BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018866
         (349 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P41777|NOLC1_RAT Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus
           GN=Nolc1 PE=1 SV=1
          Length = 704

 Score = 85.9 bits (211), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 55/74 (74%), Gaps = 1/74 (1%)

Query: 271 FQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYR 330
           F+RV+ +E+E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYR
Sbjct: 630 FRRVREEEIEV-DSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYR 688

Query: 331 GGQIDLQSHSVKFN 344
           GG I +Q +SVKF+
Sbjct: 689 GGSISVQVNSVKFD 702


>sp|Q14978|NOLC1_HUMAN Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens GN=NOLC1
           PE=1 SV=2
          Length = 699

 Score = 84.7 bits (208), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 55/74 (74%), Gaps = 1/74 (1%)

Query: 271 FQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYR 330
           F+RV+ +E+E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYR
Sbjct: 625 FRRVREEEIEV-DSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYR 683

Query: 331 GGQIDLQSHSVKFN 344
           GG I +Q +S+KF+
Sbjct: 684 GGSISVQVNSIKFD 697


>sp|P32583|SRP40_YEAST Suppressor protein SRP40 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=SRP40 PE=1 SV=2
          Length = 406

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 269 KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGS 328
           K F RV   ++ F    L DN+Y    GA   +G KA E LG+VRG+DF   K K KRGS
Sbjct: 333 KHFSRVDRSKINFEAWELTDNTY---KGAAGTWGEKANEKLGRVRGKDFTKNKNKMKRGS 389

Query: 329 YRGGQIDLQSHSVKF 343
           YRGG I L+S S KF
Sbjct: 390 YRGGSITLESGSYKF 404


>sp|Q9P785|YNY5_SCHPO LisH domain-containing protein C1711.05 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=SPBC1711.05 PE=4 SV=1
          Length = 451

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 270 AFQRV-KVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGS 328
            F RV    + +F    L+DNS+  +D     YG  A   L   RG+ FR EK KKKRGS
Sbjct: 381 PFTRVGDPSQWDFASPALRDNSFNFEDD----YGTLANRDLIVTRGKGFRQEKNKKKRGS 436

Query: 329 YRGGQIDLQSHSVKF 343
           YRGG+I+ +  S KF
Sbjct: 437 YRGGRINTEVRSFKF 451


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.300    0.120    0.312 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,854,675
Number of Sequences: 539616
Number of extensions: 5728519
Number of successful extensions: 60561
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 3753
Number of HSP's that attempted gapping in prelim test: 31153
Number of HSP's gapped (non-prelim): 17407
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 62 (28.5 bits)