Query 018870
Match_columns 349
No_of_seqs 329 out of 1528
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 7.3E-38 1.6E-42 288.6 17.2 188 130-345 2-219 (220)
2 cd04390 RhoGAP_ARHGAP22_24_25 100.0 8E-37 1.7E-41 277.6 16.3 141 131-271 1-175 (199)
3 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 9E-37 2E-41 280.1 16.3 167 133-345 1-212 (213)
4 cd04372 RhoGAP_chimaerin RhoGA 100.0 8.4E-37 1.8E-41 276.5 15.3 135 133-269 1-168 (194)
5 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 3E-36 6.6E-41 277.2 15.4 175 132-345 1-210 (216)
6 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 2.8E-35 6E-40 268.3 17.6 169 130-343 2-202 (203)
7 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 3E-35 6.6E-40 263.8 15.8 131 133-264 1-163 (182)
8 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 9.3E-35 2E-39 264.4 17.0 135 133-269 1-177 (200)
9 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 5.2E-35 1.1E-39 263.3 15.0 136 133-270 1-168 (187)
10 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 1.3E-34 2.9E-39 261.7 16.8 161 132-343 1-191 (192)
11 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 1.8E-34 4E-39 263.6 16.7 138 133-270 1-174 (207)
12 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 1.9E-34 4.2E-39 264.3 16.2 136 133-270 1-188 (211)
13 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 1.6E-34 3.4E-39 261.7 15.2 140 129-268 2-170 (195)
14 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 2.3E-34 5E-39 262.3 16.3 135 133-269 1-179 (203)
15 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 3.2E-34 7E-39 261.2 16.9 168 132-344 1-199 (202)
16 cd04407 RhoGAP_myosin_IXB RhoG 100.0 3.2E-34 7E-39 258.0 15.9 133 133-268 1-163 (186)
17 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 2.9E-34 6.2E-39 258.8 14.7 136 131-268 1-168 (188)
18 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 2.3E-34 5E-39 260.8 14.2 136 131-269 1-169 (195)
19 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 1.1E-33 2.3E-38 256.5 17.0 138 132-270 1-171 (196)
20 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 7.2E-34 1.6E-38 259.6 15.4 160 147-345 6-205 (206)
21 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 1.3E-33 2.8E-38 254.9 16.3 134 133-268 1-169 (192)
22 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 1E-33 2.3E-38 261.8 16.0 136 132-268 1-200 (225)
23 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 1.6E-33 3.5E-38 253.6 15.7 138 133-271 1-168 (187)
24 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 1.7E-33 3.8E-38 258.1 15.7 161 133-342 1-210 (212)
25 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 2.5E-33 5.4E-38 252.9 16.1 134 132-265 1-172 (190)
26 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 3.2E-33 7E-38 251.3 15.2 135 133-270 1-166 (185)
27 cd04406 RhoGAP_myosin_IXA RhoG 100.0 4.3E-33 9.4E-38 250.7 15.5 133 133-268 1-163 (186)
28 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 4.8E-33 1E-37 250.9 15.0 138 131-268 1-169 (189)
29 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 5.3E-33 1.1E-37 254.2 14.8 158 133-345 1-201 (208)
30 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 5.4E-33 1.2E-37 252.0 14.3 136 133-270 1-168 (196)
31 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 8.8E-32 1.9E-36 243.5 15.7 125 146-270 13-166 (193)
32 cd04377 RhoGAP_myosin_IX RhoGA 100.0 8.6E-32 1.9E-36 242.2 15.1 133 133-268 1-163 (186)
33 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 2.6E-31 5.7E-36 240.8 14.8 129 138-268 3-165 (200)
34 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 4.8E-31 1E-35 237.0 16.0 132 134-268 2-165 (184)
35 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 1.6E-29 3.5E-34 230.3 13.5 121 149-269 27-183 (203)
36 KOG2200 Tumour suppressor prot 100.0 6.3E-29 1.4E-33 248.0 11.5 188 128-345 296-515 (674)
37 cd04380 RhoGAP_OCRL1 RhoGAP_OC 99.9 1.7E-27 3.7E-32 219.7 12.1 140 129-270 9-198 (220)
38 KOG4407 Predicted Rho GTPase-a 99.9 1.4E-27 3.1E-32 251.9 11.6 167 131-343 1156-1357(1973)
39 smart00324 RhoGAP GTPase-activ 99.9 3.1E-26 6.8E-31 202.7 15.2 122 149-270 2-154 (174)
40 KOG1453 Chimaerin and related 99.9 3.2E-27 6.9E-32 255.5 9.2 188 78-269 545-773 (918)
41 KOG4269 Rac GTPase-activating 99.9 6.7E-27 1.5E-31 241.3 8.7 139 128-268 895-1071(1112)
42 KOG1450 Predicted Rho GTPase-a 99.9 8.5E-26 1.8E-30 230.8 13.5 138 129-268 453-622 (650)
43 KOG1451 Oligophrenin-1 and rel 99.9 3.7E-26 7.9E-31 227.7 8.9 149 152-346 390-573 (812)
44 cd00159 RhoGAP RhoGAP: GTPase- 99.9 1E-24 2.2E-29 190.8 14.8 119 151-269 1-149 (169)
45 PF00620 RhoGAP: RhoGAP domain 99.9 1.3E-24 2.9E-29 187.5 10.1 118 151-268 1-149 (151)
46 KOG3564 GTPase-activating prot 99.9 1.3E-24 2.7E-29 212.8 10.7 188 80-270 286-511 (604)
47 KOG4270 GTPase-activator prote 99.9 2.2E-24 4.8E-29 219.6 12.6 138 129-267 143-313 (577)
48 KOG2710 Rho GTPase-activating 99.9 8.3E-24 1.8E-28 208.0 13.5 120 147-266 91-255 (412)
49 KOG4406 CDC42 Rho GTPase-activ 99.9 2.6E-24 5.6E-29 208.4 8.2 141 129-269 250-421 (467)
50 KOG1117 Rho- and Arf-GTPase ac 99.9 3.6E-23 7.8E-28 213.1 10.3 149 146-347 723-903 (1186)
51 KOG1452 Predicted Rho GTPase-a 99.7 1.8E-16 3.9E-21 149.3 10.6 138 129-268 181-354 (442)
