Query 018867
Match_columns 349
No_of_seqs 184 out of 458
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 07:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018867.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018867hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l0oc_ a.4.13.2 (C:) SigmaF { 70.6 1.1 7.7E-05 29.4 2.1 26 312-337 29-55 (57)
2 d1i1ga1 a.4.5.32 (A:2-61) LprA 54.8 2.8 0.0002 27.5 1.9 21 312-332 15-35 (60)
3 d2cg4a1 a.4.5.32 (A:4-66) Regu 53.6 6.3 0.00046 25.8 3.7 34 312-345 17-52 (63)
4 d1mkma1 a.4.5.33 (A:1-75) Tran 49.9 5.4 0.0004 27.1 2.9 32 300-331 6-37 (75)
5 d2cyya1 a.4.5.32 (A:5-64) Puta 49.0 3.9 0.00028 26.6 1.9 21 312-332 15-35 (60)
6 d2cfxa1 a.4.5.32 (A:1-63) Tran 44.5 5 0.00037 26.4 1.9 21 312-332 17-37 (63)
7 d1dwka1 a.35.1.4 (A:1-86) Cyan 34.3 15 0.0011 25.8 3.2 26 312-339 24-49 (86)
8 d1rp3a1 a.4.13.1 (A:87-163) Si 33.7 5.8 0.00042 26.9 0.9 27 312-338 24-51 (77)
9 d1kl9a1 a.60.14.1 (A:89-182) E 33.1 11 0.00077 27.1 2.2 30 13-54 19-48 (94)
10 d3bqoa1 a.146.1.1 (A:62-265) T 31.0 40 0.0029 27.3 5.7 49 260-308 23-71 (204)
11 d1rp3a2 a.4.13.2 (A:164-234) S 27.6 13 0.00093 24.3 1.8 20 313-332 36-55 (71)
12 d1or7a1 a.4.13.2 (A:120-187) S 27.2 13 0.00095 24.2 1.8 21 312-332 32-52 (68)
13 d1ufma_ a.4.5.47 (A:) COP9 sig 24.9 17 0.0012 25.1 2.1 31 311-341 27-59 (84)
14 d1j0ga_ d.15.1.6 (A:) Hypothet 23.8 11 0.00081 26.2 0.8 22 4-25 27-48 (92)
No 1
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=70.56 E-value=1.1 Score=29.44 Aligned_cols=26 Identities=15% Similarity=-0.029 Sum_probs=22.7
Q ss_pred CCCcChHHHHhhcCCCCchH-HHHHHh
Q 018867 312 SGQIPYGLIKDTLQVYFLTF-LLLDLW 337 (349)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~ev-e~id~i 337 (349)
+|+-|.+|||+++++|.++| +.+++.
T Consensus 29 gRePT~~EiA~~l~~~~e~V~~~l~a~ 55 (57)
T d1l0oc_ 29 GRAPTVTEIADHLGISPEDVVLAQEAV 55 (57)
T ss_dssp TSCCBHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 88999999999999999997 566654
No 2
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=54.83 E-value=2.8 Score=27.48 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=18.5
Q ss_pred CCCcChHHHHhhcCCCCchHH
Q 018867 312 SGQIPYGLIKDTLQVYFLTFL 332 (349)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eve 332 (349)
+..+||.+||+.++++...|+
T Consensus 15 n~r~s~~~lA~~~gls~~~v~ 35 (60)
T d1i1ga1 15 DARTPFTEIAKKLGISETAVR 35 (60)
T ss_dssp CTTCCHHHHHHHHTSCHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHH
Confidence 567899999999999998864
No 3
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=53.62 E-value=6.3 Score=25.78 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=24.1
Q ss_pred CCCcChHHHHhhcCCCCchHH-HHHHh-hccceeEE
Q 018867 312 SGQIPYGLIKDTLQVYFLTFL-LLDLW-YGLFVVNV 345 (349)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eve-~id~i-~~~~~~~~ 345 (349)
+..+||.+||+.++++...|+ -|+.+ ..|++..+
T Consensus 17 ~~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~GiI~~~ 52 (63)
T d2cg4a1 17 NARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 52 (63)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeE
Confidence 466899999999999999875 34443 34555433
No 4
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=49.91 E-value=5.4 Score=27.06 Aligned_cols=32 Identities=9% Similarity=0.249 Sum_probs=24.0
Q ss_pred HHHHHhhhhhcCCCCcChHHHHhhcCCCCchH
Q 018867 300 RLMSLVDLGSNESGQIPYGLIKDTLQVYFLTF 331 (349)
Q Consensus 300 rLLtL~~La~~~~r~isy~~Ia~~l~i~~~ev 331 (349)
|-+.+++...+..+.++.++||+.+++|..-+
T Consensus 6 r~l~IL~~~a~~~~~~s~~eia~~~~~~~st~ 37 (75)
T d1mkma1 6 KAFEILDFIVKNPGDVSVSEIAEKFNMSVSNA 37 (75)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHH
Confidence 45566666543367899999999999997653
No 5
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=48.99 E-value=3.9 Score=26.57 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=18.1
Q ss_pred CCCcChHHHHhhcCCCCchHH
Q 018867 312 SGQIPYGLIKDTLQVYFLTFL 332 (349)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eve 332 (349)
+..+||.+||+.++++...|.
