Query 018864
Match_columns 349
No_of_seqs 157 out of 366
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02478 alternative oxidase 100.0 7.8E-79 1.7E-83 581.9 20.1 206 66-306 102-315 (328)
2 PF01786 AOX: Alternative oxid 100.0 3.2E-76 6.9E-81 540.7 18.5 197 70-301 1-207 (207)
3 cd01053 AOX Alternative oxidas 100.0 5E-75 1.1E-79 518.5 17.2 166 114-302 1-167 (168)
4 cd01042 DMQH Demethoxyubiquino 97.2 0.0047 1E-07 56.0 10.8 102 150-292 27-133 (165)
5 PF03232 COQ7: Ubiquinone bios 96.9 0.0047 1E-07 56.3 8.6 99 156-292 36-139 (172)
6 COG2941 CAT5 Ubiquinone biosyn 95.0 0.22 4.7E-06 46.9 9.9 95 157-293 75-174 (204)
7 cd07908 Mn_catalase_like Manga 94.3 0.16 3.5E-06 43.8 6.8 128 123-292 17-149 (154)
8 cd01045 Ferritin_like_AB Uncha 92.3 3.4 7.4E-05 33.2 11.3 100 153-292 28-134 (139)
9 cd01051 Mn_catalase Manganese 91.1 0.68 1.5E-05 41.4 6.5 117 123-292 24-147 (156)
10 cd00657 Ferritin_like Ferritin 89.0 2.4 5.3E-05 32.1 7.3 97 151-293 26-126 (130)
11 cd01044 Ferritin_CCC1_N Ferrit 77.1 8.4 0.00018 32.4 6.2 71 150-230 25-101 (125)
12 PRK13456 DNA protection protei 68.0 8.9 0.00019 36.0 4.7 122 119-293 25-158 (186)
13 KOG4061 DMQ mono-oxygenase/Ubi 65.1 12 0.00025 35.7 4.8 91 164-292 89-184 (217)
14 PRK12482 flagellar motor prote 39.9 2.1E+02 0.0045 28.5 9.2 91 173-279 189-280 (287)
15 COG3160 Rsd Regulator of sigma 39.0 80 0.0017 29.1 5.7 71 173-249 10-96 (162)
16 COG1633 Uncharacterized conser 36.5 70 0.0015 29.3 5.0 21 272-292 52-72 (176)
17 cd01045 Ferritin_like_AB Uncha 35.7 58 0.0013 26.0 3.9 20 274-293 28-47 (139)
18 PF13030 DUF3891: Protein of u 34.6 2.7E+02 0.0059 26.3 8.8 83 68-176 59-142 (221)
19 PF02915 Rubrerythrin: Rubrery 34.3 68 0.0015 25.7 4.2 49 205-292 84-132 (137)
20 PF02915 Rubrerythrin: Rubrery 28.8 88 0.0019 25.0 3.9 20 274-293 30-49 (137)
21 KOG0064 Peroxisomal long-chain 27.0 3.9E+02 0.0085 29.8 9.3 92 105-211 192-291 (728)
22 PRK10467 hydrogenase 2 large s 24.3 3.7E+02 0.008 29.3 8.6 67 113-179 44-115 (567)
23 PF11583 AurF: P-aminobenzoate 20.1 2.2E+02 0.0048 27.2 5.4 59 118-176 82-140 (304)
No 1
>PLN02478 alternative oxidase
Probab=100.00 E-value=7.8e-79 Score=581.93 Aligned_cols=206 Identities=25% Similarity=0.387 Sum_probs=196.6
Q ss_pred CCCCCCCCCCC-------CCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccccchhhhhhhhhhcCchhHHHH
Q 018864 66 SSPLKNFPNDD-------EPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFIS 138 (349)
Q Consensus 66 ~~p~~~~~~~~-------~~p~~~~d~~a~~~v~~~r~~fd~~~~~~l~~~~D~l~~~R~~~Rfi~LETVA~VPgmv~~~ 138 (349)
.+||++|+.++ .+|++++|++|+++|+.+|+.+|++ |++||++||+||||||||||||++|
T Consensus 102 ~~p~~~y~~~~~~~~~~H~~P~~~~Dk~A~~~Vk~lR~~~D~~------------f~~R~~~R~ifLETVA~VPGmV~gm 169 (328)
T PLN02478 102 FRPWETYKADLSIDLKKHHVPKTLLDKIAYWTVKSLRVPTDLF------------FQRRYGCRAMMLETVAAVPGMVGGM 169 (328)
T ss_pred cCCCccccHhhhchhhcCCCCCchHHHHHHHHHHHHHHHHHHH------------hhcchhhHHHHHHHHhcCchHHHHH
Confidence 47999998665 8999999999999999999988875 8999999999999999999999999
Q ss_pred HHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhh
Q 018864 139 VLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVES 218 (349)
Q Consensus 139 ~~HL~~~~g~~Rd~~wI~tlleEAeNErmHLLi~~~L~~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEE 218 (349)
++||+++|+|+||+|||++|||||||||||||||++|++|+ |++|++++++|++|||+|+++|++|||+||||||||||
T Consensus 170 lrHL~SLRr~krd~gWIrtLLeEAeNERMHLLtf~~l~~p~-w~eR~lv~~aQgvf~~~ff~~YLiSPr~aHRfvGYLEE 248 (328)
T PLN02478 170 LLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK-WYERALVIAVQGVFFNAYFLGYLISPKFAHRIVGYLEE 248 (328)
T ss_pred HHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhc-ccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhhhhhcc
Q 018864 219 HAFETYDKFIKAQG-EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQ 297 (349)
Q Consensus 219 EAV~TYT~~L~di~-~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~vn~anh 297 (349)
|||+|||+||+|++ |.++|+|||+||++||++ |+++||||||++||+|||+||+| ||
T Consensus 249 EAV~TYT~~L~eid~G~l~n~pAP~IAi~YW~L-------------------P~~atLrDVi~~IRaDEa~HRdV---NH 306 (328)
T PLN02478 249 EAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRL-------------------PADATLRDVVTVVRADEAHHRDV---NH 306 (328)
T ss_pred HHHHHHHHHHHHhhcCcccCCCCChHHHHHhCC-------------------CCCCcHHHHHHHHHhhhhhhhcc---Cc
Confidence 99999999999986 899999999999999987 88999999999999999999999 89
Q ss_pred cccCCCCCC
Q 018864 298 THGNLRSPH 306 (349)
Q Consensus 298 t~anL~s~~ 306 (349)
+++|+....
