSCIRDDELE 506

Query: 289 HCKTMKACQTH-GNLRSPHS 307
           H KTM AC+   G L SP++
Sbjct: 507 HVKTMFACERGTGALPSPNA 526


>gi|302830420|ref|XP_002946776.1| hypothetical protein VOLCADRAFT_79367 [Volvox carteri f.
           nagariensis]
 gi|300267820|gb|EFJ52002.1| hypothetical protein VOLCADRAFT_79367 [Volvox carteri f.
           nagariensis]
          Length = 437

 Score =  233 bits (595), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 110/192 (57%), Positives = 141/192 (73%), Gaps = 2/192 (1%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR-ADYLKVHFAESWNEMH 167
           +LD +Y ++   +F+VLET+AR+PYFA+IS+LH+YES G+WR  A+  K+HFAE WNEMH
Sbjct: 203 LLDIMYDNKPIEKFWVLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEWNEMH 262

Query: 168 HLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
           HL IME LGG+  W DRF+A+H AV YY+V +  Y++SPRMAY+F + VE HA +TY  F
Sbjct: 263 HLQIMESLGGDRAWMDRFIAEHSAVFYYWVLILFYLVSPRMAYNFMQRVELHAADTYTAF 322

Query: 228 IKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTA-RLPNSRRPKIENLYDVFLNIRDDE 286
           ++     L+ +P P VA++YY   DLYLFDEFQTA R    RRP+ E L DVF NIRDDE
Sbjct: 323 LQRNAAVLESIPPPMVALQYYYSEDLYLFDEFQTASRGAPPRRPRCETLLDVFKNIRDDE 382

Query: 287 AEHCKTMKACQT 298
            EH KTM ACQ 
Sbjct: 383 MEHVKTMIACQN 394


>gi|159491010|ref|XP_001703466.1| plastid terminal oxidase [Chlamydomonas reinhardtii]
 gi|158280390|gb|EDP06148.1| plastid terminal oxidase [Chlamydomonas reinhardtii]
          Length = 416

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/199 (56%), Positives = 144/199 (72%), Gaps = 6/199 (3%)

Query: 105 SVIMVLDALY-RDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR-ADYLKVHFAES 162
           ++  VLD +Y +++   +F+VLET+AR+PYFA+IS+LH+YES G+WR  A+  K+HFAE 
Sbjct: 199 ALCFVLDVMYPKNKAIEKFWVLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEE 258

Query: 163 WNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
           WNEMHHL IME LGG+  WFDRF+A+H AV YY+V +  Y++SPRMAY+F + VE HA +
Sbjct: 259 WNEMHHLQIMESLGGDRAWFDRFIAEHAAVFYYWVLIAFYLVSPRMAYNFMQRVELHAAD 318

Query: 223 TYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTAR--LPN--SRRPKIENLYDV 278
           TY  F++     L  +P P VA++YY   DLYLFDEFQTA    P    RRP  ENL DV
Sbjct: 319 TYSAFVERNRTALADIPPPLVALQYYYSDDLYLFDEFQTASRGAPGVPPRRPPCENLLDV 378

Query: 279 FLNIRDDEAEHCKTMKACQ 297
           F NIRDDE EH KTM ACQ
Sbjct: 379 FTNIRDDELEHVKTMVACQ 397


>gi|157782928|gb|ABV72392.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 447

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/192 (55%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 106 VIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL-KVHFAESWN 164
           + +++D L+ +R   RF+ LET+AR+PYF++IS LH+YES GWWR A  L K+HFAE WN
Sbjct: 238 LCLLIDVLFENRPIQRFWFLETVARMPYFSYISCLHLYESLGWWRAAAELRKIHFAEEWN 297

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E+HHL IME LGG+  WFDRF+  H A+ YY+V V +YV SP +AY FSE +E+HA +TY
Sbjct: 298 ELHHLQIMESLGGDQLWFDRFVGYHSAIVYYWVLVLLYVASPSLAYTFSELLEAHAVDTY 357

Query: 225 DKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
            +F+ A    LK +  P VA +YY   DLYLFDEFQT+ +   R P +ENLYDVF  I++
Sbjct: 358 GEFLDANEPLLKSLAPPLVAAEYYRSCDLYLFDEFQTSNV-TPRNPPLENLYDVFCAIKE 416

Query: 285 DEAEHCKTMKAC 296
           DE EH KTM AC
Sbjct: 417 DEGEHVKTMHAC 428


>gi|108442436|gb|ABF85789.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 447

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/192 (55%), Positives = 138/192 (71%), Gaps = 2/192 (1%)

Query: 106 VIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL-KVHFAESWN 164
           + +++D L+ +R   RF+ LET+AR+PYF++IS LH+YES GWWR A  L K+HFAE WN
Sbjct: 238 LCLLIDVLFENRPIQRFWFLETVARMPYFSYISCLHLYESLGWWRAAAELRKLHFAEEWN 297

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E+HHL IME LGG+  WFDRF+  H A+ YY+V V +YV SP +AY FSE +E+HA +TY
Sbjct: 298 ELHHLQIMESLGGDQLWFDRFVGYHSAIVYYWVLVLLYVASPSLAYTFSELLEAHAVDTY 357

Query: 225 DKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
            +F+ A    LK +  P VA +YY   DLYLFDEFQT+ +   R P +ENLYDVF  I++
Sbjct: 358 GEFLDANEPLLKSLAPPLVAAEYYRSCDLYLFDEFQTSNV-TPRNPPLENLYDVFCAIKE 416

Query: 285 DEAEHCKTMKAC 296
           DE EH KTM AC
Sbjct: 417 DEGEHVKTMHAC 428


>gi|307109996|gb|EFN58233.1| hypothetical protein CHLNCDRAFT_12129, partial [Chlorella
           variabilis]
          Length = 216

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/210 (53%), Positives = 141/210 (67%), Gaps = 17/210 (8%)

Query: 105 SVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWR------------RA 152
           S+   LD +Y  R   RF++LET+AR+PYF +IS+LH+YES GWWR            RA
Sbjct: 7   SLCWALDVMYAGRPIERFWILETVARMPYFVYISMLHLYESLGWWRAGAELRKARRSSRA 66

Query: 153 DY---LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMA 209
           +    L VHFAE WNE+HHL IME LGG+  W DRFLA+H AV YY+  V +Y+ISP  +
Sbjct: 67  ELSGSLHVHFAEEWNELHHLQIMEALGGDLRWGDRFLAEHAAVFYYWALVLIYLISPAAS 126

Query: 210 YHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS-- 267
           Y F E VE HA +TY +F +   E+L+ +P P VA+ YY  GDLYLFD+FQT+       
Sbjct: 127 YQFMEMVEGHAADTYAEFAEQNRERLQAIPPPLVALAYYKSGDLYLFDQFQTSWKAAGEL 186

Query: 268 RRPKIENLYDVFLNIRDDEAEHCKTMKACQ 297
           RRP+  NLYDVF+NIRDDE EH KTM ACQ
Sbjct: 187 RRPRCNNLYDVFINIRDDELEHVKTMAACQ 216


>gi|378706340|gb|AFC35141.1| hypothetical protein OtV6_233 [Ostreococcus tauri virus RT-2011]
          Length = 201

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/210 (50%), Positives = 144/210 (68%), Gaps = 21/210 (10%)

Query: 89  KWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGW 148
           K ++K E+ +N  + +S + V+D +Y+DRDYARF+VLET+ARVPYF+F+SVLH+YE+ G 
Sbjct: 8   KPLVKLEKRINKAVVKSAVKVIDKVYKDRDYARFYVLETVARVPYFSFVSVLHLYETLGL 67

Query: 149 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
           WR+ADYL+ HF ++ NE HHLLIME+LGG+  + DRF AQH A AYY++T  +Y+ SPRM
Sbjct: 68  WRKADYLETHFEQTMNEYHHLLIMEQLGGDERFIDRFFAQHTAFAYYWLTCLIYLASPRM 127

Query: 209 AYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSR 268
           AY+ SE +E HA+ TYD+F+K  GE L     P VA  YY  GD                
Sbjct: 128 AYNLSEQIEEHAYHTYDEFLKKHGENLLLERPPIVAANYY--GD---------------- 169

Query: 269 RPKIENLYDVFLNIRDDEAEHCKTMKACQT 298
              + NLYDVF  +RDDE +H KT++ CQ+
Sbjct: 170 ---VNNLYDVFTRVRDDEGDHVKTIQDCQS 196


>gi|412985307|emb|CCO20332.1| predicted protein [Bathycoccus prasinos]
          Length = 394

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/218 (50%), Positives = 141/218 (64%), Gaps = 26/218 (11%)

Query: 109 VLDALY-RDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL-KVHFAESWNEM 166
           VLD  +  ++   RF+ LET+AR+PYF++ ++L +YE  GWWRR+  L KVHFAE WNE 
Sbjct: 110 VLDLWFPENKPVQRFWFLETVARMPYFSYTTMLTLYELLGWWRRSSELRKVHFAEEWNEY 169

Query: 167 HHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDK 226
           HHLLIME LGG+  W DRFLAQH A+ YYF  V ++++SP++AY+FSE +E+HA  TY +
Sbjct: 170 HHLLIMESLGGDRRWSDRFLAQHAALVYYFGLVVVWLLSPKLAYNFSEKIETHAVATYAQ 229

Query: 227 FIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS------------------- 267
           F +   E L+ +PAP VA KYY   DLYLFDEFQT  + N+                   
Sbjct: 230 FTEENKELLESLPAPEVAKKYYEAEDLYLFDEFQTTTMLNTGEIVSLKLNSRSSDEGDPL 289

Query: 268 -----RRPKIENLYDVFLNIRDDEAEHCKTMKACQTHG 300
                RRPKIE LYDVF NI +DE EH  TM ACQ  G
Sbjct: 290 DPLSVRRPKIETLYDVFSNICEDEKEHVGTMNACQIEG 327


>gi|108442448|gb|ABF85790.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 441

 Score =  221 bits (562), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 138/193 (71%), Gaps = 3/193 (1%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR-ADYLKVHFAESWNEMH 167
           VLD +Y  R   +F+VLET+AR+PYFA+IS+LH+YES G+WR  A+  K+HFAE WNE+H
Sbjct: 226 VLDVVYDKRPIQKFWVLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEWNELH 285

Query: 168 HLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
           HL IME LGG+  WFDRFLA+H AV YY++ +  Y++SP++AY+F + VE HA +TY +F
Sbjct: 286 HLQIMESLGGDQAWFDRFLAEHAAVLYYWLLIAFYLVSPKVAYNFMQRVEHHAADTYCEF 345

Query: 228 IKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS--RRPKIENLYDVFLNIRDD 285
           +++  E L  +P P VA+ YY   DLYLFD FQT+   +   RRP    L DVF+N+RDD
Sbjct: 346 LESNRELLASIPPPVVALNYYRNQDLYLFDSFQTSSKASGVQRRPDCNTLLDVFINVRDD 405

Query: 286 EAEHCKTMKACQT 298
           E EH  TM A Q 
Sbjct: 406 ELEHVATMFAMQN 418


>gi|157782926|gb|ABV72391.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 441

 Score =  220 bits (561), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 138/193 (71%), Gaps = 3/193 (1%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR-ADYLKVHFAESWNEMH 167
           VLD +Y  R   +F+VLET+AR+PYFA+IS+LH+YES G+WR  A+  K+HFAE WNE+H
Sbjct: 226 VLDVVYDKRPIQKFWVLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEWNELH 285

Query: 168 HLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
           HL IME LGG+  WFDRFLA+H AV YY++ +  Y++SP++AY+F + VE HA +TY +F
Sbjct: 286 HLQIMESLGGDQAWFDRFLAEHAAVLYYWLLIAFYLVSPKVAYNFMQRVEHHAADTYCEF 345

Query: 228 IKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS--RRPKIENLYDVFLNIRDD 285
           +++  E L  +P P VA+ YY   DLYLFD FQT+   +   RRP    L DVF+N+RDD
Sbjct: 346 LESNRELLASIPPPVVALNYYRNQDLYLFDSFQTSSKASGVQRRPDCNTLLDVFINVRDD 405

Query: 286 EAEHCKTMKACQT 298
           E EH  TM A Q 
Sbjct: 406 ELEHVATMFAMQN 418


>gi|449016710|dbj|BAM80112.1| plastid terminal oxidase [Cyanidioschyzon merolae strain 10D]
          Length = 430

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 97/192 (50%), Positives = 137/192 (71%), Gaps = 2/192 (1%)

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHL 169
           LD  + DR  ARF+ LET+AR+PYF+++SVLH+YE+F W   A+  + HFAE WNE+HHL
Sbjct: 169 LDWAFTDRPIARFWFLETVARMPYFSYLSVLHLYETFNWLHLAELRRTHFAEEWNELHHL 228

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
           LIM  LGG+A W DRFLA H+++ YY++ V MY++SPR++Y+FSE +E HA +TY++F+ 
Sbjct: 229 LIMSALGGDAKWSDRFLAYHLSIIYYWLLVVMYIVSPRLSYNFSELLEKHAVDTYEQFLT 288

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEF--QTARLPNSRRPKIENLYDVFLNIRDDEA 287
               +LK +PAPA+A++YY     Y F  F  +      + RP ++ LYD FLNIR DE 
Sbjct: 289 ENEHRLKALPAPAIAVRYYANEVAYTFQAFGDENGSAVETSRPPVQTLYDAFLNIRLDEE 348

Query: 288 EHCKTMKACQTH 299
           EH +TM+ACQ +
Sbjct: 349 EHVRTMEACQNY 360


>gi|303284193|ref|XP_003061387.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456717|gb|EEH54017.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 240

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 136/183 (74%), Gaps = 1/183 (0%)

Query: 116 DRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLK-VHFAESWNEMHHLLIMEE 174
           DR   RF+ LE++AR+PYF++ ++L +YE  GWWRR+  L+ VHFAE WNE HHLLIME 
Sbjct: 48  DRPIQRFWFLESVARMPYFSYNTMLTLYELLGWWRRSSELRRVHFAEEWNEYHHLLIMES 107

Query: 175 LGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEK 234
           LGG+A W DRFLAQH A+AYY V + +++ISP +AY+FSE +E+HA +TY +F     EK
Sbjct: 108 LGGDALWRDRFLAQHAALAYYLVLIALWLISPALAYNFSELIEAHAVDTYAQFADENKEK 167

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMK 294
           L+ +PAP +A  YY   D+YLFDEFQTAR  +SRRP++  L+D F  IRDDE EH  TMK
Sbjct: 168 LRTLPAPRIARAYYENDDMYLFDEFQTARPRSSRRPRVRTLHDTFCAIRDDENEHVATMK 227

Query: 295 ACQ 297
            CQ
Sbjct: 228 ECQ 230


>gi|428184645|gb|EKX53500.1| plastid terminal oxidase [Guillardia theta CCMP2712]
          Length = 301

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 103/193 (53%), Positives = 139/193 (72%), Gaps = 2/193 (1%)

Query: 110 LDALYRDR-DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHH 168
           LD  Y  + D+ARFFVLET+ARVPYFA++SVLH+YESFG+  RA ++K+H+AE+ NE+HH
Sbjct: 107 LDWYYHKKSDFARFFVLETVARVPYFAYMSVLHLYESFGYHDRAHWIKIHYAEADNELHH 166

Query: 169 LLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
           LLIME LGGN  + DR++AQH A AYY+  V  Y + PR AY+    +E+HA+ TY K+I
Sbjct: 167 LLIMEALGGNKEFSDRWIAQHAAFAYYWFCVTFYFLHPRGAYYVMSLIENHAYHTYSKYI 226

Query: 229 KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARL-PNSRRPKIENLYDVFLNIRDDEA 287
           +A    L   P+PA+A +YY GGDLYLFD F T R     RRP++++L D F +IRDDE+
Sbjct: 227 EANKSWLASQPSPAIAKEYYEGGDLYLFDAFHTTRAEEQERRPRVQSLLDTFESIRDDES 286

Query: 288 EHCKTMKACQTHG 300
           +H +TM +    G
Sbjct: 287 QHHRTMLSLVERG 299


>gi|296090657|emb|CBI41057.3| unnamed protein product [Vitis vinifera]
          Length = 314

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/297 (43%), Positives = 162/297 (54%), Gaps = 35/297 (11%)

Query: 41  SLSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDDE------PPETGSASALEKWVIKF 94
            LSR F  VQATILQ+ EEKV VEES    +FP DD       P ++ S+S L +WVIKF
Sbjct: 16  GLSRKFHSVQATILQENEEKVTVEESFQSNSFPEDDSKGCSGAPQDSSSSSVLNRWVIKF 75

Query: 95  EQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFA-FISVLHMYESFGWWRRAD 153
           EQS N+ LTESVI +LD LY DRDYARFFVLETIARVPYF   +S          W    
Sbjct: 76  EQSFNVFLTESVIKILDTLYHDRDYARFFVLETIARVPYFGECLSFFISSTGLALWEGLM 135

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISP-RMAYHF 212
                F+  W          +L GN             V  +F  + + +++  +    F
Sbjct: 136 ISLEKFSSVWP--------LKLVGNG-----------DVPLFFPYIIIVLVNAWKGMLKF 176

Query: 213 SECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272
           S     H  + + + I+        +    + +  Y     +LF      +  NS    +
Sbjct: 177 SISSHIHTADIFHEMIEQ-----PLLRGTYLQVCTYWRLRAFLFHMLVGGKNTNSLN-LL 230

Query: 273 ENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCE 329
           +NLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSY ED F  +DESG I+ QA+CE
Sbjct: 231 KNLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYPEDAF--DDESGSILPQAECE 285


>gi|255086827|ref|XP_002509380.1| quinol-to-oxygen oxidoreductase [Micromonas sp. RCC299]
 gi|226524658|gb|ACO70638.1| quinol-to-oxygen oxidoreductase [Micromonas sp. RCC299]
          Length = 472

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 103/195 (52%), Positives = 137/195 (70%), Gaps = 2/195 (1%)

Query: 105 SVIMVLDALY-RDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLK-VHFAES 162
           ++ + LD ++  +R   RF+ LET+AR+PYF++ ++L +YE  GWWRR+  L+ VHFAE 
Sbjct: 210 ALCVFLDLVFPENRPIQRFWFLETVARMPYFSYNTMLTVYELLGWWRRSSELRRVHFAEE 269

Query: 163 WNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
           WNE HHLLI E LGG+A W DRFL  H A+ YY      +++SP +AY+FSE +E+HA +
Sbjct: 270 WNEYHHLLIHESLGGDAAWRDRFLGFHSALLYYGALNVAWLLSPALAYNFSELIEAHAVD 329

Query: 223 TYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNI 282
           TY +F +     L+K+PAP +A KYY  GDLYLFDEFQTAR  +SRR ++  LYD F  I
Sbjct: 330 TYAQFAEENKATLRKLPAPRIARKYYEEGDLYLFDEFQTARPRSSRRVRVTTLYDAFCAI 389

Query: 283 RDDEAEHCKTMKACQ 297
           RDDEAEH  TM  CQ
Sbjct: 390 RDDEAEHVATMAECQ 404


>gi|323455003|gb|EGB10872.1| hypothetical protein AURANDRAFT_14460, partial [Aureococcus
           anophagefferens]
          Length = 199

 Score =  204 bits (518), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 103/192 (53%), Positives = 131/192 (68%), Gaps = 7/192 (3%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRAD--YLKVHFAESWNEM 166
            +DALY  RD+ARF+VLET+ARVPYFA++SV+H+ E+FG  R  D   ++ H+AE+ NE+
Sbjct: 8   AIDALYEGRDFARFYVLETLARVPYFAYLSVMHLRETFGDRRPGDSERMRTHYAEADNEL 67

Query: 167 HHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDK 226
           HHLLIME LGGN+   DR LAQ +A  Y++    +Y  S   AYH SE +E HAF TYD 
Sbjct: 68  HHLLIMESLGGNSSAVDRTLAQSMAFFYFWYVTVVYSFSEPAAYHLSELIEDHAFNTYDD 127

Query: 227 FIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTAR-----LPNSRRPKIENLYDVFLN 281
           FIK  G KLK MP P +A KYY   D YL D+F T +       +  RP +E+LYDVF+N
Sbjct: 128 FIKDHGPKLKGMPVPDIARKYYERDDPYLRDQFLTVKETDGGFTSRSRPPLESLYDVFVN 187

Query: 282 IRDDEAEHCKTM 293
           IRDDE EH KT+
Sbjct: 188 IRDDEKEHWKTL 199


>gi|326496132|dbj|BAJ90687.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 252

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 116/161 (72%), Gaps = 7/161 (4%)

Query: 55  QDEEEKVVVEESSPLKNFPNDDEPPETGS-------ASALEKWVIKFEQSVNILLTESVI 107
           Q E +   VE+S  ++       P E G        A     WV++ EQS N+ LT++VI
Sbjct: 67  QQEAQVAAVEDSFAVREAAATPPPEEEGGFDEELTLAGEDGDWVVRLEQSFNVFLTDTVI 126

Query: 108 MVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMH 167
           ++LD LYRDRDYARFFVLETIARVPYFAFISVLH+YE+FGW RRAD +KVHFAES NE H
Sbjct: 127 LILDILYRDRDYARFFVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFH 186

Query: 168 HLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
           HLLIME LGGN+ W DRFLA+  A  YYFVTV MY++SPRM
Sbjct: 187 HLLIMEALGGNSVWIDRFLARFSAFFYYFVTVAMYMLSPRM 227


>gi|397605676|gb|EJK59088.1| hypothetical protein THAOC_20735 [Thalassiosira oceanica]
          Length = 695

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 94/201 (46%), Positives = 143/201 (71%), Gaps = 9/201 (4%)

Query: 105 SVIMVLDALYRDRD-YARFFVLETIARVPYFAFISVLHMYESFGWWRRA-DYLKVHFAES 162
           ++  +LD ++  R+ ++RFF+LET+AR+PYF++I++LH+YES G+WRR+ D  ++HFAE 
Sbjct: 354 ALCFLLDVVFEGRNAFSRFFLLETVARMPYFSYITMLHLYESLGFWRRSSDIKRIHFAEE 413

Query: 163 WNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
           WNE HHLLIME +GG+  ++ RFLAQH AVAYY     +++ SP ++Y FSE +E+HA +
Sbjct: 414 WNEFHHLLIMESMGGDQPYWVRFLAQHSAVAYYVALCLLWIASPSLSYKFSEMLETHAVD 473

Query: 223 TYDKFIKAQGEKLKKMPAPAVAIKYYT-GGDLYLFDEFQTARLPNS----RRPKIE--NL 275
           TY +F+     KLK++P   VA++YYT G    +F E+QTA + +     R+P +   +L
Sbjct: 474 TYGQFVDENESKLKELPPSLVAVEYYTIGLSDPMFGEYQTASVNDPHRGVRKPGLSMNSL 533

Query: 276 YDVFLNIRDDEAEHCKTMKAC 296
           YDVF  IR+DE +H +TM +C
Sbjct: 534 YDVFCAIRNDEGDHVQTMSSC 554


>gi|224014510|ref|XP_002296917.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968297|gb|EED86645.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 636

 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 92/197 (46%), Positives = 141/197 (71%), Gaps = 9/197 (4%)

Query: 109 VLDALYRDRD-YARFFVLETIARVPYFAFISVLHMYESFGWWRRA-DYLKVHFAESWNEM 166
           +LD ++  R+ ++RFF+LET+AR+PYF++I++LH+YE+ G+WRR+ D  ++HFAE WNE 
Sbjct: 287 MLDVVFEGRNPFSRFFLLETVARMPYFSYITMLHLYETMGFWRRSSDIKRIHFAEEWNEF 346

Query: 167 HHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDK 226
           HHLLIME LGG+  ++ R +AQH A+AYY     ++++SP ++Y FSE +E+HA +TY +
Sbjct: 347 HHLLIMESLGGDQPYWVRLMAQHSALAYYIALCMLWMLSPTLSYKFSEMLETHAVDTYGQ 406

Query: 227 FIKAQGEKLKKMPAPAVAIKYYT-GGDLYLFDEFQTARL--PNSR----RPKIENLYDVF 279
           F+    +KLK++P    A++YYT G    +F E+QTA +  PN R       + +LYDVF
Sbjct: 407 FVDENEDKLKELPPSIAAVEYYTVGVSDPMFGEYQTASVSDPNRRVRVPGTNLRSLYDVF 466

Query: 280 LNIRDDEAEHCKTMKAC 296
           + IR+DE +H  TMK+C
Sbjct: 467 VAIRNDEGDHVSTMKSC 483


>gi|449016709|dbj|BAM80111.1| plastid terminal oxidase [Cyanidioschyzon merolae strain 10D]
          Length = 467

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 91/191 (47%), Positives = 127/191 (66%), Gaps = 1/191 (0%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHH 168
           +++ L+RDR   RF+ LE +ARVPYF+F+SVLH+YES       +  + HF E WNEMHH
Sbjct: 157 LIEMLFRDRPIERFWFLEMVARVPYFSFLSVLHLYESLDLAHLTELRRAHFIEEWNEMHH 216

Query: 169 LLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
           LLIM+ LGG+  W DRFLA H+++ YY+  V +Y+I+P +AY+FSE +E HA++TY  FI
Sbjct: 217 LLIMQALGGDGRWLDRFLAYHVSLVYYWALVLLYMIAPAVAYNFSELLEKHAYDTYAVFI 276

Query: 229 KAQGEKLKKMPAPAVAIKYYTGGDLYLFD-EFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
           +     L+ +PAP+VA  YY  G+ + F  +   A       P +  L+D F+NIRDDE 
Sbjct: 277 EQNETLLRTLPAPSVARAYYESGERFRFRADTINAETHACEGPPVATLFDAFVNIRDDEG 336

Query: 288 EHCKTMKACQT 298
           EH K M+ CQT
Sbjct: 337 EHIKMMEFCQT 347


>gi|323456443|gb|EGB12310.1| hypothetical protein AURANDRAFT_20495 [Aureococcus anophagefferens]
          Length = 242

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 140/215 (65%), Gaps = 8/215 (3%)

Query: 87  LEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESF 146
           +++ +  F + V   + + + ++      +RD+ARF+VLET+ARVPYFA++SV+H+ E+F
Sbjct: 1   MDERIFGFNKVVIDTVYDVICLLYPVTGSERDFARFYVLETVARVPYFAYLSVMHLRETF 60

Query: 147 GWWRRAD--YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVI 204
           G     D   ++ H+AE+ NE+HHLLIME LGGN+   DR LAQ +A  YY+    +Y  
Sbjct: 61  GDRDPGDSERMRTHYAEADNELHHLLIMESLGGNSSAVDRTLAQTMAFFYYWYVTVVYSF 120

Query: 205 SPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARL 264
           S   AYH SE +E HAF TYD F++  G KLK MP P +A KYY   D +LFD+F T + 
Sbjct: 121 SEPAAYHLSELIEDHAFNTYDGFLRDHGPKLKGMPVPDIARKYYERDDPFLFDQFCTVKE 180

Query: 265 PNS------RRPKIENLYDVFLNIRDDEAEHCKTM 293
           P+        RP +E+LYDVF+NIR+DE EH KT+
Sbjct: 181 PDGGEFTSRSRPPLESLYDVFVNIRNDEKEHWKTL 215


>gi|223945781|gb|ACN26974.1| unknown [Zea mays]
          Length = 131

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/134 (65%), Positives = 107/134 (79%), Gaps = 5/134 (3%)

Query: 208 MAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           MAYHFSECVE HA+ TYD+F+K   E+LK++PAP  A+ YY   DLYLFDEFQ +R P S
Sbjct: 1   MAYHFSECVERHAYSTYDEFLKLHEEELKRLPAPEAALNYYMNEDLYLFDEFQASRTPGS 60

Query: 268 RRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGC-EDESGCIVAQA 326
           RRPKI+NLYDVF+NIR+DEAEHCKTMK CQTHGNLRSPHS       C ED++ C++ + 
Sbjct: 61  RRPKIDNLYDVFVNIREDEAEHCKTMKTCQTHGNLRSPHSTP----NCLEDDTECVIPEN 116

Query: 327 DCEGIVDCIKKAVA 340
           DCEGIVDC+KK++ 
Sbjct: 117 DCEGIVDCVKKSLT 130


>gi|29244701|gb|AAO73293.1| putative oxidase [Oryza sativa Japonica Group]
          Length = 167

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 110/142 (77%), Gaps = 6/142 (4%)

Query: 40  RSLSRNFCRVQATILQDEEEK--VVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQS 97
           R+  R   R +A   Q E+++  V VEES P +    +  PP+    +A E WV+K EQS
Sbjct: 29  RAHRRRIFRAEAMKTQQEKKQTEVAVEESFPFR----ETAPPDEPLVTAEESWVVKLEQS 84

Query: 98  VNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKV 157
           VNI LTESVI +LD LYRDR+YARFFVLETIARVPYFAFIS+LHMYE+FGWWRRADY+KV
Sbjct: 85  VNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISMLHMYETFGWWRRADYIKV 144

Query: 158 HFAESWNEMHHLLIMEELGGNA 179
           HFAESWNE HHLLIMEELGGN+
Sbjct: 145 HFAESWNEFHHLLIMEELGGNS 166


>gi|219129931|ref|XP_002185130.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403309|gb|EEC43262.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 531

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 129/194 (66%), Gaps = 8/194 (4%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLK-VHFAESWNEMHHLLIMEELGGN 178
           +RFF+LET+AR+PYF++I++LH+YE+ G+WRR+  +K +HFAE  NE HHLLIME LGG+
Sbjct: 228 SRFFLLETVARMPYFSYITMLHLYETLGFWRRSAGMKRIHFAEELNEFHHLLIMESLGGD 287

Query: 179 AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKM 238
             W+ RFLAQH A+ YY     ++ ISP ++Y FSE +E+HA  TY +F+    E LKK+
Sbjct: 288 QAWWVRFLAQHSAIVYYVALCLLWGISPSLSYRFSELLETHAVSTYGQFLDENEEALKKL 347

Query: 239 PAPAVAIKYYT-GGDLYLFDEFQTARLPNS---RRP--KIENLYDVFLNIRDDEAEHCKT 292
           P P  AI+YY  G     + EFQT  +      RRP   + +LY+VF  I+ DE +H  T
Sbjct: 348 PPPLPAIEYYAFGSSDPFYAEFQTTAMSQGQPLRRPGESMLSLYEVFQAIKADELDHVST 407

Query: 293 MKAC-QTHGNLRSP 305
           M+AC     N RSP
Sbjct: 408 MEACLDPEANTRSP 421


>gi|452821392|gb|EME28423.1| plastid terminal oxidase [Galdieria sulphuraria]
          Length = 378

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 127/188 (67%)

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHL 169
           +D  Y+DR   RF+ LET+AR+PYF++ISVLH+YE+ GWWR  + LK+HFAE +NE HHL
Sbjct: 187 IDWAYKDRPVERFWFLETVARMPYFSYISVLHLYETLGWWRNGELLKIHFAEEYNEFHHL 246

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
           LIME LGG+  W DRF+A+H AV YY++ V  + +SP +AY+FSE VE+HA +TY +F++
Sbjct: 247 LIMESLGGDRKWLDRFVAEHAAVFYYWILVLYFFLSPSLAYNFSELVEAHAVDTYTEFLQ 306

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
              E LK++P P +A +YY   +LY+FDE     L +         + +F+ ++ + +  
Sbjct: 307 TNEELLKQLPPPKIAERYYLADNLYMFDEIILQVLGDLLVIISTMYFVIFVMMKWNMSRQ 366

Query: 290 CKTMKACQ 297
           C  ++  Q
Sbjct: 367 CMPVRITQ 374


>gi|125588631|gb|EAZ29295.1| hypothetical protein OsJ_13357 [Oryza sativa Japonica Group]
          Length = 244

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 105/141 (74%), Gaps = 6/141 (4%)

Query: 40  RSLSRNFCRVQATILQDEEEK--VVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQS 97
           R+  R   R +A   Q E+++  V VEES P +    +  PP+    +A E WV+K EQS
Sbjct: 29  RAHRRRIFRAEAMKTQQEKKQTEVAVEESFPFR----ETAPPDEPLVTAEESWVVKLEQS 84

Query: 98  VNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKV 157
           VNI LTESVI +LD LYRDR+YARFFVLETIARVPYFAFIS+LHMYE+FGWWRRADY+KV
Sbjct: 85  VNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFAFISMLHMYETFGWWRRADYIKV 144

Query: 158 HFAESWNEMHHLLIMEELGGN 178
           HFAESWNE HHLLIME    N
Sbjct: 145 HFAESWNEFHHLLIMEGTTEN 165


>gi|298709084|emb|CBJ31032.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 259

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/210 (46%), Positives = 127/210 (60%), Gaps = 40/210 (19%)

Query: 95  EQSVNILLTESVIMVLDAL-------YRDRDYARFFVLETIARVPYFAFISVLHMYESFG 147
           E++VN  + +    V+D L       Y +R YARF+ LETIARVPYF ++ VLH+YE+ G
Sbjct: 75  ERNVNAFMNDFNAGVVDFLKGLMVQYYGERTYARFYALETIARVPYFGYLCVLHLYETLG 134

Query: 148 WWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPR 207
            WR+A+YLKVHFAES+NE+HHLLIMEELGGN  + DR+ AQH A  Y+FV V +Y+ +PR
Sbjct: 135 KWRQAEYLKVHFAESYNELHHLLIMEELGGNVLFRDRWFAQHAAFFYFFVVVGLYLSNPR 194

Query: 208 MAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
            AY+ ++ VE HAF TYD F+    E LK+ PAP  ++     G L              
Sbjct: 195 NAYNLNQHVEEHAFSTYDSFLSDNQEALKQQPAPEASL-----GCL-------------- 235

Query: 268 RRPKIENLYDVFLNIRDDEAEHCKTMKACQ 297
                         +R+DE EH KTMKA Q
Sbjct: 236 --------------VRNDEWEHVKTMKAMQ 251


>gi|62320994|dbj|BAD94037.1| IMMUTANS (IM) [Arabidopsis thaliana]
          Length = 104

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 91/104 (87%), Gaps = 2/104 (1%)

Query: 238 MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQ 297
           MPAP +A+KYYTGGDLYLFDEFQT+R PN+RRP IENLYDVF+NIRDDEAEHCKTM+ACQ
Sbjct: 1   MPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFVNIRDDEAEHCKTMRACQ 60

Query: 298 THGNLRSPHSYSEDDFGCEDESGCIVA-QADCEGIVDCIKKAVA 340
           T G+LRSPHS  EDD   E+ESGC+V  +A CEGIVDC+KK++ 
Sbjct: 61  TLGSLRSPHSILEDD-DTEEESGCVVPEEAHCEGIVDCLKKSIT 103


>gi|226509212|ref|NP_001141555.1| alternative oxidase [Zea mays]
 gi|194705058|gb|ACF86613.1| unknown [Zea mays]
 gi|414584891|tpg|DAA35462.1| TPA: alternative oxidase [Zea mays]
          Length = 211

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/134 (64%), Positives = 104/134 (77%), Gaps = 11/134 (8%)

Query: 48  RVQATILQDEEEK--VVVEESSPLKNF--PND----DEPPETGSASALEKWVIKFEQSVN 99
           RV+A   Q E+++  V VEE +P++    P D    D+P      S+ E WV++ EQSVN
Sbjct: 46  RVEAIWKQQEKQRAEVSVEEPAPVREAAAPLDGVGADDP---MVPSSDESWVVRLEQSVN 102

Query: 100 ILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHF 159
           I LTESVI++L+ +YRDR+YARFFVLETIARVPYFAFISVLHMYE+FGWWRRADYLKVHF
Sbjct: 103 IFLTESVIILLNTVYRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYLKVHF 162

Query: 160 AESWNEMHHLLIME 173
           A+S NE HHLLIME
Sbjct: 163 AQSLNEFHHLLIME 176


>gi|297745707|emb|CBI41029.3| unnamed protein product [Vitis vinifera]
          Length = 2124

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 80/89 (89%)

Query: 121  RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
            R  +L+ +  +   +F+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW
Sbjct: 1897 RLLILKPLFLICANSFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 1956

Query: 181  WFDRFLAQHIAVAYYFVTVFMYVISPRMA 209
            WFDRFLAQHIA+ YYF+TVFMYV+SPRMA
Sbjct: 1957 WFDRFLAQHIAIFYYFMTVFMYVLSPRMA 1985


>gi|298492297|ref|YP_003722474.1| alternative oxidase ['Nostoc azollae' 0708]
 gi|298234215|gb|ADI65351.1| alternative oxidase ['Nostoc azollae' 0708]
          Length = 164

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 101/142 (71%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
           LL + ++ V++ +YR R Y RF+VLET+ RVPYF+++S+ H+Y + G+ RRAD LKV FA
Sbjct: 4   LLLDILVFVINTIYRGRPYPRFYVLETVERVPYFSYLSISHLYGTLGFCRRADGLKVDFA 63

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNE+HHLL+ME L G+    DR LA+   + YY++ V +Y++SP  AYHF E VESHA
Sbjct: 64  ESWNELHHLLMMESLEGSQLSGDRILARTTVLLYYWIIVALYIVSPGSAYHFMELVESHA 123

Query: 221 FETYDKFIKAQGEKLKKMPAPA 242
           + +Y KF+     +LK  P PA
Sbjct: 124 YNSYQKFLTEYETELKLEPTPA 145


>gi|46948047|gb|AAT07035.1| plastid terminal oxidase [Citrus sinensis]
          Length = 68

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 144 ESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYV 203
           ESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYV
Sbjct: 1   ESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYV 60

Query: 204 ISPRMAYH 211
           ISPRMAYH
Sbjct: 61  ISPRMAYH 68


>gi|400973851|emb|CCK49811.1| PTOX protein, partial [Solanum pennellii]
          Length = 91

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/85 (77%), Positives = 75/85 (88%), Gaps = 2/85 (2%)

Query: 255 LFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFG 314
           LFDEFQT+R PN+RRPKI+NLYDVF+NIRDDEAEHCKTMKACQTHG+LRSPH+   DD  
Sbjct: 1   LFDEFQTSREPNTRRPKIDNLYDVFMNIRDDEAEHCKTMKACQTHGSLRSPHTNPCDD-- 58

Query: 315 CEDESGCIVAQADCEGIVDCIKKAV 339
            ED++GC V QADC GIVDCIKK+V
Sbjct: 59  SEDDTGCSVPQADCIGIVDCIKKSV 83


>gi|190360809|gb|ACE76855.1| PTOX protein [Solanum lycopersicum]
 gi|195931491|gb|ACG56564.1| PTOX protein [Solanum lycopersicum]
 gi|195931493|gb|ACG56565.1| PTOX protein [Solanum lycopersicum]
 gi|195931495|gb|ACG56566.1| PTOX protein [Solanum lycopersicum]
 gi|195931497|gb|ACG56567.1| PTOX protein [Solanum lycopersicum]
 gi|195931499|gb|ACG56568.1| PTOX protein [Solanum lycopersicum]
 gi|195931501|gb|ACG56569.1| PTOX protein [Solanum lycopersicum]
 gi|195931503|gb|ACG56570.1| PTOX protein [Solanum lycopersicum]
 gi|195931505|gb|ACG56571.1| PTOX protein [Solanum lycopersicum]
 gi|195931507|gb|ACG56572.1| PTOX protein [Solanum lycopersicum]
 gi|195931509|gb|ACG56573.1| PTOX protein [Solanum lycopersicum]
 gi|195931511|gb|ACG56574.1| PTOX protein [Solanum lycopersicum]
 gi|195931513|gb|ACG56575.1| PTOX protein [Solanum lycopersicum]
 gi|195931515|gb|ACG56576.1| PTOX protein [Solanum lycopersicum]
 gi|195931517|gb|ACG56577.1| PTOX protein [Solanum lycopersicum]
 gi|195931519|gb|ACG56578.1| PTOX protein [Solanum lycopersicum]
 gi|195931521|gb|ACG56579.1| PTOX protein [Solanum lycopersicum]
 gi|195931523|gb|ACG56580.1| PTOX protein [Solanum lycopersicum]
 gi|195931525|gb|ACG56581.1| PTOX protein [Solanum lycopersicum]
 gi|195931527|gb|ACG56582.1| PTOX protein [Solanum lycopersicum]
 gi|195931529|gb|ACG56583.1| PTOX protein [Solanum lycopersicum]
 gi|195931531|gb|ACG56584.1| PTOX protein [Solanum lycopersicum]
 gi|195931533|gb|ACG56585.1| PTOX protein [Solanum lycopersicum]
 gi|195931535|gb|ACG56586.1| PTOX protein [Solanum lycopersicum]
 gi|195931537|gb|ACG56587.1| PTOX protein [Solanum lycopersicum]
 gi|195931539|gb|ACG56588.1| PTOX protein [Solanum lycopersicum]
 gi|195931541|gb|ACG56589.1| PTOX protein [Solanum lycopersicum]
 gi|195931543|gb|ACG56590.1| PTOX protein [Solanum lycopersicum]
 gi|195931545|gb|ACG56591.1| PTOX protein [Solanum lycopersicum]
 gi|195931547|gb|ACG56592.1| PTOX protein [Solanum lycopersicum]
 gi|195931549|gb|ACG56593.1| PTOX protein [Solanum lycopersicum]
 gi|195931551|gb|ACG56594.1| PTOX protein [Solanum lycopersicum]
 gi|195931553|gb|ACG56595.1| PTOX protein [Solanum lycopersicum]
 gi|400973857|emb|CCK49814.1| PTOX protein, partial [Solanum pimpinellifolium]
          Length = 91

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 66/85 (77%), Positives = 75/85 (88%), Gaps = 2/85 (2%)

Query: 255 LFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFG 314
           LFDEFQT+R PN+RRPKI+NLYDVF+NIRDDEAEHCKTMKACQTHG+LRSPH+   DD  
Sbjct: 1   LFDEFQTSREPNTRRPKIDNLYDVFMNIRDDEAEHCKTMKACQTHGSLRSPHTDPCDD-- 58

Query: 315 CEDESGCIVAQADCEGIVDCIKKAV 339
            ED++GC V QADC GIVDCIKK+V
Sbjct: 59  SEDDTGCSVPQADCIGIVDCIKKSV 83


>gi|195931555|gb|ACG56596.1| PTOX protein [Solanum arcanum]
 gi|400973853|emb|CCK49812.1| PTOX protein, partial [Solanum peruvianum]
 gi|400973855|emb|CCK49813.1| PTOX protein, partial [Solanum peruvianum]
          Length = 90

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/84 (77%), Positives = 74/84 (88%), Gaps = 2/84 (2%)

Query: 256 FDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGC 315
           FDEFQT+R PN+RRPKI+NLYDVF+NIRDDEAEHCKTMKACQTHG+LRSPH+   DD   
Sbjct: 1   FDEFQTSREPNTRRPKIDNLYDVFMNIRDDEAEHCKTMKACQTHGSLRSPHTDPCDD--S 58

Query: 316 EDESGCIVAQADCEGIVDCIKKAV 339
           ED++GC V QADC GIVDCIKK+V
Sbjct: 59  EDDTGCSVPQADCIGIVDCIKKSV 82


>gi|400973849|emb|CCK49810.1| PTOX protein, partial [Solanum habrochaites]
          Length = 89

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 64/83 (77%), Positives = 73/83 (87%), Gaps = 2/83 (2%)

Query: 257 DEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCE 316
           DEFQT+R PN+RRPKI+NLYDVF+NIRDDEAEHCKTMKACQTHG+LRSPH+   DD   E
Sbjct: 1   DEFQTSREPNTRRPKIDNLYDVFMNIRDDEAEHCKTMKACQTHGSLRSPHTNPCDD--SE 58

Query: 317 DESGCIVAQADCEGIVDCIKKAV 339
           D++GC V QADC GIVDCIKK+V
Sbjct: 59  DDTGCSVPQADCIGIVDCIKKSV 81


>gi|400973847|emb|CCK49809.1| PTOX protein, partial [Solanum lycopersicum]
          Length = 88

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/82 (76%), Positives = 72/82 (87%), Gaps = 2/82 (2%)

Query: 258 EFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCED 317
           EFQT+R PN+RRPKI+NLYDVF+NIRDDEAEHCKTMKACQTHG+LRSPH+   DD   ED
Sbjct: 1   EFQTSREPNTRRPKIDNLYDVFMNIRDDEAEHCKTMKACQTHGSLRSPHTDPCDD--SED 58

Query: 318 ESGCIVAQADCEGIVDCIKKAV 339
           ++GC V QADC GIVDCIKK+V
Sbjct: 59  DTGCSVPQADCIGIVDCIKKSV 80


>gi|404325820|gb|AFR58667.1| plastid terminal oxidase, partial [Dunaliella salina]
          Length = 104

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 60/102 (58%), Positives = 79/102 (77%), Gaps = 1/102 (0%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR-ADYLKVHFAESWNEMH 167
           VLD +Y +R   +F+VLET+AR+PYFA IS+LH+YES G+WR  A+  K+HF E WNE+H
Sbjct: 3   VLDVVYVNRPIQKFWVLETVARIPYFACISILHLYESLGFWRAGAELRKIHFFEEWNELH 62

Query: 168 HLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMA 209
           HL IME LGG+  WFDRFLA+H AV YY+V +  Y++SP+ A
Sbjct: 63  HLQIMESLGGDQAWFDRFLAEHAAVLYYWVCIGFYLVSPKNA 104


>gi|326781982|ref|YP_004322384.1| plastoquinol terminal oxidase [Synechococcus phage S-SM2]
 gi|310003172|gb|ADO97570.1| plastoquinol terminal oxidase [Synechococcus phage S-SM2]
          Length = 167

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 92/140 (65%), Gaps = 4/140 (2%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL 155
           + +N L     I V+D LYR RDY RF+VLE IAR PYFAF+SVLH+ ES G  R  +++
Sbjct: 2   KQLNTLTLNITIAVIDFLYRGRDYQRFWVLEEIARAPYFAFLSVLHLRESMGL-RGPEHI 60

Query: 156 KV---HFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHF 212
            +   HFA++ NE  HL  ME  GGN++W DRF A+H+ + YY+V V  Y ++PR AYH 
Sbjct: 61  YLMEEHFAQTLNETEHLEYMESRGGNSYWVDRFFARHLVLIYYWVNVVYYWVAPRSAYHL 120

Query: 213 SECVESHAFETYDKFIKAQG 232
           S  VE HA ETY K++   G
Sbjct: 121 SYEVEIHAAETYAKYLAYNG 140


>gi|404325824|gb|AFR58669.1| plastid terminal oxidase, partial [Dunaliella bardawil]
          Length = 114

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 84/111 (75%), Gaps = 1/111 (0%)

Query: 105 SVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR-ADYLKVHFAESW 163
           S+  V D +Y +R   +F+VLET+AR+PYFA IS+LH+YES G+WR  A+  K+HF E W
Sbjct: 1   SICWVFDVVYNNRPIQKFWVLETVARIPYFACISILHLYESLGFWRAGAELRKIHFFEEW 60

Query: 164 NEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSE 214
           NE+HHL IME LGG+  WFDRFLA+H AV YY+V +  Y++SP+ AY+F +
Sbjct: 61  NELHHLQIMESLGGDQAWFDRFLAEHAAVLYYWVCIGFYLVSPKNAYNFMQ 111


>gi|361069395|gb|AEW09009.1| Pinus taeda anonymous locus CL3141Contig1_02 genomic sequence
 gi|383154712|gb|AFG59497.1| Pinus taeda anonymous locus CL3141Contig1_02 genomic sequence
 gi|383154714|gb|AFG59498.1| Pinus taeda anonymous locus CL3141Contig1_02 genomic sequence
 gi|383154716|gb|AFG59499.1| Pinus taeda anonymous locus CL3141Contig1_02 genomic sequence
 gi|383154718|gb|AFG59500.1| Pinus taeda anonymous locus CL3141Contig1_02 genomic sequence
 gi|383154720|gb|AFG59501.1| Pinus taeda anonymous locus CL3141Contig1_02 genomic sequence
 gi|383154722|gb|AFG59502.1| Pinus taeda anonymous locus CL3141Contig1_02 genomic sequence
          Length = 89

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 70/89 (78%), Gaps = 3/89 (3%)

Query: 252 DLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSED 311
           DLYLFDEFQT R P SRRPKIENLYDVF NIRDDEAEHCKTMKACQTHGNL SPH    D
Sbjct: 1   DLYLFDEFQTDRTPCSRRPKIENLYDVFFNIRDDEAEHCKTMKACQTHGNLISPH---HD 57

Query: 312 DFGCEDESGCIVAQADCEGIVDCIKKAVA 340
               ED++ C +  A+C GI DC++KAV+
Sbjct: 58  TTSTEDDTECSLPPAECAGIADCVRKAVS 86


>gi|118637020|emb|CAI77910.1| plastid terminal oxidase precursor [Guillardia theta]
          Length = 222

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 88/116 (75%), Gaps = 1/116 (0%)

Query: 110 LDALYRDR-DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHH 168
           LD  Y  + D+ARFFVLET+ARVPYFA++SVLH+YESFG+  RA ++K+H+AE+ NE+HH
Sbjct: 107 LDWYYHKKSDFARFFVLETVARVPYFAYMSVLHLYESFGYHDRAHWIKIHYAEADNELHH 166

Query: 169 LLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           LLIME LGGN  + DR++AQH A AY +  V  Y + PR A++    +E+HA+ TY
Sbjct: 167 LLIMEALGGNKEFSDRWIAQHAAFAYNWFCVTFYFLHPRGAHNVMFLIENHAYHTY 222


>gi|113200623|ref|YP_717786.1| plastoquinol terminal oxidase [Synechococcus phage syn9]
 gi|76574522|gb|ABA47087.1| plastoquinol terminal oxidase [Synechococcus phage syn9]
          Length = 168

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 90/139 (64%), Gaps = 4/139 (2%)

Query: 97  SVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL- 155
           ++N  + +  + +LD LYR RDY RF+VLE IAR PYFAF+SVLH  ES G  R  ++L 
Sbjct: 3   TINKYVLDITVAILDFLYRGRDYQRFWVLEEIARAPYFAFLSVLHFRESMGL-RGPEHLY 61

Query: 156 --KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
             K HF +S NE  HL  ME  GGN++W DRF+A+H+ + YY+  V  Y +SPR AYH S
Sbjct: 62  LMKQHFEQSINETEHLEYMESRGGNSYWIDRFVAKHLVLIYYWSNVVYYWVSPRNAYHLS 121

Query: 214 ECVESHAFETYDKFIKAQG 232
             VE HA  TY K++   G
Sbjct: 122 YEVEIHAATTYAKYLALNG 140


>gi|422936201|ref|YP_007006054.1| plastoquinol terminal oxidase [Cyanophage S-TIM5]
 gi|374716481|gb|AEZ65641.1| plastoquinol terminal oxidase [Cyanophage S-TIM5]
          Length = 168

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 91/140 (65%), Gaps = 4/140 (2%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL 155
           + +N L+ +  + VLD LYR RDY RF+VLE IAR PYFAF+SVLH+ ES G  R  D+L
Sbjct: 3   KKLNSLVLKFSVDVLDYLYRGRDYQRFWVLEEIARAPYFAFLSVLHLRESMGL-RGPDHL 61

Query: 156 ---KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHF 212
              K HF +S NE  HL  ME   GNA+W DR +A+H+ + YY++ V  Y ++P+ AYH 
Sbjct: 62  YLMKQHFEQSVNETEHLEYMESRSGNAYWVDRLVAKHLVLIYYWINVVYYWLAPKSAYHL 121

Query: 213 SECVESHAFETYDKFIKAQG 232
           S  +E HA  TY K++   G
Sbjct: 122 SYEIEVHAATTYGKYLALNG 141


>gi|326782618|ref|YP_004323010.1| plastoquinol terminal oxidase [Synechococcus phage S-SM1]
 gi|310002832|gb|ADO97231.1| plastoquinol terminal oxidase [Synechococcus phage S-SM1]
          Length = 167

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 94/140 (67%), Gaps = 4/140 (2%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL 155
           +++N+L+ +  + +LD LYR RDY RF+VLE IAR PYFAF+SVLH  ES G  R  ++L
Sbjct: 2   KNLNVLVLDITVTLLDFLYRGRDYQRFWVLEEIARAPYFAFLSVLHFRESMGL-RGPEHL 60

Query: 156 ---KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHF 212
              K HF +S NE  HL  ME  GGNA++ DRF+A+H+ + YY+V V  Y ++P+ AYH 
Sbjct: 61  YLMKEHFDQSINETEHLEYMESRGGNAYFIDRFVAKHLVLIYYWVNVVYYWLAPKSAYHL 120

Query: 213 SECVESHAFETYDKFIKAQG 232
           S  VE HA  TY K++   G
Sbjct: 121 SYEVEIHAATTYAKYLAYAG 140


>gi|326783559|ref|YP_004323938.1| plastoquinol terminal oxidase [Synechococcus phage Syn19]
 gi|310005062|gb|ADO99452.1| plastoquinol terminal oxidase [Synechococcus phage Syn19]
          Length = 167

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 92/140 (65%), Gaps = 4/140 (2%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL 155
           +++N  + +  + +LD LYR RDY RF+VLE IAR PYFAF+SVLH  ES G  R  ++L
Sbjct: 2   KTLNKYVLDLTVAILDFLYRGRDYQRFWVLEEIARAPYFAFLSVLHFRESMGL-RGPEHL 60

Query: 156 ---KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHF 212
              K HF +S NE  HL  ME  GGNA++ DRF+A+H+ + YY+V V  Y ++P+ AYH 
Sbjct: 61  YLMKEHFDQSVNETEHLEYMESRGGNAYFIDRFVAKHLVLIYYWVNVVYYWLAPQSAYHL 120

Query: 213 SECVESHAFETYDKFIKAQG 232
           S  VE HA  TY K+I   G
Sbjct: 121 SYEVEVHAATTYAKYIAYNG 140


>gi|359483454|ref|XP_003632961.1| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like
           [Vitis vinifera]
          Length = 184

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/74 (79%), Positives = 65/74 (87%), Gaps = 2/74 (2%)

Query: 267 SRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQA 326
           +R P  ENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSY ED F  +DESG I+ QA
Sbjct: 111 ARVPYFENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYPEDAF--DDESGSILPQA 168

Query: 327 DCEGIVDCIKKAVA 340
           +CEGIVDCIKK+V+
Sbjct: 169 ECEGIVDCIKKSVS 182



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 79/117 (67%), Gaps = 13/117 (11%)

Query: 24  SFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDDE------ 77
             +T+  L+F        LSR F  VQATILQ+ EEKV VEES    +FP DD       
Sbjct: 7   GLSTLVNLKFG-------LSRKFHSVQATILQENEEKVTVEESFQSNSFPEDDSKGCSGA 59

Query: 78  PPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYF 134
           P ++ S+S L +WVIKFEQS N+ LTESVI +LD LY DRDYARFFVLETIARVPYF
Sbjct: 60  PQDSSSSSVLNRWVIKFEQSFNVFLTESVIKILDTLYHDRDYARFFVLETIARVPYF 116


>gi|428306064|ref|YP_007142889.1| hypothetical protein Cri9333_2513 [Crinalium epipsammum PCC 9333]
 gi|428247599|gb|AFZ13379.1| hypothetical protein Cri9333_2513 [Crinalium epipsammum PCC 9333]
          Length = 158

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 70/91 (76%)

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHL 169
           L  LY+DR Y RF+VLET++RVPYFAF+SVLH+YES G W +AD++K+HFAESWNE+HHL
Sbjct: 13  LSRLYKDRFYPRFYVLETVSRVPYFAFLSVLHLYESLGLWHQADWIKIHFAESWNELHHL 72

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVF 200
            I+E LGG  +W DR  A     AYY++ V 
Sbjct: 73  RIVEALGGGEYWLDRLFAHIGVFAYYWILVL 103



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 39/70 (55%), Gaps = 12/70 (17%)

Query: 250 GGDLYL---------FDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQ--- 297
           GG+ +L         F  +    LP  RRPKIENLYDVF+ IR+DE  H  TM ACQ   
Sbjct: 80  GGEYWLDRLFAHIGVFAYYWILVLPEERRPKIENLYDVFVEIRNDEMAHIHTMIACQRPD 139

Query: 298 THGNLRSPHS 307
               L+SPHS
Sbjct: 140 AKEQLKSPHS 149


>gi|33860894|ref|NP_892455.1| plastoquinol terminal oxidase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633836|emb|CAE18795.1| conserved hypothetical [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 169

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 91/145 (62%), Gaps = 6/145 (4%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRAD-- 153
           +++N  +  + + +LD +Y DR   RF+VLE IAR PYFAF+SVLH  ES G   + D  
Sbjct: 2   KNLNSFILNNTVKILDFVYSDRHLQRFWVLEVIARSPYFAFLSVLHFKESLG--LKNDIT 59

Query: 154 --YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYH 211
              +K HF ++ NE  HL  ME+ GG+ +W DRFLA+H+ + YY++ VF Y  SPR AY 
Sbjct: 60  MFLMKEHFYQAINETEHLKEMEKRGGDKFWIDRFLARHLVLVYYWIMVFYYFCSPRNAYD 119

Query: 212 FSECVESHAFETYDKFIKAQGEKLK 236
            +  +E HAF TY K++K   E  K
Sbjct: 120 VNIKIEEHAFNTYTKYLKDHPEDQK 144


>gi|326782244|ref|YP_004322645.1| plastoquinol terminal oxidase [Prochlorococcus phage P-HM1]
 gi|310004451|gb|ADO98844.1| plastoquinol terminal oxidase [Prochlorococcus phage P-HM1]
          Length = 167

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 64/135 (47%), Positives = 88/135 (65%), Gaps = 4/135 (2%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADY- 154
           +  N  + ++ I +LD LYR RD+ RF+VLE IAR PYF+FISVLH  ES G  R  D+ 
Sbjct: 2   KKFNTWVLDTTIYILDFLYRGRDFQRFWVLEVIARAPYFSFISVLHFRESLGL-RGEDHI 60

Query: 155 --LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHF 212
             +K HF ++ NE  HL  ME+ GG+ +W DRFLA+H+ + YY++ V  Y+  P  AY  
Sbjct: 61  YLMKEHFYQALNETEHLEEMEKRGGDQYWIDRFLAKHLVLVYYWIMVGYYLADPSNAYDI 120

Query: 213 SECVESHAFETYDKF 227
           +  +E HAFETY K+
Sbjct: 121 NMKIEKHAFETYTKY 135


>gi|312281410|ref|YP_214658.2| plastoquinol terminal oxidase [Prochlorococcus phage P-SSM4]
 gi|301153894|gb|AAX46898.2| plastoquinol terminal oxidase [Prochlorococcus phage P-SSM4]
 gi|451989022|gb|AGF91496.1| plastoquinol terminal oxidase [Cyanophage P-SS1]
          Length = 166

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/135 (47%), Positives = 88/135 (65%), Gaps = 4/135 (2%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADY- 154
           + +N L+ +  I +LD LYR RD+ RF+VLE IAR PYF+FISVLH  ES G  R  D+ 
Sbjct: 2   KQLNTLVLDVTIYILDFLYRGRDFQRFWVLEVIARAPYFSFISVLHFRESLGL-RGEDHI 60

Query: 155 --LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHF 212
             +K HF ++ NE  HL  ME   GN +W DRF A+H+ + YY++ V  Y+I P  AY  
Sbjct: 61  YLMKEHFYQALNETEHLEEMELREGNKYWIDRFFAKHLVLVYYWIMVGYYLIDPTNAYDI 120

Query: 213 SECVESHAFETYDKF 227
           +  +E+HA+ETY K+
Sbjct: 121 NMKIEAHAYETYVKY 135


>gi|157412700|ref|YP_001483566.1| hypothetical protein P9215_03641 [Prochlorococcus marinus str. MIT
           9215]
 gi|157387275|gb|ABV49980.1| conserved hypothetical [Prochlorococcus marinus str. MIT 9215]
          Length = 169

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 2/135 (1%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWW--RRAD 153
           + +N L+  S I  LD +Y  R   RF+VLE IAR PYFAF+SVLH  ES G    +   
Sbjct: 2   KKLNSLILNSTINFLDFIYSGRSLQRFWVLEVIARSPYFAFLSVLHFKESLGIKNEKTMI 61

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
            +K HF ++ NE  HL  ME+ GG+ +W DRF A+H+ + YY++ VF Y +SP  AY  +
Sbjct: 62  LMKEHFYQAINETEHLKEMEKRGGDRFWIDRFFARHLVLVYYWIMVFYYFLSPANAYDVN 121

Query: 214 ECVESHAFETYDKFI 228
             +E HAFETY K++
Sbjct: 122 IKIEEHAFETYSKYL 136


>gi|78778726|ref|YP_396838.1| plastoquinol terminal oxidase [Prochlorococcus marinus str. MIT
           9312]
 gi|78712225|gb|ABB49402.1| plastoquinol oxidase immutans [Prochlorococcus marinus str. MIT
           9312]
          Length = 169

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 94/147 (63%), Gaps = 4/147 (2%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWW--RRAD 153
           + +N L+  + + +LD +Y  R+  RF+VLE IAR PYFAF+SVLH  ES G    +   
Sbjct: 2   KKLNSLILNNTVNLLDFIYSGRNLQRFWVLEVIARSPYFAFLSVLHFKESLGIKNDKTMF 61

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
            +K HF ++ NE  HL  ME+ GG+ +W DRF A+H+ + YY++ VF Y  SP  AY  +
Sbjct: 62  LMKEHFYQAINETEHLKEMEKRGGDKFWIDRFFARHLVLVYYWIMVFYYFFSPANAYDVN 121

Query: 214 ECVESHAFETYDKFIK--AQGEKLKKM 238
             +E HAF+TY K++K   + +K+K++
Sbjct: 122 IKIEEHAFKTYSKYLKDNPKDQKIKEI 148


>gi|126695702|ref|YP_001090588.1| hypothetical protein P9301_03641 [Prochlorococcus marinus str. MIT
           9301]
 gi|126542745|gb|ABO16987.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9301]
          Length = 169

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 84/135 (62%), Gaps = 2/135 (1%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWW--RRAD 153
           + +N L+    +  LD +Y  R   RF+VLE IAR PYFAF+SVLH  ES G    +   
Sbjct: 2   KKLNSLILNGTVKFLDFIYSGRSLQRFWVLEVIARSPYFAFLSVLHFKESLGIKNEKTMI 61

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
            +K HF ++ NE  HL  ME+ GG+ +W DRF A+H+ + YY++ VF Y ISP  AY  +
Sbjct: 62  LMKEHFYQAINETEHLKEMEKRGGDRFWIDRFFARHLVLVYYWIMVFYYFISPANAYDVN 121

Query: 214 ECVESHAFETYDKFI 228
             +E HAFETY K++
Sbjct: 122 IKIEEHAFETYSKYL 136


>gi|326783860|ref|YP_004324254.1| plastoquinol terminal oxidase [Synechococcus phage S-SSM7]
 gi|310003872|gb|ADO98267.1| plastoquinol terminal oxidase [Synechococcus phage S-SSM7]
          Length = 167

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 89/147 (60%), Gaps = 6/147 (4%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRAD-- 153
           +  N ++ +  I +LD LYR+R + RF+VLE IAR PYFAFISVLH  ES G   R D  
Sbjct: 2   KQFNTIILDITIGILDFLYRNRPFQRFWVLEVIARAPYFAFISVLHFRESLG--LRGDDH 59

Query: 154 --YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYH 211
              +K HF ++ NE  HL  ME   GN +W DRF A+H+ + YY++ V  Y+I P  AY 
Sbjct: 60  IYLMKEHFYQALNETEHLEEMELREGNKYWIDRFFAKHLVLVYYWIMVGYYLIDPVDAYD 119

Query: 212 FSECVESHAFETYDKFIKAQGEKLKKM 238
            +  +ESHA+ETY K+     E  K M
Sbjct: 120 INMKIESHAYETYVKYSAWHPEDKKIM 146


>gi|72382269|ref|YP_291624.1| plastoquinol terminal oxidase [Prochlorococcus marinus str. NATL2A]
 gi|124025841|ref|YP_001014957.1| hypothetical protein NATL1_11341 [Prochlorococcus marinus str.
           NATL1A]
 gi|72002119|gb|AAZ57921.1| plastoquinol oxidase immutans [Prochlorococcus marinus str. NATL2A]
 gi|123960909|gb|ABM75692.1| Hypothetical protein NATL1_11341 [Prochlorococcus marinus str.
           NATL1A]
          Length = 167

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 85/135 (62%), Gaps = 2/135 (1%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWR--RAD 153
           +  N L+ +  + +LD +Y  R   RF+VLE IAR PYFAF+SVLH+ ES G        
Sbjct: 2   KGFNSLVLDFSVSILDRIYEGRPIQRFWVLEVIARAPYFAFLSVLHLQESLGLKTPLSNK 61

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
            +K HF ++ NE  HL  ME   GN +W DRFLA+H+ + YY+V VF Y++SP  AY  +
Sbjct: 62  LMKAHFYQAINETEHLEEMESRSGNRYWVDRFLARHLVLFYYWVMVFYYLLSPSNAYDIN 121

Query: 214 ECVESHAFETYDKFI 228
             +E HA+ETY K++
Sbjct: 122 IKIEEHAYETYAKYL 136


>gi|91070093|gb|ABE11017.1| plastoquinol terminal oxidase [uncultured Prochlorococcus marinus
           clone ASNC729]
          Length = 169

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 84/135 (62%), Gaps = 2/135 (1%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWW--RRAD 153
           + +N L+  S +  LD +Y  R   RF+VLE IAR PYFAF+SVLH  ES G    +   
Sbjct: 2   KKLNSLILNSTVNFLDFIYSGRSLQRFWVLEVIARSPYFAFLSVLHFKESLGIKNEKTMI 61

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
            +K HF ++ NE  HL  ME+ GG+ +W DRF A+H+ + YY++ VF Y  SP  AY  +
Sbjct: 62  LMKEHFYQAINETEHLKEMEKRGGDKFWIDRFFARHLVLVYYWIMVFYYFFSPANAYDVN 121

Query: 214 ECVESHAFETYDKFI 228
             +E HAFETY K++
Sbjct: 122 IKIEEHAFETYSKYL 136


>gi|326782855|ref|YP_004323253.1| plastoquinol terminal oxidase [Prochlorococcus phage P-RSM4]
 gi|310004114|gb|ADO98508.1| plastoquinol terminal oxidase [Prochlorococcus phage P-RSM4]
          Length = 167

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 88/135 (65%), Gaps = 4/135 (2%)

Query: 97  SVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLK 156
            +N ++  + + ++D LY+DRD+ RF+VLE IAR PYFAF+SVLH  ES G  R  +++ 
Sbjct: 3   DLNTIILNTTVAIIDFLYKDRDFQRFWVLEEIARAPYFAFLSVLHFRESMGL-RGPEHIY 61

Query: 157 V---HFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
           +   HF ++ NE  HL  ME  GGNA+W DR  A+H+ + YY++ V  Y + P  AY  +
Sbjct: 62  LMEEHFGQTLNETEHLEYMESRGGNAYWIDRAFAKHLVLIYYWIMVVYYGLFPVSAYDLN 121

Query: 214 ECVESHAFETYDKFI 228
           E VE HA  TY++++
Sbjct: 122 EKVEWHAAHTYEEYL 136


>gi|123967902|ref|YP_001008760.1| hypothetical protein A9601_03651 [Prochlorococcus marinus str.
           AS9601]
 gi|123198012|gb|ABM69653.1| conserved hypothetical protein [Prochlorococcus marinus str.
           AS9601]
          Length = 169

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 84/135 (62%), Gaps = 2/135 (1%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWW--RRAD 153
           + +N L+    +  LD +Y  R   RF+VLE IAR PYFAF+SVLH  ES G    +   
Sbjct: 2   KKINSLILNITVNFLDFIYSGRSLQRFWVLEVIARSPYFAFLSVLHFKESLGIKNEKTMI 61

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
            +K HF ++ NE  HL  ME+ GG+ +W DRF A+H+ + YY++ VF Y +SP  AY  +
Sbjct: 62  LMKEHFYQAINETEHLKEMEKRGGDRFWIDRFFARHLVLVYYWIMVFYYFLSPANAYDVN 121

Query: 214 ECVESHAFETYDKFI 228
             +E HAFETY K++
Sbjct: 122 IKIEEHAFETYSKYL 136


>gi|418487259|ref|YP_007001607.1| hypothetical protein [Synechococcus phage metaG-MbCM1]
 gi|379363142|gb|AFD02956.1| hypothetical protein [Synechococcus phage metaG-MbCM1]
          Length = 144

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 86/136 (63%), Gaps = 4/136 (2%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADY- 154
           ++ N L+    + V+D LY  RD  RF+VLE IAR P F+F+SVLH  ES G  R  ++ 
Sbjct: 2   KTFNNLILSLTVAVIDFLYPGRDIPRFWVLEEIARAPKFSFMSVLHFRESLGL-RGPEHI 60

Query: 155 --LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHF 212
             +K HFA++ NE  HL  ME  GGN  W DR  A+H+ + YY++ V  Y ISP  AYH 
Sbjct: 61  YLMKEHFAQTLNETEHLEEMESRGGNKHWVDRAFARHLVLLYYWIMVVYYAISPVNAYHI 120

Query: 213 SECVESHAFETYDKFI 228
           +E +E HA ETY+K++
Sbjct: 121 NEQIEHHAGETYNKYL 136


>gi|254525473|ref|ZP_05137525.1| plastoquinol terminal oxidase [Prochlorococcus marinus str. MIT
           9202]
 gi|221536897|gb|EEE39350.1| plastoquinol terminal oxidase [Prochlorococcus marinus str. MIT
           9202]
          Length = 151

 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 75/118 (63%), Gaps = 2/118 (1%)

Query: 113 LYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRAD--YLKVHFAESWNEMHHLL 170
           +Y  R   RF+VLE IAR PYFAF+SVLH  ES G         +K HF ++ NE  HL 
Sbjct: 1   MYSGRSLQRFWVLEVIARSPYFAFLSVLHFKESLGIKNEKTMILMKEHFYQAINETEHLK 60

