BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018870
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 125 KGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHL 184
K ++ FGVP+ V + KP+P + +C +Y+ +GL+++ +++ G+K ++ L
Sbjct: 46 KATWESNYFGVPLTTVVTPE---KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESL 102
Query: 185 VSMYNQDPNASLPE---GVNPFDVAALAKYYLASLPEPLTTFELY------DEIKGARSS 235
++QD N L E VN VA K + + LP+PL + + +I
Sbjct: 103 QRQFDQDHNLDLAEKDFTVN--TVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQK 160
Query: 236 IHAMRNTLKKL 246
+HA++ LKK
Sbjct: 161 LHALKEVLKKF 171
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 132 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 191
VFGVP+ V VQR G+P+P + + YL L+ LF+ G K IQ L M
Sbjct: 20 VFGVPLTVNVQRT--GQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGA 77
Query: 192 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFEL 225
+ EG + +DVA + K Y LPEPL T +L
Sbjct: 78 IDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKL 111
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 189
++ FG+P++ V + KP+P + KC +++ +GL ++ L++ G+K ++ ++
Sbjct: 20 SNYFGMPLQDLVTAE---KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFD 76
Query: 190 QDPN---ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMR 240
QD N S+ VN VA K + A LP+PL + L+ E+ A +HA++
Sbjct: 77 QDHNINLVSMEVTVNA--VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK 134
Query: 241 NTLKKL 246
+KK
Sbjct: 135 EIVKKF 140
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 189
++ FG+P++ V + KP+P + KC +++ +GL ++ L++ G+K ++ ++
Sbjct: 10 SNYFGMPLQDLVTAE---KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFD 66
Query: 190 QDPN---ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMR 240
QD N S+ VN VA K + A LP+PL + L+ E+ A +HA++
Sbjct: 67 QDHNINLVSMEVTVNA--VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK 124
Query: 241 NTLKKL 246
+KK
Sbjct: 125 EIVKKF 130
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 192
FGV ++ ++ +P+P +L + YL L ++ +F+ + +V++ + YN
Sbjct: 9 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN--- 65
Query: 193 NASLPEGVNPFDV----AALAKYYLASLPEPLTTFELYDEIKG 231
LP + ++ A + K +L LPEPL TF+LY + G
Sbjct: 66 -MGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVG 107
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 192
FGV ++ ++ +P+P +L + YL L ++ +F+ + +V++ + YN
Sbjct: 45 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN--- 101
Query: 193 NASLPEGVNPFD----VAALAKYYLASLPEPLTTFELYDEIKG 231
LP + ++ A + K +L LPEPL TF+LY + G
Sbjct: 102 -MGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVG 143
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 192
FGV ++ ++ +P+P +L + YL L ++ +F+ + +V++ + YN
Sbjct: 10 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN--- 66
Query: 193 NASLPEGVNPFD----VAALAKYYLASLPEPLTTFELYDEIKG 231
LP + ++ A + K +L LPEPL TF+LY + G
Sbjct: 67 -MGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVG 108
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 192
FGV ++ ++ +P+P +L + YL L ++ +F+ + +V++ + YN
Sbjct: 6 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN--- 62
Query: 193 NASLPEGVNPFD----VAALAKYYLASLPEPLTTFELYDEIKG 231
LP + ++ A + K +L LPEPL TF+LY + G
Sbjct: 63 -MGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVG 104
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP 192
FGV ++ ++ +P+P +L + YL L ++ +F + +V++ + YN
Sbjct: 37 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYN--- 93
Query: 193 NASLPEGVNPFD----VAALAKYYLASLPEPLTTFELYDEIKG 231
LP + ++ A + K +L LPEPL TF+LY + G
Sbjct: 94 -MGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVG 135
