Query 018869
Match_columns 349
No_of_seqs 303 out of 2595
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:43:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02723 3-mercaptopyruvate su 100.0 1.2E-57 2.5E-62 434.4 26.8 290 59-348 5-294 (320)
2 COG2897 SseA Rhodanese-related 100.0 5.4E-56 1.2E-60 410.2 23.6 251 74-348 9-259 (285)
3 PRK11493 sseA 3-mercaptopyruva 100.0 1.5E-49 3.2E-54 372.8 25.9 253 74-348 3-256 (281)
4 PRK09629 bifunctional thiosulf 100.0 3.8E-48 8.2E-53 394.9 26.8 242 74-348 7-248 (610)
5 KOG1529 Mercaptopyruvate sulfu 100.0 1.2E-47 2.6E-52 347.0 20.6 255 74-347 3-260 (286)
6 cd01445 TST_Repeats Thiosulfat 99.9 2.8E-25 6.2E-30 186.7 12.8 119 78-197 1-137 (138)
7 cd01448 TST_Repeat_1 Thiosulfa 99.9 6.6E-23 1.4E-27 168.5 13.2 122 77-200 1-122 (122)
8 cd01449 TST_Repeat_2 Thiosulfa 99.9 1.7E-21 3.6E-26 159.0 10.5 106 78-197 1-117 (118)
9 cd01519 RHOD_HSP67B2 Member of 99.9 1.4E-21 3.1E-26 156.3 9.8 104 79-198 2-106 (106)
10 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 5.5E-21 1.2E-25 164.9 12.8 115 74-203 34-162 (162)
11 cd01533 4RHOD_Repeat_2 Member 99.8 1.5E-20 3.3E-25 151.5 11.6 100 74-200 8-109 (109)
12 cd01520 RHOD_YbbB Member of th 99.8 1.2E-20 2.7E-25 156.6 10.4 109 78-198 1-126 (128)
13 PLN02723 3-mercaptopyruvate su 99.8 3.2E-20 6.9E-25 177.2 12.0 129 74-207 188-319 (320)
14 TIGR03167 tRNA_sel_U_synt tRNA 99.8 1.5E-19 3.2E-24 170.9 15.2 192 91-338 2-211 (311)
15 cd01518 RHOD_YceA Member of th 99.8 4.7E-20 1E-24 146.5 9.3 99 76-197 2-100 (101)
16 PRK11784 tRNA 2-selenouridine 99.8 2.7E-19 5.8E-24 171.4 14.6 168 79-289 4-187 (345)
17 cd01525 RHOD_Kc Member of the 99.8 1.1E-19 2.4E-24 145.1 9.8 102 78-197 1-104 (105)
18 PRK00162 glpE thiosulfate sulf 99.8 4.2E-19 9.1E-24 142.8 11.2 103 75-206 4-106 (108)
19 KOG1530 Rhodanese-related sulf 99.8 5.3E-19 1.1E-23 142.5 10.4 115 74-204 21-135 (136)
20 cd01527 RHOD_YgaP Member of th 99.8 5.5E-19 1.2E-23 139.7 10.2 97 77-203 3-99 (99)
21 PRK09629 bifunctional thiosulf 99.8 5.8E-19 1.3E-23 180.8 13.1 121 74-208 145-274 (610)
22 smart00450 RHOD Rhodanese Homo 99.8 7.3E-19 1.6E-23 137.5 10.2 99 89-202 2-100 (100)
23 PRK11493 sseA 3-mercaptopyruva 99.8 6.3E-19 1.4E-23 165.4 11.4 118 74-206 151-280 (281)
24 cd01447 Polysulfide_ST Polysul 99.8 5.3E-19 1.1E-23 140.5 9.0 102 78-200 1-103 (103)
25 cd01534 4RHOD_Repeat_3 Member 99.8 8.1E-19 1.8E-23 137.9 9.8 93 78-198 1-95 (95)
26 cd01521 RHOD_PspE2 Member of t 99.8 1.1E-18 2.4E-23 141.0 9.8 100 76-203 8-110 (110)
27 cd01449 TST_Repeat_2 Thiosulfa 99.8 1.4E-18 3.1E-23 141.6 10.6 103 246-348 1-103 (118)
28 cd01526 RHOD_ThiF Member of th 99.8 9.6E-19 2.1E-23 143.9 9.5 108 74-201 6-116 (122)
29 PLN02160 thiosulfate sulfurtra 99.8 2.8E-18 6.1E-23 143.8 12.4 115 75-207 14-130 (136)
30 cd01528 RHOD_2 Member of the R 99.8 2.5E-18 5.3E-23 136.6 10.3 94 78-198 2-98 (101)
31 PF00581 Rhodanese: Rhodanese- 99.8 1.4E-18 2.9E-23 139.7 8.7 105 79-198 1-112 (113)
32 COG2897 SseA Rhodanese-related 99.8 4.3E-18 9.4E-23 158.0 11.6 121 73-207 153-284 (285)
33 cd01529 4RHOD_Repeats Member o 99.8 4.4E-18 9.4E-23 133.9 9.2 93 80-197 3-95 (96)
34 cd01530 Cdc25 Cdc25 phosphatas 99.8 4.7E-18 1E-22 139.7 9.8 99 77-197 3-120 (121)
35 cd01524 RHOD_Pyr_redox Member 99.7 9.4E-18 2E-22 130.5 10.2 89 78-197 1-89 (90)
36 cd01444 GlpE_ST GlpE sulfurtra 99.7 9.8E-18 2.1E-22 131.5 10.1 91 78-197 2-95 (96)
37 PRK08762 molybdopterin biosynt 99.7 4.5E-17 9.8E-22 158.9 17.0 104 76-207 3-106 (376)
38 cd01445 TST_Repeats Thiosulfat 99.7 1E-17 2.2E-22 140.9 10.7 103 246-348 1-123 (138)
39 PRK00142 putative rhodanese-re 99.7 2.1E-18 4.6E-23 163.6 5.7 179 74-348 12-196 (314)
40 cd01523 RHOD_Lact_B Member of 99.7 1.6E-17 3.5E-22 131.6 9.7 98 78-197 1-99 (100)
41 cd01535 4RHOD_Repeat_4 Member 99.7 1.9E-17 4.2E-22 140.2 10.6 96 83-207 2-98 (145)
42 cd01522 RHOD_1 Member of the R 99.7 2.1E-17 4.5E-22 135.1 9.0 103 78-199 1-105 (117)
43 cd01531 Acr2p Eukaryotic arsen 99.7 3.2E-17 6.8E-22 133.0 8.9 100 76-198 2-111 (113)
44 cd01532 4RHOD_Repeat_1 Member 99.7 7.8E-17 1.7E-21 125.9 9.4 87 86-198 5-92 (92)
45 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 1.5E-16 3.3E-21 129.0 8.9 98 77-197 3-112 (113)
46 cd00158 RHOD Rhodanese Homolog 99.7 1.4E-16 3.1E-21 122.3 8.3 88 83-197 2-89 (89)
47 cd01446 DSP_MapKP N-terminal r 99.7 8.3E-17 1.8E-21 134.1 7.0 109 77-198 1-126 (132)
48 cd01519 RHOD_HSP67B2 Member of 99.7 1.1E-16 2.3E-21 128.0 7.2 89 247-348 2-91 (106)
49 cd01448 TST_Repeat_1 Thiosulfa 99.7 3.7E-16 8.1E-21 128.2 8.7 99 246-348 2-105 (122)
50 PRK00142 putative rhodanese-re 99.6 8.6E-16 1.9E-20 145.8 11.0 103 73-198 109-211 (314)
51 cd01518 RHOD_YceA Member of th 99.6 4.5E-16 9.7E-21 123.6 7.5 84 245-348 3-86 (101)
52 TIGR02981 phageshock_pspE phag 99.6 1.1E-15 2.3E-20 121.5 9.2 80 91-198 18-97 (101)
53 PRK10287 thiosulfate:cyanide s 99.6 1.5E-15 3.3E-20 121.2 9.4 80 90-197 19-98 (104)
54 PRK01415 hypothetical protein; 99.6 2E-15 4.4E-20 137.7 10.9 102 74-199 110-212 (247)
55 cd01533 4RHOD_Repeat_2 Member 99.6 1.1E-15 2.4E-20 123.1 7.8 80 245-348 11-91 (109)
56 cd01520 RHOD_YbbB Member of th 99.6 1.1E-15 2.4E-20 126.8 7.0 91 246-348 1-112 (128)
57 COG0607 PspE Rhodanese-related 99.6 4.9E-15 1.1E-19 118.7 9.8 99 81-206 10-109 (110)
58 PRK05320 rhodanese superfamily 99.6 2.7E-15 5.9E-20 138.5 9.3 102 74-198 108-215 (257)
59 PLN02160 thiosulfate sulfurtra 99.6 8.7E-15 1.9E-19 122.7 8.8 89 245-348 16-106 (136)
60 cd01523 RHOD_Lact_B Member of 99.6 6.6E-15 1.4E-19 116.5 7.3 85 246-348 1-86 (100)
61 PRK07878 molybdopterin biosynt 99.6 1.3E-14 2.7E-19 142.3 10.6 101 74-201 285-386 (392)
62 cd01526 RHOD_ThiF Member of th 99.6 4.3E-15 9.3E-20 122.2 6.1 88 244-348 8-97 (122)
63 cd01534 4RHOD_Repeat_3 Member 99.6 4.3E-15 9.3E-20 116.6 5.1 79 246-348 1-81 (95)
64 KOG1530 Rhodanese-related sulf 99.5 1.4E-14 3.1E-19 116.9 6.3 95 242-349 21-115 (136)
65 cd01522 RHOD_1 Member of the R 99.5 2.6E-14 5.6E-19 116.7 7.7 87 246-348 1-89 (117)
66 cd01527 RHOD_YgaP Member of th 99.5 1.8E-14 4E-19 113.7 6.2 77 245-348 3-79 (99)
67 PRK05597 molybdopterin biosynt 99.5 5.3E-14 1.1E-18 136.1 9.6 95 75-198 260-354 (355)
68 cd01525 RHOD_Kc Member of the 99.5 2.9E-14 6.3E-19 113.7 6.3 88 246-348 1-90 (105)
69 cd01447 Polysulfide_ST Polysul 99.5 3E-14 6.4E-19 113.0 5.8 86 246-348 1-86 (103)
70 cd01528 RHOD_2 Member of the R 99.5 8E-14 1.7E-18 110.6 7.3 80 246-348 2-83 (101)
71 cd01524 RHOD_Pyr_redox Member 99.5 1E-13 2.2E-18 107.7 7.6 75 247-348 2-76 (90)
72 PRK07411 hypothetical protein; 99.5 1.4E-13 3.1E-18 134.6 10.3 104 74-202 280-385 (390)
73 TIGR03865 PQQ_CXXCW PQQ-depend 99.5 2.1E-13 4.7E-18 117.6 9.6 102 241-349 33-143 (162)
74 cd01444 GlpE_ST GlpE sulfurtra 99.5 1.3E-13 2.9E-18 107.9 7.5 77 246-348 2-81 (96)
75 smart00450 RHOD Rhodanese Homo 99.5 1.2E-13 2.6E-18 107.7 6.5 80 258-349 3-82 (100)
76 cd01530 Cdc25 Cdc25 phosphatas 99.5 1.4E-13 2.9E-18 113.2 6.7 79 245-346 3-92 (121)
77 PF00581 Rhodanese: Rhodanese- 99.4 7.3E-14 1.6E-18 112.0 5.0 90 247-348 1-97 (113)
78 PRK00162 glpE thiosulfate sulf 99.4 2.3E-13 5E-18 109.3 7.2 78 245-348 6-83 (108)
79 TIGR02981 phageshock_pspE phag 99.4 2.4E-13 5.1E-18 108.1 6.2 67 259-349 18-84 (101)
80 cd01529 4RHOD_Repeats Member o 99.4 3.9E-13 8.5E-18 105.6 6.5 72 257-348 10-81 (96)
81 PRK10287 thiosulfate:cyanide s 99.4 5.1E-13 1.1E-17 106.7 7.1 68 257-348 18-85 (104)
82 cd01521 RHOD_PspE2 Member of t 99.4 3E-13 6.4E-18 109.1 5.3 80 244-348 8-91 (110)
83 cd00158 RHOD Rhodanese Homolog 99.3 1.1E-12 2.5E-17 100.4 4.2 72 253-348 4-75 (89)
84 PRK01415 hypothetical protein; 99.3 4.1E-12 8.9E-17 116.1 7.9 86 242-348 110-196 (247)
85 cd01531 Acr2p Eukaryotic arsen 99.3 4.3E-12 9.4E-17 102.7 6.9 79 245-344 3-84 (113)
86 PRK05600 thiamine biosynthesis 99.3 6E-12 1.3E-16 122.3 8.4 94 77-194 272-369 (370)
87 cd01443 Cdc25_Acr2p Cdc25 enzy 99.3 7.1E-12 1.5E-16 101.5 7.0 77 245-342 3-86 (113)
88 cd01532 4RHOD_Repeat_1 Member 99.3 7.4E-12 1.6E-16 97.6 5.8 70 254-348 5-77 (92)
89 COG0607 PspE Rhodanese-related 99.2 1.3E-11 2.7E-16 98.8 6.2 71 255-349 16-87 (110)
90 PRK07411 hypothetical protein; 99.2 1.6E-11 3.4E-16 120.4 6.9 85 244-349 282-368 (390)
91 PRK05320 rhodanese superfamily 99.2 2.2E-11 4.8E-16 112.6 7.2 85 244-348 110-200 (257)
92 PRK08762 molybdopterin biosynt 99.2 2.9E-11 6.3E-16 118.1 7.4 79 245-348 4-82 (376)
93 KOG1529 Mercaptopyruvate sulfu 99.2 6.1E-11 1.3E-15 108.4 8.9 115 78-198 158-275 (286)
94 PRK07878 molybdopterin biosynt 99.2 4.6E-11 1E-15 117.2 6.9 83 242-348 285-368 (392)
95 cd01535 4RHOD_Repeat_4 Member 99.1 8.1E-11 1.8E-15 99.7 6.6 64 259-348 11-74 (145)
96 PRK05600 thiamine biosynthesis 99.1 9.6E-11 2.1E-15 113.9 6.2 83 245-348 272-357 (370)
97 PRK11784 tRNA 2-selenouridine 99.1 1.7E-10 3.7E-15 110.9 7.5 88 248-348 5-114 (345)
98 PRK05597 molybdopterin biosynt 99.0 2.6E-10 5.7E-15 110.4 5.6 80 243-348 260-339 (355)
99 TIGR03167 tRNA_sel_U_synt tRNA 99.0 7.5E-10 1.6E-14 105.0 6.2 79 259-348 2-100 (311)
100 cd01446 DSP_MapKP N-terminal r 99.0 6.4E-10 1.4E-14 92.5 5.1 76 246-335 2-87 (132)
101 COG1054 Predicted sulfurtransf 99.0 1.5E-09 3.3E-14 99.8 7.6 102 74-198 111-212 (308)
102 KOG3772 M-phase inducer phosph 99.0 9.3E-10 2E-14 102.7 6.3 99 75-198 155-275 (325)
103 PRK01269 tRNA s(4)U8 sulfurtra 98.9 7.2E-09 1.6E-13 104.4 9.2 73 90-191 406-482 (482)
104 PRK01269 tRNA s(4)U8 sulfurtra 98.9 3E-09 6.6E-14 107.1 6.1 65 258-348 406-474 (482)
105 KOG2017 Molybdopterin synthase 98.8 6.8E-09 1.5E-13 97.0 6.5 103 74-199 315-419 (427)
106 COG1054 Predicted sulfurtransf 98.3 1.1E-06 2.3E-11 81.3 6.7 86 243-348 112-197 (308)
107 KOG2017 Molybdopterin synthase 98.3 1.3E-06 2.8E-11 82.1 6.0 87 241-347 314-401 (427)
108 COG5105 MIH1 Mitotic inducer, 98.2 2.6E-06 5.7E-11 79.0 6.8 98 75-197 241-356 (427)
109 KOG3772 M-phase inducer phosph 97.8 4E-05 8.6E-10 72.1 5.6 78 245-345 157-245 (325)
110 COG2603 Predicted ATPase [Gene 96.3 0.0059 1.3E-07 56.6 4.8 95 90-197 14-127 (334)
111 TIGR01244 conserved hypothetic 96.2 0.034 7.4E-07 46.3 8.9 86 246-342 15-105 (135)
112 KOG1717 Dual specificity phosp 96.0 0.0044 9.4E-08 56.7 2.5 105 78-199 6-124 (343)
113 PF04273 DUF442: Putative phos 96.0 0.023 5E-07 45.7 6.5 91 245-344 14-107 (110)
114 COG5105 MIH1 Mitotic inducer, 95.9 0.016 3.5E-07 54.3 5.8 80 244-346 242-328 (427)
115 COG3453 Uncharacterized protei 93.8 0.26 5.7E-06 39.9 6.7 84 245-344 15-108 (130)
116 KOG3636 Uncharacterized conser 92.2 0.44 9.5E-06 46.9 6.9 100 78-197 309-427 (669)
117 PF04273 DUF442: Putative phos 87.9 2.2 4.8E-05 34.2 6.7 84 77-177 14-105 (110)
118 KOG1093 Predicted protein kina 86.8 0.14 3E-06 51.8 -1.0 95 75-195 621-717 (725)
119 TIGR01244 conserved hypothetic 85.8 5 0.00011 33.2 8.0 53 143-204 76-129 (135)
120 PLN02727 NAD kinase 82.0 2.5 5.3E-05 45.7 5.5 88 245-338 268-356 (986)
121 COG2603 Predicted ATPase [Gene 78.6 1.1 2.5E-05 41.8 1.6 87 249-347 6-113 (334)
122 PF09992 DUF2233: Predicted pe 77.2 1.7 3.7E-05 37.2 2.2 46 152-197 95-144 (170)
123 smart00195 DSPc Dual specifici 75.3 3.6 7.8E-05 33.7 3.6 29 320-348 75-106 (138)
124 cd00127 DSPc Dual specificity 74.7 8.1 0.00018 31.4 5.6 17 321-337 79-96 (139)
125 PLN02918 pyridoxine (pyridoxam 72.3 10 0.00022 39.0 6.6 31 158-189 136-168 (544)
126 COG3453 Uncharacterized protei 69.2 19 0.00042 29.3 6.2 85 76-176 14-105 (130)
127 COG2453 CDC14 Predicted protei 58.6 19 0.00042 31.2 4.9 46 139-184 85-134 (180)
128 COG2519 GCD14 tRNA(1-methylade 56.1 81 0.0018 29.2 8.6 29 320-348 185-213 (256)
129 PRK12550 shikimate 5-dehydroge 52.0 33 0.00072 32.0 5.6 47 143-191 108-154 (272)
130 PF13350 Y_phosphatase3: Tyros 51.7 24 0.00053 29.9 4.4 39 308-347 110-150 (164)
131 cd00127 DSPc Dual specificity 48.4 38 0.00082 27.3 4.9 29 155-183 79-109 (139)
132 COG2518 Pcm Protein-L-isoaspar 48.1 44 0.00096 30.0 5.5 57 142-198 58-135 (209)
133 PLN02727 NAD kinase 46.8 75 0.0016 34.9 7.8 86 76-171 267-355 (986)
134 PF05706 CDKN3: Cyclin-depende 44.8 33 0.00071 29.7 4.0 34 309-347 124-159 (168)
135 PTZ00393 protein tyrosine phos 42.4 55 0.0012 30.0 5.3 28 321-348 168-197 (241)
136 PTZ00242 protein tyrosine phos 40.6 59 0.0013 27.9 5.1 14 320-333 95-108 (166)
137 KOG1093 Predicted protein kina 39.8 5.1 0.00011 41.0 -1.9 38 245-296 623-660 (725)
138 COG2453 CDC14 Predicted protei 37.6 1.1E+02 0.0023 26.5 6.3 21 320-340 102-124 (180)
139 COG0169 AroE Shikimate 5-dehyd 36.8 76 0.0016 29.9 5.5 50 142-193 108-160 (283)
140 PLN02645 phosphoglycolate phos 36.6 1.5E+02 0.0032 28.1 7.5 111 76-203 14-134 (311)
141 smart00404 PTPc_motif Protein 36.5 60 0.0013 24.3 4.1 17 322-338 38-55 (105)
142 smart00012 PTPc_DSPc Protein t 36.5 60 0.0013 24.3 4.1 17 322-338 38-55 (105)
143 cd01486 Apg7 Apg7 is an E1-lik 35.5 1.7E+02 0.0037 27.9 7.6 39 160-200 2-40 (307)
144 smart00195 DSPc Dual specifici 34.7 86 0.0019 25.3 5.0 31 154-184 75-107 (138)
145 PF00782 DSPc: Dual specificit 34.4 35 0.00075 27.4 2.5 28 309-337 60-88 (133)
146 PRK12749 quinate/shikimate deh 34.3 85 0.0018 29.5 5.5 47 143-191 109-156 (288)
147 PF03162 Y_phosphatase2: Tyros 33.8 35 0.00077 29.2 2.6 41 306-346 74-115 (164)
148 KOG0333 U5 snRNP-like RNA heli 33.2 74 0.0016 32.7 4.9 54 138-193 498-551 (673)
149 cd01300 YtcJ_like YtcJ_like me 32.1 71 0.0015 32.0 4.9 29 320-348 109-137 (479)
150 PF07152 YaeQ: YaeQ protein; 31.5 1E+02 0.0022 26.8 5.0 44 139-190 86-132 (174)
151 KOG0330 ATP-dependent RNA heli 31.2 59 0.0013 32.1 3.8 38 309-349 289-326 (476)
152 PTZ00393 protein tyrosine phos 30.9 1.1E+02 0.0024 28.1 5.3 46 138-183 149-197 (241)
153 KOG3109 Haloacid dehalogenase- 28.1 1.5E+02 0.0033 26.9 5.6 47 139-190 160-206 (244)
154 KOG2015 NEDD8-activating compl 28.0 1.5E+02 0.0032 28.7 5.7 45 138-191 28-72 (422)
155 PRK14027 quinate/shikimate deh 27.4 1.4E+02 0.0031 28.0 5.7 47 143-191 112-159 (283)
156 COG4681 Uncharacterized protei 27.3 1.2E+02 0.0025 25.9 4.4 46 138-190 85-135 (181)
157 TIGR01809 Shik-DH-AROM shikima 26.8 1.4E+02 0.0029 27.9 5.4 47 143-191 108-157 (282)
158 smart00226 LMWPc Low molecular 26.4 89 0.0019 25.5 3.7 37 160-196 1-37 (140)
159 PF03853 YjeF_N: YjeF-related 26.3 1.5E+02 0.0033 25.3 5.3 38 150-188 18-57 (169)
160 PRK11070 ssDNA exonuclease Rec 25.7 87 0.0019 32.6 4.2 52 137-189 50-104 (575)
161 PF01451 LMWPc: Low molecular 25.6 48 0.001 27.0 1.9 37 160-196 1-41 (138)
162 TIGR02804 ExbD_2 TonB system t 25.5 2.7E+02 0.0058 22.3 6.3 46 142-189 71-118 (121)
163 PF00782 DSPc: Dual specificit 25.5 94 0.002 24.8 3.7 41 143-184 60-102 (133)
164 TIGR03121 one_C_dehyd_A formyl 25.3 2.6E+02 0.0057 29.0 7.5 27 171-198 165-193 (556)
165 PRK08644 thiamine biosynthesis 24.8 1.7E+02 0.0037 26.0 5.5 40 156-197 27-66 (212)
166 PTZ00242 protein tyrosine phos 24.7 1.8E+02 0.004 24.8 5.4 19 155-173 96-114 (166)
167 TIGR02355 moeB molybdopterin s 24.7 2.6E+02 0.0057 25.4 6.8 39 157-197 24-62 (240)
168 PF07021 MetW: Methionine bios 24.4 84 0.0018 27.8 3.3 50 283-332 123-172 (193)
169 PF01488 Shikimate_DH: Shikima 24.3 1.5E+02 0.0033 24.1 4.7 39 156-196 11-49 (135)
170 KOG2882 p-Nitrophenyl phosphat 24.2 2.3E+02 0.005 26.9 6.3 110 81-206 13-131 (306)
171 TIGR01796 CM_mono_aroH monofun 24.0 88 0.0019 25.4 3.0 49 143-191 24-74 (117)
172 PF05706 CDKN3: Cyclin-depende 23.8 82 0.0018 27.3 3.0 28 155-182 131-159 (168)
173 KOG3636 Uncharacterized conser 23.8 32 0.00068 34.4 0.5 32 259-301 326-357 (669)
174 TIGR02190 GlrX-dom Glutaredoxi 23.6 1.4E+02 0.0029 21.8 3.9 30 155-184 5-34 (79)
175 PF00501 AMP-binding: AMP-bind 23.6 1.5E+02 0.0032 28.5 5.2 40 309-348 32-71 (417)
176 KOG1717 Dual specificity phosp 23.3 46 0.001 31.1 1.5 39 246-299 6-44 (343)
177 TIGR02189 GlrX-like_plant Glut 23.1 1.5E+02 0.0033 22.8 4.3 35 156-190 6-41 (99)
178 TIGR00640 acid_CoA_mut_C methy 23.1 4E+02 0.0086 21.8 7.0 49 140-192 40-91 (132)
179 COG3048 DsdA D-serine dehydrat 22.6 90 0.002 29.9 3.2 40 307-346 251-294 (443)
180 COG2185 Sbm Methylmalonyl-CoA 22.4 2.7E+02 0.0058 23.4 5.8 53 137-193 47-102 (143)
181 PRK12361 hypothetical protein; 22.4 2.8E+02 0.0061 28.5 7.2 27 308-334 158-186 (547)
182 cd05311 NAD_bind_2_malic_enz N 22.4 1.8E+02 0.0039 26.2 5.2 45 145-191 12-59 (226)
183 PRK05852 acyl-CoA synthetase; 22.3 1.6E+02 0.0034 29.7 5.3 40 309-348 54-93 (534)
184 PF13242 Hydrolase_like: HAD-h 21.7 1.4E+02 0.0031 21.3 3.7 48 139-192 4-52 (75)
185 PF00899 ThiF: ThiF family; I 21.4 93 0.002 25.2 2.9 43 157-201 2-44 (135)
186 PRK12549 shikimate 5-dehydroge 20.8 2.2E+02 0.0048 26.6 5.6 48 143-192 112-160 (284)
187 PF14566 PTPlike_phytase: Inos 20.8 2.1E+02 0.0046 23.8 5.0 37 137-173 103-140 (149)
188 PRK13809 orotate phosphoribosy 20.6 2.8E+02 0.006 24.7 5.9 52 155-206 116-175 (206)
189 COG0009 SUA5 Putative translat 20.5 1.4E+02 0.003 26.8 4.0 33 305-337 43-75 (211)
190 PRK08223 hypothetical protein; 20.1 3.9E+02 0.0085 25.2 7.0 43 156-200 26-68 (287)
191 PRK07514 malonyl-CoA synthase; 20.0 1.9E+02 0.0041 28.6 5.4 40 309-348 39-78 (504)
No 1
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=100.00 E-value=1.2e-57 Score=434.40 Aligned_cols=290 Identities=84% Similarity=1.360 Sum_probs=259.6
Q ss_pred ccCCCCCCCCCCCCCCCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCC
Q 018869 59 AAGRRADYSTLSVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHM 138 (349)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~ 138 (349)
.+.|.+.+++.+++.+..+|+++||++++++++++|||+|+.++.+.+++..+|..||||||+|+|++.+.+.....+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~ 84 (320)
T PLN02723 5 GSETKANYSTQSISTNEPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHM 84 (320)
T ss_pred chhhcccCcccccccCCceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCC
Confidence 56788889999888888999999999999888899999998777665555578999999999999998887766667889
Q ss_pred CCCHHHHHHHHHHcCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcccCCCcchhHhhhhh
Q 018869 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAA 218 (349)
Q Consensus 139 lp~~~~~~~~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~~~~~~~~~~~~~~~ 218 (349)
+|++++|+++++.+||+++++|||||+.|...++|+||+|+++||++|++||||+.+|+++|+|+++..+.++++++.++
T Consensus 85 lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~ 164 (320)
T PLN02723 85 LPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAA 164 (320)
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCcccccccccc
Confidence 99999999999999999999999999888778899999999999999999999999999999999987654445555555
Q ss_pred HHHHHHHhcCcccCCcceeeccCCccccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccc
Q 018869 219 SEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQM 298 (349)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l 298 (349)
++.+++.+.++.+.+.+|..++++.++++.++|.+++++++.+|||+|++.||.|...++....+.||||||+|+||.++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~ 244 (320)
T PLN02723 165 SEAIEKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQM 244 (320)
T ss_pred ccccccccccCCCCCCcccccCCccceecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHh
Confidence 66667766666667788988888999999999999998777889999999999998877766778999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 299 LDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 299 ~~~~~~l~~~~el~~~~~~~~i~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
++.+++|++.+||+++|.+.|++++++||+||++|+||+.++++|+.+||
T Consensus 245 ~~~~~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~ 294 (320)
T PLN02723 245 LDSSQTLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGK 294 (320)
T ss_pred cCCCCCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCC
Confidence 98888999999999999999999999999999999999999999999998
No 2
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-56 Score=410.19 Aligned_cols=251 Identities=40% Similarity=0.737 Sum_probs=231.1
Q ss_pred CCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 018869 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~g 153 (349)
...+|+++||.+++++++++++|+|+..++.. ...+|..||||||++++++.+.+....+++++|++++|+++|+++|
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~--~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~G 86 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPD--DAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELG 86 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcc--hHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcC
Confidence 57899999999999988888888887766643 2689999999999999999877766668999999999999999999
Q ss_pred CCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHHhcCcccCC
Q 018869 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGP 233 (349)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
|+++++||+|++.+++.|+|+||+|+++||+||++||||+.+|+++|+|+++.++ ..++
T Consensus 87 I~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~---------------------~~~~ 145 (285)
T COG2897 87 IRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPP---------------------EPPP 145 (285)
T ss_pred CCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCC---------------------CCCC
Confidence 9999999999998889999999999999999999999999999999999999763 3466
Q ss_pred cceeeccCCccccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHH
Q 018869 234 TTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKK 313 (349)
Q Consensus 234 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~ 313 (349)
..|..+++...+++.++++..++....+|||+|+++||.|+.++|+... .||||||+|+||.++++++..|++.++++.
T Consensus 146 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~-~GHIPGAiNipw~~~~~~~~~~~~~~~~~~ 224 (285)
T COG2897 146 TTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGK-AGHIPGAINIPWTDLVDDGGLFKSPEEIAR 224 (285)
T ss_pred ccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCC-CCCCCCCcCcCHHHHhcCCCccCcHHHHHH
Confidence 7888889999999999999999988899999999999999999998775 899999999999999997788999999999
Q ss_pred HHHHcCCCCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 314 RFEQEGISLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 314 ~~~~~~i~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+++..||+++++||+||++|+||+..+++|+.+|+
T Consensus 225 l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~ 259 (285)
T COG2897 225 LYADAGIDPDKEVIVYCGSGVRASVTWLALAELGG 259 (285)
T ss_pred HHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999886
No 3
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=100.00 E-value=1.5e-49 Score=372.80 Aligned_cols=253 Identities=38% Similarity=0.761 Sum_probs=220.6
Q ss_pred CCCcccHHHHHHhcCCCCcEEEEeccCCCCCC-CCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 018869 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQ-RNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~-~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~ 152 (349)
...+|+++||++++++++++|||+|....... .+...+|..||||||+|+|+..+.+.....++++|++++|+++++.+
T Consensus 3 ~~~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T PRK11493 3 TTWFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMREL 82 (281)
T ss_pred cCcccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHc
Confidence 34789999999999988899999994322111 11257899999999999999877665556678899999999999999
Q ss_pred CCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHHhcCcccC
Q 018869 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVG 232 (349)
Q Consensus 153 gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
|++++++|||||.++...+++++|+|+.+||+||++|+||+.+|.++|+|+++..+ .+.
