Query 018867
Match_columns 349
No_of_seqs 184 out of 458
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 07:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_O 26S proteasome regulato 100.0 1.3E-41 4.5E-46 335.5 13.0 315 16-347 7-354 (393)
2 3chm_A COP9 signalosome comple 99.9 9.9E-28 3.4E-32 209.6 8.7 113 221-342 24-141 (169)
3 3txn_A 26S proteasome regulato 99.3 1.2E-09 4.1E-14 107.2 27.8 295 40-342 21-346 (394)
4 4b4t_Q 26S proteasome regulato 98.4 0.00012 4.2E-09 69.8 25.2 293 45-340 63-384 (434)
5 4b4t_R RPN7, 26S proteasome re 98.2 1.9E-05 6.3E-10 78.1 15.7 208 119-332 151-365 (429)
6 4b4t_P 26S proteasome regulato 98.1 0.00016 5.4E-09 71.8 18.4 193 133-332 174-377 (445)
7 3t5x_A PCI domain-containing p 97.9 9.5E-05 3.2E-09 65.8 12.2 158 172-344 9-179 (203)
8 3t5v_B Nuclear mRNA export pro 97.7 0.006 2.1E-07 60.6 22.6 220 115-344 142-415 (455)
9 4b4t_S RPN3, 26S proteasome re 97.1 0.02 6.8E-07 57.6 17.8 197 134-343 229-433 (523)
10 4b0z_A RPN12, 26S proteasome r 94.7 0.39 1.3E-05 43.0 12.4 174 150-330 21-206 (229)
11 3u3w_A Transcriptional activat 80.3 30 0.001 30.4 18.8 176 5-206 37-224 (293)
12 2qfc_A PLCR protein; TPR, HTH, 78.0 35 0.0012 29.9 15.9 176 6-207 38-225 (293)
13 4b4t_T 26S proteasome regulato 63.9 8.6 0.00029 35.1 5.3 149 176-330 58-215 (274)
14 1oyi_A Double-stranded RNA-bin 50.0 12 0.00042 27.9 3.1 43 296-343 17-61 (82)
15 2k6x_A Sigma-A, RNA polymerase 45.6 21 0.00072 25.5 3.7 36 303-339 13-50 (72)
16 3ulq_A Response regulator aspa 43.0 1.8E+02 0.0063 26.0 17.8 128 78-207 225-368 (383)
17 4b4t_P 26S proteasome regulato 40.6 2.5E+02 0.0086 26.8 13.1 109 93-203 90-202 (445)
18 4b4t_Q 26S proteasome regulato 38.8 2.2E+02 0.0075 25.7 17.6 162 40-205 7-202 (434)
19 1qgp_A Protein (double strande 36.3 38 0.0013 24.4 3.9 44 299-343 17-62 (77)
20 3q15_A PSP28, response regulat 35.9 2.4E+02 0.0082 25.2 16.2 33 173-206 332-364 (378)
21 2wpv_A GET4, UPF0363 protein Y 35.6 2.6E+02 0.009 25.6 19.5 115 36-151 12-128 (312)
22 2vn2_A DNAD, chromosome replic 26.0 1E+02 0.0036 24.1 5.3 54 286-342 26-81 (128)
23 3k69_A Putative transcription 22.7 93 0.0032 25.6 4.5 44 301-344 15-60 (162)
24 3bqo_A Telomeric repeat-bindin 22.6 1.2E+02 0.004 26.5 5.1 58 260-318 27-86 (211)
25 1ylf_A RRF2 family protein; st 21.7 73 0.0025 25.7 3.6 44 301-344 17-62 (149)
26 1xd7_A YWNA; structural genomi 21.6 80 0.0027 25.3 3.8 44 299-344 10-55 (145)
27 2p7v_B Sigma-70, RNA polymeras 21.5 35 0.0012 23.4 1.4 20 313-332 24-43 (68)
28 1puo_A Major allergen I polype 21.4 3.5E+02 0.012 22.4 8.3 99 165-287 28-129 (170)
29 3ro2_A PINS homolog, G-protein 21.4 3.6E+02 0.012 22.5 16.6 72 135-208 262-333 (338)
30 2heo_A Z-DNA binding protein 1 20.4 63 0.0022 22.3 2.6 43 298-343 12-56 (67)
31 3bu8_A Telomeric repeat-bindin 20.3 1.3E+02 0.0044 26.6 5.0 49 260-309 21-70 (235)
No 1
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-41 Score=335.48 Aligned_cols=315 Identities=13% Similarity=0.143 Sum_probs=250.7
Q ss_pred HHHHHhHhhhhcCCCcccchhHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHhhccC-ChhhHHHHHHHHHHHh-cCCCCh
Q 018867 16 VVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKV-SDKDLECIFTVICNLV-TKPESL 93 (349)
Q Consensus 16 ~~~~~~~~~~~~~~~~~a~~e~~~~~~~~e~l~~~klwhqLt~~ll~~~~~~f~~~-~~ke~E~~~n~li~l~-~~~~~~ 93 (349)
|-.+++.+-. +++|++++.|.+++++|++|+|||||.+|.. +|... .......+|+.||.-+ .++ ||
T Consensus 7 i~~~l~~~~~------~~~~~l~~~~~~le~~~~~kLWhqlt~~L~~----~~~~~~~~~~~~~ly~~fi~~f~~ki-n~ 75 (393)
T 4b4t_O 7 IDTILSTLRM------EADPSLHPLFEQFEKFYEEKLWFQLSESLTK----FFDDAKSTPLRLRLYDNFVSKFYDKI-NQ 75 (393)
T ss_dssp HHHHHHHHHC------SSCSSCCSSHHHHHHHHCCSSCCSCCCTTHH----HHCCCSSCCCCHHHHHHHHHHHHHHS-CS
T ss_pred HHHHHHHHHh------cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHhChhcchHHHHHHHHHHHHHHHhc-CH
Confidence 4455555543 4678899999999999999999999988887 55432 2234478999998444 477 77
Q ss_pred hHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhccC---C---------chhHHHH--HHHHHHHHcCCCcchhhhhH
Q 018867 94 DEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLEN---P---------YSRFFVY--MKALNLAVNGKVTEHIIPSF 159 (349)
Q Consensus 94 ~~~~~lv~~l~~~v~~~~~~~~~~rl~~L~~Lfn~l~~---~---------~~r~~v~--~~il~la~~~~~~~~l~~~l 159 (349)
+++++.++. +..+ ..++..++.+|..++..+.. . ..++.+| +.+..+--..|+++.++..+
T Consensus 76 ---L~lv~~~~~-~~~~-~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l 150 (393)
T 4b4t_O 76 ---LSVVKYLLA-SLKD-SKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLL 150 (393)
T ss_dssp ---HHHHHTTHH-HHHH-TTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ---HHHHHHHHH-HHhh-cCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 778875544 3344 35688899999998776521 1 1233444 34444445678999999999
Q ss_pred HhHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeee
Q 018867 160 KKIDSFLKEW-NIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQ 238 (349)
Q Consensus 160 ~~~~~~L~~w-~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~ 238 (349)
++++..+++. ++++.+|.+||.+.+.|++. +++++.+|++.+.||+|++..+..+.++++..|+.+++.||.+|++|+
T Consensus 151 ~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~-~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~ 229 (393)
T 4b4t_O 151 DDLEKTLDKKDSIPLRITNSFYSTNSQYFKF-KNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYN 229 (393)
T ss_dssp HHHHHHHHHSCCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCS
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999998 67889999999999999998 599999999999999999875444457888999999999999999999
Q ss_pred ec-CCCChhhhhcccCCCchhHHHHHHHHhcCChhhHHHHHhhChhhhhhcCCChHHHHHHHHHHHHhhhh-hcCCCCcC
Q 018867 239 CD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLG-SNESGQIP 316 (349)
Q Consensus 239 f~-LL~~p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La-~~~~r~is 316 (349)
|| ||.+|.+++|++++++.|+++||++|+.||+.+|.++.+.|.+.++.++.+...+.+|||+++|++|+ +++.|.||
T Consensus 230 f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~ 309 (393)
T 4b4t_O 230 FGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLS 309 (393)
T ss_dssp THHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEE
T ss_pred hHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCc
Confidence 98 99999999998877899999999999999999999987777665555666688999999999999999 45688999