T Consensus 307 ~~sd~~~~~ 315 (328)
T PLN02478 307 FASDIHYQG 315 (328)
T ss_pred chhhhhhcc
Confidence 999975433
No 2
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=100.00 E-value=3.2e-76 Score=540.71 Aligned_cols=197 Identities=36% Similarity=0.527 Sum_probs=187.8
Q ss_pred CCCCCCC--------CCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccccchhhhhhhhhhcCchhHHHHHHH
Q 018864 70 KNFPNDD--------EPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH 141 (349)
Q Consensus 70 ~~~~~~~--------~~p~~~~d~~a~~~v~~~r~~fd~~~~~~l~~~~D~l~~~R~~~Rfi~LETVA~VPgmv~~~~~H 141 (349)
|+|+.++ ++|++++|+++..+|+.+|+.+|+ +|++||++||+||||||||||||++|++|
T Consensus 1 ~~~~~~~~~~v~~~h~~p~~~~d~~A~~~v~~lr~~~D~------------~~~~r~~~R~~~LEtVA~VPg~v~~~~~H 68 (207)
T PF01786_consen 1 PIYTEEELESVQVTHREPKTFSDRVAYGIVKFLRWFFDL------------LFEKRWLHRFIFLETVAGVPGMVGGMVRH 68 (207)
T ss_pred CCCCHHHHhhcccccCCCCcHHHHHHHHHHHHHHHHHHH------------hccccchhheeeeeecccCChHHHHHHHH
Confidence 6787655 799999999999998877776666 69999999999999999999999999999
Q ss_pred HHhhcCCccccchHHHHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHH
Q 018864 142 MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221 (349)
Q Consensus 142 L~~~~g~~Rd~~wI~tlleEAeNErmHLLi~~~L~~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV 221 (349)
|+++++||||+|||++|+|||||||||||||++|++|+ |++|++++++|++|||+|+++|++|||+|||||||||||||
T Consensus 69 l~slr~~~rd~g~I~~lleEaeNErmHLli~~~l~~p~-~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv 147 (207)
T PF01786_consen 69 LRSLRRMKRDGGWIKTLLEEAENERMHLLIFEELGKPS-WFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAV 147 (207)
T ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-ccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCC-CCCHHHHHHHHHhhhhhhHhhhhhcccc
Q 018864 222 ETYDKFIKAQG-EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPK-IENLYDVFLNIRDDEAEHCKTMKACQTH 299 (349)
Q Consensus 222 ~TYT~~L~di~-~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~-~atLrDV~l~IRaDEa~Hr~vn~anht~ 299 (349)
+|||+||+||+ |+++++|||+||++||++ |+ ++||||||++||+||++||++ ||++
T Consensus 148 ~tYt~~l~di~~g~l~~~paP~iAi~Yw~l-------------------~~~~atlrDvi~~IRaDEa~Hr~v---NH~~ 205 (207)
T PF01786_consen 148 HTYTEFLEDIDEGKLPNMPAPEIAIDYWGL-------------------PELDATLRDVILAIRADEAEHRDV---NHTL 205 (207)
T ss_pred HHHHHHHHHcccCCCCCCCCCHHHHHHhCC-------------------CccCchHHHHHHHHHhhHHHHHHh---hhhh
Confidence 99999999998 799999999999999998 55 899999999999999999999 8999
Q ss_pred cC
Q 018864 300 GN 301 (349)
Q Consensus 300 an 301 (349)
||
T Consensus 206 a~ 207 (207)
T PF01786_consen 206 AD 207 (207)
T ss_pred cC
Confidence 87
No 3
>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain. Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular
Probab=100.00 E-value=5e-75 Score=518.45 Aligned_cols=166 Identities=46% Similarity=0.786 Sum_probs=157.9
Q ss_pred hccccchhhhhhhhhhcCchhHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 018864 114 YRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVA 193 (349)
Q Consensus 114 ~~~R~~~Rfi~LETVA~VPgmv~~~~~HL~~~~g~~Rd~~wI~tlleEAeNErmHLLi~~~L~~p~~~~~R~laq~~~~~ 193 (349)
|++||++||+||||||||||||++|++||+|+||||||+||||+|||||||||||||||++|+||++|++|++++++++
T Consensus 1 ~~~r~~~R~~~LEtVA~vPgmv~~~~~HL~slr~~~rd~~wi~~lleEaeNErmHLltf~~l~~p~~~~r~~v~~~q~v- 79 (168)
T cd01053 1 YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFEELGGPGWWFRRFVAQHQAV- 79 (168)
T ss_pred CCCcceehhhhhhHhccCcHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-
Confidence 5789999999999999999999999999999999999999999999999999999999999999998888887777555
Q ss_pred HHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHHHHHHhc-ccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCC
Q 018864 194 YYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQG-EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI 272 (349)
Q Consensus 194 fy~~~~~~YlvSPr~ahRfvgylEEEAV~TYT~~L~di~-~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~ 272 (349)
|||+|+++|++|||+|||||||||||||.|||+||++++ |.++++|||+||++||++ |++
T Consensus 80 fy~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~g~~~~~paP~iAi~Yw~l-------------------~~~ 140 (168)