T Consensus 83 Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~---------------------~~~ 141 (281)
T PRK11493 83 GVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV---------------------ELP 141 (281)
T ss_pred CCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC---------------------CCC
Confidence 99999999999987766789999999999999999999999999999999998753 234
Q ss_pred CcceeeccCCccccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHH
Q 018869 233 PTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELK 312 (349)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~ 312 (349)
+.+|.+..++..+++.+++...+++++.+|||+|+++||.|...+|....+.||||||+|+||.++.+ ++.|+++++|+
T Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~-~~~~~~~~~l~ 220 (281)
T PRK11493 142 EGEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVR-EGELKTTDELD 220 (281)
T ss_pred CCcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcC-CCCcCCHHHHH
Confidence 66777777788899999999888777789999999999999877766566789999999999999875 46899999999
Q ss_pred HHHHHcCCCCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 313 KRFEQEGISLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 313 ~~~~~~~i~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
++|.+.|++++++||+||++|+||+.++++|+.+||
T Consensus 221 ~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~ 256 (281)
T PRK11493 221 AIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDV 256 (281)
T ss_pred HHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999998
No 4
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=3.8e-48 Score=394.87 Aligned_cols=242 Identities=24% Similarity=0.385 Sum_probs=217.2
Q ss_pred CCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 018869 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~g 153 (349)
..++||++||++++++++++|||+| +.++|..||||||+|+|++.+.......++++|+.++|++.++++|
T Consensus 7 ~~~lIs~~eL~~~l~~~~vvIIDvR---------~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lG 77 (610)
T PRK09629 7 LSLVIEPNDLLERLDAPELILVDLT---------SSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELG 77 (610)
T ss_pred CCceecHHHHHHHhcCCCEEEEECC---------ChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcC
Confidence 4578999999999998889999999 6789999999999999987654444456789999999999999999
Q ss_pred CCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHHhcCcccCC
Q 018869 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGP 233 (349)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
|+++++|||||+.++..|+|+||+|+++||++|++||||+.+|+.+|+|++++.+ ...+
T Consensus 78 I~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~---------------------~~~~ 136 (610)
T PRK09629 78 HNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVP---------------------PVAG 136 (610)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCC---------------------CCCC
Confidence 9999999999988777899999999999999999999999999999999988753 1234
Q ss_pred cceeeccCCccccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHH
Q 018869 234 TTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKK 313 (349)
Q Consensus 234 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~ 313 (349)
.+|..+.++..+++.+++.+++++++.+|||+|+++||.|+... ..+.||||||+|+||.++++.++.++++++|++
T Consensus 137 ~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~---~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~ 213 (610)
T PRK09629 137 GPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVV---AAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPE 213 (610)
T ss_pred cceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccc---cccCCCCCCCeecCHHHhcCCCCCCCCHHHHHH
Confidence 56766777788999999999998778899999999999997642 347899999999999998888888999999999
Q ss_pred HHHHcCCCCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 314 RFEQEGISLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 314 ~~~~~~i~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+|.+.|++++++||+||++|.||+.++++|+.+||
T Consensus 214 ~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~ 248 (610)
T PRK09629 214 ILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGY 248 (610)
T ss_pred HHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999998
No 5
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=100.00 E-value=1.2e-47 Score=347.02 Aligned_cols=255 Identities=44% Similarity=0.809 Sum_probs=235.3
Q ss_pred CCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 018869 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~g 153 (349)
...+|+++|+.+++.+.+++|||+.|+++...++...+|..-|||||++|+++.+.+..++.++++|..+.|++.++.+|
T Consensus 3 ~~~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 3 VDSIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cccccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 35789999999999988899999999999888888899999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEECC--CCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHHhcCccc
Q 018869 154 LENKDGLVVYDG--KGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVV 231 (349)
Q Consensus 154 i~~~~~VVvy~~--~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (349)
+++++.+|||+. .|.+.|+|+||+|+.+||++|++||||+.+|++.|+|++++...- |.
T Consensus 83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~~------------------p~- 143 (286)
T KOG1529|consen 83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVET------------------PY- 143 (286)
T ss_pred CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccccC------------------CC-
Confidence 999999999998 788899999999999999999999999999999999999976410 00
Q ss_pred CCcceeeccCCccccCHHHHHHH-hhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHH
Q 018869 232 GPTTFQTKFQPHLIWTLEQVKRN-IEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADE 310 (349)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~v~~~-~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~e 310 (349)
.+..+...++..++++.+++..+ .+.+++++||+|+.++|+|+.++|+.+...||||||+|+|+.+++++++..++++|
T Consensus 144 ~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~ed 223 (286)
T KOG1529|consen 144 SPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAED 223 (286)
T ss_pred CCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHH
Confidence 23445566788889999998877 67788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCEEEEcCChHHHHHHHHHHHhCc
Q 018869 311 LKKRFEQEGISLEKPVVTACGTGVTACILALVLFPVF 347 (349)
Q Consensus 311 l~~~~~~~~i~~~~~vivyC~~G~rA~~~~~~L~~~g 347 (349)
|+..|.++++..++|||+.|++|++|++.+.+|.+.|
T Consensus 224 l~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g 260 (286)
T KOG1529|consen 224 LKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG 260 (286)
T ss_pred HHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999887
No 6
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.93 E-value=2.8e-25 Score=186.71 Aligned_cols=119 Identities=37% Similarity=0.544 Sum_probs=102.3
Q ss_pred ccHHHHHHhcC----CCCcEEEEeccCCCCCCCCChhhhhc------------CCCCCceecCcccccccCCCCCCCCCC
Q 018869 78 VSVDWLHANLR----EPDLKVLDASWYMPDEQRNPFQEYQV------------AHIPGALFFDVDGVADRTTNLPHMLPS 141 (349)
Q Consensus 78 Is~~~L~~~l~----~~~~~iIDvR~~~~~~~~~~~~~y~~------------GHIPGAi~ip~~~l~~~~~~~~~~lp~ 141 (349)
||++||+++++ +++++|||+|+.+++. ++..++|.. ||||||+|+|+..+.+.......++|+
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~-~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~ 79 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGT-REARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPS 79 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccC-cchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCC
Confidence 68999999998 4679999999655543 334478887 999999999998776555556678999
Q ss_pred HHHHHHHHHHcCCCCCCcEEEECCC--CcchHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 142 EEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 142 ~~~~~~~~~~~gi~~~~~VVvy~~~--g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
.++|+++++.+||+++++||+||.. ++..|+|+||+|+++||+||++||||+.+|+
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 9999999999999999999999974 4568999999999999999999999999996
No 7
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.90 E-value=6.6e-23 Score=168.47 Aligned_cols=122 Identities=54% Similarity=1.039 Sum_probs=101.8
Q ss_pred cccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 018869 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (349)
Q Consensus 77 lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~ 156 (349)
+|++++|++++.+++.+|||+|..... .....+|..||||||+|+|+..+........+++++.++|++.++.+++++
T Consensus 1 ~i~~~~l~~~l~~~~~~ivDvR~~~~~--~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd01448 1 LVSPDWLAEHLDDPDVRILDARWYLPD--RDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISN 78 (122)
T ss_pred CcCHHHHHHHhCCCCeEEEEeecCCCC--CchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 488999999998777899999921000 001178999999999999998765433345678999999999999999999
Q ss_pred CCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCC
Q 018869 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (349)
Q Consensus 157 ~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G 200 (349)
+++|||||..|+.++++++++|+.+||++|++|+||+.+|..+|
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 99999999876568999999999999999999999999998764
No 8
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.86 E-value=1.7e-21 Score=159.04 Aligned_cols=106 Identities=27% Similarity=0.482 Sum_probs=93.1
Q ss_pred ccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhc-----------CCCCCceecCcccccccCCCCCCCCCCHHHHH
Q 018869 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV-----------AHIPGALFFDVDGVADRTTNLPHMLPSEEAFA 146 (349)
Q Consensus 78 Is~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~-----------GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~ 146 (349)
||+++|.+++++.+++|||+| +..+|.. ||||||+|+|+.++.... +.++++++|.
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR---------~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~----~~~~~~~~~~ 67 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDAR---------SPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED----GTFKSPEELR 67 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCC---------CHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC----CCcCCHHHHH
Confidence 578999999877678999999 5667765 999999999998765432 4678899999
Q ss_pred HHHHHcCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 147 AAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 147 ~~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
+.+..++++++++||+||..| .+|.++++.|+.+||++|++|+||+.+|.
T Consensus 68 ~~~~~~~~~~~~~iv~yc~~g-~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 68 ALFAALGITPDKPVIVYCGSG-VTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred HHHHHcCCCCCCCEEEECCcH-HHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 999999999999999999875 48999999999999999999999999996
No 9
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.86 E-value=1.4e-21 Score=156.30 Aligned_cols=104 Identities=21% Similarity=0.309 Sum_probs=91.4
Q ss_pred cHHHHHHhcC-CCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 018869 79 SVDWLHANLR-EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 157 (349)
Q Consensus 79 s~~~L~~~l~-~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~~ 157 (349)
|+++++++++ .++++|||+| +..+|..||||||+|+|+..+.+. ..+++++|++.++..+++++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR---------~~~e~~~ghIpgA~~ip~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 66 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVR---------EPEELKTGKIPGAINIPLSSLPDA------LALSEEEFEKKYGFPKPSKD 66 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECC---------CHHHHhcCcCCCcEEechHHhhhh------hCCCHHHHHHHhcccCCCCC
Confidence 6789999887 6679999999 788999999999999999876432 34567889999999999999
Q ss_pred CcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHh
Q 018869 158 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 158 ~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~ 198 (349)
++||+||..|. ++.+++++|+.+||+||++|+||+.+|.+
T Consensus 67 ~~ivv~c~~g~-~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 67 KELIFYCKAGV-RSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CeEEEECCCcH-HHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 99999998765 79999999999999999999999999963
No 10
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.85 E-value=5.5e-21 Score=164.89 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=91.8
Q ss_pred CCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChh----hhhc---------CCCCCceecCcccccccCCCCCCCCC
Q 018869 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQ----EYQV---------AHIPGALFFDVDGVADRTTNLPHMLP 140 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~----~y~~---------GHIPGAi~ip~~~l~~~~~~~~~~lp 140 (349)
....|+++|+++++++++.+||||| +.+ +|.. +|||||+|+|+..+.... -+
T Consensus 34 ~~~~vs~~el~~~l~~~~~~lIDVR---------~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~------~~ 98 (162)
T TIGR03865 34 GARVLDTEAAQALLARGPVALIDVY---------PRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLA------PA 98 (162)
T ss_pred CccccCHHHHHHHHhCCCcEEEECC---------CCccccccccccceeccccCCCCCCcEEecccCCCCCC------Cc
Confidence 4578999999999988788999999 222 3433 599999999964322111 12
Q ss_pred CHHHHHHHHHHcCC-CCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCc
Q 018869 141 SEEAFAAAVSALGL-ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (349)
Q Consensus 141 ~~~~~~~~~~~~gi-~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv 203 (349)
..+.|.+.+..+++ +++++||+||..|+.++.+++|+|+.+||+||++|+||+.+|+++|+|+
T Consensus 99 ~~~~~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 99 WQAYFRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred hhHHHHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 33457788877665 7999999999987767999999999999999999999999999999985
No 11
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.84 E-value=1.5e-20 Score=151.50 Aligned_cols=100 Identities=26% Similarity=0.280 Sum_probs=86.1
Q ss_pred CCCcccHHHHHHhcCCC-CcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 018869 74 KEPVVSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~-~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~ 152 (349)
..+.|++++|.+.+++. +.+|||+| +..+|..||||||+|+|+. +|...++.+
T Consensus 8 ~~~~i~~~~l~~~~~~~~~~~liDvR---------~~~e~~~ghIpgainip~~-----------------~l~~~~~~l 61 (109)
T cd01533 8 HTPSVSADELAALQARGAPLVVLDGR---------RFDEYRKMTIPGSVSCPGA-----------------ELVLRVGEL 61 (109)
T ss_pred cCCcCCHHHHHHHHhcCCCcEEEeCC---------CHHHHhcCcCCCceeCCHH-----------------HHHHHHHhc
Confidence 34679999999988754 57899999 7899999999999999985 345566777
Q ss_pred CCCCCCcEEEECCCCcchHHHHHHHHHHcCCCc-eeEeCCCHHHHHhCC
Q 018869 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR-VWVLDGGLPRWRASG 200 (349)
Q Consensus 153 gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~-V~~L~GG~~~W~~~G 200 (349)
+.+++++|||||..|. ++..+++.|+.+||+| |++|+||+.+|..+|
T Consensus 62 ~~~~~~~ivv~C~~G~-rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 62 APDPRTPIVVNCAGRT-RSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCCCCCeEEEECCCCc-hHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 7778899999998776 7889999999999988 999999999999765
No 12
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.84 E-value=1.2e-20 Score=156.61 Aligned_cols=109 Identities=23% Similarity=0.384 Sum_probs=83.1
Q ss_pred ccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCC--------------CCCCCCCCHH
Q 018869 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT--------------NLPHMLPSEE 143 (349)
Q Consensus 78 Is~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~--------------~~~~~lp~~~ 143 (349)
||++||+++++ ++.+||||| +..+|..||||||+|+|+..+..... .++.++++ .
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR---------~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVR---------SPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVS-G 69 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECC---------CHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHh-h
Confidence 68999999987 578999999 78999999999999999964321100 00011111 2
Q ss_pred HHHHHHH---HcCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHh
Q 018869 144 AFAAAVS---ALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 144 ~~~~~~~---~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~ 198 (349)
.+++.+. ..|++++++|||||+.++.+|.+++|+|+.+|| +|++|+||+.+|++
T Consensus 70 ~~~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 70 KLKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hHHHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 2334433 358999999999997555689999999999999 69999999999974
No 13
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.83 E-value=3.2e-20 Score=177.17 Aligned_cols=129 Identities=20% Similarity=0.298 Sum_probs=102.8
Q ss_pred CCCcccHHHHHHhcCCCCcEEEEeccC--CCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHH
Q 018869 74 KEPVVSVDWLHANLREPDLKVLDASWY--MPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~~~~iIDvR~~--~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~ 151 (349)
...+++.+++.+.+++++.+|||+|.. +.....++...+..||||||+|+|+..+.+.. +.+++.++|++.+..
T Consensus 188 ~~~~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~----~~~~~~~el~~~~~~ 263 (320)
T PLN02723 188 PHLVWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSS----QTLLPAEELKKRFEQ 263 (320)
T ss_pred ccceecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCC----CCCCCHHHHHHHHHh
Confidence 345789999999998778899999921 00000011223478999999999998765432 467889999999999
Q ss_pred cCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhC-CCCcccCC
Q 018869 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS-GYDVESSA 207 (349)
Q Consensus 152 ~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~-G~pv~~~~ 207 (349)
+|++++++||+||..|. +|++++++|+.+||+||++|+|||.+|... ..|++++.
T Consensus 264 ~gi~~~~~iv~yC~sG~-~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~~ 319 (320)
T PLN02723 264 EGISLDSPIVASCGTGV-TACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATST 319 (320)
T ss_pred cCCCCCCCEEEECCcHH-HHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCCC
Confidence 99999999999998765 899999999999999999999999999865 57877653
No 14
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.82 E-value=1.5e-19 Score=170.92 Aligned_cols=192 Identities=15% Similarity=0.210 Sum_probs=128.5
Q ss_pred CcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCC--C-C-----------CCCCC--C-HHHHHHHHHHcC
Q 018869 91 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT--N-L-----------PHMLP--S-EEAFAAAVSALG 153 (349)
Q Consensus 91 ~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~--~-~-----------~~~lp--~-~~~~~~~~~~~g 153 (349)
+.+||||| ++.||..||||||+|+|+........ . + ...+. . ++.+.+++...
T Consensus 2 ~~~liDVR---------sp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~- 71 (311)
T TIGR03167 2 FDPLIDVR---------SPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFA- 71 (311)
T ss_pred CCEEEECC---------CHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhc-
Confidence 45899999 88999999999999999954221100 0 0 00000 0 11233333332
Q ss_pred CCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHHhcCcccCC
Q 018869 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGP 233 (349)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
+++..|||||+.++.+|.+++|.|+.+|| +|++|+||+.+|...+.+.....+ .+
T Consensus 72 -~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~-----------------------~~ 126 (311)
T TIGR03167 72 -DGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEELP-----------------------QP 126 (311)
T ss_pred -CCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhccC-----------------------CC
Confidence 34455999997666689999999999999 699999999999998886655421 11
Q ss_pred cceeeccCCccccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccC-CCcccCcccccCCCCCCCCHHHHH
Q 018869 234 TTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVP-GSKCIPFPQMLDASQTLLPADELK 312 (349)
Q Consensus 234 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIP-GA~~ip~~~l~~~~~~l~~~~el~ 312 (349)
.++.. +.....+...+|.+.+...+.+|||+|+..+|.|. ..|||| |. -|-... | ...|-
T Consensus 127 ~~~~v-l~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs--------~fG~~~~~~--qpsq~~------f--e~~L~ 187 (311)
T TIGR03167 127 FPLIV-LGGMTGSGKTELLHALANAGAQVLDLEGLANHRGS--------SFGALGLGP--QPSQKR------F--ENALA 187 (311)
T ss_pred Cceec-cCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCc--------ccCCCCCCC--CCchHH------H--HHHHH
Confidence 22222 23345688999999998878899999999999775 459998 42 121111 1 12333
Q ss_pred HHHHHcCCCCCCCEEEEcCChHHHHH
Q 018869 313 KRFEQEGISLEKPVVTACGTGVTACI 338 (349)
Q Consensus 313 ~~~~~~~i~~~~~vivyC~~G~rA~~ 338 (349)
..+. .++++++|++-|.+..-+..
T Consensus 188 ~~l~--~~~~~~~i~~e~es~~ig~~ 211 (311)
T TIGR03167 188 EALR--RLDPGRPIFVEDESRRIGRV 211 (311)
T ss_pred HHHH--hCCCCceEEEEeCchhhccc
Confidence 3443 36778899999988766554
No 15
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.82 E-value=4.7e-20 Score=146.53 Aligned_cols=99 Identities=22% Similarity=0.329 Sum_probs=80.5
Q ss_pred CcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 018869 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (349)
Q Consensus 76 ~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~ 155 (349)
..|+++++.+++++++++||||| ++.+|+.||||||+|+|+..+... .+.+.+.+ ..+
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR---------~~~e~~~ghi~gA~~ip~~~~~~~----------~~~~~~~~---~~~ 59 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVR---------NDYEYDIGHFKGAVNPDVDTFREF----------PFWLDENL---DLL 59 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcC---------ChhhhhcCEeccccCCCcccHhHh----------HHHHHhhh---hhc
Confidence 46899999999987789999999 788999999999999999765321 11222222 236
Q ss_pred CCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 156 ~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
++++|||||..|. ++..+++.|+.+||++|++|+||+.+|.
T Consensus 60 ~~~~ivvyC~~G~-rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 60 KGKKVLMYCTGGI-RCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred CCCEEEEECCCch-hHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 8899999998776 7788888899999999999999999996
No 16
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.81 E-value=2.7e-19 Score=171.45 Aligned_cols=168 Identities=19% Similarity=0.191 Sum_probs=116.1
Q ss_pred cHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccC---------C-----CCCCCCCCHHH
Q 018869 79 SVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT---------T-----NLPHMLPSEEA 144 (349)
Q Consensus 79 s~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~---------~-----~~~~~lp~~~~ 144 (349)
..+++.+.+. ++.+||||| ++.||..||||||+|+|+....... . ...+.+++++.
T Consensus 4 ~~~~~~~~~~-~~~~lIDVR---------sp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l 73 (345)
T PRK11784 4 DAQDFRALFL-NDTPLIDVR---------SPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNI 73 (345)
T ss_pred cHHHHHHHHh-CCCEEEECC---------CHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhH
Confidence 3456665544 368999999 7899999999999999995432110 0 02234444322
Q ss_pred HHHHHHHcCC--CCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcccCCCcchhHhhhhhHHHH
Q 018869 145 FAAAVSALGL--ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAI 222 (349)
Q Consensus 145 ~~~~~~~~gi--~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~ 222 (349)
.+.+...++. +++++|||||..|+.+|.+++|+|+.+|| +|++|+||+.+|.+.+.+.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~~~-------------- 138 (345)
T PRK11784 74 AAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEEAP-------------- 138 (345)
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhhhc--------------
Confidence 2222222222 47889999997666789999999999999 599999999999988775444321
Q ss_pred HHHhcCcccCCcceeeccCCccccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCC
Q 018869 223 EKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPG 289 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPG 289 (349)
.+..|.. +.........++...+.+.+.++||.|+..+|.|. ..|+|++
T Consensus 139 ---------~~~~~iv-l~G~TGsGKT~iL~~L~~~~~~vlDlE~~aehrGS--------~fG~~~~ 187 (345)
T PRK11784 139 ---------AQFPLVV-LGGNTGSGKTELLQALANAGAQVLDLEGLANHRGS--------SFGRLGG 187 (345)
T ss_pred ---------ccCceEe-cCCCCcccHHHHHHHHHhcCCeEEECCchhhhccc--------cccCCCC
Confidence 1122222 23334577888988888778889999999999885 4577776
No 17
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.81 E-value=1.1e-19 Score=145.11 Aligned_cols=102 Identities=21% Similarity=0.243 Sum_probs=80.2
Q ss_pred ccHHHHHHhcCCC--CcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 018869 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (349)
Q Consensus 78 Is~~~L~~~l~~~--~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~ 155 (349)
||++||++++.++ +++|||+| +..+|..||||||+|+|+..+...... ...+|..+.|.. .
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR---------~~~e~~~ghIpgA~~ip~~~~~~~~~~-~~~~~~~~~~~~-------~ 63 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIR---------SSPDFRRGHIEGSINIPFSSVFLKEGE-LEQLPTVPRLEN-------Y 63 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECC---------CHHHHhCCccCCCEeCCHHHhcccccc-cccccchHHHHh-------h
Confidence 6899999999763 68999999 778999999999999999765422111 123444344433 2
Q ss_pred CCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 156 ~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
.+++||+||..|. ++.++++.|+.+||++|++|+||+.+|+
T Consensus 64 ~~~~vv~~c~~g~-~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 64 KGKIIVIVSHSHK-HAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred cCCeEEEEeCCCc-cHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 3688999998776 7889999999999999999999999996
No 18
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.80 E-value=4.2e-19 Score=142.84 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=88.5
Q ss_pred CCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 018869 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (349)
Q Consensus 75 ~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi 154 (349)
.+.+++++|.+.+++.+.+|||+| +..+|..||||||+|+|+. .|.+.+..+
T Consensus 4 ~~~is~~el~~~l~~~~~~ivDvR---------~~~e~~~ghi~gA~~ip~~-----------------~l~~~~~~~-- 55 (108)
T PRK00162 4 FECINVEQAHQKLQEGGAVLVDIR---------DPQSFAMGHAPGAFHLTND-----------------SLGAFMRQA-- 55 (108)
T ss_pred ccccCHHHHHHHHHcCCCEEEEcC---------CHHHHhcCCCCCCeECCHH-----------------HHHHHHHhc--
Confidence 456999999999876678999999 7899999999999999874 455555553
Q ss_pred CCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcccC
Q 018869 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESS 206 (349)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~~~ 206 (349)
++++++||||..|. ++..++..|+..||+||++|+||+.+|...++|++..
T Consensus 56 ~~~~~ivv~c~~g~-~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred CCCCCEEEEeCCCC-CHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 57889999998776 6888888999999999999999999999999998764
No 19
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=5.3e-19 Score=142.47 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=99.3
Q ss_pred CCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 018869 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~g 153 (349)
....++.++++++++.++.++|||| .++||..||||.+||||+..... ..+++ ..+|.+-++...
T Consensus 21 ~~~sv~~~qvk~L~~~~~~~llDVR---------epeEfk~gh~~~siNiPy~~~~~-----~~~l~-~~eF~kqvg~~k 85 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQHPDVVLLDVR---------EPEEFKQGHIPASINIPYMSRPG-----AGALK-NPEFLKQVGSSK 85 (136)
T ss_pred CcEEEEHHHHHHHhcCCCEEEEeec---------CHHHhhccCCcceEecccccccc-----ccccC-CHHHHHHhcccC
Confidence 4567999999999998889999999 78999999999999999964322 22333 457899999988
Q ss_pred CCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcc
Q 018869 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVE 204 (349)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~ 204 (349)
...++.|||||.+|. ++..|...|..+||+||.+|.|||.+|.+.++|..
T Consensus 86 p~~d~eiIf~C~SG~-Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 86 PPHDKEIIFGCASGV-RSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred CCCCCcEEEEeccCc-chhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 888999999999887 78899999999999999999999999999888753
No 20
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.79 E-value=5.5e-19 Score=139.75 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=82.8
Q ss_pred cccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 018869 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (349)
Q Consensus 77 lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~ 156 (349)
.|++++|.++++++ .+|||+| +.++|..||||||+|+|+..+.... ..+++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR---------~~~e~~~~hi~ga~~ip~~~~~~~~-------------------~~~~~ 53 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIR---------EPDEYLRERIPGARLVPLSQLESEG-------------------LPLVG 53 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECC---------CHHHHHhCcCCCCEECChhHhcccc-------------------cCCCC
Confidence 48999999988775 8899999 7899999999999999987653210 12467
Q ss_pred CCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCc
Q 018869 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (349)
Q Consensus 157 ~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv 203 (349)
+++||+||..|. ++..+++.|+.+|+++|++|+||+.+|...|+|+
T Consensus 54 ~~~iv~~c~~g~-~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 54 ANAIIFHCRSGM-RTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCcEEEEeCCCc-hHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 889999998765 7889999999999999999999999999998874
No 21
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.79 E-value=5.8e-19 Score=180.82 Aligned_cols=121 Identities=22% Similarity=0.375 Sum_probs=104.0
Q ss_pred CCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhh--------hcCCCCCceecCcccccccCCCCCCCCCCHHHH
Q 018869 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY--------QVAHIPGALFFDVDGVADRTTNLPHMLPSEEAF 145 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y--------~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~ 145 (349)
...+++.+|+++++++++++|||+| +.++| ..||||||+|+|+..+.+.. +.+++++++
T Consensus 145 ~~~~v~~e~v~~~l~~~~~~iIDaR---------~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~----~~lk~~~el 211 (610)
T PRK09629 145 DEPTATREYLQSRLGAADLAIWDAR---------APTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKA----RNLRIRQDM 211 (610)
T ss_pred CcccccHHHHHHhhCCCCcEEEECC---------CccccCCcccccccCCCCCCCeecCHHHhcCCC----CCCCCHHHH
Confidence 4568999999999988788999999 45566 47999999999997654432 357888999
Q ss_pred HHHHHHcCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhC-CCCcccCCC
Q 018869 146 AAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS-GYDVESSAS 208 (349)
Q Consensus 146 ~~~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~-G~pv~~~~~ 208 (349)
++++..+|++++++||+||+.|. +|+++||+|+.+|++||++|||||.+|... ++|+++...
T Consensus 212 ~~~~~~~Gi~~~~~VVvYC~sG~-rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~~ 274 (610)
T PRK09629 212 PEILRDLGITPDKEVITHCQTHH-RSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPTV 274 (610)
T ss_pred HHHHHHcCCCCCCCEEEECCCCh-HHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCCC
Confidence 99999999999999999998765 899999999999999999999999999874 789887653
No 22
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.79 E-value=7.3e-19 Score=137.47 Aligned_cols=99 Identities=32% Similarity=0.612 Sum_probs=83.0
Q ss_pred CCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEECCCCc
Q 018869 89 EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGI 168 (349)
Q Consensus 89 ~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~~~~VVvy~~~g~ 168 (349)
+++++|||+| +..+|..||||||+|+|+..+...... .. ...+++.+...++.++++|||||..|
T Consensus 2 ~~~~~ivDvR---------~~~e~~~~hi~ga~~i~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~iv~~c~~g- 66 (100)
T smart00450 2 DEKVVLLDVR---------SPEEYEGGHIPGAVNIPLSELLDRRGE----LD-ILEFEELLKRLGLDKDKPVVVYCRSG- 66 (100)
T ss_pred CCCEEEEECC---------CHHHhccCCCCCceeCCHHHhccCCCC----cC-HHHHHHHHHHcCCCCCCeEEEEeCCC-
Confidence 3468999999 789999999999999999876543221 11 12778888889999999999999655
Q ss_pred chHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCC
Q 018869 169 FSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202 (349)
Q Consensus 169 ~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~p 202 (349)
.++.++++.|+.+|+++|++|+||+.+|...|.|
T Consensus 67 ~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 67 NRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred cHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 4899999999999999999999999999988754
No 23
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.78 E-value=6.3e-19 Score=165.44 Aligned_cols=118 Identities=24% Similarity=0.346 Sum_probs=99.8
Q ss_pred CCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhh-----------hcCCCCCceecCcccccccCCCCCCCCCCH
Q 018869 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY-----------QVAHIPGALFFDVDGVADRTTNLPHMLPSE 142 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y-----------~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~ 142 (349)
+..+++.+++...+++++.+|||+| +.++| ..||||||+|+|+..+.+. ..+.++
T Consensus 151 ~~~~~~~~~v~~~~~~~~~~llD~R---------~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~-----~~~~~~ 216 (281)
T PRK11493 151 PEAVVRLTDVLLASHEKTAQIVDAR---------PAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE-----GELKTT 216 (281)
T ss_pred ccceecHHHHHHhhcCCCcEEEeCC---------CccceeeeccCCCCCcccccCCCcCCCCHHHhcCC-----CCcCCH
Confidence 3457777888877776678999999 55555 3799999999999876532 246678
Q ss_pred HHHHHHHHHcCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHh-CCCCcccC
Q 018869 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA-SGYDVESS 206 (349)
Q Consensus 143 ~~~~~~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~-~G~pv~~~ 206 (349)
+++++.+...|++++++||+||..|. +|+.+++.|+.+||+||++|+|||.+|.. .++|++++
T Consensus 217 ~~l~~~~~~~g~~~~~~ii~yC~~G~-~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 217 DELDAIFFGRGVSFDRPIIASCGSGV-TAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 89999999999999999999998765 89999999999999999999999999987 69999864
No 24
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.78 E-value=5.3e-19 Score=140.45 Aligned_cols=102 Identities=20% Similarity=0.293 Sum_probs=79.8
Q ss_pred ccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhh-hcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 018869 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY-QVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (349)
Q Consensus 78 Is~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y-~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~ 156 (349)
|+++++.+++++++.+|||+| +..+| ..||||||+|+|+..+....... ..+...++++
T Consensus 1 is~~el~~~~~~~~~~iiDvR---------~~~~~~~~ghIpga~~ip~~~~~~~~~~~-----------~~~~~~~~~~ 60 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVR---------DPRELERTGMIPGAFHAPRGMLEFWADPD-----------SPYHKPAFAE 60 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECC---------CHHHHHhcCCCCCcEEcccchhhhhcCcc-----------ccccccCCCC
Confidence 578999999887778999999 66677 67999999999986543211000 0111235788
Q ss_pred CCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCC
Q 018869 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (349)
Q Consensus 157 ~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G 200 (349)
+++|||||..|. ++.+++++|+.+|+++|++|+||+.+|..+|
T Consensus 61 ~~~ivv~c~~g~-~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 61 DKPFVFYCASGW-RSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCeEEEEcCCCC-cHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 999999998765 7899999999999999999999999998654
No 25
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.78 E-value=8.1e-19 Score=137.87 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=74.2
Q ss_pred ccHHHHHHhcCCC--CcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 018869 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (349)
Q Consensus 78 Is~~~L~~~l~~~--~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~ 155 (349)
||+++|++++.+. +++|||+| +..+|..||||||+|+|+..+.. ....+...
