Query 018865
Match_columns 349
No_of_seqs 216 out of 1661
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 07:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018865.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018865hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 74.6 0.98 7.2E-05 28.9 2.6 24 164-187 18-41 (56)
2 d2dmda2 g.37.1.1 (A:8-33) Zinc 59.3 1.1 8.3E-05 23.5 0.4 15 180-194 2-16 (26)
3 d1vfya_ g.50.1.1 (A:) vps27p p 56.0 1.8 0.00013 28.8 1.2 24 167-190 7-32 (67)
4 d1wfka_ g.50.1.1 (A:) Zinc fin 52.6 3 0.00022 29.3 1.9 24 166-189 10-35 (88)
5 d2dkta2 g.93.1.1 (A:82-137) RI 52.1 1.3 9.2E-05 28.6 -0.3 25 167-191 19-46 (56)
6 d1dvpa2 g.50.1.1 (A:149-220) H 50.6 3.3 0.00024 27.8 1.8 25 166-190 14-40 (72)
7 d1joca1 g.50.1.1 (A:1348-1411) 49.5 3 0.00022 27.3 1.4 24 166-189 9-34 (64)
8 d2adra2 g.37.1.1 (A:131-161) A 48.2 1.7 0.00013 24.1 -0.0 14 180-193 2-15 (31)
9 d2pg3a1 c.26.2.1 (A:1-230) Que 46.5 2.2 0.00016 34.7 0.4 22 168-191 185-206 (230)
10 d1olza3 g.16.2.1 (A:481-536) S 42.4 2 0.00014 27.6 -0.5 23 183-205 6-31 (56)
11 d2c6aa1 g.41.11.1 (A:290-335) 38.6 6.1 0.00044 24.0 1.4 20 166-185 14-33 (46)
12 d1njqa_ g.37.1.3 (A:) SUPERMAN 33.9 5.8 0.00042 23.1 0.7 13 176-188 2-14 (37)
13 d1y02a2 g.50.1.1 (A:20-70) Rif 31.5 6.4 0.00047 24.5 0.7 12 177-188 14-25 (51)
14 d2cr8a1 g.41.11.1 (A:8-48) MDM 31.3 9.8 0.00071 22.4 1.4 20 166-185 5-24 (41)
15 d1r79a_ g.49.1.1 (A:) Diacylgl 29.2 30 0.0022 23.4 4.2 30 161-190 34-67 (84)
16 d1q5wa_ g.41.11.1 (A:) Npl4 {R 22.9 30 0.0022 18.7 2.4 21 166-186 7-27 (31)
17 d1zbdb_ g.50.1.1 (B:) Effector 21.3 15 0.0011 27.0 1.2 24 166-189 49-75 (124)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=74.58 E-value=0.98 Score=28.94 Aligned_cols=24 Identities=29% Similarity=0.711 Sum_probs=21.1
Q ss_pred cceecccCccccCCCCcccccccc
Q 018865 164 RSLTCSYCNVEQPPRAKHCHDCDR 187 (349)
Q Consensus 164 ~~~~C~~C~~~kP~Rs~HC~~C~~ 187 (349)
....|.+|...-|+|+..|+.||.
T Consensus 18 ~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 18 LKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhHHHhhccccCCccccccccCCC
Confidence 347899999999999999998775
No 2
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.30 E-value=1.1 Score=23.47 Aligned_cols=15 Identities=27% Similarity=0.833 Sum_probs=12.6
Q ss_pred ccccccccccccccc
Q 018865 180 KHCHDCDRCVLQFDH 194 (349)
Q Consensus 180 ~HC~~C~~CV~r~DH 194 (349)
|.|..|++|..|-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 679999999988773
No 3
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=56.02 E-value=1.8 Score=28.76 Aligned_cols=24 Identities=25% Similarity=0.692 Sum_probs=17.6
Q ss_pred ecccCccc--cCCCCccccccccccc
Q 018865 167 TCSYCNVE--QPPRAKHCHDCDRCVL 190 (349)
Q Consensus 167 ~C~~C~~~--kP~Rs~HC~~C~~CV~ 190 (349)
-|..|+.. .-.|-|||+.||+-+=
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccccCCCcccCcccccccccCCCEec
Confidence 37788752 4568899999998553
No 4
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=52.58 E-value=3 Score=29.28 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=18.1
Q ss_pred eecccCccc--cCCCCcccccccccc
Q 018865 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (349)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~~CV 189 (349)
..|..|+.. -..|-|||+.||+.+
T Consensus 10 s~C~~C~~~Fs~~~rrhhCr~CG~vf 35 (88)
T d1wfka_ 10 SRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CcCcccCchhccccccccccccChhh
Confidence 568888763 456889999999854
No 5
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=52.07 E-value=1.3 Score=28.62 Aligned_cols=25 Identities=24% Similarity=0.719 Sum_probs=15.8
Q ss_pred ecccCccc---cCCCCcccccccccccc
Q 018865 167 TCSYCNVE---QPPRAKHCHDCDRCVLQ 191 (349)
Q Consensus 167 ~C~~C~~~---kP~Rs~HC~~C~~CV~r 191 (349)
.|..|.+- ....-.||..|+.|+..