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
            ME+ GG+ +W DRF A+H+ + YY++ VF Y +SP  AY  +  +E HAFETY K++
Sbjct: 61  EMEKRGGDRFWIDRFFARHLVLVYYWIMVFYYFLSPANAYDVNIKIEEHAFETYSKYL 118


>gi|326784331|ref|YP_004324715.1| plastoquinol terminal oxidase [Synechococcus phage S-SSM5]
 gi|310003562|gb|ADO97958.1| plastoquinol terminal oxidase [Synechococcus phage S-SSM5]
          Length = 167

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYL 155
           ++ N ++    + ++D LY  RD+ RF+VLE IAR PYFAF+SVLH  ES G  R   +L
Sbjct: 2   KTFNTVVLNITVAIIDFLYEGRDFQRFWVLEEIARAPYFAFLSVLHFRESMGL-RGEIHL 60

Query: 156 KV---HFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHF 212
            +   HF+++ NE  HL  ME+ GG  ++ DR  A+ + + YY++ V  Y + P  AY  
Sbjct: 61  HLMEEHFSQTLNETEHLEYMEKRGGADYFIDRAFARSLVLIYYWIMVVYYGLFPVSAYDL 120

Query: 213 SECVESHAFETYDKFI 228
           +E VE HA  TY+K++
Sbjct: 121 NEKVEWHAAHTYEKYL 136


>gi|108712087|gb|ABF99882.1| Immutans protein, putative, expressed [Oryza sativa Japonica Group]
 gi|215707219|dbj|BAG93679.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 154

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 69/104 (66%), Gaps = 6/104 (5%)

Query: 40  RSLSRNFCRVQATILQDEEEK--VVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQS 97
           R+  R   R +A   Q E+++  V VEES P +    +  PP+    +A E WV+K EQS
Sbjct: 29  RAHRRRIFRAEAMKTQQEKKQTEVAVEESFPFR----ETAPPDEPLVTAEESWVVKLEQS 84

Query: 98  VNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH 141
           VNI LTESVI +LD LYRDR+YARFFVLETIARVPYF    V+H
Sbjct: 85  VNIFLTESVITILDGLYRDRNYARFFVLETIARVPYFGEDLVVH 128


>gi|323455781|gb|EGB11649.1| hypothetical protein AURANDRAFT_21606, partial [Aureococcus
           anophagefferens]
          Length = 73

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/73 (54%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 139 VLHMYESFGWWRR-ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFV 197
           +LH+YE+ GWWRR A+  +VHFA+  NE HHLL+ME LGG+  W DRF AQH A+ YY+V
Sbjct: 1   MLHLYETLGWWRRSAEAKRVHFAQEVNEFHHLLVMESLGGDRRWADRFFAQHAAIIYYWV 60

Query: 198 TVFMYVISPRMAY 210
            + ++++SP  AY
Sbjct: 61  LIALWLLSPTTAY 73


>gi|414584892|tpg|DAA35463.1| TPA: hypothetical protein ZEAMMB73_879491 [Zea mays]
          Length = 151

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 61/91 (67%), Gaps = 4/91 (4%)

Query: 57  EEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRD 116
           EE   V E ++PL     DD  P   S+   E WV++ EQSVNI LTESVI++L+ +YRD
Sbjct: 64  EEPAPVREAAAPLDGVGADD--PMVPSSD--ESWVVRLEQSVNIFLTESVIILLNTVYRD 119

Query: 117 RDYARFFVLETIARVPYFAFISVLHMYESFG 147
           R+YARFFVLETIARVPYF   SVL    S G
Sbjct: 120 RNYARFFVLETIARVPYFGEGSVLSYACSCG 150


>gi|388490726|gb|AFK33429.1| unknown [Lotus japonicus]
          Length = 52

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/48 (79%), Positives = 41/48 (85%)

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
           MHHLLIMEELGGNAWWFDRFLAQHIA+ YYF+T  MY ISPRMA   +
Sbjct: 1   MHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYTISPRMALQIT 48


>gi|255642377|gb|ACU21452.1| unknown [Glycine max]
          Length = 133

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 65/103 (63%), Gaps = 13/103 (12%)

Query: 39  PRSLSRNFCRV---------QATILQDEEEKVVVEESSPLKNFPNDDEPPETG----SAS 85
           P+ LS ++ R+         ++++LQD E+KV+V +S P K  P       TG    + S
Sbjct: 16  PKPLSSSYSRIHTAPQLFRARSSLLQDNEKKVIVHDSFPSKTSPLHTADKSTGGDSINTS 75

Query: 86  ALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETI 128
           A EK +IK EQSVNI LT+SVI +LD LY DR YARFFVLETI
Sbjct: 76  AFEKRIIKVEQSVNIFLTDSVIKILDTLYHDRHYARFFVLETI 118


>gi|297722703|ref|NP_001173715.1| Os03g0847500 [Oryza sativa Japonica Group]
 gi|255675049|dbj|BAH92443.1| Os03g0847500, partial [Oryza sativa Japonica Group]
          Length = 44

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 38/39 (97%)

Query: 135 AFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME 173
           AFIS+LHMYE+FGWWRRADY+KVHFAESWNE HHLLIME
Sbjct: 3   AFISMLHMYETFGWWRRADYIKVHFAESWNEFHHLLIME 41


>gi|255556647|ref|XP_002519357.1| Alternative oxidase, mitochondrial precursor, putative [Ricinus
           communis]
 gi|223541424|gb|EEF42974.1| Alternative oxidase, mitochondrial precursor, putative [Ricinus
           communis]
          Length = 352

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  +R R   R  +LET+A VP      +LH+     + +   ++K    E+ NE  HL+
Sbjct: 166 DIFFRRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMHLM 225

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
            M EL     W++R L   +   ++     +Y++SP++A+  +  +E  A  +Y +F+K 
Sbjct: 226 TMVEL-VQPRWYERLLVLAVQGVFFNAYFVLYLLSPKLAHRITGYLEEEAIHSYTEFLKD 284

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             E K++ +PAPA++I Y+                   R PK   L DV   IR DEA H
Sbjct: 285 IKEGKIENIPAPAISIDYW-------------------RLPKDATLEDVITVIRADEAHH 325


>gi|255929041|ref|YP_003097353.1| plastoquinol termianl oxidase [Synechococcus phage S-RSM4]
 gi|255705327|emb|CAR63316.1| plastoquinol termianl oxidase [Synechococcus phage S-RSM4]
          Length = 116

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%)

Query: 155 LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSE 214
           +K HFA+S NE  HL  ME  GGN ++ DRF+A+H+ + YY+V V  Y ++PR AYH S 
Sbjct: 12  MKEHFAQSVNETEHLEYMESRGGNTYFIDRFVAKHLVLIYYWVNVVYYWVAPRSAYHLSY 71

Query: 215 CVESHAFETYDKFIKAQGEKLK 236
            VE HA  TY K +   G   K
Sbjct: 72  EVEVHAATTYAKHLALNGHDDK 93


>gi|283488059|gb|ADB24723.1| mitochondrial alternative oxidase 2a [Daucus carota]
 gi|283488061|gb|ADB24724.1| mitochondrial alternative oxidase 2a [Daucus carota]
          Length = 338

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     + +   ++K    E+ NE  HL+
Sbjct: 152 DVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMHLM 211

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++RFL   +   ++     +Y++SP++A+     +E  A  +Y +++K 
Sbjct: 212 TMVELVKPK-WYERFLVLTVQGVFFNAFFVLYMMSPKVAHRVVGYLEEEAIHSYTEYLKD 270

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +   ++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 271 IESGAIENVPAPAIAIDYW-------------------RLPKDAKLKDVITVIRADEAHH 311


>gi|225571961|gb|ABZ81229.2| mitochondrial alternative oxidase 2a [Daucus carota]
          Length = 329

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     + +   ++K    E+ NE  HL+
Sbjct: 143 DVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMHLM 202

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++RFL   +   ++     +Y++SP++A+     +E  A  +Y +++K 
Sbjct: 203 TMVELVKPK-WYERFLVLTVQGVFFNAFFVLYMMSPKVAHRVVGYLEEEAIHSYTEYLKD 261

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +   ++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 262 IESGAIENVPAPAIAIDYW-------------------RLPKDAKLKDVITVIRADEAHH 302


>gi|89474873|gb|AAP33163.2| mitochondrial alternative oxidase 2 [Cucumis sativus]
          Length = 346

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 160 DIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 219

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
            M EL     W++R L   +   ++     +Y++SP++A+     +E  A  +Y +++K 
Sbjct: 220 TMIEL-VQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTEYLKD 278

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             E K++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 279 INEGKIENVPAPAIAIDYW-------------------RLPKDARLKDVITVIRADEAHH 319


>gi|449438777|ref|XP_004137164.1| PREDICTED: ubiquinol oxidase, mitochondrial-like [Cucumis sativus]
 gi|449532455|ref|XP_004173196.1| PREDICTED: ubiquinol oxidase, mitochondrial-like [Cucumis sativus]
          Length = 346

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 160 DIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 219

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
            M EL     W++R L   +   ++     +Y++SP++A+     +E  A  +Y +++K 
Sbjct: 220 TMIEL-VQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTEYLKD 278

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             E K++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 279 INEGKIENVPAPAIAIDYW-------------------RLPKDARLKDVITVIRADEAHH 319


>gi|33865421|ref|NP_896980.1| plastoquinol terminal oxidase [Synechococcus sp. WH 8102]
 gi|33632590|emb|CAE07402.1| possible oxidase [Synechococcus sp. WH 8102]
          Length = 207

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 83/187 (44%), Gaps = 13/187 (6%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRA---DYLKVHFAESWNE 165
           VL+ ++   D  R   LE IAR  Y A  S  H  E+ G  +     D L++   +  NE
Sbjct: 21  VLNLVWGKADERRAASLEIIARTAYTAEESACHYLETIGLDKEGTIRDTLELARYQDTNE 80

Query: 166 M-HHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
             H  +   +L G   W DRFLA+HIAV  Y+V     +I   MA    E VE  A +TY
Sbjct: 81  QTHEDIFARDLDGLKNWGDRFLARHIAVVIYWVFAITTLIDHEMAALLGEAVEVEAVKTY 140

Query: 225 DKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
            + +K Q E+    PA   A  Y+   +       +   +P S R       DV   I  
Sbjct: 141 RRMLKEQPEEWLDQPAAPTATHYWEKPNSMW--RVRGDHMPGSMR-------DVVEAIVR 191

Query: 285 DEAEHCK 291
           DEA+H K
Sbjct: 192 DEADHVK 198


>gi|351724097|ref|NP_001235766.1| ubiquinol oxidase 2, mitochondrial [Glycine max]
 gi|3913067|sp|Q41266.2|AOX2_SOYBN RecName: Full=Ubiquinol oxidase 2, mitochondrial; AltName:
           Full=Alternative oxidase 2; Flags: Precursor
 gi|1946336|gb|AAB97285.1| alternative oxidase 2a [Glycine max]
          Length = 333

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     + +   ++K    E+ NE  HL+
Sbjct: 147 DLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMHLM 206

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++     +Y++SP++A+     +E  A  +Y +++K 
Sbjct: 207 TMVELVKPK-WYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLKD 265

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +   ++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 266 LESGAIENVPAPAIAIDYW-------------------RLPKDARLKDVITVIRADEAHH 306


>gi|32130599|gb|AAP68984.1| alternative oxidase 2a [Glycine max]
          Length = 333

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     + +   ++K    E+ NE  HL+
Sbjct: 147 DLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMHLM 206

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++     +Y++SP++A+     +E  A  +Y +++K 
Sbjct: 207 TMVELVKPK-WYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLKD 265

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +   ++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 266 LESGAIENVPAPAIAIDYW-------------------RLPKDARLKDVITVIRADEAHH 306


>gi|291245406|gb|ADD84880.1| mitochondrial AOX2 [Citrullus lanatus]
          Length = 349

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 163 DIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 222

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
            M EL     W++R L   +   ++     +Y++SP++A+     +E  A  +Y +++K 
Sbjct: 223 TMIELVQPK-WYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTEYLKD 281

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             E K++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 282 IDEGKIENVPAPAIAIDYW-------------------RLPKDARLKDVITVIRADEAHH 322


>gi|225571963|gb|ABZ81230.2| mitochondrial alternative oxidase 2b [Daucus carota]
          Length = 319

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D L++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 133 DILFKRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 192

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
            M EL     W +R L   +   ++     +Y++SP++A+     +E  A  +Y +++K 
Sbjct: 193 TMVEL-VQPKWHERLLVLAVQGVFFNAFFVLYILSPKLAHRIVGYLEEEAIHSYTEYLKD 251

Query: 231 QGEKL-KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               L + +PAPA++I Y+                   R P+   L DV L IR DEA H
Sbjct: 252 IDRGLIENVPAPAISIDYW-------------------RLPQDAKLRDVILVIRADEAHH 292


>gi|122058944|gb|ABM66368.1| mitochondrial alternative oxidase 2a [Vigna unguiculata]
          Length = 329

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 25/182 (13%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     + +   ++K    E+ NE  HL+
Sbjct: 143 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALMEEAENERMHLM 202

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFI 228
            M EL     W++R L   IAV   F   F  +Y++SP++A+     +E  A  +Y +++
Sbjct: 203 TMVELVKPK-WYERLLV--IAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYL 259

Query: 229 K-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
           K  +   ++ +PAPA+AI Y+                   R PK   L DV   IR DEA
Sbjct: 260 KDIESGAIENVPAPAIAIDYW-------------------RLPKDAKLKDVITVIRADEA 300

Query: 288 EH 289
            H
Sbjct: 301 HH 302


>gi|30697967|ref|NP_201226.2| alternative oxidase 2 [Arabidopsis thaliana]
 gi|21264382|sp|O22049.2|AOX2_ARATH RecName: Full=Ubiquinol oxidase 2, mitochondrial; AltName:
           Full=Alternative oxidase 2; Flags: Precursor
 gi|15216224|dbj|BAA22636.2| alternative oxidase [Arabidopsis thaliana]
 gi|67633916|gb|AAY78882.1| mitochondrial alternative oxidase 2 [Arabidopsis thaliana]
 gi|332010472|gb|AED97855.1| alternative oxidase 2 [Arabidopsis thaliana]
          Length = 353

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 167 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLM 226

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL    W ++R L   +   ++      YVISPR+A+     +E  A  +Y +F+K 
Sbjct: 227 TMMELVKPKW-YERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLKD 285

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               K++ + APA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 286 IDNGKIENVAAPAIAIDYW-------------------RLPKDATLKDVVTVIRADEAHH 326


>gi|14572654|emb|CAC42836.1| putative alternative oxidase [Vigna unguiculata]
          Length = 329

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 25/182 (13%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     + +   ++K    E+ NE  HL+
Sbjct: 143 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALMEEAENERMHLM 202

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFI 228
            M EL     W++R L   IAV   F   F  +Y++SP++A+     +E  A  +Y +++
Sbjct: 203 TMVELVKPK-WYERLLV--IAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYL 259

Query: 229 K-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
           K  +   ++ +PAPA+AI Y+                   R PK   L DV   IR DEA
Sbjct: 260 KDIESGAIENVPAPAIAIDYW-------------------RLPKDAKLKDVITVIRADEA 300

Query: 288 EH 289
            H
Sbjct: 301 HH 302


>gi|9759397|dbj|BAB09852.1| alternative oxidase 2 [Arabidopsis thaliana]
          Length = 282

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 96  DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLM 155

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL    W ++R L   +   ++      YVISPR+A+     +E  A  +Y +F+K 
Sbjct: 156 TMMELVKPKW-YERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLKD 214

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               K++ + APA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 215 IDNGKIENVAAPAIAIDYW-------------------RLPKDATLKDVVTVIRADEAHH 255


>gi|488826|emb|CAA55892.1| alternative oxidase [Mangifera indica]
          Length = 274

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+       +   ++K    E+ NE  HL+
Sbjct: 88  DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENERMHLM 147

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++     +YV+SP++A+     +E  A  +Y +++K 
Sbjct: 148 TMVELVQPK-WYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTEYLKD 206

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                +K +PAPA+AI Y+                   R PK   L DV   +R DEA H
Sbjct: 207 IDSGAIKNIPAPAIAIDYW-------------------RLPKDATLKDVITVVRADEAHH 247


>gi|3915618|sp|Q40294.2|AOX1_MANIN RecName: Full=Ubiquinol oxidase, mitochondrial; AltName:
           Full=Alternative oxidase; Flags: Precursor
          Length = 318

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+       +   ++K    E+ NE  HL+
Sbjct: 132 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENERMHLM 191

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++     +YV+SP++A+     +E  A  +Y +++K 
Sbjct: 192 TMVELVQPK-WYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTEYLKD 250

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                +K +PAPA+AI Y+                   R PK   L DV   +R DEA H
Sbjct: 251 IDSGAIKNIPAPAIAIDYW-------------------RLPKDATLKDVITVVRADEAHH 291


>gi|225448273|ref|XP_002274470.1| PREDICTED: alternative oxidase, mitochondrial [Vitis vinifera]
          Length = 320

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 134 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSGGWVKALLEEAENERMHLM 193

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++     +YV+SP+ A+     +E  A  +Y +F+K 
Sbjct: 194 TMVEL-VRPKWYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVVGYLEEEAIHSYTEFLKD 252

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 253 IDSGAIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 293


>gi|31322552|gb|AAP35170.1| alternative oxidase [Cucumis sativus]
          Length = 214

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 28  DIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 87

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
            M EL     W++R L   +   ++     +Y++SP++A+     +E  A  +Y +++K 
Sbjct: 88  TMIEL-VQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTEYLKD 146

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             E K++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 147 INEGKIENVPAPAIAIDYW-------------------RLPKDARLKDVITVIRADEAHH 187


>gi|171198301|gb|ACB45425.1| mitochondrial alternative oxidase 2 [Vitis vinifera]
          Length = 320

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 134 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSGGWVKALLEEAENERMHLM 193

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++     +YV+SP+ A+     +E  A  +Y +F+K 
Sbjct: 194 TMVEL-VRPKWYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVVGYLEEEAIHSYTEFLKD 252

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 253 IDSGAIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 293


>gi|345505255|gb|AEN99850.1| mitochondrial AOX2 [Citrullus lanatus]
          Length = 349

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 163 DIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGVWIKALLEEAENERMHLM 222

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
            M EL     W++R L   +   ++     +Y++SP++A+     +E  A  +Y +++K 
Sbjct: 223 TMIELVQPK-WYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTEYLKD 281

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             E K++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 282 IDEGKIENVPAPAIAIDYW-------------------RLPKDARLKDVITVIRADEAHH 322


>gi|168044781|ref|XP_001774858.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673752|gb|EDQ60270.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 289

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 21/197 (10%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRAD 153
           +  S+   L +S+ +  D  ++ R   R  +LET+A VP      +LH      +     
Sbjct: 86  YTDSIAYWLVKSLRVPSDMFFKKRYDVRAMMLETVAAVPGMVGGMLLHCKSLRKFQNSGG 145

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
           ++K    E+ NE  HL+   E+    WW +R L   +   ++     +Y++SP++A+  +
Sbjct: 146 WIKALLEEAENERMHLMTFMEVAQPKWW-ERALVFAVQGVFFNAYFLLYLVSPKIAHRIT 204

Query: 214 ECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272
             +E  A  +Y +F+K   E   +  PAP++AI Y+                   R PK 
Sbjct: 205 GYLEEEAVYSYTQFLKMIDEGHFQNGPAPSIAIDYW-------------------RLPKD 245

Query: 273 ENLYDVFLNIRDDEAEH 289
             + DV + +R DEA H
Sbjct: 246 ATIRDVVMVVRADEAHH 262


>gi|296086812|emb|CBI32961.3| unnamed protein product [Vitis vinifera]
          Length = 327

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 141 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSGGWVKALLEEAENERMHLM 200

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++     +YV+SP+ A+     +E  A  +Y +F+K 
Sbjct: 201 TMVELVRPK-WYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVVGYLEEEAIHSYTEFLKD 259

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 260 IDSGAIENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADEAHH 300


>gi|357165634|ref|XP_003580446.1| PREDICTED: alternative oxidase 1a, mitochondrial-like [Brachypodium
           distachyon]
          Length = 330

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 37/194 (19%)

Query: 105 SVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHF 159
           S+ + +D  ++ R  +   +LET+A VP      +LH+     +E  G W RA       
Sbjct: 138 SLRVPMDLFFQRRHASHALLLETVAAVPPMVGGMLLHLRSLRRFEHSGGWIRAL-----M 192

Query: 160 AESWNEMHHLLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECV 216
            E+ NE  HL+   E+    WW +R L   AQ + V  YFV    Y++SP+ A+ F   +
Sbjct: 193 EEAENERMHLMTFLEVTQPNWW-ERALVMAAQGVFVNAYFVG---YLVSPKFAHRFVGYL 248

Query: 217 ESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENL 275
           E  A  +Y +++K  +  K++  PAPA+AI Y+                   R P    L
Sbjct: 249 EEEAVHSYTEYLKDLEAGKIENTPAPAIAIDYW-------------------RLPADATL 289

Query: 276 YDVFLNIRDDEAEH 289
            DV   IR DEA H
Sbjct: 290 KDVVTVIRADEAHH 303


>gi|260436099|ref|ZP_05790069.1| plastoquinol oxidase [Synechococcus sp. WH 8109]
 gi|260413973|gb|EEX07269.1| plastoquinol oxidase [Synechococcus sp. WH 8109]
          Length = 211

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 15/194 (7%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKV---- 157
           L ES   +L  L+   D  R   LE IAR  Y A  S  H  E+ G  +     K     
Sbjct: 18  LIESGEQLLSLLWPAADARRAASLEIIARTAYTAEESACHYLETIGLDQSGAIRKTLELA 77

Query: 158 HFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVE 217
              +S  + H  +   +LGG + W DRF+A+H+AV  Y++     ++   +A    E VE
Sbjct: 78  RRQDSNEQTHEDIFSRDLGGLSLWIDRFVARHVAVLVYWIFALTTLLDHELASLLGEAVE 137

Query: 218 SHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTG-GDLYLFDEFQTARLPNSRRPKIENLY 276
           + A +TY + +  Q E   + P   +A  Y+   G+++       AR  + R P  E L 
Sbjct: 138 AEAVKTYRRMLLEQPEGWLQQPVTPIATAYWRKEGNMW------AAR--DEREP--ETLR 187

Query: 277 DVFLNIRDDEAEHC 290
           DV   I  DE +H 
Sbjct: 188 DVIELIARDELDHV 201


>gi|326521476|dbj|BAK00314.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 330

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 106/245 (43%), Gaps = 40/245 (16%)

Query: 57  EEEKVVVEESSPLKNF---PNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDAL 113
           E  K+V ++ +    F   P D   P+T    A           V   +  S+ +  D  
Sbjct: 87  EPRKLVKDDGTEWPWFCFRPWDTYRPDTSIGVAKHHEPRALPDKVAYFVVRSLRVPRDLF 146

Query: 114 YRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNEMHH 168
           ++ R  +   +LET+A VP      +LH+     +E  G W RA        E+ NE  H
Sbjct: 147 FQRRHASHALLLETVAAVPPMVGGVLLHLRSLRRFEHSGGWIRAL-----MEEAENERMH 201

Query: 169 LLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
           L+   E+    WW +R L   AQ +    YFV    Y+ISP+ A+ F   +E  A E+Y 
Sbjct: 202 LMTFMEVTQPRWW-ERALVLAAQGVFFNAYFVG---YLISPKFAHRFVGYLEEEAVESYT 257

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K  +   ++  PAPA+AI Y+              RLP   R     L DV   +R 
Sbjct: 258 EYLKDLEAGLIENTPAPAIAIDYW--------------RLPADAR-----LKDVVTAVRA 298

Query: 285 DEAEH 289
           DEA H
Sbjct: 299 DEAHH 303


>gi|125581850|gb|EAZ22781.1| hypothetical protein OsJ_06456 [Oryza sativa Japonica Group]
          Length = 404

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 31/186 (16%)

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWN 164
           +D  ++ R   R  +LET+A VP     +VLH+     +E  G W RA        E+ N
Sbjct: 217 VDLFFQRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRA-----LLEEAEN 271

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E  HL+   E+     W++R L   +  A++   +  Y++SPR A+     +E  A  +Y
Sbjct: 272 ERMHLMTFMEV-SQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSY 330

Query: 225 DKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
            +F++     K+  +PAPA+AI Y+                   R P    L DV + +R
Sbjct: 331 TEFLRDLDAGKIDDVPAPAIAIDYW-------------------RLPADATLRDVVMVVR 371

Query: 284 DDEAEH 289
            DEA H
Sbjct: 372 ADEAHH 377


>gi|125539183|gb|EAY85578.1| hypothetical protein OsI_06950 [Oryza sativa Indica Group]
          Length = 339

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 31/186 (16%)

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWN 164
           +D  ++ R   R  +LET+A VP     +VLH+     +E  G W RA        E+ N
Sbjct: 152 VDLFFQRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRA-----LLEEAEN 206

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E  HL+   E+     W++R L   +  A++   +  Y++SPR A+     +E  A  +Y
Sbjct: 207 ERMHLMTFMEV-SQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSY 265

Query: 225 DKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
            +F++     K+  +PAPA+AI Y+                   R P    L DV + +R
Sbjct: 266 TEFLRDLDAGKIDDVPAPAIAIDYW-------------------RLPADATLRDVVMVVR 306

Query: 284 DDEAEH 289
            DEA H
Sbjct: 307 ADEAHH 312


>gi|116784421|gb|ABK23336.1| unknown [Picea sitchensis]
          Length = 400

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 23/182 (12%)

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNE-MHH 168
           +D  ++ R   R  +LET+A VP      +LH      +   A ++K    E+ NE MH 
Sbjct: 213 VDLFFKKRYDIRVMMLETVAAVPGMVGGMLLHCKSLRKFQHSAGWIKALLEEAENERMHL 272

Query: 169 LLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
           +  ME    N  WF+R L   +   ++     +Y+ISP++A+     +E  A  +Y +F+
Sbjct: 273 MTFMEVTKPN--WFERALVFAVQGVFFNTYFLVYIISPKLAHRIVGYLEEEAVYSYTEFL 330

Query: 229 KA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
           K      +   PAPA+AI Y+                   R PK   L DV + +R DEA
Sbjct: 331 KELDNGNIPNGPAPAIAIDYW-------------------RLPKDSTLRDVVMVVRADEA 371

Query: 288 EH 289
            H
Sbjct: 372 HH 373


>gi|50251730|dbj|BAD27650.1| putative alternative oxidase 1 [Oryza sativa Japonica Group]
          Length = 339

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 31/186 (16%)

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWN 164
           +D  ++ R   R  +LET+A VP     +VLH+     +E  G W RA        E+ N
Sbjct: 152 VDLFFQRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRA-----LLEEAEN 206

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E  HL+   E+     W++R L   +  A++   +  Y++SPR A+     +E  A  +Y
Sbjct: 207 ERMHLMTFMEV-SQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSY 265

Query: 225 DKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
            +F++     K+  +PAPA+AI Y+                   R P    L DV + +R
Sbjct: 266 TEFLRDLDAGKIDDVPAPAIAIDYW-------------------RLPADATLRDVVMVVR 306

Query: 284 DDEAEH 289
            DEA H
Sbjct: 307 ADEAHH 312


>gi|226897261|dbj|BAH56639.1| alternative oxidase 1a [Nelumbo nucifera]
          Length = 344

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D L+++R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 158 DILFQNRYGCRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKTLLEEAENERMHLM 217

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISPR A+     +E  A  +Y +F+K 
Sbjct: 218 TFMEV-SQPKWYERALVVAVQGVFFNTYFLGYLISPRFAHRVVGYLEEEAIHSYTEFLKE 276

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+A+ Y+                   + P    L DV + +R DEA H
Sbjct: 277 LDKGNIQNVPAPAIAVDYW-------------------QLPPDSTLRDVVMVVRADEAHH 317


>gi|3913066|sp|Q40578.2|AOX2_TOBAC RecName: Full=Ubiquinol oxidase 2, mitochondrial; AltName:
           Full=Alternative oxidase 2; Flags: Precursor
          Length = 297

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 111 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 170

Query: 171 IMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
              E+     W++R   F  Q + +  YFVT   Y++SP++A+     +E  A  +Y +F
Sbjct: 171 TFMEVAKPN-WYERALVFAVQGVFINAYFVT---YLLSPKLAHRIVGYLEEEAIHSYTEF 226

Query: 228 IKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           +K   +  ++ +PAPA+AI Y+                   R PK   L DV L +R DE
Sbjct: 227 LKELDKGNIENVPAPAIAIDYW-------------------RLPKDSTLRDVVLVVRADE 267

Query: 287 AEH 289
           A H
Sbjct: 268 AHH 270


>gi|40036979|gb|AAR37364.1| mitochondrial alternative oxidase [Nicotiana attenuata]
          Length = 349

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 163 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 222

Query: 171 IMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
              E+    W ++R   F  Q +    YFVT   Y++SP++A+     +E  A  +Y +F
Sbjct: 223 TFMEVAKPNW-YERALVFAVQGVFFNAYFVT---YLVSPKLAHRIVGYLEEEAIHSYTEF 278

Query: 228 IKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           +K   +  ++ +PAPA+AI Y+                   R PK   L DV L +R DE
Sbjct: 279 LKELDKGNIENVPAPAIAIDYW-------------------RLPKDSTLRDVVLVVRADE 319

Query: 287 AEH 289
           A H
Sbjct: 320 AHH 322


>gi|357490777|ref|XP_003615676.1| Alternative oxidase [Medicago truncatula]
 gi|355517011|gb|AES98634.1| Alternative oxidase [Medicago truncatula]
          Length = 324

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 22/185 (11%)

Query: 107 IMVLDALY-RDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNE 165
           + VL  LY ++R      +LETIA VP      +LH+     +     ++K    E+ NE
Sbjct: 133 LRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHAGGWIKALLEEAENE 192

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+ M EL   + W +R L       ++      Y++SP++A+ F   +E  A  +Y 
Sbjct: 193 RMHLMTMVELVKPS-WHERLLVITAQGVFFNGFFVFYILSPKIAHRFVGYLEEEAVISYT 251

Query: 226 KFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++ A +  K++ +PAPA+AI Y+              RLPN        L DV   IR 
Sbjct: 252 QYLNAIESGKVENVPAPAIAIDYW--------------RLPND-----ATLKDVVTVIRA 292

Query: 285 DEAEH 289
           DEA H
Sbjct: 293 DEAHH 297


>gi|297851678|ref|XP_002893720.1| At1g32350/F5D14.4 [Arabidopsis lyrata subsp. lyrata]
 gi|297339562|gb|EFH69979.1| At1g32350/F5D14.4 [Arabidopsis lyrata subsp. lyrata]
          Length = 315

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 21/168 (12%)

Query: 123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
            +LET+A VP      +LH+     +     ++K    E+ NE  HL+   EL    W +
Sbjct: 141 MLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKW-Y 199

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAP 241
           +R +   +  A++      YVISP++A+  +  +E  A  +Y +F+K     K +  PAP
Sbjct: 200 ERAIVFTVQGAFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAP 259

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 260 AIAIDYW-------------------RLPKDATLRDVVYVIRADEAHH 288


>gi|357490753|ref|XP_003615664.1| Alternative oxidase [Medicago truncatula]
 gi|355516999|gb|AES98622.1| Alternative oxidase [Medicago truncatula]
          Length = 275

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  +++R      +LETIA VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 89  DLYFKERYGCHAMMLETIAAVPPMVGGMLLHLKSLRKFQHTGGWIKALLEEAENERMHLM 148

Query: 171 IMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
            M EL   + W +R L   AQ +    +FV    Y++SP+ A+ F   +E  A  +Y + 
Sbjct: 149 TMVELVKPS-WHERLLVITAQGVFFNAFFV---FYILSPKTAHRFVGYLEEEAVISYTQH 204

Query: 228 IKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           + A +  K++ +PAPA+AI Y+                   R PK   L DV   IR DE
Sbjct: 205 LNAIESGKVENVPAPAIAIDYW-------------------RLPKDATLKDVITVIRADE 245

Query: 287 AEH 289
           A H
Sbjct: 246 AHH 248


>gi|115460318|ref|NP_001053759.1| Os04g0600300 [Oryza sativa Japonica Group]
 gi|3218543|dbj|BAA28771.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|3218548|dbj|BAA28774.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|38345774|emb|CAE03472.2| OSJNBa0083N12.12 [Oryza sativa Japonica Group]
 gi|113565330|dbj|BAF15673.1| Os04g0600300 [Oryza sativa Japonica Group]
 gi|116310915|emb|CAH67853.1| B0403H10-OSIGBa0105A11.5 [Oryza sativa Indica Group]
 gi|125549593|gb|EAY95415.1| hypothetical protein OsI_17255 [Oryza sativa Indica Group]
 gi|125591518|gb|EAZ31868.1| hypothetical protein OsJ_16033 [Oryza sativa Japonica Group]
 gi|215741542|dbj|BAG98037.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 335

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 37/194 (19%)

Query: 105 SVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHF 159
           S+ +  D  ++ R  +   +LET+A VP      +LH+     +E  G W RA       
Sbjct: 143 SLAVPRDLFFQRRHASHALLLETVAGVPGMVGGMLLHLRSLRRFEQSGGWIRA-----LL 197

Query: 160 AESWNEMHHLLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECV 216
            E+ NE  HL+   E+    WW +R L   AQ +    YFV    Y++SP+ A+ F   +
Sbjct: 198 EEAENERMHLMTFLEVMQPRWW-ERALVLAAQGVFFNAYFVG---YLVSPKFAHRFVGYL 253

Query: 217 ESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENL 275
           E  A  +Y +++K  +  K++  PAPA+AI Y+                   R P    L
Sbjct: 254 EEEAVSSYTEYLKDLEAGKIENTPAPAIAIDYW-------------------RLPADATL 294

Query: 276 YDVFLNIRDDEAEH 289
            DV   IR DEA H
Sbjct: 295 KDVVTVIRADEAHH 308


>gi|155573899|gb|ABU24346.1| mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa]
 gi|155573901|gb|ABU24347.1| mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa]
          Length = 353

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 37/188 (19%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 167 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGW-----IKALLEEAENE 221

Query: 166 MHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
             HL+   E+    W ++R   F  Q +    YFVT   Y++SP++A+     +E  A  
Sbjct: 222 RMHLMTFMEVAKPNW-YERALVFAVQGVFFNAYFVT---YLLSPKLAHRIVGYLEEEAIH 277

Query: 223 TYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLN 281
           +Y +F+K   +  ++ +PAPA+AI Y+                   R PK   L DV L 
Sbjct: 278 SYTEFLKELDKGNIENVPAPAIAIDYW-------------------RLPKDSTLRDVVLV 318

Query: 282 IRDDEAEH 289
           +R DEA H
Sbjct: 319 VRADEAHH 326


>gi|117646985|dbj|BAF36564.1| alternative oxidase [Nicotiana tabacum]
          Length = 353

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 167 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENERMHLM 226

Query: 171 IMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
              E+    W ++R   F  Q +    YFVT   Y++SP++A+     +E  A  +Y +F
Sbjct: 227 TFMEVAKPNW-YERALVFAVQGVFFNAYFVT---YLLSPKLAHRIVGYLEEEAIHSYTEF 282

Query: 228 IKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           +K   +  ++ +PAPA+AI Y+                   R PK   L DV L +R DE
Sbjct: 283 LKELDKGNIENVPAPAIAIDYW-------------------RLPKDSTLRDVVLVVRADE 323

Query: 287 AEH 289
           A H
Sbjct: 324 AHH 326


>gi|633600|emb|CAA56163.1| alternative oxidase [Nicotiana tabacum]
          Length = 297

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 111 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 170

Query: 171 IMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
              E+     W++R   F  Q + +  YFVT   Y++SP++A      +E  A  +Y +F
Sbjct: 171 TFMEVAKPN-WYERALVFAVQGVFINAYFVT---YLLSPKLAXRIVGYLEEEAIHSYTEF 226

Query: 228 IKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           +K   +  ++ +PAPA+AI Y+                   R PK   L DV L +R DE
Sbjct: 227 LKELDKGNIENVPAPAIAIDYW-------------------RLPKDSTLRDVVLVVRADE 267

Query: 287 AEH 289
           A H
Sbjct: 268 AHH 270


>gi|357490779|ref|XP_003615677.1| Alternative oxidase [Medicago truncatula]
 gi|355517012|gb|AES98635.1| Alternative oxidase [Medicago truncatula]
          Length = 231

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 21/168 (12%)

Query: 123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
            +LETIA VP      +LH+     +     ++K    E+ NE  HL+ M EL   + W 
Sbjct: 57  MMLETIAAVPGMVGGMLLHLKSLRKFQHAGGWIKALLEEAENERMHLMTMVELVKPS-WH 115

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKLKKMPAP 241
           +R L       ++      Y++SP++A+ F   +E  A  +Y +++ A +  K++ +PAP
Sbjct: 116 ERLLVITAQGVFFNGFFVFYILSPKIAHRFVGYLEEEAVISYTQYLNAIESGKVENVPAP 175

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A+AI Y+              RLPN        L DV   IR DEA H
Sbjct: 176 AIAIDYW--------------RLPND-----ATLKDVVTVIRADEAHH 204


>gi|357165631|ref|XP_003580445.1| PREDICTED: alternative oxidase 1b, mitochondrial-like [Brachypodium
           distachyon]
          Length = 324

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R  +   +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 138 DLFFQRRHASHALLLETVAAVPPMVGGMLLHLRSLRRFEHSGGWIRA-----LMEEAENE 192

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+    WW +R L   +   ++      Y++SP+ A+ F   +E  A ++Y 
Sbjct: 193 RMHLMTFLEVTQPKWW-ERALVMAVQGVFFNAYFVGYLVSPKFAHRFVGYLEEEAVKSYT 251

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K  +  K++  PAPA+AI Y+                   R P    L DV   +R 
Sbjct: 252 EYLKDLEAGKIENTPAPAIAIDYW-------------------RLPADATLKDVVAVVRA 292

Query: 285 DEAEH 289
           DEA H
Sbjct: 293 DEAHH 297


>gi|3023316|sp|Q41224.1|AOX1_TOBAC RecName: Full=Ubiquinol oxidase 1, mitochondrial; AltName:
           Full=Alternative oxidase 1; Flags: Precursor
 gi|558054|gb|AAC60576.1| alternative oxidase [Nicotiana tabacum]
 gi|1090812|prf||2019465A Aox1 gene
          Length = 353

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 167 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENERMHLM 226

Query: 171 IMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
              E+    W ++R   F  Q +    YFVT   Y++SP++A+     +E  A  +Y +F
Sbjct: 227 TFMEVAKPNW-YERALVFAVQGVFFNAYFVT---YLLSPKLAHRIVGYLEEEAIHSYTEF 282

Query: 228 IKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           +K   +  ++ +PAPA+AI Y                    R PK   L DV L +R DE
Sbjct: 283 LKELDKGNIENVPAPAIAIDY-------------------CRLPKDSTLLDVVLVVRADE 323

Query: 287 AEH 289
           A H
Sbjct: 324 AHH 326


>gi|351728013|ref|NP_001238460.1| alternative oxidase 3, mitochondrial [Glycine max]
 gi|3023305|sp|O03376.1|AOX3_SOYBN RecName: Full=Alternative oxidase 3, mitochondrial; Flags:
           Precursor
 gi|1946338|gb|AAB97286.1| alternative oxidase 2b [Glycine max]
          Length = 326

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  +++R      +LETIA VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 140 DIYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 199

Query: 171 IMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
            M EL   + W +R L   AQ +    +FV    Y++SP+ A+ F   +E  A  +Y + 
Sbjct: 200 TMVELVKPS-WHERLLIFTAQGVFFNAFFV---FYLLSPKAAHRFVGYLEEEAVISYTQH 255

Query: 228 IKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           + A +  K++ +PAPA+AI Y+                   R PK   L DV   IR DE
Sbjct: 256 LNAIESGKVENVPAPAIAIDYW-------------------RLPKDATLKDVVTVIRADE 296

Query: 287 AEH 289
           A H
Sbjct: 297 AHH 299


>gi|32130598|gb|AAP68983.1| alternative oxidase 2b [Glycine max]
          Length = 326

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  +++R      +LETIA VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 140 DIYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 199

Query: 171 IMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
            M EL   + W +R L   AQ +    +FV    Y++SP+ A+ F   +E  A  +Y + 
Sbjct: 200 TMVELVKPS-WHERLLIFTAQGVFFNAFFV---FYLLSPKAAHRFVGYLEEEAVISYTQH 255

Query: 228 IKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           + A +  K++ +PAPA+AI Y+                   R PK   L DV   IR DE
Sbjct: 256 LNAIESGKVENVPAPAIAIDYW-------------------RLPKDATLKDVVTVIRADE 296

Query: 287 AEH 289
           A H
Sbjct: 297 AHH 299


>gi|19912725|dbj|BAB88645.1| alternative oxidase [Triticum aestivum]
          Length = 328

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 142 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRA-----LLEEAENE 196

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++    F Y+ISP+ A+     +E  A  +Y 
Sbjct: 197 RMHLMTFMEVA-QPRWYERALVIAVQGVFFNAYFFGYLISPKFAHRVVGYLEEEAVHSYT 255

Query: 226 KFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K   + K+  +PAPA+AI Y+                   R P    L DV   +R 
Sbjct: 256 EFLKDLDDGKIDNVPAPAIAIDYW-------------------RLPANATLKDVVTVVRA 296

Query: 285 DEAEH 289
           DEA H
Sbjct: 297 DEAHH 301


>gi|12597864|gb|AAG60173.1|AC084110_6 oxidase, putative [Arabidopsis thaliana]
          Length = 287

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 21/168 (12%)

Query: 123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
            +LET+A VP      +LH+     +     ++K    E+ NE  HL+   EL     W+
Sbjct: 113 MLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELS-QPKWY 171

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAP 241
           +R +   +   ++      YVISP++A+  +  +E  A  +Y +F+K     K +  PAP
Sbjct: 172 ERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAP 231

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 232 AIAIDYW-------------------RLPKDATLRDVVYVIRADEAHH 260


>gi|392375949|ref|YP_003207782.1| hypothetical protein DAMO_2910 [Candidatus Methylomirabilis
           oxyfera]
 gi|258593642|emb|CBE69983.1| conserved protein of unknown function [Candidatus Methylomirabilis
           oxyfera]
          Length = 222

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 13/151 (8%)

Query: 101 LLTESVIMVLDALY-RDRDYARFFVLETIARVPY-----FAFISVLHMYESFGWWRRA-D 153
           +L   + M +D +Y R +  ++F VLE IARVPY      A++++ HMY    + RR  D
Sbjct: 30  ILARLLFMTMDLVYGRRKTLSKFKVLELIARVPYQSWENVAYVAITHMYADREFSRRVFD 89

Query: 154 YLKVHFAESWNEMHHLLIMEELG-----GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
            +K       NEM HLLI+EEL        +++  R L Q IA  YY    F+YV+ P  
Sbjct: 90  RVKEAREAQDNEMWHLLILEELTHARGIKESFFLYRVLPQVIAFLYYHTCWFLYVVKPSW 149

Query: 209 AYHFSECVESHAFETYDKFIKAQGEKLKKMP 239
            Y  +   E HA   Y +F+ A+  +L+  P
Sbjct: 150 GYLLNAQFEDHAEHEYMEFV-AENPQLELEP 179


>gi|82468807|gb|ABB76768.1| alternative oxidase 1a [Solanum tuberosum]
          Length = 355

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 30/214 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNE-MHHL 169
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE MH +
Sbjct: 170 DVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 229

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
             ME    N   ++R L   +   ++      Y+ISP++A+     +E  A  +Y +F+K
Sbjct: 230 TFMEVAKPNV--YERALVFTVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVHSYTEFLK 287

Query: 230 A-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAE 288
                 ++ +PAPA+AI Y+                   R PK   L DV L +R DEA 
Sbjct: 288 ELDNGNIENVPAPAIAIDYW-------------------RLPKDATLRDVVLVVRADEAH 328

Query: 289 HCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCI 322
           H    +    + ++R   +Y  DD       GCI
Sbjct: 329 H----RDVNHYASVR---TYKADDLDLFGIDGCI 355


>gi|18398395|ref|NP_564395.1| alternative oxidase 3 [Arabidopsis thaliana]
 gi|85681032|sp|Q8LEE7.2|AOX3_ARATH RecName: Full=Ubiquinol oxidase 3, mitochondrial; AltName:
           Full=Alternative oxidase 3; Flags: Precursor
 gi|8920609|gb|AAF81331.1|AC007767_11 Strong similarity to alternative oxidase from Populus tremula x
           Populus tremuloides gb|AJ271889. It contains an
           alternative oxidase domain PF|01786 [Arabidopsis
           thaliana]
 gi|115311485|gb|ABI93923.1| At1g32350 [Arabidopsis thaliana]
 gi|332193346|gb|AEE31467.1| alternative oxidase 3 [Arabidopsis thaliana]
          Length = 318

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 21/168 (12%)

Query: 123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
            +LET+A VP      +LH+     +     ++K    E+ NE  HL+   EL    W +
Sbjct: 144 MLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKW-Y 202

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAP 241
           +R +   +   ++      YVISP++A+  +  +E  A  +Y +F+K     K +  PAP
Sbjct: 203 ERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAP 262

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 263 AIAIDYW-------------------RLPKDATLRDVVYVIRADEAHH 291


>gi|367023150|ref|XP_003660860.1| alternative oxidase [Myceliophthora thermophila ATCC 42464]
 gi|347008127|gb|AEO55615.1| alternative oxidase [Myceliophthora thermophila ATCC 42464]
          Length = 368

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 112/285 (39%), Gaps = 53/285 (18%)

Query: 38  SPRSLSRNFCRVQATILQD---EEEKVVVEESSP------------LKNFPNDDEPPETG 82
           +P    RNF   +   LQD    +E   +  + P            L   P   +P   G
Sbjct: 56  TPLPGRRNFSTTRVGQLQDVFPAKETPFIRRTPPAWEHPGYTEEELLAVTPGHRQPKTVG 115

Query: 83  SASA-----LEKWVIKF------EQSVNILLTESVIMVLDALYRDRDYARFFVLETIARV 131
              A     L +W   F      EQ V++    + +     L   +   R   LE+IA V
Sbjct: 116 DWVAWKLVRLARWATDFATGIGREQQVDMKNPTTSVTSQKPLTEAQWLVRIIFLESIAGV 175

Query: 132 PYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIA 191
           P      + H++      R   +++    ES+NE  HLL+   LG   W     +    A
Sbjct: 176 PGMVGGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLVALTLGKPGWLMKTMILG--A 233

Query: 192 VAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIKA-QGEKLKKMPAPA-----VA 244
              +F  +F+ Y+ISP++++ F   +E  A  TY + I+  +   L K   P+     +A
Sbjct: 234 QGVFFNAMFLSYLISPKISHRFVGYLEEEAVHTYTRLIREIENGDLPKWSDPSFTVPDIA 293

Query: 245 IKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           + Y+              R+P  +R     + D+FL IR DEA H
Sbjct: 294 VTYW--------------RMPEGKR----TMRDLFLYIRADEAVH 320


>gi|21553592|gb|AAM62685.1| oxidase, putative [Arabidopsis thaliana]
          Length = 318

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 21/168 (12%)

Query: 123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
            +LET+A VP      +LH+     +     ++K    E+ NE  HL+   EL    W +
Sbjct: 144 MLLETVAAVPGMVGWMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKW-Y 202

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAP 241
           +R +   +   ++      YVISP++A+  +  +E  A  +Y +F+K     K +  PAP
Sbjct: 203 ERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAP 262

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 263 AIAIDYW-------------------RLPKDATLRDVVYVIRADEAHH 291


>gi|116070947|ref|ZP_01468216.1| plastoquinol terminal oxidase [Synechococcus sp. BL107]
 gi|116066352|gb|EAU72109.1| plastoquinol terminal oxidase [Synechococcus sp. BL107]
          Length = 210

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 13/186 (6%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKV----HFAESWN 164
           +L+ ++   D  R   LE IAR  Y A  S  H  E+ G  R+    +      + ++  
Sbjct: 24  LLNVVWSKADARRAASLEIIARTAYTAEESACHYLETIGLDRKGSIRETLELARYQDTNE 83

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           + H  +   +L G   W DRFLA+HIAV  Y+      +I   +A    E VE  A  TY
Sbjct: 84  QTHEDIFARDLNGLKNWGDRFLARHIAVIIYWAFAITTLIDHELAALLGEAVEVEAVATY 143

Query: 225 DKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
            + +  Q ++    PA   A++Y+   +          ++    +P   ++ DV   I  
Sbjct: 144 KRMLVEQSDEWLNQPAVPTAVRYWNKPN-------SMWKVRGDNQPM--SMRDVVEAIVK 194

Query: 285 DEAEHC 290
           DEA+H 
Sbjct: 195 DEADHV 200


>gi|297599105|ref|NP_001046676.2| Os02g0318100 [Oryza sativa Japonica Group]
 gi|255670840|dbj|BAF08590.2| Os02g0318100 [Oryza sativa Japonica Group]
          Length = 192

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 31/175 (17%)

Query: 121 RFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175
           R  +LET+A VP     +VLH+     +E  G W RA        E+ NE  HL+   E+
Sbjct: 16  RAMMLETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRAL-----LEEAENERMHLMTFMEV 70

Query: 176 GGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEK 234
                W++R L   +  A++   +  Y++SPR A+     +E  A  +Y +F++     K
Sbjct: 71  S-QPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGK 129

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +  +PAPA+AI Y+                   R P    L DV + +R DEA H
Sbjct: 130 IDDVPAPAIAIDYW-------------------RLPADATLRDVVMVVRADEAHH 165


>gi|115460316|ref|NP_001053758.1| Os04g0600200 [Oryza sativa Japonica Group]
 gi|3218544|dbj|BAA28772.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|3218546|dbj|BAA28773.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|6467126|dbj|BAA86963.1| alternative oxidase [Oryza sativa (japonica cultivar-group)]
 gi|38345773|emb|CAD41813.2| OSJNBa0083N12.11 [Oryza sativa Japonica Group]
 gi|113565329|dbj|BAF15672.1| Os04g0600200 [Oryza sativa Japonica Group]
 gi|116310914|emb|CAH67852.1| B0403H10-OSIGBa0105A11.4 [Oryza sativa Indica Group]
 gi|125549592|gb|EAY95414.1| hypothetical protein OsI_17254 [Oryza sativa Indica Group]
 gi|125591517|gb|EAZ31867.1| hypothetical protein OsJ_16032 [Oryza sativa Japonica Group]
 gi|215693779|dbj|BAG88978.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 332

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     + +   +++    E+ NE  HL+
Sbjct: 146 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRTLLEEAENERMHLM 205

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
              E+  N  W++R L   +   ++      Y++SP+ A+     +E  A  +Y +F+K 
Sbjct: 206 TFMEV-ANPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKD 264

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +  K+  +PAPA+AI Y+                   R P    L DV   +R DEA H
Sbjct: 265 LEAGKIDNVPAPAIAIDYW-------------------RLPANATLKDVVTVVRADEAHH 305


>gi|17154769|emb|CAD12835.1| putative alternative oxidase [Vigna unguiculata]
 gi|70799005|gb|AAZ09195.1| mitochondrial alternative oxidase 2b [Vigna unguiculata]
          Length = 326

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 28/188 (14%)

Query: 107 IMVLDALY-RDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNE 165
           + VL  LY ++R      +LETIA VP      +LH+     +     ++K    E+ NE
Sbjct: 135 LRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENE 194

Query: 166 MHHLLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
             HL+ M EL     W +R L   AQ +    +FV    Y++SP+ A+ F   +E  A  
Sbjct: 195 RMHLMTMVEL-VQPKWHERLLIFTAQGVFFNAFFV---FYLLSPKAAHRFVGYLEEEAVI 250

Query: 223 TYDKFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLN 281
           +Y + ++A +  K++ +PAPA+AI Y+                   R PK   L DV   
Sbjct: 251 SYTQHLEAIESGKVENVPAPAIAIDYW-------------------RLPKDATLKDVVTV 291

Query: 282 IRDDEAEH 289
           IR DEA H
Sbjct: 292 IRADEAHH 299


>gi|51860695|gb|AAU11467.1| mitochondrial alternative oxidase 1 [Saccharum officinarum]
          Length = 331

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 145 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRA-----LLEEAENE 199

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 200 RMHLMTFMEV-AKPRWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 258

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K  +  K++ +PAPA+AI Y+                   R P    L DV   +R 
Sbjct: 259 EYLKDVEAGKIENVPAPAIAIDYW-------------------RLPANATLKDVVTVVRA 299

Query: 285 DEAEH 289
           DEA H
Sbjct: 300 DEAHH 304


>gi|14599480|gb|AAK70938.1| alternative oxidase 2 [Mangifera indica]
          Length = 144

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 21/164 (12%)

Query: 125 LETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR 184
           LET+A VP      +LH+       +   ++K    E+ NE  HL+ M EL     W++R
Sbjct: 1   LETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENERMHLMTMVELV-QPKWYER 59

Query: 185 FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAV 243
            L   +   ++     +YV+SP++A+     +E  A  +Y +++K      +K +PAPA+
Sbjct: 60  LLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTEYLKDIDSGAIKNIPAPAI 119

Query: 244 AIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
           AI Y+                   R PK   L DV   +R DEA
Sbjct: 120 AIDYW-------------------RLPKDATLKDVITVVRADEA 144


>gi|357165610|ref|XP_003580438.1| PREDICTED: alternative oxidase 1a, mitochondrial-like [Brachypodium
           distachyon]
          Length = 333

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 147 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRA-----LLEEAENE 201

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++    F Y+ISP+ A+     +E  A  +Y 
Sbjct: 202 RMHLMTFMEVA-QPRWYERALVIAVQGVFFNAYFFGYLISPKFAHRVVGYLEEEAVHSYT 260

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K  +  K+  +PAP++AI Y+                   R P    L DV   +R 
Sbjct: 261 EFLKDLEAGKIDDVPAPSIAIDYW-------------------RLPANATLKDVVTVVRA 301

Query: 285 DEAEH 289
           DEA H
Sbjct: 302 DEAHH 306


>gi|52421172|dbj|BAD51467.1| alternative oxidase [Philodendron bipinnatifidum]
          Length = 345

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W     +K    E+ NE
Sbjct: 159 DIFFQRRYACRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGW-----IKALLEEAENE 213

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 214 RMHLMTFMEV-SQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 272

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K      +K +PAPA+A+ Y+                   R P+   L DV + IR 
Sbjct: 273 EFLKDIDRGAIKNVPAPAIALDYW-------------------RLPQGSTLRDVVMVIRA 313

Query: 285 DEAEH 289
           DEA H
Sbjct: 314 DEAHH 318


>gi|19912727|dbj|BAB88646.1| alternative oxidase [Triticum aestivum]
          Length = 347

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 31/193 (16%)

Query: 103 TESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKV 157
            +S+ +  D  ++ R   R  +LET+A VP      +LH+     +E  G W RA     
Sbjct: 153 VKSLRVPTDIFFQRRYGCRAMMLETVAAVPGMVDGMLLHLRSLRRFEQSGGWIRA----- 207

Query: 158 HFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVE 217
              E+ NE  HL+   E+  N  W++R L   +   ++      Y++SP+ A+     +E
Sbjct: 208 LLEEAENERMHLMTFMEV-ANPKWYERALVLAVQGVFFNAYFLGYIVSPKFAHRVVGYLE 266

Query: 218 SHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLY 276
             A  +Y +F++  +  +++ +PAP +AI Y+              RLP   R     L 
Sbjct: 267 EEAIHSYTEFLRDLEAGRIENVPAPRIAIDYW--------------RLPADAR-----LK 307

Query: 277 DVFLNIRDDEAEH 289
           DV   +R DEA H
Sbjct: 308 DVVTVVRADEAHH 320


>gi|400530644|gb|AFP86473.1| mitochondrial alternative oxidase [Brassica rapa subsp. chinensis]
          Length = 427

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 174 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 233

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 234 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 292

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   R P    L DV + +R DEA H
Sbjct: 293 LDKGNIENVPAPAIAIDYW-------------------RLPADATLRDVVMVVRADEAHH 333


>gi|57157824|dbj|BAD83866.1| skunk cabbage alternative oxidase [Symplocarpus renifolius]
          Length = 349

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 163 DVFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTLLNEAENERMHLM 222

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +FIK 
Sbjct: 223 TFMEV-SEPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFIKE 281

Query: 231 -QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ +PAPA+A+ Y+                   R P+   L DV + +R DEA H
Sbjct: 282 IDNGTIENVPAPAIALDYW-------------------RLPQGSTLRDVVMVVRADEAHH 322


>gi|224118194|ref|XP_002317754.1| predicted protein [Populus trichocarpa]
 gi|222858427|gb|EEE95974.1| predicted protein [Populus trichocarpa]
          Length = 336

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+  N  W++R L   +   ++      Y+ISP+ A+     +E  A  +Y 
Sbjct: 205 RMHLMTFMEV-ANPRWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263

Query: 226 KFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K   +  +K +PAPA+AI Y+                   R P    L DV   +R 
Sbjct: 264 EFLKELDKGNIKNVPAPAIAIDYW-------------------RLPPNSTLRDVVEVVRA 304

Query: 285 DEAEH 289
           DEA H
Sbjct: 305 DEAHH 309


>gi|162462512|ref|NP_001105180.1| alternative oxidase1 [Zea mays]
 gi|25989199|gb|AAL27796.1| alternative oxidase AOX2 precursor [Zea mays]
 gi|39984776|gb|AAR36136.1| alternative oxidase 1a [Zea mays]
 gi|194707372|gb|ACF87770.1| unknown [Zea mays]
 gi|414585627|tpg|DAA36198.1| TPA: alternative oxidase [Zea mays]
          Length = 329

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 143 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRA-----LLEEAENE 197

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 198 RMHLMTFMEV-AKPRWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 256

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K  +  K++ +PAPA+AI Y+                   R P    L DV   +R 
Sbjct: 257 EYLKDLEAGKIENVPAPAIAIDYW-------------------RLPANATLKDVVTVVRA 297

Query: 285 DEAEH 289
           DEA H
Sbjct: 298 DEAHH 302


>gi|312282139|dbj|BAJ33935.1| unnamed protein product [Thellungiella halophila]
          Length = 357

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 171 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 230

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 231 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 289

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   R P    L DV + +R DEA H
Sbjct: 290 LDKGNIENVPAPAIAIDYW-------------------RLPADATLRDVVMVVRADEAHH 330


>gi|195637742|gb|ACG38339.1| transposon protein [Zea mays]
          Length = 329

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 143 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRA-----LLEEAENE 197

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 198 RMHLMTFMEV-AKPRWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 256

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K  +  K++ +PAPA+AI Y+                   R P    L DV   +R 
Sbjct: 257 EYLKDLEAGKIENVPAPAIAIDYW-------------------RLPANATLKDVVTVVRA 297

Query: 285 DEAEH 289
           DEA H
Sbjct: 298 DEAHH 302


>gi|269784500|dbj|BAI49704.1| alternative oxidase [Lysichiton camtschatcensis]
          Length = 352

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 166 DVFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTLLEEAENERMHLM 225

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +F+K 
Sbjct: 226 TFMEV-SQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKE 284

Query: 231 -QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ +PAPA+A+ Y+                   R P+   L DV + +R DEA H
Sbjct: 285 IDNGTIENVPAPAIALDYW-------------------RLPQGSTLRDVVMVVRADEAHH 325


>gi|162462383|ref|NP_001105179.1| alternative oxidase AOX1 precursor [Zea mays]
 gi|25989197|gb|AAL27795.1| alternative oxidase AOX1 precursor [Zea mays]
 gi|194690594|gb|ACF79381.1| unknown [Zea mays]
 gi|194703950|gb|ACF86059.1| unknown [Zea mays]
 gi|223974129|gb|ACN31252.1| unknown [Zea mays]
 gi|238011470|gb|ACR36770.1| unknown [Zea mays]
 gi|413938400|gb|AFW72951.1| hypothetical protein ZEAMMB73_439635 [Zea mays]
          Length = 347

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 161 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRA-----LLEEAENE 215

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y 
Sbjct: 216 RMHLMTFMEVAKPK-WYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYT 274

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K  +  K++ +PAPA+AI Y+                   + P    L DV + +R 
Sbjct: 275 EYLKDLEAGKIENVPAPAIAIDYW-------------------QLPADATLKDVVVVVRS 315

Query: 285 DEAEH 289
           DEA H
Sbjct: 316 DEAHH 320


>gi|5802557|gb|AAD51707.1| alternative oxidase [Triticum aestivum]
          Length = 274

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 88  DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRA-----LLEEAENE 142

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++    F Y+ISP+ A+     +E  A  +Y 
Sbjct: 143 RMHLMTFMEVA-QPRWYERALVIAVQGVFFNAYFFGYLISPKFAHRVVGYLEEEAVHSYT 201

Query: 226 KFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K   + K+  +PAPA+AI Y+                   R P    L DV   +R 
Sbjct: 202 EFLKDLDDGKIDNVPAPAIAIDYW-------------------RLPANATLKDVVTVVRA 242

Query: 285 DEAEH 289
           DEA H
Sbjct: 243 DEAHH 247


>gi|78184016|ref|YP_376451.1| plastoquinol terminal oxidase [Synechococcus sp. CC9902]
 gi|78168310|gb|ABB25407.1| plastoquinol terminal oxidase [Synechococcus sp. CC9902]
          Length = 207

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRA---DYLKVHFAESWNE 165
           +L+  + + D  R   LE IAR  Y A  S  H  E+ G  R+    + L++   +  NE
Sbjct: 21  LLNIFWYEADERRAASLEIIARTAYTAEESACHYLETIGLDRQGRIRETLELARYQDTNE 80

Query: 166 M-HHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
             H  +   +L G   W DRFLA+HIAV  Y+V     +I   +A    E VE  A +TY
Sbjct: 81  QTHEDIFARDLNGLKNWGDRFLARHIAVIIYWVFAITTLIDHELAALLGEAVEVEAVKTY 140

Query: 225 DKFIKAQGEKLKKMPAPAVAIKYY 248
            + +  Q ++    PA   A++Y+
Sbjct: 141 RRMLVEQSDEWLNQPAVPTALRYW 164


>gi|90959751|dbj|BAE92716.1| Alternative Oxidase [Solanum tuberosum]
          Length = 337

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 23/188 (12%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNE-MHHL 169
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE MH +
Sbjct: 170 DVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 229

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
             ME    N   ++R L   +   ++      Y+ISP++A+     +E  A  +Y +F+K
Sbjct: 230 TFMEVAKPNV--YERALVFAVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVHSYTEFLK 287

Query: 230 A-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAE 288
                 ++ +PAPA+AI Y+                   R PK   L DV L +R DEA 
Sbjct: 288 ELDNGNIENVPAPAIAIDYW-------------------RLPKDATLRDVVLVVRADEAH 328

Query: 289 HCKTMKAC 296
           H +    C
Sbjct: 329 HRECQPLC 336


>gi|224118198|ref|XP_002317755.1| predicted protein [Populus trichocarpa]
 gi|222858428|gb|EEE95975.1| predicted protein [Populus trichocarpa]
          Length = 253

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 67  DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCRSLRRFEHSGGW-----IKALLEEAENE 121

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+  N  W++R L   +   ++      Y+ISP+ A+     +E  A  +Y 
Sbjct: 122 RMHLMTFMEV-SNPRWYERALVFTVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 180

Query: 226 KFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K   +  +K +PAPA+AI Y+                   R P    L DV + +R 
Sbjct: 181 EFLKELDKGNIKNVPAPAIAIDYW-------------------RLPPNSTLRDVVVAVRA 221

Query: 285 DEAEH 289
           DEA H
Sbjct: 222 DEAHH 226


>gi|242062814|ref|XP_002452696.1| hypothetical protein SORBIDRAFT_04g030820 [Sorghum bicolor]
 gi|241932527|gb|EES05672.1| hypothetical protein SORBIDRAFT_04g030820 [Sorghum bicolor]
          Length = 346

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 160 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRA-----LLEEAENE 214

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y 
Sbjct: 215 RMHLMTFMEVAKPK-WYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYT 273

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K  +  K++ +PAPA+AI Y+                   + P    L DV + +R 
Sbjct: 274 EYLKDLEAGKIENVPAPAIAIDYW-------------------QLPADATLKDVVVVVRS 314

Query: 285 DEAEH 289
           DEA H
Sbjct: 315 DEAHH 319


>gi|308153040|dbj|BAJ22109.1| alternative oxidase 1b [Arum maculatum]
          Length = 346

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 21/197 (10%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRAD 153
           F   + +   +S+    D  ++ R   R  +LET+A VP      +LH+     +     
Sbjct: 143 FLDKMALWTVKSLRWPTDIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGG 202

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
           ++K    E+ NE  HL+   E+     W++R L   +   ++      Y+ISP+ A+   
Sbjct: 203 WIKTLLEEAENERMHLMTFMEV-SQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVV 261

Query: 214 ECVESHAFETYDKFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272
             +E  A  +Y +F+K      ++ +PAPA+A+ Y+                   R P  
Sbjct: 262 GYLEEEAIHSYTEFLKEIDKGTIENVPAPAIALDYW-------------------RLPPG 302

Query: 273 ENLYDVFLNIRDDEAEH 289
             L DV + +R DEA H
Sbjct: 303 STLRDVVMVVRADEAHH 319


>gi|291245408|gb|ADD84881.1| mitochondrial AOX1A [Citrullus lanatus]
          Length = 315

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 142 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 201

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 202 TFMEVAKPK-WYERALVITVQGVFFSAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 260

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   R P    L DV + +R DEA H
Sbjct: 261 LDKGNIENVPAPAIAIDYW-------------------RLPADATLRDVVMVVRADEAHH 301


>gi|242077036|ref|XP_002448454.1| hypothetical protein SORBIDRAFT_06g027420 [Sorghum bicolor]
 gi|241939637|gb|EES12782.1| hypothetical protein SORBIDRAFT_06g027420 [Sorghum bicolor]
          Length = 314

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 37/197 (18%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLK 156
           L +S+I+     ++ R  +   +LET+A VP      +LH+     +E  G W RA    
Sbjct: 119 LVKSLIVPKQLFFQRRHASHALLLETVAAVPGMVGGMLLHLGSLRRFEHSGGWIRAL--- 175

Query: 157 VHFAESWNEMHHLLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFS 213
               E+ NE  HL+   E+    WW +R L   AQ +    YFV    Y+ SP+ A+ F 
Sbjct: 176 --LEEAENERMHLMTFLEVAQPKWW-ERALVLAAQGVFFNAYFVA---YLASPKFAHRFV 229

Query: 214 ECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272
             +E  A  +Y +++K  +   ++  PAPA+AI Y+                   R P  
Sbjct: 230 GYLEEEAVHSYTEYLKDLEAGVIENTPAPAIAIDYW-------------------RLPAD 270

Query: 273 ENLYDVFLNIRDDEAEH 289
             L DV   +R DEA H
Sbjct: 271 AKLKDVVTVVRADEAHH 287


>gi|327554104|gb|AEB00555.1| mitochondrial alternative oxidase 1a [Brassica juncea]
          Length = 360

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 174 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 233

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 234 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 292

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   R P    L DV + +R DEA H
Sbjct: 293 LDKGNIENVPAPAIAIDYW-------------------RLPADATLRDVVMVVRADEAHH 333


>gi|414585625|tpg|DAA36196.1| TPA: hypothetical protein ZEAMMB73_161603 [Zea mays]
          Length = 332

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 37/198 (18%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYL 155
           L+ +S+ + +D  ++ R  +   +LET+A VP      +LH+     +E  G W RA   
Sbjct: 136 LIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRAL-- 193

Query: 156 KVHFAESWNEMHHLLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHF 212
                E+ NE  HL+   E+    WW +R L   AQ +    YFV    Y++SP+ A+  
Sbjct: 194 ---LEEAENERMHLMTFLEVTQPRWW-ERALVLTAQGVFFNAYFVG---YLLSPKFAHRV 246

Query: 213 SECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPK 271
              +E  A  +Y +++K  +   +   PAPA+AI Y+                   R P 
Sbjct: 247 VGYLEEEAVHSYTEYLKDLEAGIIDNTPAPAIAIDYW-------------------RLPA 287

Query: 272 IENLYDVFLNIRDDEAEH 289
              L DV   +R DEA H
Sbjct: 288 DAKLKDVVTVVRADEAHH 305


>gi|294463331|gb|ADE77201.1| unknown [Picea sitchensis]
          Length = 175

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 21/168 (12%)

Query: 123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
            +LET+A VP      +LH      +   A ++K    E+ NE  HL+   E+     W+
Sbjct: 1   MMLETVAAVPGMVGGMLLHCKSLRKFQHSAGWIKALLEEAENERMHLMTFMEVA-QPKWY 59

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAP 241
           ++ L   +   ++     MY+ SP++A+     +E  A  +Y +FIK   +  +  +PAP
Sbjct: 60  EKALVFTVQGVFFNAYFLMYIFSPKLAHRIVGYLEEEAIHSYTEFIKELDKGTIPNVPAP 119

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A+AI Y+                   R PK   L DV L +R DEA H
Sbjct: 120 AIAIDYW-------------------RLPKDSTLRDVVLVVRADEAHH 148


>gi|225427478|ref|XP_002262811.1| PREDICTED: alternative oxidase 1a, mitochondrial [Vitis vinifera]
 gi|296088484|emb|CBI37475.3| unnamed protein product [Vitis vinifera]
          Length = 320

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 39/189 (20%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     ++V   E+ NE
Sbjct: 134 DIFFKRRFEMRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IRVLLEEAENE 188

Query: 166 MHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
             HL+   E+     W++R   F  Q I   +YFV    YVISP++A+     +E  A  
Sbjct: 189 RMHLMTFMEVA-KPRWYERALVFAVQGIFWNFYFVA---YVISPKVAHRAVGYLEEEAIH 244