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 124 QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQH 183
+KG+ +FG + +R+ VP + +C + + GL+ +++ G+ IQ
Sbjct: 11 EKGLIKDQIFGSHLHKVCERE--NSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQK 68
Query: 184 LVSMYNQDPNASLPEGV--NPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSS 235
L + NQ+ +L + + V K + LPEPL + +++ A +
Sbjct: 69 LRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTR 128
Query: 236 IHAMRNTLKKL 246
I A+++ ++KL
Sbjct: 129 IEAVKSLVQKL 139
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 150 VPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFD-VAAL 208
+P I+V C + + GL L++ G + ++ L + + L V+ + +L
Sbjct: 17 IPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSL 76
Query: 209 AKYYLASLPEPLTTFELYD------EIKGARSSIHAMRNTLKKLSNMDARSLAMEM 258
K +L +L EPL TF L EI +SI AM + +L + +LA M
Sbjct: 77 LKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLM 132
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 147 GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL---PEGVNPF 203
G VP +L C ++ G+ +++ G IQ L ++ + L P +
Sbjct: 34 GFEVPQVLQSCTAFIERYGIVDG-IYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIH 92
Query: 204 DVAALAKYYLASLPEPLTTFELYDEIKGARSS 235
V +L K Y LP PL T++LY++ A S+
Sbjct: 93 SVGSLCKLYFRELPNPLLTYQLYEKFSDAVSA 124
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 41/192 (21%)
Query: 112 KSKTILTDIERWQKGVASTDV----FGVPIEVTVQRQ--QYGKPVPHILVKCADYLVLSG 165
K K + +R + A+T++ FGVP +YG +P LV L
Sbjct: 40 KVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVPEYGH-IPSFLVDACTSLE-DH 97
Query: 166 LNSQFLFKAEGDKKVIQHLVSMYNQ-DPNASLPEGVNPFDVAALAKYYLASLPEPLTTFE 224
++++ LF+ G + L ++ N+ D P D+A L K + LPEP+ +
Sbjct: 98 IHTEGLFRKSGS---VIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFFRELPEPILPAD 154
Query: 225 LYDEIKGARS--------------------SIHAMR---NTLKKLS------NMDARSLA 255
L++ + A+ ++H +R N L+ +S MD+ +LA
Sbjct: 155 LHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLA 214
Query: 256 MEMAPVIMWQKE 267
+ AP ++ E
Sbjct: 215 VIFAPNLLQTSE 226
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 35/206 (16%)
Query: 153 ILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL---PEGVNPFDVAALA 209
I+ KC + G+N Q L++ G +Q L+S+ DP + E +++ +
Sbjct: 40 IIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSIL-MDPKTATETETEICAEWEIKTIT 98
Query: 210 ---KYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNMDARSLAMEMAPVIMWQK 266
K YL LP PL ++ RS I A KL N ++R E+ ++
Sbjct: 99 SALKTYLRMLPGPLMMYQF------QRSFIKA-----AKLENQESR--VSEIHSLVHRLP 145
Query: 267 ERKPEFYRQYWNHASR---SSSKNMEPATPHGEW---DMLADESEEMDASSAIPLDDGMP 320
E+ + NH ++ + +N+ G +L + E + A M
Sbjct: 146 EKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAI--------MD 197
Query: 321 IDFGAIEVVQCLMEQHNAIFTDANET 346
I F I V++ L+E H IF ET
Sbjct: 198 IKFQNI-VIEILIENHEKIFNTVPET 222
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-----NASLPEGVNPFDV 205
P ++ C + GLNS+ L++ G +I+ + +++D + ++ E +N +
Sbjct: 286 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINI--I 343
Query: 206 AALAKYYLASLPEPLTTFELY 226
K Y LP PL T++ Y
Sbjct: 344 TGALKLYFRDLPIPLITYDAY 364
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 158 ADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGV--NPFDVAALAKYYLAS 215
D+L + + LF+ G ++ +Q ++ + S+PE + + VA +L +
Sbjct: 207 VDHLFKYACHQEDLFQTPGMQEELQQIIDCLD----TSIPETIPGSNHSVAEALLIFLEA 262
Query: 216 LPEPLTTFELYDEIKGARSSIHAMRNTLKKL 246
LPEP+ +ELY + R + +L
Sbjct: 263 LPEPVICYELYQRCLDSAYDPRICRQVISQL 293
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-----NASLPEGVNPFDV 205