T cd01053 80 FYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEGLKPDLPAPEIAIEYYRL-------------------GED 140 (168)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhccccCCCCCCHHHHHHhCC-------------------CCC
Confidence 999999999999999999999999999999999999998 566699999999999998 689
Q ss_pred CCHHHHHHHHHhhhhhhHhhhhhcccccCC
Q 018864 273 ENLYDVFLNIRDDEAEHCKTMKACQTHGNL 302 (349)
Q Consensus 273 atLrDV~l~IRaDEa~Hr~vn~anht~anL 302 (349)
+||||||++||+|||+||+| ||+++|+
T Consensus 141 atl~Dvi~~IR~DEa~Hr~v---nh~~~~~ 167 (168)
T cd01053 141 ATLYDVFVAIRADEAEHRKV---NHACADL 167 (168)
T ss_pred CcHHHHHHHHHhhHHhHHHH---HHHhhcC
Confidence 99999999999999999999 6888876
No 4
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=97.15 E-value=0.0047 Score=56.01 Aligned_cols=102 Identities=20% Similarity=0.236 Sum_probs=72.8
Q ss_pred cccchHHHHHHHHHhHHHHHHHHHHh----c-CChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHHH
Q 018864 150 RRADYLKVHFAESWNEMHHLLIMEEL----G-GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY 224 (349)
Q Consensus 150 Rd~~wI~tlleEAeNErmHLLi~~~L----~-~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~TY 224 (349)
|+...-+.+-+=+..|..||..|.++ + .|+ ++.-+ --.+.| .+-++.=++.++.++-|+.-+|+-...-|
T Consensus 27 ~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps-~l~Pl---W~~~gf-~lG~~tal~G~~~a~~~~~avE~~V~~Hy 101 (165)
T cd01042 27 RDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPS-LLLPL---WYVAGF-ALGALTALLGKKAAMACTAAVETVVEEHY 101 (165)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-hHHHH---HHHHHH-HHHHHHHhhChHHHHHHHHHHHHHHHHHH
Confidence 33333344555567899999998665 2 455 23222 112223 23356677899999999999999999999
Q ss_pred HHHHHHhcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhh
Q 018864 225 DKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292 (349)
Q Consensus 225 T~~L~di~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~v 292 (349)
..-|++++.. + +..+++.|..+|+||.+|++.
T Consensus 102 ~~ql~~L~~~----------------~--------------------d~~l~~~l~~~r~DE~~H~d~ 133 (165)
T cd01042 102 NDQLRELPAQ----------------P--------------------DKELRAIIEQFRDDELEHADI 133 (165)
T ss_pred HHHHHHhhcc----------------C--------------------CHHHHHHHHHHHHHHHHHHHH
Confidence 9999988521 1 337999999999999999999
No 5
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=96.92 E-value=0.0047 Score=56.26 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=72.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHHHHHH
Q 018864 156 KVHFAESWNEMHHLLIMEELG-----GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230 (349)
Q Consensus 156 ~tlleEAeNErmHLLi~~~L~-----~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~TYT~~L~d 230 (349)
..+-+=.+.|..||..|.++- .|+ ++ ....-.+.| .+=++.=++.++.++-+++-+|+....-|..-|++
T Consensus 36 ~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS-~l---~Plw~~~g~-~LG~~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~~ 110 (172)
T PF03232_consen 36 PFLKEMAEEEKDHLAWFEQLLPELRVRPS-LL---NPLWYVAGF-ALGALTALLGDKAAMACTAAVETVVEEHYNDQLRE 110 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHcCCCCc-HH---HHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444558999999997763 466 23 222222333 23356778999999999999999999999999998
Q ss_pred hcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhh
Q 018864 231 QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292 (349)
Q Consensus 231 i~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~v 292 (349)
+... . .+.+..++++|..+|+||.+|+++
T Consensus 111 L~~~--------------~-------------------~~~d~~l~~~i~~~r~DE~~H~d~ 139 (172)
T PF03232_consen 111 LPAM--------------G-------------------EEEDPELRAIIEQFRDDELEHRDT 139 (172)
T ss_pred HHhc--------------c-------------------ccchHHHHHHHHHHHHHHHHHHHH
Confidence 8520 0 034557999999999999999999
No 6
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=95.00 E-value=0.22 Score=46.94 Aligned_cols=95 Identities=22% Similarity=0.230 Sum_probs=67.7
Q ss_pred HHHHHHHhHHHHHHHHHHh----c-CChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHHHHHHh
Q 018864 157 VHFAESWNEMHHLLIMEEL----G-GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQ 231 (349)