Query: 223 TYDKFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARL-PNSRRPKIENLYDVFL 280
           +Y++FIK      +  +PAPA+AI Y+              RL P+S       L DV +
Sbjct: 245 SYNEFIKELDSGNIPNVPAPAIAIDYW--------------RLAPDS------TLRDVVM 284

Query: 281 NIRDDEAEH 289
            +R DEA H
Sbjct: 285 VVRADEAHH 293


>gi|15228734|ref|NP_188876.1| alternative oxidase 1A [Arabidopsis thaliana]
 gi|3915639|sp|Q39219.2|AOX1A_ARATH RecName: Full=Ubiquinol oxidase 1a, mitochondrial; AltName:
           Full=Alternative oxidase 1a; Flags: Precursor
 gi|13877807|gb|AAK43981.1|AF370166_1 putative alternative oxidase 1a precursor [Arabidopsis thaliana]
 gi|2506083|dbj|BAA22625.1| alternative oxidase [Arabidopsis thaliana]
 gi|9293872|dbj|BAB01775.1| alternative oxidase 1a precursor [Arabidopsis thaliana]
 gi|16323480|gb|AAL15234.1| putative alternative oxidase 1a precursor [Arabidopsis thaliana]
 gi|332643106|gb|AEE76627.1| alternative oxidase 1A [Arabidopsis thaliana]
          Length = 354

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 168 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 227

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 228 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 286

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   R P    L DV + +R DEA H
Sbjct: 287 LDKGNIENVPAPAIAIDYW-------------------RLPADATLRDVVMVVRADEAHH 327


>gi|115448119|ref|NP_001047839.1| Os02g0700400 [Oryza sativa Japonica Group]
 gi|16902306|dbj|BAB71944.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|16902308|dbj|BAB71945.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|41052670|dbj|BAD07517.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|41052978|dbj|BAD07888.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|113537370|dbj|BAF09753.1| Os02g0700400 [Oryza sativa Japonica Group]
 gi|125540792|gb|EAY87187.1| hypothetical protein OsI_08589 [Oryza sativa Indica Group]
          Length = 345

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 159 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRA-----LLEEAENE 213

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y++SP++A+     +E  A  +Y 
Sbjct: 214 RMHLMTFMEV-AKPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYT 272

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K  +  K++ +PAP +AI Y+                   R P    L DV + +R 
Sbjct: 273 EYLKDIEAGKIENVPAPPIAIDYW-------------------RLPAGATLKDVVVVVRA 313

Query: 285 DEAEH 289
           DEA H
Sbjct: 314 DEAHH 318


>gi|297830954|ref|XP_002883359.1| hypothetical protein ARALYDRAFT_479749 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329199|gb|EFH59618.1| hypothetical protein ARALYDRAFT_479749 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 354

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 168 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 227

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 228 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 286

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   R P    L DV + +R DEA H
Sbjct: 287 LDKGNIENVPAPAIAIDYW-------------------RLPADATLRDVVIVVRADEAHH 327


>gi|308153038|dbj|BAJ22108.1| alternative oxidase 1a [Arum maculatum]
          Length = 347

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 161 DIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTLLEEAENERMHLM 220

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 221 TFMEV-SQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTEFLKE 279

Query: 231 -QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ +PAPA+A+ Y+                   R P    L DV + +R DEA H
Sbjct: 280 IDKGTIENVPAPAIALDYW-------------------RLPPGSTLRDVVMVVRADEAHH 320


>gi|344190170|gb|AEM97867.1| mitochondrial alternative oxidase 1A [Corylus heterophylla]
          Length = 326

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 140 DIFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSGGWIKALLEEAENERMHLM 199

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++      Y++SP++A+     +E  A  +Y +++K 
Sbjct: 200 TMVELVKPK-WYERLLVLTVQGVFFNAYFIAYLLSPKLAHRIVGYLEEEAIHSYTEYLKD 258

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ + APA+AI Y+                   + PK   L DV   IR DEA H
Sbjct: 259 ITSGAIENVQAPAIAIDYW-------------------KLPKDATLEDVVTVIRADEAHH 299


>gi|297797435|ref|XP_002866602.1| hypothetical protein ARALYDRAFT_496620 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312437|gb|EFH42861.1| hypothetical protein ARALYDRAFT_496620 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 355

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 22/167 (13%)

Query: 124 VLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 183
           +LET+A VP      +LH+     +     ++K    E+ NE  HL+ M EL     W++
Sbjct: 183 MLETVAAVPGMVGGMLLHLKSIRKFEHSGSWIKALLEEAENERMHLMTMMELVKPK-WYE 241

Query: 184 RFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPA 242
           R L   +    +   +  YV+SPR+A+     +E  A  +Y +F+K     K++ + APA
Sbjct: 242 RLLVM-LVQGIFNSFLVCYVMSPRLAHRVVGYLEEEAIHSYTEFLKDIDDGKIENVAAPA 300

Query: 243 VAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +AI Y+                   R PK   L DV   IR DEA H
Sbjct: 301 IAIDYW-------------------RLPKDATLKDVVTVIRADEAHH 328


>gi|4006943|emb|CAA10364.1| alternative oxidase [Arabidopsis thaliana]
          Length = 353

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 167 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 226

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 227 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 285

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   R P    L DV + +R DEA H
Sbjct: 286 LDKGNIENVPAPAIAIDYW-------------------RLPADATLRDVVMVVRADEAHH 326


>gi|308153042|dbj|BAJ22110.1| alternative oxidase 1c [Arum maculatum]
          Length = 343

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W     +K    E+ NE
Sbjct: 157 DIFFQRRYACRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGW-----IKTLLEEAENE 211

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y 
Sbjct: 212 RMHLMTFMEV-SQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYT 270

Query: 226 KFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K      ++ +PAPA+A+ Y+                   R P    L DV + +R 
Sbjct: 271 EFLKEIDKGTIENVPAPAIALDYW-------------------RLPPGSTLRDVVMVVRA 311

Query: 285 DEAEH 289
           DEA H
Sbjct: 312 DEAHH 316


>gi|414585624|tpg|DAA36195.1| TPA: alternative oxidase [Zea mays]
          Length = 332

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 37/198 (18%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYL 155
           L+ +S+ + +D  ++ R  +   +LET+A VP      +LH+     +E  G W RA   
Sbjct: 136 LIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRAL-- 193

Query: 156 KVHFAESWNEMHHLLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHF 212
                E+ NE  HL+   E+    WW +R L   AQ +    YFV    Y++SP+ A+  
Sbjct: 194 ---LEEAENERMHLMTFLEVTQPRWW-ERALVLTAQGVFFNAYFVG---YLLSPKFAHRV 246

Query: 213 SECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPK 271
              +E  A  +Y +++K  +   +   PAPA+AI Y+                   R P 
Sbjct: 247 VGYLEEEAVHSYTEYLKDLEAGIIDNTPAPAIAIDYW-------------------RLPA 287

Query: 272 IENLYDVFLNIRDDEAEH 289
              L DV   +R DEA H
Sbjct: 288 DAKLKDVVTVVRADEAHH 305


>gi|308153048|dbj|BAJ22113.1| alternative oxidase 1f [Arum maculatum]
          Length = 343

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 21/197 (10%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRAD 153
           F   + +   +S+    D  ++ R   R  +LET+A VP      +LH+     +     
Sbjct: 140 FLDKMALWTVKSLRWPTDIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGG 199

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
           ++K    E+ NE  HL+   E+     W++R L   +   ++      Y+ISP+ A+   
Sbjct: 200 WIKTLLEEAENERMHLMTFMEV-SQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVV 258

Query: 214 ECVESHAFETYDKFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272
             +E  A  +Y +F+K      ++ +PAPA+A+ Y+                   R P  
Sbjct: 259 GYLEEEAIHSYTEFLKEIDKGTIENVPAPAIALDYW-------------------RLPPG 299

Query: 273 ENLYDVFLNIRDDEAEH 289
             L DV + +R DEA H
Sbjct: 300 STLRDVVMVVRADEAHH 316


>gi|52421168|dbj|BAD51465.1| alternative oxidase [Dracunculus vulgaris]
          Length = 338

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      VLH+     +E  G W RA        E+ NE
Sbjct: 152 DIFFQRRYACRAMMLETVAAVPGMVGGVVLHLKSLRRFEHSGGWIRA-----LLEEAENE 206

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 207 RMHLMTFMEV-AQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 265

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K  +   ++  PAPA+A+ Y+                   R P+   L DV   +R 
Sbjct: 266 EFLKDIESGVIQDSPAPAIALDYW-------------------RLPQGSTLRDVVTVVRA 306

Query: 285 DEAEH 289
           DEA H
Sbjct: 307 DEAHH 311


>gi|326519218|dbj|BAJ96608.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 324

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 31/198 (15%)

Query: 98  VNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRA 152
           V  L+  ++    D  ++ R  +   +LET+A VP      +LH+     +E  G W RA
Sbjct: 125 VAYLIVRTLRAGSDLFFQRRHASHALLLETVAAVPPMVGGVLLHLRSLRRFEHSGGWIRA 184

Query: 153 DYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHF 212
                   E+ NE  HL+   E+    WW +R L       ++      Y++SP+ A+ F
Sbjct: 185 L-----MEEAENERMHLMTFMEVTQPLWW-ERALVLATQGVFFNAYFVGYLVSPKFAHRF 238

Query: 213 SECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPK 271
              +E  A  +Y +++K  +   ++  PAPA+AI Y+              RLP   R  
Sbjct: 239 VGYLEEEAVHSYTEYLKDLEAGLIENTPAPAIAIDYW--------------RLPADAR-- 282

Query: 272 IENLYDVFLNIRDDEAEH 289
              L DV   +R DEA H
Sbjct: 283 ---LKDVVTAVRADEAHH 297


>gi|20467245|gb|AAM22475.1|AF502293_1 alternative oxidase [Cryptococcus neoformans var. grubii]
          Length = 401

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 71/173 (41%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R  +LE+IA VP     ++ H+       R   ++     E+ NE  HLL    +     
Sbjct: 186 RIILLESIAGVPGMVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIA-QPG 244

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL----K 236
            F R L       +Y      Y+ISPR+A+ F   +E  A  TY   I      L    K
Sbjct: 245 IFTRALVLAAQGVFYNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWK 304

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            MPAPA+AI Y+              RLP S      +L DV   +R DEA H
Sbjct: 305 DMPAPAIAIDYW--------------RLPAS-----SSLLDVIRAVRADEATH 338


>gi|166876|gb|AAA32870.1| oxidase [Arabidopsis thaliana]
          Length = 305

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 119 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 178

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 179 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 237

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   R P    L DV + +R DEA H
Sbjct: 238 LDKGNIENVPAPAIAIDYW-------------------RLPADATLRDVVMVVRADEAHH 278


>gi|58258419|ref|XP_566622.1| alternative oxidase 1 [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134106269|ref|XP_778145.1| hypothetical protein CNBA1450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260848|gb|EAL23498.1| hypothetical protein CNBA1450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57222759|gb|AAW40803.1| alternative oxidase 1 [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 401

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 71/173 (41%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R  +LE+IA VP     ++ H+       R   ++     E+ NE  HLL    +     
Sbjct: 186 RIILLESIAGVPGMVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIA-QPG 244

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL----K 236
            F R L       +Y      Y+ISPR+A+ F   +E  A  TY   I      L    K
Sbjct: 245 IFTRALVLAAQGVFYNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWK 304

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            MPAPA+AI Y+              RLP S      +L DV   +R DEA H
Sbjct: 305 DMPAPAIAIDYW--------------RLPAS-----SSLLDVIRAVRADEATH 338


>gi|242077034|ref|XP_002448453.1| hypothetical protein SORBIDRAFT_06g027410 [Sorghum bicolor]
 gi|241939636|gb|EES12781.1| hypothetical protein SORBIDRAFT_06g027410 [Sorghum bicolor]
          Length = 331

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 145 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRA-----LLEEAENE 199

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 200 RMHLMTFMEV-AKPRWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 258

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K  +  K++ +PAP++AI Y+                   R P    L DV   +R 
Sbjct: 259 EYLKDLEAGKIENVPAPSIAIDYW-------------------RLPANATLKDVVTVVRA 299

Query: 285 DEAEH 289
           DEA H
Sbjct: 300 DEAHH 304


>gi|449081284|sp|Q8NKE2.2|AOX_CRYNH RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|405117524|gb|AFR92299.1| alternative oxidase [Cryptococcus neoformans var. grubii H99]
          Length = 401

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 71/173 (41%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R  +LE+IA VP     ++ H+       R   ++     E+ NE  HLL    +     
Sbjct: 186 RIILLESIAGVPGMVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIA-QPG 244

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL----K 236
            F R L       +Y      Y+ISPR+A+ F   +E  A  TY   I      L    K
Sbjct: 245 IFTRALVLAAQGVFYNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWK 304

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            MPAPA+AI Y+              RLP S      +L DV   +R DEA H
Sbjct: 305 DMPAPAIAIDYW--------------RLPAS-----SSLLDVIRAVRADEATH 338


>gi|388501212|gb|AFK38672.1| unknown [Lotus japonicus]
          Length = 314

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 24/186 (12%)

Query: 107 IMVLDALY-RDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNE 165
           + VL  LY ++R      +LETIA VP      +LH+     +     ++K    E+ NE
Sbjct: 123 LRVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENE 182

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+ M EL   + W +R L       ++      Y++SP+ A+ F   +E  A  +Y 
Sbjct: 183 RMHLMTMTELVKPS-WHERLLVITAQGVFFNFFFVFYLLSPKAAHRFVGYLEEEAVISYT 241

Query: 226 KFIKA--QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
             + A  +GE ++ +PAPA+AI Y+                   R PK   L DV   IR
Sbjct: 242 DHLNAIERGE-VENVPAPAIAIDYW-------------------RLPKDATLKDVVTVIR 281

Query: 284 DDEAEH 289
            DEA H
Sbjct: 282 ADEAHH 287


>gi|224228409|dbj|BAH23672.1| alternative oxidase [Arum concinnatum]
          Length = 346

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 160 DIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKALLEEAENERMHLM 219

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 220 TFMEV-AQPRWYERALVVAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTEFLKE 278

Query: 231 -QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ +PAPA+A+ Y+                   R P    L DV + +R DEA H
Sbjct: 279 IDKGTIENVPAPAIALDYW-------------------RLPPGSTLRDVVMVVRADEAHH 319


>gi|226498802|ref|NP_001147743.1| transposon protein [Zea mays]
 gi|195613414|gb|ACG28537.1| transposon protein [Zea mays]
 gi|414585626|tpg|DAA36197.1| TPA: alternative oxidase [Zea mays]
          Length = 329

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 89/197 (45%), Gaps = 37/197 (18%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLK 156
           L +S+++     ++ R  +   +LET+A VP      +LH+     +E  G W RA    
Sbjct: 134 LVKSLVVPKQLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRAL--- 190

Query: 157 VHFAESWNEMHHLLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFS 213
               E+ NE  HL+   E+    WW +R L   AQ +    YFV    Y+ SP+ A+ F 
Sbjct: 191 --LEEAENERMHLMTFLEVAQPKWW-ERALVLAAQGVYFNAYFVA---YLASPKFAHRFV 244

Query: 214 ECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272
             +E  A  +Y +++K  +   +   PAPA+AI Y+              RLP   R   
Sbjct: 245 GYLEEEAVHSYTEYLKDLEAGIIDNTPAPAIAIDYW--------------RLPADAR--- 287

Query: 273 ENLYDVFLNIRDDEAEH 289
             L DV   +R DEA H
Sbjct: 288 --LKDVVAVVRADEAHH 302


>gi|308153044|dbj|BAJ22111.1| alternative oxidase 1d [Arum maculatum]
          Length = 343

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 157 DIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKALLEEAENERMHLM 216

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 217 TFMEV-SQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTEFLKE 275

Query: 231 -QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ +PAPA+A+ Y+                   R P    L DV + +R DEA H
Sbjct: 276 IDKGTIENVPAPAIALDYW-------------------RLPPGSTLRDVVMVVRADEAHH 316


>gi|1872517|gb|AAB49302.1| alternative oxidase, partial [Arabidopsis thaliana]
          Length = 287

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 101 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 160

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 161 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 219

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   R P    L DV + +R DEA H
Sbjct: 220 LDKGNIENVPAPAIAIDYW-------------------RLPADATLRDVVMVVRADEAHH 260


>gi|330690264|gb|AEC33278.1| mitochondrial alternative oxidase 1 [Hordeum vulgare subsp.
           spontaneum]
          Length = 328

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 142 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRA-----LLEEAENE 196

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 197 RMHLMTFMEV-AQPRWYERALVIVVQGVFFNAYFIGYLLSPKFAHRVVGYLEEEAVHSYT 255

Query: 226 KFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K   + K++ +PAPA+AI Y+                   R P    L DV   +R 
Sbjct: 256 EFLKDLDDGKIENVPAPAIAIDYW-------------------RLPANATLKDVVTVVRA 296

Query: 285 DEAEH 289
           DEA H
Sbjct: 297 DEAHH 301


>gi|126572031|gb|ABO21612.1| mitochondrial alternative oxidase [Cucurbita pepo]
          Length = 147

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 21/164 (12%)

Query: 127 TIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFL 186
           T+A VP      +LH+     +     ++K    E+ NE  HL+ M EL     W++R L
Sbjct: 1   TVAAVPGMVGGMLLHLKSLRRFQHSGGWIKALLEEAENERMHLMTMIELV-QPKWYERML 59

Query: 187 AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAI 245
              +   ++     +Y++SP++A+     +E  A  +Y +++K   E K++ +PAPA+AI
Sbjct: 60  VITVQGVFFNAFFVLYLMSPKLAHRVVGYLEEEAIHSYTEYLKDIDEGKIENVPAPAIAI 119

Query: 246 KYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            Y+                   R PK   L DV   IR DEA H
Sbjct: 120 DYW-------------------RLPKDARLKDVITVIRADEAHH 144


>gi|226897263|dbj|BAH56640.1| alternative oxidase 1b [Nelumbo nucifera]
          Length = 348

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 162 DLFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 216

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y+ISP++A+     +E  A  +Y 
Sbjct: 217 RMHLMTFMEV-SQPKWYERALVFTVQGIFFNAYFLAYLISPKLAHRAVGYLEEEAIHSYT 275

Query: 226 KFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K   +  ++ +PAPA+AI Y+                     P    L DV L +R 
Sbjct: 276 EFLKELDKGNIENVPAPAIAIDYW-------------------HLPPDSTLRDVVLAVRA 316

Query: 285 DEAEH 289
           DEA H
Sbjct: 317 DEAHH 321


>gi|40036985|gb|AAR37365.1| mitochondrial alternative oxidase [Nicotiana attenuata]
          Length = 353

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 167 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 226

Query: 171 IMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
              E+    W ++R   F  Q +    YFVT   Y++SP++A+     +E  A  +Y +F
Sbjct: 227 TFMEVAKPNW-YERALVFAVQGVFFNAYFVT---YLVSPKLAHRIVGYLEEEAIHSYTEF 282

Query: 228 IKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           +K   +  ++ +PAPA+AI Y+                   R PK   L DV + +R DE
Sbjct: 283 LKELDKGNIENVPAPAIAIDYW-------------------RLPKDSTLRDVVVVVRADE 323

Query: 287 AEH 289
           A H
Sbjct: 324 AHH 326


>gi|116488305|gb|ABJ98721.1| alternative oxidase [Gossypium hirsutum]
          Length = 331

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 33/186 (17%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 145 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 199

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+  +  W++R L   +   ++      Y+ISP+ A+     +E  A  +Y 
Sbjct: 200 RMHLMTFMEVS-DPRWYERALVFSVQGVFFNAYFLGYIISPKFAHRVVGYLEEEAIHSYT 258

Query: 226 KFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARL-PNSRRPKIENLYDVFLNIR 283
           +F+K      ++ +PAP +AI Y+              RL PNS       L DV L +R
Sbjct: 259 EFLKELDNGNIENVPAPPIAIDYW--------------RLSPNS------TLRDVVLAVR 298

Query: 284 DDEAEH 289
            DEA H
Sbjct: 299 ADEAHH 304


>gi|51860699|gb|AAU11469.1| mitochondrial alternative oxidase 1c [Saccharum officinarum]
          Length = 239

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 53  DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEPSGGWIRA-----LLEEAENE 107

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y 
Sbjct: 108 RMHLMTFMEVAKPK-WYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYT 166

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K  +  K++ +PAPA+AI Y+                   + P    L DV + +R 
Sbjct: 167 EYLKDLEAGKIENVPAPAIAIDYW-------------------QLPADATLKDVVIVVRS 207

Query: 285 DEAEH 289
           DEA H
Sbjct: 208 DEAHH 212


>gi|82409049|gb|ABB73306.1| alternative oxidase [Gossypium hirsutum]
          Length = 330

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 144 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 203

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+  +  W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 204 TFMEV-SDPRWYERALVFAVQGVFFNAYFLGYIISPKFAHRVVGYLEEEAIHSYTEFLKE 262

Query: 231 -QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ +PAP +AI Y+                   R P    L DV L +R DEA H
Sbjct: 263 LDNGNIENVPAPPIAIDYW-------------------RLPPNSTLRDVVLAVRADEAHH 303


>gi|350539075|ref|NP_001234117.1| alternative oxidase 1a [Solanum lycopersicum]
 gi|29465622|gb|AAK58482.1| alternative oxidase 1a [Solanum lycopersicum]
          Length = 358

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 23/181 (12%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNE-MHHL 169
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE MH +
Sbjct: 172 DVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 231

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
             ME    N   ++R L   +   ++      Y+ISP++A+     +E  A  +Y +F+K
Sbjct: 232 TFMEVAKPNV--YERALVFAVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVHSYTEFLK 289

Query: 230 A-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAE 288
                 ++ +PAPA+AI Y+                   R PK   L DV L +R DEA 
Sbjct: 290 ELDNGNIENVPAPAIAIDYW-------------------RLPKDATLRDVVLVVRADEAH 330

Query: 289 H 289
           H
Sbjct: 331 H 331


>gi|190710541|gb|ACE95101.1| mitochondrial alternative oxidase precursor [Citrus sinensis]
          Length = 336

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 31/202 (15%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGW 148
           F   + +   +S+    D  ++ R   R  +LET+A VP      +LH      +E  G 
Sbjct: 133 FSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGG 192

Query: 149 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
           W     +K    E+ NE  HL+   E+     W++R L   +   ++      Y+ISP+ 
Sbjct: 193 W-----IKALLEEAENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKF 246

Query: 209 AYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+     +E  A  +Y +F+K   +  ++ +PAPA+A  Y+                   
Sbjct: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW------------------- 287

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
           R P    L DV L +R DEA H
Sbjct: 288 RLPPNSTLKDVVLVVRADEAHH 309


>gi|162463026|ref|NP_001105663.1| alternative oxidase AOX3 precursor [Zea mays]
 gi|25989201|gb|AAL27797.1| alternative oxidase AOX3 precursor [Zea mays]
          Length = 332

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 37/198 (18%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYL 155
           L+ +S+ + +D  ++ R  +   +LET+A VP      +LH+     +E  G W RA   
Sbjct: 136 LIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRAL-- 193

Query: 156 KVHFAESWNEMHHLLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHF 212
                E+ NE  HL+   E+    WW +R L   AQ +    YF+    Y++SP+ A+  
Sbjct: 194 ---LEEAENERMHLMTFLEVTQPRWW-ERALVLTAQGVFFNAYFLG---YLLSPKFAHRV 246

Query: 213 SECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPK 271
              +E  A  +Y +++K  +   +   PAPA+AI Y+                   R P 
Sbjct: 247 VGYLEEEAVHSYTEYLKDLEAGIIDNTPAPAIAIDYW-------------------RLPA 287

Query: 272 IENLYDVFLNIRDDEAEH 289
              L DV   +R DEA H
Sbjct: 288 DAKLKDVVTVVRADEAHH 305


>gi|51860701|gb|AAU11470.1| mitochondrial alternative oxidase 1d [Saccharum officinarum]
          Length = 286

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 31/195 (15%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYL 155
           L+ +S+ + +D  ++ R  +   +LET+A VP      +LH+     +E  G W RA   
Sbjct: 90  LIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWVRAL-- 147

Query: 156 KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSEC 215
                E+ NE  HL+   E+    WW +R L       ++      Y++SP+ A+     
Sbjct: 148 ---LEEAENERMHLMTFLEVTQPRWW-ERALVLATQGVFFNAYFVGYLLSPKFAHRVVGY 203

Query: 216 VESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIEN 274
           +E  A  +Y +++K  +   ++  PAPA+AI Y+                   R P    
Sbjct: 204 LEEEAVHSYTEYLKDLEAGIIENSPAPAIAIDYW-------------------RLPADAK 244

Query: 275 LYDVFLNIRDDEAEH 289
           L DV   +R DEA H
Sbjct: 245 LKDVVTVVRADEAHH 259


>gi|321251112|ref|XP_003191963.1| alternative oxidase 1 [Cryptococcus gattii WM276]
 gi|317458431|gb|ADV20176.1| Alternative oxidase 1 [Cryptococcus gattii WM276]
          Length = 400

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 70/173 (40%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R  +LE+IA VP     ++ H+       R   ++     E+ NE  HLL    +   + 
Sbjct: 185 RIILLESIAGVPGMVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIAQPSI 244

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL----K 236
            F R L       +Y      Y+ISPR+A+ F   +E  A  TY   I      L    K
Sbjct: 245 -FTRALVLAAQGVFYNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWK 303

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            MPAPA+AI Y+                   R P   +L DV   +R DEA H
Sbjct: 304 DMPAPAIAIDYW-------------------RLPATSSLLDVIRAVRADEATH 337


>gi|113982|sp|P22185.1|AOX1_TYPVN RecName: Full=Ubiquinol oxidase 1, mitochondrial; AltName:
           Full=Alternative oxidase 1; Flags: Precursor
 gi|170165|gb|AAA34048.1| alternative oxidase protein [Typhonium venosum]
          Length = 349

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 163 DIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFEHSGGWIRA-----LLEEAENE 217

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 218 RMHLMTFMEV-AQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 276

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K      ++  PAPA+A+ Y+                   R P+   L DV   +R 
Sbjct: 277 EFLKDIDSGAIQDCPAPAIALDYW-------------------RLPQGSTLRDVVTVVRA 317

Query: 285 DEAEH 289
           DEA H
Sbjct: 318 DEAHH 322


>gi|6634501|emb|CAB64356.1| alternative oxidase [Populus tremula x Populus tremuloides]
          Length = 351

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 165 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKTLLDEAENE 219

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   +       Y+ISP+ A+     +E  A  +Y 
Sbjct: 220 RMHLMTFMEV-AKPRWYERALVITVQGVFLNAYFLGYIISPKFAHRMVGYLEEEAIHSYT 278

Query: 226 KFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K   +  ++ +PAPA+A+ Y+                   R P    L DV L +R 
Sbjct: 279 EFLKELDKGNIENVPAPAIAVDYW-------------------RLPPDATLRDVVLVVRA 319

Query: 285 DEAEH 289
           DEA H
Sbjct: 320 DEAHH 324


>gi|21216|emb|CAA78823.1| salicylic acid-inducible alternative oxidase [Typhonium venosum]
          Length = 349

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W RA        E+ NE
Sbjct: 163 DIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFEHSGGWIRA-----LLEEAENE 217

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 218 RMHLMTFMEV-AQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 276

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K      ++  PAPA+A+ Y+                   R P+   L DV   +R 
Sbjct: 277 EFLKDIDNGAIQDCPAPAIALDYW-------------------RLPQGSTLRDVVTVVRA 317

Query: 285 DEAEH 289
           DEA H
Sbjct: 318 DEAHH 322


>gi|242077038|ref|XP_002448455.1| hypothetical protein SORBIDRAFT_06g027430 [Sorghum bicolor]
 gi|241939638|gb|EES12783.1| hypothetical protein SORBIDRAFT_06g027430 [Sorghum bicolor]
          Length = 332

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 31/195 (15%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYL 155
           L+ +S+ + +D  ++ R  +   +LET+A VP      +LH+     +E  G W RA   
Sbjct: 136 LIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRA--- 192

Query: 156 KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSEC 215
                E+ NE  HL+   E+    WW +R L       ++      Y++SP+ A+     
Sbjct: 193 --LLEEAENERMHLMTFLEVTQPKWW-ERALVLATQGVFFNAYFVGYLLSPKFAHRVVGY 249

Query: 216 VESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIEN 274
           +E  A  +Y +++K  +   ++  PAPA+AI Y+                   R P    
Sbjct: 250 LEEEAVYSYTEYLKDLEAGIIENTPAPAIAIDYW-------------------RLPADAK 290

Query: 275 LYDVFLNIRDDEAEH 289
           L DV   +R DEA H
Sbjct: 291 LKDVVTVVRADEAHH 305


>gi|224135251|ref|XP_002322021.1| predicted protein [Populus trichocarpa]
 gi|222869017|gb|EEF06148.1| predicted protein [Populus trichocarpa]
          Length = 281

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 21/189 (11%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAE 161
           + +++ +  D  ++ R   R  +LET+A VP      +LH      +     ++K    E
Sbjct: 86  IVKALRLPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDE 145

Query: 162 SWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221
           + NE  HL+   E+     W++R L   +   +       Y+ISP+ A+     +E  A 
Sbjct: 146 AENERMHLMTFMEV-AKPRWYERALVITVQGVFLNAYFLGYIISPKFAHRMVGYLEEEAI 204

Query: 222 ETYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
            +Y +F+K   +  ++ +PAPA+A+ Y+                   R P    L DV L
Sbjct: 205 HSYTEFLKELDKGNIENVPAPAIAVDYW-------------------RLPPNATLRDVVL 245

Query: 281 NIRDDEAEH 289
            +R DEA H
Sbjct: 246 VVRADEAHH 254


>gi|302797945|ref|XP_002980733.1| hypothetical protein SELMODRAFT_112767 [Selaginella moellendorffii]
 gi|300151739|gb|EFJ18384.1| hypothetical protein SELMODRAFT_112767 [Selaginella moellendorffii]
          Length = 264

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 81/189 (42%), Gaps = 39/189 (20%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYLKVHFAESWN 164
           D L+R R   R  +LETI+ VP      VLH      +  S GW      +K    E+ N
Sbjct: 50  DLLFRQRYICRAAMLETISGVPGMVGGMVLHCKSLRRVEHSGGW------IKALMEEAEN 103

Query: 165 EMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221
           E  HL+   EL   +W  +R   F AQ + +  YF+   +YV+SPR A+  +  +     
Sbjct: 104 ERMHLMTFMELSKPSWQ-ERALVFTAQGMFMNAYFL---LYVVSPRFAHRMAGYIREETI 159

Query: 222 ETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           ++Y + I      K+   PAP +AI Y+                   R P    L DV +
Sbjct: 160 QSYTQLINDIDDGKVPNAPAPDLAIDYW-------------------RLPMDATLRDVVM 200

Query: 281 NIRDDEAEH 289
            IR DE  H
Sbjct: 201 VIRADEIHH 209


>gi|46452193|gb|AAS98193.1| alternative oxidase 1au [Solanum lycopersicum]
          Length = 358

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 23/181 (12%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNE-MHHL 169
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE MH +
Sbjct: 172 DVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 231

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
             ME    N   ++R L   +   ++      Y+ISP++A+     +E  A  +Y +F+K
Sbjct: 232 TFMEVAKPNV--YERALVFAVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVLSYTEFLK 289

Query: 230 A-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAE 288
                 ++ +PAPA+AI Y+                   R PK   L DV L +R DEA 
Sbjct: 290 ELDNGNIENVPAPAIAIDYW-------------------RLPKDATLRDVVLVVRADEAH 330

Query: 289 H 289
           H
Sbjct: 331 H 331


>gi|357137162|ref|XP_003570170.1| PREDICTED: alternative oxidase 1a, mitochondrial-like [Brachypodium
           distachyon]
          Length = 343

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 31/193 (16%)

Query: 103 TESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKV 157
            +S+ +  D  ++ R   R  +LET+A VP      +LH+     +E  G W RA     
Sbjct: 149 VKSLRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRA----- 203

Query: 158 HFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVE 217
              E+ NE  HL+   E+ G   W++R L   +   ++      Y++SP+ A+     +E
Sbjct: 204 LLEEAENERMHLMTFMEVAGPK-WYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLE 262

Query: 218 SHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLY 276
             A  +Y +F++  +  K+  +PAP +AI Y+                   R P    L 
Sbjct: 263 EEAVHSYTEFLRDIEAGKIDNVPAPRIAIDYW-------------------RLPPDATLR 303

Query: 277 DVFLNIRDDEAEH 289
           DV + +R DEA H
Sbjct: 304 DVVVVVRADEAHH 316


>gi|323575420|dbj|BAJ78238.1| alternative oxidase 1g [Arum maculatum]
          Length = 343

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 157 DIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKALLEEAENERMHLM 216

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +F+K 
Sbjct: 217 TFMEV-AQPRWYERALVVAVQGVFFNAYFVGYLLSPKFAHRVVGYLEEEAIHSYTEFLKD 275

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++  PAPA+A+ Y+                   R P+   L DV   +R DEA H
Sbjct: 276 IDSGAIQDTPAPAIALDYW-------------------RLPQGSTLRDVVAVVRADEAHH 316


>gi|302800473|ref|XP_002981994.1| hypothetical protein SELMODRAFT_421378 [Selaginella moellendorffii]
 gi|300150436|gb|EFJ17087.1| hypothetical protein SELMODRAFT_421378 [Selaginella moellendorffii]
          Length = 335

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  +++R      +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 149 DLFFQERHGCHAVLLETVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLM 208

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++     +Y+I PR+A+ F   +E  A  +Y +F+ A
Sbjct: 209 TFMEVF-QPKWYERALVLAVQGVFFNGYFALYLIFPRLAHRFVGYLEEEAVASYTEFLAA 267

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  +   PAPA+AI Y+                   R P    L DV   +R DEA H
Sbjct: 268 LDKGSMPNTPAPAIAIDYW-------------------RLPSDATLRDVVFVVRADEAHH 308


>gi|260268365|dbj|BAI44020.1| alternative oxidase [Microdochium nivale]
          Length = 355

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 27/194 (13%)

Query: 103 TESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAES 162
           T   +MV   L   +   RF  LE+IA VP      + H++      R   +++    ES
Sbjct: 137 TGKTVMVPRILNESQWLIRFIFLESIAGVPGMVAGMLRHLHSLRKLKRDNGWIETLLEES 196

Query: 163 WNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAF 221
           +NE  HL++   L    W+    +    A   YF  +F+ Y+ISP++ + F   +E  A 
Sbjct: 197 YNERMHLMVFMRLCEPGWFMKTMILG--AQGIYFNALFLSYLISPKITHRFVGYLEEEAV 254

Query: 222 ETYDKFI-KAQGEKLKK-----MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENL 275
            TY   I + +   L+K       AP +AI Y+              R+P  RR     +
Sbjct: 255 HTYTTAIEQIEAGHLEKWSSPNFQAPDIAISYW--------------RMPEGRR----TM 296

Query: 276 YDVFLNIRDDEAEH 289
            D+ L IR DEA H
Sbjct: 297 RDLLLYIRADEACH 310


>gi|147799085|emb|CAN72564.1| hypothetical protein VITISV_018234 [Vitis vinifera]
          Length = 218

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 39/189 (20%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     ++V   E+ NE
Sbjct: 32  DIFFKRRFEMRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IRVLLEEAENE 86

Query: 166 MHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
             HL+   E+     W++R   F  Q I   +YFV    YVISP++A+     +E  A  
Sbjct: 87  RMHLMTFMEVA-KPRWYERALVFAVQGIFWNFYFVA---YVISPKVAHRAVGYLEEEAIH 142

Query: 223 TYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARL-PNSRRPKIENLYDVFL 280
           +Y++FIK      +  +PAPA+AI Y+              RL P+S       L DV +
Sbjct: 143 SYNEFIKELDSGNIPNVPAPAIAIDYW--------------RLAPDS------TLRDVVM 182

Query: 281 NIRDDEAEH 289
            +R DEA H
Sbjct: 183 VVRADEAHH 191


>gi|308153046|dbj|BAJ22112.1| alternative oxidase 1e [Arum maculatum]
          Length = 343

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 157 DIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKALLEEAENERMHLM 216

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +F+K 
Sbjct: 217 TFMEV-AQPRWYERALVVAVQGVFFNAYFVGYLLSPKFAHRVVGYLEEEAIHSYTEFLKD 275

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++  PAPA+A+ Y+                   R P+   L DV   +R DEA H
Sbjct: 276 IDSGAIQNTPAPAIALDYW-------------------RLPQGSTLRDVVAVVRADEAHH 316


>gi|33087083|gb|AAP92755.1| alternative oxidase 2 [Solanum lycopersicum]
          Length = 173

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 23/167 (13%)

Query: 125 LETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR 184
           LET+A VP      +LH+     +     ++K    E+ NE  HL+ M EL     W++R
Sbjct: 1   LETVAGVPGMVGGMLLHLRSLRKFEHSGGWIKALLEEAENERMHLMTMVEL-VQPKWYER 59

Query: 185 FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK--AQGEKLKKMPAPA 242
            L   +   ++     +Y++SP++A+     +E  A  +Y  ++    +GE ++ +PAPA
Sbjct: 60  LLVIAVQGVFFNFYSVLYLLSPKLAHRVVGYLEEEAIHSYTLYLNDIDRGE-IENVPAPA 118

Query: 243 VAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +AI Y+                   R PK   L DV   IR DEA H
Sbjct: 119 IAIDYW-------------------RLPKDATLKDVITVIRADEAHH 146


>gi|404160475|gb|AFR53081.1| AOX [Anthurium andraeanum]
          Length = 345

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 159 DVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKGLLEEAENERMHLM 218

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +F+K 
Sbjct: 219 TFMEVV-QPRWYERALVMTVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKE 277

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ +PAPA+A+ Y+                   R P    L DV + IR DEA H
Sbjct: 278 IDKGTIENVPAPAIALDYW-------------------RLPPGSTLRDVVMVIRADEAHH 318


>gi|225571959|gb|ABZ81227.2| mitochondrial alternative oxidase 1a [Daucus carota]
          Length = 326

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 140 DVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKTLLDEAENE 194

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y+ SP++A+     +E  A  +Y 
Sbjct: 195 RMHLMTFMEV-SQPRWYERALVFTVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIHSYT 253

Query: 226 KFIKAQGEK-LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K   +  ++ +PAPA+AI Y+                   R P    L DV + +R 
Sbjct: 254 EFLKELDKGTIENVPAPAIAIDYW-------------------RLPADSTLRDVVMVVRA 294

Query: 285 DEAEH 289
           DEA H
Sbjct: 295 DEAHH 299


>gi|224228411|dbj|BAH23673.1| alternative oxidase [Arum concinnatum]
          Length = 346

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 160 DIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKALLEEAENERMHLM 219

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +F+K 
Sbjct: 220 TFMEV-AQPRWYERALVVAVQGVFFNAYFVGYLLSPKFAHRVVGYLEEEAIHSYTEFLKD 278

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++  PAPA+A+ Y+                   R P+   L DV   +R DEA H
Sbjct: 279 IDSGAIQDTPAPAIALDYW-------------------RLPQGSTLRDVVAVVRADEAHH 319


>gi|70799007|gb|AAZ09196.1| mitochondrial alternative oxidase 1 [Vigna unguiculata]
 gi|70799009|gb|AAZ09197.1| mitochondrial alternative oxidase 1 [Vigna unguiculata]
          Length = 316

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 130 DLFFQRRYGCRAMMLETVAAVPGMVAGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLM 189

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 190 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYMISPKFAHRMVGYLEEEAIHSYTEFLKE 248

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   + P    L DV   +R DEA H
Sbjct: 249 LDKGNIENVPAPAIAIDYW-------------------QLPPDSTLKDVVTVVRADEAHH 289


>gi|84386378|ref|ZP_00989406.1| alternative oxidase [Vibrio splendidus 12B01]
 gi|84378802|gb|EAP95657.1| alternative oxidase [Vibrio splendidus 12B01]
          Length = 210

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 84/202 (41%), Gaps = 31/202 (15%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVLHMYESFGW 148
           F + V +L+T  +   L+  Y      R  +LETIA VP      F  +  L   +  G 
Sbjct: 13  FSEKVALLVTRLLKKTLNLFYGKHLAKRAMLLETIAAVPGMVAGVFNHLKALRRMKDDGG 72

Query: 149 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
           W     +K    E+ NE  HL+I   +  N    +R L   +   +  +   +Y++S + 
Sbjct: 73  W-----IKELLDEADNERMHLMIFLTVT-NPSIIERILVMLLQFIFLLIYGVIYLVSSKT 126

Query: 209 AYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+      E  A  +Y ++I K Q   L   PAP +AIKYY                   
Sbjct: 127 AHRIVGYFEEEACNSYSEYISKIQDGTLPNHPAPEIAIKYY------------------- 167

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
           R P+     DV   IR+DEA+H
Sbjct: 168 RLPENATFLDVLFCIREDEAKH 189


>gi|208436640|gb|ACI28866.1| mitochondrial alternative oxidase 2, partial [Vitis vinifera]
          Length = 143

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 21/162 (12%)

Query: 129 ARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQ 188
           A VP      +LH+     + +   ++K    E+ NE  HL+ M EL     W++R L  
Sbjct: 1   AAVPGMVGGMLLHLRSLRKFEQSGGWIKALLEEAENERMHLMTMVELV-QPKWYERVLVL 59

Query: 189 HIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKY 247
            +   ++     +Y++SP++A+     +E  A  +Y +++K     K++ +PAPA+AI Y
Sbjct: 60  TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGKIENVPAPAIAIDY 119

Query: 248 YTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +                   R PK   L DV   IR DEA H
Sbjct: 120 W-------------------RLPKDATLKDVITVIRADEAHH 142


>gi|302808760|ref|XP_002986074.1| hypothetical protein SELMODRAFT_446465 [Selaginella moellendorffii]
 gi|300146222|gb|EFJ12893.1| hypothetical protein SELMODRAFT_446465 [Selaginella moellendorffii]
          Length = 335

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 22/191 (11%)

Query: 101 LLTESVIMVL-DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHF 159
           L T   + VL D  +++R      +LET+A VP      +LH      +     ++K   
Sbjct: 138 LKTVKFLRVLSDLFFQERHGCHAVLLETVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALL 197

Query: 160 AESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESH 219
            E+ NE  HL+   E+     W++R L   +   ++     +Y+I PR+A+ F   +E  
Sbjct: 198 EEAENERMHLMTFMEVF-QPKWYERALVLAVQGVFFNGYFALYLIFPRLAHRFVGYLEEE 256

Query: 220 AFETYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDV 278
           A  +Y  F+ A  +  +   PAPA+AI Y+                   R P    L DV
Sbjct: 257 AVASYTDFLAALDKGSMPNTPAPAIAIDYW-------------------RLPSDATLRDV 297

Query: 279 FLNIRDDEAEH 289
              +R DEA H
Sbjct: 298 VFVVRADEAHH 308


>gi|1588565|prf||2208475A alternative oxidase 1
          Length = 344

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 158 DIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKALLEEAENERMHLM 217

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +F+K 
Sbjct: 218 TFMEV-SQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKE 276

Query: 231 -QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                +  +PAPA+A+ Y+                   R P    L DV + +R DEA H
Sbjct: 277 IDKGTIDNVPAPAIALDYW-------------------RLPPGSTLRDVVMVVRADEAHH 317


>gi|433335543|gb|AGB34165.1| mitochondrial alternative oxidase 2, partial [Olea europaea subsp.
           europaea]
          Length = 169

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 21/162 (12%)

Query: 129 ARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQ 188
           A VP      +LH+     + +   ++K    E+ NE  HL+ M EL     W++R L  
Sbjct: 1   AAVPGMVGGMLLHLRSLRKFEQSGGWIKALLEEAENERMHLMTMVELV-QPKWYERVLVL 59

Query: 189 HIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKY 247
            +   ++     +Y++SP++A+     +E  A  +Y +++K     K++ +PAPA+AI Y
Sbjct: 60  TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGKIENVPAPAIAIDY 119

Query: 248 YTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +                   R PK   L DV   IR DEA H
Sbjct: 120 W-------------------RLPKDATLKDVITVIRADEAHH 142


>gi|357484585|ref|XP_003612580.1| Alternative oxidase [Medicago truncatula]
 gi|355513915|gb|AES95538.1| Alternative oxidase [Medicago truncatula]
          Length = 330

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 144 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 203

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +F+K 
Sbjct: 204 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKE 262

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   + P+   L DV   +R DEA H
Sbjct: 263 LDKGNIENVPAPAIAIDYW-------------------QLPQNSTLRDVVEVVRADEAHH 303


>gi|208436660|gb|ACI28876.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 297

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 39/189 (20%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     ++V   E+ NE
Sbjct: 134 DIFFKRRFEMRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IRVLLEEAENE 188

Query: 166 MHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
             HL+   E+     W++R   F  Q I   +YFV    YVISP++A+     +E  A  
Sbjct: 189 RMHLMTFMEV-AKPRWYERALVFAVQGIFWNFYFVA---YVISPKVAHRAVGYLEEEAIH 244

Query: 223 TYDKFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARL-PNSRRPKIENLYDVFL 280
           + ++FIK      +  +PAPA+AI Y+              RL P+S       L DV +
Sbjct: 245 SCNEFIKELDSGNIPNVPAPAIAIDYW--------------RLAPDS------TLRDVVM 284

Query: 281 NIRDDEAEH 289
             R DEA H
Sbjct: 285 VARADEAHH 293


>gi|190710539|gb|ACE95100.1| mitochondrial alternative oxidase precursor [Citrus sinensis]
          Length = 147

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 21/163 (12%)

Query: 128 IARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLA 187
           +A VP      +LH+     +     ++K    E+ NE  HL+ M EL    W ++R L 
Sbjct: 1   VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKW-YERMLV 59

Query: 188 QHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIK 246
             +   ++     +Y++SP++A+     +E  A  +Y +++K      ++ +PAPA+AI 
Sbjct: 60  LTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAID 119

Query: 247 YYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           Y+                   R PK   L DV   IR DEA H
Sbjct: 120 YW-------------------RLPKDATLKDVITVIRADEAHH 143


>gi|2811176|gb|AAB97839.1| alternative oxidase, partial [Zea mays]
          Length = 149

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 31/173 (17%)

Query: 123 FVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNEMHHLLIMEELGG 177
            +LET+A VP      +LH+     +E  G W RA        E+ NE  HL+   E+  
Sbjct: 2   MMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRAL-----LEEAENERMHLMTFMEVA- 55

Query: 178 NAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLK 236
              W++R L   +   ++      Y++SP+ A+     +E  A  +Y +++K  +  K++
Sbjct: 56  KPRWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEYLKDLEAGKIE 115

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           K PAPA+AI Y+                   R P    L DV   +R DEA H
Sbjct: 116 KRPAPAIAIDYW-------------------RLPANATLKDVVTVVRADEAHH 149


>gi|351720843|ref|NP_001236166.1| ubiquinol oxidase 1, mitochondrial [Glycine max]
 gi|3334449|sp|Q07185.1|AOX1_SOYBN RecName: Full=Ubiquinol oxidase 1, mitochondrial; AltName:
           Full=Alternative oxidase 1; Flags: Precursor
 gi|395216|emb|CAA48653.1| alternative oxidase [Glycine max]
 gi|740229|prf||2004454A respiratory chain terminal oxidase
          Length = 321

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W      K    E+ NE
Sbjct: 135 DVFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGW-----FKALLEEAENE 189

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 190 RMHLMTFMEVAKPK-WYERALVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYT 248

Query: 226 KFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K   +  ++ +PAPA+AI Y+                   + P    L DV + +R 
Sbjct: 249 EFLKELDKGNIENVPAPAIAIDYW-------------------QLPPGSTLRDVVMVVRA 289

Query: 285 DEAEH 289
           DEA H
Sbjct: 290 DEAHH 294


>gi|15232222|ref|NP_189399.1| alternative oxidase 1C [Arabidopsis thaliana]
 gi|3913142|sp|O22048.1|AOX1C_ARATH RecName: Full=Ubiquinol oxidase 1c, mitochondrial; AltName:
           Full=Alternative oxidase 1c; Flags: Precursor
 gi|2506049|dbj|BAA22635.1| alternative oxidase [Arabidopsis thaliana]
 gi|9294467|dbj|BAB02686.1| alternative oxidase [Arabidopsis thaliana]
 gi|28393506|gb|AAO42174.1| putative alternative oxidase 1c precursor [Arabidopsis thaliana]
 gi|28973125|gb|AAO63887.1| putative alternative oxidase 1c precursor [Arabidopsis thaliana]
 gi|332643824|gb|AEE77345.1| alternative oxidase 1C [Arabidopsis thaliana]
          Length = 329

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 21/189 (11%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAE 161
           + +S+    D  ++ R   R  +LET+A VP      ++H      + +   ++K    E
Sbjct: 134 MVKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEE 193

Query: 162 SWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221
           + NE  HL+   E+    W ++R L   +   ++   +  Y+ISP+ A+     +E  A 
Sbjct: 194 AENERMHLMTFMEVAKPKW-YERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEAI 252

Query: 222 ETYDKFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
            +Y +F+K      ++ +PAPA+A+ Y+                   R      L DV +
Sbjct: 253 HSYTEFLKELDNGNIENVPAPAIAVDYW-------------------RLEADATLRDVVM 293

Query: 281 NIRDDEAEH 289
            +R DEA H
Sbjct: 294 VVRADEAHH 302


>gi|297818362|ref|XP_002877064.1| hypothetical protein ARALYDRAFT_347138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322902|gb|EFH53323.1| hypothetical protein ARALYDRAFT_347138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 330

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 21/189 (11%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAE 161
           + +S+    D  ++ R   R  +LET+A VP      ++H      + +   ++K    E
Sbjct: 135 MVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEE 194

Query: 162 SWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221
           + NE  HL+   E+    W ++R L   +   ++   +  Y+ISP+ A+     +E  A 
Sbjct: 195 AENERMHLMTFMEVAKPKW-YERALVIAVQGVFFNAYLLGYLISPKFAHRMVGYLEEEAI 253

Query: 222 ETYDKFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
            +Y +F+K      ++ +PAPA+AI Y+                   R      L DV +
Sbjct: 254 HSYTEFLKELDNGNIENVPAPAIAIDYW-------------------RLEADATLRDVVM 294

Query: 281 NIRDDEAEH 289
            +R DEA H
Sbjct: 295 VVRADEAHH 303


>gi|390603194|gb|EIN12586.1| alternative oxidase [Punctularia strigosozonata HHB-11173 SS5]
          Length = 379

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 26/204 (12%)

Query: 116 DRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175
           D+   R   LETIA VP     S+ H+       R + ++     E+ NE  HL+    L
Sbjct: 161 DQWLQRAIFLETIAAVPGMVAASIRHLNSLRLMRRDSGWIHTLLEEAENERMHLMTFMAL 220

Query: 176 GGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEK 234
                WF R L       +Y V    Y+ +P++ + F   +E  A  TY + I+  +  +
Sbjct: 221 RRPGLWF-RTLVMGAQGVFYNVFFLSYLFAPKVCHRFVGYLEEEAVLTYTRCIQDIEAGR 279

Query: 235 LKK---MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH-- 289
           L +   MPAP++AI Y+                   R P+   L DV   IR DE  H  
Sbjct: 280 LPEWADMPAPSIAIDYW-------------------RLPQDSKLLDVIYAIRSDETNHRF 320

Query: 290 CKTMKACQTHGNLRSPHSYSEDDF 313
                A   H    +P ++ E D 
Sbjct: 321 VNHTLANLNHKTDVNPFAFREPDM 344


>gi|449016571|dbj|BAM79973.1| mitochondrial alternative oxidase [Cyanidioschyzon merolae strain
           10D]
          Length = 383

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 91/218 (41%), Gaps = 35/218 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMY------ESFGWWRRADYLKVHFAESWN 164
           DA ++ R   R  VLET+A VP      +LH+       +S GW      ++V   E+ N
Sbjct: 188 DAFFQRRYGHRAVVLETVAAVPGMVGGMMLHLQCLRRFRQSGGW------IRVLLEEAEN 241

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E  HL++   +       +R L       ++     +Y ISP+ A+     +E  A  +Y
Sbjct: 242 ERMHLMVYMSI-AQPRALERALVILAQAGFFSFYTLLYTISPKTAHRLVGYLEEEAIVSY 300

Query: 225 DKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
            +++K     ++  +PAP +AI Y+        D       PN+R      L DV L  R
Sbjct: 301 TEYLKDIDDGRIPNIPAPPIAIDYWQ------LD-------PNAR------LRDVVLATR 341

Query: 284 DDEAEH--CKTMKACQTHGNLRSPHSYSEDDFGCEDES 319
            DEA H     ++A     +   P  Y+    G  D S
Sbjct: 342 ADEAHHRDVNHLRANLIKAHRGDPAPYAALKHGEVDPS 379


>gi|12583703|dbj|BAB21500.1| alternative oxidase [Catharanthus roseus]
          Length = 353

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 167 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 221

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y+ SP++A+     +E  A  +Y 
Sbjct: 222 RMHLMTFMEV-SKPRWYERALVFAVQGVFFNAYFLTYLASPKLAHRIVGYLEEEAIHSYS 280

Query: 226 KFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+ +     ++ +PAPA+AI Y+                   + P    L DV + +R 
Sbjct: 281 EFLNELDKGNIENVPAPAIAIDYW-------------------QMPPDSTLRDVVMVVRA 321

Query: 285 DEAEH 289
           DEA H
Sbjct: 322 DEAHH 326


>gi|225427480|ref|XP_002262982.1| PREDICTED: alternative oxidase 3, mitochondrial [Vitis vinifera]
 gi|296088482|emb|CBI37473.3| unnamed protein product [Vitis vinifera]
          Length = 322

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 27/202 (13%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           +KF         +++ +     ++ +      +LET+A VP      +LH      + + 
Sbjct: 117 VKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVPGMVGGMLLHCQSPRRFEQS 176

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRM 208
             ++K    E+ NE  HL+   EL     W++R   F  Q +    YF+T   Y+ SP++
Sbjct: 177 GGWIKALLEEAENERMHLMTFIEL-AKPQWYERAIVFAVQGVFFNAYFLT---YLASPKV 232

Query: 209 AYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+  +  +E  A  +Y +F+K       + +PAPA+AI Y+                   
Sbjct: 233 AHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYW------------------- 273

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
           R P    L DV   IR DEA H
Sbjct: 274 RLPAESTLRDVVEVIRADEAHH 295


>gi|147782375|emb|CAN70584.1| hypothetical protein VITISV_001908 [Vitis vinifera]
          Length = 285

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 27/202 (13%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           +KF         +++ +     ++ +      +LET+A VP      +LH      + + 
Sbjct: 80  VKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVPGMVGGMLLHCQSXRRFEQS 139

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRM 208
             ++K    E+ NE  HL+   EL     W++R   F  Q +    YF+T   Y+ SP++
Sbjct: 140 GGWIKALLEEAENERMHLMTFIELA-KPQWYERAJVFAVQGVFFNAYFLT---YLASPKV 195

Query: 209 AYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+  +  +E  A  +Y +F+K       + +PAPA+AI Y+                   
Sbjct: 196 AHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYW------------------- 236

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
           R P    L DV   IR DEA H
Sbjct: 237 RLPAESTLRDVVEVIRADEAHH 258


>gi|344232988|gb|EGV64861.1| hypothetical protein CANTEDRAFT_104081 [Candida tenuis ATCC 10573]
          Length = 312

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 79/176 (44%), Gaps = 27/176 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A +P      + H++      R   +++    E++NE  HLL    LG  +
Sbjct: 110 TRCIFLESVAGIPGMTAAFIRHLHSLRLLKRDKAWIETLLDEAYNERIHLLTFINLGKPS 169

Query: 180 WW--FDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKLK 236
           W+  F  F+ Q +    +F   F Y+  P+  + F   +E  A  TY  FIK     KLK
Sbjct: 170 WFTRFFIFMGQGVFCNIFF---FNYLFFPKFCHRFVGYLEEEAVSTYSHFIKELDAGKLK 226

Query: 237 K---MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           K   M  P VAI+YY  G L   DE  T R             D+ L +R DEA+H
Sbjct: 227 KFDDMAIPPVAIQYY--GTL---DEKSTIR-------------DLILCVRADEAKH 264


>gi|125583366|gb|EAZ24297.1| hypothetical protein OsJ_08049 [Oryza sativa Japonica Group]
          Length = 175

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 31/173 (17%)

Query: 123 FVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNEMHHLLIMEELGG 177
            +LET+A VP      +LH+     +E  G W RA        E+ NE  HL+   E+  
Sbjct: 1   MMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRAL-----LEEAENERMHLMTFMEVA- 54

Query: 178 NAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLK 236
              W++R L   +   ++      Y++SP++A+     +E  A  +Y +++K  +  K++
Sbjct: 55  KPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIE 114

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +PAP +AI Y+                   R P    L DV + +R DEA H
Sbjct: 115 NVPAPPIAIDYW-------------------RLPAGATLKDVVVVVRADEAHH 148


>gi|3599419|gb|AAC35354.1| alternative oxidase precursor [Glycine max]
          Length = 321

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP       LH      +E  G W      K    E+ NE
Sbjct: 135 DVFFQRRYGCRAMMLETVAAVPGMVAGMQLHCKSLRRFEHSGGW-----FKALLEEAENE 189

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+    W ++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 190 RMHLMTFMEVAKPKW-YERALVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYT 248

Query: 226 KFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K   +  ++ +PAPA+AI Y+                   + P    L DV + +R 
Sbjct: 249 EFLKELDKGNIENVPAPAIAIDYW-------------------QLPPGSTLRDVVMVVRA 289

Query: 285 DEAEH 289
           DEA H
Sbjct: 290 DEAHH 294


>gi|302805258|ref|XP_002984380.1| hypothetical protein SELMODRAFT_180978 [Selaginella moellendorffii]
 gi|300147768|gb|EFJ14430.1| hypothetical protein SELMODRAFT_180978 [Selaginella moellendorffii]
          Length = 335

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 149 DIFFQRRYGCRAMMLETVAGVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 203

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      YV+ PR+A+     +E  A  +Y 
Sbjct: 204 RMHLMTFMEVV-QPKWYERALVFTVQGVFFNAYFLCYVLFPRLAHRIVGYLEEEAIHSYT 262

Query: 226 KFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K      +  +PAPA+AI Y+                   R PK   + DV   +R 
Sbjct: 263 QYLKEIDKGTIPNVPAPAIAIDYW-------------------RLPKDAKMRDVVEVVRA 303

Query: 285 DEAEH 289
           DEA H
Sbjct: 304 DEAHH 308


>gi|297830952|ref|XP_002883358.1| hypothetical protein ARALYDRAFT_342380 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329198|gb|EFH59617.1| hypothetical protein ARALYDRAFT_342380 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 324

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      ++H      + +   ++K    E+ NE  HL+
Sbjct: 138 DVFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLM 197

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+    W ++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 198 TFMEVAKPNW-YERALVIAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 256

Query: 231 -QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ +PAPA+AI Y+                   R      L DV + +R DEA H
Sbjct: 257 LDNGNIENVPAPAIAIDYW-------------------RLEADATLRDVVMVVRADEAHH 297


>gi|453084800|gb|EMF12844.1| mitochondrial alternative oxidase [Mycosphaerella populorum SO2202]
          Length = 353

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 34/211 (16%)

Query: 116 DRDYA-RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE 174
           +R Y  R   LE++A VP  A   + H++      R   +++    ES+NE  HLL   +
Sbjct: 142 ERQYMIRNIFLESVAGVPGMAAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLTFLK 201

Query: 175 LGGNAWWFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK--- 229
           +    W+    +  AQ +    +FV+   Y+ISP+  + F   +E  A  TY + I+   
Sbjct: 202 MAEPGWFMKIMVLGAQGVFFNAFFVS---YLISPKTCHRFVGHLEEEAVLTYTREIQDLD 258

Query: 230 -AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAE 288
                K +KM AP +A+KY+               +P  RR     + D+ L IR DE++
Sbjct: 259 AGHLPKWEKMVAPDIAVKYWN--------------MPADRR----TMRDLLLYIRADESK 300

Query: 289 HCKTMKACQTHGNL---RSPHSYSEDDFGCE 316
           H    +   T GNL     P+ Y  + +  E
Sbjct: 301 H---REVNHTLGNLDQKEDPNPYVSEYYDAE 328


>gi|170674867|gb|ACB30184.1| mitochondrial alternative oxidase 2 [Hypericum perforatum]
          Length = 147

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 21/163 (12%)

Query: 128 IARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLA 187
           +A VP      +LH+     + +   ++K    E+ NE  HL+ M EL     W++R L 
Sbjct: 1   VAAVPGMVGGMLLHLRSLRKFEQTGGWVKALLEEAENERMHLMTMVELV-QPKWYERMLV 59

Query: 188 QHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIK 246
             +   ++     +Y++SP++A+  +  +E  A  +Y +++K  +  K++ + APA+AI 
Sbjct: 60  LIVQGLFFNAYFVIYLVSPKLAHRVTGYLEEEAIHSYTEYLKDIRSGKIENVKAPAIAID 119

Query: 247 YYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           Y+                   R PK   L DV   IR DEA H
Sbjct: 120 YW-------------------RLPKEATLEDVITVIRADEAHH 143


>gi|357484587|ref|XP_003612581.1| Alternative oxidase [Medicago truncatula]
 gi|355513916|gb|AES95539.1| Alternative oxidase [Medicago truncatula]
          Length = 262

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 76  DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 135

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +F+K 
Sbjct: 136 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKE 194

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   + P+   L DV   +R DEA H
Sbjct: 195 LDKGNIENVPAPAIAIDYW-------------------QLPQNSTLRDVVEVVRADEAHH 235


>gi|208436656|gb|ACI28874.1| mitochondrial alternative oxidase 2, partial [Vitis vinifera]
          Length = 124

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 27/148 (18%)

Query: 144 ESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYV 203
           +S GW      +K    E+ NE  HL+ M EL    W ++R L   +   ++     +Y+
Sbjct: 3   QSGGW------IKALLEEAENERMHLMTMVELVQPKW-YERVLVLTVQGVFFNAFFVLYL 55

Query: 204 ISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTA 262
           +SP++A+     +E  A  +Y +++K     K++ +PAPA+AI Y+              
Sbjct: 56  LSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGKIENVPAPAIAIDYW-------------- 101

Query: 263 RLPNSRRPKIENLYDVFLNIRDDEAEHC 290
                R PK   L DV   IR DEA H 
Sbjct: 102 -----RLPKDATLKDVITVIRADEAHHS 124


>gi|2696032|dbj|BAA23803.1| alternative oxidase [Catharanthus roseus]
          Length = 353

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 167 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 221

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y+ SP++A+     +E  A  +Y 
Sbjct: 222 RMHLMTFMEV-SKPRWYERALVFAVQGVFFNAYFLTYLASPKLAHRIVGYLEEEAIHSYS 280

Query: 226 KFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+    +  ++ +PAPA+AI Y+                   + P    L DV + +R 
Sbjct: 281 EFLNELDKGNIENVPAPAIAIDYW-------------------QMPPDSTLRDVVMVVRA 321

Query: 285 DEAEH 289
           DEA H
Sbjct: 322 DEALH 326


>gi|315050338|ref|XP_003174543.1| alternative oxidase [Arthroderma gypseum CBS 118893]
 gi|311339858|gb|EFQ99060.1| alternative oxidase [Arthroderma gypseum CBS 118893]
          Length = 358

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H++      R   +++    E++NE  HLL   +L     
Sbjct: 156 RFVFLETVAGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPG- 214

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
           WF R +       ++      Y+ISPR  + F   +E  A  TY   IK     +    K
Sbjct: 215 WFMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEDGKLPAWK 274

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           ++PAP +AIKY+               +P       + + D+   +R DEA+H
Sbjct: 275 ELPAPDIAIKYWN--------------MPEGH----QKMVDLLYYVRADEAKH 309


>gi|367046356|ref|XP_003653558.1| hypothetical protein THITE_2116081 [Thielavia terrestris NRRL 8126]
 gi|347000820|gb|AEO67222.1| hypothetical protein THITE_2116081 [Thielavia terrestris NRRL 8126]
          Length = 367

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 28/233 (12%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           I  EQ V++    + +     L   +   R   LE+IA VP      + H++      R 
Sbjct: 135 IGREQQVDMKNPTTAVAAEKPLTEAQWLVRIIFLESIAGVPGMVGGMLRHLHSLRRLKRD 194

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAY 210
             +++    ES+NE  HLL+   +    W+    +    A   +F  +F+ Y+ISP++ +
Sbjct: 195 NGWIETLLEESYNERMHLLVFTRMAEPGWFMKTMILG--AQGVFFNAMFLSYLISPKICH 252

Query: 211 HFSECVESHAFETYDKFIK--AQGEKLK----KMPAPAVAIKYYTGGDLYLFDEFQTARL 264
            F   +E  A  TY + +K    G+  K    K   P +A  Y+              R+
Sbjct: 253 RFVGYLEEEAVHTYTRLLKEIENGDLPKWSNPKFEVPEIAATYW--------------RM 298

Query: 265 PNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSY-SEDDFGCE 316
           P  +R     + D+ L +R DEA H            +  P+ + SE   G E
Sbjct: 299 PEGKR----TMRDLILYVRADEAVHRGVNHTLGNLNQVEDPNPFVSEYKAGAE 347


>gi|433335541|gb|AGB34164.1| mitochondrial alternative oxidase 1c [Olea europaea subsp.
           europaea]
          Length = 353

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 27/181 (14%)

Query: 113 LYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIM 172
            ++ R      +LET+A VP      +LH+     +     ++K    E+ NE  HL+  
Sbjct: 147 FFQRRHMCHAMLLETVAAVPGMVGGMLLHLKSIRRFEHSGGWIKALLEEAENERMHLMTF 206

Query: 173 EELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF-I 228
            EL     W+ R   F  Q +    YFV+   YV+SP++A+     +E  A  +Y +F I
Sbjct: 207 LELSQPK-WYQRALVFAVQGVFANAYFVS---YVVSPKLAHRIVGYLEEEAVNSYTEFLI 262

Query: 229 KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAE 288
             +   ++  PAPA+AI Y+                   + P    L DV   IR DEA 
Sbjct: 263 DLEKGLVENRPAPAIAIDYW-------------------QLPSESTLKDVVTVIRADEAH 303

Query: 289 H 289
           H
Sbjct: 304 H 304


>gi|302790461|ref|XP_002976998.1| hypothetical protein SELMODRAFT_175925 [Selaginella moellendorffii]
 gi|300155476|gb|EFJ22108.1| hypothetical protein SELMODRAFT_175925 [Selaginella moellendorffii]
          Length = 264

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 80/189 (42%), Gaps = 39/189 (20%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYLKVHFAESWN 164
           D L+R R   R  +LETI+ VP      VLH      +  S GW      +K    E+ N
Sbjct: 50  DLLFRQRYICRAAMLETISGVPGMVGGMVLHCKSLRRVEHSGGW------IKALMEEAEN 103

Query: 165 EMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221
           E  HL+   EL   +W  +R   F AQ + +  YF+   +YV+SPR A+  +  +     
Sbjct: 104 ERMHLMTFMELSKPSWQ-ERALVFTAQGMFMNAYFL---LYVVSPRFAHRMAGYIREETI 159

Query: 222 ETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           ++Y + I      K+    AP +AI Y+                   R P    L DV +
Sbjct: 160 QSYTQLINDIDDGKVPNASAPDLAIDYW-------------------RLPIDATLRDVVM 200

Query: 281 NIRDDEAEH 289
            IR DE  H
Sbjct: 201 VIRADEIHH 209


>gi|302509494|ref|XP_003016707.1| hypothetical protein ARB_04999 [Arthroderma benhamiae CBS 112371]
 gi|291180277|gb|EFE36062.1| hypothetical protein ARB_04999 [Arthroderma benhamiae CBS 112371]
          Length = 357

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H++      R   +++    E++NE  HLL   +L     
Sbjct: 155 RFVFLETVAGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPG- 213

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKK-- 237
           WF R +       ++      Y+ISPR  + F   +E  A  TY   IK  +  KL    
Sbjct: 214 WFMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWT 273

Query: 238 -MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +PAP +AIKY+               +P       + + D+   IR DEA+H
Sbjct: 274 DLPAPDIAIKYWN--------------MPKGN----QKMVDLLYYIRADEAKH 308


>gi|51701294|sp|Q9P959.2|AOX_EMENI RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|259487471|tpe|CBF86176.1| TPA: Alternative oxidase, mitochondrial Precursor (EC 1.-.-.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q9P959] [Aspergillus
           nidulans FGSC A4]
          Length = 354

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 32/190 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI---MEELGG 177
           RF  LE++A VP      + H+       R   +++    E++NE  HLL    M E G 
Sbjct: 152 RFVFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPG- 210

Query: 178 NAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGE 233
              WF R +       ++      Y+ISPR  + F   +E  A  TY + IK     +  
Sbjct: 211 ---WFMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLP 267

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
             +K+ AP +A+KY+              ++P   R     + D+ L +R DEA+H    
Sbjct: 268 HWEKLEAPEIAVKYW--------------KMPEGNR----TMKDLLLYVRADEAKH---R 306

Query: 294 KACQTHGNLR 303
           +   T GNL+
Sbjct: 307 EVNHTLGNLK 316


>gi|209694266|ref|YP_002262194.1| hypothetical protein VSAL_I0677 [Aliivibrio salmonicida LFI1238]
 gi|208008217|emb|CAQ78362.1| putative membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 212

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 33/208 (15%)

Query: 89  KWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVLH-M 142
           K   K  + +   +T+ +  +L+  Y  +   R  +LETIA VP      F  +  L  M
Sbjct: 10  KATTKMSERIAYKITQCLKFLLNIFYGSQYAKRAVILETIAAVPGMVAGMFNHLKALRRM 69