52 KOG4724 Predicted Rho GTPase-a 99.6 1.8E-15 4E-20 153.6 6.5 137 128-269 78-243 (741)
53 KOG4271 Rho-GTPase activating 99.6 9.9E-16 2.1E-20 160.0 4.0 131 130-263 915-1076(1100)
54 cd04405 RhoGAP_BRCC3-like RhoG 99.4 1.4E-12 2.9E-17 119.9 11.0 161 131-345 20-233 (235)
55 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.3 1.3E-11 2.7E-16 112.0 9.9 119 150-268 6-167 (198)
56 KOG3565 Cdc42-interacting prot 98.9 1.8E-09 3.8E-14 113.1 5.1 121 146-267 214-367 (640)
57 KOG4370 Ral-GTPase effector RL 98.7 3.5E-08 7.6E-13 96.8 6.3 140 126-265 45-256 (514)
58 KOG4724 Predicted Rho GTPase-a 97.5 0.00014 3E-09 75.4 6.3 135 129-266 413-589 (741)
59 PF08101 DUF1708: Domain of un 97.0 0.003 6.5E-08 63.7 9.4 120 150-269 8-170 (420)
60 KOG1453 Chimaerin and related 94.0 0.022 4.7E-07 63.2 1.2 100 132-231 462-570 (918)
61 KOG1449 Predicted Rho GTPase-a 66.3 1.6 3.5E-05 45.5 -0.5 21 249-269 16-36 (670)
62 KOG4271 Rho-GTPase activating 49.6 21 0.00045 39.6 4.3 96 129-227 353-458 (1100)
63 KOG1449 Predicted Rho GTPase-a 48.0 1.7 3.7E-05 45.3 -3.9 123 129-267 206-355 (670)
64 KOG4370 Ral-GTPase effector RL 31.0 64 0.0014 32.9 4.1 50 199-248 117-179 (514)
65 PF13606 Ank_3: Ankyrin repeat 27.3 37 0.0008 20.9 1.2 16 322-337 11-26 (30)
66 KOG0193 Serine/threonine prote 24.7 9.9 0.00021 40.3 -2.9 41 77-117 175-221 (678)
67 PF03471 CorC_HlyC: Transporte 24.2 95 0.0021 23.5 3.2 46 168-219 4-49 (81)
68 cd08048 TAF11 TATA Binding Pro 21.5 2.7E+02 0.0058 21.9 5.3 52 176-231 17-83 (85)
No 1
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.3e-38 Score=288.58 Aligned_cols=188 Identities=27% Similarity=0.426 Sum_probs=150.2
Q ss_pred CCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhH
Q 018870 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALA 209 (349)
Q Consensus 130 ~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lL 209 (349)
+++||+||+.++++. +..||.+|.+|++||+++|+++|||||++|+..++++|++.+|.+.+....+..++|+||++|
T Consensus 2 ~~vFGvpL~~~~~r~--g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL 79 (220)
T cd04375 2 KNVFGVPLLVNLQRT--GQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADML 79 (220)
T ss_pred CCEecCcHHHHHhhc--CCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHH
Confidence 479999999999875 678999999999999999999999999999999999999999987654444568999999999
Q ss_pred HHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchhhhcc
Q 018870 210 KYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLAMEMA 259 (349)
Q Consensus 210 K~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLAivFg 259 (349)
|.|||+||+||||+++|+.|+++ .++++.++.++..||+ |+++|||+|||
T Consensus 80 K~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfa 159 (220)
T cd04375 80 KQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLA 159 (220)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHh
Confidence 99999999999999999999986 3567889999999998 99999999999
Q ss_pred ccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHhchhh
Q 018870 260 PVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAI 339 (349)
Q Consensus 260 PtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~~~~i 339 (349)
||||+....+........+...+...... ...++ ++ ...++++|.+||+||+.|
T Consensus 160 P~L~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l-----~e---------------~~~~~~~v~~lI~~~~~l 213 (220)
T cd04375 160 PSLFHLNTSRRENSSPARRMQRKKSLGKP------DQKEL-----SE---------------NKAAHQCLAYMIEECNTL 213 (220)
T ss_pred hhhcCCCCCCcccccchhhhccccccCCC------cHHHH-----HH---------------HHHHHHHHHHHHHHHHHH
Confidence 99999877653211110000000000000 00011 11 356889999999999999
Q ss_pred cCCCcc
Q 018870 340 FTDANE 345 (349)
Q Consensus 340 F~~~~e 345 (349)
|.++.+
T Consensus 214 f~vp~~ 219 (220)
T cd04375 214 FMVPKE 219 (220)
T ss_pred hcCCCC
Confidence 999976
No 2
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=8e-37 Score=277.56 Aligned_cols=141 Identities=26% Similarity=0.490 Sum_probs=127.0
Q ss_pred CccCCchHHHHhhhc--CCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhh
Q 018870 131 DVFGVPIEVTVQRQQ--YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 208 (349)
Q Consensus 131 ~vFGv~L~~l~~~~~--~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~l 208 (349)
++||+||++++.+++ ....||.+|.+|++||+++|+++|||||++|+..++++|++.||.|...++....|+|+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 589999999998763 235699999999999999999999999999999999999999999987666567899999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHH--------HHHHHHHHHHHhhhh------------------------hcccchhh
Q 018870 209 AKYYLASLPEPLTTFELYDEIKGAR--------SSIHAMRNTLKKLSN------------------------MDARSLAM 256 (349)
Q Consensus 209 LK~fLReLPePLl~~~ly~~~~~~~--------~~i~~l~~ll~~LP~------------------------M~~~NLAi 256 (349)
||.|||+||+||+|+++|+.|+.+. ..+..+++++..||+ |+++|||+
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 160 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLAT 160 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHH
Confidence 9999999999999999999998763 346678889999998 99999999
Q ss_pred hccccccccCCCChh
Q 018870 257 EMAPVIMWQKERKPE 271 (349)
Q Consensus 257 vFgPtLl~~~~~~~~ 271 (349)
||||+|+|++..++.