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR---------~~~e~~~ghipga~~ip~~~l~~-----------------~~~~~~~~ 54 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVR---------TPEEYEAGHLPGFRHTPGGQLVQ-----------------ETDHFAPV 54 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECC---------CHHHHHhCCCCCcEeCCHHHHHH-----------------HHHHhccc
Confidence 6788999988654 57899999 78999999999999999865422 11111112
Q ss_pred CCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHh
Q 018869 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 156 ~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~ 198 (349)
++++||+||..|. ++..+++.|+.+||+ |++|+||+.+|.+
T Consensus 55 ~~~~iv~~c~~G~-rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 55 RGARIVLADDDGV-RADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred CCCeEEEECCCCC-hHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 4688999998876 678888889999998 9999999999963
No 26
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.78 E-value=1.1e-18 Score=140.97 Aligned_cols=100 Identities=23% Similarity=0.359 Sum_probs=83.2
Q ss_pred CcccHHHHHHhcCC--CCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 018869 76 PVVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (349)
Q Consensus 76 ~lIs~~~L~~~l~~--~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~g 153 (349)
..|++++|.+++.+ ++.+|||+| +..+|..||||||+|+|...+.. .. ..+
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR---------~~~e~~~ghIpgA~~ip~~~l~~----------------~~--~~~ 60 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVR---------SAEAYARGHVPGAINLPHREICE----------------NA--TAK 60 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECC---------CHHHHhcCCCCCCEeCCHHHhhh----------------Hh--hhc
Confidence 45899999998865 358999999 77899999999999999865321 11 135
Q ss_pred CCCCCcEEEECCCCc-chHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCc
Q 018869 154 LENKDGLVVYDGKGI-FSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (349)
Q Consensus 154 i~~~~~VVvy~~~g~-~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv 203 (349)
++++++|||||..|. .++.++++.|+.+||+ |++|+||+.+|...|+|+
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 788999999998763 4799999999999995 999999999999999875
No 27
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.78 E-value=1.4e-18 Score=141.64 Aligned_cols=103 Identities=48% Similarity=0.834 Sum_probs=90.1
Q ss_pred cCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 018869 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 325 (349)
Q Consensus 246 i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~ 325 (349)
++.+++.+.+++++.+|||+|+..||.|....+......||||||+|+|+.++....+.+.+++++++.+...+++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 35678888887666899999999999886555444456699999999999988876677889999999999999999999
Q ss_pred EEEEcCChHHHHHHHHHHHhCcC
Q 018869 326 VVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 326 vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
||+||++|.+|+.+++.|+.+||
T Consensus 81 iv~yc~~g~~s~~~~~~l~~~G~ 103 (118)
T cd01449 81 VIVYCGSGVTACVLLLALELLGY 103 (118)
T ss_pred EEEECCcHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998
No 28
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.78 E-value=9.6e-19 Score=143.94 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=88.0
Q ss_pred CCCcccHHHHHHhcCC-CCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHH-HHHH
Q 018869 74 KEPVVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAA-AVSA 151 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~-~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~-~~~~ 151 (349)
....|+++++.+++.+ .+++|||+| +..+|..||||||+|+|+..+.+... .+.. ++..
T Consensus 6 ~~~~is~~el~~~~~~~~~~~ivDvR---------~~~e~~~~hIpgai~ip~~~~~~~~~----------~~~~~~~~~ 66 (122)
T cd01526 6 PEERVSVKDYKNILQAGKKHVLLDVR---------PKVHFEICRLPEAINIPLSELLSKAA----------ELKSLQELP 66 (122)
T ss_pred cccccCHHHHHHHHhCCCCeEEEEcC---------CHHHhhcccCCCCeEccHHHHhhhhh----------hhhhhhhcc
Confidence 4567999999998876 568899999 88999999999999999987654211 1111 3445
Q ss_pred cCCCCCCcEEEECCCCcchHHHHHHHHHHcCC-CceeEeCCCHHHHHhCCC
Q 018869 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGH-DRVWVLDGGLPRWRASGY 201 (349)
Q Consensus 152 ~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~-~~V~~L~GG~~~W~~~G~ 201 (349)
.+++++++||+||..|. ++..++..|+.+|| ++|++|+||+.+|..+..
T Consensus 67 ~~~~~~~~ivv~C~~G~-rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~ 116 (122)
T cd01526 67 LDNDKDSPIYVVCRRGN-DSQTAVRKLKELGLERFVRDIIGGLKAWADKVD 116 (122)
T ss_pred cccCCCCcEEEECCCCC-cHHHHHHHHHHcCCccceeeecchHHHHHHHhC
Confidence 67789999999998776 78899999999999 699999999999987644
No 29
>PLN02160 thiosulfate sulfurtransferase
Probab=99.77 E-value=2.8e-18 Score=143.85 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=90.6
Q ss_pred CCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCc--eecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 018869 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGA--LFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (349)
Q Consensus 75 ~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGA--i~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~ 152 (349)
.+.|+++++.+.+++ +.+||||| ++.+|..|||||| +|+|+..+... ..+.+.+...++ ..
T Consensus 14 ~~~i~~~e~~~~~~~-~~~lIDVR---------~~~E~~~ghIpgA~~iniP~~~~~~~-----~~l~~~~~~~~~-~~- 76 (136)
T PLN02160 14 VVSVDVSQAKTLLQS-GHQYLDVR---------TQDEFRRGHCEAAKIVNIPYMLNTPQ-----GRVKNQEFLEQV-SS- 76 (136)
T ss_pred eeEeCHHHHHHHHhC-CCEEEECC---------CHHHHhcCCCCCcceecccchhcCcc-----cccCCHHHHHHH-Hh-
Confidence 456999999998875 46899999 8899999999999 89997543211 123333322323 22
Q ss_pred CCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcccCC
Q 018869 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 207 (349)
Q Consensus 153 gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~~~~ 207 (349)
.++++++||+||..|. +|..++..|...||++|++|+|||.+|.+.|+|+.+..
T Consensus 77 ~~~~~~~IivyC~sG~-RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 77 LLNPADDILVGCQSGA-RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred ccCCCCcEEEECCCcH-HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 2477889999998776 89999999999999999999999999999999998865
No 30
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.77 E-value=2.5e-18 Score=136.60 Aligned_cols=94 Identities=22% Similarity=0.354 Sum_probs=77.7
Q ss_pred ccHHHHHHhcCCC--CcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC-
Q 018869 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL- 154 (349)
Q Consensus 78 Is~~~L~~~l~~~--~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi- 154 (349)
|++++|.++++.+ +.+|||+| +.++|..+|||||+|+|+..+. +++..++.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR---------~~~e~~~~hI~ga~~ip~~~~~-----------------~~~~~~~~~ 55 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVR---------EPEELEIAFLPGFLHLPMSEIP-----------------ERSKELDSD 55 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECC---------CHHHHhcCcCCCCEecCHHHHH-----------------HHHHHhccc
Confidence 7899999998764 58899999 7899999999999999986542 22222221
Q ss_pred CCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHh
Q 018869 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~ 198 (349)
+++++||+||..|. +|+++++.|..+||++|++|+||+.+|..
T Consensus 56 ~~~~~vv~~c~~g~-rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 56 NPDKDIVVLCHHGG-RSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred CCCCeEEEEeCCCc-hHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 56889999998765 78899999999999999999999999974
No 31
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.77 E-value=1.4e-18 Score=139.72 Aligned_cols=105 Identities=26% Similarity=0.527 Sum_probs=81.2
Q ss_pred cHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC--CCC
Q 018869 79 SVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG--LEN 156 (349)
Q Consensus 79 s~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~g--i~~ 156 (349)
|++||++++++++++|||+| +..+|..||||||+|+|+..+. ........+.+...+...+ +++
T Consensus 1 s~~el~~~l~~~~~~liD~R---------~~~~~~~~hI~ga~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 66 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVR---------SPEEYERGHIPGAVNIPFPSLD-----PDEPSLSEDKLDEFLKELGKKIDK 66 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEES---------SHHHHHHSBETTEEEEEGGGGS-----SSSSBCHHHHHHHHHHHHTHGSTT
T ss_pred CHHHHHhhhhCCCeEEEEeC---------CHHHHHcCCCCCCccccccccc-----cccccccccccccccccccccccc
Confidence 68999999977789999999 8999999999999999997661 1223344556665555554 488
Q ss_pred CCcEEEECCCCcchHHHH-----HHHHHHcCCCceeEeCCCHHHHHh
Q 018869 157 KDGLVVYDGKGIFSAARV-----WWMFRVFGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 157 ~~~VVvy~~~g~~~a~r~-----~~~L~~~G~~~V~~L~GG~~~W~~ 198 (349)
+++|||||..|. ++..+ +|+|+.+|+++|++|+|||.+|.+
T Consensus 67 ~~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 67 DKDIVFYCSSGW-RSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp TSEEEEEESSSC-HHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred cccceeeeeccc-ccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 899999996543 34443 445999999999999999999986
No 32
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.76 E-value=4.3e-18 Score=157.97 Aligned_cols=121 Identities=23% Similarity=0.438 Sum_probs=106.3
Q ss_pred CCCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhc----------CCCCCceecCcccccccCCCCCCCCCCH
Q 018869 73 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV----------AHIPGALFFDVDGVADRTTNLPHMLPSE 142 (349)
Q Consensus 73 ~~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~----------GHIPGAi~ip~~~l~~~~~~~~~~lp~~ 142 (349)
+....++.+.++..++.+..+|||+| ++++|.. ||||||+|+|+..+.+. ...+.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~liDaR---------~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~----~~~~~~~ 219 (285)
T COG2897 153 NVKAVVDATLVADALEVPAVLLIDAR---------SPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDD----GGLFKSP 219 (285)
T ss_pred CccccCCHHHHHHHhcCCCeEEEecC---------CHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcC----CCccCcH
Confidence 34568898999999988888999999 7788887 99999999999987763 3578889
Q ss_pred HHHHHHHHHcCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhC-CCCcccCC
Q 018869 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS-GYDVESSA 207 (349)
Q Consensus 143 ~~~~~~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~-G~pv~~~~ 207 (349)
++.+.++...||+++++||+||+.|. +|+..++.|+.+|+.++++|+|+|.+|... +.||+++.
T Consensus 220 ~~~~~l~~~~gi~~~~~vI~yCgsG~-~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 220 EEIARLYADAGIDPDKEVIVYCGSGV-RASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcCCch-HHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 99999999999999999999999887 799999999999999889999999999865 45887764
No 33
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.75 E-value=4.4e-18 Score=133.91 Aligned_cols=93 Identities=25% Similarity=0.374 Sum_probs=73.6
Q ss_pred HHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCc
Q 018869 80 VDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDG 159 (349)
Q Consensus 80 ~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~~~~ 159 (349)
++||.+. +++++|||+| +..+|..||||||+|+|+..+. ...+.++. ++. ++++++
T Consensus 3 ~~~l~~~--~~~~~iiDvR---------~~~~~~~~hIpgA~~ip~~~~~----------~~~~~~~~-~~~--~~~~~~ 58 (96)
T cd01529 3 ADWLGEH--EPGTALLDVR---------AEDEYAAGHLPGKRSIPGAALV----------LRSQELQA-LEA--PGRATR 58 (96)
T ss_pred hHHHhcC--CCCeEEEeCC---------CHHHHcCCCCCCcEeCCHHHhc----------CCHHHHHH-hhc--CCCCCC
Confidence 4566653 4568999999 7789999999999999986542 22344443 332 468899
Q ss_pred EEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 160 VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
||+||..|. ++.++++.|+.+||+||++|+||+.+|.
T Consensus 59 ivv~c~~g~-~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 95 (96)
T cd01529 59 YVLTCDGSL-LARFAAQELLALGGKPVALLDGGTSAWV 95 (96)
T ss_pred EEEEeCChH-HHHHHHHHHHHcCCCCEEEeCCCHHHhc
Confidence 999998665 6788888899999999999999999996
No 34
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.75 E-value=4.7e-18 Score=139.71 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=78.5
Q ss_pred cccHHHHHHhcCC------CCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcc-cccccCCCCCCCCCCHHHHHHHH
Q 018869 77 VVSVDWLHANLRE------PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVD-GVADRTTNLPHMLPSEEAFAAAV 149 (349)
Q Consensus 77 lIs~~~L~~~l~~------~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~-~l~~~~~~~~~~lp~~~~~~~~~ 149 (349)
.||++++.+++.+ ++++||||| +..+|..||||||+|+|+. .+.. .+.+..
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR---------~~~e~~~ghI~gA~~ip~~~~l~~-------------~~~~~~ 60 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCR---------FPYEYNGGHIKGAVNLSTKDELEE-------------FFLDKP 60 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECC---------CHHHHhCCcCCCCEeCCcHHHHHH-------------HHHHhh
Confidence 4899999999865 368999999 7889999999999999985 2211 111112
Q ss_pred HHcCCCCCCcEEEECCCCcchHHHHHHHHHHc------------CCCceeEeCCCHHHHH
Q 018869 150 SALGLENKDGLVVYDGKGIFSAARVWWMFRVF------------GHDRVWVLDGGLPRWR 197 (349)
Q Consensus 150 ~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~------------G~~~V~~L~GG~~~W~ 197 (349)
..++++++++|||||..++.+++++++.|+.+ ||.+|++|+||+.+|.
T Consensus 61 ~~~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 61 GVASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred cccccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 23567899999999973444899999999985 9999999999999984
No 35
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.75 E-value=9.4e-18 Score=130.47 Aligned_cols=89 Identities=22% Similarity=0.345 Sum_probs=75.0
Q ss_pred ccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 018869 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 157 (349)
Q Consensus 78 Is~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~~ 157 (349)
++++++.+++. ++.+|||+| +.++|..||||||+|+|+.. |++.++. ++++
T Consensus 1 ~~~~e~~~~~~-~~~~iiD~R---------~~~~~~~~hipgA~~ip~~~-----------------~~~~~~~--~~~~ 51 (90)
T cd01524 1 VQWHELDNYRA-DGVTLIDVR---------TPQEFEKGHIKGAINIPLDE-----------------LRDRLNE--LPKD 51 (90)
T ss_pred CCHHHHHHHhc-CCCEEEECC---------CHHHHhcCCCCCCEeCCHHH-----------------HHHHHHh--cCCC
Confidence 46889999884 467899999 88999999999999999753 3444443 4678
Q ss_pred CcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 158 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 158 ~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
++||+||..|. ++..+++.|+.+|+ +|++|+||+.+|+
T Consensus 52 ~~vvl~c~~g~-~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 52 KEIIVYCAVGL-RGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CcEEEEcCCCh-hHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 89999998764 78899999999999 8999999999996
No 36
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.74 E-value=9.8e-18 Score=131.46 Aligned_cols=91 Identities=33% Similarity=0.468 Sum_probs=77.9
Q ss_pred ccHHHHHHhcCC-CCcEEEEeccCCCCCCCCChhhhhc--CCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 018869 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQV--AHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (349)
Q Consensus 78 Is~~~L~~~l~~-~~~~iIDvR~~~~~~~~~~~~~y~~--GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi 154 (349)
|+++++++++++ .+.+|||+| +..+|.. ||||||+|+|+.. +.+.+.. +
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR---------~~~e~~~~~~hi~ga~~ip~~~-----------------~~~~~~~--~ 53 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVR---------DPASYAALPDHIPGAIHLDEDS-----------------LDDWLGD--L 53 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECC---------CHHHHhcccCCCCCCeeCCHHH-----------------HHHHHhh--c
Confidence 688999998876 468999999 7889999 9999999999864 3344433 5
Q ss_pred CCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
+++++|||||..|. ++.++++.|+.+||++|++|+||+.+|.
T Consensus 54 ~~~~~ivv~c~~g~-~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 54 DRDRPVVVYCYHGN-SSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred CCCCCEEEEeCCCC-hHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 78899999998554 8999999999999999999999999996
No 37
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.74 E-value=4.5e-17 Score=158.88 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=89.5
Q ss_pred CcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 018869 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (349)
Q Consensus 76 ~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~ 155 (349)
+.|+++++++++++ +.+|||+| +.++|..||||||+|+|+.. +.+.+..++++
T Consensus 3 ~~is~~el~~~l~~-~~~ivDvR---------~~~e~~~ghIpgAi~ip~~~-----------------l~~~~~~~~~~ 55 (376)
T PRK08762 3 REISPAEARARAAQ-GAVLIDVR---------EAHERASGQAEGALRIPRGF-----------------LELRIETHLPD 55 (376)
T ss_pred ceeCHHHHHHHHhC-CCEEEECC---------CHHHHhCCcCCCCEECCHHH-----------------HHHHHhhhcCC
Confidence 45899999999876 48999999 78999999999999999753 34445555567
Q ss_pred CCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcccCC
Q 018869 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 207 (349)
Q Consensus 156 ~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~~~~ 207 (349)
++++||+||..|. ++.++++.|+.+||+||++|+||+.+|...|+|++...
T Consensus 56 ~~~~IvvyC~~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 106 (376)
T PRK08762 56 RDREIVLICASGT-RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPR 106 (376)
T ss_pred CCCeEEEEcCCCc-HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCcccccc
Confidence 8999999998765 78999999999999999999999999999999988754
No 38
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.74 E-value=1e-17 Score=140.88 Aligned_cols=103 Identities=34% Similarity=0.558 Sum_probs=87.0
Q ss_pred cCHHHHHHHhh----cCCceEEeccCC--------CcccccCCCCCC-CCCccccCCCcccCcccccCCCCC----CCCH
Q 018869 246 WTLEQVKRNIE----EGTYQLVDARSK--------ARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQT----LLPA 308 (349)
Q Consensus 246 i~~~~v~~~~~----~~~~~lID~R~~--------~ey~G~~~~~~~-~~~~GHIPGA~~ip~~~l~~~~~~----l~~~ 308 (349)
++.++|.+.++ +++.+|||+|+. .+|.|..++|.. +.+.||||||+|+||.++.+.++. +.+.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 46789999887 467899999987 899987666532 346699999999999988765543 4567
Q ss_pred HHHHHHHHHcCCCCCCCEEEEcCC---hHHHHHHHHHHHhCcC
Q 018869 309 DELKKRFEQEGISLEKPVVTACGT---GVTACILALVLFPVFF 348 (349)
Q Consensus 309 ~el~~~~~~~~i~~~~~vivyC~~---G~rA~~~~~~L~~~g~ 348 (349)
++|++.|.+.||+++++||+||++ |.+|+.++++|+.+|+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~ 123 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGH 123 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCC
Confidence 899999999999999999999987 8999999999999997
No 39
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.73 E-value=2.1e-18 Score=163.61 Aligned_cols=179 Identities=13% Similarity=0.081 Sum_probs=123.3
Q ss_pred CCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 018869 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~g 153 (349)
..++-+++++++.+.. ...++|+| +...|..+||||++++|...+ +.+..++...
T Consensus 12 f~~i~~~~~~~~~l~~-~~~~~d~r---------g~i~~a~egIngtis~~~~~~--------------~~~~~~l~~~- 66 (314)
T PRK00142 12 YTPIEDPEAFRDEHLA-LCKSLGLK---------GRILVAEEGINGTVSGTIEQT--------------EAYMAWLKAD- 66 (314)
T ss_pred cccCCCHHHHHHHHHH-HHHHcCCe---------eEEEEcCCCceEEEEecHHHH--------------HHHHHHHhhC-
Confidence 4456778888887764 36789999 788999999999999997432 2334444331
Q ss_pred CCCCCcEE-EECCCCcchH----HHHHHHHHHcCCC-ceeEeCCCHHHHHhCCCCcccCCCcchhHhhhhhHHHHHHHhc
Q 018869 154 LENKDGLV-VYDGKGIFSA----ARVWWMFRVFGHD-RVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQ 227 (349)
Q Consensus 154 i~~~~~VV-vy~~~g~~~a----~r~~~~L~~~G~~-~V~~L~GG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~~~ 227 (349)
....+++ +++....... .++...|..+|++ ++.-+. ..
T Consensus 67 -~~~~~i~l~~~~~~~~~f~~l~~~~~~eLv~~G~d~~v~~~~-------------~~---------------------- 110 (314)
T PRK00142 67 -PRFADIRFKISEDDGHAFPRLSVKVRKEIVALGLDDDIDPLE-------------NV---------------------- 110 (314)
T ss_pred -cCCCCceEEeccccCCCcccceeeeeeeeeecCCCCCCCccc-------------cC----------------------
Confidence 1234443 3332111112 4555566666764 332111 01
Q ss_pred CcccCCcceeeccCCccccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCC
Q 018869 228 GQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLP 307 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~ 307 (349)
...++.+++.+.+++++.+|||+|++.|| ..||||||+|+|+.++.+.
T Consensus 111 ---------------~~~is~~el~~~l~~~~~vlIDVR~~~E~-----------~~GhI~GAi~ip~~~~~~~------ 158 (314)
T PRK00142 111 ---------------GTYLKPKEVNELLDDPDVVFIDMRNDYEY-----------EIGHFENAIEPDIETFREF------ 158 (314)
T ss_pred ---------------CcccCHHHHHHHhcCCCeEEEECCCHHHH-----------hcCcCCCCEeCCHHHhhhh------
Confidence 12467788888888888999999999999 6799999999999876421
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 308 ADELKKRFEQEGISLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 308 ~~el~~~~~~~~i~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
++.+.+ ..++.++++||+||.+|.|+..++.+|...||
T Consensus 159 ~~~l~~---~~~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf 196 (314)
T PRK00142 159 PPWVEE---NLDPLKDKKVVMYCTGGIRCEKASAWMKHEGF 196 (314)
T ss_pred HHHHHH---hcCCCCcCeEEEECCCCcHHHHHHHHHHHcCC
Confidence 223322 23467899999999999999999999999998
No 40
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.73 E-value=1.6e-17 Score=131.59 Aligned_cols=98 Identities=23% Similarity=0.158 Sum_probs=77.4
Q ss_pred ccHHHHHHhcCC-CCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCC
Q 018869 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (349)
Q Consensus 78 Is~~~L~~~l~~-~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~ 156 (349)
|++++|++++++ .+.+||||| +..+|+.||||||+|+|+..+.... + +...+.+.. +++
T Consensus 1 is~~el~~~l~~~~~~~liDvR---------~~~e~~~ghi~ga~~ip~~~~~~~~------~---~~~~~~~~~--~~~ 60 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVR---------NESDYERWKIDGENNTPYFDPYFDF------L---EIEEDILDQ--LPD 60 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeC---------CHHHHhhcccCCCcccccccchHHH------H---HhhHHHHhh--CCC
Confidence 578899998876 468999999 7899999999999999987642210 0 001223333 467
Q ss_pred CCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 157 ~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
+++|||||..|. ++..++..|+..||+ |+.|.||+.+|.
T Consensus 61 ~~~ivv~C~~G~-rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 61 DQEVTVICAKEG-SSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCeEEEEcCCCC-cHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 899999998776 789999999999998 999999999995
No 41
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.73 E-value=1.9e-17 Score=140.25 Aligned_cols=96 Identities=30% Similarity=0.385 Sum_probs=80.3
Q ss_pred HHHhcCC-CCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEE
Q 018869 83 LHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLV 161 (349)
Q Consensus 83 L~~~l~~-~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~~~~VV 161 (349)
|.+++.. .+++|||+| +..+|..||||||+|+|.. +|.+.+..++ ++++||
T Consensus 2 l~~~l~~~~~~~ivDvR---------~~~e~~~gHIpgAi~~~~~-----------------~l~~~l~~l~--~~~~vV 53 (145)
T cd01535 2 LAAWLGEGGQTAVVDVT---------ASANYVKRHIPGAWWVLRA-----------------QLAQALEKLP--AAERYV 53 (145)
T ss_pred hHHHHhCCCCeEEEECC---------CHHHHHcCCCCCceeCCHH-----------------HHHHHHHhcC--CCCCEE
Confidence 3444533 358999999 7889999999999999753 5666677654 578899
Q ss_pred EECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcccCC
Q 018869 162 VYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 207 (349)
Q Consensus 162 vy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~~~~ 207 (349)
|||..+. .|..+++.|+..|+++|++|+||+.+|.+.|+|++++.
T Consensus 54 v~c~~g~-~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~ 98 (145)
T cd01535 54 LTCGSSL-LARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGE 98 (145)
T ss_pred EEeCCCh-HHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCC
Confidence 9998764 78999999999999999999999999999999999864
No 42
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.72 E-value=2.1e-17 Score=135.06 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=83.8
Q ss_pred ccHHHHHHhcCC-CCcEEEEeccCCCCCCCCChhhhh-cCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCC
Q 018869 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQ-VAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (349)
Q Consensus 78 Is~~~L~~~l~~-~~~~iIDvR~~~~~~~~~~~~~y~-~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~ 155 (349)
||++++++++++ ++.+|||+| +..+|+ .||||||+|+|+..+... .++ ..|...+..+. +
T Consensus 1 is~~el~~~l~~~~~~~vIDvR---------~~~e~~~~ghIpgA~~ip~~~~~~~-------~~~-~~~~~~l~~~~-~ 62 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVR---------TEAEWKFVGGVPDAVHVAWQVYPDM-------EIN-PNFLAELEEKV-G 62 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECC---------CHHHHhcccCCCCceecchhhcccc-------ccC-HHHHHHHHhhC-C
Confidence 688999999877 578999999 789999 999999999999765321 122 24555555543 6
Q ss_pred CCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhC
Q 018869 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (349)
Q Consensus 156 ~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~ 199 (349)
++++||+||..|. ++..+++.|+.+||+||+.|.||+.+|...
T Consensus 63 ~~~~ivv~C~~G~-rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 63 KDRPVLLLCRSGN-RSIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred CCCeEEEEcCCCc-cHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 8899999998764 899999999999999999999999999753
No 43
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.71 E-value=3.2e-17 Score=133.00 Aligned_cols=100 Identities=22% Similarity=0.315 Sum_probs=77.2
Q ss_pred CcccHHHHHHhcCC--CCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 018869 76 PVVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (349)
Q Consensus 76 ~lIs~~~L~~~l~~--~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~g 153 (349)
+.|++++|++++.. ++++|||+| +. +|..||||||+|+|+..+.. .+.++....+
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR---------~~-e~~~~hi~gA~~ip~~~l~~-------------~~~~~~~~~~ 58 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVR---------DE-DYAGGHIKGSWHYPSTRFKA-------------QLNQLVQLLS 58 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcC---------Cc-ccCCCcCCCCEecCHHHHhh-------------CHHHHHHHHh
Confidence 46899999999866 457899999 67 99999999999999986532 2344444455
Q ss_pred CCCCCcEEEECCCCcchHHHHHHHHHH--------cCCCceeEeCCCHHHHHh
Q 018869 154 LENKDGLVVYDGKGIFSAARVWWMFRV--------FGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~r~~~~L~~--------~G~~~V~~L~GG~~~W~~ 198 (349)
++++++|||||..++.++..++..|.. .|+.||++|+||+.+|.+
T Consensus 59 ~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~ 111 (113)
T cd01531 59 GSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWES 111 (113)
T ss_pred cCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHh
Confidence 678899999997444456666554432 499999999999999985
No 44
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.70 E-value=7.8e-17 Score=125.90 Aligned_cols=87 Identities=23% Similarity=0.280 Sum_probs=68.5
Q ss_pred hcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEECC
Q 018869 86 NLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG 165 (349)
Q Consensus 86 ~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~~~~VVvy~~ 165 (349)
++++++++|||+| +..+|..||||||+|+|+..+... ....+ .+++++|||||.
T Consensus 5 ~~~~~~~~liDvR---------~~~e~~~~hi~ga~~ip~~~~~~~----------------~~~~~-~~~~~~ivl~c~ 58 (92)
T cd01532 5 LLAREEIALIDVR---------EEDPFAQSHPLWAANLPLSRLELD----------------AWVRI-PRRDTPIVVYGE 58 (92)
T ss_pred hhcCCCeEEEECC---------CHHHHhhCCcccCeeCCHHHHHhh----------------hHhhC-CCCCCeEEEEeC
Confidence 4455678999999 789999999999999998653211 11111 135789999998
Q ss_pred CCcc-hHHHHHHHHHHcCCCceeEeCCCHHHHHh
Q 018869 166 KGIF-SAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 166 ~g~~-~a~r~~~~L~~~G~~~V~~L~GG~~~W~~ 198 (349)
.|.. .+.++++.|+..||++|++|+||+.+|.+
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 7753 27899999999999999999999999963
No 45
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.68 E-value=1.5e-16 Score=129.00 Aligned_cols=98 Identities=20% Similarity=0.323 Sum_probs=72.8
Q ss_pred cccHHHHHHhcCCC------CcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHH
Q 018869 77 VVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS 150 (349)
Q Consensus 77 lIs~~~L~~~l~~~------~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~ 150 (349)
.|++++|++++.++ +++||||| +. +|..||||||+|+|+..+.. .+.+.+.
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR---------~~-ef~~ghipgAi~ip~~~~~~-------------~~~~~~~ 59 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLR---------RD-DYEGGHIKGSINLPAQSCYQ-------------TLPQVYA 59 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECC---------ch-hcCCCcccCceecchhHHHH-------------HHHHHHH
Confidence 58999999999764 58899999 67 99999999999999876432 2223333
Q ss_pred HcCCCCCCcEEEECCCCcchHHHHHHH-HH---HcCC--CceeEeCCCHHHHH
Q 018869 151 ALGLENKDGLVVYDGKGIFSAARVWWM-FR---VFGH--DRVWVLDGGLPRWR 197 (349)
Q Consensus 151 ~~gi~~~~~VVvy~~~g~~~a~r~~~~-L~---~~G~--~~V~~L~GG~~~W~ 197 (349)
.+...+.++||+||..++.++.+++.. ++ ..|+ .++++|+||+.+|.