Query: 143 YESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMY 202
            +  GW R          E+ NE  HL+I  ++     W +R L       +  V  F+Y
Sbjct: 70  KDDEGWIREL------LNEAENERMHLMIFLDIA-KPRWIERTLVLLGQGVFMVVYSFIY 122

Query: 203 VISPRMAYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQT 261
           ++S ++A+      E  A ++Y +++ K     ++   AP +AI YY             
Sbjct: 123 LLSSKVAHRVVGYFEEEACKSYTEYLSKIDNGDVENEAAPQIAIDYY------------- 169

Query: 262 ARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +LPN        L DV L IRDDEA+H
Sbjct: 170 -QLPNDAL-----LRDVILKIRDDEAKH 191


>gi|350539127|ref|NP_001234120.1| alternative oxidase 1b [Solanum lycopersicum]
 gi|29465624|gb|AAK58483.1| alternative oxidase 1b [Solanum lycopersicum]
          Length = 318

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 27/181 (14%)

Query: 113 LYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIM 172
            ++ R      +LET+A VP      +LH      +     ++K    E+ NE  HL+  
Sbjct: 134 FFQRRHMCHAMLLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTF 193

Query: 173 EELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF-I 228
            EL  N  W++R   F  Q + V  YF+    Y+ SP++A+     +E  A  +Y +F I
Sbjct: 194 IEL-SNPKWYERALVFAVQGVFVNAYFIA---YLASPKLAHRIVGYLEEEAVNSYTEFLI 249

Query: 229 KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAE 288
             +    +  PAPA+AI Y+                   R P    L DV   IR DEA 
Sbjct: 250 DIEKGLFENSPAPAIAIDYW-------------------RLPADATLKDVVTVIRADEAH 290

Query: 289 H 289
           H
Sbjct: 291 H 291


>gi|15228729|ref|NP_188875.1| alternative oxidase 1B [Arabidopsis thaliana]
 gi|3913143|sp|O23913.1|AOX1B_ARATH RecName: Full=Ubiquinol oxidase 1b, mitochondrial; AltName:
           Full=Alternative oxidase 1b; Flags: Precursor
 gi|2506082|dbj|BAA22624.1| alternative oxidase [Arabidopsis thaliana]
 gi|9293871|dbj|BAB01774.1| alternative oxidase 1b precursor [Arabidopsis thaliana]
 gi|67633654|gb|AAY78751.1| mitochondrial alternative oxidase 1b [Arabidopsis thaliana]
 gi|332643105|gb|AEE76626.1| alternative oxidase 1B [Arabidopsis thaliana]
          Length = 325

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      ++H      + +   ++K    E+ NE  HL+
Sbjct: 139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLM 198

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+    W ++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 199 TFMEVAKPNW-YERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 257

Query: 231 -QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                ++ +PAPA+AI Y+                   R      L DV + +R DEA H
Sbjct: 258 LDNGNIENVPAPAIAIDYW-------------------RLEADATLRDVVMVVRADEAHH 298


>gi|407924740|gb|EKG17769.1| Alternative oxidase [Macrophomina phaseolina MS6]
          Length = 350

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 33/195 (16%)

Query: 116 DRDY-ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI--- 171
           +R Y  R   LE++A VP      + H++      R   +++    ES+NE  HLL    
Sbjct: 142 ERKYLQRNVFLESVAGVPGMVAAVLRHLHSMRRMKRDNGWIETLLEESYNERMHLLTFLK 201

Query: 172 MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-- 229
           M E G    WF R +       ++    F Y++SPR  + F   +E  A  TY + I+  
Sbjct: 202 MTEPG----WFMRLMVLGAQGVFFNAMFFSYLVSPRTCHRFVGYLEEEAVLTYTREIEDL 257

Query: 230 --AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
              +    +KM AP +AI Y+              ++P   R     + D+ L IR DEA
Sbjct: 258 DAGRLPMWEKMQAPDIAIDYW--------------KMPEGNR----TMRDLLLYIRADEA 299

Query: 288 EHCKTMKACQTHGNL 302
           +H    +   T GNL
Sbjct: 300 KH---REVNHTLGNL 311


>gi|67523285|ref|XP_659703.1| hypothetical protein AN2099.2 [Aspergillus nidulans FGSC A4]
 gi|7415933|dbj|BAA93615.1| mitochondrial alternative oxidase [Emericella nidulans]
 gi|40745775|gb|EAA64931.1| hypothetical protein AN2099.2 [Aspergillus nidulans FGSC A4]
          Length = 351

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 32/191 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI---MEELGG 177
           RF  LE++A VP      + H+       R   +++    E++NE  HLL    M E G 
Sbjct: 149 RFVFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPG- 207

Query: 178 NAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGE 233
              WF R +       ++      Y+ISPR  + F   +E  A  TY + IK     +  
Sbjct: 208 ---WFMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLP 264

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
             +K+ AP +A+KY+              ++P   R     + D+ L +R DEA+H    
Sbjct: 265 HWEKLEAPEIAVKYW--------------KMPEGNR----TMKDLLLYVRADEAKH---R 303

Query: 294 KACQTHGNLRS 304
           +   T GNL+ 
Sbjct: 304 EVNHTLGNLKQ 314


>gi|425778082|gb|EKV16227.1| Alternative oxidase [Penicillium digitatum Pd1]
 gi|425780618|gb|EKV18624.1| Alternative oxidase [Penicillium digitatum PHI26]
          Length = 361

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 26/190 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 150 RFIFLESVAGVPGMVGGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPG- 208

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
           WF R +       ++      Y+ISPR+ + F   +E  A  TY + I+     +  + K
Sbjct: 209 WFMRLMVIGAQGVFFNGFFLAYLISPRICHRFVGYLEEEAVITYSRAIEELETGKLPEWK 268

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
            + AP +AIKY+              ++P  +R     + D+ L +R DEA+H    +  
Sbjct: 269 DLDAPEIAIKYW--------------QMPEGQR----QMRDLLLFVRADEAKH---REVN 307

Query: 297 QTHGNLRSPH 306
            T  NL+  H
Sbjct: 308 HTLANLKQTH 317


>gi|169770083|ref|XP_001819511.1| alternative oxidase [Aspergillus oryzae RIB40]
 gi|83767370|dbj|BAE57509.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391864037|gb|EIT73335.1| alternative oxidase [Aspergillus oryzae 3.042]
          Length = 353

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 29/196 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 151 RFVFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPG- 209

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
           WF R +       ++      Y++SPR+ + F   +E  A  TY + I+     +  K  
Sbjct: 210 WFMRLMVLGAQGVFFNGFFLSYLMSPRICHRFVGYLEEEAVLTYTRAIQDIEHGKLPKWT 269

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
           K+ AP +A++Y+              ++P  +R     + D+ + +R DEA+H    +  
Sbjct: 270 KLEAPEIAVQYW--------------KMPEGQR----TMKDLLMYVRADEAKH---REVN 308

Query: 297 QTHGNLRS---PHSYS 309
            T GNL     P+ YS
Sbjct: 309 HTLGNLNQAADPNPYS 324


>gi|224074535|ref|XP_002304386.1| predicted protein [Populus trichocarpa]
 gi|222841818|gb|EEE79365.1| predicted protein [Populus trichocarpa]
          Length = 253

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%)

Query: 113 LYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIM 172
            ++ R      +LET+A VP      +LH      + +   ++K    E+ NE  HL+  
Sbjct: 69  FFQRRHMCHAMLLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTF 128

Query: 173 EELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQ 231
            E+    W ++R L   +  A++      Y+ SP++A+     +E  A  +Y +F++   
Sbjct: 129 VEIAKPQW-YERALVFAVQGAFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYSEFLEDLD 187

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               + +PAPA+AI Y+                   R P    L DV   IR DEA H
Sbjct: 188 NGNFENVPAPAIAIDYW-------------------RLPPNSTLRDVVFVIRADEAHH 226


>gi|452981520|gb|EME81280.1| hypothetical protein MYCFIDRAFT_211800 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 341

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 88/198 (44%), Gaps = 39/198 (19%)

Query: 116 DRDYA-RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI--- 171
           +R Y  R   LE++A VP      + H++      R   +++    ES+NE  HLL    
Sbjct: 131 ERKYMIRNIFLESVAGVPGMVAGMLRHLHSMRRMKRDHGWIETLLEESYNERMHLLTFLK 190

Query: 172 MEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
           M E G    WF RF+   AQ +    +FV+   Y+ISPR  + F   +E  A  TY + I
Sbjct: 191 MAEPG----WFMRFMVLGAQGVFFNAFFVS---YLISPRTCHRFVGLLEEEAVITYTREI 243

Query: 229 ----KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
                 +    +KM AP +A+KY+               +P   R     + D+ L IR 
Sbjct: 244 ADLDAGRLPMWEKMQAPDIAVKYWN--------------MPEGHR----TMRDLLLYIRA 285

Query: 285 DEAEHCKTMKACQTHGNL 302
           DE++H    +   T GNL
Sbjct: 286 DESKH---REVNHTLGNL 300


>gi|327303204|ref|XP_003236294.1| alternative oxidase [Trichophyton rubrum CBS 118892]
 gi|326461636|gb|EGD87089.1| alternative oxidase [Trichophyton rubrum CBS 118892]
          Length = 357

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H++      R   +++    E++NE  HLL   +L     
Sbjct: 155 RFVFLETVAGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPG- 213

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKK-- 237
           WF R +       ++      Y+ISPR  + F   +E  A  TY   IK  +  KL    
Sbjct: 214 WFMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWT 273

Query: 238 -MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +PAP +AIKY+               +P       + + D+   IR DEA+H
Sbjct: 274 DLPAPDIAIKYWN--------------MPKGN----QKMVDLLYYIRADEAKH 308


>gi|302782061|ref|XP_002972804.1| hypothetical protein SELMODRAFT_232012 [Selaginella moellendorffii]
 gi|300159405|gb|EFJ26025.1| hypothetical protein SELMODRAFT_232012 [Selaginella moellendorffii]
          Length = 302

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 116 DIFFQRRYGCRAMMLETVAGVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 170

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      YV+ PR+A+     +E  A  +Y 
Sbjct: 171 RMHLMTFMEVV-QPKWYERALVFTVQGVFFNAYFLCYVLFPRLAHRIVGYLEEEAIHSYT 229

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K      +   PAPA+AI Y+                   R PK   + DV   +R 
Sbjct: 230 EYLKEIDKGTIPNAPAPAIAIDYW-------------------RLPKDAKMRDVVEVVRA 270

Query: 285 DEAEH 289
           DEA H
Sbjct: 271 DEAHH 275


>gi|51860697|gb|AAU11468.1| mitochondrial alternative oxidase 1b [Saccharum officinarum]
          Length = 285

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 27/192 (14%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAE 161
           L +S+++     ++ R  +   +LET+A VP      +LH+     +     +++    E
Sbjct: 90  LVKSLVVPKQLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSDGWIRALLEE 149

Query: 162 SWNEMHHLLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVES 218
           + NE  HL+   E+    WW +R L   AQ +    YFV    Y+ SP+ A+ F   +E 
Sbjct: 150 AENERMHLMTFLEVAQPKWW-ERALVLAAQGVYFNAYFVA---YLASPKFAHRFVGYLEE 205

Query: 219 HAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYD 277
            A  +Y +++K  +   +   P PA+AI Y+                   R P    L D
Sbjct: 206 EAVHSYTEYLKDLEAGIIDNTPVPAIAIDYW-------------------RLPADAKLKD 246

Query: 278 VFLNIRDDEAEH 289
           V   +R DEA H
Sbjct: 247 VVTIVRADEAHH 258


>gi|387593301|gb|EIJ88325.1| alternative oxidase superfamily protein [Nematocida parisii ERTm3]
 gi|387595986|gb|EIJ93608.1| alternative oxidase superfamily protein [Nematocida parisii ERTm1]
          Length = 232

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 22/186 (11%)

Query: 108 MVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMH 167
           M+ D ++  R   R  VLET+A +P      + H+ +S    +    +++  AE+ NE  
Sbjct: 56  MIADVVFYRRYVHRAIVLETVAAIPGMVGGVIRHL-KSLRNMKDDSNIRILLAEAENERM 114

Query: 168 HLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
           HL+   E+       +R +   +   ++   + +Y+IS R A+     +E  A  +Y + 
Sbjct: 115 HLMTWMEV-AKPLLIERLIVMGLQGVFFNAYLLLYLISKRTAHRLVGYLEEEAIISYTEM 173

Query: 228 IK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           +K  +   +  +PAP +A KY+               LP++       L DV L IR DE
Sbjct: 174 VKEIEAGIIPNVPAPEIAKKYWN--------------LPSN-----ATLLDVTLAIRADE 214

Query: 287 AEHCKT 292
           A H  T
Sbjct: 215 ATHRDT 220


>gi|330446299|ref|ZP_08309951.1| alternative oxidase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490490|dbj|GAA04448.1| alternative oxidase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 211

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 29/202 (14%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRA 152
           K  + +   +T+ +   L+  Y  +   R  +LETIA VP      V  M+      RR 
Sbjct: 13  KISERLAYKITQLLKFSLNIFYGKKYAKRAVILETIAAVPGM----VAGMFNHLKALRRM 68

Query: 153 ----DYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
                ++K   +E+ NE  HL+I  ++   +W  +R L       +  V   +Y+ S ++
Sbjct: 69  KDDEGWIKELLSEADNERMHLMIFLDIAKPSW-IERGLVLLGQAVFICVYSIIYLCSSKI 127

Query: 209 AYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+      E  A ++Y +F+ K    KL+ + AP +AIKYY   D         ARL   
Sbjct: 128 AHRVVGYFEEEACKSYTEFLEKIDSGKLENVAAPDIAIKYYQLQD--------DARLR-- 177

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
                    DV L IR+DEA+H
Sbjct: 178 ---------DVVLRIREDEAKH 190


>gi|24061751|gb|AAN39883.1| mitochondrial alternative oxidase [Emericella nidulans]
          Length = 354

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 26/187 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE   LL   ++ G  W
Sbjct: 152 RFVFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERLFLLTFLKMAGPGW 211

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
            F R +       ++      Y+ISPR  + F   +E  A  TY + IK     +    +
Sbjct: 212 -FMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWE 270

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
           K+ AP +A+KY+              ++P   R     + D+ L +R DEA+H    +  
Sbjct: 271 KLEAPEIAVKYW--------------KMPEGNR----TMKDLLLYVRADEAKH---REVN 309

Query: 297 QTHGNLR 303
            T GNL+
Sbjct: 310 HTLGNLK 316


>gi|440633254|gb|ELR03173.1| hypothetical protein GMDG_05999 [Geomyces destructans 20631-21]
          Length = 388

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 34/191 (17%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI---MEELGG 177
           RF  LE++A VP      + H+       R   +++    E++NE  HLL    M E G 
Sbjct: 184 RFLFLESVAGVPGMVAGMLRHLSSLRRMQRDNGWIETLLEEAYNERMHLLTFLKMAEPG- 242

Query: 178 NAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-AQGEKL 235
              WF R +    A   +F ++F+ Y+ISPR A+ F   +E  A  TY   +   +  KL
Sbjct: 243 ---WFMRLMCLG-AQGVFFNSMFVAYLISPRTAHRFVGYLEEEAVLTYSLVLADLEAGKL 298

Query: 236 KK---MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292
            K   + AP +AI+Y+              ++P  +R     + D+ L +R DEA+H   
Sbjct: 299 PKWEGLQAPDIAIEYW--------------KMPEGKR----TVKDLILYVRADEAKH--- 337

Query: 293 MKACQTHGNLR 303
            +   T GNL+
Sbjct: 338 REVNHTLGNLK 348


>gi|449300077|gb|EMC96090.1| hypothetical protein BAUCODRAFT_148923 [Baudoinia compniacensis
           UAMH 10762]
          Length = 457

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 26/203 (12%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H++      R   +++    ES+NE  HLL   ++     
Sbjct: 252 RFIFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIETLLEESYNERMHLLTFMKM-AEPG 310

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
           WF R +       ++      Y++SP+  + F   +E  A  TY + +      +     
Sbjct: 311 WFLRLMVLGAQGVFFNGMFLFYLVSPKTCHRFVGYLEEEAVYTYSRVLSDIDAGKLPMFS 370

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
           +M AP +A+KY+               +P   R    ++ D+ L IR DE++H    +  
Sbjct: 371 QMQAPDIAVKYWN--------------MPEDHR----SMRDLILYIRADESKH---REVN 409

Query: 297 QTHGNLRSPHSYSEDDFGCEDES 319
            T GNL   +  +  +   +DES
Sbjct: 410 HTLGNLDQKNDPNPYNSKYKDES 432


>gi|296813341|ref|XP_002847008.1| alternative oxidase [Arthroderma otae CBS 113480]
 gi|238842264|gb|EEQ31926.1| alternative oxidase [Arthroderma otae CBS 113480]
          Length = 358

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H++      R   +++    E++NE  HLL   +L     
Sbjct: 156 RFVFLETVAGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPG- 214

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKL---K 236
           WF R +       ++      Y+ISPR  + F   +E  A  TY   IK  +  KL    
Sbjct: 215 WFMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWS 274

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +PAP +AIKY+               +P       + + D+   +R DEA+H
Sbjct: 275 DLPAPDIAIKYWN--------------MPEGH----QKMLDLLYYVRADEAKH 309


>gi|320587810|gb|EFX00285.1| alternative oxidase [Grosmannia clavigera kw1407]
          Length = 823

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 83/194 (42%), Gaps = 40/194 (20%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI---MEELGG 177
           RF  LE+IA VP      + H+       R   +++    ES+NE  HLL    M E G 
Sbjct: 623 RFIFLESIAGVPGMVAGMLRHLRSIRQLKRDNGWIETLLEESFNERMHLLTFLKMCEPG- 681

Query: 178 NAWWFDRFLAQHI--AVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK---AQ 231
                 RF+   I  A   YF  +F+ Y+ISPR+ + F   +E  A  TY + +    A 
Sbjct: 682 ------RFMKLMILGAQGVYFNAMFLSYLISPRICHRFVGYLEEEAVHTYTRCLAEMDAG 735

Query: 232 GEKLKKMPA---PAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAE 288
           G  L   PA   P +A+KY+               +P  RR     + D+ L IR DEA 
Sbjct: 736 GTPLWSDPAFKVPEIAVKYW--------------HMPEDRR----TMKDLILYIRADEAS 777

Query: 289 HCKTMKACQTHGNL 302
           H        T GNL
Sbjct: 778 H---RGVNHTLGNL 788


>gi|452840505|gb|EME42443.1| hypothetical protein DOTSEDRAFT_175510 [Dothistroma septosporum
           NZE10]
          Length = 342

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 88/198 (44%), Gaps = 39/198 (19%)

Query: 116 DRDYA-RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI--- 171
           +R Y  R   LE++A VP      + H+       R   +++    ES+NE  HLL    
Sbjct: 131 ERKYMIRNIFLESVAGVPGMVAGMLRHLRSMRTMKRDNGWMESLLEESYNERMHLLTFLK 190

Query: 172 MEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
           M E G    WF RFL   AQ +    +FV+   Y++SP+  + F   +E  A  TY + I
Sbjct: 191 MAEPG----WFMRFLVLGAQGVFFNAFFVS---YLVSPKTCHRFVGYLEEEAVLTYTREI 243

Query: 229 K----AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +     +  K  +M AP +A+KY+               +P   R     + D+ L IR 
Sbjct: 244 EDIDAGRLPKWSQMEAPEIAVKYWN--------------MPEGHR----TMRDLLLYIRA 285

Query: 285 DEAEHCKTMKACQTHGNL 302
           DE++H    +   T GNL
Sbjct: 286 DESKH---REVNHTLGNL 300


>gi|111607217|dbj|BAF02775.1| alternative oxidase [Lactuca sativa]
          Length = 228

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 31/185 (16%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 42  DVFFQKRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEPSGGW-----IKALLEEAENE 96

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
             HL+   E+     W++R L   +   ++      Y+ SP++A+     +E  A  +Y 
Sbjct: 97  RMHLMTFMEVS-KPRWYERALVFTVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAIHSYT 155

Query: 226 KFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+K   +  ++ + APA+AI Y+                   R P    L DV + +R 
Sbjct: 156 EFLKELDKGTIENVKAPAIAIDYW-------------------RLPADSTLRDVVMVVRA 196

Query: 285 DEAEH 289
           DEA H
Sbjct: 197 DEAHH 201


>gi|208436648|gb|ACI28870.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 199

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 27/202 (13%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           +KF         +++ +     ++ +      +LET+A VP      +LH      + + 
Sbjct: 20  VKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVPGMVGGMLLHCQSPRRFEQS 79

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRM 208
             ++K    E+ NE  HL+   EL     W++R   F  Q +    YF+T   Y+ SP++
Sbjct: 80  GGWIKALLEEAENERMHLMTFIELAKPQ-WYERAIVFAVQGVFFNAYFLT---YLASPKV 135

Query: 209 AYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+  +  +E  A  +Y +F+K       + +PAPA+AI Y+                   
Sbjct: 136 AHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYW------------------- 176

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
           R P    L DV   IR DEA H
Sbjct: 177 RLPAESTLRDVVEVIRADEAHH 198


>gi|171676978|ref|XP_001903441.1| hypothetical protein [Podospora anserina S mat+]
 gi|51701291|sp|Q9C206.1|AOX_PODAS RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|14280024|gb|AAK58849.1|AF321004_1 alternate oxidase precursor [Podospora anserina]
 gi|12584590|emb|CAC27396.1| alternative oxidase [Podospora anserina]
 gi|170936556|emb|CAP61216.1| unnamed protein product [Podospora anserina S mat+]
          Length = 363

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 27/205 (13%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           IK EQ V+     + +     L   +   RF  LE+IA VP      + H+       R 
Sbjct: 131 IKPEQQVDKSNPTTAVAAQKPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLESLRRLKRD 190

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAY 210
             +++    ES+NE  HLL   ++    W+    +    A   +F  +F+ Y+ISPR+ +
Sbjct: 191 NGWIETLLEESYNERMHLLTFMKMCEPGWFMKTMILG--AQGVFFNAMFLSYLISPRITH 248

Query: 211 HFSECVESHAFETYDKFIK--AQGEKLK----KMPAPAVAIKYYTGGDLYLFDEFQTARL 264
            F   +E  A  TY + I+   QG+  K        P +A+ Y+              ++
Sbjct: 249 RFVGYLEEEAVHTYTRCIREIEQGDLPKWSDPNFQIPDLAVTYW--------------KM 294

Query: 265 PNSRRPKIENLYDVFLNIRDDEAEH 289
           P  +R     + D+ L IR DEA H
Sbjct: 295 PEGKR----TMRDLILYIRADEAVH 315


>gi|302760025|ref|XP_002963435.1| hypothetical protein SELMODRAFT_80767 [Selaginella moellendorffii]
 gi|300168703|gb|EFJ35306.1| hypothetical protein SELMODRAFT_80767 [Selaginella moellendorffii]
          Length = 320

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 32/184 (17%)

Query: 113 LYRDRDYA-RFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNEM 166
           L+  R Y  R  +LET+A VP      +LH      +E  G W     +K    E+ NE 
Sbjct: 135 LFLQRRYGCRAMMLETVAAVPGMVGGMLLHCRSLRRFEHSGGW-----IKALLEEAENER 189

Query: 167 HHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDK 226
            HL+   E+     W++R L   +   ++   +  Y+  PR+A+     +E  A  +Y +
Sbjct: 190 MHLMTFMEVV-QPKWYERALVFAVQGVFFNAYMVCYIAFPRLAHRIVGYLEEEAIHSYTE 248

Query: 227 FIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDD 285
           +IK      +   PAPA+AI Y+                   R PK   + DV   +R D
Sbjct: 249 YIKEIDKGNIPNTPAPAIAIDYW-------------------RLPKDAKIRDVVQVVRAD 289

Query: 286 EAEH 289
           EA H
Sbjct: 290 EAHH 293


>gi|257481064|gb|ACV60641.1| mitochondrial alternative oxidase 2 [Pinus pinea]
          Length = 147

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 21/163 (12%)

Query: 128 IARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLA 187
           +A VP      +LH+     +     ++K    E+ NE  HL+ M EL     W +R L 
Sbjct: 1   VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELV-QPKWHERLLV 59

Query: 188 QHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL-KKMPAPAVAIK 246
             +   ++     +Y++SP++A+     +E  A  ++ +++K     L + +PAPA++I 
Sbjct: 60  LAVQGVFFNAFFVLYILSPKLAHRIVGYLEEEAIHSHTEYLKDIDRGLIENVPAPAISID 119

Query: 247 YYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           Y+                   R P+   L DV L IR DEA H
Sbjct: 120 YW-------------------RLPQDAKLRDVILVIRADEAHH 143


>gi|116196868|ref|XP_001224246.1| hypothetical protein CHGG_05032 [Chaetomium globosum CBS 148.51]
 gi|88180945|gb|EAQ88413.1| hypothetical protein CHGG_05032 [Chaetomium globosum CBS 148.51]
          Length = 368

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 27/205 (13%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           I  EQ V++    + +     L   +   R   LE+IA VP      + H++      R 
Sbjct: 136 IGREQQVDMKNPTTAVAAEKPLTEAQWLVRVIFLESIAGVPGMVGGMLRHLHSLRRLKRD 195

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAY 210
             +++    ES+NE  HL+ + ++    W+    +    A   +F  +F+ Y++SP++ +
Sbjct: 196 NGWIETLLEESFNERMHLMTLMKMAEVGWFMKTMILG--AQGVFFNAMFLSYLVSPKITH 253

Query: 211 HFSECVESHAFETYDKFIK--AQGEKLK-KMPA---PAVAIKYYTGGDLYLFDEFQTARL 264
            F   +E  A  TY + ++   QG+  K   PA   P +AI Y+              R+
Sbjct: 254 RFVGYLEEEAVHTYTRLLREIEQGDLPKWSDPAFQIPEIAITYW--------------RM 299

Query: 265 PNSRRPKIENLYDVFLNIRDDEAEH 289
           P  +R     + D+ L IR DEA H
Sbjct: 300 PEGKR----TMKDLILYIRADEAVH 320


>gi|346978317|gb|EGY21769.1| alternative oxidase [Verticillium dahliae VdLs.17]
          Length = 354

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 131/313 (41%), Gaps = 49/313 (15%)

Query: 5   LSQTVSVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQD---EEEKV 61
           L++ V++ S+  I++  +    T++T     PSS     RNF    A+ L+D    +E  
Sbjct: 19  LARVVALSSSGHISI--LGHPATLRTTTLYRPSS----QRNFSSTPASRLRDFFPAKETE 72

Query: 62  VVEESSP------------LKNFPNDDEPPETGSASA-----LEKWV------IKFEQSV 98
            + +++P            L   P    P   G  +A     + +W       +K EQ V
Sbjct: 73  QIRKTAPAWPHEGYSEADMLAVVPGHRVPETWGDWAAWKFVRVARWTMDRATGLKPEQQV 132

Query: 99  NILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVH 158
           +     + ++  + L   +   RF  LE+IA VP      + H+       R   +++  
Sbjct: 133 DKKNPTTAVVANEPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIETL 192

Query: 159 FAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVE 217
             ES+NE  HLL   ++    W+    L    A   +F  +F+ Y++SP++ + F   +E
Sbjct: 193 LEESYNERMHLLTFMKMSEPGWFMKVMLIG--AQGVFFNGMFLSYLVSPKITHRFVGYLE 250

Query: 218 SHAFETYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLY 276
             A  TY + I+   E +L K   P   I      DL +    Q   +P  +R     + 
Sbjct: 251 EEAVHTYSRCIREIEEGQLPKWSDPNFNIP-----DLAV----QYWNIPEGKR----TMR 297

Query: 277 DVFLNIRDDEAEH 289
           D+ L IR DEA H
Sbjct: 298 DLILYIRADEAVH 310


>gi|326471371|gb|EGD95380.1| alternative oxidase [Trichophyton tonsurans CBS 112818]
 gi|326479484|gb|EGE03494.1| alternative oxidase [Trichophyton equinum CBS 127.97]
          Length = 357

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H++      R   +++    E++NE  HLL   +L     
Sbjct: 155 RFVFLETVAGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLSFLKLAEPG- 213

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKK-- 237
           WF R +       ++      Y+ISPR  + F   +E  A  TY   IK  +  KL    
Sbjct: 214 WFMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWT 273

Query: 238 -MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +PAP +AIKY+               +P       + + D+   IR DEA+H
Sbjct: 274 DLPAPDIAIKYWN--------------MPKGN----QKIVDLLYYIRADEAKH 308


>gi|261195168|ref|XP_002623988.1| alternative oxidase [Ajellomyces dermatitidis SLH14081]
 gi|239587860|gb|EEQ70503.1| alternative oxidase [Ajellomyces dermatitidis SLH14081]
 gi|239610651|gb|EEQ87638.1| alternative oxidase [Ajellomyces dermatitidis ER-3]
 gi|327348915|gb|EGE77772.1| alternative oxidase [Ajellomyces dermatitidis ATCC 18188]
          Length = 358

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 29/176 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 156 RFIFLETVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAEPG- 214

Query: 181 WFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLK 236
           WF R +   AQ +    +F++   Y+ISPR  + F   +E  A  TY   IK  +  KL 
Sbjct: 215 WFMRLMVLGAQGVFFNSFFIS---YLISPRTCHRFVGYLEEEAVMTYTHAIKDLEAGKLP 271

Query: 237 ---KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                PAP +A++Y+              ++P  +R     + D+   IR DEA+H
Sbjct: 272 NWANQPAPDIAVEYW--------------KMPEGKR----TILDLLYYIRADEAKH 309


>gi|70989575|ref|XP_749637.1| alternative oxidase AlxA [Aspergillus fumigatus Af293]
 gi|66847268|gb|EAL87599.1| alternative oxidase AlxA, putative [Aspergillus fumigatus Af293]
 gi|159129043|gb|EDP54157.1| alternative oxidase AlxA, putative [Aspergillus fumigatus A1163]
          Length = 352

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 29/196 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 150 RFIFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPG- 208

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
           WF R +       ++      Y+ISPR  + F   +E  A  TY + IK     +    +
Sbjct: 209 WFMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVITYTRAIKDIETGKLPDWE 268

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
           K+ AP +A++Y+               +P  +R     + D+ L +R DEA+H    +  
Sbjct: 269 KLDAPEIAVQYWN--------------MPEGQR----KMRDLLLYVRADEAKH---REVN 307

Query: 297 QTHGNLR---SPHSYS 309
            T GNL+    P+ Y+
Sbjct: 308 HTLGNLQHNVDPNPYA 323


>gi|6967043|emb|CAB72441.1| alternative oxidase [Populus tremula x Populus tremuloides]
          Length = 294

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 21/178 (11%)

Query: 113 LYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIM 172
            ++ R      +LET+A VP      +LH      + +   ++K    E+ NE  HL+  
Sbjct: 110 FFQRRHMCHAMLLETVAAVPGMVGGMLLHFKSLRRFEQSGGWIKALLEEAENERMHLMTF 169

Query: 173 EELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQG 232
            E+     W++R L   +   ++      Y+ SP++A+     +E  A  +Y +F++   
Sbjct: 170 VEIAKPQ-WYERALVFAVQGVFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYSEFLEDLD 228

Query: 233 E-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               + +PAPA+AI Y+                   R P    L DV   IR DEA H
Sbjct: 229 NCSFENVPAPAIAIDYW-------------------RLPPNSTLRDVVFVIRADEAHH 267


>gi|389630020|ref|XP_003712663.1| alternative oxidase [Magnaporthe oryzae 70-15]
 gi|51701271|sp|O93788.1|AOX_MAGO7 RecName: Full=Alternative oxidase, mitochondrial; AltName:
           Full=AOXMg; AltName: Full=MgAOX; Flags: Precursor
 gi|12240249|gb|AAG49588.1|AF325683_1 alternative terminal oxidase [Magnaporthe grisea]
 gi|3928513|dbj|BAA34672.1| alternative oxidase [Magnaporthe grisea]
 gi|351644995|gb|EHA52856.1| alternative oxidase [Magnaporthe oryzae 70-15]
          Length = 377

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 92/227 (40%), Gaps = 27/227 (11%)

Query: 95  EQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADY 154
           +Q +N     + I+    L   +  +RF  LE+IA VP      + H++      R   +
Sbjct: 125 QQQINKGSPTTSIVAAKPLTEAQWLSRFIFLESIAAVPGMVAGMLRHLHSLRRLKRDNGW 184

Query: 155 LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFS 213
           ++    E++NE  HLL   ++    W     +    A   YF  +F+ Y+ISP++ + F 
Sbjct: 185 IETLLEEAYNERMHLLTFLKMCEPGWLMKILIIG--AQGVYFNAMFVAYLISPKICHRFV 242

Query: 214 ECVESHAFETYDKFIK--AQGEKLK----KMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
             +E  A  TY + I+   +G+  K    K   P +A+ Y+               +P  
Sbjct: 243 GYLEEEAVHTYTRSIEELERGDLPKWSDPKFQVPEIAVSYWG--------------MPEG 288

Query: 268 RRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFG 314
            R     + D+ L IR DEA H            +  P+ +  D  G
Sbjct: 289 HR----TMRDLLLYIRADEANHRGVHHTLGNLNQVEDPNPFVSDYKG 331


>gi|312885255|ref|ZP_07744933.1| alternative oxidase 1 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367114|gb|EFP94688.1| alternative oxidase 1 [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 210

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 31/200 (15%)

Query: 96  QSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVLHMYESFGWWR 150
           + + +L+T+ +   L+  Y  +   R  +LETIA VP      F  +  L   +  G W 
Sbjct: 15  EKIALLVTKLLKKTLNLFYGGKYARRAMLLETIAAVPGMVAGVFNHLKALRRMKDDGGW- 73

Query: 151 RADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAY 210
               +K    E+ NE  HL+I   +   +   +R L   I   +  +  F+Y++S + A+
Sbjct: 74  ----IKELLDEADNERMHLMIFLRITQPSI-IERALVMLIQFFFVLIYSFVYLLSSKTAH 128

Query: 211 HFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRR 269
                 E  A  +Y +FI K     ++  PAPA+AI+YY+  D                 
Sbjct: 129 RIVGYFEEEACNSYCEFIEKILDGTVENSPAPAIAIRYYSLQD----------------- 171

Query: 270 PKIENLYDVFLNIRDDEAEH 289
                L DV   IRDDEA+H
Sbjct: 172 --DAKLLDVLECIRDDEAKH 189


>gi|440469885|gb|ELQ38976.1| alternative oxidase [Magnaporthe oryzae Y34]
 gi|440482974|gb|ELQ63417.1| alternative oxidase [Magnaporthe oryzae P131]
          Length = 387

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 34/249 (13%)

Query: 80  ETGSASALEKWVI-------KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP 132
           +T S S L  W +         +Q +N     + I+    L   +  +RF  LE+IA VP
Sbjct: 113 KTDSRSLLHSWGMDKVSGLSSEQQQINKGSPTTSIVAAKPLTEAQWLSRFIFLESIAAVP 172

Query: 133 YFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAV 192
                 + H++      R   +++    E++NE  HLL   ++    W     +    A 
Sbjct: 173 GMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPGWLMKILIIG--AQ 230

Query: 193 AYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK--AQGEKLK----KMPAPAVAI 245
             YF  +F+ Y+ISP++ + F   +E  A  TY + I+   +G+  K    K   P +A+
Sbjct: 231 GVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWSDPKFQVPEIAV 290

Query: 246 KYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSP 305
            Y+               +P   R     + D+ L IR DEA H            +  P
Sbjct: 291 SYWG--------------MPEGHR----TMRDLLLYIRADEANHRGVHHTLGNLNQVEDP 332

Query: 306 HSYSEDDFG 314
           + +  D  G
Sbjct: 333 NPFVSDYKG 341


>gi|255932617|ref|XP_002557865.1| Pc12g10440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582484|emb|CAP80671.1| Pc12g10440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 362

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE+IA VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 151 RFVFLESIAGVPGMVGGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPG- 209

Query: 181 WFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGE 233
           WF R +   AQ +    +F++   Y+ISPR+ + F   +E  A  TY + I+        
Sbjct: 210 WFMRVMVIGAQGVFFNGFFLS---YLISPRICHRFVGYLEEEAVITYTRAIEELEAGNLP 266

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
           + K + AP +A+KY+              ++P  +R     + D+ L IR DEA+H +  
Sbjct: 267 EWKDLDAPEIAVKYW--------------QMPEGQR----KMKDLLLFIRADEAKHREVN 308

Query: 294 KACQTHGNLRSPHSY 308
                    + P+ Y
Sbjct: 309 HTLANLKPTQDPNPY 323


>gi|353244382|emb|CCA75783.1| related to alternative oxidase precursor, mitochondrial
           [Piriformospora indica DSM 11827]
          Length = 449

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 30/176 (17%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LETIA VP F    + H+    G  R   ++     E+ NE  HL+    L  +  
Sbjct: 237 RILFLETIAGVPGFFAAMIRHLRGLRGMKRDGGWIHTLLEEAENERMHLMTFMTLRQSGI 296

Query: 181 WFDRFLAQHIAVAYYFVTVFM--YVISPRMAYHFSECVESHAFETYDKFIK----AQGEK 234
           +F  F+   +A    F   F   Y++SPR  + F   +E  A  TY   I+     +  +
Sbjct: 297 FFRAFI---VAAQGVFANAFFLAYLVSPRTCHRFVGSLEEEATLTYTALIEDMEAGRVPE 353

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARL-PNSRRPKIENLYDVFLNIRDDEAEH 289
            K  PAP +AI Y+              RL PN+       L DV   +R DE  H
Sbjct: 354 WKDKPAPGIAIDYW--------------RLKPNA------TLLDVIYAVRSDETTH 389


>gi|406601822|emb|CCH46595.1| Alternative oxidase, mitochondrial [Wickerhamomyces ciferrii]
          Length = 352

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 87/211 (41%), Gaps = 37/211 (17%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE+IA VP      V H++      R   +++    E++NE  HLL   +L GN 
Sbjct: 146 TRVIFLESIAGVPGMVAAFVRHLHSIRLLKRDKAWIETLLDEAYNERMHLLTFMKL-GNP 204

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEK-- 234
            WF R   ++ Q +    +F+   +Y+I PR  + F   +E  A  TY   IK    K  
Sbjct: 205 SWFTRLIIYVGQGVFCNLFFL---IYLIRPRYCHRFVGYLEEEAVSTYTHLIKDLDAKRL 261

Query: 235 --LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292
                +  P +A  Y+T       DE  T R             D+ L +R DE++H   
Sbjct: 262 PRFDNVKLPEIAWVYWTS-----LDENSTFR-------------DLVLRVRADESKH--- 300

Query: 293 MKACQTHGNL-----RSPHSYSEDDFGCEDE 318
            +   T  NL     R+P +   D    ED+
Sbjct: 301 REVNHTLANLKQRKDRNPFALKIDGVPLEDQ 331


>gi|51701293|sp|Q9P429.1|AOX_VENIN RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|9454424|gb|AAF87802.1|AF279690_1 alternative oxidase [Venturia inaequalis]
          Length = 361

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 28/187 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE++A VP      + H++      R   +++    ES+NE  HLLI  +L    W
Sbjct: 159 RNVFLESVAGVPGMVAGMLRHLHSMRRMKRDHGWIETLLEESYNERMHLLIFLKLYEPGW 218

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDK-FIKAQGEKL--- 235
           +    LA   A   +F  +F+ Y+ISPR  + F   +E  A  TY +     +  KL   
Sbjct: 219 FMR--LAVLGAQGVFFNAMFLSYLISPRTCHRFVGYLEEEAVVTYTRELADLEAGKLPEW 276

Query: 236 KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKA 295
           + + AP +A+ YY               LP   R     + D+ L++R DEA+H    + 
Sbjct: 277 ETLAAPDIAVDYYN--------------LPEGHR----TMKDLLLHVRADEAKH---REV 315

Query: 296 CQTHGNL 302
             T GNL
Sbjct: 316 NHTLGNL 322


>gi|208436644|gb|ACI28868.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 205

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 27/202 (13%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           +KF         +++ +     ++ +      +LET+A VP      +LH      + + 
Sbjct: 26  VKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVPGMVGGMLLHCQSLRRFEQS 85

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRM 208
             ++K    E+ NE  HL+   EL    W ++R   F  Q +    YF+T   Y+ SP++
Sbjct: 86  GGWIKALLEEAENERMHLMTFIELAKPQW-YERALVFAVQGVFFNAYFLT---YLASPKV 141

Query: 209 AYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+  +  +E  A  +Y +F+K       + +PAPA+AI Y+                   
Sbjct: 142 AHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYW------------------- 182

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
           R P    L DV   IR DEA H
Sbjct: 183 RLPAESTLRDVVEVIRADEAHH 204


>gi|340960109|gb|EGS21290.1| hypothetical protein CTHT_0031430 [Chaetomium thermophilum var.
           thermophilum DSM 1495]
          Length = 221

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 27/177 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE+IA VP      + H+       R   +++    ES+NE  HLL    +    
Sbjct: 20  VRLIFLESIAGVPGMVAGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMRMAQPG 79

Query: 180 WWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK--AQGEKLK 236
           W+    +   ++   +F  +F+ Y+ISP++ + F   +E  A  TY + +    +G+  K
Sbjct: 80  WFMKTMII--LSQGVFFNALFLTYLISPKITHRFVGYLEEEAVHTYTRLLGEIERGDLPK 137

Query: 237 ----KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                 P P +AI+Y+              RLP  +R     + D+ + IR DEA H
Sbjct: 138 WSDPNFPVPQIAIEYW--------------RLPEGKR----TMKDLIMYIRADEAVH 176


>gi|71016790|ref|XP_758921.1| hypothetical protein UM02774.1 [Ustilago maydis 521]
 gi|46098452|gb|EAK83685.1| hypothetical protein UM02774.1 [Ustilago maydis 521]
          Length = 448

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 29/176 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE+IA VP     +  H+       R   ++     ++ NE  HLL+   L G   
Sbjct: 233 RMIFLESIAGVPGMVAATCRHLQSLRLMRRDKGWIHTMLEDAENERMHLLVALHLSGKPG 292

Query: 181 WFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE---- 233
              R    LAQ +   ++F+    Y++SPR+A+ F   +E  A  TY   ++   E    
Sbjct: 293 LIARTFVLLAQGVFYNFFFI---FYLLSPRVAHRFVGVLEEEAVLTYSLILEDLKEGRLP 349

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           + + +PAP +A +Y+  GD  +                   L DV   IR DEA H
Sbjct: 350 EWEDVPAPEIAKQYWQLGDEAM-------------------LVDVIRAIRADEATH 386


>gi|121710154|ref|XP_001272693.1| alternative oxidase AlxA, putative [Aspergillus clavatus NRRL 1]
 gi|119400843|gb|EAW11267.1| alternative oxidase AlxA, putative [Aspergillus clavatus NRRL 1]
          Length = 357

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 29/196 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 155 RFIFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPG- 213

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
           WF R +       ++      Y++SPR  + F   +E  A  TY + +K     +    +
Sbjct: 214 WFMRLMVLGAQGVFFNGFFLSYLVSPRTCHRFVGYLEEEAVITYTRALKDLETGKLPDWE 273

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
           K+ AP +A++Y+               +P   R     + D+ L IR DEA+H    +  
Sbjct: 274 KLEAPEIAVQYWN--------------MPEGHR----TMKDLLLYIRADEAKH---REVN 312

Query: 297 QTHGNLR---SPHSYS 309
            T GNL+    P+ Y+
Sbjct: 313 HTLGNLKHNLDPNPYA 328


>gi|302776856|ref|XP_002971569.1| hypothetical protein SELMODRAFT_231845 [Selaginella moellendorffii]
 gi|300160701|gb|EFJ27318.1| hypothetical protein SELMODRAFT_231845 [Selaginella moellendorffii]
          Length = 309

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 32/183 (17%)

Query: 114 YRDRDYA-RFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNEMH 167
           Y  R Y  R  +LET+A VP      +LH      +E  G W     +K    E+ NE  
Sbjct: 125 YWTRRYGCRAMMLETVAAVPGMVGGMLLHCRSLRRFEHSGGW-----IKALLEEAENERM 179

Query: 168 HLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
           HL+   E+     W++R L   +   ++   +  Y+  PR+A+     +E  A  +Y ++
Sbjct: 180 HLMTFMEVV-QPKWYERALVFAVQGVFFNAYMVCYIAFPRLAHRIVGYLEEEAIHSYTEY 238

Query: 228 IKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           IK      +   PAPA+AI Y+                   R PK   + DV   +R DE
Sbjct: 239 IKEIDKGNIPNTPAPAIAIDYW-------------------RLPKDAKIRDVVQVVRADE 279

Query: 287 AEH 289
           A H
Sbjct: 280 AHH 282


>gi|302662223|ref|XP_003022769.1| hypothetical protein TRV_03103 [Trichophyton verrucosum HKI 0517]
 gi|291186732|gb|EFE42151.1| hypothetical protein TRV_03103 [Trichophyton verrucosum HKI 0517]
          Length = 262

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H++      R   +++    E++NE  HLL   +L     
Sbjct: 60  RFVFLETVAGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNEHMHLLTFLKLAEPG- 118

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKL---K 236
           WF R +       ++      Y+ISPR  + F   +E  A  TY   IK  +  KL    
Sbjct: 119 WFMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWT 178

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +PAP +AIKY+               +P       + + D+   IR DEA+H
Sbjct: 179 DLPAPDIAIKYWN--------------MPKGN----QKMVDLLYYIRADEAKH 213


>gi|14599476|gb|AAK70936.1| alternative oxidase 1b [Mangifera indica]
          Length = 144

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 21/163 (12%)

Query: 125 LETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR 184
           LET+A VP      +LH      +     ++KV   E+ NE  HL+   E+     W++R
Sbjct: 1   LETVAAVPGTVGGMLLHCKSLRKFEHSGGWIKVLTEEAENERMHLMTFMEVA-KPRWYER 59

Query: 185 FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAV 243
            L   +   ++ V +  Y+ISP+ A+     +E  A  +Y +F+K   +  ++ +PAPA+
Sbjct: 60  ALILAVQGVFFNVYMLGYLISPKFAHRVVGYLEEEAILSYTEFLKELDKGNIENVPAPAI 119

Query: 244 AIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           AI Y+                   R P    L DV + +R DE
Sbjct: 120 AIDYW-------------------RLPPESTLRDVVIVVRADE 143


>gi|37955176|gb|AAP76379.1| alternative oxidase [Capsicum annuum]
          Length = 135

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 32/152 (21%)

Query: 140 LHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYF 196
           L  +E  G W     +K    E+ NE  HL+   E+    W ++R   F  Q +    YF
Sbjct: 12  LRRFEQSGGW-----IKALLEEAENERMHLMTFMEVAKPKW-YERALVFAVQGVFFNAYF 65

Query: 197 VTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYL 255
           VT   Y++SP++A+     +E  A  +Y +F+K      ++ +PAPA+AI Y+       
Sbjct: 66  VT---YILSPKLAHRIVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAIDYW------- 115

Query: 256 FDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
                       R PK   L DV L +R DEA
Sbjct: 116 ------------RLPKDSTLRDVVLVVRADEA 135


>gi|262348244|gb|ACY56340.1| alternative oxidase [Monascus ruber]
          Length = 350

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 25/194 (12%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRAD-YLKVHFAESWNEMHHLLIMEELGGNA 179
           RF  LE++A VP     ++ H+  S  + RR + +++    E++NE  HLL    +    
Sbjct: 148 RFIFLESVAGVPGMVGGTLRHL-RSLRFLRRDNGWIETLLEEAYNERMHLLTFLNVARPG 206

Query: 180 WWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI----KAQGEKL 235
             F R +       +Y      Y+ISPR+ + F   +E  A  TY + I    + +  + 
Sbjct: 207 -LFMRLMVLGAQGVFYNGFFLSYLISPRICHRFVGYLEEEAVITYTRVISDIEEGRVPEW 265

Query: 236 KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKA 295
             MPAP +A++Y+              ++P   R     + D+ L +R DEA+H +    
Sbjct: 266 ANMPAPEIAVQYW--------------KMPEGNR----TMKDLLLYVRADEAKHREVNHT 307

Query: 296 CQTHGNLRSPHSYS 309
                    P+ Y+
Sbjct: 308 LANLNQENDPNPYA 321


>gi|289208825|ref|YP_003460891.1| oxidase [Thioalkalivibrio sp. K90mix]
 gi|288944456|gb|ADC72155.1| Alternative oxidase [Thioalkalivibrio sp. K90mix]
          Length = 209

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 33/203 (16%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFG 147
           F   V    T  + +  D  +  R   R  VLET+A VP     ++ H      M +  G
Sbjct: 18  FSDRVARAFTSMMRLFADTFFARRYGHRAVVLETVAGVPGMVGATLQHLRSLRRMEDDHG 77

Query: 148 WWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPR 207
           W      ++    E+ NE  HLL   E+    W  +R L       +Y +   +YVISPR
Sbjct: 78  W------IRTLMEEAENERMHLLTFIEIASPNW-LERLLIILAQGFFYTLYFLIYVISPR 130

Query: 208 MAYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPN 266
            A+      E  A  +Y  ++ + +   ++ +PAP  AI+Y+   DL             
Sbjct: 131 TAHRIVGYFEEEAVISYTDYLEEVETGAIENIPAPDRAIQYW---DL------------- 174

Query: 267 SRRPKIENLYDVFLNIRDDEAEH 289
              P+   L DV   +R+DEA H
Sbjct: 175 ---PEDARLSDVIRAVREDEAGH 194


>gi|18176467|gb|AAL60049.1| At1g32350/F5D14.4 [Arabidopsis thaliana]
          Length = 317

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 22/166 (13%)

Query: 123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
            +LET+A VP      +LH+     +     ++K    E+ NE  HL+   EL    W +
Sbjct: 144 MLLETVA-VPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKW-Y 201

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAP 241
           +R +   +   ++      YVISP++A+  +  +E  A  +Y +F+K     K +  PAP
Sbjct: 202 ERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAP 261

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
           A+A+ Y+                   R PK   L DV   IR +EA
Sbjct: 262 AIAMDYW-------------------RFPKDATLRDVVYVIRAEEA 288


>gi|298714367|emb|CBJ27424.1| alternative oxidase isoform A [Ectocarpus siliculosus]
          Length = 422

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 28/176 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           R   LET+A +P     ++ H+       R   ++     E+ NE  HLL   +L   G 
Sbjct: 185 RVIFLETVAGIPGMVAGTLRHLTSLRRMRRDHGWIHTLLEEAENERMHLLTFLKLKQPGP 244

Query: 179 AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKL-- 235
            + F   ++Q +    +F++   Y+ISP+  + F   +E  A  TY   ++     KL  
Sbjct: 245 VFRFAVMISQGVMYNAFFLS---YLISPKACHRFVGYIEEEAVHTYTVLLEDIDANKLPL 301

Query: 236 -KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHC 290
              +PAPA+A  Y+  GD  +F                    D+ L +R DEA HC
Sbjct: 302 FSNLPAPAMAKSYWKLGDDAMF-------------------RDLVLAVRADEANHC 338


>gi|119480199|ref|XP_001260128.1| alternative oxidase AlxA, putative [Neosartorya fischeri NRRL 181]
 gi|119408282|gb|EAW18231.1| alternative oxidase AlxA, putative [Neosartorya fischeri NRRL 181]
          Length = 345

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 29/196 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L    W
Sbjct: 143 RFVFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGW 202

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKL---K 236
            F R +       ++      Y+ISPR  + F   +E  A  TY + IK  +  KL   +
Sbjct: 203 -FMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVITYTRAIKDIEAGKLPDWE 261

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
           ++ AP +A++Y+               +P  +R     + D+ L +R DEA+H    +  
Sbjct: 262 ELDAPEIAVQYWN--------------MPEGQR----KMKDLLLYVRADEAKH---REVN 300

Query: 297 QTHGNLR---SPHSYS 309
            T GNL+    P+ Y+
Sbjct: 301 HTLGNLQHNVDPNPYA 316


>gi|396466567|ref|XP_003837720.1| similar to alternative oxidase [Leptosphaeria maculans JN3]
 gi|312214283|emb|CBX94276.1| similar to alternative oxidase [Leptosphaeria maculans JN3]
          Length = 356

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 32/198 (16%)

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
           A+  ++   R   LE++A VP      + H++      R   +++    ES+NE  HLL+
Sbjct: 145 AMTEEKYLVRNVFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESFNERMHLLV 204

Query: 172 ---MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
              M++ G     F RF+       +     F Y++SPR  + F   +E  A  TY + I
Sbjct: 205 FLKMQKPGP----FMRFMVLVAQGVWCNALFFAYLLSPRTVHRFVGYLEEEAVITYTRQI 260

Query: 229 K----AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +     +  K +KM AP +A+ Y+               +P  RR     + D+ L IR 
Sbjct: 261 EDLDAGRLPKWEKMEAPEIAVDYW--------------HMPEGRR----TMRDLLLYIRA 302

Query: 285 DEAEHCKTMKACQTHGNL 302
           DE++H    +   T GNL
Sbjct: 303 DESKH---REVNHTFGNL 317


>gi|226292243|gb|EEH47663.1| alternative oxidase [Paracoccidioides brasiliensis Pb18]
          Length = 352

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 25/176 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 150 RFIFLETVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAKPG- 208

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKM 238
           WF R +    A   +F + FM Y+ISPR  + F   +E  A  TY   I   +  KL + 
Sbjct: 209 WFMRLMVLG-AQGVFFNSFFMAYLISPRTCHRFVGYLEEEAVMTYTHAINDLEAGKLPEW 267

Query: 239 P---APAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCK 291
               AP +A+ Y+               +P ++R     + D+   IR DEA+HC+
Sbjct: 268 ANKEAPDIAVAYW--------------HMPENKR----TILDLLYYIRADEAKHCE 305


>gi|115399176|ref|XP_001215177.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
 gi|114192060|gb|EAU33760.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
          Length = 355

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 26/187 (13%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L    
Sbjct: 152 TRFVFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAFNERMHLLTFLKLAEPG 211

Query: 180 WWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKL 235
           W F R +       ++      Y++SPR  + F   +E  A  TY + IK          
Sbjct: 212 W-FMRLMVLGAQGVFFNGFFLSYLVSPRTCHRFVGYLEEEAVITYTRAIKDLENGNLPLW 270

Query: 236 KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKA 295
           +K  AP +AI+Y+              ++P  +R     + D+ L +R DEA+H    + 
Sbjct: 271 EKKEAPEIAIQYW--------------KMPEGKR----TMKDLLLYVRADEAKH---REV 309

Query: 296 CQTHGNL 302
             T GNL
Sbjct: 310 NHTLGNL 316


>gi|358367171|dbj|GAA83790.1| alternative oxidase, mitochondrial [Aspergillus kawachii IFO 4308]
          Length = 351

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 26/186 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 149 RFIFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPG- 207

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
           WF R +       ++      Y++SPR+ + F   +E  A  TY + IK          +
Sbjct: 208 WFMRLMVLGAQGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPAWE 267

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
           K  AP +A++Y+              ++P  +R    ++ D+ L +R DEA+H    +  
Sbjct: 268 KTEAPEIAVQYW--------------KMPEGQR----SMKDLLLYVRADEAKH---REVN 306

Query: 297 QTHGNL 302
            T GNL
Sbjct: 307 HTLGNL 312


>gi|6226552|sp|O74180.2|AOX_ASPNG RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|4521101|dbj|BAA32033.2| alternative oxidase [Aspergillus niger]
 gi|9650909|dbj|BAB03469.1| alternative oxidase [Aspergillus niger]
          Length = 351

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 26/186 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 149 RFIFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPG- 207

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
           WF R +       ++      Y++SPR+ + F   +E  A  TY + IK          +
Sbjct: 208 WFMRLMVLGAQGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPAWE 267

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
           K  AP +A++Y+              ++P  +R    ++ D+ L +R DEA+H    +  
Sbjct: 268 KTEAPEIAVQYW--------------KMPEGQR----SMKDLLLYVRADEAKH---REVN 306

Query: 297 QTHGNL 302
            T GNL
Sbjct: 307 HTLGNL 312


>gi|170674869|gb|ACB30185.1| mitochondrial alternative oxidase 1a [Hypericum perforatum]
          Length = 147

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 27/166 (16%)

Query: 128 IARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR--- 184
           +A VP      +LH      +   A ++K    E+ NE  HL+   E+     W++R   
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFGHSAGWIKALLEEAENERMHLMTFMEVS-QPRWYERALV 59

Query: 185 FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAV 243
           F  Q +    YF+T   Y++SP++A+     +E  A  +Y +F+K   +  ++ +PAPA+
Sbjct: 60  FTVQGVFFNAYFLT---YLVSPKLAHRVVGYLEEEAIHSYTEFLKELDKGTIENVPAPAI 116

Query: 244 AIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           AI Y+                   R P    L DV + +R DEA H
Sbjct: 117 AIDYW-------------------RMPPNSTLRDVVMVVRADEAHH 143


>gi|118594227|ref|ZP_01551574.1| NADH:flavin oxidoreductase/NADH oxidase [Methylophilales bacterium
           HTCC2181]
 gi|118440005|gb|EAV46632.1| NADH:flavin oxidoreductase/NADH oxidase [Methylophilales bacterium
           HTCC2181]
          Length = 589

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 39/204 (19%)

Query: 98  VNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRR 151
           V + +T+ + ++ D  +  R   R  VLET+A VP       +H      M    GW   
Sbjct: 14  VALFITKFLRLLADTFFSKRYGHRAVVLETVAAVPGMVAGMWIHLKCLRKMTSDRGW--- 70

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRM 208
              +K    E+ NE  HL+   E+     WF+R L   AQ +   +YF+   +YV  PR 
Sbjct: 71  ---IKTLLDEAENERMHLMTFIEIA-KPNWFERGLILFAQALFWHFYFI---LYVFFPRT 123

Query: 209 AYHFSECVESHAFETYDKFIKAQGEKLK-KMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+      E  A  +Y  +++     L   + AP +AI Y+                P++
Sbjct: 124 AHRLVGYFEEEAVISYTNYLEQVENDLSLNVAAPQIAINYWK-------------LKPDA 170

Query: 268 RRPKIENLYDVFLNIRDDEAEHCK 291
           R      L DV   +RDDEA H K
Sbjct: 171 R------LIDVIKVVRDDEAGHAK 188


>gi|225681058|gb|EEH19342.1| alternative oxidase [Paracoccidioides brasiliensis Pb03]
          Length = 352

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 25/176 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 150 RFIFLETVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAKPG- 208

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKM 238
           WF R +    A   +F + FM Y+ISPR  + F   +E  A  TY   I   +  KL + 
Sbjct: 209 WFMRLMVLG-AQGVFFNSFFMAYLISPRTCHRFVGYLEEEAVMTYTHAINDLEAGKLPEW 267

Query: 239 P---APAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCK 291
               AP +A+ Y+               +P ++R     + D+   IR DEA+HC+
Sbjct: 268 ANKEAPDIAVAYW--------------HMPENKR----TILDLLYYIRADEAKHCE 305


>gi|59711185|ref|YP_203961.1| alternative oxidase 1 [Vibrio fischeri ES114]
 gi|59479286|gb|AAW85073.1| alternative oxidase 1 [Vibrio fischeri ES114]
          Length = 211

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 29/202 (14%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRA 152
           K  + +   +T+ +  +L+  Y  +   R  +LETIA VP      V  M+      RR 
Sbjct: 13  KISEKIAYKITQCLKFLLNIFYGSKYAKRAVILETIAAVPGM----VAGMFNHLKALRRM 68

Query: 153 D----YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
                +++   +E+ NE  HL+I  ++     W +R L       +  V  F+Y++S ++
Sbjct: 69  KDDQGWIQELLSEAENERMHLMIFLDIA-KPRWIERLLVLLGQAVFIVVYSFIYLLSSKI 127

Query: 209 AYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+      E  A ++Y +++    E  ++   AP +AI YY              +LP+ 
Sbjct: 128 AHRVVGYFEEEACKSYTEYLAKIDEGTVENEAAPQIAIDYY--------------QLPSD 173

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
                  L DV L IR+DEA+H
Sbjct: 174 -----AMLRDVILKIRNDEAKH 190


>gi|119947000|ref|YP_944680.1| alternative oxidase [Psychromonas ingrahamii 37]
 gi|119865604|gb|ABM05081.1| alternative oxidase [Psychromonas ingrahamii 37]
          Length = 211

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 33/195 (16%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYL 155
           +T+S+  +L+  Y  +   R  +LETIA VP      + H      M +  GW R     
Sbjct: 22  ITQSLKFMLNLFYGKKYAKRAVILETIAAVPGMVAGMLNHLKALRRMRDDQGWIREL--- 78

Query: 156 KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSEC 215
                E+ NE  HL+I  ++     W +R L       +  +  F+Y++S +  +     
Sbjct: 79  ---LDEAENERMHLMIFLDI-AKPTWIERTLVLLGQGIFLIIYTFLYILSSKTGHRVVGY 134

Query: 216 VESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIEN 274
            E  A ++Y +F+ K    +++ +PAP +A  YY        D+    R           
Sbjct: 135 FEEEACKSYSEFLQKIDAGEVENVPAPKIAKDYYA------LDDDACLR----------- 177

Query: 275 LYDVFLNIRDDEAEH 289
             DV L IR+DE +H
Sbjct: 178 --DVVLCIREDEGKH 190


>gi|38018226|gb|AAR08189.1| mitochondrial cyanide-resistant terminal oxidase [Penicillium
           chrysogenum]
          Length = 361

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 29/176 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 150 RFIFLESVAGVPGMVGGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPG- 208

Query: 181 WFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKLK 236
           WF R +   AQ +    +F++   Y+ISPR+ + F   +E  A  TY + I+  +  KL 
Sbjct: 209 WFMRLMVIGAQGVFFNGFFLS---YLISPRICHRFVGYLEEEAVITYTRAIEELEAGKLP 265

Query: 237 K---MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +   + AP +AIKY+              ++P  +R     + D+ + +R DEA+H
Sbjct: 266 QWDDLDAPEIAIKYW--------------QMPEGQR----KMKDLLMFVRADEAKH 303


>gi|85710461|ref|ZP_01041525.1| putative oxidase [Erythrobacter sp. NAP1]
 gi|85687639|gb|EAQ27644.1| putative oxidase [Erythrobacter sp. NAP1]
          Length = 232

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 35/187 (18%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYLKVHFAESWN 164
           D  +  R   R  VLET+A VP      + H      M +  GW      ++    E+ N
Sbjct: 45  DTFFARRYGHRAVVLETVAAVPGMVGGLLQHLRALRRMRDDEGW------IRTLLDEAEN 98

Query: 165 EMHHLLIMEELGG-NAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFET 223
           E  HL+   E+   NA  F+RFL   + + +Y    F+Y+++PR A+      E  A  +
Sbjct: 99  ERMHLMTFIEIAKPNA--FERFLILSVQLVFYNFYFFLYLLAPRTAHRVVGYFEEEAVIS 156

Query: 224 YDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNI 282
           Y  ++K  +  + + +PAP +AI Y+              +L +  R     L DV + +
Sbjct: 157 YTAYLKEVESGRHENVPAPQIAIDYW--------------QLHSDAR-----LSDVIIAV 197

Query: 283 RDDEAEH 289
           R DEAEH
Sbjct: 198 RADEAEH 204


>gi|148981866|ref|ZP_01816551.1| alternative oxidase [Vibrionales bacterium SWAT-3]
 gi|145960717|gb|EDK26058.1| alternative oxidase [Vibrionales bacterium SWAT-3]
          Length = 210

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 31/202 (15%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVLHMYESFGW 148
           F + V +L+T  +   L+  Y      R  +LETIA VP      F  +  L   +  G 
Sbjct: 13  FSEKVALLVTRLLKKTLNLFYGKHLAKRAMLLETIAAVPGMVAGVFNHLKALRRMKDDGG 72

Query: 149 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
           W     +K    E+ NE  HL+I   +   +   +R L   +   +  +   +Y++S + 
Sbjct: 73  W-----IKELLDEADNERMHLMIFLTVTKPSI-IERILVMLLQFIFLIIYGVIYLVSSKT 126

Query: 209 AYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+      E  A  +Y ++I K +   L   PAP +AI YY                   
Sbjct: 127 AHRIVGYFEEEACNSYSEYISKIEEGALPNHPAPEIAITYY------------------- 167

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
           R P+     DV   IR+DEA+H
Sbjct: 168 RLPEGATFLDVLFRIREDEAKH 189


>gi|225563182|gb|EEH11461.1| alternative oxidase [Ajellomyces capsulatus G186AR]
          Length = 357

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 29/176 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 155 RFIFLETVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPG- 213

Query: 181 WFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLK 236
           WF R +   AQ +    +F++   Y+ISPR  + F   +E  A  TY   IK  +  KL 
Sbjct: 214 WFMRLMVLGAQGVFFNGFFIS---YLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLP 270

Query: 237 ---KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                PAP +A+ Y+              ++P  +R     + D+   IR DEA+H
Sbjct: 271 NWANQPAPDIAVAYW--------------QMPEGKR----TILDLLYYIRADEAKH 308


>gi|197334925|ref|YP_002155335.1| alternative oxidase 2 [Vibrio fischeri MJ11]
 gi|197316415|gb|ACH65862.1| alternative oxidase 2 [Vibrio fischeri MJ11]
          Length = 211

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 29/202 (14%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRA 152
           K  + +   +T+ +  +L+  Y  +   R  +LETIA VP      V  M+      RR 
Sbjct: 13  KISEKIAYKITQCLKFLLNIFYGSKYAKRAVILETIAAVPGM----VAGMFNHLKALRRM 68

Query: 153 D----YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
                +++   +E+ NE  HL+I  ++     W +R L       +  V  F+Y++S ++
Sbjct: 69  KDDQGWIQELLSEAENERMHLMIFLDIA-KPRWIERLLVLLGQAVFIVVYSFIYLLSSKI 127

Query: 209 AYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+      E  A ++Y +++    E  ++   AP +AI YY              +LP+ 
Sbjct: 128 AHRVVGYFEEEACKSYTEYLAKIDEGAVENEAAPQIAIDYY--------------QLPSD 173

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
                  L DV L IR+DEA+H
Sbjct: 174 -----AMLRDVILKIRNDEAKH 190


>gi|444427732|ref|ZP_21223103.1| hypothetical protein B878_17259 [Vibrio campbellii CAIM 519 = NBRC
           15631]
 gi|444239030|gb|ELU50610.1| hypothetical protein B878_17259 [Vibrio campbellii CAIM 519 = NBRC
           15631]
          Length = 211

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 33/204 (16%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVL-HMYESF 146
           K  + V + +T+ +   L+  Y  +   R  +LETIA VP      F  +  L  M +  
Sbjct: 13  KLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRRMKDDE 72

Query: 147 GWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISP 206
           GW R          E+ NE  HL+I  ++   +   +R L       +  V  F+Y++S 
Sbjct: 73  GWIREL------LDEAENERMHLMIFLDIAKPS-LIERLLVLLGQGVFILVYSFIYLLSS 125

Query: 207 RMAYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLP 265
           ++A+      E  A  +Y +++ K    +++ +PAP +A+ YY                 
Sbjct: 126 KIAHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAVDYY----------------- 168

Query: 266 NSRRPKIENLYDVFLNIRDDEAEH 289
             + P    L DV L IR+DEA H
Sbjct: 169 --KLPADAMLRDVILRIREDEAGH 190


>gi|156973270|ref|YP_001444177.1| hypothetical protein VIBHAR_00951 [Vibrio harveyi ATCC BAA-1116]
 gi|388600478|ref|ZP_10158874.1| hypothetical protein VcamD_11319 [Vibrio campbellii DS40M4]
 gi|156524864|gb|ABU69950.1| hypothetical protein VIBHAR_00951 [Vibrio harveyi ATCC BAA-1116]
          Length = 211

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 33/204 (16%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVL-HMYESF 146
           K  + V + +T+ +   L+  Y  +   R  +LETIA VP      F  +  L  M +  
Sbjct: 13  KLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRRMKDDE 72

Query: 147 GWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISP 206
           GW R          E+ NE  HL+I  ++   +   +R L       +  V  F+Y++S 
Sbjct: 73  GWIREL------LDEAENERMHLMIFLDIAKPS-LIERLLVLLGQGVFILVYSFIYLLSS 125

Query: 207 RMAYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLP 265
           ++A+      E  A  +Y +++ K    +++ +PAP +A+ YY                 
Sbjct: 126 KIAHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAVDYY----------------- 168

Query: 266 NSRRPKIENLYDVFLNIRDDEAEH 289
             + P    L DV L IR+DEA H
Sbjct: 169 --KLPADAMLRDVILRIREDEAGH 190


>gi|424032045|ref|ZP_17771466.1| alternative oxidase family protein [Vibrio cholerae HENC-01]
 gi|408876457|gb|EKM15574.1| alternative oxidase family protein [Vibrio cholerae HENC-01]
          Length = 211

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 33/204 (16%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVL-HMYESF 146
           K  + V + +T+ +   L+  Y  +   R  +LETIA VP      F  +  L  M +  
Sbjct: 13  KLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRRMKDDE 72

Query: 147 GWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISP 206
           GW R          E+ NE  HL+I  ++   +   +R L       +  V  F+Y++S 
Sbjct: 73  GWIREL------LDEAENERMHLMIFLDIAKPS-LVERLLVLLGQGVFIVVYSFIYLLSS 125

Query: 207 RMAYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLP 265
           ++A+      E  A  +Y +++ K    +++ +PAP +AI YY              +LP
Sbjct: 126 KIAHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYY--------------KLP 171

Query: 266 NSRRPKIENLYDVFLNIRDDEAEH 289
                    L DV L IR+DEA H
Sbjct: 172 TD-----AMLRDVILRIREDEAGH 190


>gi|325093130|gb|EGC46440.1| alternative oxidase [Ajellomyces capsulatus H88]
          Length = 357

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 29/176 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 155 RFIFLETVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPG- 213