T Consensus 161 vf~P~llr~~~~~~~ 175 (199)
T cd04390 161 VFGPNILRPKVEDPA 175 (199)
T ss_pred HhccccCCCCCCCHH
Confidence 999999999887763
No 3
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9e-37 Score=280.11 Aligned_cols=167 Identities=26% Similarity=0.416 Sum_probs=141.3
Q ss_pred cCCchHHHHhhhcC---------CCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCC-CCCCCCh
Q 018870 133 FGVPIEVTVQRQQY---------GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNP 202 (349)
Q Consensus 133 FGv~L~~l~~~~~~---------~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~-~~~~~d~ 202 (349)
||+||+.++++++. ...||.+|.+|++||+++|+++|||||++|+..++++|++.||.+.... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 99999999999752 2369999999999999999999999999999999999999999876432 2245799
Q ss_pred hhHHhhHHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh----------------------------
Q 018870 203 FDVAALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN---------------------------- 248 (349)
Q Consensus 203 ~~vA~lLK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~---------------------------- 248 (349)
|+||++||.|||+||+||+|+++|+.|+++. .+...++.++..||+
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~N 160 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGS 160 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 9999999999999999999999999999873 345556667777776
Q ss_pred -hcccchhhhccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHH
Q 018870 249 -MDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIE 327 (349)
Q Consensus 249 -M~~~NLAivFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 327 (349)
|+++|||+||||||+|++..++. .+.....+++
T Consensus 161 kM~~~NLAivf~P~Ll~~~~~~~~----------------------------------------------~~~~~~~~~~ 194 (213)
T cd04397 161 KMDIHNLATVITPNILYSKTDNPN----------------------------------------------TGDEYFLAIE 194 (213)
T ss_pred cCChHHhHHhhcccccCCCCCCcc----------------------------------------------hHHHHHHHHH
Confidence 99999999999999998776421 0001346789
Q ss_pred HHHHHHHhchhhcCCCcc
Q 018870 328 VVQCLMEQHNAIFTDANE 345 (349)
Q Consensus 328 vV~~LIe~~~~iF~~~~e 345 (349)
||++||+||+.||.+++|
T Consensus 195 vv~~LI~n~~~if~vp~~ 212 (213)
T cd04397 195 AVNYLIENNEEFCEVPDE 212 (213)
T ss_pred HHHHHHHhHHHHhcCCCC
Confidence 999999999999999986
No 4
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=8.4e-37 Score=276.46 Aligned_cols=135 Identities=21% Similarity=0.394 Sum_probs=121.8
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCC-CCCC--CCCChhhHHhhH
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLP--EGVNPFDVAALA 209 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~-~~~~--~~~d~~~vA~lL 209 (349)
||+||+.+++++ +..||.+|.+|++||+++|+++|||||++|+..++++|++.||++.. .++. ...|+|+||++|
T Consensus 1 FG~~L~~~~~~~--~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 78 (194)
T cd04372 1 YGCDLTTLVKAH--NTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGAL 78 (194)
T ss_pred CCCChHHHHHHc--CCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHH
Confidence 999999999986 57899999999999999999999999999999999999999998543 3332 235899999999
Q ss_pred HHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhhcc
Q 018870 210 KYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEMA 259 (349)
Q Consensus 210 K~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivFg 259 (349)
|.|||+||+||+|+++|+.|+++. +++..++.++.+||+ |++.|||+|||
T Consensus 79 K~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~ 158 (194)
T cd04372 79 KLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFG 158 (194)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHh
Confidence 999999999999999999999873 467789999999998 99999999999
Q ss_pred ccccccCCCC
Q 018870 260 PVIMWQKERK 269 (349)
Q Consensus 260 PtLl~~~~~~ 269 (349)
|||+++++.+
T Consensus 159 P~Ll~~~~~~ 168 (194)
T cd04372 159 PTLMRPPEDS 168 (194)
T ss_pred cccCCCCCcc
Confidence 9999998754
No 5
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3e-36 Score=277.16 Aligned_cols=175 Identities=23% Similarity=0.361 Sum_probs=144.7
Q ss_pred ccCCchHHHHhhhc---CCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCC--CCCCCCChhhHH
Q 018870 132 VFGVPIEVTVQRQQ---YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SLPEGVNPFDVA 206 (349)
Q Consensus 132 vFGv~L~~l~~~~~---~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~--~~~~~~d~~~vA 206 (349)
+||+||++++++++ ++..||.+|.+|++||+++|+++|||||++|+..++++|++.+|.+... ...+..|+|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 79999999999864 4678999999999999999999999999999999999999999986421 223468999999
Q ss_pred hhHHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhh
Q 018870 207 ALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAM 256 (349)
Q Consensus 207 ~lLK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAi 256 (349)