T Consensus 60 ~~~~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 60 LFSLAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HhhhcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 333345678999998755567776633 33 3465 68999999999995
No 46
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.68 E-value=1.4e-16 Score=122.35 Aligned_cols=88 Identities=32% Similarity=0.559 Sum_probs=73.0
Q ss_pred HHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEEE
Q 018869 83 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVV 162 (349)
Q Consensus 83 L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~~~~VVv 162 (349)
+++++..++.+|||+| +..+|..||||||+|+|+..+... ....+++++++|||
T Consensus 2 ~~~~~~~~~~~iiD~R---------~~~~~~~~~i~ga~~~~~~~~~~~-----------------~~~~~~~~~~~vv~ 55 (89)
T cd00158 2 LKELLDDEDAVLLDVR---------EPEEYAAGHIPGAINIPLSELEER-----------------AALLELDKDKPIVV 55 (89)
T ss_pred hHHHhcCCCeEEEECC---------CHHHHhccccCCCEecchHHHhhH-----------------HHhhccCCCCeEEE
Confidence 3455556679999999 788999999999999998753221 13456789999999
Q ss_pred ECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 163 YDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 163 y~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
||..+. ++.++++.|+.+|+++|++|+||+.+|.
T Consensus 56 ~c~~~~-~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 56 YCRSGN-RSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EeCCCc-hHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 998764 7999999999999999999999999994
No 47
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.67 E-value=8.3e-17 Score=134.14 Aligned_cols=109 Identities=27% Similarity=0.388 Sum_probs=81.1
Q ss_pred cccHHHHHHhcCC--CCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCC---C--CCCCCCCHHHHHHHH
Q 018869 77 VVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT---N--LPHMLPSEEAFAAAV 149 (349)
Q Consensus 77 lIs~~~L~~~l~~--~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~---~--~~~~lp~~~~~~~~~ 149 (349)
+|+++||.++++. ++++|||+| +..+|..||||||+|+|+..+..... . ...+++..+.++++.
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR---------~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 71 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCR---------PFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLR 71 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECC---------CHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHh
Confidence 4899999999975 468999999 78899999999999999986432110 0 012455555544433
Q ss_pred HHcCCCCCCcEEEECCCCc-----chHHHHHHHHHHcCC-----CceeEeCCCHHHHHh
Q 018869 150 SALGLENKDGLVVYDGKGI-----FSAARVWWMFRVFGH-----DRVWVLDGGLPRWRA 198 (349)
Q Consensus 150 ~~~gi~~~~~VVvy~~~g~-----~~a~r~~~~L~~~G~-----~~V~~L~GG~~~W~~ 198 (349)
. . ++++|||||..+. ..+++++|+++.+|+ .+|++|+||+.+|.+
T Consensus 72 ~-~---~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 72 R-G---ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred c-C---CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 3 2 6789999998664 346777788777776 689999999999975
No 48
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.67 E-value=1.1e-16 Score=127.99 Aligned_cols=89 Identities=25% Similarity=0.413 Sum_probs=77.5
Q ss_pred CHHHHHHHhh-cCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 018869 247 TLEQVKRNIE-EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 325 (349)
Q Consensus 247 ~~~~v~~~~~-~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~ 325 (349)
+.+++.+.++ .++.+|||+|++.|| ..||||||+|+|+.++.+. ...+++++++.+...+++++++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~-----------~~ghIpgA~~ip~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 68 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEEL-----------KTGKIPGAINIPLSSLPDA--LALSEEEFEKKYGFPKPSKDKE 68 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHH-----------hcCcCCCcEEechHHhhhh--hCCCHHHHHHHhcccCCCCCCe
Confidence 4677888877 667899999999999 6799999999999886432 3467888999998888889999
Q ss_pred EEEEcCChHHHHHHHHHHHhCcC
Q 018869 326 VVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 326 vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
||+||++|.+|..++..|..+||
T Consensus 69 ivv~c~~g~~s~~~~~~l~~~G~ 91 (106)
T cd01519 69 LIFYCKAGVRSKAAAELARSLGY 91 (106)
T ss_pred EEEECCCcHHHHHHHHHHHHcCC
Confidence 99999999999999999999998
No 49
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.65 E-value=3.7e-16 Score=128.21 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=82.0
Q ss_pred cCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCC----CCCCCCHHHHHHHHHHcCCC
Q 018869 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA----SQTLLPADELKKRFEQEGIS 321 (349)
Q Consensus 246 i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~----~~~l~~~~el~~~~~~~~i~ 321 (349)
++.+++.+.+++++.+|||+|++.+|.+ .......||||||+|+|+.++... .+.+.+.+++++.+...+++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~----~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRD----GRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGIS 77 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCc----hhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 6788999988876788999999944411 001126799999999999887652 45788999999999998999
Q ss_pred CCCCEEEEcCC-hHHHHHHHHHHHhCcC
Q 018869 322 LEKPVVTACGT-GVTACILALVLFPVFF 348 (349)
Q Consensus 322 ~~~~vivyC~~-G~rA~~~~~~L~~~g~ 348 (349)
++++||+||++ |.+|+.++..|+.+||
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~ 105 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGH 105 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCC
Confidence 99999999999 5999999999999997
No 50
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.64 E-value=8.6e-16 Score=145.82 Aligned_cols=103 Identities=18% Similarity=0.270 Sum_probs=85.1
Q ss_pred CCCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 018869 73 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (349)
Q Consensus 73 ~~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~ 152 (349)
.....|+++++.+++.+++++||||| +..||..||||||+|+|+..+.+. ++.+ ...+
T Consensus 109 ~~~~~is~~el~~~l~~~~~vlIDVR---------~~~E~~~GhI~GAi~ip~~~~~~~----------~~~l---~~~~ 166 (314)
T PRK00142 109 NVGTYLKPKEVNELLDDPDVVFIDMR---------NDYEYEIGHFENAIEPDIETFREF----------PPWV---EENL 166 (314)
T ss_pred cCCcccCHHHHHHHhcCCCeEEEECC---------CHHHHhcCcCCCCEeCCHHHhhhh----------HHHH---HHhc
Confidence 34568999999999988889999999 788999999999999999765321 1111 2345
Q ss_pred CCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHh
Q 018869 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 153 gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~ 198 (349)
++.++++||+||.+|. ++..++..|+..||++|++|+||+.+|..
T Consensus 167 ~~~kdk~IvvyC~~G~-Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~ 211 (314)
T PRK00142 167 DPLKDKKVVMYCTGGI-RCEKASAWMKHEGFKEVYQLEGGIITYGE 211 (314)
T ss_pred CCCCcCeEEEECCCCc-HHHHHHHHHHHcCCCcEEEecchHHHHHH
Confidence 6678899999998766 78888888999999999999999999975
No 51
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.64 E-value=4.5e-16 Score=123.56 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=68.8
Q ss_pred ccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCC
Q 018869 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 324 (349)
Q Consensus 245 ~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~ 324 (349)
.++.+++.+.+++++.+|||+|++.|| ..||||||+|+|+.++.+. .+.+.+.+. +++++
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~-----------~~ghi~gA~~ip~~~~~~~------~~~~~~~~~---~~~~~ 62 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEY-----------DIGHFKGAVNPDVDTFREF------PFWLDENLD---LLKGK 62 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhh-----------hcCEeccccCCCcccHhHh------HHHHHhhhh---hcCCC
Confidence 478889998888777899999999999 6799999999999765321 123333322 47889
Q ss_pred CEEEEcCChHHHHHHHHHHHhCcC
Q 018869 325 PVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 325 ~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+||+||.+|.||..++..|...||
T Consensus 63 ~ivvyC~~G~rs~~a~~~L~~~G~ 86 (101)
T cd01518 63 KVLMYCTGGIRCEKASAYLKERGF 86 (101)
T ss_pred EEEEECCCchhHHHHHHHHHHhCC
Confidence 999999999999999999999998
No 52
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.63 E-value=1.1e-15 Score=121.51 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=68.6
Q ss_pred CcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEECCCCcch
Q 018869 91 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFS 170 (349)
Q Consensus 91 ~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~~~~VVvy~~~g~~~ 170 (349)
+..+||+| +.++|..||||||+|+|+. ++.+.+..++.+++++|||||..|. +
T Consensus 18 ~~~lIDvR---------~~~ef~~ghIpgAinip~~-----------------~l~~~l~~~~~~~~~~vvlyC~~G~-r 70 (101)
T TIGR02981 18 AEHWIDVR---------IPEQYQQEHIQGAINIPLK-----------------EIKEHIATAVPDKNDTVKLYCNAGR-Q 70 (101)
T ss_pred CCEEEECC---------CHHHHhcCCCCCCEECCHH-----------------HHHHHHHHhCCCCCCeEEEEeCCCH-H
Confidence 56799999 8899999999999999985 3455566666678889999998775 7
Q ss_pred HHHHHHHHHHcCCCceeEeCCCHHHHHh
Q 018869 171 AARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 171 a~r~~~~L~~~G~~~V~~L~GG~~~W~~ 198 (349)
+..++..|+.+||++|.++ ||+.+|.-
T Consensus 71 S~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 71 SGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 9999999999999999986 99999963
No 53
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.63 E-value=1.5e-15 Score=121.21 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=69.8
Q ss_pred CCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEECCCCcc
Q 018869 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIF 169 (349)
Q Consensus 90 ~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~~~~VVvy~~~g~~ 169 (349)
.+-+|||+| +.++|+.||||||+|+|+. ++.+.++.++.+++++||+||..|.
T Consensus 19 ~~~~lIDvR---------~~~ef~~ghIpGAiniP~~-----------------~l~~~l~~l~~~~~~~IVlyC~~G~- 71 (104)
T PRK10287 19 AAEHWIDVR---------VPEQYQQEHVQGAINIPLK-----------------EVKERIATAVPDKNDTVKLYCNAGR- 71 (104)
T ss_pred CCCEEEECC---------CHHHHhcCCCCccEECCHH-----------------HHHHHHHhcCCCCCCeEEEEeCCCh-
Confidence 456799999 8999999999999999975 4556777778888899999998765
Q ss_pred hHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 170 SAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 170 ~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
+|..+++.|..+||++|++ .||+.+|.
T Consensus 72 rS~~aa~~L~~~G~~~v~~-~GG~~~~~ 98 (104)
T PRK10287 72 QSGQAKEILSEMGYTHAEN-AGGLKDIA 98 (104)
T ss_pred HHHHHHHHHHHcCCCeEEe-cCCHHHHh
Confidence 8999999999999999987 69999996
No 54
>PRK01415 hypothetical protein; Validated
Probab=99.62 E-value=2e-15 Score=137.71 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=84.3
Q ss_pred CCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHH-Hc
Q 018869 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS-AL 152 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~-~~ 152 (349)
..+.|+++++.+++++++++||||| ...||..||||||+|+|+..+.+ |.+++. ..
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVR---------n~~E~~~Ghi~gAinip~~~f~e--------------~~~~~~~~~ 166 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTR---------NDYEVEVGTFKSAINPNTKTFKQ--------------FPAWVQQNQ 166 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECC---------CHHHHhcCCcCCCCCCChHHHhh--------------hHHHHhhhh
Confidence 3567999999999998889999999 78999999999999999876532 222221 12
Q ss_pred CCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhC
Q 018869 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (349)
Q Consensus 153 gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~ 199 (349)
.++++++||+||.+|. ++..++..|+..||++|+.|.||+.+|.+.
T Consensus 167 ~~~k~k~Iv~yCtgGi-Rs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 167 ELLKGKKIAMVCTGGI-RCEKSTSLLKSIGYDEVYHLKGGILQYLED 212 (247)
T ss_pred hhcCCCeEEEECCCCh-HHHHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence 3468899999997665 899999999999999999999999999864
No 55
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.62 E-value=1.1e-15 Score=123.08 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=68.0
Q ss_pred ccCHHHHHHHhhcC-CceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCC
Q 018869 245 IWTLEQVKRNIEEG-TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 323 (349)
Q Consensus 245 ~i~~~~v~~~~~~~-~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~ 323 (349)
.++.+++.+.++++ +.+|||+|++.|| ..||||||+|+|+.++ ...+.+.+.+++
T Consensus 11 ~i~~~~l~~~~~~~~~~~liDvR~~~e~-----------~~ghIpgainip~~~l-------------~~~~~~l~~~~~ 66 (109)
T cd01533 11 SVSADELAALQARGAPLVVLDGRRFDEY-----------RKMTIPGSVSCPGAEL-------------VLRVGELAPDPR 66 (109)
T ss_pred cCCHHHHHHHHhcCCCcEEEeCCCHHHH-----------hcCcCCCceeCCHHHH-------------HHHHHhcCCCCC
Confidence 58899999988754 5789999999999 6799999999998654 334555455678
Q ss_pred CCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 324 KPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 324 ~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
++||+||++|.||..++..|+.+||
T Consensus 67 ~~ivv~C~~G~rs~~a~~~L~~~G~ 91 (109)
T cd01533 67 TPIVVNCAGRTRSIIGAQSLINAGL 91 (109)
T ss_pred CeEEEECCCCchHHHHHHHHHHCCC
Confidence 9999999999999999999999998
No 56
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.61 E-value=1.1e-15 Score=126.75 Aligned_cols=91 Identities=22% Similarity=0.329 Sum_probs=70.0
Q ss_pred cCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCC--C-CC--------------CCH
Q 018869 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS--Q-TL--------------LPA 308 (349)
Q Consensus 246 i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~--~-~l--------------~~~ 308 (349)
|+.+|+++.++ ++.+|||+|++.|| ..||||||+|+|+..+.... + .+ ...
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~-----------~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEF-----------FEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVS 68 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHh-----------ccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHh
Confidence 46788988887 56899999999999 67999999999996543211 0 00 111
Q ss_pred HHHHHHHHH---cCCCCCCCEEEEcC-ChHHHHHHHHHHHhCcC
Q 018869 309 DELKKRFEQ---EGISLEKPVVTACG-TGVTACILALVLFPVFF 348 (349)
Q Consensus 309 ~el~~~~~~---~~i~~~~~vivyC~-~G~rA~~~~~~L~~~g~ 348 (349)
.++++.+.. .+++++++||+||+ +|.||+.++..|+.+||
T Consensus 69 ~~~~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~ 112 (128)
T cd01520 69 GKLKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI 112 (128)
T ss_pred hhHHHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC
Confidence 344554443 48999999999997 79999999999999998
No 57
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.60 E-value=4.9e-15 Score=118.73 Aligned_cols=99 Identities=28% Similarity=0.471 Sum_probs=79.8
Q ss_pred HHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCC-ceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCc
Q 018869 81 DWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPG-ALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDG 159 (349)
Q Consensus 81 ~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPG-Ai~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~~~~ 159 (349)
.........++.+||||| ...+|+.+|||| ++|+|+..+....... ..+++++
T Consensus 10 ~~~~~~~~~~~~~liDvR---------~~~e~~~~~i~~~~~~ip~~~~~~~~~~~-----------------~~~~~~~ 63 (110)
T COG0607 10 DEAALLLAGEDAVLLDVR---------EPEEYERGHIPGAAINIPLSELKAAENLL-----------------ELPDDDP 63 (110)
T ss_pred HHHHHhhccCCCEEEecc---------ChhHhhhcCCCcceeeeecccchhhhccc-----------------ccCCCCe
Confidence 333344445579999999 669999999999 9999998765431100 0468899
Q ss_pred EEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCCcccC
Q 018869 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESS 206 (349)
Q Consensus 160 VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~pv~~~ 206 (349)
+||||..|. ++..++..|+..||++++.++||+.+|...++|++..
T Consensus 64 ivv~C~~G~-rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 64 IVVYCASGV-RSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred EEEEeCCCC-ChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence 999998876 7899999999999999999999999999999987653
No 58
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.60 E-value=2.7e-15 Score=138.54 Aligned_cols=102 Identities=25% Similarity=0.339 Sum_probs=80.4
Q ss_pred CCCcccHHHHHHhcCC------CCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHH
Q 018869 74 KEPVVSVDWLHANLRE------PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAA 147 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~------~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~ 147 (349)
....|+++++.+++.+ ++.+||||| +..||+.||||||+|+|+..+... ++.+.+
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR---------~~~E~~~Ghi~GAiniPl~~f~~~----------~~~l~~ 168 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTR---------NAFEVDVGTFDGALDYRIDKFTEF----------PEALAA 168 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECC---------CHHHHccCccCCCEeCChhHhhhh----------HHHHHh
Confidence 3467999999988765 247999999 789999999999999999765321 111222
Q ss_pred HHHHcCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHh
Q 018869 148 AVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 148 ~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~ 198 (349)
.... .++++||+||.+|. ++..++..|+..||+||+.|.||+.+|.+
T Consensus 169 ~~~~---~kdk~IvvyC~~G~-Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~ 215 (257)
T PRK05320 169 HRAD---LAGKTVVSFCTGGI-RCEKAAIHMQEVGIDNVYQLEGGILKYFE 215 (257)
T ss_pred hhhh---cCCCeEEEECCCCH-HHHHHHHHHHHcCCcceEEeccCHHHHHH
Confidence 2221 26789999998765 89999999999999999999999999975
No 59
>PLN02160 thiosulfate sulfurtransferase
Probab=99.57 E-value=8.7e-15 Score=122.70 Aligned_cols=89 Identities=17% Similarity=0.254 Sum_probs=73.6
Q ss_pred ccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCC--cccCcccccCCCCCCCCHHHHHHHHHHcCCCC
Q 018869 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGS--KCIPFPQMLDASQTLLPADELKKRFEQEGISL 322 (349)
Q Consensus 245 ~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA--~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~ 322 (349)
.++.+++.+.+++ +.+|||+|++.|| ..|||||| +|+|+..+. ....+++.+.+.++.. .+++
T Consensus 16 ~i~~~e~~~~~~~-~~~lIDVR~~~E~-----------~~ghIpgA~~iniP~~~~~-~~~~l~~~~~~~~~~~--~~~~ 80 (136)
T PLN02160 16 SVDVSQAKTLLQS-GHQYLDVRTQDEF-----------RRGHCEAAKIVNIPYMLNT-PQGRVKNQEFLEQVSS--LLNP 80 (136)
T ss_pred EeCHHHHHHHHhC-CCEEEECCCHHHH-----------hcCCCCCcceecccchhcC-cccccCCHHHHHHHHh--ccCC
Confidence 5788999888875 4689999999999 67999999 899986653 4456777666655443 3678
Q ss_pred CCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 323 EKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 323 ~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+++||+||++|.||..++..|...||
T Consensus 81 ~~~IivyC~sG~RS~~Aa~~L~~~G~ 106 (136)
T PLN02160 81 ADDILVGCQSGARSLKATTELVAAGY 106 (136)
T ss_pred CCcEEEECCCcHHHHHHHHHHHHcCC
Confidence 89999999999999999999999998
No 60
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.56 E-value=6.6e-15 Score=116.53 Aligned_cols=85 Identities=11% Similarity=0.176 Sum_probs=66.7
Q ss_pred cCHHHHHHHhhc-CCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCC
Q 018869 246 WTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 324 (349)
Q Consensus 246 i~~~~v~~~~~~-~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~ 324 (349)
++.+++.+.+++ .+.+|||+|++.|| ..||||||+|+|+..+... + .+.+.+.+. .+++++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~-----------~~ghi~ga~~ip~~~~~~~---~--~~~~~~~~~--~~~~~~ 62 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDY-----------ERWKIDGENNTPYFDPYFD---F--LEIEEDILD--QLPDDQ 62 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHH-----------hhcccCCCcccccccchHH---H--HHhhHHHHh--hCCCCC
Confidence 456788888775 35789999999999 6799999999999776431 0 011122333 367899
Q ss_pred CEEEEcCChHHHHHHHHHHHhCcC
Q 018869 325 PVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 325 ~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+||+||.+|.||..++..|+..||
T Consensus 63 ~ivv~C~~G~rs~~aa~~L~~~G~ 86 (100)
T cd01523 63 EVTVICAKEGSSQFVAELLAERGY 86 (100)
T ss_pred eEEEEcCCCCcHHHHHHHHHHcCc
Confidence 999999999999999999999998
No 61
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.56 E-value=1.3e-14 Score=142.30 Aligned_cols=101 Identities=21% Similarity=0.346 Sum_probs=83.5
Q ss_pred CCCcccHHHHHHhcCCC-CcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 018869 74 KEPVVSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~-~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~ 152 (349)
....|+++++++++++. +++|||+| +.++|..||||||+|+|+..+... +. +.
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR---------~~~ef~~ghIpGAinip~~~l~~~-----------~~----~~-- 338 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVR---------EPVEWDIVHIPGAQLIPKSEILSG-----------EA----LA-- 338 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECC---------CHHHHhcCCCCCCEEcChHHhcch-----------hH----Hh--
Confidence 45679999999998754 57899999 789999999999999998764321 11 11
Q ss_pred CCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCC
Q 018869 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGY 201 (349)
Q Consensus 153 gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~ 201 (349)
.++++++|||||..|. +|.++++.|+..||++|++|+||+.+|..+..
T Consensus 339 ~l~~d~~iVvyC~~G~-rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~ 386 (392)
T PRK07878 339 KLPQDRTIVLYCKTGV-RSAEALAALKKAGFSDAVHLQGGVVAWAKQVD 386 (392)
T ss_pred hCCCCCcEEEEcCCCh-HHHHHHHHHHHcCCCcEEEecCcHHHHHHhcC
Confidence 3578899999998765 79999999999999999999999999987643
No 62
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.56 E-value=4.3e-15 Score=122.16 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=71.2
Q ss_pred cccCHHHHHHHhhc-CCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHH-HHHHcCCC
Q 018869 244 LIWTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKK-RFEQEGIS 321 (349)
Q Consensus 244 ~~i~~~~v~~~~~~-~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~-~~~~~~i~ 321 (349)
..++.+++.+.+++ .+.+|||+|++.|| ..||||||+|+|+..+.+.... +.. .+...+++
T Consensus 8 ~~is~~el~~~~~~~~~~~ivDvR~~~e~-----------~~~hIpgai~ip~~~~~~~~~~------~~~~~~~~~~~~ 70 (122)
T cd01526 8 ERVSVKDYKNILQAGKKHVLLDVRPKVHF-----------EICRLPEAINIPLSELLSKAAE------LKSLQELPLDND 70 (122)
T ss_pred cccCHHHHHHHHhCCCCeEEEEcCCHHHh-----------hcccCCCCeEccHHHHhhhhhh------hhhhhhcccccC
Confidence 36788999988876 56789999999999 6799999999999886542221 211 22334678
Q ss_pred CCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 322 LEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 322 ~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
++++||+||++|.||..++..|+.+||
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~ 97 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGL 97 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCC
Confidence 999999999999999999999999998
No 63
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.55 E-value=4.3e-15 Score=116.60 Aligned_cols=79 Identities=24% Similarity=0.273 Sum_probs=62.3
Q ss_pred cCHHHHHHHhhcC--CceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCC
Q 018869 246 WTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 323 (349)
Q Consensus 246 i~~~~v~~~~~~~--~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~ 323 (349)
++.+++.+.++++ +.+|||+|++.|| ..||||||+|+|+..+... .......++
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~-----------~~ghipga~~ip~~~l~~~-------------~~~~~~~~~ 56 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEY-----------EAGHLPGFRHTPGGQLVQE-------------TDHFAPVRG 56 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHH-----------HhCCCCCcEeCCHHHHHHH-------------HHHhcccCC
Confidence 4667888887654 4779999999999 7799999999998765421 111111247
Q ss_pred CCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 324 KPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 324 ~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
++||+||.+|.||+.++..|+.+||
T Consensus 57 ~~iv~~c~~G~rs~~aa~~L~~~G~ 81 (95)
T cd01534 57 ARIVLADDDGVRADMTASWLAQMGW 81 (95)
T ss_pred CeEEEECCCCChHHHHHHHHHHcCC
Confidence 8999999999999999999999998
No 64
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.4e-14 Score=116.93 Aligned_cols=95 Identities=23% Similarity=0.359 Sum_probs=76.9
Q ss_pred CccccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCC
Q 018869 242 PHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 321 (349)
Q Consensus 242 ~~~~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~ 321 (349)
....++.++++++++.+++++||||+++|| +.||||.++|||+..... .+.++ ..++.+.+....-+
T Consensus 21 ~~~sv~~~qvk~L~~~~~~~llDVRepeEf-----------k~gh~~~siNiPy~~~~~-~~~l~-~~eF~kqvg~~kp~ 87 (136)
T KOG1530|consen 21 NPQSVSVEQVKNLLQHPDVVLLDVREPEEF-----------KQGHIPASINIPYMSRPG-AGALK-NPEFLKQVGSSKPP 87 (136)
T ss_pred CcEEEEHHHHHHHhcCCCEEEEeecCHHHh-----------hccCCcceEecccccccc-ccccC-CHHHHHHhcccCCC
Confidence 345688999999999888999999999999 899999999999865432 23444 45556666544445
Q ss_pred CCCCEEEEcCChHHHHHHHHHHHhCcCC
Q 018869 322 LEKPVVTACGTGVTACILALVLFPVFFL 349 (349)
Q Consensus 322 ~~~~vivyC~~G~rA~~~~~~L~~~g~~ 349 (349)
.|++||++|.+|.|+-.|.-.|...||.
T Consensus 88 ~d~eiIf~C~SG~Rs~~A~~~l~s~Gyk 115 (136)
T KOG1530|consen 88 HDKEIIFGCASGVRSLKATKILVSAGYK 115 (136)
T ss_pred CCCcEEEEeccCcchhHHHHHHHHcCcc
Confidence 6789999999999999999999999983
No 65
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.52 E-value=2.6e-14 Score=116.71 Aligned_cols=87 Identities=20% Similarity=0.299 Sum_probs=68.4
Q ss_pred cCHHHHHHHhhc-CCceEEeccCCCcccccCCCCCCCCC-ccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCC
Q 018869 246 WTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIR-SGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 323 (349)
Q Consensus 246 i~~~~v~~~~~~-~~~~lID~R~~~ey~G~~~~~~~~~~-~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~ 323 (349)
++.+++.+.+++ ++.+|||+|++.|| . .||||||+|+|+.++.+... . ..+...+... ++++
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~-----------~~~ghIpgA~~ip~~~~~~~~~---~-~~~~~~l~~~-~~~~ 64 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEW-----------KFVGGVPDAVHVAWQVYPDMEI---N-PNFLAELEEK-VGKD 64 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHH-----------hcccCCCCceecchhhcccccc---C-HHHHHHHHhh-CCCC
Confidence 466788888876 56889999999999 5 79999999999988764211 1 2233333332 3788
Q ss_pred CCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 324 KPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 324 ~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
++||+||++|.+|..++..|..+||
T Consensus 65 ~~ivv~C~~G~rs~~aa~~L~~~G~ 89 (117)
T cd01522 65 RPVLLLCRSGNRSIAAAEAAAQAGF 89 (117)
T ss_pred CeEEEEcCCCccHHHHHHHHHHCCC
Confidence 9999999999999999999999998
No 66
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.52 E-value=1.8e-14 Score=113.71 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=65.4
Q ss_pred ccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCC
Q 018869 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 324 (349)
Q Consensus 245 ~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~ 324 (349)
.++.+++.+.++++ .+|||+|++++| ..||||||+|+|+..+.... ..+++++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR~~~e~-----------~~~hi~ga~~ip~~~~~~~~---------------~~~~~~~ 55 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIREPDEY-----------LRERIPGARLVPLSQLESEG---------------LPLVGAN 55 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECCCHHHH-----------HhCcCCCCEECChhHhcccc---------------cCCCCCC
Confidence 46788998888765 889999999999 67999999999998764311 1267889
Q ss_pred CEEEEcCChHHHHHHHHHHHhCcC
Q 018869 325 PVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 325 ~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+||+||++|.+|+.++..|.++||
T Consensus 56 ~iv~~c~~g~~s~~~~~~L~~~g~ 79 (99)
T cd01527 56 AIIFHCRSGMRTQQNAERLAAISA 79 (99)
T ss_pred cEEEEeCCCchHHHHHHHHHHcCC
Confidence 999999999999999999999887
No 67
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.50 E-value=5.3e-14 Score=136.14 Aligned_cols=95 Identities=22% Similarity=0.356 Sum_probs=77.8
Q ss_pred CCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 018869 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (349)
Q Consensus 75 ~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi 154 (349)
...++++++.+... +.+|||+| +.++|..||||||+|+|+..+... +....+
T Consensus 260 ~~~i~~~~~~~~~~--~~~IIDVR---------~~~ef~~ghIpgAinip~~~l~~~-----------------~~~~~~ 311 (355)
T PRK05597 260 GEVLDVPRVSALPD--GVTLIDVR---------EPSEFAAYSIPGAHNVPLSAIREG-----------------ANPPSV 311 (355)
T ss_pred ccccCHHHHHhccC--CCEEEECC---------CHHHHccCcCCCCEEeCHHHhhhc-----------------cccccC
Confidence 34688999885543 57899999 789999999999999998764321 111235
Q ss_pred CCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHh
Q 018869 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~ 198 (349)
+++++||+||..|. ++.++++.|+.+||++|++|+||+.+|.+
T Consensus 312 ~~~~~IvvyC~~G~-rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 312 SAGDEVVVYCAAGV-RSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred CCCCeEEEEcCCCH-HHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 67889999998765 89999999999999999999999999975
No 68
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.50 E-value=2.9e-14 Score=113.68 Aligned_cols=88 Identities=26% Similarity=0.338 Sum_probs=65.9
Q ss_pred cCHHHHHHHhhcC--CceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCC
Q 018869 246 WTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 323 (349)
Q Consensus 246 i~~~~v~~~~~~~--~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~ 323 (349)
++.++++++++++ +.+|||+|++.|| ..||||||+|+|+..+......+....+. +.+.. .++
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~-----------~~ghIpgA~~ip~~~~~~~~~~~~~~~~~-~~~~~---~~~ 65 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDF-----------RRGHIEGSINIPFSSVFLKEGELEQLPTV-PRLEN---YKG 65 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHH-----------hCCccCCCEeCCHHHhcccccccccccch-HHHHh---hcC
Confidence 4678899888753 5789999999999 78999999999998775432222111111 12221 247
Q ss_pred CCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 324 KPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 324 ~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
++||+||.+|.+|..++..|+.+||
T Consensus 66 ~~vv~~c~~g~~s~~~a~~L~~~G~ 90 (105)
T cd01525 66 KIIVIVSHSHKHAALFAAFLVKCGV 90 (105)
T ss_pred CeEEEEeCCCccHHHHHHHHHHcCC
Confidence 8999999999999999999999998
No 69
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.50 E-value=3e-14 Score=112.98 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=65.8
Q ss_pred cCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 018869 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 325 (349)
Q Consensus 246 i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~ 325 (349)
++.+++.+.+++++.+|||+|++.+|. +.||||||+|+|+..+... ...+ ..+...+++++++
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~----------~~ghIpga~~ip~~~~~~~----~~~~---~~~~~~~~~~~~~ 63 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELE----------RTGMIPGAFHAPRGMLEFW----ADPD---SPYHKPAFAEDKP 63 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHH----------hcCCCCCcEEcccchhhhh----cCcc---ccccccCCCCCCe
Confidence 467888888876678999999998872 4699999999998665210 0000 0112235788999
Q ss_pred EEEEcCChHHHHHHHHHHHhCcC
Q 018869 326 VVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 326 vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
||+||++|.+|..++..|+.+||
T Consensus 64 ivv~c~~g~~s~~~~~~l~~~G~ 86 (103)
T cd01447 64 FVFYCASGWRSALAGKTLQDMGL 86 (103)
T ss_pred EEEEcCCCCcHHHHHHHHHHcCh
Confidence 99999999999999999999997
No 70
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.48 E-value=8e-14 Score=110.55 Aligned_cols=80 Identities=18% Similarity=0.310 Sum_probs=63.9
Q ss_pred cCHHHHHHHhhcC--CceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCC
Q 018869 246 WTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 323 (349)
Q Consensus 246 i~~~~v~~~~~~~--~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~ 323 (349)
++.+++.+.++.+ +.+|||+|++.|| ..||||||+|+|+.++.+ ..+.+.. .+++
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~-----------~~~hI~ga~~ip~~~~~~----------~~~~~~~--~~~~ 58 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEEL-----------EIAFLPGFLHLPMSEIPE----------RSKELDS--DNPD 58 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHH-----------hcCcCCCCEecCHHHHHH----------HHHHhcc--cCCC
Confidence 5678888888754 5789999999999 678999999999876532 1111211 2568
Q ss_pred CCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 324 KPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 324 ~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
++||+||++|.||+.++..|..+||
T Consensus 59 ~~vv~~c~~g~rs~~~~~~l~~~G~ 83 (101)
T cd01528 59 KDIVVLCHHGGRSMQVAQWLLRQGF 83 (101)
T ss_pred CeEEEEeCCCchHHHHHHHHHHcCC
Confidence 9999999999999999999999998
No 71
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.48 E-value=1e-13 Score=107.69 Aligned_cols=75 Identities=23% Similarity=0.479 Sum_probs=62.7
Q ss_pred CHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCE
Q 018869 247 TLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPV 326 (349)
Q Consensus 247 ~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~v 326 (349)
+++++.+.++ ++.++||+|++++| ..||||||+|+|+.++ ++.+. .++++++|
T Consensus 2 ~~~e~~~~~~-~~~~iiD~R~~~~~-----------~~~hipgA~~ip~~~~-------------~~~~~--~~~~~~~v 54 (90)
T cd01524 2 QWHELDNYRA-DGVTLIDVRTPQEF-----------EKGHIKGAINIPLDEL-------------RDRLN--ELPKDKEI 54 (90)
T ss_pred CHHHHHHHhc-CCCEEEECCCHHHH-----------hcCCCCCCEeCCHHHH-------------HHHHH--hcCCCCcE
Confidence 4677888774 56789999999999 6799999999997543 33333 37888999
Q ss_pred EEEcCChHHHHHHHHHHHhCcC
Q 018869 327 VTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 327 ivyC~~G~rA~~~~~~L~~~g~ 348 (349)
|+||.+|.+|..++..|+.+||
T Consensus 55 vl~c~~g~~a~~~a~~L~~~G~ 76 (90)
T cd01524 55 IVYCAVGLRGYIAARILTQNGF 76 (90)
T ss_pred EEEcCCChhHHHHHHHHHHCCC
Confidence 9999999999999999999997
No 72
>PRK07411 hypothetical protein; Validated
Probab=99.48 E-value=1.4e-13 Score=134.64 Aligned_cols=104 Identities=22% Similarity=0.340 Sum_probs=82.0
Q ss_pred CCCcccHHHHHHhcCCC--CcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHH
Q 018869 74 KEPVVSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~--~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~ 151 (349)
....|+++++.+++++. +.+|||+| ++.+|+.||||||+|+|+..+.... ..+++.+
T Consensus 280 ~~~~Is~~el~~~l~~~~~~~vlIDVR---------~~~E~~~ghIpGAiniP~~~l~~~~--------~~~~l~~---- 338 (390)
T PRK07411 280 EIPEMTVTELKALLDSGADDFVLIDVR---------NPNEYEIARIPGSVLVPLPDIENGP--------GVEKVKE---- 338 (390)
T ss_pred ccCccCHHHHHHHHhCCCCCeEEEECC---------CHHHhccCcCCCCEEccHHHhhccc--------chHHHhh----
Confidence 44679999999988653 57899999 7899999999999999998764321 0122222
Q ss_pred cCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCCC
Q 018869 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202 (349)
Q Consensus 152 ~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~p 202 (349)
+.++++||+||..|. +|.++++.|+.+||++ +.|+||+.+|.++..|
T Consensus 339 --l~~d~~IVvyC~~G~-RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p 385 (390)
T PRK07411 339 --LLNGHRLIAHCKMGG-RSAKALGILKEAGIEG-TNVKGGITAWSREVDP 385 (390)
T ss_pred --cCCCCeEEEECCCCH-HHHHHHHHHHHcCCCe-EEecchHHHHHHhcCC
Confidence 346889999998765 8999999999999985 5799999999876443
No 73
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.47 E-value=2.1e-13 Score=117.61 Aligned_cols=102 Identities=17% Similarity=0.237 Sum_probs=73.3
Q ss_pred CCccccCHHHHHHHhhcCCceEEeccCCCc----c-cccCCCCCCCCCccccCCCcccCcccccCCCCCCCCH--HHHHH
Q 018869 241 QPHLIWTLEQVKRNIEEGTYQLVDARSKAR----F-DGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPA--DELKK 313 (349)
Q Consensus 241 ~~~~~i~~~~v~~~~~~~~~~lID~R~~~e----y-~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~--~el~~ 313 (349)
.....++.+++.+++++++.+|||+|++++ | .|..-. ....||||||+|+|+..+ ..+.++ +.+.+
T Consensus 33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~---~~~~~HIPGAv~ip~~~~----~~l~~~~~~~~~~ 105 (162)
T TIGR03865 33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWR---DEPRLNIPGSLWLPNTGY----GNLAPAWQAYFRR 105 (162)
T ss_pred CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceec---cccCCCCCCcEEecccCC----CCCCCchhHHHHH
Confidence 344679999999999887889999998763 3 221100 013379999999997422 223332 33666
Q ss_pred HHHHcCC-CCCCCEEEEcCChH-HHHHHHHHHHhCcCC
Q 018869 314 RFEQEGI-SLEKPVVTACGTGV-TACILALVLFPVFFL 349 (349)
Q Consensus 314 ~~~~~~i-~~~~~vivyC~~G~-rA~~~~~~L~~~g~~ 349 (349)
.+.+.+. +++++||+||++|. +|..++..|+.+||.