T Consensus 19 HC~~CgiCRvG~~~~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 19 HCESCGICRIGPKEDFFHCLKCNLCLTT 46 (56)
T ss_dssp EETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred cCCCCCceeecCCccccccCccccccCc
Confidence 35444443 35567788888888755
No 6
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=50.57 E-value=3.3 Score=27.84 Aligned_cols=25 Identities=32% Similarity=0.794 Sum_probs=18.7
Q ss_pred eecccCccc--cCCCCccccccccccc
Q 018865 166 LTCSYCNVE--QPPRAKHCHDCDRCVL 190 (349)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~~CV~ 190 (349)
..|..|+.. --.|-|||+.||+.+=
T Consensus 14 ~~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 14 RVCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccccCCCcccCccccccccccCCeeC
Confidence 458888763 4578999999998653
No 7
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.51 E-value=3 Score=27.34 Aligned_cols=24 Identities=25% Similarity=0.661 Sum_probs=17.5
Q ss_pred eecccCccc--cCCCCcccccccccc
Q 018865 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (349)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~~CV 189 (349)
.-|..|+.. --.|-|||+.||+.+
T Consensus 9 ~~C~~C~~~F~~~~rrHHCR~CG~v~ 34 (64)
T d1joca1 9 QNCMACGKGFSVTVRRHHCRQCGNIF 34 (64)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCcCCcccCCccccchhhhCCee
Confidence 347778653 346889999999865
No 8
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=48.21 E-value=1.7 Score=24.07 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=12.3
Q ss_pred cccccccccccccc
Q 018865 180 KHCHDCDRCVLQFD 193 (349)
Q Consensus 180 ~HC~~C~~CV~r~D 193 (349)
..|..|+||-.|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 46999999999988
No 9
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=46.50 E-value=2.2 Score=34.73 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=18.2
Q ss_pred cccCccccCCCCcccccccccccc
Q 018865 168 CSYCNVEQPPRAKHCHDCDRCVLQ 191 (349)
Q Consensus 168 C~~C~~~kP~Rs~HC~~C~~CV~r 191 (349)
-.+| ++|.+.+||..|..|++|
T Consensus 185 T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 185 TLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp CCCC--TTSCCTTTTSCSHHHHHH
T ss_pred cCCC--CCCCCCCCCCCCHhHHHH
Confidence 3455 678889999999999998
No 10
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.43 E-value=2 Score=27.63 Aligned_cols=23 Identities=48% Similarity=1.093 Sum_probs=18.6
Q ss_pred ccccccccccccccccc---cccccc
Q 018865 183 HDCDRCVLQFDHHCVWL---GTCVGL 205 (349)
Q Consensus 183 ~~C~~CV~r~DHHC~Wv---~nCIG~ 205 (349)
+.|+.||.-.|-||.|= +.|+-.