++||.|||+||+||+|+++|+.|+.+. .++..++.++..||+ ||++|||+
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 160 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAM 160 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHH
Confidence 999999999999999999999999873 467788889999997 99999999
Q ss_pred hccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHhc
Q 018870 257 EMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQH 336 (349)
Q Consensus 257 vFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~~ 336 (349)
|||||||++...++.+ . -+.. + .+......+.||++||+|+
T Consensus 161 vfaP~l~~~~~~~~~~---------------~--------~~~~----~------------~~~~~~~~~~iv~~lI~~~ 201 (216)
T cd04391 161 IMAPNLFPPRGKHSKD---------------N--------ESLQ----E------------EVNMAAGCANIMRLLIRYQ 201 (216)
T ss_pred HhccccCCCCCCCCCc---------------c--------hhHH----H------------HHHHHHHHHHHHHHHHHhH
Confidence 9999999987654310 0 0000 0 0001134578999999999
Q ss_pred hhhcCCCcc
Q 018870 337 NAIFTDANE 345 (349)
Q Consensus 337 ~~iF~~~~e 345 (349)
+.||.+++.
T Consensus 202 ~~if~~p~~ 210 (216)
T cd04391 202 DLLWTVPSF 210 (216)
T ss_pred HHHhcCCHH
Confidence 999999875
No 6
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.8e-35 Score=268.27 Aligned_cols=169 Identities=25% Similarity=0.465 Sum_probs=144.0
Q ss_pred CCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCC--CCCCCChhhHHh
Q 018870 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAA 207 (349)
Q Consensus 130 ~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~--~~~~~d~~~vA~ 207 (349)
+++||+||+++++++ +..||.+|.+|+.||+++|+++|||||++|+..++++|++.+|.|.... .....|+|+||+
T Consensus 2 ~~~FG~~L~~~~~~~--~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~ 79 (203)
T cd04386 2 KPVFGTPLEEHLKRT--GREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVAS 79 (203)
T ss_pred CCcCCCCHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHH
Confidence 479999999999875 5789999999999999999999999999999999999999999986432 223579999999
Q ss_pred hHHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhh
Q 018870 208 LAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAME 257 (349)
Q Consensus 208 lLK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAiv 257 (349)
+||.|||+||+||+|+++|+.|+++. .++..++.++.+||. |+++|||+|
T Consensus 80 ~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~ 159 (203)
T cd04386 80 ALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIV 159 (203)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHH
Confidence 99999999999999999999999873 467889999999998 999999999
Q ss_pred ccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHhch
Q 018870 258 MAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHN 337 (349)
Q Consensus 258 FgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~~~ 337 (349)
|||+|+|++..+... +.+ . ......+.+|++||+||+
T Consensus 160 faP~ll~~~~~~~~~--------------------------~~~--~---------------~~~~~~~~iv~~LI~~~~ 196 (203)
T cd04386 160 LAPNLLWAKNEGSLA--------------------------EMA--A---------------GTSVHVVAIVELIISHAD 196 (203)
T ss_pred hccccCCCCCCChhh--------------------------hhh--h---------------hhhHHHHHHHHHHHHhHH
Confidence 999999988754210 000 0 002346789999999999
Q ss_pred hhcCCC
Q 018870 338 AIFTDA 343 (349)
Q Consensus 338 ~iF~~~ 343 (349)
.||.+.
T Consensus 197 ~iF~~~ 202 (203)
T cd04386 197 WFFPGE 202 (203)
T ss_pred HhCCCC
Confidence 999874
No 7
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=3e-35 Score=263.80 Aligned_cols=131 Identities=30% Similarity=0.552 Sum_probs=121.2
Q ss_pred cCCchHHHHhhhc--CCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHH
Q 018870 133 FGVPIEVTVQRQQ--YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 210 (349)
Q Consensus 133 FGv~L~~l~~~~~--~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK 210 (349)
||+||++++++++ .+..||.+|.+|++||+++|+++|||||++|+..++++|++.||++...++ +++|+|+||++||
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~-~~~d~h~va~lLK 79 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNL-EEYEPPTVASLLK 79 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCc-cccChHHHHHHHH
Confidence 9999999999863 467899999999999999999999999999999999999999999987665 4589999999999
Q ss_pred HHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchhhhccc
Q 018870 211 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLAMEMAP 260 (349)
Q Consensus 211 ~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLAivFgP 260 (349)
.|||+||+||||+++|+.|+++ .+++..++.++.+||+ |+++|||+||||
T Consensus 80 ~fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 80 QYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 9999999999999999999886 3568889999999998 999999999999
Q ss_pred cccc
Q 018870 261 VIMW 264 (349)
Q Consensus 261 tLl~ 264 (349)
||+.