Q ss_pred hHHHHhhcCCCCchHH--H------------HHHhhccceeEEEE
Q 018867 317 YGLIKDTLQVYFLTFL--L------------LDLWYGLFVVNVLQ 347 (349)
Q Consensus 317 y~~Ia~~l~i~~~eve--~------------id~i~~~~~~~~~~ 347 (349)
|++|+++|+|+.+||| + ||++.+.+.|+|||
T Consensus 310 f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~ 354 (393)
T 4b4t_O 310 FEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQ 354 (393)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC----
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEecc
Confidence 9999999999999876 4 45555556678876
No 2
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=99.94 E-value=9.9e-28 Score=209.59 Aligned_cols=113 Identities=24% Similarity=0.384 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCCCeeeec-CCCChhhhhcccCCCchhHHHHHHHHhcCChhhHHHHHhhChhhhhhcCCChHHHHHHH
Q 018867 221 EEAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKM 299 (349)
Q Consensus 221 ~~A~~li~~aL~~p~iy~f~-LL~~p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~~~~l~~Ki 299 (349)
+.|++++++||.+|++|+|| ||.||+|++|+++ +|+|+++||++|++|++.+|.++.+++|+ ++ +.+.+||
T Consensus 24 ~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~-~~~~~~~LL~iF~~G~~~~y~~~~~~~p~------L~-~~~~~Kl 95 (169)
T 3chm_A 24 EALGPLIIEATSHPSLFAFSEILALPNVAQLEGT-TDSVYLDLLRLFAHGTWGDYKCNATRLPH------LS-PDQILKL 95 (169)
T ss_dssp GGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTS-TTHHHHHHHHHHHHCCHHHHHHHGGGSCC------CC-HHHHHHH
T ss_pred HHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCC-ChhHHHHHHHHHhcCCHHHHHHhHHhCcc------hH-HHHHHHH
Confidence 46999999999999999998 9999999999886 69999999999999999999998766663 44 8899999
Q ss_pred HHHHHhhhhhcCCCCcChHHHHhhcCCC-CchH--HHH-HHhhccce
Q 018867 300 RLMSLVDLGSNESGQIPYGLIKDTLQVY-FLTF--LLL-DLWYGLFV 342 (349)
Q Consensus 300 rLLtL~~La~~~~r~isy~~Ia~~l~i~-~~ev--e~i-d~i~~~~~ 342 (349)
|+|||++||++ +|+|||++|+++|+|+ .+|| |+| +|||+|+|
T Consensus 96 rlLtL~sLa~~-~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI 141 (169)
T 3chm_A 96 KQLTVLTLAES-NKVLPYDTLMVELDVSNVRELEDFLINECMYAGIV 141 (169)
T ss_dssp HHHHHHHHHHH-CSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSE
T ss_pred HHHHHHHHHHh-CCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCe
Confidence 99999999977 8999999999999999 6665 679 99998875
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.32 E-value=1.2e-09 Score=107.18 Aligned_cols=295 Identities=9% Similarity=-0.014 Sum_probs=208.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhHHhhccCChhhHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHhhcCCCCChhhH
Q 018867 40 LCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESL-DEVHEMTKLISGKIIQQPNDKPAMR 118 (349)
Q Consensus 40 ~~~~~e~l~~~klwhqLt~~ll~~~~~~f~~~~~ke~E~~~n~li~l~~~~~~~-~~~~~lv~~l~~~v~~~~~~~~~~r 118 (349)
-..++-++|.+..-.+-+..++...-++|...+-.--+.+...++..+..+++. +....+|....+-..+ ..+--+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ--EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH--TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 355566666665555555566777888888777656677778888777776543 2222333322221111 1233333
Q ss_pred --------------------HHHHHHHHhhccC---CchhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHH
Q 018867 119 --------------------LKILFNLYNLLEN---PYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKD 175 (349)
Q Consensus 119 --------------------l~~L~~Lfn~l~~---~~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~ 175 (349)
++.+..+...+.. +..-..|++...++....++...++..+.......+....++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2233333333322 23457788888888888899999999998888888766678888
Q ss_pred HHHHHHHHHHHHH-HhccChHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeeeec-CCCChhhhhcccC
Q 018867 176 KRALFLGIANVLK-ESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD-LLDMPAIGQLEND 253 (349)
Q Consensus 176 ~~~~y~~~a~~l~-~~~~~~~~~y~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~f~-LL~~p~v~~L~~~ 253 (349)
++.+.....-++- . .+++..++...+....+|+... ..++...+.-+++.++.+.+.++++ ++.+|..... .+
T Consensus 179 ~a~i~~~~Gi~~l~~-~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~~ 253 (394)
T 3txn_A 179 QGALDLQSGILHAAD-ERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-SG 253 (394)
T ss_dssp HHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-CS
T ss_pred HHHHHHHhhHHHHHh-ccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc-CC
Confidence 8888777777777 5 4899999999998888887432 3567788888999999999899997 8888876555 34
Q ss_pred CCchhHHHHHHHHhcCChhhHHHHHhhChhhhh-hc--CCChHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCch
Q 018867 254 AKYASVYQLLKIFLTQRLDGYLEFQAGNSALLK-SY--GLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLT 330 (349)
Q Consensus 254 ~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~-~~--~l~~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~e 330 (349)
|+..|+.+|+.+|..|++.+|......+...+. +. .-....+.++||..+|..+.. |-+.|+++.||+.+++++++
T Consensus 254 pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~-pYsrIsl~~iA~~l~ls~~e 332 (394)
T 3txn_A 254 RDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIE-PYSRVQVAHVAESIQLPMPQ 332 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCSEEEHHHHHHHHTCCHHH
T ss_pred ccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhH-hhceeeHHHHHHHHCcCHHH
Confidence 578899999999999999999988877643221 10 111478999999999999985 46789999999999999998
Q ss_pred HH--HHHHhhccce
Q 018867 331 FL--LLDLWYGLFV 342 (349)
Q Consensus 331 ve--~id~i~~~~~ 342 (349)
+| +...|..|.+
T Consensus 333 vE~~L~~lI~dg~I 346 (394)
T 3txn_A 333 VEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHCCCe
Confidence 75 5666666543
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=0.00012 Score=69.77 Aligned_cols=293 Identities=9% Similarity=0.013 Sum_probs=180.9
Q ss_pred HHHHHcCCHHHHHHHHHHhhHHhhccCChhhHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHhhcCCCCC---------
Q 018867 45 QESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTK-PESLDEVHEMTKLISGKIIQQPNDK--------- 114 (349)
Q Consensus 45 e~l~~~klwhqLt~~ll~~~~~~f~~~~~ke~E~~~n~li~l~~~-~~~~~~~~~lv~~l~~~v~~~~~~~--------- 114 (349)
+-+...|.|.+....+ ...-.++.+.++...+.....++..+.. .++.+++..+.+.............