Q Consensus 157 tlleEAeNErmHLLi~~~L----~-~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~TYT~~L~di 231 (349)
.+.+-++.|-.||-.|.+. + .|+ ++ ..+-.+.+ | .+-.+.=|+++++|.-|++-+|+--..-|.+-|+++
T Consensus 75 ~l~em~d~E~~HL~~f~~~l~e~~vRPs-ll-~P~W~~~~--F-alGA~a~Llgdk~am~~teavE~vIe~Hy~~ql~~L 149 (204)
T COG2941 75 QLKEMADEEIDHLAWFEQRLLELGVRPS-LL-NPLWYAAA--F-ALGAGAGLLGDKAAMGFTEAVETVIEKHYDGQLREL 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcc-HH-HHHHHHHH--H-HHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455678899888654 2 355 22 22222211 1 223567899999999999999999999999988877
Q ss_pred cccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhhh
Q 018864 232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293 (349)
Q Consensus 232 ~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~vn 293 (349)
++ .++.++--+...|.||.+|.+.-
T Consensus 150 ~~-------------------------------------~d~~lr~~l~qfR~DE~eH~d~A 174 (204)
T COG2941 150 PN-------------------------------------LDAELRAILAQFRDDELEHLDNA 174 (204)
T ss_pred hh-------------------------------------ccHHHHHHHHHHhhHHHHHHHHH
Confidence 42 24478899999999999999983
No 7
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=94.25 E-value=0.16 Score=43.85 Aligned_cols=128 Identities=18% Similarity=0.158 Sum_probs=85.1
Q ss_pred hhhhhhhcCchhHHHHHHHHHhhcCCcc-ccchHHHHHHHHHhHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHH
Q 018864 123 FVLETIARVPYFAFISVLHMYESFGWWR-RADYLKVHFAESWNEMHHLLIMEEL----GGNAWWFDRFLAQHIAVAYYFV 197 (349)
Q Consensus 123 i~LETVA~VPgmv~~~~~HL~~~~g~~R-d~~wI~tlleEAeNErmHLLi~~~L----~~p~~~~~R~laq~~~~~fy~~ 197 (349)
+++|-++|.-|=-.++...++..+...- +...-+.+...|.-|+-|..++.++ ++...+...+.. .+.++..
T Consensus 17 ~~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~---~~~~~~~ 93 (154)
T cd07908 17 LLLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD---KFTYWTG 93 (154)
T ss_pred HHHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc---cCCcCCc
Confidence 5677788877766667777777665432 2345567778999999999876554 443322221110 0111100
Q ss_pred HHHHHhhchhhhhhhhhhhhhhHHHHHHHHHHHhcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHH
Q 018864 198 TVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYD 277 (349)
Q Consensus 198 ~~~~YlvSPr~ahRfvgylEEEAV~TYT~~L~di~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrD 277 (349)
-.+...-++.-+.++.--+|+.|+..|.++++..+ +...++
T Consensus 94 ~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~---------------------------------------d~~~r~ 134 (154)
T cd07908 94 KYVNYGESIKEMLKLDIASEKAAIAKYKRQAETIK---------------------------------------DPYIRA 134 (154)
T ss_pred cccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHcC---------------------------------------CHHHHH
Confidence 01122345666899999999999999999887542 347899
Q ss_pred HHHHHHhhhhhhHhh
Q 018864 278 VFLNIRDDEAEHCKT 292 (349)
Q Consensus 278 V~l~IRaDEa~Hr~v 292 (349)
++..|.+||..|.+.
T Consensus 135 ll~~I~~eE~~H~~~ 149 (154)
T cd07908 135 LLNRIILDEKLHIKI 149 (154)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999886
No 8
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=92.29 E-value=3.4 Score=33.15 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=64.9
Q ss_pred chHHHHHHHHHhHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHHHH
Q 018864 153 DYLKVHFAESWNEMHHLLIMEELG-------GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD 225 (349)
Q Consensus 153 ~wI~tlleEAeNErmHLLi~~~L~-------~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~TYT 225 (349)
+.-..+..-|..|+.|..++.++- -|..-...+........+ ..-......++..+.+..--+|..|+..|.
T Consensus 28 ~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~ 106 (139)
T cd01045 28 ELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPE-FKKALESLMDPLEALRLAIEIEKDAIEFYE 106 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhh-HHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 334466678899999998775552 121111111111111111 001245667778888999999999999999
Q ss_pred HHHHHhcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhh
Q 018864 226 KFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292 (349)
Q Consensus 226 ~~L~di~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~v 292 (349)
++++... +...+++|..|..||..|...