T Consensus 160 ~l~~ 163 (182)
T cd04381 160 TVQI 163 (182)
T ss_pred cccC
Confidence 9975
No 8
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.3e-35 Score=264.36 Aligned_cols=135 Identities=23% Similarity=0.459 Sum_probs=123.5
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHH
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~f 212 (349)
||+||+.+++++ +..||.+|.+|++||+++|+++|||||++|+..++++|++.||+|.......+.|+|+||++||.|
T Consensus 1 FGv~l~~l~~~~--~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~f 78 (200)
T cd04408 1 FGVDFSQLPRDF--PEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHF 78 (200)
T ss_pred CCCCHHHHHHhC--CCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHH
Confidence 999999999986 688999999999999999999999999999999999999999998764333568999999999999
Q ss_pred HhcCCCCCCChHHHHHHHHHH------------------HHHHHHHHHHHhhhh------------------------hc
Q 018870 213 LASLPEPLTTFELYDEIKGAR------------------SSIHAMRNTLKKLSN------------------------MD 250 (349)
Q Consensus 213 LReLPePLl~~~ly~~~~~~~------------------~~i~~l~~ll~~LP~------------------------M~ 250 (349)
||+||+||+|+++|+.|+++. +++..++.++..||+ |+
T Consensus 79 LReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~ 158 (200)
T cd04408 79 LKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMS 158 (200)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999998863 246788999999998 99
Q ss_pred ccchhhhccccccccCCCC
Q 018870 251 ARSLAMEMAPVIMWQKERK 269 (349)
Q Consensus 251 ~~NLAivFgPtLl~~~~~~ 269 (349)
++|||+||||+||+++..+
T Consensus 159 ~~NLAivf~P~Ll~~~~~~ 177 (200)
T cd04408 159 PNNLGIVFGPTLLRPLVGG 177 (200)
T ss_pred HhHhhhhhccccCCCCCCC
Confidence 9999999999999988754
No 9
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.2e-35 Score=263.30 Aligned_cols=136 Identities=24% Similarity=0.474 Sum_probs=124.3
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCC--CCCCChhhHHhhHH
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASL--PEGVNPFDVAALAK 210 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~--~~~~d~~~vA~lLK 210 (349)
||+||+++++++ +..||.+|.+|++||+++|+++|||||++|+...+++|+..+|.+...++ ....|+|+||++||
T Consensus 1 FGv~L~~~~~~~--~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK 78 (187)
T cd04403 1 FGCHLEALCQRE--NSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALK 78 (187)
T ss_pred CCCChHHHHHHc--CCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHH
Confidence 999999999986 57899999999999999999999999999999999999999999876543 23579999999999
Q ss_pred HHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchhhhccc
Q 018870 211 YYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLAMEMAP 260 (349)
Q Consensus 211 ~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLAivFgP 260 (349)
.|||+||+||||+++|+.|+++ .+++..++.++.+||+ ||++|||+||||
T Consensus 79 ~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P 158 (187)
T cd04403 79 LFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGP 158 (187)
T ss_pred HHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccc
Confidence 9999999999999999999987 3467889999999998 999999999999
Q ss_pred cccccCCCCh
Q 018870 261 VIMWQKERKP 270 (349)
Q Consensus 261 tLl~~~~~~~ 270 (349)
+|+|++..+.
T Consensus 159 ~ll~~~~~~~ 168 (187)
T cd04403 159 TLLRPEQETG 168 (187)
T ss_pred cccCCCCcch
Confidence 9999887653
No 10
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-34 Score=261.68 Aligned_cols=161 Identities=24% Similarity=0.400 Sum_probs=141.1
Q ss_pred ccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHH
Q 018870 132 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKY 211 (349)
Q Consensus 132 vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~ 211 (349)
+||+||+.+++ +..||.+|.+|++||+++|+++|||||++|+..+++++++.+|.+...++ +.+|+|+||++||+
T Consensus 1 ~FG~~L~~~~~----~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~-~~~~~~~va~~lK~ 75 (192)
T cd04402 1 LFGQPLSNICE----DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDL-KAEPVLLLASVLKD 75 (192)
T ss_pred CCCCcHHHHhC----CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCC-ccCCHHHHHHHHHH
Confidence 69999999998 36799999999999999999999999999999999999999999976665 56899999999999
Q ss_pred HHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhhcccc
Q 018870 212 YLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEMAPV 261 (349)
Q Consensus 212 fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPt 261 (349)
|||+||+||+|++.|+.|+.+. .++..++.++.+||+ ||++|||+||||+
T Consensus 76 flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~ 155 (192)
T cd04402 76 FLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPS 155 (192)
T ss_pred HHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhcccc
Confidence 9999999999999999999873 467889999999998 9999999999999
Q ss_pred ccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHhchhhcC
Q 018870 262 IMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFT 341 (349)
Q Consensus 262 Ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~~~~iF~ 341 (349)
|++++..+.. .+ ++ ......+|++||+|++.||.
