Query 018866
Match_columns 349
No_of_seqs 118 out of 166
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 07:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018866.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018866hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2in1a1 d.20.1.4 (A:3-164) Ufm 12.6 25 0.0018 29.1 0.5 12 328-339 107-118 (162)
2 d2j01u1 a.144.2.1 (U:2-118) Ri 7.6 69 0.005 24.8 1.4 11 6-16 58-68 (117)
3 d2zjrn1 a.144.2.1 (N:2-118) Ri 7.5 71 0.0051 24.8 1.4 12 6-17 58-69 (117)
4 d3bz7a1 b.34.3.1 (A:34-79) Myo 6.7 81 0.0059 21.0 1.2 24 324-347 9-33 (46)
5 d1gwma_ b.18.1.19 (A:) Non-cat 5.3 1E+02 0.0073 24.9 1.1 16 323-338 52-67 (153)
6 d2pstx1 d.100.2.1 (X:8-68) Unc 3.2 2.1E+02 0.016 19.8 1.3 12 32-43 36-47 (61)
7 d1eysh2 f.23.10.1 (H:7-43) Pho 3.0 3.4E+02 0.025 17.3 2.1 18 4-21 10-27 (37)
8 d1yt3a1 a.60.8.3 (A:194-294) R 2.6 2.6E+02 0.019 19.2 1.3 14 4-17 24-37 (101)
9 d1w9sa_ b.18.1.10 (A:) Hypothe 2.6 2.2E+02 0.016 20.5 0.8 12 268-279 3-14 (134)
10 d2gyco1 a.144.2.1 (O:2-116) Ri 2.5 70 0.0051 24.6 -2.2 11 6-16 57-67 (115)
No 1
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.62 E-value=25 Score=29.08 Aligned_cols=12 Identities=58% Similarity=1.030 Sum_probs=10.1
Q ss_pred cccCceeecccc
Q 018866 328 SYRGGQIDLQSH 339 (349)
Q Consensus 328 SYRGG~ID~svn 339 (349)
-||||.|.+..|
T Consensus 107 MYRGGkIClt~H 118 (162)
T d2in1a1 107 MYRGGKICLTDH 118 (162)
T ss_dssp SCGGGBCCCCTT
T ss_pred hhcCceeecccc
Confidence 499999998865
No 2
>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus thermophilus [TaxId: 274]}
Probab=7.64 E-value=69 Score=24.76 Aligned_cols=11 Identities=64% Similarity=0.933 Sum_probs=9.6
Q ss_pred HHHHHHHhhhh
Q 018866 6 ALWIWRICAAS 16 (349)
Q Consensus 6 ~~~~~~~~~~~ 16 (349)
.|||-||-||.
T Consensus 58 ~LWI~RINAa~ 68 (117)
T d2j01u1 58 RLWIVRINAAC 68 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 59999999885
No 3
>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus radiodurans [TaxId: 1299]}
Probab=7.53 E-value=71 Score=24.75 Aligned_cols=12 Identities=50% Similarity=0.761 Sum_probs=10.1
Q ss_pred HHHHHHHhhhhh
Q 018866 6 ALWIWRICAASI 17 (349)
Q Consensus 6 ~~~~~~~~~~~~ 17 (349)
.|||-||-||.-
T Consensus 58 ~LWI~RINAa~r 69 (117)
T d2zjrn1 58 RLWIQRINAGAR 69 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 599999998863
No 4
>d3bz7a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=6.74 E-value=81 Score=20.96 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=18.5
Q ss_pred cccccccCceeecc-cceeeCCCCC
Q 018866 324 KKRGSYRGGQIDLQ-SHSVKFNYSD 347 (349)
Q Consensus 324 KKRGSYRGG~ID~s-vnSIKFdDSD 347 (349)
|-|-||-.|.|-.. +.||.|..-|
T Consensus 9 kerdsyecgeivsetsdsftfktvd 33 (46)
T d3bz7a1 9 KERDSYECGEIVSETSDSFTFKTVD 33 (46)