P ++ C + GLNS+ L++ G +I+ + +++D + ++ E +N +
Sbjct: 25 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINI--I 82
Query: 206 AALAKYYLASLPEPLTTFELY 226
K Y LP PL T++ Y
Sbjct: 83 TGALKLYFRDLPIPLITYDAY 103
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 158 ADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGV--NPFDVAALAKYYLAS 215
D+L + + LF+ G ++ +Q ++ + S+PE + + VA +L +
Sbjct: 183 VDHLFKYACHQEDLFQTPGMQEELQQIIDCLD----TSIPETIPGSNHSVAEALLIFLEA 238
Query: 216 LPEPLTTFELYDEIKGARSSIHAMRNTLKKL 246
LPEP+ +ELY + R + +L
Sbjct: 239 LPEPVICYELYQRCLDSAYDPRICRQVISQL 269
>pdb|2KXI|A Chain A, Solution Nmr Structure Of The Apoform Of Nare (Nmb1343)
Length = 153
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 18/96 (18%)
Query: 39 KGNAADVAERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVG 98
KGN A+VA R K PS K+AV I G ++ S T DK
Sbjct: 24 KGNKAEVAIRYDGKFKYDGKATHGPSVKNAVYAHQIETGLYDGCYI----STTTDK---- 75
Query: 99 KIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFG 134
E AKK A S IE V + D+FG
Sbjct: 76 -----EIAKKFATSS-----GIENGYIYVLNRDLFG 101
>pdb|1M1L|A Chain A, Human Suppressor Of Fused (N-Terminal Domain)
pdb|1M1L|B Chain B, Human Suppressor Of Fused (N-Terminal Domain)
pdb|1M1L|C Chain C, Human Suppressor Of Fused (N-Terminal Domain)
pdb|1M1L|D Chain D, Human Suppressor Of Fused (N-Terminal Domain)
Length = 236
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 197 PEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSI 236
P+ NP V A+ KY+L P+PL +Y + ++I
Sbjct: 20 PDQPNPLQVTAIVKYWLGG-PDPLDYVSMYRNVGSPSANI 58
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 16/106 (15%)
Query: 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD-PNASLPEGVNPFDVAALA 209
P ++ C + GL S+ L++ G + I+ + +++D A + V P D+ +
Sbjct: 289 PMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYP-DINIIT 347
Query: 210 ---KYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNMDAR 252
K Y LP P+ T++ Y + A K+SN D R
Sbjct: 348 GALKLYFRDLPIPVITYDTYSKFIDA-----------AKISNADER 382
>pdb|1RI6|A Chain A, Structure Of A Putative Isomerase From E. Coli
Length = 343
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 311 SAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVW 348
S L+DG+P+ G ++VV+ L H+A + N T+W
Sbjct: 109 SVTRLEDGLPV--GVVDVVEGLDGCHSANISPDNRTLW 144
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 144 QQYGKP--VPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVN 201
+Q+ P P +L+K + + GL L++ + + + + P+ L E ++
Sbjct: 17 EQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNLAELRQLLDCDTPSVDL-EMID 75
Query: 202 PFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNMDARSLAMEMAPV 261
+A K YL LP P+ +Y E+ + + ++ L + RS P
Sbjct: 76 VHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKL-IRS------PS 128
Query: 262 IMWQKERKPEFYRQYWNHASRSSSKNM 288
I Q ++ +++ S++SSKN+
Sbjct: 129 IPHQYWLTLQYLLKHFFKLSQTSSKNL 155
>pdb|2XS6|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Pik3r2
Length = 214
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 144 QQYGKP--VPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVN 201
+Q+ P P +LVK + + +GL+S+ ++ E +S +Q A+L +G+
Sbjct: 32 EQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPAPRTDWSLSDVDQWDTAALADGI- 90
Query: 202 PFDVAALAKYYLASLPEPLTTFELYDEIKGA 232
K +L +LP PL T E E + A
Sbjct: 91 --------KSFLLALPAPLVTPEASAEARRA 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,878,932
Number of Sequences: 62578
Number of extensions: 385618
Number of successful extensions: 797
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 30
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)