T Consensus 63 ~~y~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (434)
T 4b4t_Q 63 QLYVTMGAKDKLREFI-PHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL 141 (434)
T ss_dssp HHHHHHTCHHHHHHHH-HHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH-HHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3455678888876543 3344455554555555555555555543 4456666665553332222211111
Q ss_pred ---------hhhHHHHHHHHHhhccC---CchhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHHHHHHHHH
Q 018867 115 ---------PAMRLKILFNLYNLLEN---PYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLG 182 (349)
Q Consensus 115 ---------~~~rl~~L~~Lfn~l~~---~~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~ 182 (349)
....+.++..+...... .+....++..+..+....|+++.....++.........+.+......+|..
T Consensus 142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 11122333333333222 345677888888888899999988888888777777777788888999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHhcccCCCCCC-ChhHHHHHHHHHHHHHhcCCCeeee-cCCCChhhhhcccCCCchhHH
Q 018867 183 IANVLKESRSSSKDSFKFLTKYLATFSGEDAH-TMDEAKEEAVRTIIEFVKSPDMFQC-DLLDMPAIGQLENDAKYASVY 260 (349)
Q Consensus 183 ~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~~-~~~e~~~~A~~li~~aL~~p~iy~f-~LL~~p~v~~L~~~~~~~~l~ 260 (349)
...++.. .+++.+++++....+.+++..... ....+.....-.++.....+..-.. .++..+........++..++.
T Consensus 222 ~g~~~~~-~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (434)
T 4b4t_Q 222 SGILHCE-DKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMK 300 (434)
T ss_dssp HHHHTTS-SSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHH
T ss_pred HHHHHHH-HHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHH
Confidence 9998887 488999999988888877543221 1122333333344444444433222 222222222222233456889
Q ss_pred HHHHHHhcCChhhHHHHHhhChhhhhhcC---CChHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCchHH--HHH
Q 018867 261 QLLKIFLTQRLDGYLEFQAGNSALLKSYG---LVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFL--LLD 335 (349)
Q Consensus 261 ~LL~if~~G~l~~y~~~~~~~~~~~~~~~---l~~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~eve--~id 335 (349)
.|...|..+++..|......+...+.... -....+.+.++-..+..++. +-+.|+++.||+.++++.+++| +.+
T Consensus 301 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~-~y~~i~l~~la~~l~~~~~~~E~~l~~ 379 (434)
T 4b4t_Q 301 AVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIE-PFECVEISHISKIIGLDTQQVEGKLSQ 379 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHS-SCSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHHHhCcCHHHHHHHHHH
Confidence 99999999999999988776654332211 11456778888888888885 3678999999999999999875 444
Q ss_pred Hhhcc
Q 018867 336 LWYGL 340 (349)
Q Consensus 336 ~i~~~ 340 (349)
.|..|
T Consensus 380 lI~~~ 384 (434)
T 4b4t_Q 380 MILDK 384 (434)
T ss_dssp HHHHT
T ss_pred HHhCC
Confidence 44443
No 5
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.9e-05 Score=78.06 Aligned_cols=208 Identities=12% Similarity=0.083 Sum_probs=146.1
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHH
Q 018867 119 LKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSF 198 (349)
Q Consensus 119 l~~L~~Lfn~l~~~~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y 198 (349)
++++..+...-..+.....+++.++.++-..++...+...+..+......- .++..+.+ |+.+.-.+....+++..++
T Consensus 151 ~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-~d~~~~~~-lk~~~gl~~l~~r~f~~Aa 228 (429)
T 4b4t_R 151 EKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-GDWERRNR-YKTYYGIHCLAVRNFKEAA 228 (429)
T ss_dssp HHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-CCTHHHHH-HHHHHHHGGGGTSCHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-CCHHHHHH-HHHHHHHHHHHhChHHHHH
Confidence 445555554433456788899999999999999999999998888777642 23333333 3443333333347788888
Q ss_pred HHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeeee-c-CCCChhhhh-cccCCCchhHHHHHHHHhcCChhhHH
Q 018867 199 KFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQC-D-LLDMPAIGQ-LENDAKYASVYQLLKIFLTQRLDGYL 275 (349)
Q Consensus 199 ~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~f-~-LL~~p~v~~-L~~~~~~~~l~~LL~if~~G~l~~y~ 275 (349)
+..+.-+.+++..+ ...+...+..+++.++.+++.-++ . ++..|.+.. ++..|...++.+++..|-.+++..|.
T Consensus 229 ~~f~e~~~t~~~~e---~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~ 305 (429)
T 4b4t_R 229 KLLVDSLATFTSIE---LTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYF 305 (429)
T ss_dssp HHHHHHHHHSCCSC---HHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhccCCccc---hhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHH
Confidence 87776666665433 356778899999999988877666 4 888887754 45444556788899999999988874
Q ss_pred H-HHhhChhhhh-h--cCCChHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCchHH
Q 018867 276 E-FQAGNSALLK-S--YGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFL 332 (349)
Q Consensus 276 ~-~~~~~~~~~~-~--~~l~~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~eve 332 (349)
. +....+..+. + +.-..+.+.+.||..++..++. +-+.|+++.+|+.++++.+++|
T Consensus 306 ~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~-~Ys~I~l~~mA~~l~~s~~~~E 365 (429)
T 4b4t_R 306 PYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLE-SYKTLSLKSMASAFGVSVAFLD 365 (429)
T ss_dssp HHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHH-TCSEEEHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhH-HhceeeHHHHHHHhCcCHHHHH
Confidence 3 3332222111 1 1223688999999999999996 4789999999999999999764
No 6
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=0.00016 Score=71.79 Aligned_cols=193 Identities=13% Similarity=0.027 Sum_probs=133.6
Q ss_pred chhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCC
Q 018867 133 YSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGED 212 (349)
Q Consensus 133 ~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~ 212 (349)
.....+++..+.++...++.......+..+..-...-...+..+..||...+.++.. .++|.++|++......+++..+
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~-e~~y~~a~~~y~e~~~~~~~~~ 252 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLH-KREYLEVAQYLQEIYQTDAIKS 252 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcccccC
Confidence 346788888999999999988888888776655555566778899999999999887 4888888888666655554322
Q ss_pred CCChhHHHHHH-HHHHHHHhcCCCeeeec-CCCChhhhhcccCCCchhHHHHHHHHhcCChhhHHHHHhhChhhhhhcCC
Q 018867 213 AHTMDEAKEEA-VRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGL 290 (349)
Q Consensus 213 ~~~~~e~~~~A-~~li~~aL~~p~iy~f~-LL~~p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l 290 (349)
. +.+...+ ..++...+.+|..-..+ ++..+.... ..++.+++.+|+++|..+++..|..+.+.+...+.+..+