T Consensus 156 l~~~~~~~~~--------------------------~~-----~~---------------~~~~~~~~~~LI~~~~~IF~ 189 (192)
T cd04402 156 LLWPPASSEL--------------------------QN-----ED---------------LKKVTSLVQFLIENCQEIFG 189 (192)
T ss_pred ccCCCCccHH--------------------------HH-----HH---------------HHhhhHHHHHHHHhHHHhCC
Confidence 9998865310 00 00 12345899999999999998
Q ss_pred CC
Q 018870 342 DA 343 (349)
Q Consensus 342 ~~ 343 (349)
++
T Consensus 190 ~~ 191 (192)
T cd04402 190 ED 191 (192)
T ss_pred CC
Confidence 75
No 11
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-34 Score=263.58 Aligned_cols=138 Identities=27% Similarity=0.419 Sum_probs=122.4
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCC-CCCC--CCCChhhHHhhH
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLP--EGVNPFDVAALA 209 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~-~~~~--~~~d~~~vA~lL 209 (349)
||+||+.++++++++..||.+|.+|++||+++|+++|||||++|+..++++|++.||++.. .++. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 9999999999876678999999999999999999999999999999999999999998753 3332 234899999999
Q ss_pred HHHHhcCCCCCCChHHHHHHHHHHH---------HHHHHHHHHHhhhh------------------------hcccchhh
Q 018870 210 KYYLASLPEPLTTFELYDEIKGARS---------SIHAMRNTLKKLSN------------------------MDARSLAM 256 (349)
Q Consensus 210 K~fLReLPePLl~~~ly~~~~~~~~---------~i~~l~~ll~~LP~------------------------M~~~NLAi 256 (349)
|.|||+||+||||+++|+.|+++.. ....++.++++||. |+++|||+
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAi 160 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAV 160 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHH
Confidence 9999999999999999999998731 24567888999998 99999999
Q ss_pred hccccccccCCCCh
Q 018870 257 EMAPVIMWQKERKP 270 (349)
Q Consensus 257 vFgPtLl~~~~~~~ 270 (349)
||||+||++++.+.
T Consensus 161 vf~P~Ll~~~~~~~ 174 (207)
T cd04379 161 CFGPVLMFCSQEFS 174 (207)
T ss_pred hhccccCCCCcccc
Confidence 99999999988753
No 12
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.9e-34 Score=264.31 Aligned_cols=136 Identities=23% Similarity=0.482 Sum_probs=122.8
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHH
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~f 212 (349)
||+||+++++++ +..||.+|.+|+++|+++|+++|||||++|+..++++|++.||+|......+++|+|+||++||.|
T Consensus 1 FG~~L~~~~~~~--~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~f 78 (211)
T cd04409 1 FGADFAQVAKKS--PDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLY 78 (211)
T ss_pred CCCChHHHHHhC--CCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHH
Confidence 999999999986 578999999999999999999999999999999999999999998764434568999999999999
Q ss_pred HhcCCCCCCChHHHHHHHHHHH----------------------------HHHHHHHHHHhhhh----------------
Q 018870 213 LASLPEPLTTFELYDEIKGARS----------------------------SIHAMRNTLKKLSN---------------- 248 (349)
Q Consensus 213 LReLPePLl~~~ly~~~~~~~~----------------------------~i~~l~~ll~~LP~---------------- 248 (349)
||+||+||||+++|+.|+++.. .+..++.++.+||.
T Consensus 79 LReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V 158 (211)
T cd04409 79 LRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRV 158 (211)
T ss_pred HHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988632 14568889999998
Q ss_pred --------hcccchhhhccccccccCCCCh
Q 018870 249 --------MDARSLAMEMAPVIMWQKERKP 270 (349)
Q Consensus 249 --------M~~~NLAivFgPtLl~~~~~~~ 270 (349)
|+++|||+||||+|||++..++
T Consensus 159 ~~~s~~NkM~~~NLAivf~P~Llrp~~~~~ 188 (211)
T cd04409 159 SEQAEENKMSASNLGIIFGPTLIRPRPTDA 188 (211)
T ss_pred HcccccCCCChHHhhhhccccccCCCCCCc
Confidence 9999999999999999987653
No 13
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-34 Score=261.67 Aligned_cols=140 Identities=26% Similarity=0.532 Sum_probs=126.5
Q ss_pred CCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhh
Q 018870 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 208 (349)
Q Consensus 129 ~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~l 208 (349)
+.++||+||+.++++.+.+..||.+|.+|++||+++|+++|||||++|+...++++++.+|.|...++....|+|+||++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 45799999999998765457899999999999999999999999999999999999999999876666443599999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHH-----HHHHHHHHHHHHhhhh------------------------hcccchhhhcc
Q 018870 209 AKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSN------------------------MDARSLAMEMA 259 (349)
Q Consensus 209 LK~fLReLPePLl~~~ly~~~~~~-----~~~i~~l~~ll~~LP~------------------------M~~~NLAivFg 259 (349)
||.|||+||+||+|.++|+.++.+ ..++..++.++++||+ |+++|||+|||
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfa 161 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFG 161 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeee
Confidence 999999999999999999999876 3467788999999998 99999999999
Q ss_pred ccccccCCC
Q 018870 260 PVIMWQKER 268 (349)
Q Consensus 260 PtLl~~~~~ 268 (349)
|+|+|+++.