T ss_dssp TCTTCCEEEEEEEECSSEEEEECCC
T ss_pred cccccchhcceeecccCceEEEecc
Confidence 57899999999654 7899886543
No 5
>d1gwma_ b.18.1.19 (A:) Non-catalytic protein 1, Ncp1 {Piromyces equi [TaxId: 99929]}
Probab=5.28 E-value=1e+02 Score=24.87 Aligned_cols=16 Identities=38% Similarity=0.885 Sum_probs=12.3
Q ss_pred ccccccccCceeeccc
Q 018866 323 KKKRGSYRGGQIDLQS 338 (349)
Q Consensus 323 KKKRGSYRGG~ID~sv 338 (349)
|.-.|+||||.|-+++
T Consensus 52 K~~~~~~rGG~i~~~~ 67 (153)
T d1gwma_ 52 KRNSGSFRGGSLRFDM 67 (153)
T ss_dssp EESSCCBCSSEEEEEE
T ss_pred eccCCCccCceEEEEE
Confidence 4467999999997654
No 6
>d2pstx1 d.100.2.1 (X:8-68) Uncharacterized protein PA2412 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.17 E-value=2.1e+02 Score=19.76 Aligned_cols=12 Identities=25% Similarity=0.243 Sum_probs=9.7
Q ss_pred hhHHHhhhHHHh
Q 018866 32 KEAESAAGVETV 43 (349)
Q Consensus 32 ~e~~~~~~~et~ 43 (349)
--+.|++|||.+
T Consensus 36 ~r~~Cl~yIe~~ 47 (61)
T d2pstx1 36 LKKDCLAYIEEV 47 (61)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 457899999975
No 7
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=3.04 E-value=3.4e+02 Score=17.31 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=7.4
Q ss_pred hhHHHHHHHhhhhhhhcc
Q 018866 4 VIALWIWRICAASILRLD 21 (349)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (349)
+.++||+-+...-.|+..
T Consensus 10 ly~Fw~FFagLi~YL~rE 27 (37)
T d1eysh2 10 IWAFWLFFFGLIIYLRRE 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344454444333334433
No 8
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=2.63 E-value=2.6e+02 Score=19.22 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=9.5
Q ss_pred hhHHHHHHHhhhhh
Q 018866 4 VIALWIWRICAASI 17 (349)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (349)
+-+||.||=-.|.-
T Consensus 24 l~~L~~WRe~~A~~ 37 (101)
T d1yt3a1 24 LQLLADWRLRKARE 37 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55789998655543
No 9
>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]}
Probab=2.59 E-value=2.2e+02 Score=20.52 Aligned_cols=12 Identities=8% Similarity=0.479 Sum_probs=9.7
Q ss_pred CCCCccccCCce
Q 018866 268 VKAFQRVKVDEV 279 (349)
Q Consensus 268 n~PFqRV~~eev 279 (349)
+.||+||.+|..
T Consensus 3 rdp~~kiEAE~~ 14 (134)
T d1w9sa_ 3 KNPYERIQAEAY 14 (134)
T ss_dssp BCTTSCEETTCC
T ss_pred CCccccEeeeec
Confidence 479999998864
No 10
>d2gyco1 a.144.2.1 (O:2-116) Ribosomal protein L20 {Escherichia coli [TaxId: 562]}
Probab=2.51 E-value=70 Score=24.61 Aligned_cols=11 Identities=64% Similarity=0.945 Sum_probs=7.9
Q ss_pred HHHHHHHhhhh
Q 018866 6 ALWIWRICAAS 16 (349)
Q Consensus 6 ~~~~~~~~~~~ 16 (349)
.|||-||-||+
T Consensus 57 ~LWI~RINAA~ 67 (115)
T d2gyco1 57 QLWIARINAAA 67 (115)
T ss_dssp GSSSSSHHHHS
T ss_pred HHHHHHHHHHH
Confidence 47888887765
Done!