T Consensus 253 d---~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~--~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 253 D---EAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDN--NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp C---HHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHS--SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred C---HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcc--cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 1 2233333 44455566777654444 555433321 112466899999999999999998887766554433221
Q ss_pred -------C--hHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCchHH
Q 018867 291 -------V--HEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFL 332 (349)
Q Consensus 291 -------~--~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~eve 332 (349)
. -..+.+.++--.|..++. +-+.|+++.||+.++++.+++|
T Consensus 328 ~~~~~~~~~~~~~L~~~v~ehnl~~i~k-~Ys~I~l~~la~lL~l~~~evE 377 (445)
T 4b4t_P 328 AFGGEANKHHWEDLQKRVIEHNLRVISE-YYSRITLLRLNELLDLTESQTE 377 (445)
T ss_dssp SCCCSCSSHHHHHHHHHHHHHHHHHHHH-HEEEEEHHHHHHHHTSCHHHHH
T ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHH-HhceeeHHHHHHHhCcCHHHHH
Confidence 1 245666676666666664 3568999999999999999876
No 7
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=97.93 E-value=9.5e-05 Score=65.84 Aligned_cols=158 Identities=12% Similarity=0.073 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeeeecCCCChhhhhcc
Q 018867 172 DIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLE 251 (349)
Q Consensus 172 ~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~f~LL~~p~v~~L~ 251 (349)
+..++..|+--...++-. ++++.+++..+...+..++.+. ....+..-.-++...|....+ |.-..++
T Consensus 9 ~~~q~v~Y~YYlGr~~~~-~~~y~~A~~~L~~A~~~~~~~~---~~~k~~IL~yLIp~~Ll~G~i--------P~~~ll~ 76 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMF-DSDFKQAEEYLSFAFEHCHRSS---QKNKRMILIYLLPVKMLLGHM--------PTVELLK 76 (203)
T ss_dssp CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHHHHTTCE--------ECHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHCCHhH---HHHHHHHHHHHHHHHHHcCCC--------CCHHHhh
Confidence 445555555555555555 4789999998888777665432 244545555555555555444 3333333
Q ss_pred cCCCchhHHHHHHHHhcCChhhHHHHHhhChhhhhhcCCChHHHHHHHHHHHHhhhhhc-----CCCCcChHHHHhhcCC
Q 018867 252 NDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSN-----ESGQIPYGLIKDTLQV 326 (349)
Q Consensus 252 ~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~-----~~r~isy~~Ia~~l~i 326 (349)
.- +.....+|.+++-.||+..|++..++|...+.+-|+- .+.+|+|.+++-.+.++ +...||+++|+.++++
T Consensus 77 ~~-~~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~--lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~ 153 (203)
T 3t5x_A 77 KY-HLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIF--LILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKF 153 (203)
T ss_dssp HT-TCGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCH--HHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHH
T ss_pred hC-chhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChH--HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence 21 2235778999999999999999999998877766653 57899999999888753 3568999999999964
Q ss_pred ------CCchHH--HHHHhhccceeE
Q 018867 327 ------YFLTFL--LLDLWYGLFVVN 344 (349)
Q Consensus 327 ------~~~eve--~id~i~~~~~~~ 344 (349)
+.+||| +.++|+.|.+-.
T Consensus 154 ~~~~~~~~~evE~ila~lI~~G~Ikg 179 (203)
T 3t5x_A 154 MQVEDVDIDEVQCILANLIYMGHVKG 179 (203)
T ss_dssp TTCTTCCHHHHHHHHHHHHHHTSSCE
T ss_pred cCCCCCCHHHHHHHHHHHHHcCceEE
Confidence 566775 678888887744
No 8
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.006 Score=60.61 Aligned_cols=220 Identities=14% Similarity=0.077 Sum_probs=139.6
Q ss_pred hhhHHHHHHHHHhhccC--C-----c---hh---HHHHHHHHHHHHcCCCcchhhhhHHhHHHHHh--hc-CCCHHHHHH
Q 018867 115 PAMRLKILFNLYNLLEN--P-----Y---SR---FFVYMKALNLAVNGKVTEHIIPSFKKIDSFLK--EW-NIDIKDKRA 178 (349)
Q Consensus 115 ~~~rl~~L~~Lfn~l~~--~-----~---~r---~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~--~w-~~~~~~~~~ 178 (349)
.+.+-+++...||.--+ + . .| +.+...+.++.-+.|.++.+++.++.++.--. .. ..+..++..
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~ 221 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIE 221 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEe
Confidence 44456888999996422 1 1 12 44444555666689999999999998776411 12 234556666
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHhcc-cCCCCCC--ChhHHHHHHHHHHHHHhcCCCeeeecCCCChhhhhcccC--
Q 018867 179 LFLGIANVLKESRSSSKDSFKFLTKYLAT-FSGEDAH--TMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLEND-- 253 (349)
Q Consensus 179 ~y~~~a~~l~~~~~~~~~~y~~~l~yL~~-~~~~~~~--~~~e~~~~A~~li~~aL~~p~iy~f~LL~~p~v~~L~~~-- 253 (349)
|+--...++-. ++++.+++..+...+.. .+.+... .....+..-.-++...|....+ |.-.-+++.
T Consensus 222 Y~YYlGr~~~~-~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~--------P~~~ll~k~~~ 292 (455)
T 3t5v_B 222 YRYLLGRYYLL-NSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKM--------VKWGPLRPFLS 292 (455)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCC--------BCHHHHGGGSC
T ss_pred eeHHHHHHHHH-HccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCC--------CCHHHHcccch
Confidence 66666666655 48899999988886664 3322100 0122333333444444444322 333333321
Q ss_pred CCchh-HHHHHHHHhcCChhhHHHHHhhChhhhhhcCCChHHHHHHHHHHHHhhhhhc-------C--CCCcChHHHHhh
Q 018867 254 AKYAS-VYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSN-------E--SGQIPYGLIKDT 323 (349)
Q Consensus 254 ~~~~~-l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La~~-------~--~r~isy~~Ia~~ 323 (349)
+.-.+ ..+|.+++-.||+..|++..++|...+-+-|+ --.+..|+|.+++-.+.++ + ...||+++|+.+
T Consensus 293 ~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gi-ly~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~a 371 (455)
T 3t5v_B 293 QETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQL-LIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERV 371 (455)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHH
Confidence 11223 66799999999999999999999886666554 1468899999977665532 1 358999999999
Q ss_pred cC---------------------CCCchHH--HHHHhhccceeE
Q 018867 324 LQ---------------------VYFLTFL--LLDLWYGLFVVN 344 (349)
Q Consensus 324 l~---------------------i~~~eve--~id~i~~~~~~~ 344 (349)
++ ++.+|+| +..+|+.|++-.
T Consensus 372 L~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkG 415 (455)
T 3t5v_B 372 LQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRA 415 (455)
T ss_dssp HHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCE
T ss_pred HhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEE
Confidence 98 4667776 678899888743
No 9
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.02 Score=57.61 Aligned_cols=197 Identities=9% Similarity=-0.002 Sum_probs=121.2
Q ss_pred hhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCCC
Q 018867 134 SRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDA 213 (349)
Q Consensus 134 ~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~ 213 (349)
.+..++.-++...-..+..+....-+.+.. +- +-..+..+..+|+.-....+-. +++|.++++++...+...+.+..