T Consensus 162 P~l~~~~~~ 170 (195)
T cd04404 162 PNLLWAKDA 170 (195)
T ss_pred ccccCCCCc
Confidence 999998765
No 14
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=2.3e-34 Score=262.30 Aligned_cols=135 Identities=23% Similarity=0.481 Sum_probs=123.2
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHH
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~f 212 (349)
||+||+.+++++ +..||.+|.+|++||+++|+++|||||++|+..++++|++.|+++......+++++|+||++||.|
T Consensus 1 FG~~L~~~~~~~--~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~f 78 (203)
T cd04378 1 FGVDFSQVPRDF--PDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLF 78 (203)
T ss_pred CCCChHHHHHHC--CCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 999999999986 578999999999999999999999999999999999999999998754334568999999999999
Q ss_pred HhcCCCCCCChHHHHHHHHHHH--------------------HHHHHHHHHHhhhh------------------------
Q 018870 213 LASLPEPLTTFELYDEIKGARS--------------------SIHAMRNTLKKLSN------------------------ 248 (349)
Q Consensus 213 LReLPePLl~~~ly~~~~~~~~--------------------~i~~l~~ll~~LP~------------------------ 248 (349)
||+||+||+|+++|+.|+++.. ++..++.++..||.
T Consensus 79 LReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 158 (203)
T cd04378 79 LRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENK 158 (203)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999988632 35678999999998
Q ss_pred hcccchhhhccccccccCCCC
Q 018870 249 MDARSLAMEMAPVIMWQKERK 269 (349)
Q Consensus 249 M~~~NLAivFgPtLl~~~~~~ 269 (349)
|+++|||+||||+|||++..+
T Consensus 159 M~~~NLaivf~P~Ll~~~~~~ 179 (203)
T cd04378 159 MSPNNLGIVFGPTLIRPRPGD 179 (203)
T ss_pred CCHHHhhhhhccccCCCCCCC
Confidence 999999999999999998764
No 15
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.2e-34 Score=261.19 Aligned_cols=168 Identities=25% Similarity=0.316 Sum_probs=138.6
Q ss_pred ccCCchHHHHhhhc-CCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHH
Q 018870 132 VFGVPIEVTVQRQQ-YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 210 (349)
Q Consensus 132 vFGv~L~~l~~~~~-~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK 210 (349)
+||+||++++.+.. .+..||.+|.+|++||++ ++++|||||++|+..++++|++.+|+|.... ...++|+||++||
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~--~~~~~~~vaslLK 77 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL--SSALPCDVAGLLK 77 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc--cccCHHHHHHHHH
Confidence 79999999987532 357899999999999987 5999999999999999999999999987543 3578999999999
Q ss_pred HHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhhccc
Q 018870 211 YYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEMAP 260 (349)
Q Consensus 211 ~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivFgP 260 (349)
.|||+||+||+|+++|+.|+.+. .++..++.++.+||. |+++|||+||||
T Consensus 78 ~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 78 QFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 99999999999999999999873 345667788889997 999999999999
Q ss_pred cccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHhchhhc
Q 018870 261 VIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIF 340 (349)
Q Consensus 261 tLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~~~~iF 340 (349)
|||++.+.... +. .....+ ......||++||+|++.||
T Consensus 158 ~L~~~~~~~~~---------------~s------------~~~~~~---------------~~~~~~vv~~lI~~~~~i~ 195 (202)
T cd04394 158 NLFQSEEGGEK---------------MS------------SSTEKR---------------LRLQAAVVQTLIDNASNIG 195 (202)
T ss_pred eeecCCCcccc---------------cc------------hhHHHh---------------HHHHHHHHHHHHHHHHHHc
Confidence 99998754210 00 000000 1245689999999999999
Q ss_pred CCCc
Q 018870 341 TDAN 344 (349)
Q Consensus 341 ~~~~ 344 (349)
.+++
T Consensus 196 ~vp~ 199 (202)
T cd04394 196 IVPD 199 (202)
T ss_pred cCCc
Confidence 9985
No 16
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=3.2e-34 Score=258.01 Aligned_cols=133 Identities=26% Similarity=0.454 Sum_probs=120.6
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHH
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~f 212 (349)
||+||+.++. .+..||.+|.+|++||+++|+++|||||++|+..++++|++.||.+......+++|+|+||++||.|
T Consensus 1 FGv~L~~~~~---~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~f 77 (186)
T cd04407 1 FGVRVGSLTS---NKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQW 77 (186)
T ss_pred CCCcHHHHHh---CCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHH
Confidence 9999999986 2678999999999999999999999999999999999999999988643333568999999999999
Q ss_pred HhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhhccccc
Q 018870 213 LASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEMAPVI 262 (349)
Q Consensus 213 LReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPtL 262 (349)
||+||+||+|+++|+.|+.+. +++..++.++..||. |+++|||+||||||
T Consensus 78 lReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~L 157 (186)
T cd04407 78 LRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCL 157 (186)
T ss_pred HHhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccc
Confidence 999999999999999999873 467889999999998 99999999999999
Q ss_pred cccCCC
Q 018870 263 MWQKER 268 (349)
Q Consensus 263 l~~~~~ 268 (349)
+|+++.