Query: 181 WFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLK 236
           WF R +   AQ +    +F++   Y+ISPR  + F   +E  A  TY   IK  +  KL 
Sbjct: 214 WFMRLMVLGAQGVFFNGFFIS---YLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLP 270

Query: 237 ---KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                PAP +A+ Y+              ++P  +R     + D+   IR DEA+H
Sbjct: 271 NWANQPAPDIAVAYW--------------QMPEGKR----TILDLLYYIRADEAKH 308


>gi|424037571|ref|ZP_17776332.1| alternative oxidase family protein [Vibrio cholerae HENC-02]
 gi|408895390|gb|EKM31796.1| alternative oxidase family protein [Vibrio cholerae HENC-02]
          Length = 211

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 33/204 (16%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVL-HMYESF 146
           K  + V + +T+ +   L+  Y  +   R  +LETIA VP      F  +  L  M +  
Sbjct: 13  KLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRRMKDDE 72

Query: 147 GWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISP 206
           GW R          E+ NE  HL+I  ++   +   +R L       +  V  F+Y++S 
Sbjct: 73  GWIREL------LDEAENERMHLMIFLDIAKPS-LVERLLVLLGQGVFIVVYSFIYLLSS 125

Query: 207 RMAYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLP 265
           ++A+      E  A  +Y +++ K    +++ +PAP +AI YY              +LP
Sbjct: 126 KIAHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYY--------------KLP 171

Query: 266 NSRRPKIENLYDVFLNIRDDEAEH 289
                    L DV L IR+DEA H
Sbjct: 172 TD-----AMLRDVILRIREDEAGH 190


>gi|270156838|ref|ZP_06185495.1| alternative oxidase/tellurite resistance protein TehB [Legionella
           longbeachae D-4968]
 gi|269988863|gb|EEZ95117.1| alternative oxidase/tellurite resistance protein TehB [Legionella
           longbeachae D-4968]
          Length = 503

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 26/177 (14%)

Query: 117 RDYA-RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175
           R Y  R  VLET+A VP     ++LH+           ++K    E+ NE  HL+    +
Sbjct: 33  RRYGNRAIVLETVAAVPGMVGAALLHLRCLRKIKNDEGWIKTLLDEAENERMHLITFMYI 92

Query: 176 GGNAWW--FDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE 233
               W+  F  F+AQ I V  YF+   MYVIS + A+ F   +E  A  +Y  +++   E
Sbjct: 93  AKPNWFERFIIFIAQAIFVILYFL---MYVISSKTAHRFVGYLEEEAVISYTHYLQELDE 149

Query: 234 K-LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             ++  PAP +A  Y+                 N++      L DV L +R DE +H
Sbjct: 150 GHIENCPAPEIAKSYW-------------GLSSNAQ------LRDVLLAVRKDEEDH 187


>gi|51701295|sp|Q9Y711.1|AOX_AJECA RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|4768918|gb|AAD29680.1|AF133236_1 alternative oxidase [Ajellomyces capsulatus]
 gi|4768920|gb|AAD29681.1|AF133237_1 alternative oxidase [Ajellomyces capsulatus]
 gi|23452825|gb|AAN33183.1| alternative oxidase [Ajellomyces capsulatus]
          Length = 356

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 29/176 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 154 RFIFLETVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPG- 212

Query: 181 WFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLK 236
           WF R +   AQ +    +F++   Y+ISPR  + F   +E  A  TY   IK  +  KL 
Sbjct: 213 WFMRLMVLGAQGVFFNGFFIS---YLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLP 269

Query: 237 ---KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                PAP +A+ Y+              ++P  +R     + D+   IR DEA+H
Sbjct: 270 NWANQPAPDIAVAYW--------------QMPEGKR----TILDLLYYIRADEAKH 307


>gi|258574597|ref|XP_002541480.1| alternative oxidase [Uncinocarpus reesii 1704]
 gi|237901746|gb|EEP76147.1| alternative oxidase [Uncinocarpus reesii 1704]
          Length = 360

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 29/176 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + HM       R   +++    E++NE  HLL   +L     
Sbjct: 158 RFIFLETVAAVPGMVGGMLRHMRSLRRMKRDLGWIETLLEEAYNERMHLLTFLKLAEPG- 216

Query: 181 WFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGE 233
           WF RF+   AQ +    +F++   Y++SPR  + F   +E  A  TY   I      +  
Sbjct: 217 WFMRFMVLGAQGVFFNAFFIS---YLLSPRTCHRFVGYLEEEAVLTYTHAINDLESGKLP 273

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           + + M AP +A+ Y+              ++P       + + D+   IR DEA+H
Sbjct: 274 RWQDMKAPDIAVTYW--------------KMPEGH----QKILDLLYYIRADEAKH 311


>gi|238492127|ref|XP_002377300.1| alternative oxidase AlxA, putative [Aspergillus flavus NRRL3357]
 gi|220695794|gb|EED52136.1| alternative oxidase AlxA, putative [Aspergillus flavus NRRL3357]
          Length = 320

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 34/190 (17%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L   G 
Sbjct: 126 RFIFLESVAGVPGMVAAMLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGP 185

Query: 179 AWWFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFI----KAQG 232
           A +F    AQ +     F T F   Y+ISPR+ + F   +E  A  TY K I    K   
Sbjct: 186 AMYFMVLAAQCV-----FFTGFSLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNL 240

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292
                M APA+AIKY+              ++P  +R    ++  + L +R DEA H   
Sbjct: 241 PLWSNMEAPAMAIKYW--------------QMPEGQR----SIRSLLLCVRADEANH--- 279

Query: 293 MKACQTHGNL 302
                T GNL
Sbjct: 280 RDVNHTLGNL 289


>gi|350631272|gb|EHA19643.1| alternative oxidase [Aspergillus niger ATCC 1015]
          Length = 351

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 26/186 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 149 RFIFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPG- 207

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKL---K 236
           WF R +       ++      Y++SPR+ + F   +E  A  TY + IK  +   L   +
Sbjct: 208 WFMRLMVLGAQGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPVWE 267

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
           K  AP +A++Y+              ++P  +R    ++ D+ L +R DEA+H    +  
Sbjct: 268 KTEAPEIAVQYW--------------KMPEGQR----SMKDLLLYVRADEAKH---REVN 306

Query: 297 QTHGNL 302
            T GNL
Sbjct: 307 HTLGNL 312


>gi|242765090|ref|XP_002340904.1| alternative oxidase AlxA, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724100|gb|EED23517.1| alternative oxidase AlxA, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 362

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 28/187 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE++A VP      + H+       R   +++    E++NE  HLL   ++     
Sbjct: 160 RVLFLESVAGVPGMVAGMLRHLRSLRTMRRDNGWIETLLEEAYNERMHLLTFMKIAEPGL 219

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK----AQGEKL 235
            F R +    A   YF  +F+ Y+ISPR  + F   +E  A  TY + I+        + 
Sbjct: 220 -FMRLMVLG-AQGVYFNGLFISYLISPRTCHRFVGYLEEEAVLTYTRVIQEIEAGNLPEW 277

Query: 236 KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKA 295
           +KM AP +A+KY+              ++P   R    ++ D+ L +R DEA+H    + 
Sbjct: 278 EKMEAPEIAVKYW--------------QMPEGHR----SMLDLMLYVRADEAKH---REV 316

Query: 296 CQTHGNL 302
             T GNL
Sbjct: 317 NHTLGNL 323


>gi|89072986|ref|ZP_01159533.1| alternative oxidase [Photobacterium sp. SKA34]
 gi|89051204|gb|EAR56660.1| alternative oxidase [Photobacterium sp. SKA34]
          Length = 211

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 29/202 (14%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRA 152
           KF + +   +T+ +   L+  Y  +   R  +LETIA VP      V  M+      RR 
Sbjct: 13  KFSERLAYKITQLLKYSLNIFYGKKYAKRAVILETIAAVPGM----VAGMFNHLKALRRM 68

Query: 153 ----DYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
                ++K   +E+ NE  HL+I  ++   + W +R L       +  V   +Y+ S ++
Sbjct: 69  KDDEGWIKELLSEADNERMHLMIFLDIAKPS-WVERGLVLLGQAVFICVYSIIYLTSSKI 127

Query: 209 AYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+      E  A ++Y +F+ K    +L+ + AP +AI YY      L D+ +       
Sbjct: 128 AHRVVGYFEEEACKSYTEFLEKIDSGELENVAAPQIAINYYE-----LHDDAK------- 175

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
                  L DV L IR+DEA+H
Sbjct: 176 -------LRDVVLRIREDEAKH 190


>gi|90578977|ref|ZP_01234787.1| alternative oxidase [Photobacterium angustum S14]
 gi|90439810|gb|EAS64991.1| alternative oxidase [Photobacterium angustum S14]
          Length = 211

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 29/202 (14%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRA 152
           KF + +   +T+ +   L+  Y  +   R  +LETIA VP      V  M+      RR 
Sbjct: 13  KFSERLAYKITQLLKYSLNIFYGKKYAKRAVILETIAAVPGM----VAGMFNHLKALRRM 68

Query: 153 ----DYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
                ++K   +E+ NE  HL+I  ++   + W +R L       +  V   +Y+ S ++
Sbjct: 69  KDDEGWIKELLSEADNERMHLMIFLDIAKPS-WVERALVLLGQAVFICVYSIIYLTSSKI 127

Query: 209 AYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+      E  A ++Y +F+ K    +L+ + AP +AI YY      L D+ +       
Sbjct: 128 AHRVVGYFEEEACKSYTEFLEKIDSGELENVAAPQIAINYYE-----LHDDAK------- 175

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
                  L DV L IR+DEA+H
Sbjct: 176 -------LRDVVLRIREDEAKH 190


>gi|391865057|gb|EIT74348.1| alternative oxidase AlxA, putative [Aspergillus oryzae 3.042]
          Length = 320

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 34/190 (17%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L   G 
Sbjct: 126 RFIFLESVAGVPGMVAAMLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGP 185

Query: 179 AWWFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFI----KAQG 232
           A +F    AQ +     F T F   Y+ISPR+ + F   +E  A  TY K I    K   
Sbjct: 186 AMYFMVLAAQCV-----FFTGFSLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNL 240

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292
                M APA+AIKY+              ++P  +R    ++  + L +R DEA H   
Sbjct: 241 PLWSNMEAPAMAIKYW--------------QMPEGQR----SIRSLLLCVRADEANH--- 279

Query: 293 MKACQTHGNL 302
                T GNL
Sbjct: 280 RDVNHTLGNL 289


>gi|145243920|ref|XP_001394472.1| alternative oxidase [Aspergillus niger CBS 513.88]
 gi|134079156|emb|CAK40685.1| alternative oxidase aox1-Aspergillus niger
          Length = 351

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 26/186 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 149 RFIFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPG- 207

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKL---K 236
           WF R +       ++      Y++SPR+ + F   +E  A  TY + IK  +   L   +
Sbjct: 208 WFMRLMVLGAQGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPVWE 267

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
           K  AP +A++Y+              ++P  +R    ++ D+ L +R DEA+H    +  
Sbjct: 268 KTEAPEIAVQYW--------------KMPEGQR----SMKDLLLYVRADEAKH---REVN 306

Query: 297 QTHGNL 302
            T GNL
Sbjct: 307 HTLGNL 312


>gi|330790443|ref|XP_003283306.1| hypothetical protein DICPUDRAFT_74305 [Dictyostelium purpureum]
 gi|325086731|gb|EGC40116.1| hypothetical protein DICPUDRAFT_74305 [Dictyostelium purpureum]
          Length = 348

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 22/168 (13%)

Query: 123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
            VLE+IA VP      +LH+  +        ++K    E+ NE  HL++  EL   A  F
Sbjct: 115 IVLESIASVPGLCGGVILHL-RALRTMESCSWIKTLMDEAENERIHLMVFIELT-KATLF 172

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL-KKMPAP 241
           +R L        +F+    Y+ISP+  +     +E  A +TY  FIK     L + +PA 
Sbjct: 173 ERILVTMAQFIVWFLYFIGYIISPKTMHRIVSYLEYEAVKTYTNFIKDIDLGLIENVPAS 232

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +AI+Y+        D   T R             D+ L IR DE +H
Sbjct: 233 KLAIEYWG------LDNDATLR-------------DMILVIRQDEVDH 261


>gi|83774462|dbj|BAE64585.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 310

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 78/177 (44%), Gaps = 31/177 (17%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L   G 
Sbjct: 126 RFIFLESVAGVPGMVAAMLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGP 185

Query: 179 AWWFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFI----KAQG 232
           A +F    AQ +     F T F   Y+ISPR+ + F   +E  A  TY K I    K   
Sbjct: 186 AMYFMVLAAQCV-----FFTGFSLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNL 240

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                M APA+AIKY+              ++P  +R    ++  + L +R DEA H
Sbjct: 241 PLWSNMEAPAMAIKYW--------------QMPEGQR----SIRSLLLCVRADEANH 279


>gi|149200905|ref|ZP_01877880.1| putative oxidase [Roseovarius sp. TM1035]
 gi|149145238|gb|EDM33264.1| putative oxidase [Roseovarius sp. TM1035]
          Length = 217

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 81/193 (41%), Gaps = 41/193 (21%)

Query: 111 DALYRDRDYARFFVLETIARVPYFA------FISVLHMYESFGWWRRADYLKVHFAESWN 164
           DA +  R   R  VLET+A VP           S+ H+ E  GW R          E+ N
Sbjct: 41  DAFFSKRYGHRAVVLETVAAVPGMVGGLLQHLKSLRHIREDQGWIREL------LDEAEN 94

Query: 165 EMHHLLIMEELG----GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           E  HL+   ++     G  W     +AQ I   +Y V  F Y+++PR A+     +E  A
Sbjct: 95  ERMHLMTFVQIAQPSRGERWLI--MIAQAI---FYNVFFFTYLLAPRTAHRIVGYLEEEA 149

Query: 221 FETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVF 279
             +Y +++ +    +   +PAP +AI Y+           Q AR           L DV 
Sbjct: 150 VVSYTQYLAEIDAGRQDNVPAPQIAIDYWKLS--------QDAR-----------LRDVV 190

Query: 280 LNIRDDEAEHCKT 292
           + +R DEA H  T
Sbjct: 191 IAVRADEAHHRDT 203


>gi|163803376|ref|ZP_02197252.1| hypothetical protein 1103602000422_AND4_18992 [Vibrio sp. AND4]
 gi|159172838|gb|EDP57680.1| hypothetical protein AND4_18992 [Vibrio sp. AND4]
          Length = 211

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 33/204 (16%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVL-HMYESF 146
           K  + + + +T  +   L+  Y  +   R  +LETIA VP      F  +  L  M +  
Sbjct: 13  KLSEYIALRITRLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRRMKDDE 72

Query: 147 GWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISP 206
           GW R          E+ NE  HL+I  ++   + + +R L      A+  V   +Y++S 
Sbjct: 73  GWIREL------LDEAENERMHLMIFLDIAKPS-FVERLLVLLGQGAFILVYSLIYLLSS 125

Query: 207 RMAYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLP 265
           ++A+      E  A  +Y +++ K    +++ +PAP +AI YY                 
Sbjct: 126 KIAHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIGYY----------------- 168

Query: 266 NSRRPKIENLYDVFLNIRDDEAEH 289
             + P    L DV L IR+DEA H
Sbjct: 169 --KLPADAMLRDVILRIREDEAGH 190


>gi|378754341|gb|EHY64375.1| alternative oxidase superfamily protein [Nematocida sp. 1 ERTm2]
          Length = 232

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 22/186 (11%)

Query: 108 MVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMH 167
           M+ D ++  R   R  VLET+A +P      + H+ +S         ++V  AE+ NE  
Sbjct: 56  MIADVVFYKRYVHRAIVLETVAAIPGMVGGLIRHL-KSLRKMEDDTNIRVLLAEAENERM 114

Query: 168 HLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
           HL+   E+       +R +   +   ++   + +Y++S + A+     +E  A  +Y + 
Sbjct: 115 HLMTWMEV-AKPLLLERLIVMALQGVFFNAYLMLYIVSAKTAHRLVGYLEEEAIISYTEM 173

Query: 228 IK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           ++  Q   +   PAP +A KY+  G+                      L DV L IR DE
Sbjct: 174 VREIQAGIIPNTPAPEIAKKYWNLGE-------------------DATLLDVTLAIRADE 214

Query: 287 AEHCKT 292
           A H  T
Sbjct: 215 ATHRDT 220


>gi|169600395|ref|XP_001793620.1| hypothetical protein SNOG_03031 [Phaeosphaeria nodorum SN15]
 gi|111068642|gb|EAT89762.1| hypothetical protein SNOG_03031 [Phaeosphaeria nodorum SN15]
          Length = 348

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 32/189 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI---MEELGG 177
           R   LE+IA VP      + H+       R   +++    ES+NE  HLL+   M++ G 
Sbjct: 146 RNVFLESIAGVPGMVAGMIRHLNSMRRMKRDNGWIETLLEESYNERMHLLVFLKMQQPGP 205

Query: 178 NAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGE 233
               F RF+       +     F Y+ISPR+ +     +E  A  TY + IK     +  
Sbjct: 206 ----FMRFMVLAAQGVWCNAMFFAYLISPRIVHRLVGYLEEEAVYTYTRQIKDLDAGRLP 261

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
           + +K+ AP +AI Y+              ++P   R     + D+ L IR DE++H    
Sbjct: 262 EWEKLQAPQIAIDYW--------------KMPEGNR----TMRDLLLYIRADESKH---R 300

Query: 294 KACQTHGNL 302
           +   T GNL
Sbjct: 301 EVNHTFGNL 309


>gi|452002528|gb|EMD94986.1| hypothetical protein COCHEDRAFT_1168437 [Cochliobolus
           heterostrophus C5]
          Length = 356

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 32/198 (16%)

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
           A+  ++   R   LE++A VP      + H++      R   +++    ES+NE  HLL+
Sbjct: 145 AMTEEKYLIRNVFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLV 204

Query: 172 ---MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
              M+  G     F R +       ++    F Y++SPR  + F   +E  A  TY + I
Sbjct: 205 FLKMQRPGP----FMRLMVLGAQGVFFNALFFAYLLSPRTVHRFIGYLEEEAVITYTRQI 260

Query: 229 KAQGE----KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           K   E    K +K+ AP +AI Y+               +P   R     + D+ L IR 
Sbjct: 261 KDLDEGRLPKWEKLEAPEIAIDYW--------------HMPEGHR----TMRDLLLYIRA 302

Query: 285 DEAEHCKTMKACQTHGNL 302
           DE++H +      T GNL
Sbjct: 303 DESKHREV---NHTFGNL 317


>gi|74317948|ref|YP_315688.1| oxidase [Thiobacillus denitrificans ATCC 25259]
 gi|74057443|gb|AAZ97883.1| putative oxidase [Thiobacillus denitrificans ATCC 25259]
          Length = 232

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           DA +  R   R  VLETIA VP     ++ H+           +++    E+ NE  HL+
Sbjct: 53  DAFFGRRYGHRAVVLETIAAVPGMVGATLQHLRALRRMQGDRGWIRTLLEEAENERMHLM 112

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI-K 229
               +      F+R L       +Y +  F+Y+ SP+ A+  +  +E  A  +Y +++ +
Sbjct: 113 TFIHVA-QPTQFERLLVVLAQAFFYNLYFFVYLASPKTAHRITGYLEEEAVHSYTEYLAR 171

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             G     + AP +AI+Y+               LP   R     L +V + +RDDE  H
Sbjct: 172 VDGGACTNVAAPGIAIEYWA--------------LPADAR-----LREVIVAVRDDEIRH 212


>gi|408797922|gb|AFU92145.1| mitochondrial alternative oxidase 1, partial [Araucaria
           angustifolia]
          Length = 147

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 21/163 (12%)

Query: 128 IARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLA 187
           +A VP      +LH      +     ++K    E+ NE  HL+   E+     W++R L 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVA-KPRWYERALV 59

Query: 188 QHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIK 246
             +   ++     +Y+ISP++A+     +E  A  +Y +F+K   +  +  +PAPA+AI 
Sbjct: 60  FTVQGVFFNAYFILYMISPKLAHRIVGYLEEEATHSYTEFLKELDDGNIPNVPAPAIAID 119

Query: 247 YYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           Y+                   + PK   L DV + I+ DEA H
Sbjct: 120 YW-------------------KLPKDSTLRDVVMIIKADEAHH 143


>gi|46108920|ref|XP_381518.1| hypothetical protein FG01342.1 [Gibberella zeae PH-1]
          Length = 476

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 30/189 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    ES+NE  HLL   ++    W
Sbjct: 154 RFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 213

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK--AQGEKLK- 236
           +    +    A   +F ++F+ Y+ISP++ + F   +E  A  TY + IK    G   K 
Sbjct: 214 FMKMMIIG--AQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKW 271

Query: 237 ---KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
              K   P +AI+Y+              ++P   R     + D+ L IR DEA H    
Sbjct: 272 SDPKFEIPDIAIQYW--------------KMPKEHR----TMKDLILYIRADEATH---R 310

Query: 294 KACQTHGNL 302
               T GNL
Sbjct: 311 GVNHTLGNL 319


>gi|269959615|ref|ZP_06173996.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|424047885|ref|ZP_17785441.1| alternative oxidase family protein [Vibrio cholerae HENC-03]
 gi|269835673|gb|EEZ89751.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|408883195|gb|EKM21982.1| alternative oxidase family protein [Vibrio cholerae HENC-03]
          Length = 211

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 33/204 (16%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVL-HMYESF 146
           K  + + + +T+ +   L+  Y  +   R  +LETIA VP      F  +  L  M +  
Sbjct: 13  KLSEYIALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRRMKDDE 72

Query: 147 GWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISP 206
           GW R          E+ NE  HL+I  ++   +   +R L       +  V  F+Y++S 
Sbjct: 73  GWIREL------LDEAENERMHLMIFLDIAKPS-LVERLLVLLGQGVFIVVYSFIYLLSS 125

Query: 207 RMAYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLP 265
           ++A+      E  A  +Y +++ K    +++ +PAP +AI YY                 
Sbjct: 126 KIAHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYY----------------- 168

Query: 266 NSRRPKIENLYDVFLNIRDDEAEH 289
             + P    L DV L IR+DEA H
Sbjct: 169 --KLPADAMLRDVILRIREDEAGH 190


>gi|289164721|ref|YP_003454859.1| oxidase [Legionella longbeachae NSW150]
 gi|288857894|emb|CBJ11749.1| putative alternative oxidase (eukaryotic-like) [Legionella
           longbeachae NSW150]
          Length = 228

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 25/172 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R  VLET+A VP     ++LH+           ++K    E+ NE  HL+    +    W
Sbjct: 38  RAIVLETVAAVPGMVGAALLHLRCLRKIKNDEGWIKTLLDEAENERMHLITFMYIAKPNW 97

Query: 181 W--FDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKK 237
           +  F  F+AQ I V  YF+   MYVIS + A+ F   +E  A  +Y  +++   E  ++ 
Sbjct: 98  FERFIIFIAQAIFVILYFL---MYVISSKTAHRFVGYLEEEAVISYTHYLQELDEGHIEN 154

Query: 238 MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            PAP +A  Y+                 N++      L DV L +R DE +H
Sbjct: 155 CPAPEIAKSYWGLSS-------------NAQ------LRDVLLAVRKDEEDH 187


>gi|325610915|gb|ADZ36698.1| alternative oxidase [Urechis unicinctus]
          Length = 348

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 28/176 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
           +R   LET+A VP      V H+       R   ++     E+ NE  HL++M +L   +
Sbjct: 173 SRLCFLETVAGVPGMVAAMVRHLTSLRKMRRDHGWIHTLLEEAENERMHLMVMLQLKQPS 232

Query: 180 WWF--DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGE 233
            +F     + Q + V+ + V    Y++SPR+ + F   +E  A  TY K +K       +
Sbjct: 233 LFFRLGVMVTQGVFVSGFSVA---YMLSPRLCHRFVGYLEEEAVITYTKLLKEIDSGAMQ 289

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               +P P VAI Y+                    RP    + DV L IR DEA H
Sbjct: 290 HWNTLPGPDVAISYW------------------KLRPGAA-MKDVILAIRADEAHH 326


>gi|257481060|gb|ACV60639.1| mitochondrial alternative oxidase 1b [Pinus pinea]
          Length = 144

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 21/162 (12%)

Query: 129 ARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQ 188
           A VP      +LH      +     ++K    E+ NE  HL+   E+    W ++R L  
Sbjct: 1   AAVPGMVGAILLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPKW-YERALVS 59

Query: 189 HIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKY 247
            +   ++     MY++SP++A+  +  +E  A  +Y +F+K   +  +  +PAPA+AI Y
Sbjct: 60  TVQGIFFNAYFLMYILSPKLAHRITGYLEEEAIYSYTEFLKELDKGNIPNVPAPAIAIDY 119

Query: 248 YTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +                   R PK   L DV + +R DEA H
Sbjct: 120 W-------------------RLPKDATLRDVVVVVRADEAHH 142


>gi|330813949|ref|YP_004358188.1| alternative oxidase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487044|gb|AEA81449.1| alternative oxidase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 217

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 27/185 (14%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHH 168
           V D  ++ +   R  VLET+A VP      + H+           ++K    E+ NE  H
Sbjct: 27  VADTFFKKKYGHRAVVLETVAAVPGMIAGMLTHLKSIRKIEDDKGWIKTLLDEAENERMH 86

Query: 169 LLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
           L+I   +       +R    +AQ I +  Y   +F+Y+IS R A+      E  A  +Y 
Sbjct: 87  LMIFVNIA-KPTAMERVIILIAQFIFILMY---LFIYIISKRTAHRIVGYFEEEAVYSYT 142

Query: 226 KFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +F+ +    K+K  PAP +AI YY+                    P    L DV + +R+
Sbjct: 143 EFLDELDSGKMKNEPAPKIAIDYYS-------------------LPLHATLRDVVVRVRE 183

Query: 285 DEAEH 289
           DEA H
Sbjct: 184 DEAGH 188


>gi|331695391|ref|YP_004331630.1| hypothetical protein Psed_1539 [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950080|gb|AEA23777.1| hypothetical protein Psed_1539 [Pseudonocardia dioxanivorans
           CB1190]
          Length = 291

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 20/167 (11%)

Query: 87  LEKWVIKFEQSVNI--------LLTESVIMVLDALY-RDRDYARFFVLETIARVPY---- 133
           L +  ++ EQ V +        L+   + + +D LY R R + +F VLE +AR+PY    
Sbjct: 77  LGRRALRREQEVTLAAPRRRYGLVARLLFVTMDLLYGRRRTFEKFQVLEIVARIPYQIWE 136

Query: 134 -FAFISVLHMYESFGWWRR-ADYLKVHFAESWNEMHHLLIMEEL---GGN--AWWFDRFL 186
             A+ ++   +   G   R  + ++ +  +  NE  HLLI  EL   GG     +  RFL
Sbjct: 137 NAAYRALTRRHRDAGVAHRIRERIEENREQQDNEQWHLLITAELVARGGRRLGAFRYRFL 196

Query: 187 AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE 233
              +AV YY     ++V++PR +Y  +   E HA   Y  F+    E
Sbjct: 197 PWLMAVGYYHTAWLLFVVAPRWSYRLNADFEDHAEHEYALFVAEHPE 243


>gi|332099427|gb|ABN09948.3| mitochondrial alternative oxidase [Moniliophthora perniciosa]
 gi|342349569|gb|AEL23664.1| mitochondrial alternative oxidase [Moniliophthora perniciosa]
          Length = 378

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 69/174 (39%), Gaps = 24/174 (13%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
           +R   LE+IA VP     ++ H+       R   ++     E+ NE  HL+    L   +
Sbjct: 159 SRILFLESIAGVPGMVAATIRHLTSLRLMRRDNGWIHTCLEEAENERMHLMTFMTLRKPS 218

Query: 180 WWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKL 235
            +F   +     V +Y +    Y+ISPR+ + F   +E  A  TY K IK        + 
Sbjct: 219 IFFRAMILGAQGV-FYNLFFLSYIISPRICHRFVGYLEEEAVLTYTKCIKDIEAGYVPEW 277

Query: 236 KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             MPAP +AI Y+                   R P    L DV   +R DE  H
Sbjct: 278 SDMPAPKIAIDYW-------------------RLPADAKLLDVIYAVRSDETTH 312


>gi|50550329|ref|XP_502637.1| YALI0D09933p [Yarrowia lipolytica]
 gi|49648505|emb|CAG80825.1| YALI0D09933p [Yarrowia lipolytica CLIB122]
          Length = 349

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 37/201 (18%)

Query: 116 DRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175
           D+ Y RF  LE+IA VP        H+       R   +++    E++NE  HLL   ++
Sbjct: 141 DKWYQRFLFLESIAGVPGMVGGMCRHLQSLRALKRDRAWIETLLEEAYNERMHLLTFLKM 200

Query: 176 GGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFI------ 228
               ++    +   +    +F   FM Y++SPR+ + F   +E  A  TY + I      
Sbjct: 201 HKPGYFMRTMIL--LGQGVFFNLFFMAYLMSPRICHRFVGYLEEEAVITYTRCITDIDAG 258

Query: 229 ---KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDD 285
              + +G K+K    P +AI Y+  G             PN        + D+   IR D
Sbjct: 259 RLPEWEGHKVK---IPEIAIDYWHMG-------------PNP------TMRDLIEYIRAD 296

Query: 286 EAEHCKTMKACQTHGNLRSPH 306
           EA+HC   +   T GNL   H
Sbjct: 297 EAKHC---EVNHTLGNLDQDH 314


>gi|395006406|ref|ZP_10390227.1| Alternative oxidase [Acidovorax sp. CF316]
 gi|394315617|gb|EJE52407.1| Alternative oxidase [Acidovorax sp. CF316]
          Length = 221

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 35/200 (17%)

Query: 98  VNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRR 151
           V + +T ++    D  +  R   R  VLET+A VP      ++H      M +  GW   
Sbjct: 27  VALAITLALRFFADTFFAKRYGNRAIVLETVAAVPGMVGGMLVHLRCLRWMVDDEGW--- 83

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVF-MYVISPRMAY 210
              ++    E+ NE  HL+   E+   +W F+R +   +  A +FV  F +Y++S R A+
Sbjct: 84  ---IRTLLDEAENERMHLMTFIEIARPSW-FERAVIL-LTQAVFFVCFFALYLVSSRTAH 138

Query: 211 HFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRR 269
                 E  A  +Y  ++    E +++ +PAP +AI Y+              +LP   R
Sbjct: 139 RLVGYFEEQAVVSYTLYLAEIDEGRVENVPAPDIAIAYW--------------KLPADAR 184

Query: 270 PKIENLYDVFLNIRDDEAEH 289
                L DV L +R DEA H
Sbjct: 185 -----LRDVVLAVRADEAGH 199


>gi|452823408|gb|EME30419.1| mitochondrial alternative oxidase [Galdieria sulphuraria]
          Length = 364

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 29/203 (14%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           + F   V + + + +    DA ++ R   R  VLET+A VP      V  M   F   RR
Sbjct: 143 LDFRDRVALGIVKFLRFFADAFFQKRYGHRAVVLETVAAVPGM----VGGMLTHFRCLRR 198

Query: 152 ----ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPR 207
                 +++V   E+ NE  HL+    +    + F+R L       ++     +Y++SP+
Sbjct: 199 FAPSGGWIRVLLDEAENERMHLVTFMSIAKPNY-FERLLVLITQGGFFAFYTMIYILSPK 257

Query: 208 MAYHFSECVESHAFETYDKFIKAQGEKLK-KMPAPAVAIKYYTGGDLYLFDEFQTARLPN 266
            A+     +E  A  +Y +++K     L   +PAP +AI Y+              +L +
Sbjct: 258 TAHRIVGYLEEEAIISYTEYLKGIDSGLHANIPAPQIAIDYW--------------QLDS 303

Query: 267 SRRPKIENLYDVFLNIRDDEAEH 289
             R     L DV L +R DEA H
Sbjct: 304 DAR-----LRDVVLAVRADEANH 321


>gi|317032280|ref|XP_003188816.1| alternative oxidase [Aspergillus niger CBS 513.88]
          Length = 261

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 29/196 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 59  RFIFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPG- 117

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
           WF R +       ++      Y++SPR+ + F   +E  A  TY + IK          +
Sbjct: 118 WFMRLMVLGAQGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPVWE 177

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
           K  AP +A++Y+              ++P  +R    ++ D+ L +R DEA+H +     
Sbjct: 178 KTEAPEIAVQYW--------------KMPEGQR----SMKDLLLYVRADEAKHREV---N 216

Query: 297 QTHGNLRS---PHSYS 309
            T GNL     P+ Y+
Sbjct: 217 HTLGNLNQAIDPNPYA 232


>gi|33327044|gb|AAQ08896.1| SHAM-sensitive alternative terminal oxidase isozyme II [Yarrowia
           lipolytica]
          Length = 349

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 37/201 (18%)

Query: 116 DRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175
           D+ Y RF  LE+IA VP        H+       R   +++    E++NE  HLL   ++
Sbjct: 141 DKWYQRFLFLESIAGVPGMVGGMCRHLQSLRALKRDRAWIETLLEEAYNERMHLLTFLKM 200

Query: 176 GGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFI------ 228
               ++    +   +    +F   FM Y++SPR+ + F   +E  A  TY + I      
Sbjct: 201 HKPGYFMRTMIL--LGQGVFFNLFFMAYLMSPRICHRFVGYLEEEAVITYTRCITDIDAG 258

Query: 229 ---KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDD 285
              + +G K+K    P +AI Y+  G             PN        + D+   IR D
Sbjct: 259 RLPEWEGHKVK---IPEIAIDYWHMG-------------PNP------TMRDLIEYIRAD 296

Query: 286 EAEHCKTMKACQTHGNLRSPH 306
           EA+HC   +   T GNL   H
Sbjct: 297 EAKHC---EVNHTLGNLDQDH 314


>gi|398396918|ref|XP_003851917.1| hypothetical protein MYCGRDRAFT_72918 [Zymoseptoria tritici IPO323]
 gi|339471797|gb|EGP86893.1| hypothetical protein MYCGRDRAFT_72918 [Zymoseptoria tritici IPO323]
          Length = 342

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 38/192 (19%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI---MEELGG 177
           R   LE++A VP      + H++      R   +++    ES+NE  HLL    M E G 
Sbjct: 140 RNVFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIETLLEESFNERMHLLTFLKMAEPG- 198

Query: 178 NAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEK 234
              WF R +   AQ +    +F++   Y++SPR  + F   +E  A  TY + I      
Sbjct: 199 ---WFMRVMVLGAQGVFFNAFFIS---YLLSPRTCHRFVGHLEEEAVLTYTREIADIDAG 252

Query: 235 L----KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHC 290
           L      +PAP +A+KY++              +P   R     + D+ L IR DE++H 
Sbjct: 253 LLPEWDNLPAPDIAVKYWS--------------MPEGSR----TMRDLLLYIRADESKH- 293

Query: 291 KTMKACQTHGNL 302
              +   T GNL
Sbjct: 294 --REVNHTLGNL 303


>gi|408397324|gb|EKJ76470.1| hypothetical protein FPSE_03380 [Fusarium pseudograminearum CS3096]
          Length = 353

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 30/189 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    ES+NE  HLL   ++    W
Sbjct: 154 RFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 213

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK--AQGEKLK- 236
           +    +    A   +F ++F+ Y+ISP++ + F   +E  A  TY + IK    G   K 
Sbjct: 214 FMKMMIIG--AQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKW 271

Query: 237 ---KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
              K   P +AI+Y+              ++P   R     + D+ L IR DEA H    
Sbjct: 272 SDPKFEIPDIAIQYW--------------KMPKEHR----TMKDLILYIRADEATH---R 310

Query: 294 KACQTHGNL 302
               T GNL
Sbjct: 311 GVNHTLGNL 319


>gi|219664359|gb|ACL31211.1| alternative oxidase [Crassostrea gigas]
          Length = 332

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 28/175 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP        H++      R   ++     E+ NE  HL+   +L   +W
Sbjct: 158 RICFLETVAGVPGMVAAMTRHLHSLRRLKRDHGWIHTLLEEAENERMHLMTALQLRQPSW 217

Query: 181 WFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFIK----AQGEK 234
            F   +   I     FVT+F   Y++SPR  + F   +E  A  TY K +K       + 
Sbjct: 218 LFRSGV---IVSQGAFVTMFSIAYMLSPRFCHRFVGYLEEEAVFTYSKCLKDIESGSLKH 274

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +   AP VAI+Y+                   + P+  ++ DV L IR DEA H
Sbjct: 275 WQTKAAPDVAIRYW-------------------KLPETASMKDVVLAIRADEAHH 310


>gi|342890501|gb|EGU89319.1| hypothetical protein FOXB_00272 [Fusarium oxysporum Fo5176]
          Length = 353

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 30/189 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    ES+NE  HLL   ++    W
Sbjct: 154 RFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 213

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK--AQGEKLK- 236
           +    +    A   +F ++F+ Y+ISP++ + F   +E  A  TY + IK    G   K 
Sbjct: 214 FMKMMIIG--AQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKW 271

Query: 237 ---KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
              K   P +AI+Y+              ++P   R     + D+ L IR DEA H    
Sbjct: 272 SDPKFQIPDIAIQYW--------------KMPKEHR----TMKDLILYIRADEATH---R 310

Query: 294 KACQTHGNL 302
               T GNL
Sbjct: 311 GVNHTLGNL 319


>gi|212528930|ref|XP_002144622.1| alternative oxidase AlxA, putative [Talaromyces marneffei ATCC
           18224]
 gi|210074020|gb|EEA28107.1| alternative oxidase AlxA, putative [Talaromyces marneffei ATCC
           18224]
          Length = 357

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 29/196 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE++A VP      + H+       R   +++    E++NE  HLL   ++     
Sbjct: 155 RILFLESVAGVPGMVAGMLRHLRSLRTMRRDNGWIETLLEEAYNERMHLLTFMKIAEPGL 214

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKL---K 236
            F R +       Y+    F Y++SPR  + F   +E  A  TY + I+  Q   L   +
Sbjct: 215 -FMRVMVLGAQGVYFNGLFFAYLVSPRTCHRFVGYLEEEAVLTYTRIIQELQAGNLPEWQ 273

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
            M AP +AI Y+              ++P   R     + D+ L +R DEA+H    +  
Sbjct: 274 NMEAPEIAINYW--------------KMPEGHR----KMLDLMLYVRADEAKH---REVN 312

Query: 297 QTHGNLRS---PHSYS 309
            T GNL     P+ Y+
Sbjct: 313 HTLGNLNQKEDPNPYT 328


>gi|451852964|gb|EMD66258.1| hypothetical protein COCSADRAFT_188646 [Cochliobolus sativus
           ND90Pr]
          Length = 357

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 32/198 (16%)

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
           A+  ++   R   LE++A VP      + H++      R   +++    ES+NE  HLL+
Sbjct: 146 AMTEEKYLIRNVFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLV 205

Query: 172 ---MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
              M+  G     F R +       +     F Y++SPR  + F   +E  A  TY + I
Sbjct: 206 FLKMQRPGP----FMRLMVLGAQGVFCNALFFAYLLSPRTVHRFIGYLEEEAVITYTRQI 261

Query: 229 KAQGE----KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           K   E    K +KM AP +A+ Y+              ++P   R     + D+ L IR 
Sbjct: 262 KDLDEGRLPKWEKMEAPEIAVDYW--------------QMPEGHR----TMRDLLLYIRA 303

Query: 285 DEAEHCKTMKACQTHGNL 302
           DE++H    +   T GNL
Sbjct: 304 DESKH---REVNHTFGNL 318


>gi|387130678|ref|YP_006293568.1| oxidase [Methylophaga sp. JAM7]
 gi|386271967|gb|AFJ02881.1| putative oxidase [Methylophaga sp. JAM7]
          Length = 206

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 33/186 (17%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYLKVHFAESWN 164
           DA +  R   R  VLET+A VP     ++ H      M +  GW      ++    E+ N
Sbjct: 33  DAFFSGRYGHRAVVLETVAAVPGMVGGALQHLRSLRRMQDDEGW------IRTLLDEAEN 86

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E  HL+    +   +W  +R +       +Y +   +Y+ S ++A+     +E  A  +Y
Sbjct: 87  ERMHLMTFIHIAKPSW-LERLIIIIAQGVFYNLFFLLYLFSSKVAHRIVGYLEEEAVYSY 145

Query: 225 DKFIKAQGEK-LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
            +++    +     +PAP +AI Y+              +LP++ R     L DV L +R
Sbjct: 146 TEYLNGVDDGTYDNIPAPQIAIDYW--------------QLPDNAR-----LRDVILKVR 186

Query: 284 DDEAEH 289
           DDEA H
Sbjct: 187 DDEAGH 192


>gi|374619172|ref|ZP_09691706.1| alternative oxidase [gamma proteobacterium HIMB55]
 gi|374302399|gb|EHQ56583.1| alternative oxidase [gamma proteobacterium HIMB55]
          Length = 189

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 36/179 (20%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRAD-----YLKVHFAESWNEMHHLLIMEEL 175
           R  VLET+A VP      V  M+      R+A       ++   AE+ NE  HL+   E+
Sbjct: 28  RAVVLETVAGVPGM----VAGMWVHLKSLRQAKTGYGPMIRELLAEAENERMHLMFFVEI 83

Query: 176 GGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQ 231
               W  +R    +AQ + +AYY V   +Y++SP+ A+      E  A  +Y  ++K  +
Sbjct: 84  AKPNW-VERALILIAQLVFMAYYLV---LYIVSPKTAHKMIHYFEEEAVRSYTSYLKEIE 139

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHC 290
             K+  +PAP +AI YY   DL                P    L D+ L +R DE  H 
Sbjct: 140 TGKIADVPAPKLAIDYY---DL----------------PPDAKLSDMILKVRADEQVHA 179


>gi|350530260|ref|ZP_08909201.1| hypothetical protein VrotD_04015 [Vibrio rotiferianus DAT722]
          Length = 211

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 33/204 (16%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVL-HMYESF 146
           K  + V + +T+ +   L+  Y  +   R  +LETIA VP      F  +  L  M +  
Sbjct: 13  KLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRRMKDDE 72

Query: 147 GWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISP 206
           GW R          E+ NE  HL+I  ++   +   +R L       +  V   +Y++S 
Sbjct: 73  GWIREL------LDEAENERMHLMIFLDIAKPS-LIERLLVLLGQGVFILVYSIIYLLSS 125

Query: 207 RMAYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLP 265
           ++A+      E  A  +Y +++ K    +++ +PAP +AI YY                 
Sbjct: 126 KIAHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYY----------------- 168

Query: 266 NSRRPKIENLYDVFLNIRDDEAEH 289
             + P    L DV L IR+DEA H
Sbjct: 169 --KLPADAMLRDVILRIREDEAGH 190


>gi|77362686|dbj|BAE46391.1| alternative oxidase [Phaseolus vulgaris]
          Length = 151

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 21/168 (12%)

Query: 123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
            +LET+A VP      +LH+     +     ++K    E+ NE  HL+ M EL     W 
Sbjct: 1   MMLETVAAVPGMVGGMLLHLXSLXKFQHSGGWIKALMEEAENERMHLMTMVELVXPK-WX 59

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKLKKMPAP 241
           +R L       ++     +Y++SP  A+      E  A  +Y +++K  +    + +PAP
Sbjct: 60  ERLLVLAXQGVFFNXFFALYILSPXAAHRIVGYXEEEAIXSYTQYLKXIERGAXENVPAP 119

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A+AI Y+              RLP     K      V   IR DEA H
Sbjct: 120 AIAIDYW--------------RLPKDAXXK-----XVITVIRADEAHH 148


>gi|317157513|ref|XP_001825718.2| alternative oxidase [Aspergillus oryzae RIB40]
          Length = 226

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 34/190 (17%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L   G 
Sbjct: 42  RFIFLESVAGVPGMVAAMLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGP 101

Query: 179 AWWFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFI----KAQG 232
           A +F    AQ +     F T F   Y+ISPR+ + F   +E  A  TY K I    K   
Sbjct: 102 AMYFMVLAAQCV-----FFTGFSLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNL 156

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292
                M APA+AIKY+              ++P  +R    ++  + L +R DEA H   
Sbjct: 157 PLWSNMEAPAMAIKYW--------------QMPEGQR----SIRSLLLCVRADEANH--- 195

Query: 293 MKACQTHGNL 302
                T GNL
Sbjct: 196 RDVNHTLGNL 205


>gi|336260284|ref|XP_003344938.1| hypothetical protein SMAC_08419 [Sordaria macrospora k-hell]
 gi|380087699|emb|CCC14107.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 375

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 100/262 (38%), Gaps = 46/262 (17%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           ++ EQ V+     + +     L   +   RF  LE+IA VP     S+ H+     +   
Sbjct: 137 MRPEQQVDSKNPTTALAASKPLTERQWLVRFIFLESIAGVPGMVAGSLRHLQSIRRFQPD 196

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYH 211
             ++K    ES+NE  HLL   E+     WF R +       +Y      Y+ SP++ + 
Sbjct: 197 QGWIKSLLEESYNERMHLLTFLEMYKPG-WFMRLVVLGAQGVFYNAMFISYLFSPKICHR 255

Query: 212 FSECVESHAFETYDK-FIKAQGEKLKKMPAPA-----VAIKYYTGGDLYLFDEFQTARLP 265
           F   +E  A  TY +  ++     LKK   P      +A++Y+               +P
Sbjct: 256 FVGYLEEEAVHTYTRCLLELDHGCLKKWSDPKFRIPDLAVRYWN--------------MP 301

Query: 266 NSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNL---RSPHSYSEDDFGCEDESGCI 322
              R     + D+ L +R DEA H        T GNL     P+ + E   G        
Sbjct: 302 EGHR----TMKDLILYVRADEASH---RGVNHTFGNLDQVSDPNPFMECPGG-------- 346

Query: 323 VAQADCEGIVDCIKKAVAVSTP 344
                  GIV    K ++V+ P
Sbjct: 347 -------GIVKAFPKHLSVTRP 361


>gi|401881329|gb|EJT45629.1| Alternative oxidase [Trichosporon asahii var. asahii CBS 2479]
 gi|406701771|gb|EKD04883.1| Alternative oxidase [Trichosporon asahii var. asahii CBS 8904]
          Length = 400

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 27/183 (14%)

Query: 113 LYRDRDY-ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
           L  D+D+  R  +LE+IA VP     ++ H+       R   ++     E+ NE  HLL 
Sbjct: 160 LLSDKDWMTRIILLESIAGVPGMVGGTLRHLRSLRLLRRDGGWIHTLLEEAENERMHLLT 219

Query: 172 MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI--- 228
              +     WF R L       +Y +    Y+++P++A+ F   +E  A  TY   I   
Sbjct: 220 FLTVA-QPGWFTRALVMAGQGVFYPMFFLTYLVAPKLAHRFVGALEEEAVRTYSHCINDV 278

Query: 229 -KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARL-PNSRRPKIENLYDVFLNIRDDE 286
            K    +    PAP +AI Y+              RL PN+      +L DV   +R DE
Sbjct: 279 EKGFVPEWTDKPAPQIAIDYW--------------RLKPNA------SLLDVIKAVRADE 318

Query: 287 AEH 289
           A H
Sbjct: 319 ATH 321


>gi|215983208|gb|ACJ71742.1| alternative oxidase [Paecilomyces sp. J18]
          Length = 372

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 29/196 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   ++    W
Sbjct: 168 RFLFLESVAGVPGMVGGMLRHLRSLRLMRRDNGWIESLLEEAYNERMHLLTFMKMAEPGW 227

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
            F R +       ++      Y+ SPR  + F   +E  A  TY + I+     +  K +
Sbjct: 228 -FMRLMVLGAQGVFFNAFFLSYLCSPRTCHRFVGYLEEEAVHTYTRAIEDLEAGKLPKWQ 286

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
            M AP +A++Y+   +                +PK   + D+ L IR DEA+H    +  
Sbjct: 287 NMEAPEIAVQYWNMLE---------------GKPK---MLDLPLYIRADEAKHP---EVN 325

Query: 297 QTHGNLRS---PHSYS 309
            T GNL     P+ Y+
Sbjct: 326 HTMGNLNQKTDPNPYT 341


>gi|208436650|gb|ACI28871.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
 gi|208436658|gb|ACI28875.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 147

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 34/155 (21%)

Query: 140 LHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYF 196
           L  +E  G W     ++V   E+ NE  HL+   E+     W++R   F  Q I   +YF
Sbjct: 18  LRRFEHSGGW-----IRVLLEEAENERMHLMTFMEVA-KPRWYERALVFAVQGIFWNFYF 71

Query: 197 VTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYL 255
           V    YVISP++A+     +E  A  +Y++FIK      +  +PAPA+AI Y+       
Sbjct: 72  VA---YVISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDYW------- 121

Query: 256 FDEFQTARL-PNSRRPKIENLYDVFLNIRDDEAEH 289
                  RL P+S       L DV + +R DEA H
Sbjct: 122 -------RLAPDS------TLRDVVMVVRADEAHH 143


>gi|254436730|ref|ZP_05050224.1| Alternative oxidase superfamily [Octadecabacter antarcticus 307]
 gi|198252176|gb|EDY76490.1| Alternative oxidase superfamily [Octadecabacter antarcticus 307]
          Length = 217

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 33/203 (16%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHM------YESFG 147
           F     + L + + +  D  +  R   R  VLET+A VP      + H+       +  G
Sbjct: 24  FRDRFALRLVKFMRVFADKFFAHRYGHRAVVLETVAAVPGMVGGLLQHLKALRQIRDDQG 83

Query: 148 WWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPR 207
           W R          E+ NE  HL+   E+   +  F+RFL     + +Y +  F+Y+++PR
Sbjct: 84  WIREL------IEEADNERMHLMTFIEIAQPSR-FERFLIAATQLVFYNLYFFLYLLAPR 136

Query: 208 MAYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPN 266
           +A+     +E  A  +Y +++ +     ++ +PAP +A  Y+              +LP+
Sbjct: 137 VAHRVVGYLEEEAVVSYTQYLAQIDAGAVENVPAPQIAKDYW--------------KLPD 182

Query: 267 SRRPKIENLYDVFLNIRDDEAEH 289
             R     L +V L IR+DEA H
Sbjct: 183 GAR-----LREVVLVIREDEAGH 200


>gi|90414281|ref|ZP_01222260.1| alternative oxidase [Photobacterium profundum 3TCK]
 gi|90324619|gb|EAS41166.1| alternative oxidase [Photobacterium profundum 3TCK]
          Length = 211

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 33/204 (16%)

Query: 93  KFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVL-HMYESF 146
           K  + V   +T+ +  +L+  Y  +   R  +LETIA VP      F  +  L  M +  
Sbjct: 13  KLSEHVAYKITQCLKFLLNIFYGTKYAKRAVILETIAAVPGMVAGMFNHLKALRRMKDDE 72

Query: 147 GWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISP 206
           GW R          E+ NE  HL+I   +   + W +R L      A+  V   +Y++S 
Sbjct: 73  GWIREL------LDEAENERMHLMIFLNIAKPS-WVERALVLIGQGAFIVVYSLIYLLSS 125

Query: 207 RMAYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLP 265
           ++A+      E  A ++Y +++ K    +++ + AP +AI+YY                 
Sbjct: 126 KIAHRVVGYFEEEACKSYTEYLSKIDAGEVENVAAPKIAIEYY----------------- 168

Query: 266 NSRRPKIENLYDVFLNIRDDEAEH 289
             + P    L DV + IR+DEA+H
Sbjct: 169 --QLPLDAMLRDVIVKIRNDEAKH 190


>gi|254490126|ref|ZP_05103317.1| Alternative oxidase superfamily [Methylophaga thiooxidans DMS010]
 gi|224464612|gb|EEF80870.1| Alternative oxidase superfamily [Methylophaga thiooxydans DMS010]
          Length = 207

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 33/186 (17%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYLKVHFAESWN 164
           DA +  R   R  +LET+A VP     ++ H      M +  GW      ++    E+ N
Sbjct: 33  DAFFSGRYGHRAVILETVAAVPGMVGGALQHLRSLRRMKDDDGW------IETLLDEAEN 86

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E  HLL    +      F+R L       +Y +   +Y+ S R+A+     +E  A  +Y
Sbjct: 87  ERMHLLTFIHIA-KPNMFERLLVIITQGVFYNLFFLLYLCSSRVAHRIVGYLEEEAVYSY 145

Query: 225 DKFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
            +++      + + +PAP +AI Y+              +LP   R     L DV L +R
Sbjct: 146 TEYLNGVDNGQYENVPAPQIAIDYW--------------QLPADAR-----LRDVLLKVR 186

Query: 284 DDEAEH 289
           DDEA+H
Sbjct: 187 DDEAKH 192


>gi|257481062|gb|ACV60640.1| mitochondrial alternative oxidase 1b [Pinus pinea]
          Length = 144

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 21/162 (12%)

Query: 129 ARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQ 188
           A VP      +LH      +     ++K    E+ NE  HL+   E+    W ++R L  
Sbjct: 1   AAVPGMVGGMLLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPKW-YERALVF 59

Query: 189 HIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKY 247
            +   ++     MY++SP++A+  +  +E  A  +Y +F+K   +  +  +PAPA+AI Y
Sbjct: 60  TVQGIFFNAYFLMYILSPKLAHRVTGYLEEEAIHSYTEFLKELDKGNIPNVPAPAIAIDY 119

Query: 248 YTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +                   R PK   L DV + +R DEA H
Sbjct: 120 W-------------------RLPKDSTLRDVVVVVRADEAHH 142


>gi|208436646|gb|ACI28869.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 143

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 34/155 (21%)

Query: 140 LHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYF 196
           L  +E  G W     ++V   E+ NE  HL+   E+     W++R   F  Q I   +YF
Sbjct: 14  LRRFEHSGGW-----IRVLLEEAENERMHLMTFMEVA-KPRWYERALVFAVQGIFWNFYF 67

Query: 197 VTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYL 255
           V    YVISP++A+     +E  A  +Y++FIK      +  +PAPA+AI Y+       
Sbjct: 68  VA---YVISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDYW------- 117

Query: 256 FDEFQTARL-PNSRRPKIENLYDVFLNIRDDEAEH 289
                  RL P+S       L DV + +R DEA H
Sbjct: 118 -------RLAPDS------TLRDVVMVVRADEAHH 139


>gi|208436642|gb|ACI28867.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 143

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 34/155 (21%)

Query: 140 LHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYF 196
           L  +E  G W     ++V   E+ NE  HL+   E+     W++R   F  Q I   +YF
Sbjct: 17  LRRFEHSGGW-----IRVLLEEAENERMHLMTFMEVA-KPRWYERALVFAVQGIFWNFYF 70

Query: 197 VTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYL 255
           V    YVISP++A+     +E  A  +Y++FIK      +  +PAPA+AI Y+       
Sbjct: 71  VA---YVISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDYW------- 120

Query: 256 FDEFQTARL-PNSRRPKIENLYDVFLNIRDDEAEH 289
                  RL P+S       L DV + +R DEA H
Sbjct: 121 -------RLAPDS------TLRDVVMVVRADEAHH 142


>gi|405968665|gb|EKC33714.1| Alternative oxidase, mitochondrial [Crassostrea gigas]
          Length = 304

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 28/175 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP        H++      R   ++     E+ NE  HL+   +L   +W
Sbjct: 130 RICFLETVAGVPGMVAAMTRHLHSLRRLKRDHGWIHTLLEEAENERMHLMTALQLRQPSW 189

Query: 181 WFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKK 237
            F   +   I     FVT+F   Y++SPR  + F   +E  A  TY K +K  +   LK 
Sbjct: 190 LFRSGV---IVSQGAFVTMFSIAYLLSPRFCHRFVGYLEEEAVFTYSKCLKDIESGSLKH 246

Query: 238 ---MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                AP VAI+Y+                   + P+  ++ DV L IR DEA H
Sbjct: 247 WQIKAAPDVAIRYW-------------------KLPETASMKDVVLAIRADEAHH 282


>gi|388455982|ref|ZP_10138277.1| oxidase [Fluoribacter dumoffii Tex-KL]
          Length = 220

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 27/173 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R  VLET+A VP     ++LH+           ++K    E+ NE  HL+    +     
Sbjct: 38  RAIVLETVAAVPGMVGAALLHLRCLRKIKNDEGWIKTLLEEAENERMHLITFMYIA-KPN 96

Query: 181 WFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLK 236
           WF+RF+   AQ + V  Y V   MYV+S + A+ F   +E  A  +Y  +++   E +++
Sbjct: 97  WFERFIIFVAQALFVVLYLV---MYVLSSKTAHRFVGYLEEEAVISYTHYLQELDEGRIE 153

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             PAP +A K Y G             L +  R     L +V L +R DE EH
Sbjct: 154 NSPAPDIA-KIYWG-------------LASDAR-----LREVLLAVRLDEEEH 187


>gi|14348862|gb|AAK61349.1|AF363785_1 alternative oxidase [Venturia inaequalis]
          Length = 358

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 28/187 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   L ++A VP      + H++      R   + +    ES+NE  HLLI  +L    W
Sbjct: 156 RNVFLXSVAGVPGMVAGMLRHLHSMRRMKRDHGWXETLLEESYNERMHLLIFLKLYEPGW 215

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDK-FIKAQGEKL--- 235
           +    LA   A   +F  +F+ Y+ISPR  + F   +E  A  TY +     +  KL   
Sbjct: 216 FMR--LAVLGAQGVFFNAMFLSYLISPRTCHRFVGYLEEEAVVTYTRELADLEAGKLPEW 273

Query: 236 KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKA 295
           + + AP +A+ YY               LP   R     + D+ L++R DEA+H    + 
Sbjct: 274 ETLAAPDIAVDYYN--------------LPEGHR----TMKDLLLHVRADEAKH---REV 312

Query: 296 CQTHGNL 302
             T GNL
Sbjct: 313 NHTLGNL 319


>gi|170674871|gb|ACB30186.1| mitochondrial alternative oxidase 1b [Hypericum perforatum]
          Length = 147

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 21/163 (12%)

Query: 128 IARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLA 187
           +A VP      +LH      +     ++K    E+ NE  HL+   E+    W ++R L 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVAKPKW-YERALV 59

Query: 188 QHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKLKKMPAPAVAIK 246
             +  A++ +    Y+ISP+ A+     +E  A  +Y +F+K      ++ +PAPA+A+ 
Sbjct: 60  FTVQGAFFNIYFLGYLISPKFAHRVVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAVD 119

Query: 247 YYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           Y+                   R P    L DV   +R DEA H
Sbjct: 120 YW-------------------RLPPNSTLKDVVQVVRADEAHH 143


>gi|208436652|gb|ACI28872.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 138

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 32/160 (20%)

Query: 134 FAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR---FLAQHI 190
           F +   L  +E  G W     +K    E+ NE  HL+   EL     W++R   F  Q +
Sbjct: 6   FLYCQSLRRFEQSGGW-----IKALLEEAENERMHLMTFIELA-KPQWYERALVFAVQGV 59

Query: 191 AVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYT 249
               YF+T   Y+ SP++A+  +  +E  A  +Y +F+K       + +PAPA+AI Y+ 
Sbjct: 60  FFNAYFLT---YLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYW- 115

Query: 250 GGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                             R P    L DV   IR DEA H
Sbjct: 116 ------------------RLPAESTLRDVVEVIRADEAHH 137


>gi|225639906|gb|ABZ81228.2| mitochondrial alternative oxidase 1b [Daucus carota]
          Length = 170

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 37/171 (21%)

Query: 128 IARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
           +A VP      +LH      +E  G W     +K    E+ NE  HL+   E+     W+
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENERMHLMTFMEV-SQPRWY 54

Query: 183 DR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKM 238
           +R   F  Q +    YF+T   Y++SP++A+     +E  A  +Y +F+K   +  ++ +
Sbjct: 55  ERALVFTVQGVFFNAYFLT---YLVSPKLAHRVVGYLEEEAIHSYTEFLKELDKGTIENV 111

Query: 239 PAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           PAPA+AI Y+                   R P    L DV + +R DEA H
Sbjct: 112 PAPAIAIDYW-------------------RMPPNSTLRDVVMVVRADEAHH 143


>gi|426195957|gb|EKV45886.1| AOX alternative oxidase mitochondrial precursor [Agaricus bisporus
           var. bisporus H97]
          Length = 356

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 24/174 (13%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
           +R   LE+IA VP     ++ H+       R   ++     E+ NE  HL+    L   +
Sbjct: 138 SRILFLESIAGVPGMVAATLRHLTSLRLMRRDGGWIHTCLEEAENERMHLMTFMSLRKPS 197

Query: 180 WWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI----KAQGEKL 235
            +F R L       +Y +    Y++SPR+ + F   +E  A  TY   I      +  + 
Sbjct: 198 IFF-RALVLGAQGVFYNLFFLSYLVSPRICHRFVGYLEEEAVYTYTHCIADLEAGRIPEW 256

Query: 236 KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             MPAP +AI Y+                   R PK   L DV   +R DE+ H
Sbjct: 257 SDMPAPQIAIDYW-------------------RLPKNAKLLDVIYAVRSDESTH 291


>gi|115400946|ref|XP_001216061.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
 gi|114190002|gb|EAU31702.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
          Length = 324

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 94/235 (40%), Gaps = 43/235 (18%)

Query: 121 RFFVLETIARVPYFA------FISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE 174
           RF  LE++A VP           S+  M   +GW      ++    E++NE  HLL    
Sbjct: 117 RFIFLESVAGVPGMVAGMLRHLKSIRRMKRDYGW------IETLLEEAYNERMHLLTFLN 170

Query: 175 LGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEK 234
           L   +  F R +     + ++      Y++SPR+ + F   +E  A  TY K IK     
Sbjct: 171 LAEPSR-FMRLMVLASQMVFFSAFFTAYLVSPRICHRFVGYLEEEAVITYTKAIKDLENG 229

Query: 235 L----KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHC 290
           L    + + AP +AIKY+               +P  +R     +  + L++R DEA+H 
Sbjct: 230 LLLDWENLQAPPIAIKYWN--------------MPEGKR----CMRSLLLHVRADEAKH- 270

Query: 291 KTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAVAVSTPR 345
                  T G+L    S +       ++      ++  E I D ++  + V   R
Sbjct: 271 --RDVNHTLGSLDQNRSRNPFSVNLREQ-----VESASEAIGDGVRSGLNVDIVR 318


>gi|32959910|emb|CAE11918.1| alternative oxidase [Pythium aphanidermatum]
          Length = 316

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 34/178 (19%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVH--FAESWNEMHHLLIMEELGGN 178
           R   LET+A VP        H+  S    RR DY  +H    E+ NE  HLLI   +   
Sbjct: 140 RCLFLETVAGVPGMVGGMARHL-RSLRSMRR-DYGWIHTLLEEAENERMHLLIFMNMKQP 197

Query: 179 AWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQ 231
              F R L   AQ +    +FV+   Y++SPR  + F   +E  A +TY   +K      
Sbjct: 198 GPLF-RLLVLGAQGVFFNMFFVS---YLVSPRTCHRFVGYLEEEAVKTYTGLLKDIEDGH 253

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            ++ +KM APA+A  YY              +LP+       ++YD+   IR DEA H
Sbjct: 254 LKEWEKMTAPAIARSYY--------------KLPDE-----ASVYDMIKCIRADEANH 292


>gi|51701289|sp|Q8X1N9.1|AOX_BLUGR RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|18033103|gb|AAL56983.1|AF327336_1 alternative oxidase [Blumeria graminis]
          Length = 358

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 23/208 (11%)

Query: 100 ILLTESVIMVLDALYR--DRDY-ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLK 156
           + +TE+   VL   YR  +R +  R   LE++A VP      + H++      R   +++
Sbjct: 130 VTITENGEKVLKKPYRMSERKWLIRMVFLESVAGVPGMVAGMLRHLHSLRRLKRDNGWIE 189

Query: 157 VHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSEC 215
               E++NE  HLL   ++    W F +F+    A   +F ++F+ Y+ISPR  + F   
Sbjct: 190 TLLEEAYNERMHLLTFLKMAKPGW-FMKFMIIG-AQGVFFNSMFLSYLISPRTCHRFVAY 247

Query: 216 VESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIEN 274
           +E  A  TY   I+  +   L K  +P   I      DL +    Q  ++P   R     
Sbjct: 248 LEEEAVLTYSTAIQDIEAGLLPKWTSPEFRIP-----DLAV----QYWKIPEGNR----T 294

Query: 275 LYDVFLNIRDDEAEHCKTMKACQTHGNL 302
           + D+ L IR DEA+H    +   T GNL
Sbjct: 295 MRDLLLYIRADEAKH---REVNHTLGNL 319


>gi|409079050|gb|EKM79412.1| AOX alternative oxidase mitochondrial [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 375

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 24/174 (13%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
           +R   LE+IA VP     ++ H+       R   ++     E+ NE  HL+    L   +
Sbjct: 157 SRILFLESIAGVPGMVAATLRHLTSLRLMRRDGGWIHTCLEEAENERMHLMTFMSLRKPS 216

Query: 180 WWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI----KAQGEKL 235
            +F R L       +Y +    Y++SPR+ + F   +E  A  TY   I      +  + 
Sbjct: 217 IFF-RALVLGAQGVFYNLFFLSYLVSPRICHRFVGYLEEEAVYTYTHCIADLEAGRIPEW 275

Query: 236 KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             MPAP +AI Y+                   R PK   L DV   +R DE+ H
Sbjct: 276 SDMPAPQIAIDYW-------------------RLPKNAKLLDVIYAVRSDESTH 310


>gi|452821862|gb|EME28887.1| mitochondrial alternative oxidase [Galdieria sulphuraria]
          Length = 355

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 21/199 (10%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           I F   V   + + + +  DA +R R   R  VLET+A VP      + H+     +   
Sbjct: 134 IDFRDKVAQKVVKFLRVFADAFFRKRYGHRAVVLETVAAVPGMVGGMLQHLQSLRRFKPS 193

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYH 211
             +++V   E+ NE  HL+    +       +R L       ++    F+Y++SP+ A+ 
Sbjct: 194 GGWIRVLLEEAENERMHLMTFMAIAKPT-ILERALVLLTQGGFFAFYAFIYILSPKTAHR 252

Query: 212 FSECVESHAFETYDKFIKAQGEKLK-KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRP 270
               +E  A  +Y ++++   +     +PAP +AI Y+                   +  
Sbjct: 253 IVGYLEEEAIISYTQYLQEIDKGTHANIPAPEIAIDYW-------------------QMD 293

Query: 271 KIENLYDVFLNIRDDEAEH 289
           K   L DV L +R DEA H
Sbjct: 294 KGARLRDVVLAVRADEAHH 312


>gi|336470495|gb|EGO58656.1| alternative oxidase mitochondrial precursor [Neurospora tetrasperma
           FGSC 2508]
 gi|350291545|gb|EGZ72740.1| alternative oxidase mitochondrial precursor [Neurospora tetrasperma
           FGSC 2509]
          Length = 375

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 100/262 (38%), Gaps = 46/262 (17%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           ++ EQ V+     + +     L   +   RF  LE+IA VP      + H+     +   
Sbjct: 137 MRPEQQVDSKNPTTALAASKPLTERQWLVRFIFLESIAGVPGMVAGGLRHLQSIRRFQPD 196

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYH 211
             ++K    ES+NE  HLL   E+     WF R +       +Y      Y++SP++ + 
Sbjct: 197 QGWIKSLLEESYNERMHLLTFLEMYKPG-WFMRLVVLGAQGVFYNAMFISYLLSPKICHR 255

Query: 212 FSECVESHAFETYDK-FIKAQGEKLKKMP-----APAVAIKYYTGGDLYLFDEFQTARLP 265
           F   +E  A  TY +  ++     LK+        P +A++Y+               +P
Sbjct: 256 FVGYLEEEAVHTYTRCLLELDHGCLKRWSDPNFRIPDIAVRYWN--------------MP 301

Query: 266 NSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNL---RSPHSYSEDDFGCEDESGCI 322
              R     + D+ L +R DEA H        T GNL     P+ + E   G        
Sbjct: 302 EGHR----TMKDLILYVRADEASH---RGVNHTFGNLDQVTDPNPFMECPGG-------- 346

Query: 323 VAQADCEGIVDCIKKAVAVSTP 344
                  G+V    K ++V+ P
Sbjct: 347 -------GVVKAFPKHLSVTRP 361


>gi|119193348|ref|XP_001247280.1| alternative oxidase, mitochondrial precursor [Coccidioides immitis
           RS]
 gi|392863474|gb|EAS35773.2| alternative oxidase, mitochondrial [Coccidioides immitis RS]
          Length = 360

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 23/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 158 RFIFLETVAAVPGMVGGMLRHLRSLRRMKRDLGWIETLLEEAYNERMHLLSFLKLAEPG- 216

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI----KAQGEKLK 236
           WF R +       ++      Y++SPR  + F   +E  A  TY   I      +  + K
Sbjct: 217 WFMRLMVLGAQGVFFNAFFLSYLVSPRTCHRFVGYLEEEAVLTYTHAINDLENGKLPRWK 276

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            M AP +A+ Y+              ++P   R     + D+   +R DEA+H
Sbjct: 277 DMNAPDIAVTYW--------------KMPEGHR----KILDLLYYVRADEAKH 311


>gi|303312147|ref|XP_003066085.1| Alternative oxidase, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240105747|gb|EER23940.1| Alternative oxidase, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320040066|gb|EFW22000.1| alternative oxidase [Coccidioides posadasii str. Silveira]
          Length = 360

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 23/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 158 RFIFLETVAAVPGMVGGMLRHLRSLRRMKRDLGWIETLLEEAYNERMHLLSFLKLAEPG- 216

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI----KAQGEKLK 236
           WF R +       ++      Y++SPR  + F   +E  A  TY   I      +  + K
Sbjct: 217 WFMRLMVLGAQGVFFNAFFLSYLVSPRTCHRFVGYLEEEAVLTYTHAINDLENGKLPRWK 276