T Consensus 107 ~~~~~~~---------------------------------------d~~~~~~~~~l~~~E~~H~~~ 134 (139)
T cd01045 107 ELAEKAE---------------------------------------DPEVKKLFEELAEEERGHLRL 134 (139)
T ss_pred HHHHHcC---------------------------------------CHHHHHHHHHHHHHHHHHHHH
Confidence 9887653 226889999999999999876
No 9
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=91.08 E-value=0.68 Score=41.38 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=76.6
Q ss_pred hhhhhhhcCchhHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHH----hcCChHHHHHHHHHHHHHHHHHHH
Q 018864 123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE----LGGNAWWFDRFLAQHIAVAYYFVT 198 (349)
Q Consensus 123 i~LETVA~VPgmv~~~~~HL~~~~g~~Rd~~wI~tlleEAeNErmHLLi~~~----L~~p~~~~~R~laq~~~~~fy~~~ 198 (349)
.++|-++|.=|=-.+++.-++....+..+...-..+.+.|-.|..|+-++-+ |++.+. + .+|
T Consensus 24 ~l~~~~gG~~gEl~ai~qYl~q~~~~~~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~-----------g-~pw-- 89 (156)
T cd01051 24 LLQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQ-----------G-VPW-- 89 (156)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----------C-CcC--
Confidence 6788889888855555566666666533445666888999999999976533 332110 0 111
Q ss_pred HHHHhhc---hhhhhhhhhhhhhhHHHHHHHHHHHhcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCH
Q 018864 199 VFMYVIS---PRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENL 275 (349)
Q Consensus 199 ~~~YlvS---Pr~ahRfvgylEEEAV~TYT~~L~di~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atL 275 (349)
...|+.+ +...-+-+=-.|+.|..+|.+.++.++ |.++
T Consensus 90 ~~~yv~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~---------------------------------------Dp~v 130 (156)
T cd01051 90 TAAYIQSSGNLVADLRSNIAAESRARLTYERLYEMTD---------------------------------------DPGV 130 (156)
T ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC---------------------------------------CHHH
Confidence 1223221 222223333468899999999887763 3389
Q ss_pred HHHHHHHHhhhhhhHhh
Q 018864 276 YDVFLNIRDDEAEHCKT 292 (349)
Q Consensus 276 rDV~l~IRaDEa~Hr~v 292 (349)
+|++..|+.||..|.+.
T Consensus 131 ~~~l~~I~~rE~~H~~~ 147 (156)
T cd01051 131 KDTLSFLLVREIVHQNA 147 (156)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999876
No 10
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=89.00 E-value=2.4 Score=32.13 Aligned_cols=97 Identities=19% Similarity=0.115 Sum_probs=57.2
Q ss_pred ccchHHHHHHHHHhHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHH
Q 018864 151 RADYLKVHFAESWNEMHHLLIMEEL----GGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDK 226 (349)
Q Consensus 151 d~~wI~tlleEAeNErmHLLi~~~L----~~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~TYT~ 226 (349)
+.++.+.+...+..|+.|...+.++ +++....... ...+........++..+-...-..|..+...|..
T Consensus 26 ~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~E~~~~~~y~~ 98 (130)
T cd00657 26 DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH-------LLAAYALPKTSDDPAEALRAALEVEARAIAAYRE 98 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH-------HHHhcccCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778889999999877655 3322111111 0000111122334444444555566666666666
Q ss_pred HHHHhcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhhh
Q 018864 227 FIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293 (349)
Q Consensus 227 ~L~di~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~vn 293 (349)
+++... +..+++++..|..||..|....
T Consensus 99 ~~~~~~---------------------------------------d~~~~~~~~~~~~~E~~H~~~~ 126 (130)
T cd00657 99 LIEQAD---------------------------------------DPELRRLLERILADEQRHAAWF 126 (130)
T ss_pred HHHhcC---------------------------------------ChHHHHHHHHHHHHHHHHHHHH
Confidence 554431 3368999999999999998863
No 11
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=77.07 E-value=8.4 Score=32.39 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=45.3
Q ss_pred cccchHHHHHHHHHhHHHHHHHHHHhc----CChH--HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHH
Q 018864 150 RRADYLKVHFAESWNEMHHLLIMEELG----GNAW--WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFET 223 (349)
Q Consensus 150 Rd~~wI~tlleEAeNErmHLLi~~~L~----~p~~--~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~T 223 (349)
.|..--+.+..-|..|+.|..++.++. ++.. ++. ..++- .+.-++.|..+.++..-.|+.|+..
T Consensus 25 ~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~l~~~~g~~~~l~~~~~~E~~ai~~ 94 (125)
T cd01044 25 KDPENREILLKLAEDERRHAEFWKKFLGKRGVPPPRPKLK--------IFFYK--LLARIFGPTFVLKLLERGEERAIEK 94 (125)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHH--------HHHHH--HHHHHHhHHHHHHHHHHhHHhhHhh
Confidence 333444566778999999999987764 3321 111 11111 1233567778888888899999988
Q ss_pred HHHHHHH
Q 018864 224 YDKFIKA 230 (349)
Q Consensus 224 YT~~L~d 230 (349)
|+++.+.
T Consensus 95 Y~~~~~~ 101 (125)
T cd01044 95 YDRLLEE 101 (125)
T ss_pred HHhhhhh
Confidence 8876554
No 12
>PRK13456 DNA protection protein DPS; Provisional
Probab=68.01 E-value=8.9 Score=35.96 Aligned_cols=122 Identities=20% Similarity=0.182 Sum_probs=66.7
Q ss_pred chhhhhhhhhhcCchhHHHHHHHHHhhcCCccccchHHHHHHHHH-hHHHHHHH----HHHhcCChHHH-HHHHHHHHHH
Q 018864 119 YARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESW-NEMHHLLI----MEELGGNAWWF-DRFLAQHIAV 192 (349)
Q Consensus 119 ~~Rfi~LETVA~VPgmv~~~~~HL~~~~g~~Rd~~wI~tlleEAe-NErmHLLi----~~~L~~p~~~~-~R~laq~~~~ 192 (349)
+++++-=|-+|-.=|..... -.-|..++. |+..|+++- .|+-|-.. ..+|||.+..- ..|..