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-fP-~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE-YP-HTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-SC-TTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCSCSSS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc-CC-cccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcchh
Confidence 455566666666656666655555444331 11 1135667777777777777776 48899999998887775544332
Q ss_pred CChhHHHHHHH-HHHHHHhcCCCeeeecCCCChhhh-hcccCCCchhHHHHHHHHhcCChhhHHHHHhhChhhhhhcCCC
Q 018867 214 HTMDEAKEEAV-RTIIEFVKSPDMFQCDLLDMPAIG-QLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLV 291 (349)
Q Consensus 214 ~~~~e~~~~A~-~li~~aL~~p~iy~f~LL~~p~v~-~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~ 291 (349)
. ..-+..+. -+++--|+...+=...++..|.++ +| .+.++|.++|..||+..|.+...+|...+..-|.-
T Consensus 306 a--~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L------~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty 377 (523)
T 4b4t_S 306 S--LGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSL------LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY 377 (523)
T ss_dssp C--SHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHH------HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT
T ss_pred h--hhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHH------HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChh
Confidence 2 22334444 334444443333222344444442 23 36889999999999999999999997766654432
Q ss_pred hHHHHHHHHHHHHhhhh---hcCCCCcChHHHHhhcCCC-CchHH--HHHHhhcccee
Q 018867 292 HEDCIAKMRLMSLVDLG---SNESGQIPYGLIKDTLQVY-FLTFL--LLDLWYGLFVV 343 (349)
Q Consensus 292 ~~~l~~KirLLtL~~La---~~~~r~isy~~Ia~~l~i~-~~eve--~id~i~~~~~~ 343 (349)
.+..|+|.-..=... +..-..||+++|+..++++ ++|+| +-.+|+.|.+-
T Consensus 378 --~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~ 433 (523)
T 4b4t_S 378 --QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIE 433 (523)
T ss_dssp --HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCce
Confidence 355555544332222 2224579999999999996 56676 56788888764
No 10
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=94.71 E-value=0.39 Score=42.97 Aligned_cols=174 Identities=11% Similarity=0.036 Sum_probs=99.4
Q ss_pred CCcchhhhhHHhHHHHHhhcCC-----CH---HHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCCCC-ChhHHH
Q 018867 150 KVTEHIIPSFKKIDSFLKEWNI-----DI---KDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAH-TMDEAK 220 (349)
Q Consensus 150 ~~~~~l~~~l~~~~~~L~~w~~-----~~---~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~~-~~~e~~ 220 (349)
++++.+...+..++.-|...++ +. ...|.+|..-+..--. .+|.++|=++.- -|.++-.+... ...+..
T Consensus 21 ~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~-~~D~~~F~~~~~-qLk~~Y~~~~~~s~~~~e 98 (229)
T 4b0z_A 21 KDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQ-TCDIESFARYAS-QVIPFYHDSLVPSSRMGL 98 (229)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHH-HHHHHHSSCCCCCTTHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHH-HHHHHHHccCCCCccHHH
Confidence 4555565666655555544432 11 2346777776655554 366544433333 33333222221 112333
Q ss_pred HHHHHHHHHHhcCCCeeeec--CCCChhhhhcccCCCchhHHHHHHHHhcCChhhHHHHHhhChhh-hhhcCCChHHHHH
Q 018867 221 EEAVRTIIEFVKSPDMFQCD--LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSAL-LKSYGLVHEDCIA 297 (349)
Q Consensus 221 ~~A~~li~~aL~~p~iy~f~--LL~~p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~~~~-~~~~~l~~~~l~~ 297 (349)
=.+.++... |...++-.|. |-.+|.=..+++++--...++|-+++..|++..|-...++.|.- ..-+ .+.+..
T Consensus 99 ~~~~~LL~l-L~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~---~~~l~~ 174 (229)
T 4b0z_A 99 VTGLNLLYL-LSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYF---MKIVMS 174 (229)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHH---HHHHHH
T ss_pred HHHHHHHHH-HHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHH---HHHHHH
Confidence 455565554 3344454553 22222212233342224568899999999999998887776531 1222 466889
Q ss_pred HHHHHHHhhhhhcCCCCcChHHHHhhcCCCCch
Q 018867 298 KMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLT 330 (349)
Q Consensus 298 KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~e 330 (349)
++|.-++..++.. -..||.+++++-|+.+.++
T Consensus 175 ~vR~~~l~~i~ka-Y~~i~l~~~~~~L~f~s~~ 206 (229)
T 4b0z_A 175 MVRNEIATCAEKV-YSEIPLSNATSLLYLENTK 206 (229)
T ss_dssp HHHHHHHHHHHHH-CSEEEHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHH-cCCCCHHHHHHHhCCCCHH
Confidence 9999998888854 4679999999999998654
No 11
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=80.28 E-value=30 Score=30.39 Aligned_cols=176 Identities=11% Similarity=-0.014 Sum_probs=92.2
Q ss_pred ccCCCCchhHHHHHHHhHhhhhcC-----CCccc-chhHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHhhccCC-hhh--
Q 018867 5 VPTSEEDPALAVVRFTSELAWADA-----GPEAA-EEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVS-DKD-- 75 (349)
Q Consensus 5 ~~~~~e~~~~~~~~~~~~~~~~~~-----~~~~a-~~e~~~~~~~~e~l~~~klwhqLt~~ll~~~~~~f~~~~-~ke-- 75 (349)
+|.+.-.|-......+++..+-.. +.... .+....+..+++.++..+.|.+....+... ....+ ..+
T Consensus 37 ~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~----l~~~~~~~~~~ 112 (293)
T 3u3w_A 37 IESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE----LKKEEYHPEFQ 112 (293)
T ss_dssp HHTTSCCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTCCCCHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH----hccccCChHHH
Confidence 355666677777777777665221 12222 234555667788999999998877554442 22211 122
Q ss_pred -HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCCCCh--hhHHHHHHHHHhhccCCchhHHHHHHHHHHHHcCCCc
Q 018867 76 -LECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKP--AMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVT 152 (349)
Q Consensus 76 -~E~~~n~li~l~~~~~~~~~~~~lv~~l~~~v~~~~~~~~--~~rl~~L~~Lfn~l~~~~~r~~v~~~il~la~~~~~~ 152 (349)
+-..+..+.......++.+++....++... +.....+.. ...+..++.+|... |+.
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~~lg~~y~~~--------------------g~~ 171 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIENAIANIYAEN--------------------GYL 171 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHHHHHHHHHHT--------------------TCH
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHc--------------------CCH
Confidence 233344344444444466777665554443 211111111 11234444444443 344
Q ss_pred chhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhc
Q 018867 153 EHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLA 206 (349)
Q Consensus 153 ~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~ 206 (349)
+.....++++-+..+..+........+|..++.+|... |+++++..+.-+.+.
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence 44444444443344444345666777778888888874 777776666555444
No 12
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=78.03 E-value=35 Score=29.91 Aligned_cols=176 Identities=11% Similarity=0.013 Sum_probs=85.9
Q ss_pred cCCCCchhHHHHHHHhHhhhhcCCCc-----ccc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHhhccCC-h---hh
Q 018867 6 PTSEEDPALAVVRFTSELAWADAGPE-----AAE-EQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVS-D---KD 75 (349)
Q Consensus 6 ~~~~e~~~~~~~~~~~~~~~~~~~~~-----~a~-~e~~~~~~~~e~l~~~klwhqLt~~ll~~~~~~f~~~~-~---ke 75 (349)
|.++-.|-.....-+++..+-....- ..+ .....+..+++.++..|.+.+....+.. .+...+ . ..