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            M AP +A+ Y+              ++P   R     + D+   +R DEA+H
Sbjct: 277 DMNAPDIAVTYW--------------KMPEGHR----KILDLLYYVRADEAKH 311


>gi|85091906|ref|XP_959131.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
 gi|28920531|gb|EAA29895.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
          Length = 375

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 100/262 (38%), Gaps = 46/262 (17%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           ++ EQ V+     + +     L   +   RF  LE+IA VP      + H+     +   
Sbjct: 137 MRPEQQVDSKNPTTALAASKPLTERQWLVRFIFLESIAGVPGMVAGGLRHLQSIRRFQPD 196

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYH 211
             ++K    ES+NE  HLL   E+     WF R +       +Y      Y++SP++ + 
Sbjct: 197 QGWIKSLLEESYNERMHLLTFLEMYKPG-WFMRLVVLGAQGVFYNAMFISYLLSPKICHR 255

Query: 212 FSECVESHAFETYDK-FIKAQGEKLKKMP-----APAVAIKYYTGGDLYLFDEFQTARLP 265
           F   +E  A  TY +  ++     LK+        P +A++Y+               +P
Sbjct: 256 FVGYLEEEAVHTYTRCLLELDHGCLKRWSDPNFRIPDIAVRYWN--------------MP 301

Query: 266 NSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNL---RSPHSYSEDDFGCEDESGCI 322
              R     + D+ L +R DEA H        T GNL     P+ + E   G        
Sbjct: 302 EGHR----TMKDLILYVRADEASH---RGVNHTFGNLDQVTDPNPFMECPGG-------- 346

Query: 323 VAQADCEGIVDCIKKAVAVSTP 344
                  G+V    K ++V+ P
Sbjct: 347 -------GVVKAFPKHLSVTRP 361


>gi|400596179|gb|EJP63955.1| alternative oxidase [Beauveria bassiana ARSEF 2860]
          Length = 593

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 30/189 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE+IA VP      + H+       R   +++    ES+NE  HLL   ++    W
Sbjct: 393 RFVFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 452

Query: 181 WFDRFLAQHIAVAYYFVTVF-MYVISPRMAYHFSECVESHAFETYDKFIK--AQGEKLK- 236
           +    +    A   +F  +F MY+ +P++ + F   +E  A  TY + IK    G   + 
Sbjct: 453 FMKLMIIG--AQGVFFNGMFLMYLANPKIVHRFVGYLEEEAVHTYTRSIKEIEDGHLPRW 510

Query: 237 ---KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
              K   P +AI+Y+              R+P       + + D+ L IR DEA H    
Sbjct: 511 ADPKFRIPDIAIQYW--------------RMPEGH----QTMKDLLLYIRADEAGH---R 549

Query: 294 KACQTHGNL 302
               T GNL
Sbjct: 550 GVNHTFGNL 558


>gi|302921940|ref|XP_003053363.1| hypothetical protein NECHADRAFT_98640 [Nectria haematococca mpVI
           77-13-4]
 gi|256734304|gb|EEU47650.1| hypothetical protein NECHADRAFT_98640 [Nectria haematococca mpVI
           77-13-4]
          Length = 357

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 30/215 (13%)

Query: 95  EQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADY 154
           +Q V+     + ++    L   +   RF  LE+IA VP      + H+       R   +
Sbjct: 132 QQQVDKKHPTTSVVAQKPLTEAQWLVRFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGW 191

Query: 155 LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFS 213
           ++    ES+NE  HLL   ++    W+    +    A   +F ++F+ Y+ISP++ + F 
Sbjct: 192 IETLLEESYNERMHLLTFMKMCEPGWFMKMMIIG--AQGVFFNSLFVSYLISPKIVHRFV 249

Query: 214 ECVESHAFETYDKFIK--AQGEKLK----KMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
             +E  A  TY + IK    G   K    K   P +A++Y+              ++P  
Sbjct: 250 GYLEEEAVHTYTRCIKEIEDGNLPKWNDPKFAIPDIAVQYW--------------QMPKE 295

Query: 268 RRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNL 302
            R     + D+ L IR DEA H        T GNL
Sbjct: 296 HR----TMKDLILYIRADEAVH---RGVNHTLGNL 323


>gi|429847992|gb|ELA23528.1| alternative oxidase [Colletotrichum gloeosporioides Nara gc5]
          Length = 356

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 27/213 (12%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE+IA VP      + H+       R   +++    ES+NE  HLL   ++    W
Sbjct: 157 RFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIETLLEESFNERMHLLTFMKMSEPGW 216

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIKAQGEKL---- 235
           +    +    A   +F ++F+ Y++SP++ + F   +E  A  TY + I    + L    
Sbjct: 217 FMKTMILG--AQGVFFNSMFLSYLVSPKITHRFVGYLEEEAVHTYTRCIHEIDQGLLPKW 274

Query: 236 --KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
              K   P +A++Y+              ++P   R     + D+ + IR DEA H    
Sbjct: 275 SDPKFEIPDIAVQYW--------------KIPEGHR----TMKDLIMYIRADEAVHRGVN 316

Query: 294 KACQTHGNLRSPHSYSEDDFGCEDESGCIVAQA 326
                      P+ +  +    E  +  + AQ 
Sbjct: 317 HTLSNLNQKEDPNPFVSEYKDGEKPNAALKAQG 349


>gi|295673346|ref|XP_002797219.1| alternative oxidase [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226282591|gb|EEH38157.1| alternative oxidase [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 352

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 25/176 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H+       R   +++    E++NE  HLL   +L    W
Sbjct: 150 RFIFLETVAGVPGMVGGMLRHLRSLRRMKRDHGWIETLLEEAYNERMHLLSFLKLAEPGW 209

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKM 238
                +    A   +F T F+ Y+ISPR  + F   +E  A  TY   I   +  KL + 
Sbjct: 210 CMRLMVLG--AQGVFFNTFFIAYLISPRTCHRFVGYLEEEAVMTYTHAINDLEAGKLPEW 267

Query: 239 P---APAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCK 291
               AP +A+ Y+               +P ++R     + D+   +R DEA+HC+
Sbjct: 268 ANKEAPDIAVSYW--------------HMPENKR----TILDLLYYVRADEAKHCE 305


>gi|145350126|ref|XP_001419468.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357496|ref|XP_001422954.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579700|gb|ABO97761.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583198|gb|ABP01313.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 221

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 69/176 (39%), Gaps = 27/176 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + HM       R   ++     E+ NE  HLL   +L     
Sbjct: 58  RFIFLETVAGVPGMVGAMLRHMMSLRTLKRDHGWIHTLLEEAENERMHLLTFLKLREPGL 117

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-----AQGEK 234
            F   LA   A   +F   F+ Y+ISPR  + F   +E  A  TY   +          +
Sbjct: 118 MFR--LAVLGAQGVFFNAFFLSYLISPRTCHRFVGYLEEEAVRTYTHALHDIDGDGPASE 175

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHC 290
              MPAP +AIKY+                   R P    + D+ + +R DEA H 
Sbjct: 176 WATMPAPKLAIKYW-------------------RMPDDATVRDLIIAVRADEASHS 212


>gi|424863271|ref|ZP_18287184.1| alternative oxidase 1c [SAR86 cluster bacterium SAR86A]
 gi|400757892|gb|EJP72103.1| alternative oxidase 1c [SAR86 cluster bacterium SAR86A]
          Length = 200

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 14/170 (8%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVP------YFAFISVLHMYESFGWWRRADYL 155
           +T+    + D  +  R   R  VLET+A VP      +  F S+  M   +G     + +
Sbjct: 20  MTKFFRFIADTFFAKRYGHRAVVLETVAGVPGMVAGVWMHFKSLRKMKVGYG-----EQI 74

Query: 156 KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSEC 215
           +   AE+ NE  HL+   E+     +F+RF+     + +    +FMYV   R A+     
Sbjct: 75  REMLAEAENERMHLMFFIEIA-KPNYFERFIVLFSQMIFGLFYLFMYVFFTRTAHRMIGY 133

Query: 216 VESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYY-TGGDLYLFDEFQTAR 263
            E  A ++Y ++++  +  K++ +PAP +AI YY  G D  L D  +  R
Sbjct: 134 FEDEAVKSYTEYLEMVESGKVENIPAPKLAISYYGIGSDSKLSDLIRCVR 183


>gi|302411548|ref|XP_003003607.1| alternative oxidase [Verticillium albo-atrum VaMs.102]
 gi|261357512|gb|EEY19940.1| alternative oxidase [Verticillium albo-atrum VaMs.102]
          Length = 334

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 106/252 (42%), Gaps = 33/252 (13%)

Query: 5   LSQTVSVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQD---EEEKV 61
           L++ V++ S  + ++  +    +++T     PSS     RNF    A+ L+D    +E  
Sbjct: 19  LARAVALSSTSSSHIAFLGHPASLRTTTLYHPSS----QRNFSSTPASRLRDFFPAKETE 74

Query: 62  VVEESSP------------LKNFPNDDEPPETGSASA-----LEKWV------IKFEQSV 98
            + +++P            L   P    P   G  +A     + +W       +K EQ V
Sbjct: 75  QIRKTAPAWPHEGYSEADMLAVVPGHRAPETWGDWAAWKFVRVARWTMDRATGLKPEQQV 134

Query: 99  NILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVH 158
           +     + ++  + L   +   RF  LE+IA VP      + H+       R   +++  
Sbjct: 135 DKKNPTTAVVANEPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIETL 194

Query: 159 FAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVE 217
             ES+NE  HLL   ++    W+    L    A   +F  +F+ Y++SP++ + F   +E
Sbjct: 195 LEESYNERMHLLTFMKMSEPGWFMKVMLIG--AQGVFFNGMFLSYLVSPKITHRFVGYLE 252

Query: 218 SHAFETYDKFIK 229
             A  TY + I+
Sbjct: 253 EEAVHTYSRCIR 264


>gi|402077745|gb|EJT73094.1| alternative oxidase [Gaeumannomyces graminis var. tritici
           R3-111a-1]
          Length = 346

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 33/219 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R+  LE+IA VP      + H++      R   +++    E++NE  HLL   ++    W
Sbjct: 145 RYIFLESIAGVPGMVAGMLRHLHSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMCEPGW 204

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIKA-QGEKLKK- 237
           +    +    A   YF  +F+ Y+ISP++ + F   +E  A  TY + IK  +  +L + 
Sbjct: 205 FLKMLILG--AQGVYFNALFVAYLISPKICHRFVGYLEEEAVHTYTRSIKELEAGQLPRW 262

Query: 238 ----MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
                  P +A+ Y+               +P   R     + D+ L IR DEA H    
Sbjct: 263 SDPGFKVPEIAVAYWG--------------MPEGHR----TMRDLLLYIRADEANH---R 301

Query: 294 KACQTHGNL---RSPHSYSEDDFGCEDESGCIVAQADCE 329
               T GNL     P+ +  D  G ++        A  E
Sbjct: 302 GVNHTLGNLDQKEDPNPFVSDYKGGKERPVAFTRPAGFE 340


>gi|254452548|ref|ZP_05065985.1| alternative oxidase [Octadecabacter arcticus 238]
 gi|198266954|gb|EDY91224.1| alternative oxidase [Octadecabacter arcticus 238]
          Length = 217

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 33/203 (16%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFA------FISVLHMYESFG 147
           F     + L + + +  D  +  R   R  VLET+A VP           ++ H+ +  G
Sbjct: 24  FRDRFALRLVKFLRVFADKFFAGRYSHRAVVLETVAAVPGMVGGLLQHLKALRHIRDDQG 83

Query: 148 WWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPR 207
           W R          E+ NE  HL+   E+   +  F+RFL     + +Y    F+Y+++PR
Sbjct: 84  WIREL------IEEADNERMHLMTFIEIAQPSK-FERFLVAATQLIFYNFYFFLYLLAPR 136

Query: 208 MAYHFSECVESHAFETYDKFIKAQGEKL-KKMPAPAVAIKYYTGGDLYLFDEFQTARLPN 266
           +A+     +E  A  +Y ++++     L + + AP +AI Y+                 N
Sbjct: 137 VAHRVVGYLEEEAVVSYTQYLEQIDAGLIENIAAPQIAIDYWKLS-------------AN 183

Query: 267 SRRPKIENLYDVFLNIRDDEAEH 289
           +R      L DV L IR+DEA H
Sbjct: 184 AR------LRDVVLVIREDEAGH 200


>gi|189211215|ref|XP_001941938.1| alternative oxidase, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187978031|gb|EDU44657.1| alternative oxidase, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 352

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 32/198 (16%)

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
           A+  ++   R   LE++A VP      + H++      R   +++    ES+NE  HLL+
Sbjct: 141 AMNEEKYLIRNVFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLV 200

Query: 172 ---MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
              M++ G     F R +       +     F Y++SPR  + F   +E  A  TY + I
Sbjct: 201 FLKMQQPGR----FMRLMVLGAQGVFCNALFFAYLLSPRTVHRFIGYLEEEAVITYTRQI 256

Query: 229 K----AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +     +  K +KM AP +AI Y+               +P   R     + D+ L IR 
Sbjct: 257 EDLDAGRLPKWEKMQAPEIAIDYWN--------------MPEGHR----TMRDLLLYIRA 298

Query: 285 DEAEHCKTMKACQTHGNL 302
           DE++H +      T GNL
Sbjct: 299 DESKHREV---NHTFGNL 313


>gi|125583367|gb|EAZ24298.1| hypothetical protein OsJ_08050 [Oryza sativa Japonica Group]
          Length = 325

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 21/137 (15%)

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
           +++    E+ NE  HL+   E+     W++R L   +   ++      Y++SP++A+   
Sbjct: 182 WIRALLEEAENERMHLMTFMEVA-KPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVV 240

Query: 214 ECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272
             +E  A  +Y +++K  +  K++ +PAP +AI Y+                   R P  
Sbjct: 241 GYLEEEAIHSYTEYLKDIEAGKIENVPAPPIAIDYW-------------------RLPAG 281

Query: 273 ENLYDVFLNIRDDEAEH 289
             L DV + +R DEA H
Sbjct: 282 ATLKDVVVVVRADEAHH 298


>gi|255728097|ref|XP_002548974.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
 gi|240133290|gb|EER32846.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
          Length = 361

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 36/181 (19%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A VP      + H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 156 TRCIFLESVAGVPGSVAGFIRHLHSLRMLKRDKAWIETLHDEAYNERMHLLTFIKIGKPS 215

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE--- 233
           W F R   ++ Q +    +F   F+Y+++PR  + F   +E  A  TY   ++   E   
Sbjct: 216 W-FTRSIIYVGQGVFTNVFF---FLYLLNPRYCHRFVGYLEEEAVRTYTHLLEELKEPGK 271

Query: 234 --KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIEN---LYDVFLNIRDDEAE 288
               +KM  P VA +Y+                     P++ N     D+ L IR DEA+
Sbjct: 272 LPNFQKMKIPTVAAQYW---------------------PELTNESSFRDLILRIRADEAK 310

Query: 289 H 289
           H
Sbjct: 311 H 311


>gi|66813644|ref|XP_641001.1| hypothetical protein DDB_G0280819 [Dictyostelium discoideum AX4]
 gi|18147009|dbj|BAB82989.1| alternative oxidase [Dictyostelium discoideum]
 gi|60469023|gb|EAL67021.1| hypothetical protein DDB_G0280819 [Dictyostelium discoideum AX4]
          Length = 337

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 22/168 (13%)

Query: 123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
            VLET+A VP       LH+ ++    +  +++K+   E  NE  HLL   EL       
Sbjct: 132 IVLETVAAVPGLVAGMFLHL-KTLRNMQSNNWIKILMDEMENERMHLLSFMELT-KPTLL 189

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAP 241
           +R +       Y+ + +  YV+SP+ A+ F+  +E  A  TY   ++     K+    AP
Sbjct: 190 ERGMVAVTQAIYWNLFLVFYVLSPKTAHRFTGYLEEQAVVTYTHMLEDIDSGKVPNYKAP 249

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +AI+Y+                     P+   L D+ L IR DE++H
Sbjct: 250 QIAIEYWG-------------------LPEDATLRDLILVIRQDESDH 278


>gi|330907160|ref|XP_003295728.1| hypothetical protein PTT_02544 [Pyrenophora teres f. teres 0-1]
 gi|311332743|gb|EFQ96174.1| hypothetical protein PTT_02544 [Pyrenophora teres f. teres 0-1]
          Length = 352

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 32/198 (16%)

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
           A+  ++   R   LE++A VP      + H++      R   +++    ES+NE  HLL+
Sbjct: 141 AMNEEKYLIRNVFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLV 200

Query: 172 ---MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
              M++ G     F R +       +     F Y++SPR  + F   +E  A  TY + I
Sbjct: 201 FLKMQQPGR----FMRLMVLGAQGVWCNALFFAYLLSPRTVHRFVGYLEEEAVITYTRQI 256

Query: 229 K----AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +     +  K +KM AP +AI Y+               +P   R     + D+ L IR 
Sbjct: 257 EDLDAGRLPKWEKMQAPEIAIDYWN--------------MPEGHR----TMRDLLLYIRA 298

Query: 285 DEAEHCKTMKACQTHGNL 302
           DE++H    +   T GNL
Sbjct: 299 DESKH---REVNHTFGNL 313


>gi|154281621|ref|XP_001541623.1| alternative oxidase, mitochondrial precursor [Ajellomyces
           capsulatus NAm1]
 gi|150411802|gb|EDN07190.1| alternative oxidase, mitochondrial precursor [Ajellomyces
           capsulatus NAm1]
          Length = 357

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 29/176 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LET+A VP      + H+       R   +++    E++NE  HLL   +L     
Sbjct: 155 RFIFLETVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPG- 213

Query: 181 WFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKL- 235
           WF R +   AQ +    +F++   Y+ISPR  + F   +E  A  TY   IK  +  KL 
Sbjct: 214 WFMRLMVLGAQGVFFNGFFIS---YLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLP 270

Query: 236 --KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                 AP +A+ Y+              ++P  +R     + D+   IR DEA+H
Sbjct: 271 NWANQAAPDIAVAYW--------------QMPEGKR----TILDLLYYIRADEAKH 308


>gi|51701296|sp|O93853.1|AOX1_CANAL RecName: Full=Alternative oxidase 1, mitochondrial; Flags:
           Precursor
 gi|4090947|gb|AAC98914.1| alternative oxidase [Candida albicans]
          Length = 379

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 30/178 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE+IA VP      V H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 174 TRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIGKPS 233

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE--- 233
            WF R   ++ Q +    +F+   +Y+++PR  + F   +E  A  TY   I    +   
Sbjct: 234 -WFTRSIIYIGQGVFTNIFFL---VYLMNPRYCHRFVGYLEEEAVRTYTHLIDELDDPNK 289

Query: 234 --KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               +K+P P +A++Y+                P S      +  D+ L IR DEA+H
Sbjct: 290 LPDFQKLPIPNIAVQYW------------PELTPES------SFKDLILRIRADEAKH 329


>gi|238878670|gb|EEQ42308.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 379

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 30/178 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE+IA VP      V H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 174 TRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIGKPS 233

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE--- 233
            WF R   ++ Q +    +F+   +Y+++PR  + F   +E  A  TY   I    +   
Sbjct: 234 -WFTRSIIYIGQGVFTNIFFL---VYLMNPRYCHRFVGYLEEEAVRTYTHLIDELDDPNK 289

Query: 234 --KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               +K+P P +A++Y+                P S      +  D+ L IR DEA+H
Sbjct: 290 LPDFQKLPIPNIAVQYW------------PELTPES------SFKDLILRIRADEAKH 329


>gi|134079505|emb|CAK46037.1| unnamed protein product [Aspergillus niger]
          Length = 310

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 33/198 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L   G 
Sbjct: 108 RFIFLESVAGVPGMVGGMLRHLKSIRRMKRDHGWIESLIDEAYNERMHLLTFLDLADPGI 167

Query: 179 AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKL-- 235
                   AQ +    +FV    Y++SP+  + F   +E  A  TY   I+  Q  KL  
Sbjct: 168 VMRLVVLAAQGVFFNAFFV---FYLVSPKTCHRFVGYLEEEAVITYTHAIRQLQAGKLPA 224

Query: 236 -KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMK 294
              + AP +AIKY+              R+P  +    + + D+ L +R DEA+H    +
Sbjct: 225 WDNLSAPEIAIKYW--------------RMPEGK----QRMVDLLLYVRADEAKH---RE 263

Query: 295 ACQTHGNL---RSPHSYS 309
              T GNL     P+ Y+
Sbjct: 264 VNHTLGNLDQHEDPNPYT 281


>gi|388853396|emb|CCF53016.1| related to alternative oxidase precursor, mitochondrial [Ustilago
           hordei]
          Length = 417

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 70/175 (40%), Gaps = 28/175 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LETIA VP     +  H+       R   ++     ++ NE  HLL    L     
Sbjct: 205 RIIFLETIAGVPGMVAATCRHLQSLRLMKRDKGWIHTLLQDAENERMHLLTFMHLAKPGT 264

Query: 181 WFDRF--LAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK--AQGE--K 234
               F  LAQ +    +F+    Y+ SPR+A+ F   +E  A  TY   ++   QG   +
Sbjct: 265 IARAFALLAQGVFYNLFFI---FYLFSPRIAHRFVGVLEEEAVLTYSCILEDIKQGRLPE 321

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            + +PAP +A  Y+  GD  L                   L DV   +R DEA H
Sbjct: 322 WENVPAPEIAKHYWQLGDQAL-------------------LVDVIRAVRADEATH 357


>gi|317033065|ref|XP_001394812.2| alternative oxidase [Aspergillus niger CBS 513.88]
          Length = 300

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 33/198 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L   G 
Sbjct: 98  RFIFLESVAGVPGMVGGMLRHLKSIRRMKRDHGWIESLIDEAYNERMHLLTFLDLADPGI 157

Query: 179 AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKL-- 235
                   AQ +    +FV    Y++SP+  + F   +E  A  TY   I+  Q  KL  
Sbjct: 158 VMRLVVLAAQGVFFNAFFV---FYLVSPKTCHRFVGYLEEEAVITYTHAIRQLQAGKLPA 214

Query: 236 -KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMK 294
              + AP +AIKY+              R+P  +    + + D+ L +R DEA+H    +
Sbjct: 215 WDNLSAPEIAIKYW--------------RMPEGK----QRMVDLLLYVRADEAKH---RE 253

Query: 295 ACQTHGNL---RSPHSYS 309
              T GNL     P+ Y+
Sbjct: 254 VNHTLGNLDQHEDPNPYT 271


>gi|208436654|gb|ACI28873.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 142

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 33/150 (22%)

Query: 144 ESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVF 200
           +S GW      +K    E+ NE  HL+   EL     W++R   F  Q +    YF+T  
Sbjct: 21  QSGGW------IKALLEEAENERMHLMTFIELA-KPQWYERAIVFAVQGVFFNAYFLT-- 71

Query: 201 MYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEF 259
            Y+ SP++A+  +  +E  A  +Y +F+K       + +PAPA+AI Y+           
Sbjct: 72  -YLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYW----------- 119

Query: 260 QTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                   R P    L DV   IR DEA H
Sbjct: 120 --------RLPAESTLRDVVEVIRADEAHH 141


>gi|406862534|gb|EKD15584.1| hypothetical protein MBM_06212 [Marssonina brunnea f. sp.
           'multigermtubi' MB_m1]
          Length = 355

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 28/188 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE++A VP      + H++      R   +++    E++NE  HLL   ++     
Sbjct: 151 RMVFLESVAGVPGMVAGMIRHLHSLRRLRRDNGWIETLLEEAYNERMHLLTFMKMA-EPG 209

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKL---- 235
            F RF+       ++   V  Y+ISPR  + F   +E  A  TY   IK  +  KL    
Sbjct: 210 RFMRFMILGAQGVFFNSMVLFYLISPRTCHRFVGYLEEEAVLTYTLAIKDIEAGKLPKWQ 269

Query: 236 -KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMK 294
             K   P +A+ Y+              ++P   R     + D+ L IR DEA+H    +
Sbjct: 270 DPKFKVPELAVNYW--------------KMPEGNR----TMRDLLLYIRADEAKH---RE 308

Query: 295 ACQTHGNL 302
              T GNL
Sbjct: 309 VNHTFGNL 316


>gi|350631533|gb|EHA19904.1| hypothetical protein ASPNIDRAFT_39327 [Aspergillus niger ATCC 1015]
          Length = 345

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 33/198 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L   G 
Sbjct: 143 RFIFLESVAGVPGMVGGMLRHLKSIRRMKRDHGWIESLIDEAYNERMHLLTFLDLADPGI 202

Query: 179 AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKLK- 236
                   AQ +    +FV    Y++SP+  + F   +E  A  TY   I+  Q  KL  
Sbjct: 203 VMRLVVLAAQGVFFNAFFV---FYLVSPKTCHRFVGYLEEEAVITYTHAIRQLQAGKLPA 259

Query: 237 --KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMK 294
              + AP +AIKY+              R+P  +    + + D+ L +R DEA+H    +
Sbjct: 260 WDNLSAPEIAIKYW--------------RMPEGK----QRMVDLLLYVRADEAKH---RE 298

Query: 295 ACQTHGNL---RSPHSYS 309
              T GNL     P+ Y+
Sbjct: 299 VNHTLGNLDQHEDPNPYT 316


>gi|384500340|gb|EIE90831.1| hypothetical protein RO3G_15542 [Rhizopus delemar RA 99-880]
          Length = 260

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 91/223 (40%), Gaps = 54/223 (24%)

Query: 108 MVLDALYRDRDYARFFVLETIARVPYFAFISVLHMY------ESFGWWRRADYLKVHFAE 161
           ++ D  +    Y R  +LETIA VP      + HM       E  GW        +H AE
Sbjct: 62  LLPDTYFGKDHYMRAVMLETIAAVPGMVGAMLRHMKSLRRMSEDNGWISHL----LHEAE 117

Query: 162 SWNEMHHLLI-MEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVE 217
             NE  HL+  M+ L    W  DR +   AQ I    YF+   +Y++SP+ A+     +E
Sbjct: 118 --NERMHLMTWMKCLKPTVW--DRLMVLGAQGIFFNAYFL---LYLVSPKTAHRMCGYLE 170

Query: 218 SHAFETYDKFIKAQGEK-LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLY 276
             A  +Y  F+    +  +K  PAP VAI+YY                  +  P+   + 
Sbjct: 171 EEAVISYTHFLNDIDQGIIKNGPAPQVAIEYY------------------NLHPQ-ATIR 211

Query: 277 DVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDES 319
           DV L +R DEA H             R  + Y  D    +DE+
Sbjct: 212 DVVLAVRADEAVH-------------RDANHYLSDRIAAQDEN 241


>gi|345565383|gb|EGX48333.1| hypothetical protein AOL_s00080g303 [Arthrobotrys oligospora ATCC
           24927]
          Length = 360

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE+IA VP F   ++ H+       R   +++    E +NE  HLL   +L     
Sbjct: 157 RFIFLESIAGVPGFVAGTLRHLKSIRSLRRDNGWIETLLEEGYNERMHLLTFLKL-HQPG 215

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
            F R +       +Y      Y++SPR  + F   +E  A  TY + I      +    +
Sbjct: 216 LFMRLMIIGAQGVFYNAFFLSYLLSPRTCHRFVGYLEEEAVITYTRAISDIDAGKLPGFE 275

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            M AP +A+ Y+                P +      ++ D+ L IR DEA+H
Sbjct: 276 NMKAPQIAVDYWKMN-------------PGA------SIRDMLLYIRADEAKH 309


>gi|68464765|ref|XP_723460.1| constitutive alternative oxidase [Candida albicans SC5314]
 gi|68465142|ref|XP_723270.1| constitutive alternative oxidase [Candida albicans SC5314]
 gi|46445297|gb|EAL04566.1| constitutive alternative oxidase [Candida albicans SC5314]
 gi|46445494|gb|EAL04762.1| constitutive alternative oxidase [Candida albicans SC5314]
          Length = 379

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 30/178 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE+IA VP      + H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 174 TRCIFLESIAGVPGSVAGFIRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIGKPS 233

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE--- 233
            WF R   ++ Q +    +F+   +Y+++PR  + F   +E  A  TY   I    +   
Sbjct: 234 -WFTRSIIYIGQGVFTNIFFL---VYLMNPRYCHRFVGYLEEEAVRTYTHLIDELDDPNK 289

Query: 234 --KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               +K+P P +A++Y+                P S      +  D+ L IR DEA+H
Sbjct: 290 LPDFQKLPIPNIAVQYW------------PELTPES------SFKDLILRIRADEAKH 329


>gi|417951248|ref|ZP_12594355.1| hypothetical protein VISP3789_20108 [Vibrio splendidus ATCC 33789]
 gi|342805200|gb|EGU40478.1| hypothetical protein VISP3789_20108 [Vibrio splendidus ATCC 33789]
          Length = 210

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 31/202 (15%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVP-----YFAFISVLHMYESFGW 148
             + V +++T  +   L+  Y      R  +LETIA VP      F  +  L   +  G 
Sbjct: 13  LSEKVALVVTRLLKKTLNLFYGKHLAKRAMLLETIAAVPGMVAGVFNHLKALRRMKDDGG 72

Query: 149 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
           W     +K    E+ NE  HL+I   +   +   +R L   +   +  +   +Y+ S + 
Sbjct: 73  W-----IKELLDEADNERMHLMIFLTVTKPSI-IERILVMLLQFLFLIIYSVIYLASSKT 126

Query: 209 AYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           A+      E  A  +Y ++I K +   L   PAP +AI YY                   
Sbjct: 127 AHRIVGFFEEEACNSYSEYISKIEEGALPNHPAPEIAITYY------------------- 167

Query: 268 RRPKIENLYDVFLNIRDDEAEH 289
           R P+     DV   IR+DEA+H
Sbjct: 168 RLPEGATFLDVLFRIREDEAKH 189


>gi|208436662|gb|ACI28877.1| mitochondrial alternative oxidase 1b [Vitis vinifera]
          Length = 201

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           +KF         +++ +     ++ +      +LET+A VP      +LH      + + 
Sbjct: 27  VKFMDKFAYWTVQALKVPTHMFFQRKHMCHAMLLETVAAVPGMVGGMLLHCQSLRRFEQS 86

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRM 208
             ++K    E+ NE  HL+   EL    W ++R   F  Q +    YF+T   Y+ SP++
Sbjct: 87  GGWIKALLEEAENERMHLMTFIELAKPQW-YERALVFAVQGVFFNAYFLT---YLASPKV 142

Query: 209 AYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPAVAIKYY 248
           A+  +  +E  A  +Y +F+K       + +PAPA+AI Y+
Sbjct: 143 AHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYW 183


>gi|302689549|ref|XP_003034454.1| hypothetical protein SCHCODRAFT_14899 [Schizophyllum commune H4-8]
 gi|300108149|gb|EFI99551.1| hypothetical protein SCHCODRAFT_14899 [Schizophyllum commune H4-8]
          Length = 378

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 30/176 (17%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRAD-YLKVHFAESWNEMHHLLIMEELGGNA 179
           RF  LE+IA VP     ++ H+ +S    RR + ++     E+ NE  HL+    L  ++
Sbjct: 167 RFLFLESIAGVPGMVAATLRHL-QSLRLMRRDNGWIHTCLEEAENERMHLMTFMTLRKHS 225

Query: 180 WWFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL-- 235
            +F   +  AQ +    +F+T   Y+I P  A+ F   +E  A  TY   I+     L  
Sbjct: 226 IFFRALILGAQGVFYNLFFLT---YMIMPAAAHRFVGYLEEEAVRTYSHCIQDIESNLVP 282

Query: 236 --KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  PAP +AI Y+                   R P+   + DV   +R DE  H
Sbjct: 283 EWRNAPAPQIAIDYW-------------------RLPQNATMLDVIYAVRADETSH 319


>gi|389744708|gb|EIM85890.1| alternative oxidase [Stereum hirsutum FP-91666 SS1]
          Length = 331

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE+IA VP     +  H+       R + ++     E+ NE  HL+    L    W
Sbjct: 120 RILFLESIAGVPGMVAATCRHLKSLRLMRRDSGWIHTLLEEAENERMHLMTFMTLRNPGW 179

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKL---K 236
           +F R L       +Y +  F Y+ISPR+ + F   +E  A  TY + I+  +  +L    
Sbjct: 180 FF-RMLILGAQGVFYNMFFFSYLISPRVCHRFVGYLEEEAVITYSRCIQEMEAGRLPLWS 238

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             PAP +A  Y+              RL    RP    + DV   +R DE  H
Sbjct: 239 NKPAPEIAKDYW--------------RL----RPD-ATMLDVIYAVRSDETSH 272


>gi|330790445|ref|XP_003283307.1| hypothetical protein DICPUDRAFT_44721 [Dictyostelium purpureum]
 gi|325086732|gb|EGC40117.1| hypothetical protein DICPUDRAFT_44721 [Dictyostelium purpureum]
          Length = 320

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 22/182 (12%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHH 168
           V +  +R++      VLETIA VP     ++LH+  +       +++K    ES NE  H
Sbjct: 101 VSNLFFREKYIHYAIVLETIASVPGLCGGAMLHL-RALRTMESNNWIKALMDESENERIH 159

Query: 169 LLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
           L+   EL       +R +       ++ + +  Y ISP++ +     +E  A +TY  F+
Sbjct: 160 LMSFIELT-KPTLIERTMVAAAQAVFWNLYLVGYAISPKIMHRVVGYLEHEAVKTYTNFL 218

Query: 229 K-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
                 K++ +PA  +AI+Y+                     P    L D+ L IR+DE 
Sbjct: 219 ADIDAGKVENIPASKLAIEYWG-------------------LPADATLRDMILVIREDEM 259

Query: 288 EH 289
           +H
Sbjct: 260 DH 261


>gi|170090173|ref|XP_001876309.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649569|gb|EDR13811.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 378

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 72/182 (39%), Gaps = 25/182 (13%)

Query: 113 LYRDRDY-ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
           L  DR +  R  VLE+IA VP     ++ H+       R + ++     E+ NE  HL+ 
Sbjct: 153 LLDDRAWLTRILVLESIAGVPGMVAATLRHLTSLRLMRRDSGWIHTCLEEAENERMHLMT 212

Query: 172 MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI--- 228
              L   +    R +       +Y +  F Y+ISPR+ + F   +E  A  TY + I   
Sbjct: 213 FMTLRKPSIIL-RAIVLAAQGVFYNLFFFSYLISPRICHRFVGYLEEEAVVTYTRCIADL 271

Query: 229 -KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
              +  +    PAP ++I Y+                   R P    L DV   +R DE 
Sbjct: 272 EAGRIPEWSNKPAPEISIDYW-------------------RLPPDAKLLDVLYAVRSDET 312

Query: 288 EH 289
            H
Sbjct: 313 TH 314


>gi|257481048|gb|ACV60633.1| mitochondrial alternative oxidase 1a [Pinus pinea]
 gi|257481052|gb|ACV60635.1| mitochondrial alternative oxidase 1a [Pinus pinea]
 gi|257481056|gb|ACV60637.1| mitochondrial alternative oxidase 1a [Pinus pinea]
 gi|257481058|gb|ACV60638.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 31/168 (18%)

Query: 128 IARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
           +A VP      +LH      +E  G W     +K    E+ NE  HL+   E+     W+
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKTLLDEAENERMHLMTFMEVS-QPRWY 54

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAP 241
           +R L   +   ++      Y+ SP++A+     +E  A  +Y +F+K   +  ++ +PAP
Sbjct: 55  ERALVFTVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAP 114

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A+AI Y+                   R P    L DV + +R DEA H
Sbjct: 115 AIAIDYW-------------------RLPADSTLRDVVMVVRADEAHH 143


>gi|358348724|ref|XP_003638393.1| Alternative oxidase [Medicago truncatula]
 gi|355504328|gb|AES85531.1| Alternative oxidase [Medicago truncatula]
          Length = 262

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 152 ADYLKVHFAESWNEMHHLLIME 173
           ADYLKVHFAESWNEMHHLLIME
Sbjct: 58  ADYLKVHFAESWNEMHHLLIME 79


>gi|410620808|ref|ZP_11331666.1| alternative oxidase 2, mitochondrial [Glaciecola pallidula DSM
           14239 = ACAM 615]
 gi|410159691|dbj|GAC27040.1| alternative oxidase 2, mitochondrial [Glaciecola pallidula DSM
           14239 = ACAM 615]
          Length = 214

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 81/197 (41%), Gaps = 21/197 (10%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRAD 153
           F   +   LT+ +    D  +  R   R  VLET+A VP      + HM          +
Sbjct: 26  FSDRLAFRLTKLLRFFADLFFAKRYGHRAVVLETVAAVPGMVGGMIRHMRSLRRMKDDRE 85

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFS 213
            +     E+ NE  HLL   ++     +F+R L       ++   +F+YV+S R A+   
Sbjct: 86  AIHTLLEEAENERMHLLTFVQIA-QPSFFERMLILLAQGVFFTSFLFLYVVSGRTAHRLV 144

Query: 214 ECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272
              E  A  +Y +++ +    +L+ + AP +AI Y+                   + P  
Sbjct: 145 GYFEEEAVYSYSEYLAEVDSGRLENVNAPQIAIDYW-------------------KLPAD 185

Query: 273 ENLYDVFLNIRDDEAEH 289
             L DV + +R+DEA H
Sbjct: 186 ATLRDVIIAVRNDEAGH 202


>gi|388516585|gb|AFK46354.1| unknown [Medicago truncatula]
          Length = 131

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 21/123 (17%)

Query: 168 HLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
           HL+ M EL   +W  +R L       ++      Y++SP++A+ F   +E  A  +Y ++
Sbjct: 2   HLMTMVELVKPSW-HERLLVITAQGVFFNGFFVFYILSPKIAHRFVGYLEEEAVISYTQY 60

Query: 228 IKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           + A +  K++ +PAPA+AI Y+              RLPN        L DV   IR DE
Sbjct: 61  LNAIESGKVENVPAPAIAIDYW--------------RLPND-----ATLKDVVTVIRADE 101

Query: 287 AEH 289
           A H
Sbjct: 102 AHH 104


>gi|241949571|ref|XP_002417508.1| (constitutive) alternative oxidase 1, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
 gi|223640846|emb|CAX45161.1| (constitutive) alternative oxidase 1, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 389

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 30/178 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE+IA VP      V H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 184 TRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIGKPS 243

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLK 236
            WF R   ++ Q +    +F+   +Y+++PR  + F   +E  A  TY   I    +  K
Sbjct: 244 -WFTRSIIYIGQGVFTNIFFL---VYLMNPRYCHRFVGYLEEEAVRTYTHLIHELNDPNK 299

Query: 237 -----KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                K+  P +A++Y+                P+S      +  D+ L IR DEA+H
Sbjct: 300 LPDFEKLSIPTIAVQYW------------PELTPDS------SFKDLILRIRADEAKH 339


>gi|301106717|ref|XP_002902441.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|262098315|gb|EEY56367.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 325

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 29/181 (16%)

Query: 116 DRDYA-RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE 174
           +RD+  R   LE+IA VP      + H+       R   ++     E+ NE  HLLI   
Sbjct: 143 ERDWLHRCLFLESIAGVPGMVGGMLRHLRSLRRMKRDYGWIHTLLEEAENERMHLLIFLH 202

Query: 175 LGGNAWWFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK--- 229
           L    W+F   +  AQ +    +F+T   Y++SP+  + F   +E  A +TY   ++   
Sbjct: 203 LKQPGWFFRTLVIGAQGVFFNGFFLT---YLVSPKTCHRFVGYLEEEAVKTYTYLLQDIE 259

Query: 230 -AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAE 288
               +  K+  AP +A  YY                   + P+  N+YD+   IR DE  
Sbjct: 260 DGHLDGWKQKQAPLIAQTYY-------------------KLPEGSNIYDMIKCIRADECN 300

Query: 289 H 289
           H
Sbjct: 301 H 301


>gi|393726239|ref|ZP_10346166.1| alternative oxidase [Sphingomonas sp. PAMC 26605]
          Length = 237

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 25/182 (13%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRAD--YLKVHFAESWNEMHH 168
           D  +  R   R  VLET+A VP    +  +  +     W R D  +++    E+ NE  H
Sbjct: 47  DIFFAKRYGHRAIVLETVAAVP--GMVGAMFTHLKCLRWMRDDQGWIRTLMEEAENERMH 104

Query: 169 LLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
           L+   E+    W F+R +   +   +      +Y++S + A+      E  A  +Y  ++
Sbjct: 105 LMTFVEIAKPTW-FERTVILLVQGVFLIAFSLLYLLSAKTAHRVVGYFEEEAVTSYTLYL 163

Query: 229 KAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
           +   E +   +PAPA+A  Y+   D                      L DV L +RDDEA
Sbjct: 164 QEIDEGRSPNVPAPAIARHYWKMAD-------------------DATLRDVVLVVRDDEA 204

Query: 288 EH 289
            H
Sbjct: 205 HH 206


>gi|393243185|gb|EJD50700.1| alternative oxidase [Auricularia delicata TFB-10046 SS5]
          Length = 370

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 66/173 (38%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE+IA VP     +  H+       R A ++     E+ NE  HL+    L   + 
Sbjct: 144 RILFLESIAGVPGMVAATCRHLRSLRLMRRDAGWIHTLLEEAENERMHLMTFMTLRNPSI 203

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI----KAQGEKLK 236
            F R L       +Y +  F Y+ SP+  + F   +E  A  TY + I         +  
Sbjct: 204 GF-RALILGAQGVFYNLFFFSYLFSPKTCHRFVGILEEEAVYTYTQCISDIKNGHLPEWA 262

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             PAP +AI Y+                   R PK   L DV   +R DE+ H
Sbjct: 263 DKPAPEIAIDYW-------------------RLPKNATLLDVIYAVRSDESTH 296


>gi|190349103|gb|EDK41695.2| hypothetical protein PGUG_05793 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 347

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 29/177 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE+IA VP      + H++      R   +++    E++NE  HLL   +LG  +
Sbjct: 144 TRIIFLESIAGVPGMVAAFLRHLHSLRLLKRDRAWIETLLDEAYNERMHLLTFIKLGQPS 203

Query: 180 WWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI-KAQGEKL 235
            WF RF+    Q +    +F+    Y++ P+  + F   +E  A  TY   + +   +KL
Sbjct: 204 -WFTRFIIYVGQGVFCNAFFLC---YLMVPKYCHRFVGYIEEEAVSTYSHLVYELDTKKL 259

Query: 236 KK---MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            K   M  P VAI+Y+T       DE  T R             D+ L +R DEA+H
Sbjct: 260 PKFDHMRVPPVAIQYWTE-----LDENSTFR-------------DLILRVRADEAKH 298


>gi|342890541|gb|EGU89342.1| hypothetical protein FOXB_00140 [Fusarium oxysporum Fo5176]
          Length = 341

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 30/215 (13%)

Query: 95  EQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADY 154
           EQ V+     + ++    L   +   RF  LE+IA VP      + H+       R   +
Sbjct: 116 EQQVDKNNPTTSVVAQKPLTEAQWLTRFIFLESIAGVPGMVGGMLRHLSSLRRMKRDNGW 175

Query: 155 LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFS 213
           ++    ES+NE  HLL   ++    W+    +    A   +F  +F+ Y++SP++ + F 
Sbjct: 176 IETLLEESYNERMHLLTFMKMCEPGWFMKVMIIG--AQGVFFNGLFICYLLSPKIVHRFV 233

Query: 214 ECVESHAFETYDKFIKA-QGEKLKK-----MPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
             +E  A  TY + IK  +   L K        P +AI+Y+               +P  
Sbjct: 234 GYLEEEAVHTYTRCIKEIEDGHLPKWSDPNFRIPDIAIQYWN--------------IPEE 279

Query: 268 RRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNL 302
           R    + + D+ L IR DEA H        T GNL
Sbjct: 280 R----QTMKDLILYIRADEAVH---RGVNHTLGNL 307


>gi|62241308|dbj|BAD93711.1| alternative oxidase 1b [Candida maltosa]
          Length = 348

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 30/178 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A VP      + H++      R   +++  + E++NE  HLL   ++G  +
Sbjct: 143 TRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLYDEAYNERMHLLTFIKIGKPS 202

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI-----KAQ 231
            WF R   ++ Q +    +F+   +Y+++PR  + F   +E  A  TY   I     K +
Sbjct: 203 -WFTRSIIYVGQGVFTNVFFL---LYLLNPRYCHRFVGYLEEEAVRTYTHLIEEIDTKGK 258

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               + M  P +A++Y+                P S         D+ L IR DEA+H
Sbjct: 259 LPGFENMKIPEIAVQYW------------PELTPES------TFRDLILRIRADEAKH 298


>gi|87199593|ref|YP_496850.1| alternative oxidase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135274|gb|ABD26016.1| alternative oxidase [Novosphingobium aromaticivorans DSM 12444]
          Length = 229

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 35/196 (17%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYL 155
            T+++    D  + +R   R  VLET+A VP     ++ H      M +  GW      +
Sbjct: 25  FTKALRWCADTFFAERYGHRAVVLETVAAVPGMVGATINHLACLRRMCDDKGW------I 78

Query: 156 KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSEC 215
           K    E+ NE  HL+   E+      F+R +   +   +Y     +Y++SP+ A+     
Sbjct: 79  KTLMDEAENERMHLMTFIEISKPT-LFERAVIMGVQWVFYLFFFGLYLVSPKTAHRVVGY 137

Query: 216 VESHAFETYDKFIKA--QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIE 273
            E  A  +Y  ++    QG     +PAPA+A +Y+               LP++      
Sbjct: 138 FEEEAVISYTHYLAEIDQGRS-ANVPAPAIAKRYWG--------------LPDN-----A 177

Query: 274 NLYDVFLNIRDDEAEH 289
            L DV L +R DEA H
Sbjct: 178 MLRDVVLVVRADEAHH 193


>gi|254418793|ref|ZP_05032517.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
 gi|196184970|gb|EDX79946.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
          Length = 230

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 33/186 (17%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYLKVHFAESWN 164
           D  +  R   R  VLET+A VP     ++ H      M +  GW      ++    E+ N
Sbjct: 36  DTFFAKRYGHRAVVLETVAAVPGMVGATLTHLKALRRMSDDRGW------IRTLMDEAEN 89

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E  HL+   E+      F+RF+   +   +Y     +Y++SPR A+      E  A  +Y
Sbjct: 90  ERMHLMTFIEVCQPTL-FERFIVMAVQWLFYLFFFGLYLVSPRTAHRVVGYFEEEAVISY 148

Query: 225 DKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
             ++    E + +  PAP +A  Y+               LP S       L DV L +R
Sbjct: 149 THYLAEIDEGRSENAPAPKIARDYWG--------------LPAS-----ATLRDVVLVVR 189

Query: 284 DDEAEH 289
            DEA H
Sbjct: 190 ADEAHH 195


>gi|146412117|ref|XP_001482030.1| hypothetical protein PGUG_05793 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 347

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 29/177 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE+IA VP      + H++      R   +++    E++NE  HLL   +LG  +
Sbjct: 144 TRIIFLESIAGVPGMVAAFLRHLHSLRLLKRDRAWIETLLDEAYNERMHLLTFIKLGQPS 203

Query: 180 WWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI-KAQGEKL 235
            WF RF+    Q +    +F+    Y++ P+  + F   +E  A  TY   + +   +KL
Sbjct: 204 -WFTRFIIYVGQGVFCNAFFLC---YLMVPKYCHRFVGYIEEEAVSTYSHLVYELDTKKL 259

Query: 236 KK---MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            K   M  P VAI+Y+T       DE  T R             D+ L +R DEA+H
Sbjct: 260 PKFDHMRVPPVAIQYWTE-----LDENSTFR-------------DLILRVRADEAKH 298


>gi|336470634|gb|EGO58795.1| mitochondrial Alternative oxidase [Neurospora tetrasperma FGSC
           2508]
 gi|350291699|gb|EGZ72894.1| mitochondrial alternative oxidase [Neurospora tetrasperma FGSC
           2509]
          Length = 362

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           I+ EQ V+     +       L   +   RF  LE+IA VP      + H++      R 
Sbjct: 129 IRPEQQVDKHHPTTATSADKPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRD 188

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAY 210
             +++    ES+NE  HLL   ++          +    A   +F  +F+ Y+ISP++ +
Sbjct: 189 NGWIETLLEESYNERMHLLTFMKMCEPGLLMKTLILG--AQGVFFNAMFLSYLISPKITH 246

Query: 211 HFSECVESHAFETYDKFIKAQGE------KLKKMPAPAVAIKYYTGGDLYLFDEFQTARL 264
            F   +E  A  TY + I+   E      + +K   P +A++Y+              R+
Sbjct: 247 RFVGYLEEEAVHTYTRCIREIEEGHLPKWRDEKFEIPEMAVRYW--------------RM 292

Query: 265 PNSRRPKIENLYDVFLNIRDDEAEH 289
           P  +R     + D+   IR DEA H
Sbjct: 293 PEGKR----TMKDLIHYIRADEAVH 313


>gi|119713421|gb|ABL97483.1| possible alternative respiratory pathway oxidase [uncultured marine
           bacterium HF130_81H07]
          Length = 213

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 87/217 (40%), Gaps = 21/217 (9%)

Query: 74  NDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPY 133
           N + PP   +  A  K  I    S  + +T+ +    D L++ R   R  VLET+A VP 
Sbjct: 3   NQELPPNMKNEIAGHKLPISISDSFALGITKFLRNSADFLFKKRYGHRAVVLETVAAVPG 62

Query: 134 FAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVA 193
                V H+            ++    E+ NE  HL+   E+      F+RFL     + 
Sbjct: 63  MVAGVVHHLRSLRRMQDDNGLIREMLEEAENERMHLMTFIEI-AQPSTFERFLIFLAQIG 121

Query: 194 YYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGD 252
           +     F+Y+   R A+      E  A  +Y +++ +    +++   AP +AI Y+    
Sbjct: 122 FGTFYTFLYIFFNRTAHRMIGYFEEEAVVSYTEYLDEIDKGQIENTQAPEIAINYWN--- 178

Query: 253 LYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                             K  +L DV + +R+DEA H
Sbjct: 179 ----------------LAKDASLRDVVIAVRNDEAGH 199


>gi|357487713|ref|XP_003614144.1| Alternative oxidase [Medicago truncatula]
 gi|355515479|gb|AES97102.1| Alternative oxidase [Medicago truncatula]
          Length = 136

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 152 ADYLKVHFAESWNEMHHLLIME 173
           ADYLKVHFAESWNEMHHLLIME
Sbjct: 105 ADYLKVHFAESWNEMHHLLIME 126


>gi|167518319|ref|XP_001743500.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778599|gb|EDQ92214.1| predicted protein [Monosiga brevicollis MX1]
          Length = 220

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 32/177 (18%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A +P     S+ H+    G  R   ++     E+ NE  HLL   ++     
Sbjct: 46  RAIFLETVAGIPGMVAGSLRHLRSLRGMQRDNGWIHTLLEEAENERMHLLTFTKVKQPGI 105

Query: 181 WFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKM 238
            F   +  AQ I    YFV    Y++SPR  + F   +E  A +TY   I+A  + +  M
Sbjct: 106 IFRSMVLAAQGIMWNAYFVA---YLVSPRTCHRFIGYLEEEAVKTYSHAIEALDKGM--M 160

Query: 239 P------APAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           P      AP +A  Y+   D  L                   + DV L +R DEA H
Sbjct: 161 PTWNNKEAPEIAKTYWGLADDAL-------------------MRDVLLAVRADEANH 198


>gi|257481046|gb|ACV60632.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 31/168 (18%)

Query: 128 IARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
           +A VP      +LH      +E  G W     ++    E+ NE  HL+   E+     W+
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGW-----IRTLLDEAENERMHLMTFMEV-SQPRWY 54

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAP 241
           +R L   +   ++      Y+ SP++A+     +E  A  +Y +F+K   +  ++ +PAP
Sbjct: 55  ERALVFTVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAP 114

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A+AI Y+                   R P    L DV + +R DEA H
Sbjct: 115 AIAIDYW-------------------RLPADSTLRDVVMVVRADEAHH 143


>gi|381396187|ref|ZP_09921879.1| alternative oxidase 1a, mitochondrial [Glaciecola punicea DSM 14233
           = ACAM 611]
 gi|379328367|dbj|GAB57012.1| alternative oxidase 1a, mitochondrial [Glaciecola punicea DSM 14233
           = ACAM 611]
          Length = 217

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 23/190 (12%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAE 161
           LT+ +    D  +  R   R  VLET+A VP      V HM          + +     E
Sbjct: 34  LTKLLRFFADHFFAKRYGHRAVVLETVAAVPGMVAGMVRHMRSLRRMKDDREAIHTLLEE 93

Query: 162 SWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVF-MYVISPRMAYHFSECVESHA 220
           + NE  HL+   ++   +  F+R+L   +A  ++F + F +YV+S R A+      E  A
Sbjct: 94  AENERMHLMTFIKIAQPS-LFERWLII-LAQGFFFASFFILYVVSGRTAHRLVGYFEEEA 151

Query: 221 FETYDKFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVF 279
             +Y +++ A     L+ +PAP +AI Y+                     PK   L DV 
Sbjct: 152 VYSYTEYLAAVDSGLLENVPAPDIAIDYWN-------------------LPKDARLRDVI 192

Query: 280 LNIRDDEAEH 289
           + +R DEA H
Sbjct: 193 IVVRQDEAGH 202


>gi|342871326|gb|EGU73992.1| hypothetical protein FOXB_15497 [Fusarium oxysporum Fo5176]
          Length = 345

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 26/215 (12%)

Query: 95  EQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADY 154
           EQ V+     + I+    L   +   RF  LE+IA VP      + H+       R   +
Sbjct: 116 EQQVDKNNPTTSIVAQKPLTEAQWLTRFIFLESIAGVPGMVGGMLRHLSSLRRMKRDNGW 175

Query: 155 LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFS 213
           ++    ES+NE  HLL   ++    W+    +    A   +F  +F+ Y+ SP++ + F 
Sbjct: 176 IETLLEESYNERMHLLTFMKMCEPGWFMKVMIIG--AQGVFFNGLFVCYLFSPKIVHRFV 233

Query: 214 ECVESHAFETYDKFIKAQGEK-LKKMPAPA-----VAIKYYTGGDLYLFDEFQTARLPNS 267
             +E  A  TY + IK   E  L K   P+     +AI+ +    L+L   F        
Sbjct: 234 GYLEEEAVHTYTRCIKEIEEGHLPKWSDPSFRIPDIAIQVF---GLHLQSTF-------- 282

Query: 268 RRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNL 302
               +  + D+ L IR DEA H        T GNL
Sbjct: 283 ---GVHTMKDLILYIRADEAVH---RGVNHTLGNL 311


>gi|254420740|ref|ZP_05034464.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
 gi|196186917|gb|EDX81893.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
          Length = 239

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 35/187 (18%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYLKVHFAESWN 164
           D  +  R   R  VLET+A VP     ++ H      M +  GW R          E+ N
Sbjct: 47  DTFFAKRYGHRAIVLETVAAVPGMVGATIQHLTCLRRMKDDDGWIRTL------MEEAEN 100

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFET 223
           E  HL+   E+     +F+R + Q IA A ++V  F+ Y++S R A+      E  A  +
Sbjct: 101 ERMHLMTFIEVA-KPTYFERLVIQ-IAQAVFYVGFFLLYLVSARTAHRVVGYFEEEAVIS 158

Query: 224 YDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNI 282
           Y  ++K   E +   +PAP +A  Y+                P++       L DV L +
Sbjct: 159 YTLYLKEIDEGRSPNVPAPEIAKHYWKMA-------------PDA------TLRDVVLVV 199

Query: 283 RDDEAEH 289
           R DEA H
Sbjct: 200 RADEAHH 206


>gi|294655674|ref|XP_457848.2| DEHA2C03828p [Debaryomyces hansenii CBS767]
 gi|199430515|emb|CAG85893.2| DEHA2C03828p [Debaryomyces hansenii CBS767]
          Length = 338

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 27/176 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE+IA VP      + H++      R   +++    E++NE  HLL   +LG  +
Sbjct: 134 TRCIFLESIAGVPGMVAAFIRHLHSLRLLRRDKAWIETLLDEAYNERMHLLTFIKLGRPS 193

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLK 236
            WF R   ++ Q +    +F+    Y+I+P+  + F   +E  A  TY   +    E+LK
Sbjct: 194 -WFTRSIIYIGQGVFCNLFFMC---YLINPKYCHRFVGYLEEEAVSTYTHLL----EELK 245

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIE---NLYDVFLNIRDDEAEH 289
                         G L  FD  Q   +     P+++   +  D+ L IR DEA+H
Sbjct: 246 M-------------GKLKEFDNIQIPAISWQYWPELDEKSSFTDLILRIRADEAKH 288


>gi|209880133|ref|XP_002141506.1| alternative oxidase family protein [Cryptosporidium muris RN66]
 gi|209557112|gb|EEA07157.1| alternative oxidase family protein [Cryptosporidium muris RN66]
          Length = 336

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 63/172 (36%), Gaps = 22/172 (12%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LETIA VP      V H++      R   ++     E+ NE  HL+I   L     
Sbjct: 162 RIVFLETIAGVPGMVGAMVRHLHSLRRMERDYGWIHTLLEEAENERMHLMISLLLRHPPS 221

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKM- 238
            F R         +       Y ISP+  + F   +E  A  TY + I      KL +  
Sbjct: 222 LFVRLSVLGAQFGFLIYYTLCYAISPKYCHRFVGYLEEEAVRTYTRLISDIDLGKLPEFT 281

Query: 239 -PAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            PAP  A  YY                     PK   L DVFL +R DE+ H
Sbjct: 282 SPAPKYAKLYYG-------------------LPKDATLKDVFLAMRRDESHH 314


>gi|85106053|ref|XP_962086.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
 gi|28923681|gb|EAA32850.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
          Length = 362

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           I+ EQ V+     +       L   +   RF  LE+IA VP      + H++      R 
Sbjct: 129 IRPEQQVDKHHPTTATSADKPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRD 188

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAY 210
             +++    ES+NE  HLL   ++          +    A   +F  +F+ Y+ISP++ +
Sbjct: 189 NGWIETLLEESYNERMHLLTFMKMCEPGLLMKTLILG--AQGVFFNAMFLSYLISPKITH 246

Query: 211 HFSECVESHAFETYDKFIK--AQGEKLK----KMPAPAVAIKYYTGGDLYLFDEFQTARL 264
            F   +E  A  TY + I+   +G   K    K   P +A++Y+              R+
Sbjct: 247 RFVGYLEEEAVHTYTRCIREIEEGHLPKWSDEKFEIPEMAVRYW--------------RM 292

Query: 265 PNSRRPKIENLYDVFLNIRDDEAEH 289
           P  +R     + D+   IR DEA H
Sbjct: 293 PEGKR----TMKDLIHYIRADEAVH 313


>gi|281211621|gb|EFA85783.1| alternative oxidase [Polysphondylium pallidum PN500]
          Length = 317

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 22/167 (13%)

Query: 124 VLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 183
           VLET+A VP      + H+ ++       +++K+   E+ NE  HL+   E+       +
Sbjct: 121 VLETVAAVPGMVAGMLQHL-KTLRRMEHNNWIKILLDEAENERMHLMTFMEISMPTK-LE 178

Query: 184 RFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPA 242
           R L      AY+   +  Y+ISP+ A+ F+  +E  A  TY   +      K++ + AP 
Sbjct: 179 RNLITLAQGAYWNAFLLFYLISPKTAHRFTGYLEEEAVITYTNMLHDLDAGKVENVEAPQ 238

Query: 243 VAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +A +Y+               LP+  +     L DV L IR DE +H
Sbjct: 239 IAREYWG--------------LPDDAK-----LRDVILVIRQDEVDH 266


>gi|3023302|sp|Q01355.1|AOX_NEUCR RecName: Full=Alternative oxidase, mitochondrial; Short=ALTOX;
           Flags: Precursor
 gi|1161144|gb|AAC37481.1| alternative oxidase [Neurospora crassa]
 gi|24061748|gb|AAN39882.1| alternative oxidase [Neurospora crassa]
          Length = 362

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 92  IKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR 151
           I+ EQ V+     +       L   +   RF  LE+IA VP      + H++      R 
Sbjct: 129 IRPEQQVDKHHPTTATSADKPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRD 188

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAY 210
             +++    ES+NE  HLL   ++          +    A   +F  +F+ Y+ISP++ +
Sbjct: 189 NGWIETLLEESYNERMHLLTFMKMCEPGLLMKTLILG--AQGVFFNAMFLSYLISPKITH 246

Query: 211 HFSECVESHAFETYDKFIK--AQGEKLK----KMPAPAVAIKYYTGGDLYLFDEFQTARL 264
            F   +E  A  TY + I+   +G   K    K   P +A++Y+              R+
Sbjct: 247 RFVGYLEEEAVHTYTRCIREIEEGHLPKWSDEKFEIPEMAVRYW--------------RM 292

Query: 265 PNSRRPKIENLYDVFLNIRDDEAEH 289
           P  +R     + D+   IR DEA H
Sbjct: 293 PEGKR----TMKDLIHYIRADEAVH 313


>gi|392577482|gb|EIW70611.1| hypothetical protein TREMEDRAFT_28860 [Tremella mesenterica DSM
           1558]
          Length = 363

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R  +LE+ A VP     ++ H+       R   ++     E+ NE  HLL    +   +W
Sbjct: 145 RIILLESFAGVPGMVAGTLRHLRSLRRLRRDGGWIHTLLEEAENERMHLLTFMTIAQPSW 204

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL----K 236
              R          Y +    Y+I+P+ A+ F   +E  A +TY   ++   + L     
Sbjct: 205 -LTRVAVLGAQGVMYNLLFATYLITPKTAHRFVAALEEEAVKTYTHCVEDMQKGLVPEWD 263

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +PAP +AI Y+              RLP S +     L DV   +R DEA H
Sbjct: 264 DVPAPQIAIDYW--------------RLPQSAK-----LIDVIRAVRADEATH 297


>gi|452753499|ref|ZP_21953223.1| Alternative oxidase [alpha proteobacterium JLT2015]
 gi|451959189|gb|EMD81621.1| Alternative oxidase [alpha proteobacterium JLT2015]
          Length = 229

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 33/203 (16%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFG 147
           F   V    T+++    D  + +R   R  VLET+A VP     ++ H      M +  G
Sbjct: 17  FSDRVAFGFTKALRWCADTFFAERYGHRAVVLETVAAVPGMVGATINHLACLRRMCDDKG 76

Query: 148 WWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPR 207
           W      +K    E+ NE  HL+   E+      F+R +   +   +Y     +Y++S +
Sbjct: 77  W------IKTLMDEAENERMHLMTFIEISKPT-LFERAVIIGVQWVFYLFFFALYLVSSK 129

Query: 208 MAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPN 266
            A+      E  A  +Y  ++    E +   +PAP +A KY+               LP+
Sbjct: 130 TAHRVVGYFEEEAVISYTHYLTEIDEGRSDNVPAPEIAKKYWD--------------LPD 175

Query: 267 SRRPKIENLYDVFLNIRDDEAEH 289
           S       L DV L +R DEA H
Sbjct: 176 S-----ATLRDVVLVVRADEAHH 193


>gi|159472945|ref|XP_001694605.1| alternative oxidase, isoform 1 [Chlamydomonas reinhardtii]
 gi|11245480|gb|AAG33633.1|AF314254_1 alternative oxidase 1 [Chlamydomonas reinhardtii]
 gi|9027543|gb|AAC05743.2| alternative oxidase [Chlamydomonas reinhardtii]
 gi|158276829|gb|EDP02600.1| alternative oxidase, isoform 1 [Chlamydomonas reinhardtii]
          Length = 360

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 26/174 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL--GGN 178
           R   LET+A  P      + H+       R   ++     E+ NE  HL+   +L   G 
Sbjct: 183 RMIFLETVAGCPGMVAGMLRHLKSLRSMSRDRGWIHTLLEEAENERMHLITFLQLRQPGP 242

Query: 179 AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA--QGEKLK 236
           A+     LAQ +    YF+    Y++SPR  + F   +E  A +TY   +     G   K
Sbjct: 243 AFRAMVILAQGVFFNAYFIA---YLLSPRTCHAFVGFLEEEAVKTYTHALVEIDAGRLWK 299

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHC 290
             PAP VA++Y+                    +P   N+ D+ L +R DEA H 
Sbjct: 300 DTPAPPVAVQYW------------------GLKPG-ANMRDLILAVRADEACHA 334


>gi|322697635|gb|EFY89413.1| Alternative oxidase [Metarhizium acridum CQMa 102]
          Length = 354

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 32/190 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE+IA VP      + H+       R   +++    ES+NE  HLL   ++    W
Sbjct: 155 RFVFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 214

Query: 181 WFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK--AQGEKLK 236
           +    +  AQ +     F+T   Y++ PR+ + F   +E  A  TY + I+    G   K
Sbjct: 215 FMKLMIIGAQGVFFNALFIT---YLLHPRIVHRFVGYLEEEAVHTYTRAIREIEDGHLPK 271

Query: 237 ----KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292
               K   P +A++Y+               +P   R     + D+ L IR DEA H   
Sbjct: 272 WADPKFQIPDIAVQYWN--------------MPEGNR----TMKDLILYIRADEAGH--- 310

Query: 293 MKACQTHGNL 302
                T GNL
Sbjct: 311 RGVNHTLGNL 320


>gi|328862264|gb|EGG11365.1| hypothetical protein MELLADRAFT_74045 [Melampsora larici-populina
           98AG31]
          Length = 387

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 28/176 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
           AR   LE+IA VP      + H        R   +++    E+ NE  HLL   ++    
Sbjct: 169 ARILFLESIAGVPGMVAAMLRHFKSLRMSGRDGGWIRTLLEEAENERMHLLTFMKIRQPG 228

Query: 180 WWFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGE 233
             F   +  AQ +    +F++   Y++SPR A+ F   +E  A  TY   I+     +  
Sbjct: 229 IIFRAMVLGAQGVFANLFFLS---YMVSPRAAHRFVGILEEEAVVTYSLAIRELETGRLP 285

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           + + MPAP +A  Y+               LP+++      + DV   +R DE+ H
Sbjct: 286 EWENMPAPQIAKDYWR-------------LLPDAK------MIDVLYAVRADESNH 322


>gi|402220460|gb|EJU00531.1| mitochondrial alternative oxidase [Dacryopinax sp. DJM-731 SS1]
          Length = 395

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 26/174 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE+IA VP     ++ H+       R   ++     E+ NE  HL+    +   + 
Sbjct: 171 RILFLESIAGVPGMVAATLRHLRSLRLMKRDGGWIHTLLEEAENERMHLMTFMAVKQPSL 230

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
            F R L       +Y +    Y+ISP++ + F  C+E  A  TY   IK     +  +  
Sbjct: 231 LF-RTLVLGAQGVFYNLFFLSYLISPKLCHRFVGCLEEEAVITYTHAIKELEAGRLPEWD 289

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARL-PNSRRPKIENLYDVFLNIRDDEAEH 289
            + AP +AI Y+              RL PN+       L DV   +R DE+ H
Sbjct: 290 NVQAPKIAIDYW--------------RLKPNA------TLLDVIYAVRSDESTH 323


>gi|85704383|ref|ZP_01035485.1| putative oxidase [Roseovarius sp. 217]
 gi|85670791|gb|EAQ25650.1| putative oxidase [Roseovarius sp. 217]
          Length = 221

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 37/191 (19%)

Query: 111 DALYRDRDYARFFVLETIARVPYFA------FISVLHMYESFGWWRRADYLKVHFAESWN 164
           DA +  R   R  VLET+A VP           S+ H+ +  GW R          E+ N
Sbjct: 45  DAFFSKRYGHRAVVLETVAAVPGMVGGLLRHLKSIRHIRDDQGWIREL------LDEAEN 98

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E  HL+    +   +   +R L     + +Y V  F Y+ +PR A+     +E  A  +Y
Sbjct: 99  ERMHLMTFIHIAQPSRA-ERMLIMVAQMIFYNVFFFTYLFAPRTAHRIVGYLEEEAVVSY 157

Query: 225 DKF---IKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLN 281
            ++   I A G+  + + AP +AI Y+  G              ++R      L DV + 
Sbjct: 158 TQYLAEIDAGGQ--ENVAAPQIAIDYWNLG-------------ADAR------LRDVVIR 196

Query: 282 IRDDEAEHCKT 292
           +R DEA H  T
Sbjct: 197 VRSDEAYHRDT 207


>gi|340373435|ref|XP_003385247.1| PREDICTED: alternative oxidase, mitochondrial-like [Amphimedon
           queenslandica]
          Length = 308

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 28/177 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP      + H+       R   ++     E+ NE  HLL    L    +
Sbjct: 134 RIIFLETVAGVPGMIAAMLRHLRSLRYLQRDHGWIHTLLEEAENERMHLLTALVLRKPGF 193

Query: 181 WFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFI----KAQGEK 234
            F RF    I     FVT+F   Y+ISP+  + F   +E  A +TY   +    +   + 
Sbjct: 194 LF-RFAV--IGAQGIFVTLFSAAYIISPKFCHRFVGYLEEEAVKTYTHCLECIDRGDLKV 250

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCK 291
             K  AP+++ KY+                   + P+   + DV L IR DEA HC+
Sbjct: 251 WAKTAAPSISQKYW-------------------QLPEGAMMRDVILAIRADEAHHCE 288


>gi|326427287|gb|EGD72857.1| alternative oxidase [Salpingoeca sp. ATCC 50818]
          Length = 319

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 69/175 (39%), Gaps = 28/175 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A +P     S+ H+       R   ++     E+ NE  HLL   +L     
Sbjct: 145 RVIFLETVAGIPGMVAGSLRHLKSLRLMKRDHGWIHTLLEEAENERMHLLTFMQLREPGL 204