T Consensus 25 Ln~AlA~E~~a~~~Y~~~a~-----~~~G~~~e~--V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~----- 92 (186)
T PRK13456 25 LVKNAAAEFTTYYYYTILRA-----HLIGLEGEG--LKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHD----- 92 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhCcCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhh-----
Confidence 34555566666555544332 333554332 444455544 78888754 35666543211 11111
Q ss_pred HHHHHHHHHHhhchhh---hhhhhhh---hhhhHHHHHHHHHHHhcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCC
Q 018864 193 AYYFVTVFMYVISPRM---AYHFSEC---VESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPN 266 (349)
Q Consensus 193 ~fy~~~~~~YlvSPr~---ahRfvgy---lEEEAV~TYT~~L~di~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~ 266 (349)
+--..|.=.|.- .-.++.. -|..|+.+|++.++..++
T Consensus 93 ----ls~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~--------------------------------- 135 (186)
T PRK13456 93 ----ISACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTAG--------------------------------- 135 (186)
T ss_pred ----hhcCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------------------
Confidence 111222222332 2222221 266788888888887642
Q ss_pred CCCCCCCCHHHHHHHHHhhhhhhHhhh
Q 018864 267 SRRPKIENLYDVFLNIRDDEAEHCKTM 293 (349)
Q Consensus 267 ~rrP~~atLrDV~l~IRaDEa~Hr~vn 293 (349)
.|-+=+|+++.|=+||.+|.+-.
T Consensus 136 ----kDp~T~~l~~~IL~dE~eH~~dl 158 (186)
T PRK13456 136 ----KDPRTYDLALAILQEEIEHEAWF 158 (186)
T ss_pred ----CCccHHHHHHHHHHHHHHHHHHH
Confidence 24478899999999999999983
No 13
>KOG4061 consensus DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5 [General function prediction only]
Probab=65.14 E-value=12 Score=35.67 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHHHHHHhcccccCC
Q 018864 164 NEMHHLLIMEELG-----GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKM 238 (349)
Q Consensus 164 NErmHLLi~~~L~-----~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~TYT~~L~di~~~~k~~ 238 (349)
.|-.||-+|.+|. .|+ ++.-+.-. ..| -+-.-.-|++++.|-.--.-+|+--..-|-.-|+++-+.-
T Consensus 89 qEk~Hl~tf~~l~~k~rVrpT-~l~P~w~v---agf-alGaGTALlg~eaAMACT~AVEtvIg~HYNdQlr~l~~~~--- 160 (217)
T KOG4061|consen 89 QEKEHLKTFENLALKHRVRPT-VLTPLWNV---AGF-ALGAGTALLGKEAAMACTEAVETVIGGHYNDQLRELAEDD--- 160 (217)
T ss_pred HHHHHHHHHHHHHHHccCCch-hhhhHHHH---HHH-HhccchhhhChHHHHHHHHHHHHHHHHhhhHHHHHHHHhC---
Confidence 5778999998875 344 23222211 112 1224566788888877777777777777777666653110
Q ss_pred CCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhh
Q 018864 239 PAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292 (349)
Q Consensus 239 pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~v 292 (349)
| ++...|.-.|...|+||.+|.|+
T Consensus 161 --------------------------p----e~~kell~~i~~fRDeEleHhdt 184 (217)
T KOG4061|consen 161 --------------------------P----EEHKELLSTITKFRDEELEHHDT 184 (217)
T ss_pred --------------------------c----HhHHHHHHHHHHHhHHHHHhhcc
Confidence 1 34557889999999999999999
No 14
>PRK12482 flagellar motor protein MotA; Provisional
Probab=39.87 E-value=2.1e+02 Score=28.50 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=62.2
Q ss_pred HHhcC-ChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHHHHHHhcccccCCCCCHHHHhhhcCC
Q 018864 173 EELGG-NAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGG 251 (349)
Q Consensus 173 ~~L~~-p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~TYT~~L~di~~~~k~~pAP~iAi~Yw~l~ 251 (349)
-.|.. |+ -+--.+|......||-+ ++.|++-=-+|.++-...|+|.. +-+++++.=-.+..-..|.+|++|=+.