T Consensus 38 e~g~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~----~l~~~~~~~~~~~ 113 (293)
T 2qfc_A 38 ESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWN----ELKKEEYHPEFQQ 113 (293)
T ss_dssp HTSSSCCCHHHHHHHTTTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHTCCCCHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhCcCHHHHhccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHH----HhccccCChhHHH
Confidence 55666777777777777666322111 111 2344556788888888888877654433 222111 1 11
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCCCCh--hhHHHHHHHHHhhccCCchhHHHHHHHHHHHHcCCCcc
Q 018867 76 LECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKP--AMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTE 153 (349)
Q Consensus 76 ~E~~~n~li~l~~~~~~~~~~~~lv~~l~~~v~~~~~~~~--~~rl~~L~~Lfn~l~~~~~r~~v~~~il~la~~~~~~~ 153 (349)
....+..+.......++.+++....++........ .+.. ...+..++.+|. ..|+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~--------------------~~~~~~ 172 (293)
T 2qfc_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-IDVYQNLYIENAIANIYA--------------------ENGYLK 172 (293)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-SCTTHHHHHHHHHHHHHH--------------------HTTCHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHH--------------------HcCCHH
Confidence 22222233333334445666655554333211111 1111 112333334333 334454
Q ss_pred hhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcc
Q 018867 154 HIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLAT 207 (349)
Q Consensus 154 ~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~ 207 (349)
.....+++.-+..+..+.........|...+.+|... |+++++..+..+.+..
T Consensus 173 ~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 173 KGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 4444444443333433333333335677777777774 8777777666655543
No 13
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.93 E-value=8.6 Score=35.15 Aligned_cols=149 Identities=9% Similarity=0.015 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCC--CCCC-ChhHHHHHHHHHHHHHhcCCCeeeec--CCCChhh-hh
Q 018867 176 KRALFLGIANVLKESRSSSKDSFKFLTKYLATFSG--EDAH-TMDEAKEEAVRTIIEFVKSPDMFQCD--LLDMPAI-GQ 249 (349)
Q Consensus 176 ~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~--~~~~-~~~e~~~~A~~li~~aL~~p~iy~f~--LL~~p~v-~~ 249 (349)
.|.+|..-+.+--. ++|..+|-++....-..|.. +..+ +..+..=.+.++... |...++-.|. |-.+|.. ..
T Consensus 58 ar~v~E~~a~~si~-~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLyl-L~~n~~~efh~~Le~L~~~~~~ 135 (274)
T 4b4t_T 58 TKRILEVGALASIQ-TFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNL-LSQNNTTKFHSELQYLDKHIKN 135 (274)
T ss_dssp ---CHHHHHHCCSS-CSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHH-HHHHCSTHHHHHHHSSSCSSST
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHH-HHcCCHHHHHHHHHhcchhhHh
Confidence 45566655554433 46666655554443333322 1111 112333345555543 2223344552 4344543 34
Q ss_pred cccCCCchhHHHHHHHHhcCChhhHHHHHhhC--hh-hhhhcCCChHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCC
Q 018867 250 LENDAKYASVYQLLKIFLTQRLDGYLEFQAGN--SA-LLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQV 326 (349)
Q Consensus 250 L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~~--~~-~~~~~~l~~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i 326 (349)
+++++--..-.+|-+.+..|++..|-+...+. |. ...-+ .+.+..++|.-++..+.+. -+.||.+++++-|+.
T Consensus 136 ~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f---~d~l~~~iR~~a~~~i~ka-Y~~i~l~~~~~~L~F 211 (274)
T 4b4t_T 136 LEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSF---TDILKSAIRDEIAKNTELS-YDFLPLSNIKALLFF 211 (274)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHH---HHHHHHHHHHHHHHHHHHH-CSSCCHHHHHHHHTC
T ss_pred HhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHH---HHHHHHHHHHHHHHHHHHH-HhhcCHHHHHHHhCC
Confidence 55443223467888899999999987665553 32 11112 4678899999999988854 578999999999999
Q ss_pred CCch
Q 018867 327 YFLT 330 (349)
Q Consensus 327 ~~~e 330 (349)
+.++
T Consensus 212 ~s~~ 215 (274)
T 4b4t_T 212 NNEK 215 (274)
T ss_dssp CSHH
T ss_pred CCHH
Confidence 8654
No 14
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=49.99 E-value=12 Score=27.86 Aligned_cols=43 Identities=9% Similarity=-0.045 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCchH-HHHHHh-hcccee
Q 018867 296 IAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTF-LLLDLW-YGLFVV 343 (349)
Q Consensus 296 ~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~ev-e~id~i-~~~~~~ 343 (349)
..+.++|.++. . ++ +|+.+||+.++|+...| .+|... +.|+|.
T Consensus 17 ~~~~~IL~lL~--~--~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~ 61 (82)
T 1oyi_A 17 EIVCEAIKTIG--I--EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVY 61 (82)
T ss_dssp HHHHHHHHHHS--S--ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSE
T ss_pred HHHHHHHHHHH--H--cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 44566666555 3 34 99999999999998776 466665 667764
No 15
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=45.64 E-value=21 Score=25.53 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=24.3
Q ss_pred HHhhhhhcCCCCcChHHHHhhcCCCC--chHHHHHHhhc
Q 018867 303 SLVDLGSNESGQIPYGLIKDTLQVYF--LTFLLLDLWYG 339 (349)
Q Consensus 303 tL~~La~~~~r~isy~~Ia~~l~i~~--~eve~id~i~~ 339 (349)
.|++.+++ .+.|+|++|.+++.-+. -+.+-||.|+.
T Consensus 13 ~Li~~gK~-~G~lTy~EI~d~l~~~~~~ld~e~id~i~~ 50 (72)
T 2k6x_A 13 KLISLGKK-KGYITYEDIDKAFPPDFEGFDTNLIERIHE 50 (72)
T ss_dssp HHHHHHHH-HSSCBHHHHHHHCSCSCSSCCHHHHHHHHH
T ss_pred HHHHHHhH-cCCccHHHHHHhCccccccCCHHHHHHHHH
Confidence 36667754 46899999999986443 34555666654
No 16
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=43.00 E-value=1.8e+02 Score=25.99 Aligned_cols=128 Identities=8% Similarity=-0.021 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHcCCCcchhh
Q 018867 78 CIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPN-DKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHII 156 (349)
Q Consensus 78 ~~~n~li~l~~~~~~~~~~~~lv~~l~~~v~~~~~-~~~~~rl~~L~~Lfn~l~~~~~r~~v~~~il~la~~~~~~~~l~ 156 (349)
.+++.+..+....++.+++....+........... ......+..++.++........-...|...++++...++.....
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555566677776655543332222111 12233455666666665542222233333444443322211110
Q ss_pred ---------------hhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcc
Q 018867 157 ---------------PSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLAT 207 (349)
Q Consensus 157 ---------------~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~ 207 (349)
..+++.-..++.. ........++...+.++... |+++++..+.-+.+..
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~-g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHER-KNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Confidence 1122222233333 23445566677778888774 7777777666665553
No 17
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.63 E-value=2.5e+02 Score=26.83 Aligned_cols=109 Identities=8% Similarity=0.038 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhccCC----chhHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhh
Q 018867 93 LDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENP----YSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKE 168 (349)
Q Consensus 93 ~~~~~~lv~~l~~~v~~~~~~~~~~rl~~L~~Lfn~l~~~----~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~ 168 (349)
+....++|+.++.-+.+.+......++..+.++...-... ..|+++-..+.++-...|++......+.++......