T Consensus 106 ~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 106 GLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred HHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 7766544 78999999999996 888899999999983
No 74
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.47 E-value=1.3e-13 Score=107.89 Aligned_cols=77 Identities=21% Similarity=0.376 Sum_probs=64.6
Q ss_pred cCHHHHHHHhhc-CCceEEeccCCCcccccCCCCCCCCCc--cccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCC
Q 018869 246 WTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRS--GHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 322 (349)
Q Consensus 246 i~~~~v~~~~~~-~~~~lID~R~~~ey~G~~~~~~~~~~~--GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~ 322 (349)
++.+++.+.+++ .+.+|||+|++.+| .. ||||||+|+|+..+ .+.+. .+++
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~-----------~~~~~hi~ga~~ip~~~~-------------~~~~~--~~~~ 55 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASY-----------AALPDHIPGAIHLDEDSL-------------DDWLG--DLDR 55 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHH-----------hcccCCCCCCeeCCHHHH-------------HHHHh--hcCC
Confidence 567788887765 46899999999999 55 99999999998654 23333 3788
Q ss_pred CCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 323 EKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 323 ~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+++||+||.+|.+|+.++..|+..||
T Consensus 56 ~~~ivv~c~~g~~s~~a~~~l~~~G~ 81 (96)
T cd01444 56 DRPVVVYCYHGNSSAQLAQALREAGF 81 (96)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHcCC
Confidence 99999999999999999999999998
No 75
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.46 E-value=1.2e-13 Score=107.73 Aligned_cols=80 Identities=30% Similarity=0.520 Sum_probs=67.6
Q ss_pred CCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCChHHHH
Q 018869 258 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTAC 337 (349)
Q Consensus 258 ~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~vivyC~~G~rA~ 337 (349)
++..|||+|++.+| ..||||||+|+|+..+......+ ...++.+.+...+++++++||+||.+|.+|.
T Consensus 3 ~~~~ivDvR~~~e~-----------~~~hi~ga~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~ 70 (100)
T smart00450 3 EKVVLLDVRSPEEY-----------EGGHIPGAVNIPLSELLDRRGEL-DILEFEELLKRLGLDKDKPVVVYCRSGNRSA 70 (100)
T ss_pred CCEEEEECCCHHHh-----------ccCCCCCceeCCHHHhccCCCCc-CHHHHHHHHHHcCCCCCCeEEEEeCCCcHHH
Confidence 46789999999999 67999999999998876543322 2337777777778999999999999999999
Q ss_pred HHHHHHHhCcCC
Q 018869 338 ILALVLFPVFFL 349 (349)
Q Consensus 338 ~~~~~L~~~g~~ 349 (349)
.++..|+..||.
T Consensus 71 ~~~~~l~~~G~~ 82 (100)
T smart00450 71 KAAWLLRELGFK 82 (100)
T ss_pred HHHHHHHHcCCC
Confidence 999999999983
No 76
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.45 E-value=1.4e-13 Score=113.17 Aligned_cols=79 Identities=18% Similarity=0.290 Sum_probs=63.0
Q ss_pred ccCHHHHHHHhhc------CCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHH-
Q 018869 245 IWTLEQVKRNIEE------GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ- 317 (349)
Q Consensus 245 ~i~~~~v~~~~~~------~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~- 317 (349)
.++.+++.+.+.+ ++++|||+|++.|| ..||||||+|+|+.+ ++.+.+.+
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~-----------~~ghI~gA~~ip~~~------------~l~~~~~~~ 59 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEY-----------NGGHIKGAVNLSTKD------------ELEEFFLDK 59 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHH-----------hCCcCCCCEeCCcHH------------HHHHHHHHh
Confidence 3678888888865 36889999999999 679999999999852 22222322
Q ss_pred ---cCCCCCCCEEEEcC-ChHHHHHHHHHHHhC
Q 018869 318 ---EGISLEKPVVTACG-TGVTACILALVLFPV 346 (349)
Q Consensus 318 ---~~i~~~~~vivyC~-~G~rA~~~~~~L~~~ 346 (349)
.+++++++||+||+ +|.||..++..|+..
T Consensus 60 ~~~~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~ 92 (121)
T cd01530 60 PGVASKKKRRVLIFHCEFSSKRGPRMARHLRNL 92 (121)
T ss_pred hcccccCCCCEEEEECCCccccHHHHHHHHHHH
Confidence 35789999999997 999999999999974
No 77
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.45 E-value=7.3e-14 Score=112.02 Aligned_cols=90 Identities=30% Similarity=0.522 Sum_probs=72.3
Q ss_pred CHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHc--CCCCCC
Q 018869 247 TLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE--GISLEK 324 (349)
Q Consensus 247 ~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~--~i~~~~ 324 (349)
|++|+++.+++++.+|||+|++.+| ..||||||+|+|+..+ .........+.+.+.+... +++.++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~-----------~~~hI~ga~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEY-----------ERGHIPGAVNIPFPSL-DPDEPSLSEDKLDEFLKELGKKIDKDK 68 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHH-----------HHSBETTEEEEEGGGG-SSSSSBCHHHHHHHHHHHHTHGSTTTS
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHH-----------HcCCCCCCcccccccc-ccccccccccccccccccccccccccc
Confidence 4688999887788999999999999 7799999999999887 3344556666666655544 458889
Q ss_pred CEEEEcCChHHHHHHHHH-----HHhCcC
Q 018869 325 PVVTACGTGVTACILALV-----LFPVFF 348 (349)
Q Consensus 325 ~vivyC~~G~rA~~~~~~-----L~~~g~ 348 (349)
+||+||.+|.++..++.. |..+||
T Consensus 69 ~iv~yc~~~~~~~~~~~~~~~~~l~~~g~ 97 (113)
T PF00581_consen 69 DIVFYCSSGWRSGSAAAARVAWILKKLGF 97 (113)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHHHHHTTT
T ss_pred cceeeeecccccchhHHHHHHHHHHHcCC
Confidence 999999999888877666 888887
No 78
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.44 E-value=2.3e-13 Score=109.29 Aligned_cols=78 Identities=28% Similarity=0.403 Sum_probs=67.0
Q ss_pred ccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCC
Q 018869 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 324 (349)
Q Consensus 245 ~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~ 324 (349)
.++.+++.+.+++++.+|||+|++.|| ..||||||+|+|+.. |.+.+.. +++++
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~~~e~-----------~~ghi~gA~~ip~~~-------------l~~~~~~--~~~~~ 59 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRDPQSF-----------AMGHAPGAFHLTNDS-------------LGAFMRQ--ADFDT 59 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCCHHHH-----------hcCCCCCCeECCHHH-------------HHHHHHh--cCCCC
Confidence 578899999887777899999999999 679999999999743 3444443 67889
Q ss_pred CEEEEcCChHHHHHHHHHHHhCcC
Q 018869 325 PVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 325 ~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+|++||.+|.+|..++..|+..||
T Consensus 60 ~ivv~c~~g~~s~~a~~~L~~~G~ 83 (108)
T PRK00162 60 PVMVMCYHGNSSQGAAQYLLQQGF 83 (108)
T ss_pred CEEEEeCCCCCHHHHHHHHHHCCc
Confidence 999999999999999999999998
No 79
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.42 E-value=2.4e-13 Score=108.08 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=56.4
Q ss_pred CceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCChHHHHH
Q 018869 259 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACI 338 (349)
Q Consensus 259 ~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~vivyC~~G~rA~~ 338 (349)
...+||+|+++|| ..||||||+|+|+.++ ++.+.....+++++||+||++|.||..
T Consensus 18 ~~~lIDvR~~~ef-----------~~ghIpgAinip~~~l-------------~~~l~~~~~~~~~~vvlyC~~G~rS~~ 73 (101)
T TIGR02981 18 AEHWIDVRIPEQY-----------QQEHIQGAINIPLKEI-------------KEHIATAVPDKNDTVKLYCNAGRQSGM 73 (101)
T ss_pred CCEEEECCCHHHH-----------hcCCCCCCEECCHHHH-------------HHHHHHhCCCCCCeEEEEeCCCHHHHH
Confidence 4679999999999 6799999999998543 444554445678899999999999999
Q ss_pred HHHHHHhCcCC
Q 018869 339 LALVLFPVFFL 349 (349)
Q Consensus 339 ~~~~L~~~g~~ 349 (349)
++..|+.+||.
T Consensus 74 aa~~L~~~G~~ 84 (101)
T TIGR02981 74 AKDILLDMGYT 84 (101)
T ss_pred HHHHHHHcCCC
Confidence 99999999983
No 80
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.41 E-value=3.9e-13 Score=105.58 Aligned_cols=72 Identities=25% Similarity=0.373 Sum_probs=58.9
Q ss_pred cCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCChHHH
Q 018869 257 EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTA 336 (349)
Q Consensus 257 ~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~vivyC~~G~rA 336 (349)
+++.+|||+|++.+| ..||||||+|+|+.++.. ..++++. +.. ++++++||+||.+|.+|
T Consensus 10 ~~~~~iiDvR~~~~~-----------~~~hIpgA~~ip~~~~~~------~~~~~~~-~~~--~~~~~~ivv~c~~g~~s 69 (96)
T cd01529 10 EPGTALLDVRAEDEY-----------AAGHLPGKRSIPGAALVL------RSQELQA-LEA--PGRATRYVLTCDGSLLA 69 (96)
T ss_pred CCCeEEEeCCCHHHH-----------cCCCCCCcEeCCHHHhcC------CHHHHHH-hhc--CCCCCCEEEEeCChHHH
Confidence 356889999999999 679999999999876532 2344443 432 57889999999999999
Q ss_pred HHHHHHHHhCcC
Q 018869 337 CILALVLFPVFF 348 (349)
Q Consensus 337 ~~~~~~L~~~g~ 348 (349)
..++..|+.+||
T Consensus 70 ~~~~~~l~~~G~ 81 (96)
T cd01529 70 RFAAQELLALGG 81 (96)
T ss_pred HHHHHHHHHcCC
Confidence 999999999998
No 81
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.41 E-value=5.1e-13 Score=106.67 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=57.6
Q ss_pred cCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCChHHH
Q 018869 257 EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTA 336 (349)
Q Consensus 257 ~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~vivyC~~G~rA 336 (349)
..+-.|||+|+++|| ..||||||+|+|+.+ +.+.+.+.+.+++++||+||++|.||
T Consensus 18 ~~~~~lIDvR~~~ef-----------~~ghIpGAiniP~~~-------------l~~~l~~l~~~~~~~IVlyC~~G~rS 73 (104)
T PRK10287 18 FAAEHWIDVRVPEQY-----------QQEHVQGAINIPLKE-------------VKERIATAVPDKNDTVKLYCNAGRQS 73 (104)
T ss_pred cCCCEEEECCCHHHH-----------hcCCCCccEECCHHH-------------HHHHHHhcCCCCCCeEEEEeCCChHH
Confidence 344579999999999 679999999999864 34456655667788999999999999
Q ss_pred HHHHHHHHhCcC
Q 018869 337 CILALVLFPVFF 348 (349)
Q Consensus 337 ~~~~~~L~~~g~ 348 (349)
..++..|.++||
T Consensus 74 ~~aa~~L~~~G~ 85 (104)
T PRK10287 74 GQAKEILSEMGY 85 (104)
T ss_pred HHHHHHHHHcCC
Confidence 999999999998
No 82
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.40 E-value=3e-13 Score=109.10 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=65.8
Q ss_pred cccCHHHHHHHhhc--CCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCC
Q 018869 244 LIWTLEQVKRNIEE--GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 321 (349)
Q Consensus 244 ~~i~~~~v~~~~~~--~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~ 321 (349)
..++.+++.+.+.+ ++.+|||+|++.+| ..||||||+|+|+..+.. ..+ .+++
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~-----------~~ghIpgA~~ip~~~l~~------------~~~--~~i~ 62 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAY-----------ARGHVPGAINLPHREICE------------NAT--AKLD 62 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHH-----------hcCCCCCCEeCCHHHhhh------------Hhh--hcCC
Confidence 35788999998865 35789999999999 679999999999866421 112 2588
Q ss_pred CCCCEEEEcCCh--HHHHHHHHHHHhCcC
Q 018869 322 LEKPVVTACGTG--VTACILALVLFPVFF 348 (349)
Q Consensus 322 ~~~~vivyC~~G--~rA~~~~~~L~~~g~ 348 (349)
++++||+||++| .+|..++..|+++||
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~ 91 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGF 91 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCC
Confidence 999999999998 489999999999997
No 83
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.32 E-value=1.1e-12 Score=100.42 Aligned_cols=72 Identities=22% Similarity=0.409 Sum_probs=59.9
Q ss_pred HHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCC
Q 018869 253 RNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGT 332 (349)
Q Consensus 253 ~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~vivyC~~ 332 (349)
+.+.+++..|||+|++.+| ..||||||+|+|+..+.... ...+++++++||+||+.
T Consensus 4 ~~~~~~~~~iiD~R~~~~~-----------~~~~i~ga~~~~~~~~~~~~-------------~~~~~~~~~~vv~~c~~ 59 (89)
T cd00158 4 ELLDDEDAVLLDVREPEEY-----------AAGHIPGAINIPLSELEERA-------------ALLELDKDKPIVVYCRS 59 (89)
T ss_pred HHhcCCCeEEEECCCHHHH-----------hccccCCCEecchHHHhhHH-------------HhhccCCCCeEEEEeCC
Confidence 3444567899999999999 67999999999997654321 23367899999999999
Q ss_pred hHHHHHHHHHHHhCcC
Q 018869 333 GVTACILALVLFPVFF 348 (349)
Q Consensus 333 G~rA~~~~~~L~~~g~ 348 (349)
|.+|..++..|+..||
T Consensus 60 ~~~a~~~~~~l~~~G~ 75 (89)
T cd00158 60 GNRSARAAKLLRKAGG 75 (89)
T ss_pred CchHHHHHHHHHHhCc
Confidence 9999999999999987
No 84
>PRK01415 hypothetical protein; Validated
Probab=99.31 E-value=4.1e-12 Score=116.08 Aligned_cols=86 Identities=9% Similarity=0.090 Sum_probs=70.5
Q ss_pred CccccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHH-HcCC
Q 018869 242 PHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFE-QEGI 320 (349)
Q Consensus 242 ~~~~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~-~~~i 320 (349)
....++++++.+.+++++.+|||+|++.|| ..||||||+|+|...+.+ +.+... ...+
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~-----------~~Ghi~gAinip~~~f~e----------~~~~~~~~~~~ 168 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEV-----------EVGTFKSAINPNTKTFKQ----------FPAWVQQNQEL 168 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHH-----------hcCCcCCCCCCChHHHhh----------hHHHHhhhhhh
Confidence 345689999999999888999999999999 779999999999876532 111111 1136
Q ss_pred CCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 321 SLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 321 ~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+++++|++||.+|.||..++..|++.||
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf 196 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGY 196 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCC
Confidence 7899999999999999999999999998
No 85
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.31 E-value=4.3e-12 Score=102.75 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=60.0
Q ss_pred ccCHHHHHHHhhc--CCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCC
Q 018869 245 IWTLEQVKRNIEE--GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 322 (349)
Q Consensus 245 ~i~~~~v~~~~~~--~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~ 322 (349)
.++.+++.+.+.+ ++.+|||+|++ || ..||||||+|+|+..+.. ++.++....++++
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~-----------~~~hi~gA~~ip~~~l~~---------~~~~~~~~~~~~~ 61 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DY-----------AGGHIKGSWHYPSTRFKA---------QLNQLVQLLSGSK 61 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-cc-----------CCCcCCCCEecCHHHHhh---------CHHHHHHHHhcCC
Confidence 4788899998875 35789999999 99 679999999999987542 2233333335678
Q ss_pred CCCEEEEcC-ChHHHHHHHHHHH
Q 018869 323 EKPVVTACG-TGVTACILALVLF 344 (349)
Q Consensus 323 ~~~vivyC~-~G~rA~~~~~~L~ 344 (349)
+++||+||. +|.|+..++..|.
T Consensus 62 ~~~iv~yC~~~~~r~~~aa~~l~ 84 (113)
T cd01531 62 KDTVVFHCALSQVRGPSAARKFL 84 (113)
T ss_pred CCeEEEEeecCCcchHHHHHHHH
Confidence 899999998 7788877766553
No 86
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.30 E-value=6e-12 Score=122.30 Aligned_cols=94 Identities=22% Similarity=0.341 Sum_probs=74.1
Q ss_pred cccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCC---CceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 018869 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIP---GALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (349)
Q Consensus 77 lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIP---GAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~g 153 (349)
.++++++.+++++++.+||||| +++||+.|||| ||+|+|+..+.... .+.+.+. .
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR---------~~~E~~~ghI~~~~gAinIPl~~l~~~~-----------~~~~~l~--~ 329 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVR---------EPHEVLLKDLPEGGASLKLPLSAITDDA-----------DILHALS--P 329 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECC---------CHHHhhhccCCCCCccEeCcHHHhhcch-----------hhhhhcc--c
Confidence 6899999999987778999999 78999999998 59999998764310 0111111 2
Q ss_pred CCCCCcEEEECCCCcchHHHHHHHHHHcCCCc-eeEeCCCHH
Q 018869 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDR-VWVLDGGLP 194 (349)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~-V~~L~GG~~ 194 (349)
+++ ++|||||..|. ++..++..|+..||++ |++|.||+.
T Consensus 330 ~~~-~~Ivv~C~sG~-RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 330 IDG-DNVVVYCASGI-RSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred cCC-CcEEEECCCCh-hHHHHHHHHHHcCCCCceEEeccccC
Confidence 234 48999998876 7999999999999986 999999975
No 87
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.28 E-value=7.1e-12 Score=101.54 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=55.8
Q ss_pred ccCHHHHHHHhhcC------CceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHc
Q 018869 245 IWTLEQVKRNIEEG------TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE 318 (349)
Q Consensus 245 ~i~~~~v~~~~~~~------~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~ 318 (349)
.++.+++++.++++ +.+|||+|++ || ..||||||+|+|+..+.+ .+.+.+...
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef-----------~~ghipgAi~ip~~~~~~---------~~~~~~~~~ 61 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DY-----------EGGHIKGSINLPAQSCYQ---------TLPQVYALF 61 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hc-----------CCCcccCceecchhHHHH---------HHHHHHHHh
Confidence 46788999988764 5789999999 99 679999999999876532 122233321
Q ss_pred CCCCCCCEEEEcCC-hHHHHHHHHH
Q 018869 319 GISLEKPVVTACGT-GVTACILALV 342 (349)
Q Consensus 319 ~i~~~~~vivyC~~-G~rA~~~~~~ 342 (349)
...+.++||+||.+ |.||..++..
T Consensus 62 ~~~~~~~iv~~C~~~g~rs~~a~~~ 86 (113)
T cd01443 62 SLAGVKLAIFYCGSSQGRGPRAARW 86 (113)
T ss_pred hhcCCCEEEEECCCCCcccHHHHHH
Confidence 22456789999997 6787766544
No 88
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.26 E-value=7.4e-12 Score=97.64 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=54.6
Q ss_pred HhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCC-CCCCCEEEEcCC
Q 018869 254 NIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGI-SLEKPVVTACGT 332 (349)
Q Consensus 254 ~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i-~~~~~vivyC~~ 332 (349)
.+++++.+|||+|++.|| ..||||||+|+|+..+... ... .+ +++++||+||.+
T Consensus 5 ~~~~~~~~liDvR~~~e~-----------~~~hi~ga~~ip~~~~~~~------------~~~--~~~~~~~~ivl~c~~ 59 (92)
T cd01532 5 LLAREEIALIDVREEDPF-----------AQSHPLWAANLPLSRLELD------------AWV--RIPRRDTPIVVYGEG 59 (92)
T ss_pred hhcCCCeEEEECCCHHHH-----------hhCCcccCeeCCHHHHHhh------------hHh--hCCCCCCeEEEEeCC
Confidence 345567899999999999 7799999999998664211 111 13 358899999999
Q ss_pred hHH--HHHHHHHHHhCcC
Q 018869 333 GVT--ACILALVLFPVFF 348 (349)
Q Consensus 333 G~r--A~~~~~~L~~~g~ 348 (349)
|.+ |..++..|+..||
T Consensus 60 G~~~~s~~aa~~L~~~G~ 77 (92)
T cd01532 60 GGEDLAPRAARRLSELGY 77 (92)
T ss_pred CCchHHHHHHHHHHHcCc
Confidence 987 6788889999997
No 89
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.3e-11 Score=98.81 Aligned_cols=71 Identities=27% Similarity=0.489 Sum_probs=59.2
Q ss_pred hhcCCceEEeccCCCcccccCCCCCCCCCccccCC-CcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCCh
Q 018869 255 IEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPG-SKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTG 333 (349)
Q Consensus 255 ~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPG-A~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~vivyC~~G 333 (349)
....+.+|||+|++.|| ..+|||| ++|+|..++....... .++++++||+||.+|
T Consensus 16 ~~~~~~~liDvR~~~e~-----------~~~~i~~~~~~ip~~~~~~~~~~~-------------~~~~~~~ivv~C~~G 71 (110)
T COG0607 16 LAGEDAVLLDVREPEEY-----------ERGHIPGAAINIPLSELKAAENLL-------------ELPDDDPIVVYCASG 71 (110)
T ss_pred hccCCCEEEeccChhHh-----------hhcCCCcceeeeecccchhhhccc-------------ccCCCCeEEEEeCCC
Confidence 34457899999999999 7899999 9999998876532210 046899999999999
Q ss_pred HHHHHHHHHHHhCcCC
Q 018869 334 VTACILALVLFPVFFL 349 (349)
Q Consensus 334 ~rA~~~~~~L~~~g~~ 349 (349)
.||..++..|+..||.
T Consensus 72 ~rS~~aa~~L~~~G~~ 87 (110)
T COG0607 72 VRSAAAAAALKLAGFT 87 (110)
T ss_pred CChHHHHHHHHHcCCc
Confidence 9999999999999983
No 90
>PRK07411 hypothetical protein; Validated
Probab=99.22 E-value=1.6e-11 Score=120.36 Aligned_cols=85 Identities=16% Similarity=0.353 Sum_probs=69.0
Q ss_pred cccCHHHHHHHhhcC--CceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCC
Q 018869 244 LIWTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 321 (349)
Q Consensus 244 ~~i~~~~v~~~~~~~--~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~ 321 (349)
..++.+++.+.++++ +.+|||+|++.|| ..||||||+|+|+.++.... ..+++ .+ +.
T Consensus 282 ~~Is~~el~~~l~~~~~~~vlIDVR~~~E~-----------~~ghIpGAiniP~~~l~~~~----~~~~l----~~--l~ 340 (390)
T PRK07411 282 PEMTVTELKALLDSGADDFVLIDVRNPNEY-----------EIARIPGSVLVPLPDIENGP----GVEKV----KE--LL 340 (390)
T ss_pred CccCHHHHHHHHhCCCCCeEEEECCCHHHh-----------ccCcCCCCEEccHHHhhccc----chHHH----hh--cC
Confidence 358999999988654 4789999999999 67999999999998875421 12222 22 56
Q ss_pred CCCCEEEEcCChHHHHHHHHHHHhCcCC
Q 018869 322 LEKPVVTACGTGVTACILALVLFPVFFL 349 (349)
Q Consensus 322 ~~~~vivyC~~G~rA~~~~~~L~~~g~~ 349 (349)
++++||+||.+|.||..++..|+.+||.
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999983
No 91
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.21 E-value=2.2e-11 Score=112.60 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=67.1
Q ss_pred cccCHHHHHHHhhcC------CceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHH
Q 018869 244 LIWTLEQVKRNIEEG------TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 317 (349)
Q Consensus 244 ~~i~~~~v~~~~~~~------~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~ 317 (349)
..++.+++.+.+++. +.+|||+|++.|| ..||||||+|+|..++.+- ++.|++....
