Query 018866
Match_columns 349
No_of_seqs 118 out of 166
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 07:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrt_A Integron cassette prote 73.2 1.6 5.4E-05 39.2 2.3 25 8-47 69-93 (192)
2 1s4x_A Integrin beta-3; cell a 22.8 16 0.00054 28.0 -0.3 15 1-15 11-25 (67)
3 2knc_B Integrin beta-3; transm 20.5 39 0.0014 26.1 1.5 14 2-15 24-37 (79)
4 2k9j_B Integrin beta-3; transm 16.1 61 0.0021 22.6 1.5 13 2-14 23-35 (43)
5 2kv9_B Integrin beta-3; platel 14.7 58 0.002 25.5 1.2 11 4-14 22-32 (75)
6 1wxr_A Haemoglobin protease; h 11.1 74 0.0025 35.0 1.1 17 329-345 440-456 (1048)
7 3sze_A Serine protease ESPP; p 10.3 83 0.0028 34.4 1.1 17 329-345 420-436 (968)
8 3v2d_U 50S ribosomal protein L 10.2 1E+02 0.0034 25.9 1.4 11 6-16 59-69 (118)
9 3r8s_Q 50S ribosomal protein L 9.8 1.1E+02 0.0036 25.7 1.4 11 6-16 58-68 (117)
10 2zjr_N 50S ribosomal protein L 9.2 1.2E+02 0.004 25.5 1.4 11 6-16 59-69 (118)
No 1
>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome, structural genomics, PSI-2 protein structure initiative; 2.30A {Vibrio paracholerae}
Probab=73.24 E-value=1.6 Score=39.18 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=20.9
Q ss_pred HHHHHhhhhhhhcccccCCCCccchhHHHhhhHHHhhhhh
Q 018866 8 WIWRICAASILRLDSQKDGDSKRGKEAESAAGVETVSKKK 47 (349)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~s~~~~e~~~~~~~et~sk~~ 47 (349)
-|||+|..||. -+|.+|||--.|=.
T Consensus 69 ciwRLCf~SIV---------------iNCrKYVEln~KYg 93 (192)
T 3jrt_A 69 CIWRLCVYSIV---------------INCRKYVELNQKYG 93 (192)
T ss_dssp HHHHHHHHHHH---------------HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH---------------HhHHHHHHHHHHHH
Confidence 59999999997 48999999876543
No 2
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=22.80 E-value=16 Score=28.01 Aligned_cols=15 Identities=7% Similarity=-0.328 Sum_probs=3.6
Q ss_pred CchhhHHHHHHHhhh
Q 018866 1 MISVIALWIWRICAA 15 (349)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (349)
+|.+|+|.||++|.-
T Consensus 11 liGl~lLliwKll~~ 25 (67)
T 1s4x_A 11 SGLVPRGSHMKLLIT 25 (67)
T ss_dssp ----------CHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 477888999999853
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.53 E-value=39 Score=26.10 Aligned_cols=14 Identities=36% Similarity=0.788 Sum_probs=10.3
Q ss_pred chhhHHHHHHHhhh
Q 018866 2 ISVIALWIWRICAA 15 (349)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (349)
|.+|+|.||++|.-
T Consensus 24 iGllllliwk~~~~ 37 (79)
T 2knc_B 24 IGLAALLIWKLLIT 37 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677888999853
No 4
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=16.09 E-value=61 Score=22.57 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=10.0
Q ss_pred chhhHHHHHHHhh
Q 018866 2 ISVIALWIWRICA 14 (349)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (349)
|.++.|.+|++|.
T Consensus 23 iGl~lLliwk~~~ 35 (43)
T 2k9j_B 23 IGLAALLIWKLLI 35 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567789999985
No 5
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=14.68 E-value=58 Score=25.53 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=8.7
Q ss_pred hhHHHHHHHhh
Q 018866 4 VIALWIWRICA 14 (349)
Q Consensus 4 ~~~~~~~~~~~ 14 (349)
+|+|.||++|.
T Consensus 22 ~~~LliwKll~ 32 (75)
T 2kv9_B 22 SPECLIWKLLI 32 (75)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57888888884
No 6
>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A
Probab=11.07 E-value=74 Score=34.96 Aligned_cols=17 Identities=41% Similarity=0.938 Sum_probs=15.6
Q ss_pred ccCceeecccceeeCCC
Q 018866 329 YRGGQIDLQSHSVKFNY 345 (349)
Q Consensus 329 YRGG~ID~svnSIKFdD 345 (349)
||||.+|+..|++-|..
T Consensus 440 ~RGGrLDLNGn~ltF~~ 456 (1048)
T 1wxr_A 440 YRGGTLDVNGNSLTFHQ 456 (1048)
T ss_dssp TTCEEEECTTCCEEESC
T ss_pred cCCceeccCCCcchhhh
Confidence 89999999999999963
No 7
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A {Escherichia coli O157}
Probab=10.25 E-value=83 Score=34.42 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=15.4
Q ss_pred ccCceeecccceeeCCC
Q 018866 329 YRGGQIDLQSHSVKFNY 345 (349)
Q Consensus 329 YRGG~ID~svnSIKFdD 345 (349)
||||.+|++.|++-|..
T Consensus 420 ~RGG~LDLNGn~ltF~~ 436 (968)
T 3sze_A 420 KNGGTLDLNGYNQSFNK 436 (968)
T ss_dssp TTCEEEECTTCCEEESC
T ss_pred cCCccccccCccceehh
Confidence 89999999999999963
No 8
>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ...
Probab=10.23 E-value=1e+02 Score=25.90 Aligned_cols=11 Identities=64% Similarity=0.933 Sum_probs=9.8
Q ss_pred HHHHHHHhhhh
Q 018866 6 ALWIWRICAAS 16 (349)
Q Consensus 6 ~~~~~~~~~~~ 16 (349)
.|||-||-||+
T Consensus 59 ~LWI~RINAa~ 69 (118)
T 3v2d_U 59 RLWIVRINAAC 69 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 59999999986
No 9
>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ...
Probab=9.82 E-value=1.1e+02 Score=25.72 Aligned_cols=11 Identities=64% Similarity=0.945 Sum_probs=9.8
Q ss_pred HHHHHHHhhhh
Q 018866 6 ALWIWRICAAS 16 (349)
Q Consensus 6 ~~~~~~~~~~~ 16 (349)
.|||-||-||+
T Consensus 58 ~LWI~RINAa~ 68 (117)
T 3r8s_Q 58 QLWIARINAAA 68 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 59999999986
No 10
>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R ...
Probab=9.18 E-value=1.2e+02 Score=25.47 Aligned_cols=11 Identities=55% Similarity=0.903 Sum_probs=9.7
Q ss_pred HHHHHHHhhhh
Q 018866 6 ALWIWRICAAS 16 (349)
Q Consensus 6 ~~~~~~~~~~~ 16 (349)
.|||-||-||+
T Consensus 59 ~LWI~RINAa~ 69 (118)
T 2zjr_N 59 RLWIQRINAGA 69 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 69999999886
Done!