T Consensus 15 n~r~s~~eiA~~l~ls~~~v~ 35 (60)
T d2cyya1 15 DGKAPLREISKITGLAESTIH 35 (60)
T ss_dssp CTTCCHHHHHHHHCSCHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHH
Confidence 456799999999999998864
No 6
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=44.50 E-value=5 Score=26.36 Aligned_cols=21 Identities=0% Similarity=0.026 Sum_probs=18.4
Q ss_pred CCCcChHHHHhhcCCCCchHH
Q 018867 312 SGQIPYGLIKDTLQVYFLTFL 332 (349)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eve 332 (349)
+..+||.+||+.++++...|.
T Consensus 17 n~r~s~~~iA~~lgis~~tv~ 37 (63)
T d2cfxa1 17 DSRLSMRELGRKIKLSPPSVT 37 (63)
T ss_dssp CSCCCHHHHHHHHTCCHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHH
Confidence 466799999999999998874
No 7
>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.25 E-value=15 Score=25.83 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=19.8
Q ss_pred CCCcChHHHHhhcCCCCchHHHHHHhhc
Q 018867 312 SGQIPYGLIKDTLQVYFLTFLLLDLWYG 339 (349)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eve~id~i~~ 339 (349)
.+-+||++||+++|.+ +||+.-+.++
T Consensus 24 ~kgltw~~IA~~iG~s--~vwvtaa~lG 49 (86)
T d1dwka1 24 KKDLSFAEIADGTGLA--EAFVTAALLG 49 (86)
T ss_dssp HTTCCHHHHHTTSSSC--HHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCCC--HHHHHHHHhc
Confidence 5789999999998775 6676655554
No 8
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=33.74 E-value=5.8 Score=26.95 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=21.8
Q ss_pred CCCcChHHHHhhcCCCCchHH-HHHHhh
Q 018867 312 SGQIPYGLIKDTLQVYFLTFL-LLDLWY 338 (349)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eve-~id~i~ 338 (349)
+|.-+-+|||+.++++.+++. ++..+.
T Consensus 24 GR~Pt~~EiA~~lg~s~~e~~~~l~~~~ 51 (77)
T d1rp3a1 24 GREPTDEEVAKELGISTEELFKTLDKIN 51 (77)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 889999999999999999864 344433
No 9
>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.09 E-value=11 Score=27.10 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=22.5
Q ss_pred hHHHHHHHhHhhhhcCCCcccchhHHHHHHHHHHHHHcCCHH
Q 018867 13 ALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWM 54 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~a~~e~~~~~~~~e~l~~~klwh 54 (349)
.-+|.|++||..+-..+ .++|+||++=-|+
T Consensus 19 VhSIlRhVAe~~~~~~~------------~~lE~LY~~iaWp 48 (94)
T d1kl9a1 19 VYSILRHVAEVLEYTKD------------EQLESLFQRTAWV 48 (94)
T ss_dssp HHHHHHHHHHHTTCCSH------------HHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhCCCcc------------ccHHHHHHHhhcc
Confidence 45899999999884444 4778888877774
No 10
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.00 E-value=40 Score=27.25 Aligned_cols=49 Identities=8% Similarity=0.150 Sum_probs=33.8
Q ss_pred HHHHHHHhcCChhhHHHHHhhChhhhhhcCCChHHHHHHHHHHHHhhhh
Q 018867 260 YQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLG 308 (349)
Q Consensus 260 ~~LL~if~~G~l~~y~~~~~~~~~~~~~~~l~~~~l~~KirLLtL~~La 308 (349)
+.++.+|-.|+..+|.++..--..++....--+....+++|++-+++=.