T Consensus 6 ~sC~~C~~a~DPyCgW~~~~~~C~~~ 31 (56)
T d1olza3 6 GTCEDCVLARDPYCAWSPPTATCVAL 31 (56)
T ss_dssp CSHHHHHHTTCTTEEEETTTTEEEET
T ss_pred ccHHHHHcCCCCcCcccCCCCCeecC
Confidence 35889999999999994 668754
No 11
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.62 E-value=6.1 Score=23.99 Aligned_cols=20 Identities=40% Similarity=1.097 Sum_probs=17.7
Q ss_pred eecccCccccCCCCcccccc
Q 018865 166 LTCSYCNVEQPPRAKHCHDC 185 (349)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C 185 (349)
.-|.+|+..-||--.||..|
T Consensus 14 WkC~~C~~~N~Pl~ryC~rC 33 (46)
T d2c6aa1 14 WKCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp EECTTTCCEECSSCSSCTTT
T ss_pred ccCccccccCCcchhHhHHH
Confidence 67999999999999998876
No 12
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=33.85 E-value=5.8 Score=23.11 Aligned_cols=13 Identities=46% Similarity=1.002 Sum_probs=10.8
Q ss_pred CCCCccccccccc
Q 018865 176 PPRAKHCHDCDRC 188 (349)
Q Consensus 176 P~Rs~HC~~C~~C 188 (349)
|+|.+-|+.|++-
T Consensus 2 p~r~~~C~~C~k~ 14 (37)
T d1njqa_ 2 PPRSYTCSFCKRE 14 (37)
T ss_dssp CSSSEECTTTCCE
T ss_pred CCCccCCCCCCCc
Confidence 7888899998874
No 13
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.51 E-value=6.4 Score=24.50 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=8.5
Q ss_pred CCCccccccccc
Q 018865 177 PRAKHCHDCDRC 188 (349)
Q Consensus 177 ~Rs~HC~~C~~C 188 (349)
.|-|||+.||+-
T Consensus 14 ~rkhhCr~CG~~ 25 (51)
T d1y02a2 14 ARKQTCLDCKKN 25 (51)
T ss_dssp GGCEECTTTCCE
T ss_pred ccCcccccCCcc
Confidence 466888887773
No 14
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.25 E-value=9.8 Score=22.42 Aligned_cols=20 Identities=25% Similarity=0.791 Sum_probs=16.2
Q ss_pred eecccCccccCCCCcccccc
Q 018865 166 LTCSYCNVEQPPRAKHCHDC 185 (349)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C 185 (349)
.-|.+|+..-||--.||..|
T Consensus 5 WkC~~C~~~N~Pl~ryC~rC 24 (41)
T d2cr8a1 5 WQCTECKKFNSPSKRYCFRC 24 (41)
T ss_dssp EECSSSCCEECSSCCBCTTT
T ss_pred eecCcccccCCcchhHHHHH
Confidence 56888888888888888766
No 15
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.24 E-value=30 Score=23.37 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=20.6
Q ss_pred CcccceecccCccccC----CCCccccccccccc
Q 018865 161 TSIRSLTCSYCNVEQP----PRAKHCHDCDRCVL 190 (349)
Q Consensus 161 ~~~~~~~C~~C~~~kP----~Rs~HC~~C~~CV~ 190 (349)
+.....+|..|+..-- ....+|..|+..+-
T Consensus 34 n~~~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H 67 (84)
T d1r79a_ 34 NLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVH 67 (84)
T ss_dssp CCCTTCBCSSSCCBCCCTTTCCCEEESSSCCEEC
T ss_pred CCCCCCCCcccCcccCCccccCcEecCcCCchhh
Confidence 3345578999986542 24789999987553
No 16
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.92 E-value=30 Score=18.67 Aligned_cols=21 Identities=29% Similarity=0.841 Sum_probs=18.2
Q ss_pred eecccCccccCCCCccccccc
Q 018865 166 LTCSYCNVEQPPRAKHCHDCD 186 (349)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~ 186 (349)
+-|..|--.-.+.+-||.-|.
T Consensus 7 WsC~HCTf~N~pgtd~CeMC~ 27 (31)
T d1q5wa_ 7 WACQHCTFMNQPGTGHCEMCS 27 (31)
T ss_dssp EECSSSCCEECTTCSBCTTTC
T ss_pred eEeeeeeeecCCCCCcchhhc
Confidence 679999999999999998775
No 17
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.34 E-value=15 Score=26.99 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=17.6
Q ss_pred eecccCccc-cC--CCCcccccccccc
Q 018865 166 LTCSYCNVE-QP--PRAKHCHDCDRCV 189 (349)
Q Consensus 166 ~~C~~C~~~-kP--~Rs~HC~~C~~CV 189 (349)
.-|..|+.. .. .|.|||..|++-|
T Consensus 49 ~~C~~C~~~f~~~~~~~~~C~~C~~~~ 75 (124)
T d1zbdb_ 49 NRCILCGEQLGMLGSASVVCEDCKKNV 75 (124)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEE
T ss_pred CcCcccCCcccCCCCCCCcCccCCccc
Confidence 569999765 33 5778999888754
Done!