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~-----------~~Ghi~GAiniPl~~f~~~------~~~l~~~~~~ 172 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEV-----------DVGTFDGALDYRIDKFTEF------PEALAAHRAD 172 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHH-----------ccCccCCCEeCChhHhhhh------HHHHHhhhhh
Confidence 357888988877642 4789999999999 7799999999999766321 1223333322
Q ss_pred cCCCCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 318 EGISLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 318 ~~i~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+ ++++||+||.+|.|+..++..|+..||
T Consensus 173 --~-kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf 200 (257)
T PRK05320 173 --L-AGKTVVSFCTGGIRCEKAAIHMQEVGI 200 (257)
T ss_pred --c-CCCeEEEECCCCHHHHHHHHHHHHcCC
Confidence 3 789999999999999999999999998
No 92
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.20 E-value=2.9e-11 Score=118.14 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=66.3
Q ss_pred ccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCC
Q 018869 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 324 (349)
Q Consensus 245 ~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~ 324 (349)
.++.+++.+.+++ +.+|||+|++.|| ..||||||+|+|+..+ ++.+....+++++
T Consensus 4 ~is~~el~~~l~~-~~~ivDvR~~~e~-----------~~ghIpgAi~ip~~~l-------------~~~~~~~~~~~~~ 58 (376)
T PRK08762 4 EISPAEARARAAQ-GAVLIDVREAHER-----------ASGQAEGALRIPRGFL-------------ELRIETHLPDRDR 58 (376)
T ss_pred eeCHHHHHHHHhC-CCEEEECCCHHHH-----------hCCcCCCCEECCHHHH-------------HHHHhhhcCCCCC
Confidence 4788899988865 4889999999999 7799999999998543 3334443457899
Q ss_pred CEEEEcCChHHHHHHHHHHHhCcC
Q 018869 325 PVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 325 ~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+||+||++|.||..++..|+..||
T Consensus 59 ~IvvyC~~G~rs~~aa~~L~~~G~ 82 (376)
T PRK08762 59 EIVLICASGTRSAHAAATLRELGY 82 (376)
T ss_pred eEEEEcCCCcHHHHHHHHHHHcCC
Confidence 999999999999999999999998
No 93
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.19 E-value=6.1e-11 Score=108.44 Aligned_cols=115 Identities=24% Similarity=0.352 Sum_probs=90.0
Q ss_pred ccHHHHHHh-cCCCCcEEEEeccC--CCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 018869 78 VSVDWLHAN-LREPDLKVLDASWY--MPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (349)
Q Consensus 78 Is~~~L~~~-l~~~~~~iIDvR~~--~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi 154 (349)
+..+++..+ +..+++.+||+|.. .....+++...+..||||||+|||+..+.++.. .+.+++++...+...|+
T Consensus 158 ~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g----~~k~~edl~~~f~~~~l 233 (286)
T KOG1529|consen 158 ATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDG----FIKPAEDLKHLFAQKGL 233 (286)
T ss_pred HHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhccccc----ccCCHHHHHHHHHhcCc
Confidence 333443333 34457999999942 333334456788899999999999998776532 34448899999999999
Q ss_pred CCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHh
Q 018869 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~ 198 (349)
..+++||+-|..|. .|+..+-.|...| .+|++|||+|..|.-
T Consensus 234 ~~~~p~~~sC~~Gi-sa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 234 KLSKPVIVSCGTGI-SASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred ccCCCEEEeeccch-hHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 99999999998876 7888999999999 789999999999974
No 94
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.16 E-value=4.6e-11 Score=117.21 Aligned_cols=83 Identities=23% Similarity=0.407 Sum_probs=69.3
Q ss_pred CccccCHHHHHHHhhcC-CceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCC
Q 018869 242 PHLIWTLEQVKRNIEEG-TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGI 320 (349)
Q Consensus 242 ~~~~i~~~~v~~~~~~~-~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i 320 (349)
....++.+++.+.++++ +.+|||+|++.|| ..||||||+|+|+..+... +. +. .+
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef-----------~~ghIpGAinip~~~l~~~-------~~----~~--~l 340 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVREPVEW-----------DIVHIPGAQLIPKSEILSG-------EA----LA--KL 340 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECCCHHHH-----------hcCCCCCCEEcChHHhcch-------hH----Hh--hC
Confidence 34578999999988754 4789999999999 7899999999999876431 11 22 37
Q ss_pred CCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 321 SLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 321 ~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+++++||+||++|.||..++..|++.||
T Consensus 341 ~~d~~iVvyC~~G~rS~~aa~~L~~~G~ 368 (392)
T PRK07878 341 PQDRTIVLYCKTGVRSAEALAALKKAGF 368 (392)
T ss_pred CCCCcEEEEcCCChHHHHHHHHHHHcCC
Confidence 8899999999999999999999999998
No 95
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.14 E-value=8.1e-11 Score=99.72 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=55.3
Q ss_pred CceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCChHHHHH
Q 018869 259 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACI 338 (349)
Q Consensus 259 ~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~vivyC~~G~rA~~ 338 (349)
+..|||+|++.+| +.||||||+|+|. ++|.+.+.+ ++++++||+||.+|.+|..
T Consensus 11 ~~~ivDvR~~~e~-----------~~gHIpgAi~~~~-------------~~l~~~l~~--l~~~~~vVv~c~~g~~a~~ 64 (145)
T cd01535 11 QTAVVDVTASANY-----------VKRHIPGAWWVLR-------------AQLAQALEK--LPAAERYVLTCGSSLLARF 64 (145)
T ss_pred CeEEEECCCHHHH-----------HcCCCCCceeCCH-------------HHHHHHHHh--cCCCCCEEEEeCCChHHHH
Confidence 4789999999999 7899999999864 455666665 5678999999999999999
Q ss_pred HHHHHHhCcC
Q 018869 339 LALVLFPVFF 348 (349)
Q Consensus 339 ~~~~L~~~g~ 348 (349)
++..|+..||
T Consensus 65 aa~~L~~~G~ 74 (145)
T cd01535 65 AAADLAALTV 74 (145)
T ss_pred HHHHHHHcCC
Confidence 9999998887
No 96
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.10 E-value=9.6e-11 Score=113.90 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=66.4
Q ss_pred ccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccC---CCcccCcccccCCCCCCCCHHHHHHHHHHcCCC
Q 018869 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVP---GSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 321 (349)
Q Consensus 245 ~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIP---GA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~ 321 (349)
.++.+++.+.+++++.+|||+|++.|| ..|||| ||+|+|+.++.+.. +..+.+. .++
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~-----------~~ghI~~~~gAinIPl~~l~~~~-------~~~~~l~--~~~ 331 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEV-----------LLKDLPEGGASLKLPLSAITDDA-------DILHALS--PID 331 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHh-----------hhccCCCCCccEeCcHHHhhcch-------hhhhhcc--ccC
Confidence 688999999888777889999999999 779998 59999998774321 0111122 244
Q ss_pred CCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 322 LEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 322 ~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
++ +||+||.+|.||..++..|+..||
T Consensus 332 ~~-~Ivv~C~sG~RS~~Aa~~L~~~G~ 357 (370)
T PRK05600 332 GD-NVVVYCASGIRSADFIEKYSHLGH 357 (370)
T ss_pred CC-cEEEECCCChhHHHHHHHHHHcCC
Confidence 44 999999999999999999999998
No 97
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.10 E-value=1.7e-10 Score=110.92 Aligned_cols=88 Identities=17% Similarity=0.266 Sum_probs=61.0
Q ss_pred HHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCC---------CC---------CCCCHH
Q 018869 248 LEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA---------SQ---------TLLPAD 309 (349)
Q Consensus 248 ~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~---------~~---------~l~~~~ 309 (349)
..++.+.+. ++..|||||++.|| ..||||||+|+|+.+.... .+ .+.+ .
T Consensus 5 ~~~~~~~~~-~~~~lIDVRsp~Ef-----------~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~-~ 71 (345)
T PRK11784 5 AQDFRALFL-NDTPLIDVRSPIEF-----------AEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVA-G 71 (345)
T ss_pred HHHHHHHHh-CCCEEEECCCHHHH-----------hcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcc-h
Confidence 345555543 46799999999999 7899999999998543210 01 1111 2
Q ss_pred HHHHHHHHc--CC-CCCCCEEEEc-CChHHHHHHHHHHHhCcC
Q 018869 310 ELKKRFEQE--GI-SLEKPVVTAC-GTGVTACILALVLFPVFF 348 (349)
Q Consensus 310 el~~~~~~~--~i-~~~~~vivyC-~~G~rA~~~~~~L~~~g~ 348 (349)
++.+.+.+. .+ .++++||+|| .+|.||+.++..|+..||
T Consensus 72 ~l~~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~ 114 (345)
T PRK11784 72 NIAAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI 114 (345)
T ss_pred hHHHHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC
Confidence 333332221 12 3788999999 589999999999999997
No 98
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.02 E-value=2.6e-10 Score=110.44 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=65.1
Q ss_pred ccccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCC
Q 018869 243 HLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 322 (349)
Q Consensus 243 ~~~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~ 322 (349)
...++.+++.+.. .+.+|||+|+++|| ..||||||+|+|+.++.... ....+++
T Consensus 260 ~~~i~~~~~~~~~--~~~~IIDVR~~~ef-----------~~ghIpgAinip~~~l~~~~-------------~~~~~~~ 313 (355)
T PRK05597 260 GEVLDVPRVSALP--DGVTLIDVREPSEF-----------AAYSIPGAHNVPLSAIREGA-------------NPPSVSA 313 (355)
T ss_pred ccccCHHHHHhcc--CCCEEEECCCHHHH-----------ccCcCCCCEEeCHHHhhhcc-------------ccccCCC
Confidence 3467888888543 35789999999999 77999999999998765321 1113678
Q ss_pred CCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 323 EKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 323 ~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+++||+||++|.||..++..|+.+||
T Consensus 314 ~~~IvvyC~~G~rS~~Aa~~L~~~G~ 339 (355)
T PRK05597 314 GDEVVVYCAAGVRSAQAVAILERAGY 339 (355)
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCC
Confidence 89999999999999999999999998
No 99
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=98.97 E-value=7.5e-10 Score=105.03 Aligned_cols=79 Identities=27% Similarity=0.298 Sum_probs=54.6
Q ss_pred CceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCC--CCC-CC--C------------HHHHHHHHHHc--C
Q 018869 259 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA--SQT-LL--P------------ADELKKRFEQE--G 319 (349)
Q Consensus 259 ~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~--~~~-l~--~------------~~el~~~~~~~--~ 319 (349)
...|||||++.|| ..||||||+|+|....... -++ ++ + ...|.+.+.+. -
T Consensus 2 ~~~liDVRsp~Ef-----------~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~ 70 (311)
T TIGR03167 2 FDPLIDVRSPAEF-----------AEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAF 70 (311)
T ss_pred CCEEEECCCHHHH-----------hcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhh
Confidence 3579999999999 7899999999998532110 011 11 0 11333433331 2
Q ss_pred CCCCCCEEEEcC-ChHHHHHHHHHHHhCcC
Q 018869 320 ISLEKPVVTACG-TGVTACILALVLFPVFF 348 (349)
Q Consensus 320 i~~~~~vivyC~-~G~rA~~~~~~L~~~g~ 348 (349)
.++++.||+||. +|.||..++.+|+.+||
T Consensus 71 ~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~ 100 (311)
T TIGR03167 71 ADGPPQPLLYCWRGGMRSGSLAWLLAQIGF 100 (311)
T ss_pred cCCCCcEEEEECCCChHHHHHHHHHHHcCC
Confidence 344556999995 89999999999999998
No 100
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=98.97 E-value=6.4e-10 Score=92.50 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=56.4
Q ss_pred cCHHHHHHHhhc--CCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCC---CC-----CCCHHHHHHHH
Q 018869 246 WTLEQVKRNIEE--GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS---QT-----LLPADELKKRF 315 (349)
Q Consensus 246 i~~~~v~~~~~~--~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~---~~-----l~~~~el~~~~ 315 (349)
|+.+++.+.++. .+.+|||+|+..+| ..||||||+|+|+..+.... +. +.+.++.++.+
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~-----------~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 70 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEY-----------SSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRL 70 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHH-----------hhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHH
Confidence 678899998875 46899999999999 78999999999998754211 10 22334455555
Q ss_pred HHcCCCCCCCEEEEcCChHH
Q 018869 316 EQEGISLEKPVVTACGTGVT 335 (349)
Q Consensus 316 ~~~~i~~~~~vivyC~~G~r 335 (349)
... .+++||+||.+|.+
T Consensus 71 ~~~---~~~~VVvYd~~~~~ 87 (132)
T cd01446 71 RRG---ESLAVVVYDESSSD 87 (132)
T ss_pred hcC---CCCeEEEEeCCCcc
Confidence 542 67899999999875
No 101
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.96 E-value=1.5e-09 Score=99.83 Aligned_cols=102 Identities=21% Similarity=0.303 Sum_probs=80.1
Q ss_pred CCCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcC
Q 018869 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~g 153 (349)
-...|+|++..+++.++++++||+| ..-||+.||-.||++.+...+.+. ++.+++.+..+
T Consensus 111 vG~yl~p~~wn~~l~D~~~vviDtR---------N~YE~~iG~F~gAv~p~~~tFref----------P~~v~~~~~~~- 170 (308)
T COG1054 111 VGTYLSPKDWNELLSDPDVVVIDTR---------NDYEVAIGHFEGAVEPDIETFREF----------PAWVEENLDLL- 170 (308)
T ss_pred ccCccCHHHHHHHhcCCCeEEEEcC---------cceeEeeeeecCccCCChhhhhhh----------HHHHHHHHHhc-
Confidence 3567999999999999999999999 466899999999999998876542 23444544443
Q ss_pred CCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHh
Q 018869 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~ 198 (349)
++++||.||-+|. +=..+...|+..||++|+.|+||+-.+..
T Consensus 171 --~~KkVvmyCTGGI-RCEKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 171 --KDKKVVMYCTGGI-RCEKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred --cCCcEEEEcCCce-eehhhHHHHHHhcchhhhcccchHHHHhh
Confidence 5679999987666 44444445667899999999999988864
No 102
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=9.3e-10 Score=102.73 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=70.9
Q ss_pred CCcccHHHHHHhcCCC------CcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHH
Q 018869 75 EPVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAA 148 (349)
Q Consensus 75 ~~lIs~~~L~~~l~~~------~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~ 148 (349)
-..||++.|+.++... ..+||||| -+-||..|||+||+|+...+... ..
T Consensus 155 ~k~Is~etl~~ll~~~~~~~~~~~~iiDcR---------~pyEY~GGHIkgavnl~~~~~~~----------------~~ 209 (325)
T KOG3772|consen 155 LKYISPETLKGLLQGKFSDFFDKFIIIDCR---------YPYEYEGGHIKGAVNLYSKELLQ----------------DF 209 (325)
T ss_pred ccccCHHHHHHHHHhccccceeeEEEEEeC---------CcccccCcccccceecccHhhhh----------------hh
Confidence 4579999999988641 26799999 45699999999999998754221 11
Q ss_pred HHHc-CC---CCCCcEEEECCCCcchHHHHHHHHHH------------cCCCceeEeCCCHHHHHh
Q 018869 149 VSAL-GL---ENKDGLVVYDGKGIFSAARVWWMFRV------------FGHDRVWVLDGGLPRWRA 198 (349)
Q Consensus 149 ~~~~-gi---~~~~~VVvy~~~g~~~a~r~~~~L~~------------~G~~~V~~L~GG~~~W~~ 198 (349)
+... +. .+...+||||.....++.+++..|+. +-|..+++|+||+.+|..
T Consensus 210 f~~~~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~ 275 (325)
T KOG3772|consen 210 FLLKDGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFS 275 (325)
T ss_pred hccccccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHH
Confidence 1111 11 12346788887666678888888883 334579999999999974
No 103
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.86 E-value=7.2e-09 Score=104.37 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=60.5
Q ss_pred CCcEEEEeccCCCCCCCCChhhhhcCCCCC----ceecCcccccccCCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEECC
Q 018869 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPG----ALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG 165 (349)
Q Consensus 90 ~~~~iIDvR~~~~~~~~~~~~~y~~GHIPG----Ai~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi~~~~~VVvy~~ 165 (349)
++.+|||+| ++++|..||||| |+|+|+..+. ..+.. +++++++|+||.
T Consensus 406 ~~~~lIDVR---------~~~E~~~~hI~g~~~~a~niP~~~l~-----------------~~~~~--l~~~~~iivyC~ 457 (482)
T PRK01269 406 PDDVIIDIR---------SPDEQEDKPLKLEGVEVKSLPFYKLS-----------------TQFGD--LDQSKTYLLYCD 457 (482)
T ss_pred CCCEEEECC---------CHHHHhcCCCCCCCceEEECCHHHHH-----------------HHHhh--cCCCCeEEEECC
Confidence 367899999 789999999999 9999987542 22222 467789999998
Q ss_pred CCcchHHHHHHHHHHcCCCceeEeCC
Q 018869 166 KGIFSAARVWWMFRVFGHDRVWVLDG 191 (349)
Q Consensus 166 ~g~~~a~r~~~~L~~~G~~~V~~L~G 191 (349)
.|. +|..++..|+.+||+||++|.+
T Consensus 458 ~G~-rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 458 RGV-MSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred CCH-HHHHHHHHHHHcCCccEEecCC
Confidence 876 7999999999999999998853
No 104
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.85 E-value=3e-09 Score=107.09 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=56.2
Q ss_pred CCceEEeccCCCcccccCCCCCCCCCccccCC----CcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCCh
Q 018869 258 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPG----SKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTG 333 (349)
Q Consensus 258 ~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPG----A~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~vivyC~~G 333 (349)
.+.+|||+|+++|| ..||||| |+|+|+.++. +.+. .++++++||+||++|
T Consensus 406 ~~~~lIDVR~~~E~-----------~~~hI~g~~~~a~niP~~~l~-------------~~~~--~l~~~~~iivyC~~G 459 (482)
T PRK01269 406 PDDVIIDIRSPDEQ-----------EDKPLKLEGVEVKSLPFYKLS-------------TQFG--DLDQSKTYLLYCDRG 459 (482)
T ss_pred CCCEEEECCCHHHH-----------hcCCCCCCCceEEECCHHHHH-------------HHHh--hcCCCCeEEEECCCC
Confidence 46789999999999 6799999 9999987653 2233 267889999999999
Q ss_pred HHHHHHHHHHHhCcC
Q 018869 334 VTACILALVLFPVFF 348 (349)
Q Consensus 334 ~rA~~~~~~L~~~g~ 348 (349)
.||..++..|+..||
T Consensus 460 ~rS~~aa~~L~~~G~ 474 (482)
T PRK01269 460 VMSRLQALYLREQGF 474 (482)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999998
No 105
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.81 E-value=6.8e-09 Score=97.03 Aligned_cols=103 Identities=23% Similarity=0.307 Sum_probs=79.4
Q ss_pred CCCcccHHHHHHhcCC-CCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 018869 74 KEPVVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (349)
Q Consensus 74 ~~~lIs~~~L~~~l~~-~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~ 152 (349)
+.--||..++++.+++ ...++|||| |.-+|+..|+|+|+|||+.++..... ++..+.+
T Consensus 315 ~~~Rvsv~d~k~il~~~~~h~llDvR---------p~~~~eI~~lP~avNIPL~~l~~~~~------------~~~~~~~ 373 (427)
T KOG2017|consen 315 PDERVSVTDYKRILDSGAKHLLLDVR---------PSHEYEICRLPEAVNIPLKELRSRSG------------KKLQGDL 373 (427)
T ss_pred hhhcccHHHHHHHHhcCCCeEEEecc---------CcceEEEEecccccccchhhhhhhhh------------hhhcccc
Confidence 4557999999999987 568999999 88899999999999999988765421 1111111
Q ss_pred CCCCCCcEEEECCCCcchHHHHHHHHHHcCCC-ceeEeCCCHHHHHhC
Q 018869 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHD-RVWVLDGGLPRWRAS 199 (349)
Q Consensus 153 gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~-~V~~L~GG~~~W~~~ 199 (349)
-....+|+|.|..|+ .+.++.|+|+...++ +|+-+-||+.+|...
T Consensus 374 -~~~~~~I~ViCrrGN-dSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 374 -NTESKDIFVICRRGN-DSQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred -cccCCCEEEEeCCCC-chHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 123466999999887 799999999876654 677788999999864
No 106
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.33 E-value=1.1e-06 Score=81.27 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=70.2
Q ss_pred ccccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCC
Q 018869 243 HLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 322 (349)
Q Consensus 243 ~~~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~ 322 (349)
...++++++.+.+.++++++||+|..=|| ..||..||++.+...+-+- ++-+++... .-+
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~-----------~iG~F~gAv~p~~~tFref------P~~v~~~~~---~~~ 171 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEV-----------AIGHFEGAVEPDIETFREF------PAWVEENLD---LLK 171 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeE-----------eeeeecCccCCChhhhhhh------HHHHHHHHH---hcc
Confidence 45688999999999999999999999998 7899999999998766431 233344333 345
Q ss_pred CCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 323 EKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 323 ~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+|+|+.||.+|+|.--+..+|...||
T Consensus 172 ~KkVvmyCTGGIRCEKas~~m~~~GF 197 (308)
T COG1054 172 DKKVVMYCTGGIRCEKASAWMKENGF 197 (308)
T ss_pred CCcEEEEcCCceeehhhHHHHHHhcc
Confidence 77999999999999999999999898
No 107
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.28 E-value=1.3e-06 Score=82.06 Aligned_cols=87 Identities=18% Similarity=0.300 Sum_probs=68.5
Q ss_pred CCccccCHHHHHHHhhc-CCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcC
Q 018869 241 QPHLIWTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEG 319 (349)
Q Consensus 241 ~~~~~i~~~~v~~~~~~-~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~ 319 (349)
.++.+++..|.+..+++ ..+.+||+|++.|| ..-|+|+|+|||..++.+..+ +++...+
T Consensus 314 ~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~-----------eI~~lP~avNIPL~~l~~~~~-----~~~~~~~---- 373 (427)
T KOG2017|consen 314 EPDERVSVTDYKRILDSGAKHLLLDVRPSHEY-----------EICRLPEAVNIPLKELRSRSG-----KKLQGDL---- 373 (427)
T ss_pred ChhhcccHHHHHHHHhcCCCeEEEeccCcceE-----------EEEecccccccchhhhhhhhh-----hhhcccc----
Confidence 45668999999998876 56889999999999 678999999999988866433 1111111
Q ss_pred CCCCCCEEEEcCChHHHHHHHHHHHhCc
Q 018869 320 ISLEKPVVTACGTGVTACILALVLFPVF 347 (349)
Q Consensus 320 i~~~~~vivyC~~G~rA~~~~~~L~~~g 347 (349)
-...++|+|.|..|..|..+...|++.+
T Consensus 374 ~~~~~~I~ViCrrGNdSQ~Av~~Lre~~ 401 (427)
T KOG2017|consen 374 NTESKDIFVICRRGNDSQRAVRILREKF 401 (427)
T ss_pred cccCCCEEEEeCCCCchHHHHHHHHhhC
Confidence 1345689999999999999999998753
No 108
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.22 E-value=2.6e-06 Score=78.95 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=73.2
Q ss_pred CCcccHHHHHHhcCCC------CcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHH
Q 018869 75 EPVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAA 148 (349)
Q Consensus 75 ~~lIs~~~L~~~l~~~------~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~ 148 (349)
-+-|+++.|+..++.. +.+||||| =.-||..|||-.||||.-.+ ++.-.
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCR---------FeYEY~GGHIinaVNi~s~~----------------~l~~~ 295 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCR---------FEYEYRGGHIINAVNISSTK----------------KLGLL 295 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeec---------ceeeecCceeeeeeecchHH----------------HHHHH
Confidence 4579999999988642 47899999 34589999999999997542 34444
Q ss_pred HHHcCCCCCCcEEEECCCCcchHHHHHHHHHHcC------------CCceeEeCCCHHHHH
Q 018869 149 VSALGLENKDGLVVYDGKGIFSAARVWWMFRVFG------------HDRVWVLDGGLPRWR 197 (349)
Q Consensus 149 ~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G------------~~~V~~L~GG~~~W~ 197 (349)
+....++.-.-+|+.|.-...+|.+++..|+..- |..|++|+||+.+.-
T Consensus 296 F~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy 356 (427)
T COG5105 296 FRHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFY 356 (427)
T ss_pred HHhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHh
Confidence 4433344456688889877778999999887532 357999999998875
No 109
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=4e-05 Score=72.06 Aligned_cols=78 Identities=17% Similarity=0.268 Sum_probs=53.7
Q ss_pred ccCHHHHHHHhhc------CCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHc
Q 018869 245 IWTLEQVKRNIEE------GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE 318 (349)
Q Consensus 245 ~i~~~~v~~~~~~------~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~ 318 (349)
.|+.+.++.++.. ..++|||.|-+-|| ..|||+||+|++..+.+.. .|-..
T Consensus 157 ~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY-----------~GGHIkgavnl~~~~~~~~------------~f~~~ 213 (325)
T KOG3772|consen 157 YISPETLKGLLQGKFSDFFDKFIIIDCRYPYEY-----------EGGHIKGAVNLYSKELLQD------------FFLLK 213 (325)
T ss_pred ccCHHHHHHHHHhccccceeeEEEEEeCCcccc-----------cCcccccceecccHhhhhh------------hhccc
Confidence 6888999888753 23779999999999 5599999999997665432 22211
Q ss_pred -CCC---CCCCEEEEcC-ChHHHHHHHHHHHh
Q 018869 319 -GIS---LEKPVVTACG-TGVTACILALVLFP 345 (349)
Q Consensus 319 -~i~---~~~~vivyC~-~G~rA~~~~~~L~~ 345 (349)
+.. ...-+|+||- +-.|+=-++..|+.
T Consensus 214 ~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~ 245 (325)
T KOG3772|consen 214 DGVPSGSKRVILIFHCEFSQERGPKMARHLRN 245 (325)
T ss_pred cccccccCceeEEEEeeeccccCHHHHHHHHH
Confidence 122 2346899995 55666666666653
No 110
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.28 E-value=0.0059 Score=56.59 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=52.5
Q ss_pred CCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCccccccc---CCCCCC-CCCCH--------------HHHHHHHHH
Q 018869 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADR---TTNLPH-MLPSE--------------EAFAAAVSA 151 (349)
Q Consensus 90 ~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~---~~~~~~-~lp~~--------------~~~~~~~~~ 151 (349)
.+.-+|||| .+-+|..||.|+++|+|.-.=... ...+.. ..+.. +.++.+...
T Consensus 14 ~~~~lid~r---------ap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f 84 (334)
T COG2603 14 ADTPLIDVR---------APIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF 84 (334)
T ss_pred cCCceeecc---------chHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 367899999 788999999999999987320000 000000 11100 111111111
Q ss_pred cCCCCCCcEEEECCCCcchHHHHHHHH-HHcCCCceeEeCCCHHHHH
Q 018869 152 LGLENKDGLVVYDGKGIFSAARVWWMF-RVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 152 ~gi~~~~~VVvy~~~g~~~a~r~~~~L-~~~G~~~V~~L~GG~~~W~ 197 (349)
. -+.++-++|..|+.++-.....| ...|++ +--..||+.+..
T Consensus 85 ~---e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 85 Q---EENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred H---HhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 1 23455566777776776666556 556664 444557766643
No 111
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.25 E-value=0.034 Score=46.34 Aligned_cols=86 Identities=14% Similarity=0.236 Sum_probs=45.7
Q ss_pred cCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCC--cccCcccccCCCCCCCCHH---HHHHHHHHcCC
Q 018869 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGS--KCIPFPQMLDASQTLLPAD---ELKKRFEQEGI 320 (349)
Q Consensus 246 i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA--~~ip~~~l~~~~~~l~~~~---el~~~~~~~~i 320 (349)
++.+++..+.+.+=..|||-|+..|-.+...... ......-+|- +++|+.. +. .+.+ .+.+.|.
T Consensus 15 lt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~-~~~~a~~~gl~y~~iPv~~-----~~-~~~~~v~~f~~~~~---- 83 (135)
T TIGR01244 15 LTKADAAQAAQLGFKTVINNRPDREEESQPDFAQ-IKAAAEAAGVTYHHQPVTA-----GD-ITPDDVETFRAAIG---- 83 (135)
T ss_pred CCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHH-HHHHHHHCCCeEEEeecCC-----CC-CCHHHHHHHHHHHH----
Confidence 5667776654434456999999888644211000 0000000121 2343321 11 2333 3444454
Q ss_pred CCCCCEEEEcCChHHHHHHHHH
Q 018869 321 SLEKPVVTACGTGVTACILALV 342 (349)
Q Consensus 321 ~~~~~vivyC~~G~rA~~~~~~ 342 (349)
..++||++||.+|.|++.++..
T Consensus 84 ~~~~pvL~HC~sG~Rt~~l~al 105 (135)
T TIGR01244 84 AAEGPVLAYCRSGTRSSLLWGF 105 (135)
T ss_pred hCCCCEEEEcCCChHHHHHHHH
Confidence 2358999999999999887654
No 112
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.00 E-value=0.0044 Score=56.67 Aligned_cols=105 Identities=20% Similarity=0.296 Sum_probs=65.6
Q ss_pred ccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCccccc-----ccCCCCCCCCCCHHHHHHHHHHc
Q 018869 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVA-----DRTTNLPHMLPSEEAFAAAVSAL 152 (349)
Q Consensus 78 Is~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~-----~~~~~~~~~lp~~~~~~~~~~~~ 152 (349)
+|.+||...+..++++++|+| + +..||.+|+++-+..+. ....++...+|........-.+
T Consensus 6 ~s~~wlnr~l~~~nllllDCR---------s----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~- 71 (343)
T KOG1717|consen 6 KSVAWLNRQLELGNLLLLDCR---------S----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPAR- 71 (343)
T ss_pred HHHHHHHhhcccCceEEEecC---------C----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCcccccccccc-
Confidence 789999999998899999999 4 57899999999876532 2222233344433221111111
Q ss_pred CCCCCCcEEEECCCCc-----chHHHHH----HHHHHcCCCceeEeCCCHHHHHhC
Q 018869 153 GLENKDGLVVYDGKGI-----FSAARVW----WMFRVFGHDRVWVLDGGLPRWRAS 199 (349)
Q Consensus 153 gi~~~~~VVvy~~~g~-----~~a~r~~----~~L~~~G~~~V~~L~GG~~~W~~~ 199 (349)
-+...||.||.... ..++++. ..++..|. .++.|.||+...+++
T Consensus 72 --c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 72 --CGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAE 124 (343)
T ss_pred --CCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhh
Confidence 12367899986411 1123322 23455576 499999999988764
No 113
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.00 E-value=0.023 Score=45.69 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=41.1
Q ss_pred ccCHHHHHHHhhcCCceEEeccCCCcccccCCCC---CCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCC
Q 018869 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEP---RKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 321 (349)
Q Consensus 245 ~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~---~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~ 321 (349)
.++.+++.+..+.+=-.||+.|+..|-.+..... ......|- .-+|+|+.. +. .+.+.+.+...... .
T Consensus 14 Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl--~y~~iPv~~-----~~-~~~~~v~~f~~~l~-~ 84 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGL--QYVHIPVDG-----GA-ITEEDVEAFADALE-S 84 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT---EEEE----T-----TT---HHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCC--eEEEeecCC-----CC-CCHHHHHHHHHHHH-h
Confidence 4678888877665545799999987642211000 00000010 113444432 11 34444443322211 1
Q ss_pred CCCCEEEEcCChHHHHHHHHHHH
Q 018869 322 LEKPVVTACGTGVTACILALVLF 344 (349)
Q Consensus 322 ~~~~vivyC~~G~rA~~~~~~L~ 344 (349)
.++||.+||.+|.||+.+|..-+
T Consensus 85 ~~~Pvl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 85 LPKPVLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp TTTSEEEE-SCSHHHHHHHHHHH
T ss_pred CCCCEEEECCCChhHHHHHHHHh
Confidence 35799999999999998877654
No 114
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=95.91 E-value=0.016 Score=54.34 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=60.7
Q ss_pred cccCHHHHHHHhhc------CCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHH
Q 018869 244 LIWTLEQVKRNIEE------GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 317 (349)
Q Consensus 244 ~~i~~~~v~~~~~~------~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~ 317 (349)
.+|+.|.++..++. .+-+|||.|-+=|| +.|||-.|+||.- .++|.-.|..
T Consensus 242 ~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY-----------~GGHIinaVNi~s------------~~~l~~~F~h 298 (427)
T COG5105 242 QRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEY-----------RGGHIINAVNISS------------TKKLGLLFRH 298 (427)
T ss_pred hhcCHHHHHHHHhchhhhhhhceeEEeecceeee-----------cCceeeeeeecch------------HHHHHHHHHh
Confidence 36888988887763 13569999999999 6799999999874 3455666664
Q ss_pred cCCCCCCCEEEEcC-ChHHHHHHHHHHHhC
Q 018869 318 EGISLEKPVVTACG-TGVTACILALVLFPV 346 (349)
Q Consensus 318 ~~i~~~~~vivyC~-~G~rA~~~~~~L~~~ 346 (349)
+-++--.-+|++|. +.+||-.++.-|+..