T Consensus 189 ~~L~d~p~-~IG~~iAvALvtTfYGv-~lAn~i~~PiA~kL~~~~~~e~~--~~~~i~~gi~a~~~G~~P~~~ve~~r~- 263 (287)
T PRK12482 189 QSIDGSIA-EIGLKVAAALVGTFLGV-FICYCLMDPLANAMEQEIKKELS--LLECVRTVLVAHVAGKPTLLAVDAGRK- 263 (287)
T ss_pred HhcCCCHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCCcHHHHHHHhc-
Confidence 34444 33 23344566666777765 67888888899999999999886 667777743345667799999999764
Q ss_pred CCcchhhhhhccCCCCCCCCCCCHHHHH
Q 018864 252 DLYLFDEFQTARLPNSRRPKIENLYDVF 279 (349)
Q Consensus 252 dly~fde~qt~~~p~~rrP~~atLrDV~ 279 (349)
..|...||.-+-|-|.+
T Consensus 264 -----------~i~~~~~p~f~e~e~~~ 280 (287)
T PRK12482 264 -----------LLPLDNKPTFATLDSWI 280 (287)
T ss_pred -----------cCCCccCCCHHHHHHHH
Confidence 34666778555554443
No 15
>COG3160 Rsd Regulator of sigma D [Transcription]
Probab=38.99 E-value=80 Score=29.10 Aligned_cols=71 Identities=24% Similarity=0.430 Sum_probs=50.3
Q ss_pred HHhcCChHHHHHHH--HHHHHHHHHHHHHHHHhhch--------------hhhhhhhhhhhhhHHHHHHHHHHHhccccc
Q 018864 173 EELGGNAWWFDRFL--AQHIAVAYYFVTVFMYVISP--------------RMAYHFSECVESHAFETYDKFIKAQGEKLK 236 (349)
Q Consensus 173 ~~L~~p~~~~~R~l--aq~~~~~fy~~~~~~YlvSP--------------r~ahRfvgylEEEAV~TYT~~L~di~~~~k 236 (349)
+..||..-++||+| -|+..+.|+.+ --|-| -+|+.+|.||.+-=++.|.+.+++.++.
T Consensus 10 er~GGs~~lID~WLh~Rk~llvayc~l----~gikp~ke~~~plnakaL~~FCq~LvDYlSaGHF~iYe~i~~k~~~~-- 83 (162)
T COG3160 10 ERVGGSNKLIDRWLHVRKHLLVAYCNL----VGIKPGKESYMPLNAKALDDFCQSLVDYLSAGHFSIYERILHKLEGN-- 83 (162)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHH----hccCccccccCCCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhcc--
Confidence 34567777788887 56666677653 33444 4799999999999999999999997631
Q ss_pred CCCCCHHHHhhhc
Q 018864 237 KMPAPAVAIKYYT 249 (349)
Q Consensus 237 ~~pAP~iAi~Yw~ 249 (349)
.-|+-..|.+-|.
T Consensus 84 g~~~l~la~kI~p 96 (162)
T COG3160 84 GDRQLALAAKIWP 96 (162)
T ss_pred CcHHHHHHHHHHH
Confidence 1144556666665
No 16
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=36.46 E-value=70 Score=29.32 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHhhhhhhHhh
Q 018864 272 IENLYDVFLNIRDDEAEHCKT 292 (349)
Q Consensus 272 ~atLrDV~l~IRaDEa~Hr~v 292 (349)
++.++.+|..|.+||..|...
T Consensus 52 ~~~~rk~~~~la~eE~~H~~~ 72 (176)
T COG1633 52 DEEIRKLFEDLADEEMRHLRK 72 (176)
T ss_pred CHhHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999887
No 17
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=35.66 E-value=58 Score=25.98 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=18.5
Q ss_pred CHHHHHHHHHhhhhhhHhhh
Q 018864 274 NLYDVFLNIRDDEAEHCKTM 293 (349)
Q Consensus 274 tLrDV~l~IRaDEa~Hr~vn 293 (349)
.+.++|..|..||..|.+.-
T Consensus 28 ~~~~~~~~la~eE~~H~~~l 47 (139)
T cd01045 28 ELKKLFEELAEEEKEHAERL 47 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999985
No 18
>PF13030 DUF3891: Protein of unknown function (DUF3891)
Probab=34.63 E-value=2.7e+02 Score=26.34 Aligned_cols=83 Identities=10% Similarity=0.102 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccccchhhhhhhhhhcCchhHHHHHHHHHhhcC
Q 018864 68 PLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFG 147 (349)
Q Consensus 68 p~~~~~~~~~~p~~~~d~~a~~~v~~~r~~fd~~~~~~l~~~~D~l~~~R~~~Rfi~LETVA~VPgmv~~~~~HL~~~~g 147 (349)
..|+|+.+.+.|-++.|--....+...+.++|.+ .+.=||.+.+..+|..++.+
T Consensus 59 ~~P~ln~~~g~P~~F~~~p~~~~~~~~~~gi~~~--------------------------~~~~~yaaLL~S~H~~~ly~ 112 (221)
T PF13030_consen 59 AAPILNDETGAPYDFMDYPLQEKLAFYRRGIDEA--------------------------EQKSPYAALLCSMHYSFLYE 112 (221)
T ss_pred cCCccccccCCccchhhCChhHHHHHHHHHHHHH--------------------------HHcCCHHHHHHHHHHHHHcC
Confidence 4688998889999999988777777777776653 23457778888899988876
Q ss_pred Cccc-cchHHHHHHHHHhHHHHHHHHHHhc
Q 018864 148 WWRR-ADYLKVHFAESWNEMHHLLIMEELG 176 (349)
Q Consensus 148 ~~Rd-~~wI~tlleEAeNErmHLLi~~~L~ 176 (349)
-..+ ..-+...+++.+..+-+|+.-+...