T Consensus 90 k~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~ 169 (445)
T 4b4t_P 90 KLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG 169 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 3444557776666554433223344566665554433221 248888888888888889988888888876543321
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q 018867 169 WNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTK 203 (349)
Q Consensus 169 w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~ 203 (349)
..+...+-.+|...+..+-.. +++..+...+-+
T Consensus 170 -~~~~~~kve~~l~q~rl~l~~-~d~~~a~~~~~k 202 (445)
T 4b4t_P 170 -SMEMSEKIQFILEQMELSILK-GDYSQATVLSRK 202 (445)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence 345677888999999888874 877776665555
No 18
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.78 E-value=2.2e+02 Score=25.66 Aligned_cols=162 Identities=13% Similarity=0.060 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhHHhhccCC------------hhhHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHh
Q 018867 40 LCLEAQESMVMGRWMDLASLMLTSADLMFSKVS------------DKDLECIFTVICNLVTKPESLDEVHEMTKLISGKI 107 (349)
Q Consensus 40 ~~~~~e~l~~~klwhqLt~~ll~~~~~~f~~~~------------~ke~E~~~n~li~l~~~~~~~~~~~~lv~~l~~~v 107 (349)
..++.+.+..+|.+.+-...+....... .... -++.+..+.-+..+..+.++.+++.+....+....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5677888888888887765544421110 0000 02334555555555555556666666554433322
Q ss_pred hcCCCCCh--hhHHHHHHHHHhhccC--------------------CchhHHHHHHHHHHHHcCCCcchhhhhHHhHHHH
Q 018867 108 IQQPNDKP--AMRLKILFNLYNLLEN--------------------PYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSF 165 (349)
Q Consensus 108 ~~~~~~~~--~~rl~~L~~Lfn~l~~--------------------~~~r~~v~~~il~la~~~~~~~~l~~~l~~~~~~ 165 (349)
.+..+.. ......++.++...+. ...++.++..+..+-...|.++...+.+.++-..
T Consensus 86 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 86 -MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp -HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 1111110 0111222333222211 2345556665666655666666666666655444
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHh
Q 018867 166 LKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYL 205 (349)
Q Consensus 166 L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL 205 (349)
....+ +......+|...+..+... |++.++-...-+.+
T Consensus 165 ~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 165 FKKLD-DKPSLVDVHLLESKVYHKL-RNLAKSKASLTAAR 202 (434)
T ss_dssp HTTSS-CSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHhcc-cchhHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 43322 3455677788888888774 77766555444433
No 19
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=36.32 E-value=38 Score=24.40 Aligned_cols=44 Identities=7% Similarity=-0.102 Sum_probs=29.3
Q ss_pred HHHHHHhhhhhcCCCCcChHHHHhhcCCCCchHH-HHHHh-hcccee
Q 018867 299 MRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFL-LLDLW-YGLFVV 343 (349)
Q Consensus 299 irLLtL~~La~~~~r~isy~~Ia~~l~i~~~eve-~id~i-~~~~~~ 343 (349)
.++|.++.--.. +..+|+.+||+.++++...|. +|... +.|+|.
T Consensus 17 ~~IL~~L~~~~~-~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 17 QRILKFLEELGE-GKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHCS-SSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCC-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 345544443322 457999999999999987763 55555 566663
No 20
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=35.94 E-value=2.4e+02 Score=25.24 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhc
Q 018867 173 IKDKRALFLGIANVLKESRSSSKDSFKFLTKYLA 206 (349)
Q Consensus 173 ~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~ 206 (349)
......++...+.++... |+++++..+.-+.+.
T Consensus 332 ~~~~~~~~~~la~~y~~~-g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 332 HAYIEACARSAAAVFESS-CHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
Confidence 344556667777777774 777666666554443
No 21
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=35.62 E-value=2.6e+02 Score=25.64 Aligned_cols=115 Identities=10% Similarity=-0.009 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHhhccCChhhH-HHHHHHHHHHhcCCCChhHHHHHHHHHHHHhhcCCCCC
Q 018867 36 QVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDL-ECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDK 114 (349)
Q Consensus 36 e~~~~~~~~e~l~~~klwhqLt~~ll~~~~~~f~~~~~ke~-E~~~n~li~l~~~~~~~~~~~~lv~~l~~~v~~~~~~~ 114 (349)
.+.+.+.++++.++.|.+-+--..+.+...-..++..-.+. +=+|.--..++. -+....+..++-.+++...+....-
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~-~~Q~~sa~DLa~llvev~~~~~~~~ 90 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLK-AKQGGSGTDLIFYLLEVYDLAEVKV 90 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-CCCcchHHHHHHHHHHHHHHcCCCC
Confidence 48899999999999999877765555544444443222232 222332223332 2233333445554555554443333
Q ss_pred hhhHHHHHHHHHhhccC-CchhHHHHHHHHHHHHcCCC
Q 018867 115 PAMRLKILFNLYNLLEN-PYSRFFVYMKALNLAVNGKV 151 (349)
Q Consensus 115 ~~~rl~~L~~Lfn~l~~-~~~r~~v~~~il~la~~~~~ 151 (349)
....+.-|..|++.+|+ ++.|.......++.+.+.+.
T Consensus 91 ~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~ 128 (312)
T 2wpv_A 91 DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE 128 (312)
T ss_dssp SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC
Confidence 34466667799999886 56788877788887775544
No 22
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=26.02 E-value=1e+02 Score=24.07 Aligned_cols=54 Identities=11% Similarity=0.093 Sum_probs=35.1
Q ss_pred hhcCCChHHHHHHHHHHHHhhhhhcCCCCcChHHHHhhcCCCCchHH-HHH-Hhhccce
Q 018867 286 KSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFL-LLD-LWYGLFV 342 (349)
Q Consensus 286 ~~~~l~~~~l~~KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~eve-~id-~i~~~~~ 342 (349)
..+|++..... -++.|......+..-+|.++||+.++++..+|- .|+ -++.|+|
T Consensus 26 ~~lgLt~~e~~---vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI 81 (128)
T 2vn2_A 26 KQLGLGEGELV---LLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMI 81 (128)
T ss_dssp TTTTCCHHHHH---HHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSS
T ss_pred HHcCCCHHHHH---HHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 34677766543 666666665433445899999999999988752 332 3444554
No 23
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=22.73 E-value=93 Score=25.60 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=30.0
Q ss_pred HHHHhhhhhcCCCCcChHHHHhhcCCCCchHH-HHH-HhhccceeE
Q 018867 301 LMSLVDLGSNESGQIPYGLIKDTLQVYFLTFL-LLD-LWYGLFVVN 344 (349)
Q Consensus 301 LLtL~~La~~~~r~isy~~Ia~~l~i~~~eve-~id-~i~~~~~~~ 344 (349)
+-+|+-|+..+++.+|-++||+.++||..-++ ++. --++|+|.+