T Consensus 299 kplThp~aLifHCEfSshRaP~LA~HlRN~ 328 (427)
T COG5105 299 KPLTHPRALIFHCEFSSHRAPRLAQHLRNM 328 (427)
T ss_pred ccccCceeEEEEeecccccchhHHHHHhhh
Confidence 44554567899996 678998898888754
No 115
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.81 E-value=0.26 Score=39.88 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=48.2
Q ss_pred ccCHHHHHHHhhcCCceEEeccCCCcccccCCCC-------CCCCCccccCCCcccCcccccCCCCCCCCHHH---HHHH
Q 018869 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEP-------RKGIRSGHVPGSKCIPFPQMLDASQTLLPADE---LKKR 314 (349)
Q Consensus 245 ~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~-------~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~e---l~~~ 314 (349)
-++++++.+....+=..||..|+..|=.|.-..- ..+....||| .. +.=+..++ +++.
T Consensus 15 Qi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iP------V~------~~~iT~~dV~~f~~A 82 (130)
T COG3453 15 QISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIP------VT------GGGITEADVEAFQRA 82 (130)
T ss_pred CCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEee------cC------CCCCCHHHHHHHHHH
Confidence 3567777766554444689999987754432110 0112223444 21 11123334 3444
Q ss_pred HHHcCCCCCCCEEEEcCChHHHHHHHHHHH
Q 018869 315 FEQEGISLEKPVVTACGTGVTACILALVLF 344 (349)
Q Consensus 315 ~~~~~i~~~~~vivyC~~G~rA~~~~~~L~ 344 (349)
+.+ .+.||..||.+|.||..+|..-.
T Consensus 83 l~e----aegPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 83 LDE----AEGPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred HHH----hCCCEEeeecCCchHHHHHHHHH
Confidence 443 46799999999999998876543
No 116
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=92.21 E-value=0.44 Score=46.91 Aligned_cols=100 Identities=27% Similarity=0.340 Sum_probs=60.8
Q ss_pred ccHHHHHHhcC--CC--CcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc-
Q 018869 78 VSVDWLHANLR--EP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL- 152 (349)
Q Consensus 78 Is~~~L~~~l~--~~--~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~- 152 (349)
|++-+|.++-. .+ +..|+|+| |.+.|..||+-.|.|++-.- |+..+++|+..+..+
T Consensus 309 isv~el~~~~~~~~~~VrFFiVDcR---------paeqynaGHlstaFhlDc~l----------mlqeP~~Fa~av~sLl 369 (669)
T KOG3636|consen 309 ISVIELTSHDEISSGSVRFFIVDCR---------PAEQYNAGHLSTAFHLDCVL----------MLQEPEKFAIAVNSLL 369 (669)
T ss_pred hhHHHhhcccccccCceEEEEEecc---------chhhcccccchhhhcccHHH----------HhcCHHHHHHHHHHHH
Confidence 55555544322 22 36699999 89999999999999998754 445567888766543
Q ss_pred -----CCCCC-----CcEEEECCCCcch----HHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 153 -----GLENK-----DGLVVYDGKGIFS----AARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 153 -----gi~~~-----~~VVvy~~~g~~~----a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
-|..+ +.+.+. +.|... .--+..++.+-+-.-|.++.||+.+..
T Consensus 370 ~aqrqtie~~s~aggeHlcfm-GsGr~EED~YmnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 370 CAQRQTIERDSNAGGEHLCFM-GSGRDEEDNYMNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHhhhccccCCcceEEEe-ccCcchHHHHHHHHHHHHHhcCceEEEEecchHHHHH
Confidence 23333 344444 333211 112222333334446999999998765
No 117
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=87.94 E-value=2.2 Score=34.21 Aligned_cols=84 Identities=23% Similarity=0.148 Sum_probs=36.1
Q ss_pred cccHHHHHHhcCCCCcEEEEeccCCCCCCCC-Chh----hhhcCCCCCceecCcccccccCCCCCCCCCCH---HHHHHH
Q 018869 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRN-PFQ----EYQVAHIPGALFFDVDGVADRTTNLPHMLPSE---EAFAAA 148 (349)
Q Consensus 77 lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~-~~~----~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~---~~~~~~ 148 (349)
-++++++.++...+=-.||+.|..- +..+ +.. +-...+==.-+++|+.. .-++. +.|.+.
T Consensus 14 Q~~~~d~~~la~~GfktVInlRpd~--E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~----------~~~~~~~v~~f~~~ 81 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLRPDG--EEPGQPSSAEEAAAAEALGLQYVHIPVDG----------GAITEEDVEAFADA 81 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S-TT--STTT-T-HHCHHHHHHHCT-EEEE----T----------TT--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCC--CCCCCCCHHHHHHHHHHcCCeEEEeecCC----------CCCCHHHHHHHHHH
Confidence 3789999887765435799999211 1000 000 00000000235566542 11233 345555
Q ss_pred HHHcCCCCCCcEEEECCCCcchHHHHHHH
Q 018869 149 VSALGLENKDGLVVYDGKGIFSAARVWWM 177 (349)
Q Consensus 149 ~~~~gi~~~~~VVvy~~~g~~~a~r~~~~ 177 (349)
+..+ +.+|++||..|. ++..+|.+
T Consensus 82 l~~~----~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 82 LESL----PKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHTT----TTSEEEE-SCSH-HHHHHHHH
T ss_pred HHhC----CCCEEEECCCCh-hHHHHHHH
Confidence 5543 468999999876 66655443
No 118
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=86.85 E-value=0.14 Score=51.78 Aligned_cols=95 Identities=20% Similarity=0.147 Sum_probs=60.8
Q ss_pred CCcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHcCC
Q 018869 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (349)
Q Consensus 75 ~~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~gi 154 (349)
-+-||++++... +.+.++|.| ...+|..+|+++++|+|+. ..+. +++...--.++
T Consensus 621 ~prmsAedl~~~---~~l~v~d~r---------~~~ef~r~~~s~s~nip~~-~~ea------------~l~~~~~l~~~ 675 (725)
T KOG1093|consen 621 CPRISAEDLIWL---KMLYVLDTR---------QESEFQREHFSDSINIPFN-NHEA------------DLDWLRFLPGI 675 (725)
T ss_pred CccccHHHHHHH---HHHHHHhHH---------HHHHHHHhhccccccCCcc-chHH------------HHHHhhcchHh
Confidence 345777777655 357899999 6889999999999999997 2111 11111100011
Q ss_pred --CCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHH
Q 018869 155 --ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPR 195 (349)
Q Consensus 155 --~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~ 195 (349)
..+..+|+|.. +.-.+++....+..+-+.++-++.+|+++
T Consensus 676 ~~~~~~~~v~~~~-~~K~~~e~~~~~~~mk~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 676 VCSEGKKCVVVGK-NDKHAAERLTELYVMKVPRICILHDGFNN 717 (725)
T ss_pred HHhhCCeEEEecc-chHHHHHHhhHHHHhcccHHHHHHHHHhh
Confidence 23456677754 33356666666666667778889988874
No 119
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=85.82 E-value=5 Score=33.21 Aligned_cols=53 Identities=26% Similarity=0.425 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCCCCcEEEECCCCcchHHHHHHHH-HHcCCCceeEeCCCHHHHHhCCCCcc
Q 018869 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMF-RVFGHDRVWVLDGGLPRWRASGYDVE 204 (349)
Q Consensus 143 ~~~~~~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L-~~~G~~~V~~L~GG~~~W~~~G~pv~ 204 (349)
+.|.+.+.. .+.+|++||..|. ++..+|.++ ...|.+.-.++. .-++.|+.++
T Consensus 76 ~~f~~~~~~----~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~----~~~~~G~~~~ 129 (135)
T TIGR01244 76 ETFRAAIGA----AEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVR----RAQAAGYDLS 129 (135)
T ss_pred HHHHHHHHh----CCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHH----HHHHcCCCcc
Confidence 445555653 4588999999887 666665443 444664323332 2244566554
No 120
>PLN02727 NAD kinase
Probab=81.98 E-value=2.5 Score=45.73 Aligned_cols=88 Identities=25% Similarity=0.198 Sum_probs=44.7
Q ss_pred ccCHHHHHHHhhcCCceEEeccCCCcccccCCC-CCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCC
Q 018869 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPE-PRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 323 (349)
Q Consensus 245 ~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~-~~~~~~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~ 323 (349)
-++.++++...+.+=-.||+.|+..|-.+.... -....+..-| .-+|+|... ....+.+++.+..+...-...
T Consensus 268 Qpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL-~yVhIPVs~-----~~apt~EqVe~fa~~l~~slp 341 (986)
T PLN02727 268 QVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKI-EVVKIPVEV-----RTAPSAEQVEKFASLVSDSSK 341 (986)
T ss_pred CCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCC-eEEEeecCC-----CCCCCHHHHHHHHHHHHhhcC
Confidence 467888877665543469999998773111100 0000000000 123444321 122345555554443201346
Q ss_pred CCEEEEcCChHHHHH
Q 018869 324 KPVVTACGTGVTACI 338 (349)
Q Consensus 324 ~~vivyC~~G~rA~~ 338 (349)
+||++||.+|.+.+-
T Consensus 342 kPVLvHCKSGarRAG 356 (986)
T PLN02727 342 KPIYLHSKEGVWRTS 356 (986)
T ss_pred CCEEEECCCCCchHH
Confidence 899999999995543
No 121
>COG2603 Predicted ATPase [General function prediction only]
Probab=78.59 E-value=1.1 Score=41.84 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=49.2
Q ss_pred HHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCccccc------CCCCC-CCC----------HHHH
Q 018869 249 EQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQML------DASQT-LLP----------ADEL 311 (349)
Q Consensus 249 ~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~------~~~~~-l~~----------~~el 311 (349)
+++...+. .+..|||||.+.|| ..||.|+++|+|.-.-- ...++ .-+ -.++
T Consensus 6 q~~~~~~~-~~~~lid~rap~ef-----------~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i 73 (334)
T COG2603 6 QDYRALLL-ADTPLIDVRAPIEF-----------ENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEI 73 (334)
T ss_pred HHHHHHHh-cCCceeeccchHHH-----------hcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHH
Confidence 33444433 34679999999999 78999999999963210 00111 001 0111
Q ss_pred H-HHHHHc-CCCCCCCEEEEcC-ChHHHHHHHHHH-HhCc
Q 018869 312 K-KRFEQE-GISLEKPVVTACG-TGVTACILALVL-FPVF 347 (349)
Q Consensus 312 ~-~~~~~~-~i~~~~~vivyC~-~G~rA~~~~~~L-~~~g 347 (349)
+ .+++.. ..-.+.|+-++|. +|.|+-....+| ...|
T Consensus 74 ~~~~l~ask~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g 113 (334)
T COG2603 74 RQQRLEASKAFQEENPVGILCARGGLRSKIVQKWLGYAAG 113 (334)
T ss_pred HHHHHHHHHHHHHhCCcceeeccccchhHHHHHHHHHHHH
Confidence 1 122210 1223567777785 668888888777 4444
No 122
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=77.17 E-value=1.7 Score=37.23 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=26.7
Q ss_pred cCCCCCCcEEEECCC----CcchHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 152 LGLENKDGLVVYDGK----GIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 152 ~gi~~~~~VVvy~~~----g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
+|++++..+++.+.. .++....++.+|+.+|..++-.||||-..-.
T Consensus 95 iG~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~l 144 (170)
T PF09992_consen 95 IGVTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSSTL 144 (170)
T ss_dssp EEE-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--E
T ss_pred EEEeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceEE
Confidence 466666666666433 2457888889999999999999999966543
No 123
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=75.33 E-value=3.6 Score=33.69 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=19.8
Q ss_pred CCCCCCEEEEcCChH-HHHH--HHHHHHhCcC
Q 018869 320 ISLEKPVVTACGTGV-TACI--LALVLFPVFF 348 (349)
Q Consensus 320 i~~~~~vivyC~~G~-rA~~--~~~~L~~~g~ 348 (349)
+..+++|+|+|..|. ||.. +++.+...||
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 566789999999995 7754 3344544554
No 124
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=74.66 E-value=8.1 Score=31.37 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=13.8
Q ss_pred CCCCCEEEEcCChH-HHH
Q 018869 321 SLEKPVVTACGTGV-TAC 337 (349)
Q Consensus 321 ~~~~~vivyC~~G~-rA~ 337 (349)
..+++|+|+|..|. ||.
T Consensus 79 ~~~~~vlVHC~~G~~Rs~ 96 (139)
T cd00127 79 EKGGKVLVHCLAGVSRSA 96 (139)
T ss_pred hcCCcEEEECCCCCchhH
Confidence 34689999999996 765
No 125
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=72.28 E-value=10 Score=39.02 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=22.2
Q ss_pred CcEEEECCCCc--chHHHHHHHHHHcCCCceeEe
Q 018869 158 DGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVL 189 (349)
Q Consensus 158 ~~VVvy~~~g~--~~a~r~~~~L~~~G~~~V~~L 189 (349)
.+|+|+|+.|+ ..+-.++..|...|++ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 57889987653 2455677788899995 6654
No 126
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.15 E-value=19 Score=29.34 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=43.7
Q ss_pred CcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhh-------hcCCCCCceecCcccccccCCCCCCCCCCHHHHHHH
Q 018869 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY-------QVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAA 148 (349)
Q Consensus 76 ~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y-------~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~ 148 (349)
+-++++++.+.....=..||.-|.+-.. .....| +..-+. -.+||+..-. -.-.+.+.|++.
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRPDgEe---~~QP~~~~i~~aa~~aGl~-y~~iPV~~~~-------iT~~dV~~f~~A 82 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRPDGEE---PGQPGFAAIAAAAEAAGLT-YTHIPVTGGG-------ITEADVEAFQRA 82 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCCCCCC---CCCCChHHHHHHHHhcCCc-eEEeecCCCC-------CCHHHHHHHHHH
Confidence 3478888877655433568999932111 011111 111122 3344443200 011124567777
Q ss_pred HHHcCCCCCCcEEEECCCCcchHHHHHH
Q 018869 149 VSALGLENKDGLVVYDGKGIFSAARVWW 176 (349)
Q Consensus 149 ~~~~gi~~~~~VVvy~~~g~~~a~r~~~ 176 (349)
+... +-+|+.||.+|. ++..+|.
T Consensus 83 l~ea----egPVlayCrsGt-Rs~~ly~ 105 (130)
T COG3453 83 LDEA----EGPVLAYCRSGT-RSLNLYG 105 (130)
T ss_pred HHHh----CCCEEeeecCCc-hHHHHHH
Confidence 7764 588999999875 5655543
No 127
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=58.62 E-value=19 Score=31.24 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHc--CCCCCCcEEEECCCCcchHHH--HHHHHHHcCCC
Q 018869 139 LPSEEAFAAAVSAL--GLENKDGLVVYDGKGIFSAAR--VWWMFRVFGHD 184 (349)
Q Consensus 139 lp~~~~~~~~~~~~--gi~~~~~VVvy~~~g~~~a~r--~~~~L~~~G~~ 184 (349)
.|+.+++.+.+..+ -..+..+|||.|..|..|++. ++|+|.+.|..
T Consensus 85 ~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 85 VPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 34445555544443 234556899999877555544 34677776654
No 128
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=56.06 E-value=81 Score=29.19 Aligned_cols=29 Identities=17% Similarity=-0.129 Sum_probs=26.7
Q ss_pred CCCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 320 ISLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 320 i~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+.++..+++||.+-.+..-....|++.||
T Consensus 185 Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 185 LKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred hCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 66788999999999999999999999988
No 129
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=52.05 E-value=33 Score=32.01 Aligned_cols=47 Identities=15% Similarity=0.045 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCC
Q 018869 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 191 (349)
Q Consensus 143 ~~~~~~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~G 191 (349)
.-|.+.+...++..+++++|.+.+| .|.-+++.|...|..+|.+++=
T Consensus 108 ~Gf~~~L~~~~~~~~~~vlilGaGG--aarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 108 IAIAKLLASYQVPPDLVVALRGSGG--MAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCcH--HHHHHHHHHHHCCCCEEEEEeC
Confidence 3566677666776666788886544 3545667788999999999984
No 130
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=51.73 E-value=24 Score=29.89 Aligned_cols=39 Identities=31% Similarity=0.370 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEcCCh--HHHHHHHHHHHhCc
Q 018869 308 ADELKKRFEQEGISLEKPVVTACGTG--VTACILALVLFPVF 347 (349)
Q Consensus 308 ~~el~~~~~~~~i~~~~~vivyC~~G--~rA~~~~~~L~~~g 347 (349)
.+.++++|.-.--.+ .|++++|..| -+.-.++++|..+|
T Consensus 110 ~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lG 150 (164)
T PF13350_consen 110 AEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLG 150 (164)
T ss_dssp HHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcC
Confidence 566777666431133 6999999987 34445666676666
No 131
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=48.37 E-value=38 Score=27.30 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=18.4
Q ss_pred CCCCcEEEECCCCcchHHH--HHHHHHHcCC
Q 018869 155 ENKDGLVVYDGKGIFSAAR--VWWMFRVFGH 183 (349)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~r--~~~~L~~~G~ 183 (349)
..+.+|+|+|..|..++.. +++++...|+
T Consensus 79 ~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 79 EKGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred hcCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 3467899999888655553 3445555544
No 132
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=48.13 E-value=44 Score=29.98 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCCCCcEEEECCCCcchHHH--------------------HHHHHHHcCCCceeEeCC-CHHHHHh
Q 018869 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAAR--------------------VWWMFRVFGHDRVWVLDG-GLPRWRA 198 (349)
Q Consensus 142 ~~~~~~~~~~~gi~~~~~VVvy~~~g~~~a~r--------------------~~~~L~~~G~~~V~~L~G-G~~~W~~ 198 (349)
+...+.+++.+.+.+.+.|+=.+++.++.++. +...|+.+|++||.+..| |+.+|..
T Consensus 58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 44678888889999999888776655544333 344588999999886544 6667754
No 133
>PLN02727 NAD kinase
Probab=46.80 E-value=75 Score=34.90 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=44.0
Q ss_pred CcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhh---hhcCCCCCceecCcccccccCCCCCCCCCCHHHHHHHHHHc
Q 018869 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQE---YQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (349)
Q Consensus 76 ~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~---y~~GHIPGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~~~~~ 152 (349)
.-+++++++.+.+.+=-.||+.|..-...+....++ -+..-| .-+++|+.. ...|+.++++++...+
T Consensus 267 gQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL-~yVhIPVs~---------~~apt~EqVe~fa~~l 336 (986)
T PLN02727 267 GQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKI-EVVKIPVEV---------RTAPSAEQVEKFASLV 336 (986)
T ss_pred CCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCC-eEEEeecCC---------CCCCCHHHHHHHHHHH
Confidence 358888887766553246999993111100000000 000101 234555431 1345566666655554
Q ss_pred CCCCCCcEEEECCCCcchH
Q 018869 153 GLENKDGLVVYDGKGIFSA 171 (349)
Q Consensus 153 gi~~~~~VVvy~~~g~~~a 171 (349)
.-...++|++||..|..++
T Consensus 337 ~~slpkPVLvHCKSGarRA 355 (986)
T PLN02727 337 SDSSKKPIYLHSKEGVWRT 355 (986)
T ss_pred HhhcCCCEEEECCCCCchH
Confidence 2245699999999886443
No 134
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=44.78 E-value=33 Score=29.67 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCCCCCCEEEEcCCh-HHHHH-HHHHHHhCc
Q 018869 309 DELKKRFEQEGISLEKPVVTACGTG-VTACI-LALVLFPVF 347 (349)
Q Consensus 309 ~el~~~~~~~~i~~~~~vivyC~~G-~rA~~-~~~~L~~~g 347 (349)
++|.+.+. .++.|+++|.+| -|+.+ ++-.|-++|
T Consensus 124 ~eL~~~L~-----~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 124 EELAARLE-----NGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHHHHHH-----TT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHH-----cCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 45555554 478999999987 45554 555554443
No 135
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=42.41 E-value=55 Score=30.01 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=18.9
Q ss_pred CCCCCEEEEcCCh-HHH-HHHHHHHHhCcC
Q 018869 321 SLEKPVVTACGTG-VTA-CILALVLFPVFF 348 (349)
Q Consensus 321 ~~~~~vivyC~~G-~rA-~~~~~~L~~~g~ 348 (349)
..+++|+|+|..| .|+ .+++.+|-+.|+
T Consensus 168 ~~g~~VaVHC~AGlGRTGtl~AayLI~~Gm 197 (241)
T PTZ00393 168 KNNRAVAVHCVAGLGRAPVLASIVLIEFGM 197 (241)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4678999999877 344 455566655665
No 136
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=40.64 E-value=59 Score=27.85 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=11.8
Q ss_pred CCCCCCEEEEcCCh
Q 018869 320 ISLEKPVVTACGTG 333 (349)
Q Consensus 320 i~~~~~vivyC~~G 333 (349)
+..+.+|+|+|..|
T Consensus 95 ~~~g~~V~VHC~aG 108 (166)
T PTZ00242 95 STPPETIAVHCVAG 108 (166)
T ss_pred ccCCCeEEEECCCC
Confidence 35688999999988
No 137
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=39.81 E-value=5.1 Score=40.97 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=31.2
Q ss_pred ccCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCcc
Q 018869 245 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFP 296 (349)
Q Consensus 245 ~i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~ 296 (349)
.++.+++... +...++|.|...|| +.+|+++++|+|+.
T Consensus 623 rmsAedl~~~---~~l~v~d~r~~~ef-----------~r~~~s~s~nip~~ 660 (725)
T KOG1093|consen 623 RISAEDLIWL---KMLYVLDTRQESEF-----------QREHFSDSINIPFN 660 (725)
T ss_pred cccHHHHHHH---HHHHHHhHHHHHHH-----------HHhhccccccCCcc
Confidence 4566666554 35679999999999 88999999999997
No 138
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=37.57 E-value=1.1e+02 Score=26.49 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=14.3
Q ss_pred CCCCCCEEEEcCCh--HHHHHHH
Q 018869 320 ISLEKPVVTACGTG--VTACILA 340 (349)
Q Consensus 320 i~~~~~vivyC~~G--~rA~~~~ 340 (349)
+..++.|+|+|..| -++++++
T Consensus 102 ~~~g~kVvVHC~~GigRSgtvia 124 (180)
T COG2453 102 LSKGKKVVVHCQGGIGRSGTVIA 124 (180)
T ss_pred HhcCCeEEEEcCCCCchHHHHHH
Confidence 45667999999877 3444443
No 139
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=36.81 E-value=76 Score=29.88 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCCC---CCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCH
Q 018869 142 EEAFAAAVSALGLEN---KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (349)
Q Consensus 142 ~~~~~~~~~~~gi~~---~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~ 193 (349)
-.-|.+.+...++.. ++.+++.+. |+ .|.-+.+.|...|..++.++|=..
T Consensus 108 ~~G~~~~L~~~~~~~~~~~~~vlilGA-GG-AarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 108 GIGFLRALKEFGLPVDVTGKRVLILGA-GG-AARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred HHHHHHHHHhcCCCcccCCCEEEEECC-cH-HHHHHHHHHHHcCCCEEEEEeCCH
Confidence 346778888766432 467888855 44 455577889999999999998643
No 140
>PLN02645 phosphoglycolate phosphatase
Probab=36.56 E-value=1.5e+02 Score=28.08 Aligned_cols=111 Identities=11% Similarity=0.178 Sum_probs=55.4
Q ss_pred CcccHHHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCC-CCCceecCcccccccCCCC----CCCCCCHHHHHHHHH
Q 018869 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAH-IPGALFFDVDGVADRTTNL----PHMLPSEEAFAAAVS 150 (349)
Q Consensus 76 ~lIs~~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GH-IPGAi~ip~~~l~~~~~~~----~~~lp~~~~~~~~~~ 150 (349)
...+.+.+.+++.+-+.+++|+- --.+..+| |||+... +..+......+ .....+.+++.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~D~D----------Gtl~~~~~~~~ga~e~-l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~ 82 (311)
T PLN02645 14 QLLTLENADELIDSVETFIFDCD----------GVIWKGDKLIEGVPET-LDMLRSMGKKLVFVTNNSTKSRAQYGKKFE 82 (311)
T ss_pred ccCCHHHHHHHHHhCCEEEEeCc----------CCeEeCCccCcCHHHH-HHHHHHCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 34566677777776678999984 12333333 6666332 11121110000 012334566777778
Q ss_pred HcCCCCCCcEEEECCCCcchHHHHHHHHHHcCC---CceeEeCCC-H-HHHHhCCCCc
Q 018869 151 ALGLENKDGLVVYDGKGIFSAARVWWMFRVFGH---DRVWVLDGG-L-PRWRASGYDV 203 (349)
Q Consensus 151 ~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~---~~V~~L~GG-~-~~W~~~G~pv 203 (349)
.+|++.....|+-. ..-+...|+..++ ++|+++... . ..-...|..+
T Consensus 83 ~lGi~~~~~~I~ts------~~~~~~~l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~ 134 (311)
T PLN02645 83 SLGLNVTEEEIFSS------SFAAAAYLKSINFPKDKKVYVIGEEGILEELELAGFQY 134 (311)
T ss_pred HCCCCCChhhEeeh------HHHHHHHHHhhccCCCCEEEEEcCHHHHHHHHHCCCEE
Confidence 88987554444331 1233344555554 347777542 2 2223456544
No 141
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=36.54 E-value=60 Score=24.31 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=12.9
Q ss_pred CCCCEEEEcCChH-HHHH
Q 018869 322 LEKPVVTACGTGV-TACI 338 (349)
Q Consensus 322 ~~~~vivyC~~G~-rA~~ 338 (349)
.+.||+|+|..|. |++.
T Consensus 38 ~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00404 38 SSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCCEEEEeCCCCChhhH
Confidence 3679999999885 5543
No 142
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=36.54 E-value=60 Score=24.31 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=12.9
Q ss_pred CCCCEEEEcCChH-HHHH
Q 018869 322 LEKPVVTACGTGV-TACI 338 (349)
Q Consensus 322 ~~~~vivyC~~G~-rA~~ 338 (349)
.+.||+|+|..|. |++.
T Consensus 38 ~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00012 38 SSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred CCCCEEEEeCCCCChhhH
Confidence 3679999999885 5543
No 143
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=35.45 E-value=1.7e+02 Score=27.91 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=29.5
Q ss_pred EEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCC
Q 018869 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (349)
Q Consensus 160 VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G 200 (349)
|+|.+.+| -.+.++..|...|+.++.++|.+.-.+..-+
T Consensus 2 VLIvGaGG--LGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~ 40 (307)
T cd01486 2 CLLLGAGT--LGCNVARNLLGWGVRHITFVDSGKVSYSNPV 40 (307)
T ss_pred EEEECCCH--HHHHHHHHHHHcCCCeEEEECCCEeccccCC
Confidence 66775544 4677888899999999999999876665433
No 144
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=34.65 E-value=86 Score=25.31 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=20.7
Q ss_pred CCCCCcEEEECCCCcchHHH--HHHHHHHcCCC
Q 018869 154 LENKDGLVVYDGKGIFSAAR--VWWMFRVFGHD 184 (349)
Q Consensus 154 i~~~~~VVvy~~~g~~~a~r--~~~~L~~~G~~ 184 (349)
+..+.+|+|+|..|..++.- +++++...|++
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 45678899999888545443 44556666653
No 145
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=34.36 E-value=35 Score=27.43 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCCCCCCEEEEcCChH-HHH
Q 018869 309 DELKKRFEQEGISLEKPVVTACGTGV-TAC 337 (349)
Q Consensus 309 ~el~~~~~~~~i~~~~~vivyC~~G~-rA~ 337 (349)
+.+.+.+.+. +..+.+|+|+|..|. ||+
T Consensus 60 ~~~~~~i~~~-~~~~~~VlVHC~~G~~RS~ 88 (133)
T PF00782_consen 60 DQAVEFIENA-ISEGGKVLVHCKAGLSRSG 88 (133)
T ss_dssp HHHHHHHHHH-HHTTSEEEEEESSSSSHHH
T ss_pred HHHHHhhhhh-hcccceeEEEeCCCcccch
Confidence 4444555543 456789999999985 543
No 146
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=34.35 E-value=85 Score=29.51 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCC-CCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCC
Q 018869 143 EAFAAAVSALGLE-NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 191 (349)
Q Consensus 143 ~~~~~~~~~~gi~-~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~G 191 (349)
.-|.+.+...+++ ++++++|.+. |+ .+.-+++.|...|..++.+++=
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGa-GG-aarAi~~~l~~~g~~~i~i~nR 156 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGA-GG-ASTAIGAQGAIEGLKEIKLFNR 156 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECC-cH-HHHHHHHHHHHCCCCEEEEEeC
Confidence 3566677666664 4567888865 43 2433556688889999999983
No 147
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=33.84 E-value=35 Score=29.25 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHcCCCCCCCEEEEcCCh-HHHHHHHHHHHhC
Q 018869 306 LPADELKKRFEQEGISLEKPVVTACGTG-VTACILALVLFPV 346 (349)
Q Consensus 306 ~~~~el~~~~~~~~i~~~~~vivyC~~G-~rA~~~~~~L~~~ 346 (349)
.+.+.+.+.+.-.-=+...||.++|.+| .|...+...|+.+
T Consensus 74 ~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~ 115 (164)
T PF03162_consen 74 ISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKL 115 (164)
T ss_dssp --HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHH
No 148
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=33.17 E-value=74 Score=32.67 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCH
Q 018869 138 MLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (349)
Q Consensus 138 ~lp~~~~~~~~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~ 193 (349)
++...+++.+++.-+.-..+.++|||-+.-- .+--++..|..+|| ++..|.||-
T Consensus 498 m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk-~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 498 MVSEDEKRKKLIEILESNFDPPIIIFVNTKK-GADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred EecchHHHHHHHHHHHhCCCCCEEEEEechh-hHHHHHHHHhhccc-eEEEeeCCc
Confidence 4555666766666554446778888755332 46677889999999 699999984
No 149
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=32.06 E-value=71 Score=32.02 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=27.0
Q ss_pred CCCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 320 ISLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 320 i~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
+.+++||++...+|+.+.+.-.+|+.+|+
T Consensus 109 ~~~d~Pv~l~~~~~H~~~~Ns~al~~~gi 137 (479)
T cd01300 109 VSPDRPVLLLRRDGHSAWVNSAALRLAGI 137 (479)
T ss_pred ccCCCcEEEEccCchHHHHHHHHHHHcCC
Confidence 67899999999999999999999999986
No 150
>PF07152 YaeQ: YaeQ protein; InterPro: IPR009822 This family consists of several hypothetical bacterial proteins of around 180 residues in length, which are often known as YaeQ. YaeQ is homologous to RfaH, a specialised transcription elongation protein. YaeQ is known to compensate for loss of RfaH function [].; PDB: 3C0U_B 2OT9_A 2G3W_B.