Query: 181 WFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL--- 235
            F   +  AQ +    YF+    Y+ SPR  + F   +E  A +TY   IKA  + L   
Sbjct: 205 LFRGMVLAAQGVFWNLYFLG---YLASPRTCHRFVGYLEEEAVKTYTDAIKALDDGLMPT 261

Query: 236 -KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               PAP +A  Y+   D  L                   + DV L +R DEA H
Sbjct: 262 WTNKPAPDIAKTYWGLADDAL-------------------MRDVLLAVRADEANH 297


>gi|296418840|ref|XP_002839033.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635027|emb|CAZ83224.1| unnamed protein product [Tuber melanosporum]
          Length = 383

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 28/176 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
           ARF  LE+IA VP  A   + H+       R   +++    E++NE  HLL         
Sbjct: 144 ARFIFLESIAGVPGMAAGMIRHLNSLRRLKRDNAWIETLLEEAYNERLHLLTFLHYRQPG 203

Query: 180 WWFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI----KAQGE 233
            +    +  AQ I    +F++   Y++SPR  + F   +E  A  TY + I      +  
Sbjct: 204 LFMRTMILGAQGIFFNLFFIS---YLVSPRTCHRFVGYIEEEAVITYTRAIADIENGRIP 260

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           + + + AP +AIKY+  G             P++      N+ ++   IR DEA+H
Sbjct: 261 EWENLLAPDIAIKYFGLG-------------PDA------NMLELLKVIRADEAKH 297


>gi|257481050|gb|ACV60634.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 31/168 (18%)

Query: 128 IARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
           +A VP      +LH      +E  G W     +K    E+ NE  HL+   E+     W+
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKTLLDEAENERMHLMTFMEVS-QPRWY 54

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAP 241
           +R L   +   ++      Y+ SP++A+     +E  A  +Y +F+K   +  ++ +PAP
Sbjct: 55  ERALVFTVQGVFFSAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAP 114

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A AI Y+                   R P    L DV + +R DEA H
Sbjct: 115 ANAIDYW-------------------RLPADSTLRDVVMVVRADEAHH 143


>gi|378731675|gb|EHY58134.1| alternative oxidase AlxA [Exophiala dermatitidis NIH/UT8656]
          Length = 349

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 42/194 (21%)

Query: 121 RFFVLETIARVPYFA------FISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE 174
           RF  LET+A VP         F S+  M    GW      ++    +++NE  HLL   +
Sbjct: 147 RFIFLETVAGVPGMVGGMLRHFRSLRRMKRDNGW------IETLLEDAYNERMHLLTFLK 200

Query: 175 LGGNAWWFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQ 231
           +    W+    +  AQ +    +F+    Y++SP++ + F   +E  A +TY   I+  +
Sbjct: 201 MAEPGWFMKLMIMGAQGVFANGFFLA---YLVSPKICHRFVGYLEEEATKTYTYAIEDLE 257

Query: 232 GEKL---KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAE 288
             KL   + + AP +A+ Y+              ++P   R     + D+   IR DEA+
Sbjct: 258 NGKLPAWQNLEAPDIAVSYW--------------KMPEGHR----TMKDLLYYIRADEAK 299

Query: 289 HCKTMKACQTHGNL 302
           H +      T GNL
Sbjct: 300 HREI---HHTLGNL 310


>gi|320169629|gb|EFW46528.1| alternative oxidase isoform B [Capsaspora owczarzaki ATCC 30864]
          Length = 379

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 82/208 (39%), Gaps = 39/208 (18%)

Query: 116 DRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVH--FAESWNEMHHLLIME 173
           D+   R   LET+A VP      + H+ +S    RR D+  +H    E+ NE  HLL   
Sbjct: 198 DKWLTRIIFLETVAAVPGMVGAMIRHL-QSLRLMRR-DHGWIHTLLEEAENERMHLLTAL 255

Query: 174 ELGGNAWWFDR--FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQ 231
           +L   +  F       Q +    +F   F+Y+++PR  + F   +E  A  TY K +   
Sbjct: 256 QLKQPSQLFRLAVLAVQGVMTNTFF---FLYILAPRFVHRFVGYLEEEAVYTYTKCL--D 310

Query: 232 GEKLKKMP------APAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDD 285
             K  K+P      AP +AI Y+                   +  K   + DV   IR D
Sbjct: 311 DIKTGKLPEWKTGKAPEIAINYW-------------------KLDKAATMEDVIYAIRSD 351

Query: 286 EAEH---CKTMKACQTHGNLRSPHSYSE 310
           EA H     T       G  R+P+   E
Sbjct: 352 EAHHRLVNHTFANLHQLGQSRNPYGPGE 379


>gi|3023301|sp|Q00912.1|AOX_HANAN RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|218523|dbj|BAA00641.1| unnamed protein product [Pichia anomala]
 gi|6978940|dbj|BAA90763.1| alternative oxidase [Pichia anomala]
 gi|445371|prf||1909185A alternative oxidase
          Length = 342

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 29/177 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A VP      + H++      R   +++    E++NE  HLL   ++ GN 
Sbjct: 136 TRCIFLESVAGVPGMVAAFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFIKI-GNP 194

Query: 180 WWFDRF---LAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQG 232
            WF RF   + Q +    +F+   +Y+I PR  + F   +E  A  TY   IK     + 
Sbjct: 195 SWFTRFIIYMGQGVFANLFFL---VYLIKPRYCHRFVGYLEEEAVSTYTHLIKDIDSKRL 251

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            K   +  P ++  Y+T       +E  T R             D+   IR DE++H
Sbjct: 252 PKFDDVNLPEISWLYWTD-----LNEKSTFR-------------DLIQRIRADESKH 290


>gi|121712010|ref|XP_001273620.1| alternative oxidase, putative [Aspergillus clavatus NRRL 1]
 gi|119401772|gb|EAW12194.1| alternative oxidase, putative [Aspergillus clavatus NRRL 1]
          Length = 333

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 26/195 (13%)

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
           A+  ++   R   LE+IA VP      + H+       R   +++    ES+NE  HLL 
Sbjct: 122 AMTEEKYLIRNIFLESIAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEESYNERMHLLT 181

Query: 172 MEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-A 230
             ++      F R L       ++      Y+++P + + F   +E  A  TY + I   
Sbjct: 182 FLQMAEPG-LFLRLLVLGAQGVFFNAFFIAYLVNPVICHRFVGYLEEEAVITYTREIADI 240

Query: 231 QGEKLKK---MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
           +  KL K   + AP +A+KY+               +P   R    ++ D+ L IR DEA
Sbjct: 241 EAGKLPKWENLQAPEIAVKYWN--------------MPEGHR----SMRDLLLYIRADEA 282

Query: 288 EHCKTMKACQTHGNL 302
           +H    +   T GNL
Sbjct: 283 KH---REVNHTFGNL 294


>gi|378548285|sp|D5JAJ1.1|AOX_TRAHO RecName: Full=Ubiquinol oxidase; AltName: Full=Alternative oxidase
 gi|293338884|gb|ADE43749.1| alternative oxidase [Trachipleistophora hominis]
 gi|440492337|gb|ELQ74912.1| putative Alternative oxidase domain (AOX) protein
           [Trachipleistophora hominis]
          Length = 318

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 24/180 (13%)

Query: 113 LYRDRDYAR-FFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL- 170
           LY  +DY R   VLET+A +P        H+Y         + +K    E+ NE  HLL 
Sbjct: 140 LYFQKDYVRRVVVLETVAAIPGMVGGMFRHLYSLRNLEDNGEAIKKLVLEAENERQHLLT 199

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
            +  L  N    DR L +     ++   +  Y ++PR A+ F   +E  A  +YD F + 
Sbjct: 200 FLAVLKPNV--LDRMLIKLGQFLFFNGYMVFYFVAPRTAHRFVGYLEEEAVRSYDAFEEE 257

Query: 231 -QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                +K + AP ++  Y+                     P+   L DV   +R DEAEH
Sbjct: 258 ILLGHIKNVEAPRISKDYWN-------------------LPEEAMLIDVVRAVRADEAEH 298


>gi|380488128|emb|CCF37588.1| alternative oxidase [Colletotrichum higginsianum]
          Length = 235

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 34/192 (17%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            RF  LE+IA VP      + H+       R   +++    ES+NE  HLL   ++    
Sbjct: 35  VRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIESLLEESFNERMHLLTFMKMSEPG 94

Query: 180 WWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKM 238
           W+    +    A   +F  +F+ Y+I+P++ + F   +E  A  TY + +      L  +
Sbjct: 95  WFMKLMILG--AQGVFFNGMFLSYLIAPKITHRFVGYLEEEAVHTYTRCLYEI--DLGLL 150

Query: 239 PA--------PAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHC 290
           P         P +A++Y+              R+P  +R     + D+ + IR DEA H 
Sbjct: 151 PKWSDPNFTIPDIAVQYW--------------RIPEGKR----TMKDLIMYIRADEAVH- 191

Query: 291 KTMKACQTHGNL 302
                  T GNL
Sbjct: 192 --RGVNHTLGNL 201


>gi|361131765|gb|EHL03417.1| putative Alternative oxidase, mitochondrial [Glarea lozoyensis
           74030]
          Length = 269

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 30/190 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            RF  LE++A VP      + H+       R   +++    ES NE  HLL   ++    
Sbjct: 68  TRFVFLESVAGVPGMVAAMLRHLNSMRRLKRDNGWIETLLEESQNERMHLLTFLKMAEPG 127

Query: 180 WWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-AQGEKL-- 235
           W+    +    A   +F ++F+ Y++SPR  + F   +E  A  TY   I   +  KL  
Sbjct: 128 WFMKLMILG--AQGVFFNSMFLSYLVSPRTCHRFVGYLEEEAVLTYSLAISDLENGKLPL 185

Query: 236 ---KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292
                   P +A+ Y+              ++P  +R     + D+ L +R DEA+H   
Sbjct: 186 WTHPNFKVPDIAVDYW--------------KIPEDKR----TMRDLLLYVRADEAKH--- 224

Query: 293 MKACQTHGNL 302
            +   T GNL
Sbjct: 225 REVNHTLGNL 234


>gi|392591621|gb|EIW80948.1| alternative oxidase [Coniophora puteana RWD-64-598 SS2]
          Length = 382

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 24/174 (13%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
           +R   LE+IA VP      + H+       R + ++     E+ NE  HL+    L   +
Sbjct: 172 SRILFLESIAGVPGMVAAMLRHLGSLRLMRRDSGWIHTLLEEAENERMHLMTFMTLKQPS 231

Query: 180 WWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKL--- 235
            +F R L       ++ V    Y+ISPR+ + F   +E  A  TY + I+  +  +L   
Sbjct: 232 LFF-RALVLGAQGVFFNVFFLSYMISPRICHRFVGYLEEEAVVTYTRCIEEIEAGRLPAW 290

Query: 236 KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             MPAP +A  Y+                   R     NL DV   +R DE+ H
Sbjct: 291 SNMPAPEIAKDYW-------------------RLHPEANLLDVIYAVRSDESTH 325


>gi|257481044|gb|ACV60631.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 31/168 (18%)

Query: 128 IARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
           +A VP      +LH      +E  G W     +K    E+ NE  HL+   E+     W+
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKTLLDEAENERMHLMTFMEVS-QPRWY 54

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEK-LKKMPAP 241
           +R L   +   ++      Y+ SP++A+     +E  A  +Y +F+K   +  ++ +PAP
Sbjct: 55  ERALVFTVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAP 114

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A+AI Y+                   R P    L DV + +R  EA H
Sbjct: 115 AIAIDYW-------------------RLPADSTLRDVVMVVRAGEAHH 143


>gi|299132133|ref|ZP_07025328.1| Alternative oxidase [Afipia sp. 1NLS2]
 gi|298592270|gb|EFI52470.1| Alternative oxidase [Afipia sp. 1NLS2]
          Length = 220

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 18/151 (11%)

Query: 108 MVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYLKVHFAE 161
           M  +  +  R   +  VLET+  VP     ++LH      M +  GW      ++    E
Sbjct: 33  MAGNTFFNSRYGDQVIVLETVTAVPPMVVATLLHLKCLRRMLDDGGW------VRTFMDE 86

Query: 162 SWNEMHHLLIMEELGG-NAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           + ++  HL+    L   NAW  +RFL   +   +Y    F+Y+IS   A+  +      A
Sbjct: 87  AESQRTHLMAFVALAKPNAW--ERFLIVLVQGIFYNAYFFLYLISAGTAHRLAAYFAEQA 144

Query: 221 FETYDKFIKA--QGEKLKKMPAPAVAIKYYT 249
            + Y K++     GE+  + PAPA+AI Y+ 
Sbjct: 145 VQGYSKYLSQIESGERAMQ-PAPALAIAYWA 174


>gi|404252627|ref|ZP_10956595.1| alternative oxidase [Sphingomonas sp. PAMC 26621]
          Length = 228

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 33/194 (17%)

Query: 103 TESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYLK 156
           T  +  + D  +  R   R  VLET+A VP     ++ H      M    GW      ++
Sbjct: 27  TRLLRFIADTFFAKRYGHRAIVLETVAAVPGMVGATLTHLRCLRQMKPDRGW------IR 80

Query: 157 VHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECV 216
           +   E+ NE  HL+   E+      F+R +   +   +Y     +Y++SP+ A+      
Sbjct: 81  ILMEEAENERMHLMTFLEV-CKPTLFERLVVLVVQWLFYLGFFALYLLSPKTAHRLVGYF 139

Query: 217 ESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENL 275
           E  A  +Y  ++ +    +   +PAPA+A +Y+   D             N+       L
Sbjct: 140 EEEAVISYSHYLAEIDAGRSANVPAPAIARRYWGLSD-------------NA------TL 180

Query: 276 YDVFLNIRDDEAEH 289
            DV L +R DEA H
Sbjct: 181 RDVILVVRADEAHH 194


>gi|19547976|gb|AAL87459.1| alternative oxidase [Aspergillus fumigatus]
          Length = 149

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 29/169 (17%)

Query: 128 IARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFL- 186
           +A VP      + H+       R   +++    E++NE  HLL   +L    W F R + 
Sbjct: 1   VAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGW-FMRLMV 59

Query: 187 --AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKL---KKMPA 240
             AQ +    +F++   Y+ISPR  + F   +E  A  TY + IK  +  KL   +K+ A
Sbjct: 60  LGAQGVFFNGFFLS---YLISPRTCHRFVGYLEEEAVITYTRAIKDIETGKLPDWEKLDA 116

Query: 241 PAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           P +A++Y+               +P  +R     + D+ L +R DEA+H
Sbjct: 117 PEIAVQYWN--------------MPEGQR----KMRDLLLYVRADEAKH 147


>gi|148550731|ref|YP_001260170.1| alternative oxidase [Sphingomonas wittichii RW1]
 gi|402825917|ref|ZP_10875159.1| alternative oxidase [Sphingomonas sp. LH128]
 gi|148503150|gb|ABQ71403.1| Alternative oxidase [Sphingomonas wittichii RW1]
 gi|402260473|gb|EJU10594.1| alternative oxidase [Sphingomonas sp. LH128]
          Length = 229

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 33/203 (16%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFG 147
               V +  T+ +    D  +  R   R  VLET+A VP     ++ H      M +  G
Sbjct: 17  LSDKVALGFTKVLRWCADTFFAQRYGHRAVVLETVAAVPGMVGATINHLACLRRMCDDKG 76

Query: 148 WWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPR 207
           W      +K    E+ NE  HL+   E+     WF+R +   +   +Y     +Y++S +
Sbjct: 77  W------IKTLMDEAENERMHLMTFIEISKPT-WFERAVIIGVQWVFYVFFFALYLLSAK 129

Query: 208 MAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPN 266
            A+      E  A  +Y  ++    E +   +PAP +A +Y+                  
Sbjct: 130 TAHRVVGYFEEEAVISYTHYLAEIDEGRSANVPAPEIAKRYWG----------------- 172

Query: 267 SRRPKIENLYDVFLNIRDDEAEH 289
              P+   L DV L +R DEA H
Sbjct: 173 --LPEEATLRDVVLVVRADEAHH 193


>gi|380095711|emb|CCC07185.1| putative alternative oxidase [Sordaria macrospora k-hell]
          Length = 341

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 27/181 (14%)

Query: 116 DRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175
           ++   RF  LE+IA VP      + H++      R   +++    ES+NE  HLL   ++
Sbjct: 132 EQQLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKM 191

Query: 176 GGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIKAQGE- 233
                     +    A   +F  +F+ Y+ISP++ + F   +E  A  TY + I    E 
Sbjct: 192 CEPGLLMKTLILG--AQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCINEIEEG 249

Query: 234 -----KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAE 288
                + ++   P +A++Y+              R+P  +R     + D+   +R DEA 
Sbjct: 250 HLPKWRDERFQIPEMAVRYW--------------RMPEGKR----TMKDLIYYVRADEAV 291

Query: 289 H 289
           H
Sbjct: 292 H 292


>gi|395492241|ref|ZP_10423820.1| alternative oxidase [Sphingomonas sp. PAMC 26617]
          Length = 228

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 33/194 (17%)

Query: 103 TESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYLK 156
           T  +  + D  +  R   R  VLET+A VP     ++ H      M    GW      ++
Sbjct: 27  TRLLRFIADTFFAKRYGHRAIVLETVAAVPGMVGATLTHLRCLRQMKPDRGW------IR 80

Query: 157 VHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECV 216
           +   E+ NE  HL+   E+      F+R +   +   +Y     +Y++SP+ A+      
Sbjct: 81  ILMEEAENERMHLMTFLEV-CKPTLFERLVVLVVQWLFYLGFFALYLLSPKTAHRLVGYF 139

Query: 217 ESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENL 275
           E  A  +Y  ++ +    +   +PAPA+A +Y+   D             N+       L
Sbjct: 140 EEEAVISYTHYLAEIDAGRSANVPAPAIARRYWGLSD-------------NA------TL 180

Query: 276 YDVFLNIRDDEAEH 289
            DV L +R DEA H
Sbjct: 181 RDVILVVRADEAHH 194


>gi|224012252|ref|XP_002294779.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
 gi|220969799|gb|EED88139.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
          Length = 227

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 74/188 (39%), Gaps = 32/188 (17%)

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
           A+  D+   R   LET+A +P      + H        R    L +   E+ NE  HLL 
Sbjct: 52  AITTDKILNRAIFLETVAAIPGMVAAIIRHFRSLRNMARDGGMLNMFLEEANNERMHLLT 111

Query: 172 MEELGGNAWWFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFIK 229
              +    + F    A  I   + F + F  MY+ISP   + F   +E  A  TY K IK
Sbjct: 112 FIRMKDPGYLFR---ATVIGGQFAFGSAFLTMYMISPAFCHRFVGYIEEEACATYTKIIK 168

Query: 230 A-----QGEKL---KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLN 281
           A     +G  L   +   AP +A  Y+  G+                     ++ D+ L 
Sbjct: 169 AIEEAPEGTDLGNWRTEEAPKIAKGYWHLGEH-------------------GSVLDLMLA 209

Query: 282 IRDDEAEH 289
           +R DEAEH
Sbjct: 210 VRADEAEH 217


>gi|51701284|sp|Q8J1Z2.1|AOX_GELSS RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|24061746|gb|AAN39884.1| alternative oxidase [Gelasinospora sp. S23]
          Length = 362

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 27/176 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE+IA VP      + H++      R   +++    ES+NE  HLL   ++     
Sbjct: 158 RFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGL 217

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK--AQGEKLK- 236
                +    A   +F  +F+ Y++SP++ + F   +E  A  TY + I+   +G   K 
Sbjct: 218 LMKTLILG--AQGVFFNAMFLSYLVSPKITHRFVGYLEEEAVHTYTRCIREIEEGHLPKW 275

Query: 237 ---KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
              +   P +A++Y+              R+P  +R     + D+   IR DEA H
Sbjct: 276 SDERFEIPEMAVRYW--------------RMPEGKR----TMKDLIYYIRADEAVH 313


>gi|385304059|gb|EIF48094.1| alternative oxidase mitochondrial precursor [Dekkera bruxellensis
           AWRI1499]
          Length = 374

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 30/182 (16%)

Query: 115 RDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRAD-YLKVHFAESWNEMHHLLIME 173
           R++   RF VLE+IA +P  +    L   +S    RR   +++    E++NE  HLL   
Sbjct: 165 REKWLTRFIVLESIAGIP-GSVAGFLRHLQSIRLMRRDKAFIETLLDEAYNERMHLLTFM 223

Query: 174 ELG--GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-- 229
           +LG  G       +  Q I    +F+T   Y+I P++ + F   +E  A  TY + ++  
Sbjct: 224 KLGKPGRFARLMLWFGQGIFANLFFLT---YIIRPKICHRFVGYLEEEAVLTYTRCLQDM 280

Query: 230 --AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
                 +L     P +A  Y+               L N      +  YD+ L IR DEA
Sbjct: 281 RMGLNPQLYHTGIPQIAKDYW--------------HLTNK-----DTFYDMILYIRADEA 321

Query: 288 EH 289
           +H
Sbjct: 322 KH 323


>gi|344302079|gb|EGW32384.1| inducible alternative oxidase 2 [Spathaspora passalidarum NRRL
           Y-27907]
          Length = 342

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 28/177 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE+IA VP F    + H++      R   +++    E++NE  HLL   +LG  +
Sbjct: 137 TRVIFLESIAGVPGFVASFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFIKLGKPS 196

Query: 180 WWFDRFLAQHIAVAYYFVTVFM--YVISPRMAYHFSECVESHAFETYDKFIK-----AQG 232
           W+    +     V   F  +F   Y+ +PR  + F   +E  A  TY   +       + 
Sbjct: 197 WFTRSIIYAGQGV---FANIFFLCYLANPRFCHRFVGYLEEEAVSTYTHLVHELETPGKL 253

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                M  P +A++Y+   +L     F+                D+ L IR DEA+H
Sbjct: 254 TGFNDMKIPEIAVQYWP--ELTENSSFK----------------DLILRIRADEAKH 292


>gi|68465140|ref|XP_723269.1| inducible alternative oxidase 2 [Candida albicans SC5314]
 gi|46445296|gb|EAL04565.1| inducible alternative oxidase 2 [Candida albicans SC5314]
          Length = 365

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 30/178 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A VP      + H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 160 TRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPS 219

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF-----IKAQ 231
            WF R   ++ Q +    +F+   +Y+++PR  + F   +E  A  TY        +  +
Sbjct: 220 -WFTRSIIYVGQGVFTNVFFL---LYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGK 275

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               + M  P VA++Y+                     PK  +  D+ L IR DEA+H
Sbjct: 276 LPAFETMKIPEVAVQYWP-----------------ELTPK-SSFKDLILRIRADEAKH 315


>gi|51701359|sp|Q9UV71.1|AOX2_CANAL RecName: Full=Alternative oxidase 2, mitochondrial; Flags:
           Precursor
 gi|6650742|gb|AAF21993.1|AF116872_1 alternative oxidase [Candida albicans]
          Length = 365

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 30/178 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A VP      + H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 160 TRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPS 219

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF-----IKAQ 231
            WF R   ++ Q +    +F+   +Y+++PR  + F   +E  A  TY        +  +
Sbjct: 220 -WFTRSIIYVGQGVFTNVFFL---LYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGK 275

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               + M  P VA++Y+                     PK  +  D+ L IR DEA+H
Sbjct: 276 LPAFETMKIPEVAVQYWP-----------------ELTPK-SSFKDLILRIRADEAKH 315


>gi|238878671|gb|EEQ42309.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 365

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 30/178 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A VP      + H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 160 TRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPS 219

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF-----IKAQ 231
            WF R   ++ Q +    +F+   +Y+++PR  + F   +E  A  TY        +  +
Sbjct: 220 -WFTRSIIYVGQGVFTNVFFL---LYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGK 275

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               + M  P VA++Y+                     PK  +  D+ L IR DEA+H
Sbjct: 276 LPAFETMKIPEVAVQYWP-----------------ELTPK-SSFKDLILRIRADEAKH 315


>gi|94498336|ref|ZP_01304895.1| Alternative oxidase [Sphingomonas sp. SKA58]
 gi|94422216|gb|EAT07258.1| Alternative oxidase [Sphingomonas sp. SKA58]
          Length = 236

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 33/203 (16%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFG 147
               + +  T+ + +  D  +  R   R  VLET+A VP     ++ H      M    G
Sbjct: 26  LRDRIALGFTKVLRLCADTFFAKRYGHRAIVLETVAAVPGMVGATLTHLRCLRRMQGDNG 85

Query: 148 WWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPR 207
           W      ++    E+ NE  HL+   E+   +  F+R +   +  A+Y     +Y++S R
Sbjct: 86  W------IRTLMEEAENERMHLMTFIEVAQPSL-FERLVILLVQWAFYLAFFGLYLVSAR 138

Query: 208 MAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPN 266
            A+      E  A  +Y  ++K   E +   + AP +A +Y+              +LP+
Sbjct: 139 TAHRVVGYFEEEAVISYTLYLKEIDEGRSPDVAAPMIARRYW--------------KLPD 184

Query: 267 SRRPKIENLYDVFLNIRDDEAEH 289
           +       L DV L +R DEA H
Sbjct: 185 T-----ATLRDVVLVVRADEAHH 202


>gi|443722305|gb|ELU11227.1| hypothetical protein CAPTEDRAFT_227551 [Capitella teleta]
          Length = 337

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 32/177 (18%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVH--FAESWNEMHHLLIMEELGGN 178
           R   LET+A VP      V H+ ES    RR D+  +H    E+ NE  HL++  ++   
Sbjct: 163 RLCFLETVAGVPGMVAAMVRHL-ESLRRMRR-DHGWIHTLLEEAENERMHLMVFLQIKQP 220

Query: 179 AWWFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFIK----AQG 232
           +  F   +    A+   FV+ F   Y++SP++ + F   +E  A  TY K ++       
Sbjct: 221 SLLFRLSVMSTQAI---FVSGFSIAYLLSPKLCHRFVGYLEEEAVITYTKLLQQIEDGGM 277

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +  K  PA  +AI Y+                   R  +   + DV L IR DEA H
Sbjct: 278 QDWKTKPASQIAINYW-------------------RLSQEATMKDVVLAIRADEAHH 315


>gi|328875297|gb|EGG23662.1| hypothetical protein DFA_05796 [Dictyostelium fasciculatum]
          Length = 363

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 22/168 (13%)

Query: 124 VLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 183
           +LET+A VP  A   + H++ S    +    +K    E+ NE  HL+   E+    +  +
Sbjct: 181 LLETVAAVPGMAGGMLQHLH-SLRTCQNNYVIKTLLDEAENERMHLMTFIEITKPTFG-E 238

Query: 184 RFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL-KKMPAPA 242
           R L      AY      +Y++SP+ A+ F   +E  A  TY   ++     L + + APA
Sbjct: 239 RVLIALAQAAYLVDYTILYLVSPKTAHRFVGFLEEEAVLTYTNMLRDLDAGLVENVNAPA 298

Query: 243 VAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHC 290
           +A  Y+                     P+   L DV + IR DE EH 
Sbjct: 299 IAKAYWG-------------------LPEDAKLRDVIMVIRQDEVEHA 327


>gi|67906549|gb|AAY82655.1| predicted alternative respiratory pathway oxidase [uncultured
           bacterium MedeBAC49C08]
          Length = 213

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 29/194 (14%)

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRAD-YLKVHF 159
           L+T ++ +  D  +R R   R  VLET+A VP      +LH ++S       D  +K   
Sbjct: 32  LITRALRIAADLFFRKRYGHRAVVLETVAAVPGMV-AGMLHHFKSLRSMTDDDGIIKELL 90

Query: 160 AESWNEMHHLLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECV 216
            E+ NE  HL+   E+      F+R L   AQ +   +YF   F+YV     A+      
Sbjct: 91  DEAENERMHLMTFIEI-SKPTLFERLLVLSAQIVFGTFYF---FLYVFFRGTAHRMIGYF 146

Query: 217 ESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENL 275
           E  A  +Y +F+ +     ++ + AP +A+ Y+  G+                      L
Sbjct: 147 EEEAVTSYTEFLDEIDKGTIENVAAPKIAVDYWNLGNK-------------------ATL 187

Query: 276 YDVFLNIRDDEAEH 289
            DV + +R+DEA H
Sbjct: 188 RDVVVAVRNDEAGH 201


>gi|336451471|ref|ZP_08621909.1| Alternative oxidase [Idiomarina sp. A28L]
 gi|336281842|gb|EGN75114.1| Alternative oxidase [Idiomarina sp. A28L]
          Length = 210

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  +  R   R  VLET+A VP     ++ H++          ++     E+ NE  HLL
Sbjct: 34  DLFFSGRYGNRAVVLETVAAVPGMVGGAIQHLHSLRRMKNDDGWIHTLLEEAENERMHLL 93

Query: 171 IMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
              E+     W +R L   AQ I    +FV   +Y+ S + A+     +E  A  +Y ++
Sbjct: 94  TFIEV-AKPNWLERTLVIIAQGIFYNAFFV---LYLFSSKTAHRVVGYLEEEAVYSYTEY 149

Query: 228 IKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           +      K + +PAP +AI Y+              +LP   R     L +V + +R DE
Sbjct: 150 LAGVDSGKYENVPAPQIAIDYW--------------QLPEDAR-----LREVIIAVRADE 190

Query: 287 AEH 289
           A+H
Sbjct: 191 AKH 193


>gi|300120685|emb|CBK20239.2| Alternative oxydase (AOX) [Blastocystis hominis]
          Length = 302

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 22/177 (12%)

Query: 114 YRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME 173
           +RD    R   LE++A VP     S LH        +  +++K    E+ NE  HLL + 
Sbjct: 99  FRDNYIRRAIFLESVASVPGLV-CSSLHHLRCLRRLQPNEWIKPLVDEAENERMHLLAVR 157

Query: 174 ELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQG 232
               N     +   + + V++  +  FM+V +PR ++     +E HA ++Y + IK    
Sbjct: 158 TYT-NLTIVQKLFIRILQVSFVSLFSFMFVFTPRTSHRLVGFLEEHAVDSYTEMIKRIDT 216

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            KLK   A  +   Y+                     P+   L D  L IR DEA+H
Sbjct: 217 GKLKNERATQITKDYWG-------------------LPEDATLRDALLVIRADEADH 254


>gi|388582970|gb|EIM23273.1| alternative oxidase, partial [Wallemia sebi CBS 633.66]
          Length = 401

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 32/177 (18%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP F    + H+       R   Y+ +  AE+ NE  HL+    +   + 
Sbjct: 183 RFIFLESVAGVPGFVASMLRHLRSLRRMDRDGGYINMLLAEAENERMHLMSFLAVEKPSI 242

Query: 181 WFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK------AQG 232
           W    +  AQ +    +FV+   Y+I+P++ + F+  +E  A  TY + +K        G
Sbjct: 243 WMRAMVLGAQGVFFNLFFVS---YLINPKICHRFTAVLEEEAVVTYTRAMKEIKAGYVPG 299

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            K K++  P++A  Y+                   + P    + D+ + +R DE+ H
Sbjct: 300 WKHKEI--PSIARGYW-------------------QLPADSTMLDLVMVVRADESNH 335


>gi|254455703|ref|ZP_05069132.1| alternative oxidase 2 [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082705|gb|EDZ60131.1| alternative oxidase 2 [Candidatus Pelagibacter sp. HTCC7211]
          Length = 222

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 37/201 (18%)

Query: 98  VNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRR 151
           + +  T+ +  + D  ++ +   R  VLET+A VP      + H      M +  GW   
Sbjct: 17  IALAFTKFLRYIADTFFKKKYGHRAVVLETVAAVPGMVAGMLTHLRSLRKMEDDRGW--- 73

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVF--MYVISPRMA 209
              +K+   E+ NE  HL+   ++       +RF+   I   + F+ ++  +Y++S R A
Sbjct: 74  ---IKILLEEAENERMHLMTFIQV-AKPTSLERFII--IIAQFLFIIMYSIIYLVSQRTA 127

Query: 210 YHFSECVESHAFETYDKFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSR 268
           +      E  A  +Y +++K  +  ++   PAP +AI Y+                    
Sbjct: 128 HRIVGYFEEEAVFSYTEYLKELESGRIDDQPAPKIAIDYWN------------------- 168

Query: 269 RPKIENLYDVFLNIRDDEAEH 289
            P    L DV   +RDDEA H
Sbjct: 169 LPLHSTLKDVVRVVRDDEAGH 189


>gi|241949569|ref|XP_002417507.1| alternative oxidase 2, mitochondrial precursor, putative [Candida
           dubliniensis CD36]
 gi|223640845|emb|CAX45160.1| alternative oxidase 2, mitochondrial precursor, putative [Candida
           dubliniensis CD36]
          Length = 366

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 28/177 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A VP      + H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 161 TRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPS 220

Query: 180 WWFDR--FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF-----IKAQG 232
           W      ++ Q +    +F+   +Y+++PR  + F   +E  A  TY        I  + 
Sbjct: 221 WLTRSIIYIGQGVFTNVFFL---LYLLNPRYCHRFVGYLEEEAVRTYSHLLDEMAIPGKL 277

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
              + M  P VAI+Y+   +L     F+                D+ L IR DEA+H
Sbjct: 278 PSFETMKIPEVAIQYWP--ELTSKSSFK----------------DLILRIRADEAKH 316


>gi|310793332|gb|EFQ28793.1| alternative oxidase [Glomerella graminicola M1.001]
          Length = 355

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 30/215 (13%)

Query: 95  EQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADY 154
           EQ V+     + ++    L   +   RF  LE+IA VP      + H+       R   +
Sbjct: 130 EQQVDKKNPTTSLIADKPLTESQWLVRFIFLESIAGVPGMVAGMLRHLGSLRRMRRDNGW 189

Query: 155 LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFS 213
           ++    ES+NE  HLL   ++    W+    +    A   +F  +F+ Y+++P++ + F 
Sbjct: 190 IETLLEESFNERMHLLTFMKMSEPGWFMKVMILG--AQGVFFNGMFLSYLVAPKVTHRFV 247

Query: 214 ECVESHAFETYDKFIKAQGEKL------KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
             +E  A  TY + +    + L           P +A++Y+              ++P  
Sbjct: 248 GYLEEEAVHTYTRCLYEIDQGLLPKWSDPNFVIPDIAVQYW--------------KIPEG 293

Query: 268 RRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNL 302
            R     + D+ L IR DEA H        T GNL
Sbjct: 294 HR----TMKDLILYIRADEAVH---RGVNHTLGNL 321


>gi|322711578|gb|EFZ03151.1| Alternative oxidase [Metarhizium anisopliae ARSEF 23]
          Length = 363

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 23/190 (12%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE+IA VP      + H+       R   +++    ES+NE  HLL   ++    W
Sbjct: 155 RFVFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 214

Query: 181 WFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK--AQGEKLK 236
           +    +  AQ +     F+T   Y++ PR+ + F   +E  A  TY + I+    G   K
Sbjct: 215 FMKLMIIGAQGVFFNALFIT---YLLHPRIVHRFVGYLEEEAVHTYTRAIREIEDGHLPK 271

Query: 237 ----KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292
               K   P +A++    G L+     Q   +P   R     + D+ L IR DEA H   
Sbjct: 272 WADAKFQIPDIAVQ----GALF-SHIVQYWNMPEGNR----TMKDLILYIRADEAGH--- 319

Query: 293 MKACQTHGNL 302
                T GNL
Sbjct: 320 RGVNHTLGNL 329


>gi|336269921|ref|XP_003349720.1| alternative oxidase [Sordaria macrospora k-hell]
          Length = 337

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 27/176 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE+IA VP      + H++      R   +++    ES+NE  HLL   ++     
Sbjct: 133 RFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGL 192

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIKAQGE------ 233
                +    A   +F  +F+ Y+ISP++ + F   +E  A  TY + I    E      
Sbjct: 193 LMKTLILG--AQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCINEIEEGHLPKW 250

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           + ++   P +A++Y+              R+P  +R     + D+   +R DEA H
Sbjct: 251 RDERFQIPEMAVRYW--------------RMPEGKR----TMKDLIYYVRADEAVH 288


>gi|255943405|ref|XP_002562471.1| Pc18g06440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587204|emb|CAP94868.1| Pc18g06440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 331

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 27/175 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           RF  LE++A VP      + H+       R   +++    E++NE  HLL   +L   G 
Sbjct: 130 RFVFLESVAGVPGMVAGMLRHLKSIRRMRRDNGWIETLLEEAYNERMHLLTFLKLAEPGP 189

Query: 179 AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEK 234
           A  F    AQ +   ++      Y+ISP++ + F   +E  A  TY K I+         
Sbjct: 190 AMRFMVLGAQWV---FFSGFSLAYLISPQICHRFVGYLEEEAVITYSKAIRDLEDGHLPA 246

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            + + AP +AIKY+              ++P  +R     +  + L +R DEA+H
Sbjct: 247 WEGLQAPEMAIKYW--------------QMPEGQR----CMRSLLLYVRADEAKH 283


>gi|443697354|gb|ELT97860.1| hypothetical protein CAPTEDRAFT_122794 [Capitella teleta]
          Length = 305

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 32/177 (18%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVH--FAESWNEMHHLLIMEELGGN 178
           R   LET+A VP      V H+ ES    RR D+  +H    E+ NE  HL++  ++   
Sbjct: 131 RLCFLETVAGVPGMVAAMVRHL-ESLRKMRR-DHGWIHTLLEEAENERMHLMVFLQIKQP 188

Query: 179 AWWFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFIK----AQG 232
           +  F   +    A+   FV+ F   Y++SP++ + F   +E  A  TY K ++       
Sbjct: 189 SLLFRLSVMSTQAI---FVSGFSIAYLLSPKLCHRFVGYLEEEAVITYTKLLQQIEDGGM 245

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           ++ K  PA  +AI Y+                   R  +   + DV L IR DEA H
Sbjct: 246 QEWKTKPASQIAINYW-------------------RLSQEATMKDVVLAIRADEAHH 283


>gi|8676907|gb|AAF70262.2| alternative oxidase [Podospora anserina]
          Length = 146

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 29/147 (19%)

Query: 150 RRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISP 206
           R   +++    E++NE  HLL   +L    W F R +   AQ +    +F++   Y+ISP
Sbjct: 21  RDNGWIETLLEEAFNERMHLLTFLKLAEPGW-FMRVMVIGAQGVFFNGFFLS---YLISP 76

Query: 207 RMAYHFSECVESHAFETYDKFIK----AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTA 262
           R+ + F   +E  A  TY + I+        + K + AP +A+KY+              
Sbjct: 77  RICHRFVGYLEEEAVITYTRAIEELEAGNLPEWKDLDAPEIAVKYW-------------- 122

Query: 263 RLPNSRRPKIENLYDVFLNIRDDEAEH 289
           ++P  +R     + D+ L IR DEA+H
Sbjct: 123 QMPEGQR----KMKDLLLFIRADEAKH 145


>gi|328875293|gb|EGG23658.1| alternative oxidase [Dictyostelium fasciculatum]
          Length = 392

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 22/168 (13%)

Query: 124 VLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 183
           +LET+A VP  A   + H++ S    +    +K    E+ NE  HL+   E+       +
Sbjct: 209 LLETVAAVPGMAGGMLQHLH-SLRTCKNIYVIKTLLDEAENERMHLMTFIEITKPTVG-E 266

Query: 184 RFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL-KKMPAPA 242
           R L      AY    + +Y++SP+ A+ F   +E  A  TY   ++     L + + APA
Sbjct: 267 RALIALAQAAYLVDYMILYLVSPKTAHRFVGFLEEEAVLTYTNMLRDLDAGLVENVNAPA 326

Query: 243 VAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHC 290
           +A  Y+                     P+   L DV + IR DE EH 
Sbjct: 327 IAKAYWG-------------------LPEDAKLRDVIMVIRQDEVEHA 355


>gi|302847293|ref|XP_002955181.1| alternative oxidase [Volvox carteri f. nagariensis]
 gi|300259473|gb|EFJ43700.1| alternative oxidase [Volvox carteri f. nagariensis]
          Length = 219

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 82/209 (39%), Gaps = 38/209 (18%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP      + H+       R   ++     E+ NE  HL+   EL     
Sbjct: 43  RIIFLETVAGVPGMVAGMLRHLKSLRTMRRDHGWIHTLLEEAENERMHLITFLELRRPGP 102

Query: 181 WFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA--QGEKLK 236
            F   +  AQ +    YF+    Y++SPR  + F   +E  A +TY   +     G   K
Sbjct: 103 LFRAAVIGAQGVFFNAYFLA---YLLSPRTCHAFIGFLEEEAVKTYTHALAEIDAGRLWK 159

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKAC 296
             PAPA+A++Y+                     P+   + D+ L +R DE        AC
Sbjct: 160 GTPAPAIAVEYWG-------------------LPRGATMRDLVLAVRADE--------AC 192

Query: 297 QTHGNLRSPHSYSEDDFGCEDESGCIVAQ 325
             H N    H++S+   G  +     V+Q
Sbjct: 193 HAHVN----HTFSKLTPGQTNPFAVGVSQ 217


>gi|429965955|gb|ELA47952.1| hypothetical protein VCUG_00535 [Vavraia culicis 'floridensis']
          Length = 318

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 24/180 (13%)

Query: 113 LYRDRDYAR-FFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL- 170
           LY  +DY R   VLET+A +P        H+Y         + +K    E+ NE  HLL 
Sbjct: 140 LYFQKDYLRRVVVLETVAAIPGMVGGMFRHLYSLRNLEDNGEAIKKLVLEAENERQHLLT 199

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF-IK 229
            +  L  N    DR L +     ++   +  Y ++P+ A+ F   +E  A  +YD F  +
Sbjct: 200 FLAVLKPN--ILDRMLIRLGQFLFFNGYMVFYFMTPKTAHRFVGYLEEEAVRSYDAFEEE 257

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                +K + AP ++  Y+                     P+   L DV   +R DEAEH
Sbjct: 258 ILVGHIKNVDAPRISKDYWN-------------------LPEEATLVDVVRAVRADEAEH 298


>gi|399545055|ref|YP_006558363.1| alternative oxidase [Marinobacter sp. BSs20148]
 gi|399160387|gb|AFP30950.1| Alternative oxidase [Marinobacter sp. BSs20148]
          Length = 215

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 23/198 (11%)

Query: 94  FEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRAD 153
           F   V   LT  +    D  +  R   R  VLET+A VP      V HM          +
Sbjct: 26  FSDRVAFRLTRLLRFFADLFFAKRYGHRAVVLETVAAVPGMVGGMVGHMRSLRRMEDNRE 85

Query: 154 YLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVT-VFMYVISPRMAYHF 212
           ++     E+ NE  HL+   ++   + + +R L   +A   +F + +F+Y++S R A+  
Sbjct: 86  WIHTLLEEAENERMHLMTFVQIAQPS-FLERVLIL-LAQGIFFTSFLFLYIVSGRTAHRL 143

Query: 213 SECVESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPK 271
               E  A  +Y +++ +    +L+ + AP +AI Y+                   + P 
Sbjct: 144 VGYFEEEAVYSYGEYLAEVDSGRLENVAAPQIAIDYW-------------------KLPA 184

Query: 272 IENLYDVFLNIRDDEAEH 289
              L DV + +R DEA H
Sbjct: 185 DATLRDVIIVVRLDEAGH 202


>gi|68464763|ref|XP_723459.1| hypothetical protein CaO19.4773 [Candida albicans SC5314]
 gi|46445493|gb|EAL04761.1| hypothetical protein CaO19.4773 [Candida albicans SC5314]
          Length = 241

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 30/178 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A VP      + H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 36  TRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPS 95

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF-----IKAQ 231
            WF R   ++ Q +    +F+   +Y+++PR  + F   +E  A  TY        +  +
Sbjct: 96  -WFTRSIIYVGQGVFTNVFFL---LYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGK 151

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               + M  P VA++Y+                     PK  +  D+ L IR DEA+H
Sbjct: 152 LPAFETMKIPEVAVQYWP-----------------ELTPK-SSFKDLILRIRADEAKH 191


>gi|354548354|emb|CCE45090.1| hypothetical protein CPAR2_700940 [Candida parapsilosis]
          Length = 370

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 34/180 (18%)

Query: 120 ARFFVLETIARVP--YFAFISVLHMYESFGWWRRAD-YLKVHFAESWNEMHHLLIMEELG 176
            R   LE++A VP    +F+  LH   S    RR   +++    E++NE  HLL   ++G
Sbjct: 165 TRVIFLESVAGVPGSVASFLRTLH---SLRLLRRDKAWIETLQDEAYNERMHLLTFMKIG 221

Query: 177 GNAWWFDR--FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE- 233
             +W+     +L Q +    +F   F Y+ +P+  + F   +E  A  TY   +    + 
Sbjct: 222 QPSWFTKTIIYLGQGVFTNLFF---FCYLANPKYCHRFVGYLEEEAVRTYTHLLDEMEDP 278

Query: 234 ----KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                 +K+  P +A+ Y+                  S   K  +  D+ L IR DE++H
Sbjct: 279 NKLNGFQKIQIPTIAVNYW------------------SSLSKDSSFKDLILRIRADESKH 320


>gi|62241309|dbj|BAD93712.1| alternative oxidase 1a [Candida maltosa]
          Length = 371

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 30/178 (16%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE +A +P      + H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 166 TRCIFLEAVAGIPGSVAGLIRHLHSLRMLTRDKAWIQTLNDEAYNERMHLLTFIKIGKPS 225

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF-----IKAQ 231
            WF R   ++ Q +    +F+   +Y+++P+  + F   +E  A  TY        +  +
Sbjct: 226 -WFTRTIIYVGQGVFTNLFFM---VYLMNPKYCHRFVGYLEEEAVRTYTHLLAELNVPGK 281

Query: 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               +KM  P +A++Y+        DE      P S      +  D+ L IR DE++H
Sbjct: 282 LPDFEKMVIPTIAVQYW--------DELS----PES------SFKDLILRIRADESKH 321


>gi|443894326|dbj|GAC71674.1| hypothetical protein PANT_5c00016 [Pseudozyma antarctica T-34]
          Length = 468

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 64/182 (35%), Gaps = 42/182 (23%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LETIA VP     +  H+       R   ++     ++ NE  HLL   EL     
Sbjct: 254 RIIFLETIAGVPGMVAATCRHLQSLRLMKRDKGWIHTMLEDAENERMHLLTFMEL-AKPG 312

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPA 240
           W  R  A      +Y      Y++SPR+A+ F   +E  A  TY                
Sbjct: 313 WIARTFALLAQGVFYNFFFVFYLVSPRVAHRFVGVLEEEAVMTYS--------------- 357

Query: 241 PAVAIKYYTGGDLYLFDEFQTARLP---NSRRPKIENLY----------DVFLNIRDDEA 287
                        ++ D+    RLP   N R P+I   Y          DV   +R DEA
Sbjct: 358 -------------FILDDLNEGRLPEWENVRAPEIARQYWQLSDDAMLVDVIRAVRADEA 404

Query: 288 EH 289
            H
Sbjct: 405 TH 406


>gi|397914078|gb|AFO70090.1| alternative oxidase, partial [Fusarium solani]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 3/111 (2%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            RF  LE+IA VP      + H+       R   +++    ES+NE  HLL   ++    
Sbjct: 90  VRFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPG 149

Query: 180 WWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK 229
           W+    +    A   +F ++F+ Y+ISP++ + F   +E  A  TY + IK
Sbjct: 150 WFMKMMIIG--AQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIK 198


>gi|348682022|gb|EGZ21838.1| hypothetical protein PHYSODRAFT_488439 [Phytophthora sojae]
          Length = 305

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 79/211 (37%), Gaps = 34/211 (16%)

Query: 93  KFEQSVNILLTESVIMVLDAL--YRDRDYA--------RFFVLETIARVPYFAFISVLHM 142
           K  + V +L  +++ +  D L  YR    A        R  +LET+A VP        H+
Sbjct: 92  KIHEYVALLGVKTLRLGFDLLSGYRGPGAAMTVQDWLNRCLLLETVAGVPGMVVGMAHHL 151

Query: 143 YESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMY 202
                  R + ++     E+ NE  HLLI   +    W F R +       ++      Y
Sbjct: 152 RSLRSLKRDSGWIHTLLEEAENERMHLLIFMNMKQPGWGF-RMMVLAAQGVFFPAFYLAY 210

Query: 203 VISPRMAYHFSECVESHAFETYDKFIK----AQGEKLKKMPAPAVAIKYYTGGDLYLFDE 258
           ++SP+  + F   +E  A +TY   ++       ++     AP +   YY          
Sbjct: 211 LVSPKTCHRFVGFLEEEAVKTYTNLLEDMEHGHLDEWCTTTAPLIGRSYYN--------- 261

Query: 259 FQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                      P+   +YD+   IR DEA H
Sbjct: 262 ----------LPEDAKVYDMIKCIRADEANH 282


>gi|358378712|gb|EHK16393.1| hypothetical protein TRIVIDRAFT_216965 [Trichoderma virens Gv29-8]
          Length = 359

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 30/215 (13%)

Query: 95  EQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADY 154
           EQ V+     + I     L   +   RF  LE+IA VP      + H+    G  R   +
Sbjct: 134 EQQVDKKHPTTAIKAEKPLTEAQWLIRFVFLESIAGVPGMVGGMLRHLSSLRGMKRDNGW 193

Query: 155 LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFS 213
           ++    ES+NE  HLL    +     +    +    A   +F ++F+ Y++ P++ + F 
Sbjct: 194 IETLLEESYNERMHLLTFMTMCEPGLFMKLMIIG--AQGVFFNSLFVAYLLHPKIVHRFV 251

Query: 214 ECVESHAFETYDKFIK--AQGEKLK----KMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
             +E  A  TY + I    +G   K    K   P +A++Y+               +P  
Sbjct: 252 GYLEEEAVHTYTRAIAEIEEGHLPKWADPKFRIPDIAVQYWN--------------MPEG 297

Query: 268 RRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNL 302
            R     + D+ L IR DEA H        T GNL
Sbjct: 298 NR----TMKDLILYIRADEASH---RGVNHTLGNL 325


>gi|294872126|ref|XP_002766164.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
 gi|239866823|gb|EEQ98881.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
          Length = 327

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 1/109 (0%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R  VLETIA +P        H+       R   ++     E+ +E  HLLI + L  + W
Sbjct: 131 RLIVLETIAGIPGMVAAMNRHLRSLRRMERDNGWIPTLIEEAEDERMHLLISQGLVSHGW 190

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
           +   FL      A++      Y +SPR  + F   +E  AF+TY   ++
Sbjct: 191 FLRSFLTAAQG-AFFLFYAGAYSVSPRFCHRFVGYLEEEAFKTYTAIVE 238


>gi|397914082|gb|AFO70092.1| alternative oxidase, partial [Fusarium solani]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 3/111 (2%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            RF  LE+IA VP      + H+       R   +++    ES+NE  HLL   ++    
Sbjct: 90  VRFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPG 149

Query: 180 WWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK 229
           W+    +    A   +F ++F+ Y+ISP++ + F   +E  A  TY + IK
Sbjct: 150 WFMKMMIIG--AQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIK 198


>gi|397914080|gb|AFO70091.1| alternative oxidase, partial [Fusarium solani]
          Length = 236

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 3/111 (2%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            RF  LE+IA VP      + H+       R   +++    ES+NE  HLL   ++    
Sbjct: 89  VRFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPG 148

Query: 180 WWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK 229
           W+    +    A   +F ++F+ Y+ISP++ + F   +E  A  TY + IK
Sbjct: 149 WFMKTMIIG--AQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIK 197


>gi|393212505|gb|EJC98005.1| alternative oxidase [Fomitiporia mediterranea MF3/22]
          Length = 379

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LETIA +P  A  ++ H++      R A ++     E+ NE  HL+    +     
Sbjct: 168 RCLFLETIAGIPGMAAATIRHLHSLRLLRRDAGWIHTLLEEAENERMHLMSFLAIR-KPG 226

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI----KAQGEKLK 236
            F R L       +Y V  F Y+++PR+ + F   +E  A +TY   I      +  + +
Sbjct: 227 IFMRGLILGAQGVFYNVFFFSYLMAPRVCHRFVGYLEEEAVKTYTALIADLENGRFPEWE 286

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             PAP +A  Y+              RL ++       L D+   IR DE  H
Sbjct: 287 NKPAPPIAKDYW--------------RLRDN-----ATLLDMIYAIRSDEVTH 320


>gi|378548284|sp|F4P6T0.1|AOX_BATDJ RecName: Full=Ubiquinol oxidase, mitochondrial; AltName:
           Full=Alternative oxidase; Flags: Precursor
 gi|328768827|gb|EGF78872.1| hypothetical protein BATDEDRAFT_32033 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 316

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  +R +   R  VLET+A VP      + H+           ++    +E+ NE  HLL
Sbjct: 116 DLFFRKQYVHRAVVLETVAAVPGMVAGMLRHLTSLRLMRHDGGWISHLLSEAENERLHLL 175

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI-K 229
              ++   +  F+R L   +   ++ V    Y++ P+ A+     +E  A  +Y  F+ +
Sbjct: 176 TWMKVCQPS-LFERMLVALVQTLFFNVYFLAYMLFPKTAHRMVGYLEEEAIISYTHFLAE 234

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                +   PAP +AI Y+         E  T R             DV L +R DEA H
Sbjct: 235 IDAGNIPNGPAPKLAIDYWN------LKEDATVR-------------DVVLAVRADEANH 275


>gi|358060729|dbj|GAA93500.1| hypothetical protein E5Q_00141 [Mixia osmundae IAM 14324]
          Length = 401

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 63/174 (36%), Gaps = 27/174 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LETIA VP  A   + H+       R   ++     ES NE  HL    E+     
Sbjct: 188 RFIFLETIAGVPGSAAAILRHLKSLRTMERDGGWIHTLLQESENERIHLFSFLEITKPG- 246

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMP- 239
            F R +       +       YVISPR+ + F   +E  A  TY   I     K  ++P 
Sbjct: 247 RFMRLMTMAAQGVFTSAFALAYVISPRICHRFVGKLEEQAVLTYTLAIDEI--KAGRLPE 304

Query: 240 ----APAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               AP +AI Y+                   R        D+   IR DEA H
Sbjct: 305 FDRKAPEIAINYW-------------------RMQPAATFLDMLYQIRADEATH 339


>gi|390364451|ref|XP_785497.3| PREDICTED: alternative oxidase, mitochondrial-like
           [Strongylocentrotus purpuratus]
          Length = 289

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 28/175 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP        H+       R   ++     E+ NE  HL+   E+   + 
Sbjct: 115 RIIFLETVAGVPGMVAAMSRHLRSLRRMQRDHGWIHTLLEEAENERMHLMTALEIKQPSL 174

Query: 181 WFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE----K 234
           +F   +  AQ I V  +F++   Y++SPR  + F   +E  A  TY K +K        K
Sbjct: 175 FFRLMVLGAQGIFVNMFFIS---YLVSPRFCHRFVGYLEEEAVITYTKLLKDLRADALPK 231

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            K   AP ++I Y+                    RP  + + D+F  IR DEA H
Sbjct: 232 WKDRIAPEISINYW------------------KLRPDADYI-DLFRAIRADEAHH 267


>gi|443727462|gb|ELU14203.1| hypothetical protein CAPTEDRAFT_151460 [Capitella teleta]
          Length = 233

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 68/179 (37%), Gaps = 28/179 (15%)

Query: 117 RDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG 176
           R   R   LET+A VP      V H+       R   ++     E+ NE  HL+    L 
Sbjct: 55  RWLTRLCFLETVAAVPGMVAAMVRHLNSIRKMSRDHGWIHTLLEEAENERMHLMTFLLLK 114

Query: 177 GNAWWFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECVESHAFETYDKFIK----A 230
             +W F   +   +     FVT F   Y++SP++ + F   +E  A  TY K +K     
Sbjct: 115 QPSWAFRMVV---VITQGVFVTGFSCAYMLSPKLCHRFVGYLEEEAVVTYTKLLKEIETG 171

Query: 231 QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +     PA  VAI Y+   +                      + DV L IR DEA H
Sbjct: 172 NMQHWLTQPASQVAIHYWNLAE-------------------DAKMRDVILAIRADEAHH 211


>gi|301106725|ref|XP_002902445.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|262098319|gb|EEY56371.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 316

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 28/175 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE++A VP      + H+     + R   ++     E+ NE  HLLI   +    +
Sbjct: 122 RCLFLESVAGVPGMVGGMLRHLRSLRKFKRDYGWIHTLLEEAENERMHLLIFMNIKQPGY 181

Query: 181 WFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEK 234
           +F   +  AQ +    +F+T   Y++SP+  + F   +E  A +TY   +K       + 
Sbjct: 182 FFRTLVLGAQGVFFNAFFLT---YLVSPKTCHRFVGYLEEEAVKTYTCLLKDIEDGHLDA 238

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            K+  AP +A  YY                   + P+  +LYD+   +R DE  H
Sbjct: 239 WKEKKAPLIAQTYY-------------------KLPEDASLYDMVKCVRADECNH 274


>gi|433335539|gb|AGB34163.1| mitochondrial alternative oxidase 1b, partial [Olea europaea subsp.
           europaea]
          Length = 143

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 32/154 (20%)

Query: 140 LHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDR---FLAQHIAVAYYF 196
           L  +E  G W     +K    E+ NE  HL+   E+   + W +R   F  Q +    YF
Sbjct: 17  LRRFEHSGGW-----IKTLLDEAENERMHLMTFMEV-TQSRWNERALVFTVQGVCFNAYF 70

Query: 197 VTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYL 255
           +    Y+ SP++A+     +E  A  +Y +F+K   +  ++ +PAPA+AI Y+       
Sbjct: 71  LA---YLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDYWC------ 121

Query: 256 FDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                         P    L DV + +R DEA H
Sbjct: 122 -------------LPADSTLRDVVMVVRADEAHH 142


>gi|389730180|ref|ZP_10189355.1| alternative oxidase [Rhodanobacter sp. 115]
 gi|388440952|gb|EIL97272.1| alternative oxidase [Rhodanobacter sp. 115]
          Length = 232

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 33/188 (17%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYLKVHFAES 162
           + D  +  R   R  VLET+A VP     ++ H      M +  GW      +     E+
Sbjct: 46  IADTFFAKRYGHRAVVLETVAAVPGMVGATLQHLRCLRRMRDDDGW------IYTLLDEA 99

Query: 163 WNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
            NE  HL+    +     WF+R +   +   +Y     +Y+ SPR A+      E  A  
Sbjct: 100 ENERMHLMTFMAII-RPTWFERVVVVIVQGIFYNAFFLLYLCSPRTAHRVVGYFEEEAVI 158

Query: 223 TYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLN 281
           +Y+ ++ +      + +PAP VAI Y++              LP   R     L DV + 
Sbjct: 159 SYNHYLAQIDSGADENVPAPHVAIDYWS--------------LPADAR-----LRDVIVI 199

Query: 282 IRDDEAEH 289
           IR +EA H
Sbjct: 200 IRAEEAMH 207


>gi|409040019|gb|EKM49507.1| hypothetical protein PHACADRAFT_131107 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 379

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LETIA VP      + H+       R A ++     E+ NE  HL+    +   + 
Sbjct: 173 RILFLETIAGVPGMVAAVLRHLRSLRLMRRDAGWIHTLLEEAENERMHLMTFMTIRKPSI 232

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI----KAQGEKLK 236
           +F R L       +Y      Y+ISPR+ + F   +E  A  TY + I      +  + +
Sbjct: 233 FF-RALVLGAQGVFYNAFFLSYLISPRICHRFVAYLEEEAVHTYTRCIADLENGRIPEWE 291

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             PAP +A  Y+              RL    RP  + + DV   +R DE+ H
Sbjct: 292 NFPAPEIAKDYW--------------RL----RPDAK-MVDVLYAVRSDESTH 325


>gi|257481054|gb|ACV60636.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 31/168 (18%)

Query: 128 IARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
           +A VP      +LH      +E  G W     +K    E+ NE  HL+   E+     W+
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKTLLDEAENERMHLMTFMEVS-QPRWY 54

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAP 241
           +R L   +   ++      Y+ SP++A+     +E  A  +Y +F+K   +  ++ +PA 
Sbjct: 55  ERALVFTVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAS 114

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A+AI Y+                   R P    L DV +  R DEA H
Sbjct: 115 AIAIDYW-------------------RLPADSTLRDVVMVARADEAHH 143


>gi|260948572|ref|XP_002618583.1| hypothetical protein CLUG_02042 [Clavispora lusitaniae ATCC 42720]
 gi|238848455|gb|EEQ37919.1| hypothetical protein CLUG_02042 [Clavispora lusitaniae ATCC 42720]
          Length = 332

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A VP      + H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 128 TRVIFLESVAGVPGMTAAFLRHLHSLRLMKRDKAWIETLLDEAYNERMHLLTFMKIGRPS 187

Query: 180 WWFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKLK 236
           W+   F+   Q +    +F+   MY++SPR  + F   +E  A  TY   I+  + ++L 
Sbjct: 188 WFTKVFVFAGQGVFCNLFFL---MYLLSPRACHRFVGYLEEEAVSTYTHLIEELEAKRLP 244

Query: 237 K---MPAPAVAIKYY 248
           K   +  P VA  Y+
Sbjct: 245 KFDGITVPEVAQLYW 259


>gi|224012000|ref|XP_002294653.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
 gi|220969673|gb|EED88013.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
          Length = 264

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 72/184 (39%), Gaps = 32/184 (17%)

Query: 116 DRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL 175
           D+   R   LET+A +P      + H        R    L +   E+ NE  HLL    +
Sbjct: 56  DKVLNRAIFLETVAAIPGMVAAIIRHFRSLRNMARDGGMLNMFLEEANNERMHLLTFIRM 115

Query: 176 GGNAWWFDRFLAQHIAVAYYFVTVFM--YVISPRMAYHFSECVESHAFETYDKFIKA--- 230
               + F   +   +   + F + F+  Y+ISP   + F   +E  A  TY K IKA   
Sbjct: 116 KDPGYLFRGAV---VGSQFAFGSAFLVLYMISPAFCHRFVGYIEEEACATYTKIIKAIEE 172

Query: 231 --QGEKLKKM---PAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDD 285
             +G  L K     AP +A  Y+     +L +E                + DV   +R D
Sbjct: 173 APEGSDLAKWRTEEAPKIAKGYW-----HLGEE--------------GTVLDVMRAVRAD 213

Query: 286 EAEH 289
           EAEH
Sbjct: 214 EAEH 217


>gi|448091410|ref|XP_004197324.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
 gi|448095975|ref|XP_004198355.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
 gi|359378746|emb|CCE85005.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
 gi|359379777|emb|CCE83974.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
          Length = 341

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 27/176 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A VP      + H++      R   +++    E++NE  HLL   +LG  +
Sbjct: 137 TRVIFLESVAGVPGMVAAFIRHLHSLRLLRRDKAWIETLLDEAYNERMHLLTFMKLGKPS 196

Query: 180 WWFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY----DKFIKAQGE 233
           W+    +   Q +    +F   F Y+++PR  + F   +E  A  TY    D+    +  
Sbjct: 197 WFTKLIIYAGQGVFCNMFF---FSYLLNPRYCHRFVGYLEEEAVSTYTHLLDELEAGKLP 253

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           K   +  P ++  Y+  GDL            N +     + YD+   +R DEA+H
Sbjct: 254 KFDHIELPEISWHYW--GDL------------NEK----SSFYDLVSLVRADEAKH 291


>gi|254453559|ref|ZP_05066996.1| alternative oxidase [Octadecabacter arcticus 238]
 gi|198267965|gb|EDY92235.1| alternative oxidase [Octadecabacter arcticus 238]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 33/189 (17%)

Query: 111 DALYRDRDYARFFVLETIARVPYFA------FISVLHMYESFGWWRRADYLKVHFAESWN 164
           D  + +R   R  VLET+A VP           ++ H+ +  GW      +K    E+ N
Sbjct: 63  DRFFANRYGHRAVVLETVAAVPGMVGGLLQHLRAIRHIRDDQGW------IKELIEEADN 116

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E  HL+   ++   +  F+R L       +Y +  F+Y+++P+ A+     +E  A  +Y
Sbjct: 117 ERMHLMTFIQIAQPSR-FERTLIMVAQAVFYNLYFFLYLLAPKTAHRVVGYLEEEAVISY 175

Query: 225 DKFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
             +++     +++ + AP +AI Y+              +LP+  R     L DV + +R
Sbjct: 176 SHYLEEIDAGRVENVAAPQIAINYW--------------KLPSDAR-----LRDVVVVVR 216

Query: 284 DDEAEHCKT 292
            DEA H  T
Sbjct: 217 ADEAHHRDT 225


>gi|150864598|ref|XP_001383483.2| Alternative oxidase, mitochondrial precursor (SHAM-sensitive
           terminal oxidase) (STO1) [Scheffersomyces stipitis CBS
           6054]
 gi|158518684|sp|Q9P414.2|AOX_PICST RecName: Full=Alternative oxidase, mitochondrial; AltName:
           Full=SHAM-sensitive terminal oxidase; Flags: Precursor
 gi|149288858|gb|AAF97475.2| SHAM-sensitive terminal oxidase [Scheffersomyces stipitis]
 gi|149385854|gb|ABN65454.2| Alternative oxidase, mitochondrial precursor (SHAM-sensitive
           terminal oxidase) (STO1) [Scheffersomyces stipitis CBS
           6054]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 35/180 (19%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE+IA VP      + H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 153 TRCIFLESIAGVPGAVASFIRHLHSLRLLKRDKAWIETLLDEAFNERMHLLTFIKIGKPS 212

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI-KAQGEKL 235
            WF R   ++ Q +    +F+    Y+ +P+  + F   +E  A  TY  F+ + Q  KL
Sbjct: 213 -WFTRTIIYVGQGVFCNLFFL---FYLANPKYCHRFVGYLEEEAVSTYTHFVHELQSGKL 268

Query: 236 KK---MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI---ENLYDVFLNIRDDEAEH 289
            K   +  P +A +Y+                     P++    ++ D+ L IR DEA+H
Sbjct: 269 PKFENIKIPTIAWQYW---------------------PELTENSSMLDLILRIRADEAKH 307


>gi|74272617|gb|ABA01104.1| mitochondrial alternative oxidase [Chlamydomonas incerta]
          Length = 260

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 26/174 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL--GGN 178
           R   LET+A  P      + H+       R   ++     E+ NE  HL+   +L   G 
Sbjct: 83  RMIFLETVAGCPGMVAGMLRHLKSLRSMSRDRGWIHTLLEEAENERMHLITFLQLRQPGP 142

Query: 179 AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA--QGEKLK 236
           A+     +AQ +    YF+    Y++SPR  + F   +E  A +TY   ++    G   K
Sbjct: 143 AFRAMVIVAQGVFFNAYFLA---YLLSPRTCHAFVGFLEEEAVKTYTHALEEIDAGRLWK 199

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHC 290
             PAP VA++Y+         +  T R             D+ L +R DEA H 
Sbjct: 200 DTPAPPVAVQYWG------LKQGATMR-------------DLILAVRADEACHA 234


>gi|149189352|ref|ZP_01867637.1| alternative oxidase [Vibrio shilonii AK1]
 gi|148836710|gb|EDL53662.1| alternative oxidase [Vibrio shilonii AK1]
          Length = 149

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 27/149 (18%)

Query: 142 MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM 201
           M +  GW R          E+ NE  HL+I  ++   +W  +R +       +  V   +
Sbjct: 6   MRDDEGWIREL------LDEAENERMHLMIFLDIAKPSW-LERLIVLLGQGVFIVVYSII 58

Query: 202 YVISPRMAYHFSECVESHAFETYDKFIKAQGEK-LKKMPAPAVAIKYYTGGDLYLFDEFQ 260
           Y++S ++A+      E  A ++Y ++++   E  ++ +PAP +AI YY   D  L     
Sbjct: 59  YLLSSKVAHRVVGYFEEEACKSYTEYLEKIDEGYIENIPAPQIAIDYYQLADDAL----- 113

Query: 261 TARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                         L DV L IR DEA H
Sbjct: 114 --------------LRDVVLRIRQDEAGH 128


>gi|342184601|emb|CCC94083.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 364

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 22/161 (13%)

Query: 110 LDALYRDRDYARFFVLETIARVPYF--AFISVLHMYESFGWWRRADY----------LKV 157
           +D L+R+R   R  +L+TIA  P    AF++ L M+     W+   Y          ++V
Sbjct: 121 VDKLFRERYIHRATMLKTIAPAPSLAGAFVANLKMF----LWKNVTYVPSSGGFAAEVRV 176

Query: 158 HFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVE 217
             A+S +   H+ I+  +       +R  A  +   ++F+   +++I PRMA+     + 
Sbjct: 177 LMAQSESHASHINILLSM-CEITLVERAAAVLLFGMHFFIFTLLFLIQPRMAFRLLGYLN 235

Query: 218 SHAFETYDKFIK-AQGEKLKKMPAPAVAIKYYT----GGDL 253
             +   +   I   +  K+ + P PA AI+Y+     GGD+
Sbjct: 236 EESVVIWTHMINDIELGKVVERPVPAAAIQYWGLHCFGGDI 276


>gi|428185052|gb|EKX53905.1| hypothetical protein GUITHDRAFT_100154 [Guillardia theta CCMP2712]
          Length = 285

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 28/176 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
           +R   LET+A VP      + H+       R   ++     E+ NE  HLL   +L   +
Sbjct: 96  SRICFLETVAAVPGMTAGMLRHLRSLRRMDRDHGWIHTLLEEAENERMHLLTFVKLKKPS 155

Query: 180 WWFDRFLAQHIAVAYYFVTVFM--YVISPRMAYHFSECVESHAFETYDKFI-KAQGEKLK 236
           + F   +   +A    F+ +F   Y+ SPR  + F   +E  A +TY   I +    KLK
Sbjct: 156 YAFRTAV---VATQGIFMNLFFVAYIASPRFCHRFVGYLEEEAVKTYTDIIHEIDNGKLK 212

Query: 237 K---MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                PAP +AI Y+                    RP   ++ D+ L +R DEA H
Sbjct: 213 HWQTQPAPQIAIDYW------------------HLRPD-ASMRDLMLAVRMDEANH 249