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s 60 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTG 60 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 34455556433567999999999999998765 333 356777654
No 24
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.56 E-value=1.2e+02 Score=26.48 Aligned_cols=58 Identities=9% Similarity=0.159 Sum_probs=37.4
Q ss_pred HHHHHHHhcCChhhHHHHHhhChhhhhhc-CCChHHHHHHHHHHHHhhhhhcC-CCCcChH
Q 018867 260 YQLLKIFLTQRLDGYLEFQAGNSALLKSY-GLVHEDCIAKMRLMSLVDLGSNE-SGQIPYG 318 (349)
Q Consensus 260 ~~LL~if~~G~l~~y~~~~~~~~~~~~~~-~l~~~~l~~KirLLtL~~La~~~-~r~isy~ 318 (349)
+.++.+|-.|+..+|.+....-..++... ++ .....+|+|++-+++=...+ +=..+|+
T Consensus 27 ~~~c~aFR~~r~~dFrq~rdi~eall~~~~~~-~a~~~k~i~icQfL~RI~eG~~LD~~Fd 86 (211)
T 3bqo_A 27 LSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSL-TACQLRTIYICQFLTRIAAGKTLDAQFE 86 (211)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTCSCC-CHHHHHHHHHHHHHHHHHTTTCTTEECS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHhccccc-cccccchHHHHHHHHHHHcCCCCCCccC
Confidence 45789999999999998875555544322 22 33447899999877755431 2244454
No 25
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=21.72 E-value=73 Score=25.66 Aligned_cols=44 Identities=16% Similarity=0.058 Sum_probs=29.7
Q ss_pred HHHHhhhhhcCCCCcChHHHHhhcCCCCchHH--HHHHhhccceeE
Q 018867 301 LMSLVDLGSNESGQIPYGLIKDTLQVYFLTFL--LLDLWYGLFVVN 344 (349)
Q Consensus 301 LLtL~~La~~~~r~isy~~Ia~~l~i~~~eve--~id~i~~~~~~~ 344 (349)
+-+|+.|+.++++.+|-++||+.++||..-+. +-.-.++|+|.+
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s 62 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYV 62 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 44555556433567999999999999987643 334456777654
No 26
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=21.58 E-value=80 Score=25.27 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=30.5
Q ss_pred HHHHHHhhhhhcCCCCcChHHHHhhcCCCCchHH--HHHHhhccceeE
Q 018867 299 MRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFL--LLDLWYGLFVVN 344 (349)
Q Consensus 299 irLLtL~~La~~~~r~isy~~Ia~~l~i~~~eve--~id~i~~~~~~~ 344 (349)
.-+-+|+.||.++. . |-++||+.++||..-++ +-.-.++|+|.+
T Consensus 10 yAl~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s 55 (145)
T 1xd7_A 10 VAIHILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLKKADILTS 55 (145)
T ss_dssp HHHHHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEe
Confidence 34556667775434 4 99999999999987543 345567777754
No 27
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=21.52 E-value=35 Score=23.38 Aligned_cols=20 Identities=5% Similarity=-0.079 Sum_probs=17.3
Q ss_pred CCcChHHHHhhcCCCCchHH
Q 018867 313 GQIPYGLIKDTLQVYFLTFL 332 (349)
Q Consensus 313 r~isy~~Ia~~l~i~~~eve 332 (349)
...||++||+.++++..-|.
T Consensus 24 ~g~s~~eIA~~lgis~~tV~ 43 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIR 43 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 56899999999999988653
No 28
>1puo_A Major allergen I polypeptide, fused chain 2, chain 1; CAT allergen, uteroglobin, secretoglobin; 1.85A {Felis catus} SCOP: a.101.1.1 a.101.1.1
Probab=21.40 E-value=3.5e+02 Score=22.43 Aligned_cols=99 Identities=21% Similarity=0.213 Sum_probs=48.7
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHhcCCCeeeecCCCC
Q 018867 165 FLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDM 244 (349)
Q Consensus 165 ~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~~~~~~~~~~e~~~~A~~li~~aL~~p~iy~f~LL~~ 244 (349)
.|...+..+.++.+| ..|-|.|.+. |-.......-+.+==+++.+- ..|+.+-.+....-+-+|-++ .
T Consensus 28 ~Ls~fnAT~~Er~A~-EKIQDCY~E~-GlkaK~Ld~qVM~si~~S~eC---~~eav~~~~e~~~~~~lgrgi-------C 95 (170)
T 1puo_A 28 SLTKVNATEPERTAM-KKIQDCYVEN-GLISRVLDGLVMTTISSSKDC---MGEAVQNTVEDLKLNTLGREI-------C 95 (170)
T ss_dssp HHHHTTCCHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHTSTTC----------------------CC-------C
T ss_pred HHHHhcCChHHHHHH-HHHHHHHhcc-chhhhhhhHHHHHHHHcChHH---HHHHHHHHHHhhccccccccc-------C
Confidence 455667777766665 8899999884 754444443333222233322 234444444433333344443 4
Q ss_pred hhhhhcccCCCchhHHHHHHHHhcCChhhHHHHHhh---Chhhhhh
Q 018867 245 PAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAG---NSALLKS 287 (349)
Q Consensus 245 p~v~~L~~~~~~~~l~~LL~if~~G~l~~y~~~~~~---~~~~~~~ 287 (349)
|+++. =...|..|+.++|.+..++ +|..+++
T Consensus 96 PA~~~------------~V~LFl~Gt~EeYve~vkqY~~~p~vLen 129 (170)
T 1puo_A 96 PAVKR------------DVDLFLTGTPDEYVEQVAQYKALPVVLEN 129 (170)
T ss_dssp HHHHH------------HHHHHHHSCHHHHHHHHHTTCCCHHHHHH
T ss_pred hhHHh------------hhhhhccCChHHHHHHHHHhcCChHHHHh
Confidence 66542 3568999999999877644 4665543
No 29
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=21.36 E-value=3.6e+02 Score=22.48 Aligned_cols=72 Identities=14% Similarity=0.000 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHcCCCcchhhhhHHhHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhccc
Q 018867 135 RFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATF 208 (349)
Q Consensus 135 r~~v~~~il~la~~~~~~~~l~~~l~~~~~~L~~w~~~~~~~~~~y~~~a~~l~~~~~~~~~~y~~~l~yL~~~ 208 (349)
...++..+..+....|+.+.....++..-+.....+ +.......+...+.++... |+++++....-+.+...
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHH
Confidence 345555555555667777666666655444443332 2445566777788888875 88888888877777654
No 30
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=20.37 E-value=63 Score=22.34 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=29.3
Q ss_pred HHHHHHHhhhhhcCCCCcChHHHHhhcCCCCchHH-HHHHhh-cccee
Q 018867 298 KMRLMSLVDLGSNESGQIPYGLIKDTLQVYFLTFL-LLDLWY-GLFVV 343 (349)
Q Consensus 298 KirLLtL~~La~~~~r~isy~~Ia~~l~i~~~eve-~id~i~-~~~~~ 343 (349)
+-++|.++. .. .+.++..+||+.++++...|+ +|.... .|+|.
T Consensus 12 ~~~IL~~L~--~~-~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 12 EQKILQVLS--DD-GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHH--HH-CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH--Hc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 344555543 22 356999999999999988876 566543 46654
No 31
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.35 E-value=1.3e+02 Score=26.59 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=34.4
Q ss_pred HHHHHHHhcCChhhHHHHHhhChhhh-hhcCCChHHHHHHHHHHHHhhhhh
Q 018867 260 YQLLKIFLTQRLDGYLEFQAGNSALL-KSYGLVHEDCIAKMRLMSLVDLGS 309 (349)
Q Consensus 260 ~~LL~if~~G~l~~y~~~~~~~~~~~-~~~~l~~~~l~~KirLLtL~~La~ 309 (349)
+.++.+|-.|+..+|.++..--..++ ..++. +..+.+++|++.+++=..
T Consensus 21 ~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~-~~~~~k~iri~QfLsRI~ 70 (235)
T 3bu8_A 21 HEALRAFRGSRYGDFRQIRDIMQALLVRPLGK-EHTVSRLLRVMQCLSRIE 70 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHhCcccc-cccchhHHHHHHHHHHHH
Confidence 35788999999999998875555444 22222 455689999998866443
Done!