Probab=31.52 E-value=1e+02 Score=26.84 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCcEEEECCCCcchHHHHHHHHHH---cCCCceeEeC
Q 018869 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRV---FGHDRVWVLD 190 (349)
Q Consensus 139 lp~~~~~~~~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~---~G~~~V~~L~ 190 (349)
.|+++.+.+..+.. +.|+||+. + +++.+||.-.. ..++|+.++.
T Consensus 86 ~Pd~kRi~kA~~~A-----~~V~vy~y-~--~~~~~Ww~~~~~~l~r~~Nl~V~~ 132 (174)
T PF07152_consen 86 QPDEKRIKKASGRA-----DQVVVYTY-G--RAADVWWQQNKGKLSRLKNLSVFQ 132 (174)
T ss_dssp ---HHHHHHHHHHE-----EEEEEEE--C--HHHHHHHHHHHHHHTT-TTEEEEE
T ss_pred CCCHHHHHHHhccC-----CeEEEEEc-C--cHHHHHHHHhHHHHhCCCCcEEEE
Confidence 57888899988865 67999977 4 67888887633 4678877765
No 151
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.19 E-value=59 Score=32.10 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCCCCCEEEEcCChHHHHHHHHHHHhCcCC
Q 018869 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALVLFPVFFL 349 (349)
Q Consensus 309 ~el~~~~~~~~i~~~~~vivyC~~G~rA~~~~~~L~~~g~~ 349 (349)
..|-.++.+ ..+.++|++|++-..+-.++.+|+.+||.
T Consensus 289 ~yLV~ll~e---~~g~s~iVF~~t~~tt~~la~~L~~lg~~ 326 (476)
T KOG0330|consen 289 TYLVYLLNE---LAGNSVIVFCNTCNTTRFLALLLRNLGFQ 326 (476)
T ss_pred hhHHHHHHh---hcCCcEEEEEeccchHHHHHHHHHhcCcc
Confidence 345555553 34589999999999999999999999983
No 152
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=30.87 E-value=1.1e+02 Score=28.07 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHcC--CCCCCcEEEECCCCcchHHH-HHHHHHHcCC
Q 018869 138 MLPSEEAFAAAVSALG--LENKDGLVVYDGKGIFSAAR-VWWMFRVFGH 183 (349)
Q Consensus 138 ~lp~~~~~~~~~~~~g--i~~~~~VVvy~~~g~~~a~r-~~~~L~~~G~ 183 (349)
..|+.+.+++++..+. +..+..|+|.|..|..++.- ++..|...|+
T Consensus 149 ~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~~Gm 197 (241)
T PTZ00393 149 DAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEFGM 197 (241)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4566665555555432 24667899999887655544 3344444565
No 153
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=28.09 E-value=1.5e+02 Score=26.92 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHcCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeC
Q 018869 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLD 190 (349)
Q Consensus 139 lp~~~~~~~~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~ 190 (349)
-|+++.|++.+...||+.-...+++|++.. -...-+..|..-|.++.
T Consensus 160 KP~~~afE~a~k~agi~~p~~t~FfDDS~~-----NI~~ak~vGl~tvlv~~ 206 (244)
T KOG3109|consen 160 KPSEEAFEKAMKVAGIDSPRNTYFFDDSER-----NIQTAKEVGLKTVLVGR 206 (244)
T ss_pred cCCHHHHHHHHHHhCCCCcCceEEEcCchh-----hHHHHHhccceeEEEEe
Confidence 377889999999999997777888877542 22234678887665553
No 154
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=27.96 E-value=1.5e+02 Score=28.69 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCC
Q 018869 138 MLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 191 (349)
Q Consensus 138 ~lp~~~~~~~~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~G 191 (349)
..|++|.|+.++. .+|+|.+.+| -.+.+..-|...||.++.++|=
T Consensus 28 f~~~~e~l~~l~~-------~kiLviGAGG--LGCElLKnLal~gF~~~~viDm 72 (422)
T KOG2015|consen 28 FEPSEENLEFLQD-------CKILVIGAGG--LGCELLKNLALSGFRQLHVIDM 72 (422)
T ss_pred CCCCHHHHHHHhh-------CcEEEEccCc--ccHHHHHhHHhhccceeEEEee
Confidence 4567777776654 6678886544 4677777888899999998884
No 155
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=27.43 E-value=1.4e+02 Score=27.96 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCC-CCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCC
Q 018869 143 EAFAAAVSALGL-ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 191 (349)
Q Consensus 143 ~~~~~~~~~~gi-~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~G 191 (349)
.-|...+...+. .++++++|.+.+| .+.-+++.|...|..++.++|=
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGG--aarAi~~aL~~~g~~~i~i~nR 159 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGG--VGNAVAYALVTHGVQKLQVADL 159 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcH--HHHHHHHHHHHCCCCEEEEEcC
Confidence 346666655332 2456788886544 3444566788899999999984
No 156
>COG4681 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.34 E-value=1.2e+02 Score=25.90 Aligned_cols=46 Identities=33% Similarity=0.619 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEECCCCcchHHHHHHHH---HHcCCCc--eeEeC
Q 018869 138 MLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMF---RVFGHDR--VWVLD 190 (349)
Q Consensus 138 ~lp~~~~~~~~~~~~gi~~~~~VVvy~~~g~~~a~r~~~~L---~~~G~~~--V~~L~ 190 (349)
-+|+...+.+.... ...|.+|..++ +|+++||.- +..+|.| |+.++
T Consensus 85 G~Pde~Ri~kac~q-----~~~val~ay~~--ra~rvWw~q~~~k~a~~~NlsV~~l~ 135 (181)
T COG4681 85 GLPDERRIKKACTQ-----AAQVALFAYNS--RAARVWWQQVQSKVAQFANLSVWYLD 135 (181)
T ss_pred CCccHHHHHHHHhh-----hhheeeeeecc--hHHHHHHHHHHHHHHhhccceEEecC
Confidence 36777888887764 36788886555 799999974 4557776 44554
No 157
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=26.80 E-value=1.4e+02 Score=27.93 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCC---CCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCC
Q 018869 143 EAFAAAVSALGL---ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 191 (349)
Q Consensus 143 ~~~~~~~~~~gi---~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~G 191 (349)
.-|...+...+. -++++++|.+.+| .+.-++..|..+|.++|.+++=
T Consensus 108 ~G~~~~l~~~~~~~~~~~k~vlvlGaGG--aarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 108 DGIAGALANIGKFEPLAGFRGLVIGAGG--TSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred HHHHHHHHhhCCccccCCceEEEEcCcH--HHHHHHHHHHHcCCCeEEEEeC
Confidence 356666666552 2467788886543 3545567788999999999974
No 158
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=26.36 E-value=89 Score=25.48 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=26.6
Q ss_pred EEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHH
Q 018869 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196 (349)
Q Consensus 160 VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W 196 (349)
|+|.|.+..-++.-+..+|+.+.-.++.+...|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 4566654444777788888776655688999998777
No 159
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=26.30 E-value=1.5e+02 Score=25.26 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=25.2
Q ss_pred HHcCCCCCCcEEEECCCCc--chHHHHHHHHHHcCCCceeE
Q 018869 150 SALGLENKDGLVVYDGKGI--FSAARVWWMFRVFGHDRVWV 188 (349)
Q Consensus 150 ~~~gi~~~~~VVvy~~~g~--~~a~r~~~~L~~~G~~~V~~ 188 (349)
..++..+..+|+|.|+.|+ ..+-.++..|...|++ |.+
T Consensus 18 ~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 18 KLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp HHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred HHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 3333467788999987663 2466677889999995 776
No 160
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=25.71 E-value=87 Score=32.64 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCcEEEEC---CCCcchHHHHHHHHHHcCCCceeEe
Q 018869 137 HMLPSEEAFAAAVSALGLENKDGLVVYD---GKGIFSAARVWWMFRVFGHDRVWVL 189 (349)
Q Consensus 137 ~~lp~~~~~~~~~~~~gi~~~~~VVvy~---~~g~~~a~r~~~~L~~~G~~~V~~L 189 (349)
..+++.++..+.+.. .|.++.+|+||+ ..|...++.++..|+.+|.+++.++
T Consensus 50 ~~l~~m~~a~~ri~~-ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~ 104 (575)
T PRK11070 50 QQLSGIEKAVELLYN-ALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYL 104 (575)
T ss_pred HHhhCHHHHHHHHHH-HHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEE
Confidence 345555555554443 356778898884 4566566777888999999666544
No 161
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=25.56 E-value=48 Score=27.00 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=28.2
Q ss_pred EEEECCCCcchHHHHHHHHHHc----CCCceeEeCCCHHHH
Q 018869 160 LVVYDGKGIFSAARVWWMFRVF----GHDRVWVLDGGLPRW 196 (349)
Q Consensus 160 VVvy~~~g~~~a~r~~~~L~~~----G~~~V~~L~GG~~~W 196 (349)
|+|.|.+..-++.-+..+|+.+ +..++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 5667765555788888888887 667899999998777
No 162
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=25.53 E-value=2.7e+02 Score=22.25 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCCCCCcEEEECCCCc--chHHHHHHHHHHcCCCceeEe
Q 018869 142 EEAFAAAVSALGLENKDGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVL 189 (349)
Q Consensus 142 ~~~~~~~~~~~gi~~~~~VVvy~~~g~--~~a~r~~~~L~~~G~~~V~~L 189 (349)
.+++.+.+... +++..|++..+... ..-..+...++..|+++|.+.
T Consensus 71 ~~~L~~~l~~~--~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 71 LEELEAEIAQL--NKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred HHHHHHHHHhh--CCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 45667777665 45677888766543 235567788999999998764
No 163
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=25.52 E-value=94 Score=24.80 Aligned_cols=41 Identities=7% Similarity=0.147 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCCCCCcEEEECCCCcchHHH--HHHHHHHcCCC
Q 018869 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAAR--VWWMFRVFGHD 184 (349)
Q Consensus 143 ~~~~~~~~~~gi~~~~~VVvy~~~g~~~a~r--~~~~L~~~G~~ 184 (349)
+.+.+++... +..+.+|+|+|..|..+++. +++++...|++
T Consensus 60 ~~~~~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 60 DQAVEFIENA-ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHHHHHHHHH-HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhhhhh-hcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 3444555543 34668899999888655544 44556666763
No 164
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=25.33 E-value=2.6e+02 Score=29.03 Aligned_cols=27 Identities=33% Similarity=0.682 Sum_probs=21.2
Q ss_pred HHHHHHHHHH-cCCCceeEeC-CCHHHHHh
Q 018869 171 AARVWWMFRV-FGHDRVWVLD-GGLPRWRA 198 (349)
Q Consensus 171 a~r~~~~L~~-~G~~~V~~L~-GG~~~W~~ 198 (349)
++.++|+|+. -|| -|+++| ||..+|.-
T Consensus 165 ~~~vaw~l~~tk~~-giK~vnpgG~~a~~~ 193 (556)
T TIGR03121 165 AAYVAWLLKATKGY-GIKVVNPGGVEAWGW 193 (556)
T ss_pred HHHHHHHHHhccce-EEEEECCCchhhhcc
Confidence 6667799977 466 589887 99999964
No 165
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=24.77 E-value=1.7e+02 Score=26.02 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=28.9
Q ss_pred CCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 156 ~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
++.+|+|.+.+| -.+.++..|...|+.++.++|...-.+.
T Consensus 27 ~~~~V~ViG~Gg--lGs~ia~~La~~Gvg~i~lvD~D~ve~s 66 (212)
T PRK08644 27 KKAKVGIAGAGG--LGSNIAVALARSGVGNLKLVDFDVVEPS 66 (212)
T ss_pred hCCCEEEECcCH--HHHHHHHHHHHcCCCeEEEEeCCEeccc
Confidence 346788886644 3566777788899999999998754443
No 166
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=24.72 E-value=1.8e+02 Score=24.80 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=14.6
Q ss_pred CCCCcEEEECCCCcchHHH
Q 018869 155 ENKDGLVVYDGKGIFSAAR 173 (349)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~r 173 (349)
..+.+|+|.|..|..+++-
T Consensus 96 ~~g~~V~VHC~aGigRSgt 114 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPI 114 (166)
T ss_pred cCCCeEEEECCCCCCHHHH
Confidence 4578899999988666554
No 167
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=24.70 E-value=2.6e+02 Score=25.37 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=29.9
Q ss_pred CCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHH
Q 018869 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (349)
Q Consensus 157 ~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~ 197 (349)
+.+|+|.+.+| -.+.++..|...|+.++.++|...-...
T Consensus 24 ~~~VlvvG~Gg--lGs~va~~La~~Gvg~i~lvD~D~ve~s 62 (240)
T TIGR02355 24 ASRVLIVGLGG--LGCAASQYLAAAGVGNLTLLDFDTVSLS 62 (240)
T ss_pred CCcEEEECcCH--HHHHHHHHHHHcCCCEEEEEeCCccccc
Confidence 47788887655 4667788888999999999998765543
No 168
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=24.41 E-value=84 Score=27.84 Aligned_cols=50 Identities=20% Similarity=0.344 Sum_probs=41.3
Q ss_pred CccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCC
Q 018869 283 RSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGT 332 (349)
Q Consensus 283 ~~GHIPGA~~ip~~~l~~~~~~l~~~~el~~~~~~~~i~~~~~vivyC~~ 332 (349)
..|+.|-+..+|+.++-.++-++.+..+++++.++.|+.-.+.+.+--+.
T Consensus 123 ~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 123 LRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred hcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 47999999999999988887789999999999999998776666554443
No 169
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=24.26 E-value=1.5e+02 Score=24.12 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=29.6
Q ss_pred CCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHH
Q 018869 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196 (349)
Q Consensus 156 ~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W 196 (349)
++++++|.+. |+ .+..+...|...|.++|.+++-.....
T Consensus 11 ~~~~vlviGa-Gg-~ar~v~~~L~~~g~~~i~i~nRt~~ra 49 (135)
T PF01488_consen 11 KGKRVLVIGA-GG-AARAVAAALAALGAKEITIVNRTPERA 49 (135)
T ss_dssp TTSEEEEESS-SH-HHHHHHHHHHHTTSSEEEEEESSHHHH
T ss_pred CCCEEEEECC-HH-HHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 5688999965 44 466677788889999999999776544
No 170
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=24.19 E-value=2.3e+02 Score=26.93 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=54.5
Q ss_pred HHHHHhcCCCCcEEEEeccCCCCCCCCChhhhhcCCCCCceecCcccccccCCC----CCCCCCCHHHHHHHHHHcCCCC
Q 018869 81 DWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTN----LPHMLPSEEAFAAAVSALGLEN 156 (349)
Q Consensus 81 ~~L~~~l~~~~~~iIDvR~~~~~~~~~~~~~y~~GHIPGAi~ip~~~l~~~~~~----~~~~lp~~~~~~~~~~~~gi~~ 156 (349)
++.++++..=+.+|+|+- .--..-..-|||+.-. ++.+...... .-....+.++..+.+..+|+.+
T Consensus 13 ~~~~e~l~~~DtfifDcD---------GVlW~g~~~ipGs~e~-l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~ 82 (306)
T KOG2882|consen 13 EEARELLDSFDTFIFDCD---------GVLWLGEKPIPGSPEA-LNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS 82 (306)
T ss_pred HHHHHHHhhcCEEEEcCC---------cceeecCCCCCChHHH-HHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc
Confidence 566777777789999995 2222234457776532 1111000000 0012234556667777777763
Q ss_pred CCcEEEECCCCc-chHHHHHHHHHHcC-C-CceeEeCC-CH-HHHHhCCCCcccC
Q 018869 157 KDGLVVYDGKGI-FSAARVWWMFRVFG-H-DRVWVLDG-GL-PRWRASGYDVESS 206 (349)
Q Consensus 157 ~~~VVvy~~~g~-~~a~r~~~~L~~~G-~-~~V~~L~G-G~-~~W~~~G~pv~~~ 206 (349)
...... ..|..++..|+... . ++|+++-+ |+ ....+.|+.....
T Consensus 83 ------v~e~~i~ssa~~~a~ylk~~~~~~k~Vyvig~~gi~~eL~~aG~~~~g~ 131 (306)
T KOG2882|consen 83 ------VKEENIFSSAYAIADYLKKRKPFGKKVYVIGEEGIREELDEAGFEYFGG 131 (306)
T ss_pred ------cCcccccChHHHHHHHHHHhCcCCCeEEEecchhhhHHHHHcCceeecC
Confidence 111122 23455666676655 2 46877742 33 3345566544433
No 171
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=24.00 E-value=88 Score=25.36 Aligned_cols=49 Identities=18% Similarity=0.083 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCCCCCcE-EEECCCCcchHHHHHHHHHHc-CCCceeEeCC
Q 018869 143 EAFAAAVSALGLENKDGL-VVYDGKGIFSAARVWWMFRVF-GHDRVWVLDG 191 (349)
Q Consensus 143 ~~~~~~~~~~gi~~~~~V-Vvy~~~g~~~a~r~~~~L~~~-G~~~V~~L~G 191 (349)
+-+.+++...++++++-+ |++.......|..=+..++.+ |+++|-+|+-
T Consensus 24 eLl~~ii~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~~Gw~~Vplmc~ 74 (117)
T TIGR01796 24 ELLTELMERNELTPEDLISVIFTVTEDLHADFPAAAARGLPGWTDVPVMCA 74 (117)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEecCcccccChHHHHHhccCCCCcceecc
Confidence 567788899999877654 234332223454444556777 9999999873
No 172
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=23.82 E-value=82 Score=27.26 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=16.3
Q ss_pred CCCCcEEEECCCCcchHHH-HHHHHHHcC
Q 018869 155 ENKDGLVVYDGKGIFSAAR-VWWMFRVFG 182 (349)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~r-~~~~L~~~G 182 (349)
.++++|+++|.+|..|+.- ++-+|..+|
T Consensus 131 ~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 131 ENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 4678999999888666655 445556665
No 173
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=23.79 E-value=32 Score=34.40 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=27.1
Q ss_pred CceEEeccCCCcccccCCCCCCCCCccccCCCcccCcccccCC
Q 018869 259 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA 301 (349)
Q Consensus 259 ~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~~~ 301 (349)
.+.|||.|+.++| .+||+-.|.|+.-.-++++
T Consensus 326 rFFiVDcRpaeqy-----------naGHlstaFhlDc~lmlqe 357 (669)
T KOG3636|consen 326 RFFIVDCRPAEQY-----------NAGHLSTAFHLDCVLMLQE 357 (669)
T ss_pred EEEEEeccchhhc-----------ccccchhhhcccHHHHhcC
Confidence 4679999999999 6899999999887766654
No 174
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=23.57 E-value=1.4e+02 Score=21.76 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.3
Q ss_pred CCCCcEEEECCCCcchHHHHHHHHHHcCCC
Q 018869 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHD 184 (349)
Q Consensus 155 ~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~ 184 (349)
..+..|++|...+...-.++...|...|++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 456779999888877777888889999986
No 175
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=23.57 E-value=1.5e+02 Score=28.50 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCCCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 309 ~el~~~~~~~~i~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
..+.+.|.+.|+.++..|+++|........+.+++-..|.
T Consensus 32 ~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~ 71 (417)
T PF00501_consen 32 RKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGA 71 (417)
T ss_dssp HHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-
T ss_pred HHHhhHHHHhCCCccccccccCCccceeeeeecccccccc
Confidence 4566667777999999999999999999999998888774
No 176
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=23.29 E-value=46 Score=31.06 Aligned_cols=39 Identities=26% Similarity=0.518 Sum_probs=29.7
Q ss_pred cCHHHHHHHhhcCCceEEeccCCCcccccCCCCCCCCCccccCCCcccCccccc
Q 018869 246 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQML 299 (349)
Q Consensus 246 i~~~~v~~~~~~~~~~lID~R~~~ey~G~~~~~~~~~~~GHIPGA~~ip~~~l~ 299 (349)
++.+|+...+..++.+++|.|+. ..||.+|+|+-...++
T Consensus 6 ~s~~wlnr~l~~~nllllDCRse---------------s~~i~~A~~valPalm 44 (343)
T KOG1717|consen 6 KSVAWLNRQLELGNLLLLDCRSE---------------SSHIESAINVALPALM 44 (343)
T ss_pred HHHHHHHhhcccCceEEEecCCc---------------cchhhhhhhhcchHHH
Confidence 56788888888888999999982 3678888887665443
No 177
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=23.14 E-value=1.5e+02 Score=22.79 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=26.8
Q ss_pred CCCcEEEECCCCcchHHHHHHHHHHcCCC-ceeEeC
Q 018869 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHD-RVWVLD 190 (349)
Q Consensus 156 ~~~~VVvy~~~g~~~a~r~~~~L~~~G~~-~V~~L~ 190 (349)
++.+|++|...++..-.++..+|..+|++ .+..++
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid 41 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEID 41 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcC
Confidence 34779999888887788888899999985 344444
No 178
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.13 E-value=4e+02 Score=21.82 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHcCCCCCCcEEEECCCCc---chHHHHHHHHHHcCCCceeEeCCC
Q 018869 140 PSEEAFAAAVSALGLENKDGLVVYDGKGI---FSAARVWWMFRVFGHDRVWVLDGG 192 (349)
Q Consensus 140 p~~~~~~~~~~~~gi~~~~~VVvy~~~g~---~~a~r~~~~L~~~G~~~V~~L~GG 192 (349)
-++++|.+...+ .+..+|+.|.... .....+...|+..|.+++.++-||
T Consensus 40 ~s~e~~v~aa~e----~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 40 QTPEEIARQAVE----ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred CCHHHHHHHHHH----cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 345566655554 3456777765321 234556777888888778888887
No 179
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=22.62 E-value=90 Score=29.85 Aligned_cols=40 Identities=33% Similarity=0.555 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHcCCCCC--CCEEEE--cCChHHHHHHHHHHHhC
Q 018869 307 PADELKKRFEQEGISLE--KPVVTA--CGTGVTACILALVLFPV 346 (349)
Q Consensus 307 ~~~el~~~~~~~~i~~~--~~vivy--C~~G~rA~~~~~~L~~~ 346 (349)
..+.|++.|.+.||..| .|++|| |+-|.--.-++|.|+.+
T Consensus 251 Aa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~ 294 (443)
T COG3048 251 AAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLA 294 (443)
T ss_pred HHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhh
Confidence 45789999999987554 677776 77766666677777653
No 180
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.43 E-value=2.7e+02 Score=23.44 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCcEEEECCC-Cc--chHHHHHHHHHHcCCCceeEeCCCH
Q 018869 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGK-GI--FSAARVWWMFRVFGHDRVWVLDGGL 193 (349)
Q Consensus 137 ~~lp~~~~~~~~~~~~gi~~~~~VVvy~~~-g~--~~a~r~~~~L~~~G~~~V~~L~GG~ 193 (349)
..+.+++++.... +..+-.+|..|.- +. .....+...|+..|.+++.++-||.
T Consensus 47 g~~~tp~e~v~aA----~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 47 GLFQTPEEAVRAA----VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred CCcCCHHHHHHHH----HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 3455666655544 3456667777642 22 2466788899999999999888884
No 181
>PRK12361 hypothetical protein; Provisional
Probab=22.41 E-value=2.8e+02 Score=28.49 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHHHHHHHH--cCCCCCCCEEEEcCChH
Q 018869 308 ADELKKRFEQ--EGISLEKPVVTACGTGV 334 (349)
Q Consensus 308 ~~el~~~~~~--~~i~~~~~vivyC~~G~ 334 (349)
.++|.+..+- ..+..+++|+|+|..|.
T Consensus 158 ~~~l~~a~~~i~~~~~~~~~VlVHC~~G~ 186 (547)
T PRK12361 158 LAQLNQAINWIHRQVRANKSVVVHCALGR 186 (547)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 4555554442 12345689999999884
No 182
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=22.36 E-value=1.8e+02 Score=26.18 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=29.5
Q ss_pred HHHHHHHcCC-CCCCcEEEECCCCcchHHHHHHHHHHcCCC--ceeEeCC
Q 018869 145 FAAAVSALGL-ENKDGLVVYDGKGIFSAARVWWMFRVFGHD--RVWVLDG 191 (349)
Q Consensus 145 ~~~~~~~~gi-~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~--~V~~L~G 191 (349)
|...++..|. -++.+++|++. |+ .+.-+++.|...|.+ +++++|-
T Consensus 12 ~~~al~~~g~~l~~~rvlvlGA-Gg-Ag~aiA~~L~~~G~~~~~i~ivdr 59 (226)
T cd05311 12 LLNALKLVGKKIEEVKIVINGA-GA-AGIAIARLLLAAGAKPENIVVVDS 59 (226)
T ss_pred HHHHHHHhCCCccCCEEEEECc-hH-HHHHHHHHHHHcCcCcceEEEEeC
Confidence 3444444443 24577888865 43 355567778889998 9998884
No 183
>PRK05852 acyl-CoA synthetase; Validated
Probab=22.25 E-value=1.6e+02 Score=29.66 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 309 ~el~~~~~~~~i~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
..+-..|.+.|+.+++.|.++|..+.....+++++-..|.
T Consensus 54 ~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 93 (534)
T PRK05852 54 DDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADL 93 (534)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCc
Confidence 4455667778999999999999999999999999888774
No 184
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=21.66 E-value=1.4e+02 Score=21.32 Aligned_cols=48 Identities=27% Similarity=0.357 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCcEEEECC-CCcchHHHHHHHHHHcCCCceeEeCCC
Q 018869 139 LPSEEAFAAAVSALGLENKDGLVVYDG-KGIFSAARVWWMFRVFGHDRVWVLDGG 192 (349)
Q Consensus 139 lp~~~~~~~~~~~~gi~~~~~VVvy~~-~g~~~a~r~~~~L~~~G~~~V~~L~GG 192 (349)
-|++..+...+..+++++.+.++|=|. .....+ -+.+|+.-|.+..|-
T Consensus 4 KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~------a~~~G~~~ilV~tG~ 52 (75)
T PF13242_consen 4 KPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEA------AKAAGIDTILVLTGV 52 (75)
T ss_dssp TTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHH------HHHTTSEEEEESSSS
T ss_pred CCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHH------HHHcCCcEEEECCCC
Confidence 377889999999999987775555544 222222 357899878787763
No 185
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=21.44 E-value=93 Score=25.21 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=31.6
Q ss_pred CCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCCC
Q 018869 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGY 201 (349)
Q Consensus 157 ~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G~ 201 (349)
+.+|++.+.++ -.+.++..|...|+.++.++|+..-.+..-+.
T Consensus 2 ~~~v~iiG~G~--vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r 44 (135)
T PF00899_consen 2 NKRVLIIGAGG--VGSEVAKNLARSGVGKITLVDDDIVEPSNLNR 44 (135)
T ss_dssp T-EEEEESTSH--HHHHHHHHHHHHTTSEEEEEESSBB-GGGCCT
T ss_pred CCEEEEECcCH--HHHHHHHHHHHhCCCceeecCCcceeeccccc
Confidence 46778886544 47788888999999999999998776655444
No 186
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=20.83 E-value=2.2e+02 Score=26.60 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCC-CCCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCC
Q 018869 143 EAFAAAVSALGL-ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGG 192 (349)
Q Consensus 143 ~~~~~~~~~~gi-~~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG 192 (349)
.-|...+...+. ...++|+|.+.+| .+.-+++.|...|..+|.++|-.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGG--aaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGG--AGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcH--HHHHHHHHHHHcCCCEEEEECCC
Confidence 345566654322 2446788886544 45557788889999999999853
No 187
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=20.77 E-value=2.1e+02 Score=23.84 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHc-CCCCCCcEEEECCCCcchHHH
Q 018869 137 HMLPSEEAFAAAVSAL-GLENKDGLVVYDGKGIFSAAR 173 (349)
Q Consensus 137 ~~lp~~~~~~~~~~~~-gi~~~~~VVvy~~~g~~~a~r 173 (349)
+..|.++.|.+++... ..+++..++|.|..|..+.+.
T Consensus 103 ~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt 140 (149)
T PF14566_consen 103 HQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTT 140 (149)
T ss_dssp TS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 4667787777776664 335677888889877655444
No 188
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=20.64 E-value=2.8e+02 Score=24.73 Aligned_cols=52 Identities=15% Similarity=0.037 Sum_probs=33.0
Q ss_pred CCCCcEEEECC--CCcchHHHHHHHHHHcCCCc--e-eEeC---CCHHHHHhCCCCcccC
Q 018869 155 ENKDGLVVYDG--KGIFSAARVWWMFRVFGHDR--V-WVLD---GGLPRWRASGYDVESS 206 (349)
Q Consensus 155 ~~~~~VVvy~~--~g~~~a~r~~~~L~~~G~~~--V-~~L~---GG~~~W~~~G~pv~~~ 206 (349)
.++++|++.|+ ..+.....+...|+..|.+- + .++| ||.......|.|+.+-
T Consensus 116 ~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~sl 175 (206)
T PRK13809 116 TPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLSSV 175 (206)
T ss_pred CCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEEEE
Confidence 46688999986 22336777888999999852 2 2556 4444444456666553
No 189
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
Probab=20.54 E-value=1.4e+02 Score=26.83 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHcCCCCCCCEEEEcCChHHHH
Q 018869 305 LLPADELKKRFEQEGISLEKPVVTACGTGVTAC 337 (349)
Q Consensus 305 l~~~~el~~~~~~~~i~~~~~vivyC~~G~rA~ 337 (349)
..+++..+++|+-++.+.++|++++|.+-....
T Consensus 43 ~~~~~Av~~i~~~K~Rp~~kpLil~~~~~~~l~ 75 (211)
T COG0009 43 ATNEEAVERLYEIKQRPSDKPLILHVASLEQLK 75 (211)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHH
Confidence 446778889999889999999999999865443
No 190
>PRK08223 hypothetical protein; Validated
Probab=20.11 E-value=3.9e+02 Score=25.20 Aligned_cols=43 Identities=9% Similarity=0.038 Sum_probs=31.7
Q ss_pred CCCcEEEECCCCcchHHHHHHHHHHcCCCceeEeCCCHHHHHhCC
Q 018869 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (349)
Q Consensus 156 ~~~~VVvy~~~g~~~a~r~~~~L~~~G~~~V~~L~GG~~~W~~~G 200 (349)
++.+|+|.+++| -.+.++..|...|+.++.++|...-....-+
T Consensus 26 ~~s~VlIvG~GG--LGs~va~~LA~aGVG~i~lvD~D~Ve~SNLn 68 (287)
T PRK08223 26 RNSRVAIAGLGG--VGGIHLLTLARLGIGKFTIADFDVFELRNFN 68 (287)
T ss_pred hcCCEEEECCCH--HHHHHHHHHHHhCCCeEEEEeCCCcchhccc
Confidence 357788887755 3566777899999999999998765554433
No 191
>PRK07514 malonyl-CoA synthase; Validated
Probab=20.04 E-value=1.9e+02 Score=28.56 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCCCCCEEEEcCChHHHHHHHHHHHhCcC
Q 018869 309 DELKKRFEQEGISLEKPVVTACGTGVTACILALVLFPVFF 348 (349)
Q Consensus 309 ~el~~~~~~~~i~~~~~vivyC~~G~rA~~~~~~L~~~g~ 348 (349)
..+...|.+.|+.+++.|.++|..+....++++++...|.
T Consensus 39 ~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~ 78 (504)
T PRK07514 39 ARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGA 78 (504)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 4455567778999999999999999999999999888875
Done!