T Consensus 113 ~~~~~~~~~~~Fl~~e~~rQ~~l~~~L~~~ 142 (221)
T PF13030_consen 113 NRTGQSPEVDAFLDEEEQRQERLRAELGID 142 (221)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4442 3457778888888888888777665
No 19
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=34.32 E-value=68 Score=25.67 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=39.5
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHHHHhcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHh
Q 018864 205 SPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRD 284 (349)
Q Consensus 205 SPr~ahRfvgylEEEAV~TYT~~L~di~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRa 284 (349)
++..+.+..-..|..++..|..+.+..+ +.-.+++|..|..
T Consensus 84 ~~~~~l~~a~~~E~~~~~~Y~~~a~~~~---------------------------------------~~~~~~~~~~l~~ 124 (137)
T PF02915_consen 84 NLEEALEMAIKEEKDAYEFYAELARKAP---------------------------------------DPEIRKLFEELAK 124 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT---------------------------------------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------------------------------CHHHHHHHHHHHH
Confidence 5677777777889999999999887763 2246788999999
Q ss_pred hhhhhHhh
Q 018864 285 DEAEHCKT 292 (349)
Q Consensus 285 DEa~Hr~v 292 (349)
||..|.+.
T Consensus 125 ~E~~H~~~ 132 (137)
T PF02915_consen 125 EEKEHEDL 132 (137)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 20
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=28.76 E-value=88 Score=25.03 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=18.2
Q ss_pred CHHHHHHHHHhhhhhhHhhh
Q 018864 274 NLYDVFLNIRDDEAEHCKTM 293 (349)
Q Consensus 274 tLrDV~l~IRaDEa~Hr~vn 293 (349)
-++++|..+..||..|.+..
T Consensus 30 ~~~~~f~~lA~~E~~H~~~~ 49 (137)
T PF02915_consen 30 ELKELFRRLAEEEQEHAKFL 49 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999985
No 21
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=26.98 E-value=3.9e+02 Score=29.85 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=57.9
Q ss_pred HHHHHHhhhhccccchhhhhhhhhhcCch--------hHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHhc
Q 018864 105 SVIMVLDALYRDRDYARFFVLETIARVPY--------FAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG 176 (349)
Q Consensus 105 ~l~~~~D~l~~~R~~~Rfi~LETVA~VPg--------mv~~~~~HL~~~~g~~Rd~~wI~tlleEAeNErmHLLi~~~L~ 176 (349)
......+.+|.++-+-|...++++-.-|- +-..++.|||+.+. |-.++=+---..=+-..-+.|
T Consensus 192 L~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLt--------KP~lDl~l~s~~L~~s~~s~g 263 (728)
T KOG0064|consen 192 LTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLT--------KPVLDLILISFTLLDSATSVG 263 (728)
T ss_pred HHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHhhhcccc
Confidence 34456677888888999999999999885 34568899998774 233332222111112223333
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 018864 177 GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYH 211 (349)
Q Consensus 177 ~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahR 211 (349)
..+.| .+.+++|..-+++=.+||++.+-
T Consensus 264 ~~~~~-------~~~lvv~lTa~iLr~~sP~Fg~L 291 (728)
T KOG0064|consen 264 AAGIT-------LAGLVVYLTAFILRAVSPKFGKL 291 (728)
T ss_pred ccchh-------hhhhHHHHHHHHHHHhCCchhhH
Confidence 33322 44556667778899999998653
No 22
>PRK10467 hydrogenase 2 large subunit; Provisional
Probab=24.30 E-value=3.7e+02 Score=29.26 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=47.8
Q ss_pred hhccccchh-hhhhhhhhcCchhH--HHHHHHHHhhcCCc--cccchHHHHHHHHHhHHHHHHHHHHhcCCh
Q 018864 113 LYRDRDYAR-FFVLETIARVPYFA--FISVLHMYESFGWW--RRADYLKVHFAESWNEMHHLLIMEELGGNA 179 (349)
Q Consensus 113 l~~~R~~~R-fi~LETVA~VPgmv--~~~~~HL~~~~g~~--Rd~~wI~tlleEAeNErmHLLi~~~L~~p~ 179 (349)
+.++|...- ..+.+-|-||=+.+ .++++-+-...|.. +++.+|++++.|+|.-.-||+-|.-+..+.
T Consensus 44 ileGR~p~dal~l~~RICGiC~~aH~~A~~~AlE~a~gi~vP~~A~~iR~l~~e~eri~sHl~hfy~l~~~D 115 (567)
T PRK10467 44 IVKNRDPRDAWMIVQRICGVCTTTHAISSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALD 115 (567)
T ss_pred HHcCCCHHHHHHHhchhceeCHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 355555544 36677777777765 44556666666654 446799999999999999999877777666
No 23
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=20.06 E-value=2.2e+02 Score=27.22 Aligned_cols=59 Identities=10% Similarity=-0.051 Sum_probs=33.9
Q ss_pred cchhhhhhhhhhcCchhHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHhc
Q 018864 118 DYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELG 176 (349)
Q Consensus 118 ~~~Rfi~LETVA~VPgmv~~~~~HL~~~~g~~Rd~~wI~tlleEAeNErmHLLi~~~L~ 176 (349)
++..++-+|...--|++..++-.-+....+........+...||+.+-.|+...+..++
T Consensus 82 ~~~~~i~~E~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~ 140 (304)
T PF11583_consen 82 YLSQGIWFEQGLVNPAFRMLARDRFPSDPDDDAKRYALTEIADEARHSLMFARAINRTG 140 (304)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTT-STTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666778887766766554422221111110111235677788888888888888777
Done!