>gi|169858069|ref|XP_001835681.1| mitochondrial alternative oxidase [Coprinopsis cinerea
           okayama7#130]
 gi|116503357|gb|EAU86252.1| mitochondrial alternative oxidase [Coprinopsis cinerea
           okayama7#130]
          Length = 376

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE+IA VP     ++ H+       R + ++     E+ NE  HL+    L   + 
Sbjct: 170 RILFLESIAGVPGMVAATLRHLQSLRLMRRDSGWIHTCLEEAENERMHLMTFMTLRKPSI 229

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL----K 236
            F R +       +Y +    Y+ SP+  + F   +E  A  TY K IK   + L    +
Sbjct: 230 AF-RAMVLGAQGVFYNLFFLSYIFSPKTCHRFVGYLEEEAVVTYTKCIKELEDGLIPEWE 288

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             PAP +AI Y+                P+++      + D+   +R DE+ H
Sbjct: 289 GKPAPEIAIDYWRMS-------------PDAK------MIDLLYAVRSDESTH 322


>gi|114571108|ref|YP_757788.1| alternative oxidase [Maricaulis maris MCS10]
 gi|114341570|gb|ABI66850.1| alternative oxidase [Maricaulis maris MCS10]
          Length = 214

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 21/182 (11%)

Query: 109 VLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHH 168
           + D  +  R   R  VLET+A VP      + H+           +++    E+ NE  H
Sbjct: 33  IADTFFAKRYGHRAVVLETVAAVPGMVGGLLQHLKAIRRIRDDEGWIRTLLDEAENERMH 92

Query: 169 LLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
           L+   E+      F+R +   +   +Y    F+Y+ +PR A+      E  A  +Y +++
Sbjct: 93  LMTFIEIA-KPTLFERIVIMVVQAIFYNCYFFLYLFAPRTAHRVVGYFEEEAVISYTQYL 151

Query: 229 KA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEA 287
           +     + + + AP +AI Y+               LP + R     L +V + +R DEA
Sbjct: 152 EGIDAGRHENVAAPQIAIDYWN--------------LPANAR-----LREVVIAVRADEA 192

Query: 288 EH 289
            H
Sbjct: 193 GH 194


>gi|354548355|emb|CCE45091.1| hypothetical protein CPAR2_700950 [Candida parapsilosis]
          Length = 370

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 32/179 (17%)

Query: 120 ARFFVLETIARVP--YFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGG 177
            R   LE+IA VP    +F+  LH        R   +++    E++NE  HLL   ++G 
Sbjct: 165 TRVIFLESIAGVPGSVASFLRTLHSLRLLK--RDKAWIETLQDEAYNERMHLLTFIKIGQ 222

Query: 178 NAWWFDR--FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-- 233
            +W+     +L Q +    +F   F Y+ +P+  + F   +E  A  TY   +    +  
Sbjct: 223 PSWFTKTIIYLGQGVFTNLFF---FCYLTNPKYCHRFVGYLEEEAVRTYTHLLDELDDPN 279

Query: 234 KLK---KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           KLK    M  P +A+ Y+      L +E               +  D+ L IR DE++H
Sbjct: 280 KLKDFQSMLIPTIAVNYWPS----LSEE--------------SSFKDLILRIRADESKH 320


>gi|358400759|gb|EHK50085.1| hypothetical protein TRIATDRAFT_51260 [Trichoderma atroviride IMI
           206040]
          Length = 359

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 30/189 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE+IA VP      + H+    G  R   +++    ES+NE  HLL    +     
Sbjct: 160 RFVFLESIAGVPGMVGGMLRHLRSLRGMKRDNGWIETLLEESYNERMHLLTFMTMCEPGL 219

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIKAQGEKL---- 235
           +    +    A   +F ++F+ Y++ P++ + F   +E  A  TY + I    E      
Sbjct: 220 FMKLMIIG--AQGVFFNSLFVAYLLHPKIVHRFVGYLEEEAVHTYTRAIHEIEEGHLPRW 277

Query: 236 --KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
              K   P +A++Y+               +P   R     + D+ L IR DEA H    
Sbjct: 278 TDPKFRIPDIAVQYW--------------HMPEGHR----TMKDLILYIRADEAGH---R 316

Query: 294 KACQTHGNL 302
               T GNL
Sbjct: 317 GVNHTLGNL 325


>gi|38345481|emb|CAE01695.2| OSJNBa0010H02.19 [Oryza sativa Japonica Group]
          Length = 125

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 20/110 (18%)

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMP 239
           W++R L   +   ++      Y++SP++A+     +E  A  +Y +++K  +  K++ +P
Sbjct: 8   WYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVP 67

Query: 240 APAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           AP +AI Y+                   R P    L DV + +R DEA H
Sbjct: 68  APPIAIDYW-------------------RLPAGATLKDVVVVVRADEAHH 98


>gi|412992248|emb|CCO19961.1| alternative oxidase [Bathycoccus prasinos]
          Length = 408

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 73/187 (39%), Gaps = 30/187 (16%)

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
           +L +D+   RF  LET+A +P      + HM           ++     E+ NE  HL+ 
Sbjct: 194 SLTKDQWLFRFIFLETVAGIPGMVAGMLRHMNSLRLLRHDNGWIHTLLEEAENERMHLMT 253

Query: 172 MEELGGNAWWFDR--FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
              +   + +F      AQ +    +F   F Y+ISPR  + F   +E  A  TY   + 
Sbjct: 254 FLNMKQPSIFFRAGVLAAQGVFFNAFF---FSYLISPRTCHRFVGYLEEEAVRTYTHALN 310

Query: 230 ------AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
                     +  K  AP +AI+Y+        DE  T R             DV L +R
Sbjct: 311 DIDSGGTDARQWAKERAPKLAIEYWK------MDEDATIR-------------DVLLAVR 351

Query: 284 DDEAEHC 290
            DEA H 
Sbjct: 352 ADEASHA 358


>gi|156061475|ref|XP_001596660.1| hypothetical protein SS1G_02882 [Sclerotinia sclerotiorum 1980]
 gi|154700284|gb|EDO00023.1| hypothetical protein SS1G_02882 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 360

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 30/190 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R+  LE++A VP      + H+    G  R   +++    E++NE  HLL   ++     
Sbjct: 156 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 215

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKK- 237
           +    +    A   +F + F+ Y++SPR  + F   +E  A  TY   I+  +   L K 
Sbjct: 216 FMRTMILG--AQGVFFNSFFICYLLSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKW 273

Query: 238 ----MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
                 AP +AI+Y+               +P  +R    ++ D+   IR DEA+H    
Sbjct: 274 SDPNFKAPDLAIEYWG--------------MPEDQR----SMRDLLYYIRADEAKH---R 312

Query: 294 KACQTHGNLR 303
           +   T GNLR
Sbjct: 313 EVNHTLGNLR 322


>gi|33327042|gb|AAQ08895.1| SHAM-sensitive alternative terminal oxidase isozyme I [Yarrowia
           lipolytica]
          Length = 341

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 31/188 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE+IA VP      + H++      R   +++    E++NE  HLL   +L   + 
Sbjct: 140 RFLFLESIAGVPGMVAGMIRHLHSLRALRRDRAWIESLVEEAYNERMHLLTFLKLQKPSV 199

Query: 181 WF--DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEK 234
                  + Q I    +F++   Y+ISP   + F   +E  A  TY + ++     +  +
Sbjct: 200 QMRTGLLIGQIIFYNLFFIS---YLISPATCHRFVGYLEEEAVITYTRCLEDIDAGRLPE 256

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMK 294
           L  M  P +A  Y+     ++ D+                + D+   +R DEA+HC   +
Sbjct: 257 LASMEVPDIARTYW-----HMEDDC--------------TMRDLIQYVRADEAKHC---E 294

Query: 295 ACQTHGNL 302
              T GNL
Sbjct: 295 VNHTFGNL 302


>gi|428185051|gb|EKX53904.1| hypothetical protein GUITHDRAFT_63810 [Guillardia theta CCMP2712]
          Length = 246

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 28/176 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
           +R   LET+A VP      + H+       R   ++     E+ NE  HLL   +L   +
Sbjct: 58  SRICFLETVAAVPGMTAGMLRHLRSLRRMDRDHGWIHTLLEEAENERMHLLTFVKLKKPS 117

Query: 180 WWFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI-KAQGEKLK 236
           + F   +   Q I +  +FV    Y+ SPR  + F   +E  A +TY   I +    KLK
Sbjct: 118 YAFRTAVVATQGIFMNLFFVA---YIASPRFCHRFVGYLEEEAVKTYTDIIHEIDNGKLK 174

Query: 237 K---MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                PAP +AI Y+                    RP   ++ D+ L +R DEA H
Sbjct: 175 HWQTQPAPQIAIDYW------------------HLRPD-ASMRDLMLAVRMDEANH 211


>gi|428185053|gb|EKX53906.1| hypothetical protein GUITHDRAFT_63923 [Guillardia theta CCMP2712]
          Length = 247

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 28/176 (15%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
           +R   LET+A VP      + H+       R   ++     E+ NE  HLL   +L   +
Sbjct: 58  SRICFLETVAAVPGMTAGMLRHLRSLRRMDRDHGWIHTLLEEAENERMHLLTFVKLKKPS 117

Query: 180 WWFDRFLAQHIAVAYYFVTVFM--YVISPRMAYHFSECVESHAFETYDKFI-KAQGEKLK 236
           + F   +   +A    F+ +F   Y+ SPR  + F   +E  A +TY   I +    KLK
Sbjct: 118 YAFRTAV---VATQGIFMNLFFVAYIASPRFCHRFVGYLEEEAVKTYTDIIHEIDNGKLK 174

Query: 237 K---MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                PAP +AI Y+                    RP   ++ D+ L +R DEA H
Sbjct: 175 HWQTQPAPQIAIDYW------------------HLRPD-ASMRDLMLAVRMDEANH 211


>gi|71609886|dbj|BAE16577.1| alternative oxidase [Trypanosoma congolense]
          Length = 323

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 23/172 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP      + H+       R   ++     E+ NE  HL+   EL    +
Sbjct: 118 RCLFLETVAGVPGMVGGMLRHLKSLRYMTRDKGWINTLLVEAENERMHLMTFIELRQPGF 177

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE---KLKK 237
            F   +    A+ Y F+ +  Y+ISPR  + F   +E  A  TY   ++A  E   +  K
Sbjct: 178 TFRVSIIVTQAIMYLFL-LTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTK 236

Query: 238 MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
              P VA  Y+                  S+     +L +V   IR DEAEH
Sbjct: 237 SDVPEVARVYWN----------------LSKDATFRDLINV---IRADEAEH 269


>gi|255728095|ref|XP_002548973.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
 gi|240133289|gb|EER32845.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
          Length = 379

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A VP      + H++      R   +++    E++NE  HLL   ++G  +
Sbjct: 174 TRVIFLESVAGVPGSVAGFIRHLHSLRMLTRDKAWIESLQDEAYNERMHLLTFIKIGKPS 233

Query: 180 WWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-----AQ 231
           W F R   ++ Q +    +F   F+Y+++PR  + F   +E  A  TY   +       +
Sbjct: 234 W-FTRTIIYIGQGVFTNIFF---FLYLMNPRYCHRFVGYLEEEAVRTYTHLLDELDKPGK 289

Query: 232 GEKLKKMPAPAVAIKYY 248
               + M  P +A+ Y+
Sbjct: 290 LPNFQNMQIPTIAVDYW 306


>gi|190710537|gb|ACE95099.1| mitochondrial alternative oxidase precursor [Citrus sinensis]
          Length = 148

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 21/163 (12%)

Query: 128 IARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLA 187
           +A VP      +LH      +     ++K    E+ NE  HL+   E+    W ++R L 
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW-YERALV 59

Query: 188 QHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIK 246
                 ++      Y+ISP+ A+     +E     +Y +F+K   +  ++ +PAPA+A  
Sbjct: 60  FAXQGVFFNAYFLGYLISPKFAHRMVGYLEEXXIHSYTEFLKELDKGNIENVPAPAIATD 119

Query: 247 YYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           Y+                   R P    L DV L +  +EA H
Sbjct: 120 YW-------------------RLPPNSTLKDVVLVVXTNEAHH 143


>gi|196000520|ref|XP_002110128.1| hypothetical protein TRIADDRAFT_20435 [Trichoplax adhaerens]
 gi|190588252|gb|EDV28294.1| hypothetical protein TRIADDRAFT_20435 [Trichoplax adhaerens]
          Length = 181

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 70/175 (40%), Gaps = 28/175 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP        H++      R   ++     E+ NE  HLL    L     
Sbjct: 7   RIIFLETVAGVPGMVAAMTRHLHSLRRMRRDYGWIHTLLEEAENERMHLLTALHLKRPGP 66

Query: 181 WFDR--FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI----KAQGEK 234
           +F     L Q I V ++ ++   Y+ISPR  + F   +E  A  TY K +    +     
Sbjct: 67  FFRACVILGQGIFVNFFILS---YLISPRFCHRFVGYLEEEAVITYTKCLNQIDRGYLPM 123

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             KM AP +A  Y+                P+++      + DV L IR DEA H
Sbjct: 124 WAKMDAPDIARTYWQLK-------------PDAK------MRDVILAIRADEAHH 159


>gi|219114258|ref|XP_002176300.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402703|gb|EEC42692.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 218

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 76/188 (40%), Gaps = 32/188 (17%)

Query: 112 ALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLI 171
           ++ +D    R   LETIA VP      V H      + R    +++   E+ NE  HLL 
Sbjct: 48  SITQDMVLQRVIYLETIAAVPGMVAAIVRHFRSLRSFQRDGGMMQMFLDEANNERMHLLS 107

Query: 172 MEELGGNAWWFDRFLAQHIAVAYYFVTVFM--YVISPRMAYHFSECVESHAFETYDKFIK 229
              +   +  F    A  I     F + F+  YVISP+  + F   VE  A  TY K IK
Sbjct: 108 FVRMKDPSMLFR---AAVIGGQAGFGSAFLLLYVISPKFCHRFVGYVEEEACTTYTKIIK 164

Query: 230 A--------QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLN 281
           A        +    +   AP++A  Y+  G      E+ T          +E +Y V   
Sbjct: 165 AIEDAPEDNELAAWRTQLAPSIARSYWKLG------EYGTV---------LELMYAV--- 206

Query: 282 IRDDEAEH 289
            R DEAEH
Sbjct: 207 -RADEAEH 213


>gi|71609882|dbj|BAE16575.1| alternative oxidase [Trypanosoma congolense]
          Length = 323

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 23/172 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP      + H+       R   ++     E+ NE  HL+   EL    +
Sbjct: 118 RCLFLETVAGVPGMVGGMLRHLKSLRYMTRDKGWINTLLIEAENERMHLMTFIELRQPGF 177

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE---KLKK 237
            F   +    A+ Y F+ +  Y+ISPR  + F   +E  A  TY   ++A  E   +  K
Sbjct: 178 AFRVSIIVTQAIMYLFL-LTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTK 236

Query: 238 MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
              P VA  Y+                  S+     +L +V   IR DEAEH
Sbjct: 237 SDVPEVARVYWNL----------------SKDATFRDLINV---IRADEAEH 269


>gi|397914084|gb|AFO70093.1| alternative oxidase, partial [Fusarium pseudocircinatum]
          Length = 230

 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    ES+NE  HLL   ++    W
Sbjct: 92  RFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 151

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK 229
           +    +    A   +F ++F+ Y++SP++ + F   +E  A  TY + IK
Sbjct: 152 FMKMMIIG--AQGVFFNSLFVSYLVSPKIVHRFVGYLEEEAVHTYTRCIK 199


>gi|342184354|emb|CCC93836.1| putative alternative oxidase [Trypanosoma congolense IL3000]
          Length = 323

 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 23/172 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP      + H+       R   ++     E+ NE  HL+   EL    +
Sbjct: 118 RCLFLETVAGVPGMVGGMLRHLKSLRYMTRDKGWINTLLIEAENERMHLMTFIELRQPGF 177

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE---KLKK 237
            F   +    A+ Y F+ +  Y+ISPR  + F   +E  A  TY   ++A  E   +  K
Sbjct: 178 AFRVSIIVTQAIMYLFL-LTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTK 236

Query: 238 MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
              P VA  Y+                  S+     +L +V   IR DEAEH
Sbjct: 237 SDVPEVARVYWNL----------------SKDATFRDLINV---IRADEAEH 269


>gi|397914094|gb|AFO70098.1| alternative oxidase, partial [Fusarium pseudocircinatum]
          Length = 230

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP      + H+       R   +++    ES+NE  HLL   ++    W
Sbjct: 92  RFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 151

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK 229
           +    +    A   +F ++F+ Y++SP++ + F   +E  A  TY + IK
Sbjct: 152 FMKMMIIG--AQGVFFNSLFVSYLVSPKIVHRFVGYLEEEAVHTYTRCIK 199


>gi|448535195|ref|XP_003870925.1| Aox1 alternative oxidase [Candida orthopsilosis Co 90-125]
 gi|380355281|emb|CCG24798.1| Aox1 alternative oxidase [Candida orthopsilosis]
          Length = 370

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 32/179 (17%)

Query: 120 ARFFVLETIARVP--YFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGG 177
            R   LE+IA VP    +F+  LH        R   +++    E++NE  HLL   ++G 
Sbjct: 165 TRVIFLESIAGVPGSVASFLRTLHSLRLLK--RDKAWIETLQDEAYNERMHLLTFIKIGQ 222

Query: 178 NAWWFDR--FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK--AQGE 233
            +W+     +L Q +    +F   F Y+ +P+  + F   +E  A  TY   +       
Sbjct: 223 PSWFTKTIIYLGQGVFTNLFF---FCYLANPKYCHRFVGYLEEEAVRTYTHLLDELEDPN 279

Query: 234 KLK---KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           KLK    M  P +A+ Y+      L +E               +  D+ L IR DE++H
Sbjct: 280 KLKDFQNMLIPTIAVNYWPS----LTEE--------------SSFKDLILRIRADESKH 320


>gi|116310409|emb|CAH67418.1| OSIGBa0143N19.12 [Oryza sativa Indica Group]
          Length = 125

 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 20/110 (18%)

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMP 239
           W++R L   I   ++      Y++SP++A+     +E  A  +Y +++K  +  K++ +P
Sbjct: 8   WYERTLVLAIQRVFFNTYFIGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVP 67

Query: 240 APAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           AP +AI Y+              RLP         L DV + +R +EA H
Sbjct: 68  APPIAIDYW--------------RLPTG-----ATLKDVVVVVRANEAHH 98


>gi|71609884|dbj|BAE16576.1| alternative oxidase [Trypanosoma congolense]
          Length = 323

 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 23/172 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP      + H+       R   ++     E+ NE  HL+   EL    +
Sbjct: 118 RCLFLETVAGVPGMVGGMLRHLKSLRYMTRDKGWINTLLIEAENERMHLMTFIELRQPGF 177

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE---KLKK 237
            F   +    A+ Y F+ +  Y+ISPR  + F   +E  A  TY   ++A  E   +  K
Sbjct: 178 AFRVSIIVTQAIMYLFL-LTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTK 236

Query: 238 MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
              P VA  Y+                  S+     +L +V   IR DEAEH
Sbjct: 237 SDVPEVARVYWNL----------------SKDATFRDLINV---IRADEAEH 269


>gi|71747778|ref|XP_822944.1| alternative oxidase [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|51338731|sp|Q26710.2|AOX_TRYBB RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|17129642|dbj|BAB72245.1| alternative oxidase [Trypanosoma brucei brucei]
 gi|17129644|dbj|BAB72256.1| alternative oxidase [Trypanosoma brucei brucei]
 gi|45825838|gb|AAB46424.2| alternative oxidase [Trypanosoma brucei brucei]
 gi|62701577|dbj|BAD95615.1| alternative oxidase [Trypanosoma brucei gambiense]
 gi|70832612|gb|EAN78116.1| alternative oxidase [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|71609888|dbj|BAE16578.1| alternative oxidase [Trypanosoma evansi]
 gi|108743274|dbj|BAE95411.1| alternative oxidase [Trypanosoma brucei gambiense]
 gi|108743276|dbj|BAE95412.1| alternative oxidase [Trypanosoma brucei rhodesiense]
 gi|261332779|emb|CBH15774.1| alternative oxidase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 329

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 23/173 (13%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
           +R   LET+A VP      + H+       R   ++     E+ NE  HL+   EL    
Sbjct: 117 SRCLFLETVAGVPGMVGGMLRHLSSLRYMTRDKGWINTLLVEAENERMHLMTFIELRQPG 176

Query: 180 WWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE---KLK 236
                 +    A+ Y F+ V  YVISPR  + F   +E  A  TY   ++A  E   +  
Sbjct: 177 LPLRVSIIITQAIMYLFLLV-AYVISPRFVHRFVGYLEEEAVITYTGVMRAIDEGRLRPT 235

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           K   P VA  Y+                  S+     +L +V   IR DEAEH
Sbjct: 236 KNDVPEVARVYWNL----------------SKNATFRDLINV---IRADEAEH 269


>gi|343429594|emb|CBQ73167.1| related to alternative oxidase precursor, mitochondrial
           [Sporisorium reilianum SRZ2]
          Length = 409

 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LETIA VP     S  H+       R   ++     ++ NE  HLL    +     
Sbjct: 195 RIIFLETIAGVPGMVAASCRHLQSLRLMKRDKGWIHTMLEDAENERMHLLTFMAV-AKPG 253

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE----KLK 236
           W  R  A      +Y      Y+ +P++A+ F   +E  A  TY   ++   E    + +
Sbjct: 254 WIARTFALLAQGVFYNFFFVFYLTAPKVAHRFVGVLEEEAVLTYSYILEDLKEGRLPEWE 313

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +PAP +A +Y+  GD  +                   L DV   +R DEA H
Sbjct: 314 NVPAPEIAKQYWQLGDQAM-------------------LVDVIRAVRADEATH 347


>gi|40313538|dbj|BAD06177.1| alternative oxidase [Cryptosporidium parvum]
          Length = 335

 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 67/173 (38%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP      + H        R   ++     E+ NE  HLLI  +L     
Sbjct: 168 RIIFLETVAGVPGMVGAMLRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPS 227

Query: 181 WFDRFLAQHIAVAYY-FVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLK--- 236
              R        A+  F TVF Y+ISP+ ++ F   +E  A  TY   I+   + L    
Sbjct: 228 ILTRVSVIGTQFAFLIFYTVF-YIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGF 286

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +  AP  A  YY                     P+   + D+FL +R DE+ H
Sbjct: 287 ERKAPKFASVYYG-------------------LPEDATIRDLFLAMRRDESHH 320


>gi|297789037|ref|XP_002862531.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297308108|gb|EFH38789.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 334

 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 124 VLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 183
           +LET+A VP      +LH+     +     ++K    E+ NE  HL+ M EL     W++
Sbjct: 179 MLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMMELVKPK-WYE 237

Query: 184 RFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVES 218
           R L   +   ++   +  YV+SPR+A+  S    S
Sbjct: 238 RLLVMLVQGIFFNSFLVCYVMSPRLAHRISTMGRS 272


>gi|66359376|ref|XP_626866.1| AOX1,alternative oxidase, possible fungal or bacterial origin, 2
           transmembrane regions [Cryptosporidium parvum Iowa II]
 gi|35375829|gb|AAQ84544.1| alternative oxidase [Cryptosporidium parvum]
 gi|46228123|gb|EAK89022.1| AOX1,alternative oxidase, possible fungal or bacterial origin, 2
           transmembrane regions [Cryptosporidium parvum Iowa II]
          Length = 335

 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 67/173 (38%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP      + H        R   ++     E+ NE  HLLI  +L     
Sbjct: 168 RIIFLETVAGVPGMVGAMLRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPS 227

Query: 181 WFDRFLAQHIAVAYY-FVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLK--- 236
              R        A+  F TVF Y+ISP+ ++ F   +E  A  TY   I+   + L    
Sbjct: 228 ILTRVSVIGTQFAFLIFYTVF-YIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGF 286

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +  AP  A  YY                     P+   + D+FL +R DE+ H
Sbjct: 287 ERKAPKFASVYYG-------------------LPEDATIRDLFLAMRRDESHH 320


>gi|403416825|emb|CCM03525.1| predicted protein [Fibroporia radiculosa]
          Length = 341

 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE+IA VP     ++ H+       R + ++     E+ NE  HL+    L     
Sbjct: 134 RILFLESIAGVPGMVAATLRHLKSLRVMKRDSGWIHTLLEEAENERMHLMTFMVLRKPGI 193

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI-KAQGEKL---K 236
            F R +       +Y    F Y++SPR  + F   +E  A  TY + I + +  +L    
Sbjct: 194 IF-RAMVIGAQGVFYNAFFFCYLLSPRTCHRFVGHLEEEAVLTYSRCIDEVEAGRLPNWS 252

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           ++PAP +A  Y+              RL ++ +     L DV   +R DE+ H
Sbjct: 253 ELPAPEIAKDYW--------------RLESNAK-----LLDVLYAVRSDESTH 286


>gi|218195344|gb|EEC77771.1| hypothetical protein OsI_16922 [Oryza sativa Indica Group]
          Length = 128

 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 20/110 (18%)

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMP 239
           W++R L   +   ++      Y++SP++A+     +E  A  +Y +++K  +  K++ +P
Sbjct: 11  WYERTLVLAVQRVFFNTYFLGYLLSPKLAHRVVAYLEEEAIHSYTEYLKDIEAGKIENVP 70

Query: 240 APAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           AP +AI Y+              RLP         L DV + +R +EA H
Sbjct: 71  APPIAIDYW--------------RLPTG-----ATLKDVVVVVRANEAHH 101


>gi|294083747|ref|YP_003550504.1| alternative oxidase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663319|gb|ADE38420.1| Alternative oxidase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 200

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 38/192 (19%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRR-----ADYLKVHFAESWNE 165
           D  +  R   R  VLET+A VP      V  M+      R+       ++K    E+ NE
Sbjct: 26  DTFFAKRYGHRAVVLETVAGVPGM----VAGMWNHLSSLRKMKQDEKGWIKTLLDEAENE 81

Query: 166 MHHLLIMEELGG-NAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221
             HL+I  E+   NA   +R    LAQ     +YF+   +YV  P+ A+      E  A 
Sbjct: 82  RMHLMIFIEIAKPNA--LERAIILLAQFFFWHFYFI---LYVFFPKTAHRMVGYFEEQAV 136

Query: 222 ETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
            +Y +++ +   +K   + AP +A  YY                     PK   L DV +
Sbjct: 137 ISYTEYLDQIDSDKATNIDAPDIAKDYYG-------------------LPKTAKLRDVII 177

Query: 281 NIRDDEAEHCKT 292
            +R DE  H  T
Sbjct: 178 AVRQDEQGHSDT 189


>gi|301106719|ref|XP_002902442.1| alternative oxidase, putative [Phytophthora infestans T30-4]
 gi|262098316|gb|EEY56368.1| alternative oxidase, putative [Phytophthora infestans T30-4]
          Length = 258

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 10/140 (7%)

Query: 116 DRDYA-RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE 174
           D+D+  R   LE++A VP      + H+     + R   ++     E+ NE  HLLI   
Sbjct: 111 DKDWVNRCLFLESVAGVPGMVGGMLRHLRSLRKFKRDYGWIHTLLEEAENERMHLLIFMN 170

Query: 175 LGGNAWWFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK--- 229
           +    ++F   +  AQ +    +F+T   Y++SP+  + F   +E  A +TY   +K   
Sbjct: 171 IKQPGYFFRTLVLGAQGVFFNAFFLT---YLVSPKTCHRFVGYLEEEAVKTYTCLLKDIE 227

Query: 230 -AQGEKLKKMPAPAVAIKYY 248
               +  K+  AP +A  YY
Sbjct: 228 DGHLDAWKEKKAPLIAQTYY 247


>gi|67595330|ref|XP_665993.1| alternative oxidase [Cryptosporidium hominis TU502]
 gi|35375840|gb|AAQ84545.1| alternative oxidase [Cryptosporidium parvum]
 gi|54656887|gb|EAL35765.1| alternative oxidase [Cryptosporidium hominis]
          Length = 335

 Score = 44.7 bits (104), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 63/172 (36%), Gaps = 22/172 (12%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP      + H        R   ++     E+ NE  HLLI  +L     
Sbjct: 168 RIIFLETVAGVPGMVGAMLRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPS 227

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLK---K 237
              R        A+       Y+ISP+ ++ F   +E  A  TY   I+   + L    +
Sbjct: 228 ILTRVSVIGTQFAFLIFYTIFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFE 287

Query: 238 MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             AP  A  YY                     P+   + D+FL +R DE+ H
Sbjct: 288 KKAPKFASVYYG-------------------LPEDATIRDLFLAMRRDESHH 320


>gi|449548967|gb|EMD39933.1| hypothetical protein CERSUDRAFT_92418 [Ceriporiopsis subvermispora
           B]
          Length = 343

 Score = 44.7 bits (104), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE++A VP      + H+       R   ++     E+ NE  HL+    +   + 
Sbjct: 134 RILFLESVAGVPGMVAAVLRHLRSLRLMRRDGGWIHTLLEEAENERMHLMTFMSIRKPSI 193

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
           WF R +       +Y      Y++SP   + F   +E  A  TY + I+     +  +  
Sbjct: 194 WF-RAMVLGAQGVFYNAFFLSYLVSPTTCHRFVAHLEEEAVLTYTRCIEELESGRIPEWT 252

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             PAP +A  Y+                   R P    L DV   +R DE+ H
Sbjct: 253 DAPAPEIAKDYW-------------------RLPPDAKLLDVMYAVRSDESTH 286


>gi|77820273|gb|ABB04277.1| alternative oxidase isoform A [Acanthamoeba castellanii]
 gi|77820275|gb|ABB04278.1| alternative oxidase isoform A [Acanthamoeba castellanii]
 gi|440794064|gb|ELR15235.1| alternative oxidase isoform B, putative [Acanthamoeba castellanii
           str. Neff]
          Length = 370

 Score = 44.7 bits (104), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 9/138 (6%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           R   LET+A VP      + H++      R   ++     E+ NE  HLL   +L   G 
Sbjct: 196 RIIFLETVAGVPGSVAAILRHLHSLRRLKRDHGWIHTLLEEAENERMHLLTGLKLKQPGK 255

Query: 179 AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEK 234
            +    ++ Q I   ++F     Y++SPR  + F   +E  A  TY   +      +  +
Sbjct: 256 IFRTAVWVTQGIFFNFFFAA---YLVSPRFCHRFVGYLEEEAVRTYTHLLHDLDAGKLPE 312

Query: 235 LKKMPAPAVAIKYYTGGD 252
            K  PAP +A +Y+  GD
Sbjct: 313 WKDTPAPEIARQYWKMGD 330


>gi|297539819|ref|YP_003675588.1| Alternative oxidase [Methylotenera versatilis 301]
 gi|297259166|gb|ADI31011.1| Alternative oxidase [Methylotenera versatilis 301]
          Length = 212

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 33/199 (16%)

Query: 98  VNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRR 151
           V + +T+ +    D  + +R   R  VLET+A VP     ++ H      M    GW R+
Sbjct: 24  VALRITKILRFFADTFFANRYGHRAVVLETVAGVPGMVAGALQHLKAIRLMQPDNGWIRK 83

Query: 152 ADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYH 211
                    E+ NE  HL+    +      F+R L       +Y +   +Y+IS + A+ 
Sbjct: 84  L------LDEAENERMHLMTFIHI-AQPNRFERGLIMLAQGIFYNLFFLLYLISSKTAHR 136

Query: 212 FSECVESHAFETYDKFIKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRP 270
                E  A  +Y +++        + +PAP +AI Y+              +L  S R 
Sbjct: 137 LVGYFEEEAVYSYTEYLAGVDNGTYENVPAPQIAIDYW--------------QLDASAR- 181

Query: 271 KIENLYDVFLNIRDDEAEH 289
               L +V + +R+DEA H
Sbjct: 182 ----LREVIIAVRNDEANH 196


>gi|77820269|gb|ABB04275.1| alternative oxidase isoform B [Acanthamoeba castellanii]
 gi|77820271|gb|ABB04276.1| alternative oxidase isoform B [Acanthamoeba castellanii]
 gi|440802244|gb|ELR23175.1| alternative oxidase isoform A, putative [Acanthamoeba castellanii
           str. Neff]
          Length = 374

 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 9/138 (6%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           R   LET+A VP      + H++      R   ++     E+ NE  HLL   +L   G 
Sbjct: 200 RIIFLETVAGVPGSVAAILRHLHSLRRLKRDHGWIHTLLEEAENERMHLLTGLKLKQPGK 259

Query: 179 AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEK 234
            +    ++ Q I   ++F     Y++SPR  + F   +E  A  TY   +      +  +
Sbjct: 260 IFRTAVWVTQGIFFNFFFAA---YLVSPRFCHRFVGYLEEEAVRTYTHLLHDLDAGKLPE 316

Query: 235 LKKMPAPAVAIKYYTGGD 252
            K  PAP +A +Y+  GD
Sbjct: 317 WKDTPAPEIARQYWKMGD 334


>gi|50551827|ref|XP_503388.1| YALI0E00814p [Yarrowia lipolytica]
 gi|51701283|sp|Q8J0I8.1|AOX_YARLI RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|27263058|emb|CAD21442.1| alternative oxidase [Yarrowia lipolytica]
 gi|49649257|emb|CAG78967.1| YALI0E00814p [Yarrowia lipolytica CLIB122]
          Length = 353

 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 31/188 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE+IA VP      + H++      R   +++    E++NE  HLL   +L   + 
Sbjct: 152 RFLFLESIAGVPGMVAGMIRHLHSLRALRRDRAWIESLVEEAYNERMHLLTFLKLQKPSV 211

Query: 181 WF--DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEK 234
                  + Q I    +F++   Y+ISP   + F   +E  A  TY + ++     +  +
Sbjct: 212 QMRTGLLIGQIIFYNLFFIS---YLISPATCHRFVGYLEEEAVITYTRCLEDIDAGRLPE 268

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMK 294
           L  M  P +A  Y+     ++ D+                + D+   +R DEA+HC   +
Sbjct: 269 LASMEVPDIARTYW-----HMEDDC--------------TMRDLIQYVRADEAKHC---E 306

Query: 295 ACQTHGNL 302
              T GNL
Sbjct: 307 VNHTFGNL 314


>gi|116196990|ref|XP_001224307.1| hypothetical protein CHGG_05093 [Chaetomium globosum CBS 148.51]
 gi|88181006|gb|EAQ88474.1| hypothetical protein CHGG_05093 [Chaetomium globosum CBS 148.51]
          Length = 265

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 37/207 (17%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL--GGN 178
           RF  LET+A +P      + H++    +     ++K    ES+NE  HL+    +   G 
Sbjct: 54  RFVFLETVAGIPGAVAGGLRHLHSIRRFKLDQGWIKTLLEESYNERMHLMTFLAMYRPGR 113

Query: 179 AWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIKAQGEKL-- 235
              F  F AQ I    ++ T+F+ Y+IS    +     +E  A  TY K +    +    
Sbjct: 114 LMRFMVFAAQGI----FYNTMFIGYLISLGFCHRLVGYLEDEAVATYTKCLAEMDKGWLP 169

Query: 236 ----KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCK 291
                    P +A++Y+              ++P  RR     + D+ L IR DEA H  
Sbjct: 170 QWTDPGFKIPDIAVQYW--------------KMPEGRR----TMRDLILYIRADEASH-- 209

Query: 292 TMKACQTHGNL---RSPHSYSEDDFGC 315
                 T GNL     P+ + E D G 
Sbjct: 210 -RGVNHTLGNLDQASDPNPFMESDSGV 235


>gi|348681991|gb|EGZ21807.1| hypothetical protein PHYSODRAFT_496550 [Phytophthora sojae]
          Length = 306

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 32/177 (18%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVH--FAESWNEMHHLLIMEELGGN 178
           R   LE++A VP    +  +  +       + DY  +H    E+ NE  HLLI   +   
Sbjct: 130 RCLFLESVAGVP--GMVGGMLRHLRSLRLLKRDYGWIHTLLEEAENERMHLLIFMNIKQP 187

Query: 179 AWWFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQG 232
            ++F   +  AQ +    +F+T   Y++SP+  + F   +E  A +TY   ++       
Sbjct: 188 GYFFRALVVGAQGVFFNGFFLT---YLVSPKTCHRFVGYLEEEAVKTYSCLLQDIEDGHL 244

Query: 233 EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           +  K+  AP +A  YY                   + P+  ++YDV   +R DEA H
Sbjct: 245 DAWKEKKAPLIAQTYY-------------------KLPEDASIYDVVKCVRADEANH 282


>gi|448091414|ref|XP_004197325.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
 gi|448095979|ref|XP_004198356.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
 gi|359378747|emb|CCE85006.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
 gi|359379778|emb|CCE83975.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
          Length = 346

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 120 ARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
            R   LE++A VP      + H++      R   +++    E++NE  HLL   +LG  +
Sbjct: 142 TRVIFLESVAGVPGMVAAFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFMKLGRPS 201

Query: 180 WWFDR--FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY----DKFIKAQGE 233
           W+     ++ Q +    +F   F Y+++P+  + F   +E  A  TY    D+    +  
Sbjct: 202 WFTKLIVYIGQGVFCNLFF---FAYLVNPKYCHRFVGYLEEEAVSTYSHLLDELDAGKLP 258

Query: 234 KLKKMPAPAVAIKYYT 249
           +  ++  P ++  Y+T
Sbjct: 259 RFDEVKIPEISWHYWT 274


>gi|294867900|ref|XP_002765284.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
 gi|239865297|gb|EEQ98001.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
          Length = 328

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 28/175 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           R   LET+A VP      V H+       R   ++     E+ NE  HL+I   L   G 
Sbjct: 151 RVVFLETVAAVPGMVGGMVRHLNSLRNMERDHGWIHTLLEEAENERMHLMIALTLKEPGP 210

Query: 179 AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE----K 234
                  ++Q I   +++    +Y+++P+  + F   +E  A +TY   +K   E    +
Sbjct: 211 LLRGLVLVSQGI---FFWTYGLLYLLAPKFNHRFVGYLEEEAVKTYTNLLKCIDEGKVSE 267

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               PAP +A  YY  G+             N+       L DVF  IR DE+ H
Sbjct: 268 FASEPAPFIARDYYELGE-------------NA------TLRDVFACIRADESHH 303


>gi|384252235|gb|EIE25711.1| threonyl-tRNA synthetase [Coccomyxa subellipsoidea C-169]
          Length = 1049

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 77/196 (39%), Gaps = 40/196 (20%)

Query: 121  RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEEL--GGN 178
            R   LET+A VP      + HM       R   ++     E+ NE  HLL   +L   G 
Sbjct: 871  RIVFLETVAGVPGMVGGMLRHMRSLRVMERDHGWIHTLLEEAENERMHLLTFLKLRQPGP 930

Query: 179  AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI----KAQGEK 234
                   L Q +    YF   F Y++SP+  + F   +E  A +TY   I      +  +
Sbjct: 931  LVRAGVLLTQGVFFNLYF---FFYMLSPKHCHAFIGYLEEEAVKTYTHAIADIDNGKLPE 987

Query: 235  LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMK 294
                PAP +A K+Y     +   E  T R             D+ LN+R DE        
Sbjct: 988  WADKPAPDLA-KFY-----WKMSEDATMR-------------DLLLNVRADE-------- 1020

Query: 295  ACQTHGNLRSPHSYSE 310
            AC +H N    H++SE
Sbjct: 1021 ACHSHVN----HTFSE 1032


>gi|392566332|gb|EIW59508.1| alternative oxidase [Trametes versicolor FP-101664 SS1]
          Length = 315

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 28/175 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE+IA VP     ++ H+       R + ++     E+ NE  HL+    L   + 
Sbjct: 103 RILFLESIAAVPGMVAAALRHLRSLRLMQRDSGWIHTLLEEAENERMHLMTFMTLKNPSI 162

Query: 181 WFDRFLAQHIAVAYYFVTVFM--YVISPRMAYHFSECVESHAFETYDKFIK----AQGEK 234
            F    A  IA    F   F   Y+ISP  ++ F   +E  A  TY + I+        K
Sbjct: 163 LFR---AMVIAAQGVFYNAFFLSYLISPSTSHRFVGHLEEEAVITYTRCIQEIEAGHLPK 219

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
              +PAP +A  Y+  G             P+++        DV   +R DE+ H
Sbjct: 220 WADLPAPEIAKDYWRLG-------------PDAK------FLDVIYAVRSDESTH 255


>gi|256674265|gb|ACV04930.1| mitochondrial alternative oxidase [Blastocystis sp. Nand II]
          Length = 304

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 32/220 (14%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAE 161
           +  ++  + +A +R+    R   LE++A +P     S LH        +   ++K    E
Sbjct: 87  IVNALFKIGNAYFRENYILRAVFLESVASIPGLV-CSNLHHLRCLRRLQPDSWIKPLVDE 145

Query: 162 SWNEMHHLLIME---ELGGNAWWFDRFLAQHIAVAYYFVTVF--MYVISPRMAYHFSECV 216
           + NE  HLL +    +L      F R         + FVT+F  ++V +PR ++     +
Sbjct: 146 AENERMHLLAVRTYTKLTAVQKLFIRI------TQFSFVTLFSFLFVFAPRTSHRLVGFL 199

Query: 217 ESHAFETYDKFI-KAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENL 275
           E HA ++Y + I +     L+  PA  +   Y+                     P+   L
Sbjct: 200 EEHAVDSYTEMIRRIDSNTLENRPATQITKDYWG-------------------LPEDATL 240

Query: 276 YDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGC 315
            D  L IR DEA+H     +     + ++P S  +   GC
Sbjct: 241 RDALLVIRADEADHRLVNHSLGDAYDKKTPVSVKKWYAGC 280


>gi|222635049|gb|EEE65181.1| hypothetical protein OsJ_20292 [Oryza sativa Japonica Group]
          Length = 130

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 23/125 (18%)

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
           MH +  ME +     W++R L   +   ++      Y++SP++A+     +E  A   Y 
Sbjct: 1   MHLMTFMEAVKPR--WYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHPYT 58

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K  +  K++ +PAP +AI Y+                   R P    L DV + +R 
Sbjct: 59  EYLKDIEAGKIENVPAPPIAIDYW-------------------RLPAGATLKDVVI-VRA 98

Query: 285 DEAEH 289
           DEA H
Sbjct: 99  DEAHH 103


>gi|222631917|gb|EEE64049.1| hypothetical protein OsJ_18878 [Oryza sativa Japonica Group]
          Length = 131

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 22/125 (17%)

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
           MH +  ME       W++R L   +   ++      Y++SP++A+     +E  A  +Y 
Sbjct: 1   MHLMTFMEV--AKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEKEAIHSYT 58

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           K++K  +  K++ +PA  +AI Y+                   R P    L DV + +R 
Sbjct: 59  KYLKDNEAGKIENVPASPIAIDYW-------------------RLPAGATLKDVVVVVRA 99

Query: 285 DEAEH 289
           +EA H
Sbjct: 100 NEAHH 104


>gi|125546436|gb|EAY92575.1| hypothetical protein OsI_14314 [Oryza sativa Indica Group]
          Length = 95

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 40  RSLSRNFCRVQATILQDEEEK--VVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQS 97
           R+  R   R +A   Q E+++  V VEES P +    +  PP+    +A E WV+K EQS
Sbjct: 29  RAHRRRIFRAEAMKTQQEKKQTEVAVEESFPFR----ETAPPDEPLVTAEESWVVKLEQS 84

Query: 98  VNILLT 103
           VNI LT
Sbjct: 85  VNIFLT 90


>gi|238684055|gb|ACR54256.1| alternative oxidase [Anadara ovalis]
          Length = 109

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAY-YFVTVFM--YVISPRMAYHFSECVE 217
           E+ NE  HL+   +L   +W     L Q + +A   FVT F   Y++SPR  + F   +E
Sbjct: 4   EAENERMHLMTALQLKQPSW----LLRQCVVLAQGVFVTSFSLSYLVSPRFCHRFVGYLE 59

Query: 218 SHAFETYDKFI----KAQGEKLKKMPAPAVAIKYY 248
             A +TY K +    +   E  K  PAP VA++Y+
Sbjct: 60  EEAVKTYTKCLEDIEEGTMEIWKTKPAPDVAVRYW 94


>gi|154313707|ref|XP_001556179.1| alternative oxidase [Botryotinia fuckeliana B05.10]
          Length = 361

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 30/190 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R+  LE++A VP      + H+    G  R   +++    E++NE  HLL   ++     
Sbjct: 157 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 216

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKK- 237
           +    +    A   +F + F+ Y+ SPR  + F   +E  A  TY   I+  +   L K 
Sbjct: 217 FMRTMILG--AQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKW 274

Query: 238 ----MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
                 AP +A++Y+               +P   R    ++ D+   IR DEA+H    
Sbjct: 275 ADPDFKAPDLAVEYWG--------------MPEGNR----SMRDLLYYIRADEAKH---R 313

Query: 294 KACQTHGNLR 303
           +   T GNL+
Sbjct: 314 EVNHTLGNLK 323


>gi|347832413|emb|CCD48110.1| aox, alternative oxidase [Botryotinia fuckeliana]
          Length = 358

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 30/190 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R+  LE++A VP      + H+    G  R   +++    E++NE  HLL   ++     
Sbjct: 154 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 213

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKK- 237
           +    +    A   +F + F+ Y+ SPR  + F   +E  A  TY   I+  +   L K 
Sbjct: 214 FMRTMILG--AQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKW 271

Query: 238 ----MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
                 AP +A++Y+               +P   R    ++ D+   IR DEA+H    
Sbjct: 272 ADPDFKAPDLAVEYWG--------------MPEGNR----SMRDLLYYIRADEAKH---R 310

Query: 294 KACQTHGNLR 303
           +   T GNL+
Sbjct: 311 EVNHTLGNLK 320


>gi|51701285|sp|Q8NJ59.1|AOX_BOTFU RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|21953239|emb|CAD42731.1| alternative oxidase [Botryotinia fuckeliana]
          Length = 361

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 30/190 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R+  LE++A VP      + H+    G  R   +++    E++NE  HLL   ++     
Sbjct: 157 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 216

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKK- 237
           +    +    A   +F + F+ Y+ SPR  + F   +E  A  TY   I+  +   L K 
Sbjct: 217 FMRTMILG--AQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKW 274

Query: 238 ----MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
                 AP +A++Y+               +P   R    ++ D+   IR DEA+H    
Sbjct: 275 ADPDFKAPDLAVEYWG--------------MPEGNR----SMRDLLYYIRADEAKH---R 313

Query: 294 KACQTHGNLR 303
           +   T GNL+
Sbjct: 314 EVNHTLGNLK 323


>gi|395331045|gb|EJF63427.1| alternative oxidase [Dichomitus squalens LYAD-421 SS1]
          Length = 386

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LE+IA VP     ++ H+       R   ++     E+ NE  HL+    L   + 
Sbjct: 175 RILFLESIAAVPGMVAAALRHLRSLRLMRRDHGWIHTLLEEAENERMHLMTFMTLKNPSR 234

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLK 236
            F R +       +Y      Y+ISP   + F   +E  A  TY + I+     +  +  
Sbjct: 235 LF-RAMVLGAQGVFYNAFFLCYLISPSTCHRFVGHLEEEAVVTYTRCIQEIEAGRLPEWT 293

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +PAP +A  Y+  G             P+++        DV   +R DE+ H
Sbjct: 294 NLPAPEIAKDYWRLG-------------PDAK------FLDVVYAVRSDESTH 327


>gi|329902679|ref|ZP_08273233.1| putative oxidase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548651|gb|EGF33301.1| putative oxidase [Oxalobacteraceae bacterium IMCC9480]
          Length = 204

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 35/196 (17%)

Query: 102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMY------ESFGWWRRADYL 155
            T+ +  + D  +  R   R  VLET+A VP      + H+       +  GW      +
Sbjct: 24  FTKFLRFLADVFFAKRYGHRAVVLETVAAVPGMVGGLLQHLKSLRLIKDDNGW------V 77

Query: 156 KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSEC 215
                E+ NE  HL+   ++   +  F+R +     + +Y +  F+Y+ S + A+     
Sbjct: 78  HTLLDEAENERMHLMTFIQIAQPSG-FERLVIFVTQLVFYNLYFFIYLFSAKTAHRIVGY 136

Query: 216 VESHAFETYDKFIKA--QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIE 273
            E  A+ +Y +++     GE  + + APA+AIKY+   +L+          P++R     
Sbjct: 137 FEEEAYYSYTEYLAGIDNGEH-ENIAAPAIAIKYW---NLH----------PDAR----- 177

Query: 274 NLYDVFLNIRDDEAEH 289
            L DV + +R DEA H
Sbjct: 178 -LRDVVIAVRADEAGH 192


>gi|62548351|gb|AAX86821.1| putative alternative oxidase [Actinidia deliciosa]
          Length = 107

 Score = 42.4 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 140 LHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTV 199
           L  +E  G W     +K    E+ NE  HL+ M EL     W++R L   +   ++    
Sbjct: 13  LRKFEHSGGW-----IKALLEEAENERMHLMTMVELV-KPKWYERILVLTVQGVFFNAFF 66

Query: 200 FMYVISPRMAYHFSECVESHAFETYDKFIK 229
            +Y++SP++A+     +E  A  +Y +++K
Sbjct: 67  ALYLLSPKLAHRVVGYLEEEAIHSYTEYLK 96


>gi|336363765|gb|EGN92138.1| AOX, alternative oxidase mitochondrial precursor [Serpula lacrymans
           var. lacrymans S7.3]
 gi|336382841|gb|EGO23991.1| alternative oxidase, AOX [Serpula lacrymans var. lacrymans S7.9]
          Length = 384

 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 26/174 (14%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP      + H+       R + ++     E+ NE  HL+    L   + 
Sbjct: 173 RILFLETVAGVPGMVAAVLRHLGSLRLMRRDSGWIHTLLEEAENERMHLMTFMTLRKPSL 232

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKLKK-- 237
           +F R +       +Y +    Y+ISPR  + F   +E  A  TY + I+  +  +L +  
Sbjct: 233 FF-RAMVLGAQGVFYNLFFLSYMISPRTCHRFVGYLEEEAVLTYTRCIEEIEAGRLPEWT 291

Query: 238 -MPAPAVAIKYYTGGDLYLFDEFQTARL-PNSRRPKIENLYDVFLNIRDDEAEH 289
            + AP +A  Y+              RL P+++      L DV   +R DE+ H
Sbjct: 292 DLSAPEIAKDYW--------------RLAPDAK------LLDVMYAVRSDESTH 325


>gi|51701290|sp|Q96UR9.1|AOX_MONFR RecName: Full=Alternative oxidase, mitochondrial; AltName:
           Full=MfAOX1; Flags: Precursor
 gi|16517111|gb|AAL24516.1| alternative oxidase [Monilinia fructicola]
          Length = 358

 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 30/190 (15%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R+  LE++A VP      + H+    G  R   +++    E++NE  HLL   ++     
Sbjct: 154 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGL 213

Query: 181 WFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKK- 237
           +    +    A   +F + F+ Y+ SP+  + F   +E  A  TY   I+  +   L K 
Sbjct: 214 FMRTMILG--AQGVFFNSFFLCYLFSPKTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKW 271

Query: 238 ----MPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
                 AP +AI+Y+               +P   R    ++ D+   IR DEA+H    
Sbjct: 272 ADPNFKAPDLAIEYWG--------------MPEGHR----SMRDLLYYIRADEAKH---R 310

Query: 294 KACQTHGNLR 303
           +   T GNL+
Sbjct: 311 EVNHTLGNLK 320


>gi|428180112|gb|EKX48980.1| hypothetical protein GUITHDRAFT_68249 [Guillardia theta CCMP2712]
 gi|428180113|gb|EKX48981.1| hypothetical protein GUITHDRAFT_68214 [Guillardia theta CCMP2712]
          Length = 248

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 68/175 (38%), Gaps = 28/175 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP      + H+       R   ++     E+ NE  HLL   +L     
Sbjct: 59  RICFLETVAGVPGMTAGMLRHLRSLRIMDRDHGWIHTLLEEAENERMHLLTFVKLRRPG- 117

Query: 181 WFDRFLAQHIAVAYYFVTVFM--YVISPRMAYHFSECVESHAFETYDKFIKAQGEK---- 234
               F A  +     F+ VF   Y++SPR  + F   +E  A +TY   I A  +     
Sbjct: 118 --PLFRAAVVGTQGVFMNVFFLCYLVSPRFCHRFVGYLEEEAVKTYTDIINAIDDGRLGH 175

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            K   AP +AI Y+                    +P+   + D+ L +R DEA H
Sbjct: 176 WKTQAAPQIAIDYW------------------HLKPE-ATMRDLMLAVRADEACH 211


>gi|428184905|gb|EKX53759.1| hypothetical protein GUITHDRAFT_100729 [Guillardia theta CCMP2712]
          Length = 535

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 28/175 (16%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG--GN 178
           R   LET+A VP      + H+       R   ++     E+ NE  HLL    +   G 
Sbjct: 180 RAIFLETVAGVPGMVGGMLRHLRSLRTMTRDHGWIHTLLEEAENERMHLLTFVTIKKPGP 239

Query: 179 AWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE----K 234
            + +     Q + +  +FVT   Y+I P++ + F   +E  A +TY   + A  +     
Sbjct: 240 IFRWAVLGTQGVFMNLFFVT---YLIYPKICHRFVGYLEEEAVKTYTDILNAIDDGRLSS 296

Query: 235 LKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +   AP +AI Y+                    +P    + D+FL +R DEA H
Sbjct: 297 FRNARAPQIAIDYW------------------HMKPD-ATMRDLFLVVRADEANH 332


>gi|42733304|dbj|BAD11307.1| alternative oxidase [Trypanosoma vivax]
          Length = 328

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 67/172 (38%), Gaps = 23/172 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP      + H+       R   ++     E+ NE  HL+   EL     
Sbjct: 119 RCLFLETVAGVPGMVGGMLRHLTSLRQMRRDKGWINTLLVEAENERMHLMTFIELRQPGV 178

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKM- 238
            F   +    A+ Y F+ +  Y+ SPR  + F   +E  A  TY   ++A  + +L  M 
Sbjct: 179 VFRLSIKITQAIMYSFLLI-AYITSPRFVHRFVGYLEEEAVVTYTGILRAIDDGRLPPMK 237

Query: 239 -PAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
              P VA + Y G +                  K     D+   IR DEAEH
Sbjct: 238 NAVPDVA-RVYWGLN------------------KDATFRDLINVIRADEAEH 270


>gi|218197681|gb|EEC80108.1| hypothetical protein OsI_21855 [Oryza sativa Indica Group]
          Length = 130

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 23/125 (18%)

Query: 166 MHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225
           MH +  ME +     W++R L   +   ++      Y++SP++A+     +E  A   Y 
Sbjct: 1   MHLMTFMEAVKPR--WYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHPYT 58

Query: 226 KFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284
           +++K  +  K++ +PAP +AI Y+                   + P    L DV + +R 
Sbjct: 59  EYLKDIEAGKIENVPAPPIAIDYW-------------------QLPAGATLKDVVI-VRA 98

Query: 285 DEAEH 289
           DEA H
Sbjct: 99  DEAHH 103


>gi|295690408|ref|YP_003594101.1| alternative oxidase [Caulobacter segnis ATCC 21756]
 gi|295432311|gb|ADG11483.1| Alternative oxidase [Caulobacter segnis ATCC 21756]
          Length = 229

 Score = 41.2 bits (95), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 33/186 (17%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLH------MYESFGWWRRADYLKVHFAESWN 164
           D  +  R   R  VLET+A VP     ++ H      M    GW      +K    E+ N
Sbjct: 34  DTFFAKRYGHRAVVLETVAAVPGMVGATLNHLKCLRRMEGDKGW------IKTLMDEAEN 87

Query: 165 EMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224
           E  HL+   E+      F+RF+       +Y     +Y+IS + A+      E  A  +Y
Sbjct: 88  ERMHLMTFIEVAKPTL-FERFVVVAAQWVFYLFFFALYLISSKTAHRVVGYFEEEAVISY 146

Query: 225 DKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
             ++    E +   + AP +A+ Y+                   + P    L DV   +R
Sbjct: 147 THYLAEIDEGRSANVAAPQIALDYW-------------------KLPTGATLRDVVEVVR 187

Query: 284 DDEAEH 289
            DEA H
Sbjct: 188 ADEAHH 193


>gi|238487558|ref|XP_002375017.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220699896|gb|EED56235.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 142

 Score = 41.2 bits (95), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 29/127 (22%)

Query: 191 AVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK----AQGEKLKKMPAPAVAI 245
           A   +F   F+ Y++SPR+ + F   +E  A  TY + I+     +  K  K+ AP +A+
Sbjct: 8   AQGVFFNGFFLSYLMSPRICHRFVGYLEEEAVLTYTRAIQDIEHGKLPKWTKLEAPEIAV 67

Query: 246 KYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRS- 304
           +Y+              ++P  +R     + D+ + +R DEA+H    +   T GNL   
Sbjct: 68  QYW--------------KMPEGQR----TMKDLLMYVRADEAKH---REVNHTLGNLNQA 106

Query: 305 --PHSYS 309
             P+ YS
Sbjct: 107 ADPNPYS 113


>gi|295646739|gb|ADG23120.1| alternative oxidase [Rhizoplaca chrysoleuca]
          Length = 180

 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           RF  LE++A VP     S+ H++      R   +++    E++NE  HLL   ++     
Sbjct: 58  RFLFLESVAGVPGMVAASIRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFMKIAEPG- 116

Query: 181 WFDRFLAQHIAVA---YYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI 228
              RF+   I  A   +Y    F Y++SPR  + F   +E  A  TY + +
Sbjct: 117 ---RFMKLMILGAQGVFYNGFFFAYLLSPRTCHRFVGYLEEEAVLTYTRVL 164


>gi|299752789|ref|XP_001832846.2| alternative oxidase [Coprinopsis cinerea okayama7#130]
 gi|298410001|gb|EAU88999.2| alternative oxidase [Coprinopsis cinerea okayama7#130]
          Length = 362

 Score = 40.8 bits (94), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 46/194 (23%)

Query: 121 RFFVLETIARVPYFAFISVLH------MYESFGWWR------------RADYLKVH--FA 160
           R   LETIA VP     ++ H      M    GW+              A + ++H    
Sbjct: 136 RILFLETIAGVPGMVAATIRHLQSLRLMRRDNGWYGLNQRLRGMVGVLNACFHRIHTCLE 195

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           E+ NE  HL+    L   +  F   +     V +Y +    Y+ISP+  + F   +E  A
Sbjct: 196 EAENERMHLMTFMTLRRPSLPFRAIILAAQGV-FYNLFFLSYIISPKTCHRFVGYLEEEA 254

Query: 221 FETYDKFIKAQGEKL----KKMPAPAVAIKYYTGGDLYLFDEFQTARL-PNSRRPKIENL 275
             TY K I      L       PAP ++I Y+              RL P+++      +
Sbjct: 255 VYTYTKCINELEAGLIPEWTSKPAPEISIDYW--------------RLSPDAK------M 294

Query: 276 YDVFLNIRDDEAEH 289
            D+   +R DE  H
Sbjct: 295 LDLLYAVRSDETTH 308


>gi|359786470|ref|ZP_09289605.1| Alternative oxidase [Halomonas sp. GFAJ-1]
 gi|359296320|gb|EHK60573.1| Alternative oxidase [Halomonas sp. GFAJ-1]
          Length = 212

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 41/193 (21%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMY------ESFGWWRRADYLKVHFAESWN 164
           D  +  R   R  +LET+A VP     ++ H++      +  GW      ++    E+ N
Sbjct: 40  DVFFAGRYGHRAVILETVAAVPGMVGGAIQHLHALRRIKDDDGW------IRTLLDEAEN 93

Query: 165 EMHHLLIMEELGGNAWWFDRF---LAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221
           E  HL+   E+      F+RF   LAQ I      +   +Y+ S + A+     +E  A 
Sbjct: 94  ERMHLMTFIEV-AKPNRFERFIIMLAQGIFFN---LFFLLYLCSSKTAHRVVGYLEEEAV 149

Query: 222 ETYDKFIKA--QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVF 279
            +Y ++++   +GE  + +PAP +AI Y+               LP   R     L +V 
Sbjct: 150 YSYTEYLEGIDRGE-YENIPAPQIAIDYWN--------------LPQDAR-----LREVV 189

Query: 280 LNIRDDEAEHCKT 292
           + +R DEA+H  T
Sbjct: 190 VAVRADEADHRDT 202


>gi|294955666|ref|XP_002788619.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
 gi|239904160|gb|EER20415.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
          Length = 305

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 66/179 (36%), Gaps = 36/179 (20%)

Query: 121 RFFVLETIARVPYFA------FISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE 174
           R   LET+A VP           S+  M   FGW      +     E+ NE  HL+I   
Sbjct: 131 RVVFLETVAGVPGMVGAMNRHLRSLRKMERDFGW------IHTLLEEAENERMHLMIALS 184

Query: 175 LGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFI----KA 230
           L        R L      A++      Y +SP  A+ F   +E  A  TY   +    K 
Sbjct: 185 LMKPGPLL-RALVLGAQGAFFTFYGLAYALSPNYAHRFVGYLEEEAVLTYTCLLQSVDKG 243

Query: 231 QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           Q  +     AP VA  YY              +LP+S       L DVF  +R DE+ H
Sbjct: 244 QIPEFALQQAPFVAQDYY--------------QLPSS-----ATLRDVFACMRADESHH 283


>gi|222612438|gb|EEE50570.1| hypothetical protein OsJ_30719 [Oryza sativa Japonica Group]
          Length = 131

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 28/128 (21%)

Query: 166 MHHLLIMEELGGNAWWFDRFLA---QHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
           MH +  ME       W++R L    Q +    YF++   Y++SP++A+     +E  A +
Sbjct: 1   MHLMTFME--VAKLRWYERTLVLADQRVFFNAYFLS---YLLSPKLAHRVIGYLEEEAID 55

Query: 223 TYDKFIK-AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLN 281
           +Y +++K  +  K++ +P P +AI Y+                   R P    L DV + 
Sbjct: 56  SYTEYLKDIEAGKIENVPTPPIAIDYW-------------------RLPADATLKDVVVV 96

Query: 282 IRDDEAEH 289
           +  DEA H
Sbjct: 97  VCADEAHH 104


>gi|2662190|dbj|BAA23725.1| alternative oxidase [Chlamydomonas sp. W80]
          Length = 155

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 24/139 (17%)

Query: 155 LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFS 213
           L+    E+ NE  HLL   E+   +W F    A  +A   YF   F+ Y+ISP+  +   
Sbjct: 5   LQALLEEAENERMHLLTFLEMRQPSWMFRA--AVLLAQGAYFNMFFISYLISPKFCHAVV 62

Query: 214 ECVESHAFETYDKFIK--AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPK 271
             +E  A +TY   +     G   K  PAP   I Y+                P++    
Sbjct: 63  GYLEEEAVKTYTHLLHDIDAGHVWKDKPAPKTGIAYWKLS-------------PDA---- 105

Query: 272 IENLYDVFLNIRDDEAEHC 290
              + D+ L +R DEA H 
Sbjct: 106 --TMRDLILAVRADEASHS 122


>gi|358451628|ref|ZP_09162061.1| acriflavin resistance protein [Marinobacter manganoxydans MnI7-9]
 gi|357224097|gb|EHJ02629.1| acriflavin resistance protein [Marinobacter manganoxydans MnI7-9]
          Length = 1054

 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 55  QDEEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALY 114
           QD E+ +++E+   L+N PN      T S+ A E   I+ E    + +TE++I + +AL 
Sbjct: 55  QDIEKDILIEQERFLRNVPNLSRMTSTASSGAAE---IELEFPFGVNITETLIQINNALS 111

Query: 115 RDRDYAR 121
           +  DY R
Sbjct: 112 QVPDYPR 118


>gi|385333619|ref|YP_005887570.1| acriflavin resistance protein D [Marinobacter adhaerens HP15]
 gi|311696769|gb|ADP99642.1| acriflavin resistance protein D [Marinobacter adhaerens HP15]
          Length = 1054

 Score = 38.5 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 55  QDEEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALY 114
           QD E+ +++E+   L+N PN      T S+ A E   I+ E    + +TE++I + +AL 
Sbjct: 55  QDIEKDILIEQERFLRNVPNLSRMTSTASSGAAE---IELEFPFGVNITETLIQINNALS 111

Query: 115 RDRDYAR 121
           +  DY R
Sbjct: 112 QVPDYPR 118


>gi|33087085|gb|AAP92756.1| alternative oxidase 1c [Solanum lycopersicum]
          Length = 87

 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 125 LETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNA 179
           LET+A VP      +LH      +E  G W     +K    E+ NE  HL+   E+    
Sbjct: 1   LETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENERMHLMTFMEV-SKP 54

Query: 180 WWFDRFLAQHIAVAYYFVTVFMYVISPRMAY 210
            W++R L   +   ++ V    Y++SP++A+
Sbjct: 55  KWYERGLVLMVQGIFFNVYFMTYILSPKLAH 85


>gi|290980396|ref|XP_002672918.1| alternative oxidase [Naegleria gruberi]
 gi|284086498|gb|EFC40174.1| alternative oxidase [Naegleria gruberi]
          Length = 294

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 23/168 (13%)

Query: 124 VLETIARVPYFAFISVLHMYESFGWWRR-ADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
           VLET+A VP        H + S    RR   ++     E+ NE  HLL   E+     + 
Sbjct: 130 VLETVAAVPGIVAGGWRH-FSSLRLMRRDHGHIGELMEEAENERMHLLTWMEMT-KPTFL 187

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA-QGEKLKKMPAP 241
           +R L     VA+       Y ++PR  +     +E  A   Y +F+ A     +    AP
Sbjct: 188 ERLLVVGAQVAFTSFYTGAYFVNPRFCHRLVGYLEEEAVGAYTEFLNAIDNGDIPNCKAP 247

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +A+KY+                  + +P    + DV L IR DE  H
Sbjct: 248 EIALKYW------------------NLKPD-ATMRDVVLVIRGDECMH 276


>gi|403351227|gb|EJY75100.1| Alternative oxidase isoform B [Oxytricha trifallax]
          Length = 275

 Score = 38.1 bits (87), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LETIA VP       +H+           ++     E+ NE  HL +       ++
Sbjct: 68  RVIFLETIAGVPGMCGGMTIHLKSLRTLKPDRGFIHYLLEEAENERTHLFLFMNYKNPSY 127

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
            F   +A    V + F  ++ Y+ISPR  + F   +E  A  TY  F+K
Sbjct: 128 LFRAMIAMGQGVFWNFYFLW-YLISPRFCHRFVGYLEEEAVHTYSIFLK 175


>gi|348681989|gb|EGZ21805.1| hypothetical protein PHYSODRAFT_247287 [Phytophthora sojae]
          Length = 297

 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 13/136 (9%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVH--FAESWNEMHHLLIMEELGGN 178
           R   LE++A VP    +  +  +       + DY  +H    E+ NE  HLLI   +   
Sbjct: 161 RCLFLESVAGVP--GMVGGMLRHLRSLRLLKRDYGWIHTLLEEAENERMHLLIFMNIKQP 218

Query: 179 AWWFDRFL--AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK----AQG 232
            ++F   +  AQ +    +F+T   Y++SP+  + F   +E  A +TY   ++       
Sbjct: 219 GYFFRALVVGAQGVFFNGFFLT---YLVSPKTCHRFVGYLEEEAVKTYSCLLQDIEDGHL 275

Query: 233 EKLKKMPAPAVAIKYY 248
           +  K+  AP +A  YY
Sbjct: 276 DAWKEKKAPLIAQTYY 291


>gi|342873390|gb|EGU75576.1| hypothetical protein FOXB_13927 [Fusarium oxysporum Fo5176]
          Length = 616

 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 9/81 (11%)

Query: 104 ESVIMVLD--ALYRDRDYARFFVLETIARVPYF---AFISVLHMYESFGWWRRAD----Y 154
           E+V+ +L+   LY D   A+   +E I  +P +   ++ S+LH Y SF  +R+A     +
Sbjct: 260 ENVVAMLEKRPLYDDYWEAKRIPVENIDNIPMYVVASYSSMLHTYGSFQTFRQAKTEKKW 319

Query: 155 LKVHFAESWNEMHHLLIMEEL 175
           L+VH  + W++M+   + +EL
Sbjct: 320 LRVHPFQEWHDMYRPSVSDEL 340


>gi|145536776|ref|XP_001454110.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421854|emb|CAK86713.1| unnamed protein product [Paramecium tetraurelia]
          Length = 271

 Score = 37.7 bits (86), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 11/136 (8%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R   LET+A VP F      H+    G  R   ++     E+ NE  HLL    +   + 
Sbjct: 94  RVLFLETVAGVPGFVAGMHRHLRSLRGMKRDLGWIHTLLEEAENERVHLLTFLTIKKPSL 153

Query: 181 WFDR--FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF---IKAQGEKL 235
            F     LAQ   VA Y V    Y+I PR+ +     +E  A +TY      I+ +G  +
Sbjct: 154 IFRTGVILAQLWYVALYSVA---YMIQPRVCHRIVGYLEEEAVKTYTHMIEEIEIEGSSI 210

Query: 236 ---KKMPAPAVAIKYY 248
              K  PA   +I+Y+
Sbjct: 211 HSWKTRPAHQNSIEYW 226


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.134    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,400,424,725
Number of Sequences: 23463169
Number of extensions: 223300369
Number of successful extensions: 492467
Number of sequences better than 100.0: 673
Number of HSP's better than 100.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 520
Number of HSP's that attempted gapping in prelim test: 491423
Number of HSP's gapped (non-prelim): 744
length of query: 349
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 206
effective length of database: 9,003,962,200
effective search space: 1854816213200
effective search space used: 1854816213200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)