T Consensus 23 ~~ac~aFR~~r~~dFr~~rdi~eall~~~~~~~~~~~k~i~i~QfLsRI 71 (204)
T d3bqoa1 23 LSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRI 71 (204)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHhCccccCccchhHHHHHHHHHHH
Confidence 4578999999999999887554444443322245666889999655544
No 11
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=27.61 E-value=13 Score=24.25 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=17.4
Q ss_pred CCcChHHHHhhcCCCCchHH
Q 018867 313 GQIPYGLIKDTLQVYFLTFL 332 (349)
Q Consensus 313 r~isy~~Ia~~l~i~~~eve 332 (349)
..+||++||+.+|++..-|.
T Consensus 36 ~~~s~~eIA~~lgis~~tv~ 55 (71)
T d1rp3a2 36 EELPAKEVAKILETSVSRVS 55 (71)
T ss_dssp SCCCHHHHHHHTTSCHHHHH
T ss_pred HhCCHHHHHHHHCCCHHHHH
Confidence 46899999999999988764
No 12
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=27.19 E-value=13 Score=24.22 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=17.8
Q ss_pred CCCcChHHHHhhcCCCCchHH
Q 018867 312 SGQIPYGLIKDTLQVYFLTFL 332 (349)
Q Consensus 312 ~r~isy~~Ia~~l~i~~~eve 332 (349)
-...||++||+.+|++..-|.
T Consensus 32 ~~~~s~~eIA~~lgis~~tv~ 52 (68)
T d1or7a1 32 LDGLSYEEIAAIMDCPVGTVR 52 (68)
T ss_dssp TTCCCHHHHHHHTTSCHHHHH
T ss_pred HhCCCHHHHHHHHCcCHHHHH
Confidence 356899999999999988764
No 13
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.89 E-value=17 Score=25.15 Aligned_cols=31 Identities=6% Similarity=-0.130 Sum_probs=23.4
Q ss_pred CCCCcChHHHHhhcCCCCchHH--HHHHhhccc
Q 018867 311 ESGQIPYGLIKDTLQVYFLTFL--LLDLWYGLF 341 (349)
Q Consensus 311 ~~r~isy~~Ia~~l~i~~~eve--~id~i~~~~ 341 (349)
+-..|+++.||+.++++.+++| +-+.|..|-
T Consensus 27 ~Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~ 59 (84)
T d1ufma_ 27 LYNNITFEELGALLEIPAAKAEKIASQMITEGR 59 (84)
T ss_dssp SCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTS
T ss_pred hhceeeHHHHHHHHCCCHHHHHHHHHHHHhcCe
Confidence 3567999999999999998765 455555443
No 14
>d1j0ga_ d.15.1.6 (A:) Hypothetical protein 1810045k17 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.82 E-value=11 Score=26.21 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=18.7
Q ss_pred cccCCCCchhHHHHHHHhHhhh
Q 018867 4 VVPTSEEDPALAVVRFTSELAW 25 (349)
Q Consensus 4 ~~~~~~e~~~~~~~~~~~~~~~ 25 (349)
++...|+-||.+|.+|.||-+.
T Consensus 27 vlsVpE~aPftAVlkfaAEeFk 48 (92)
T d1j0ga_ 27 VLSVPESTPFTAVLKFAAEEFK 48 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT
T ss_pred EEecCccCchHHHHHHHHHHcC
Confidence 4556789999999999999876
Done!