T Consensus 158 l~~~~~ 163 (186)
T cd04407 158 LRCPDS 163 (186)
T ss_pred cCCCCC
Confidence 997653
No 17
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=2.9e-34 Score=258.76 Aligned_cols=136 Identities=23% Similarity=0.440 Sum_probs=123.5
Q ss_pred CccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCC--CCCCCChhhHHhh
Q 018870 131 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAAL 208 (349)
Q Consensus 131 ~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~--~~~~~d~~~vA~l 208 (349)
++||++|+++++.+ +..||.+|.+|++||+++|+++|||||++|+..+++++++.||+|.+.. ..+..|+|+||++
T Consensus 1 k~FG~~L~~~~~~~--~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~l 78 (188)
T cd04383 1 KLFNGSLEEYIQDS--GQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGV 78 (188)
T ss_pred CcCCccHHHHHHHC--CCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence 48999999999875 6889999999999999999999999999999999999999999987643 2346899999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhhc
Q 018870 209 AKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEM 258 (349)
Q Consensus 209 LK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivF 258 (349)
||.|||+||+||||+++|+.|+++. +++..+++++.+||+ ||++|||+||
T Consensus 79 LK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (188)
T cd04383 79 LKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICF 158 (188)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeee
Confidence 9999999999999999999999873 467789999999998 9999999999
Q ss_pred cccccccCCC
Q 018870 259 APVIMWQKER 268 (349)
Q Consensus 259 gPtLl~~~~~ 268 (349)
||+|++.++.
T Consensus 159 ~P~L~~~p~~ 168 (188)
T cd04383 159 GPTLMPVPEG 168 (188)
T ss_pred eccccCCCCC
Confidence 9999997653
No 18
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-34 Score=260.81 Aligned_cols=136 Identities=25% Similarity=0.506 Sum_probs=123.4
Q ss_pred CccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCC---CCCChhhHHh
Q 018870 131 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP---EGVNPFDVAA 207 (349)
Q Consensus 131 ~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~---~~~d~~~vA~ 207 (349)
++||++|+++++++ +..||.+|.+|++||+++|+ +|||||++|+..++++|++.||++...++. ...|+|+||+
T Consensus 1 ~vFG~~L~~~~~~~--g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~ 77 (195)
T cd04384 1 RVFGCDLTEHLLNS--GQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSS 77 (195)
T ss_pred CcCCccHHHHHHHc--CCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHH
Confidence 48999999999875 68899999999999999999 699999999999999999999998765542 2469999999
Q ss_pred hHHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhh
Q 018870 208 LAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAME 257 (349)
Q Consensus 208 lLK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAiv 257 (349)
+||.|||+||+||||+++|+.|+++. +++..++.++.+||+ |+++|||+|
T Consensus 78 lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 157 (195)
T cd04384 78 LCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIV 157 (195)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHh
Confidence 99999999999999999999999873 467889999999998 999999999
Q ss_pred ccccccccCCCC
Q 018870 258 MAPVIMWQKERK 269 (349)
Q Consensus 258 FgPtLl~~~~~~ 269 (349)
|||||+++++..
T Consensus 158 f~P~L~~~~~~~ 169 (195)
T cd04384 158 WAPNLLRSKQIE 169 (195)
T ss_pred hhhhcCCCCccc
Confidence 999999987643
No 19
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-33 Score=256.55 Aligned_cols=138 Identities=26% Similarity=0.442 Sum_probs=122.7
Q ss_pred ccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCC-CC--CCCCChhhHHhh
Q 018870 132 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SL--PEGVNPFDVAAL 208 (349)
Q Consensus 132 vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~-~~--~~~~d~~~vA~l 208 (349)
+||+||+...... .+..||.+|.+|+++|+.+|+++|||||++|+..++++|++.+|++... .. .+..|+|+||++
T Consensus 1 ~FGvpl~~~~~~~-~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~l 79 (196)
T cd04395 1 TFGVPLDDCPPSS-ENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSL 79 (196)
T ss_pred CCCccHHHHhccc-CCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHH
Confidence 5999999887653 3578999999999999999999999999999999999999999998642 22 234799999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchhhhc
Q 018870 209 AKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLAMEM 258 (349)
Q Consensus 209 LK~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLAivF 258 (349)
||.|||+||+||+|.++|+.|+.+ .+++..+++++++||+ |+++|||+||
T Consensus 80 lK~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 80 LKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 999999999999999999999886 3567889999999998 9999999999
Q ss_pred cccccccCCCCh
Q 018870 259 APVIMWQKERKP 270 (349)
Q Consensus 259 gPtLl~~~~~~~ 270 (349)
||+|+|+++.+.
T Consensus 160 aP~l~r~~~~~~ 171 (196)
T cd04395 160 GPTLVRTSDDNM 171 (196)
T ss_pred ccccCCCCCCCH
Confidence 999999977653
No 20
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.2e-34 Score=259.57 Aligned_cols=160 Identities=23% Similarity=0.382 Sum_probs=132.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHHHhcCCCCCCChHHH
Q 018870 147 GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELY 226 (349)
Q Consensus 147 ~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~fLReLPePLl~~~ly 226 (349)
++.||.+|.+|++||+++|+++|||||++|+..++++|++.||.|....+.+..|+|+||++||.|||+||+||+|+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 56899999999999999999999999999999999999999999988777667899999999999999999999999999
Q ss_pred HHHHHHH-----HHHHHHHHHHHhhhh-----------------------------------hcccchhhhccccccccC
Q 018870 227 DEIKGAR-----SSIHAMRNTLKKLSN-----------------------------------MDARSLAMEMAPVIMWQK 266 (349)
Q Consensus 227 ~~~~~~~-----~~i~~l~~ll~~LP~-----------------------------------M~~~NLAivFgPtLl~~~ 266 (349)
+.|+.+. +++..++.++.+||+ ||++|||+||||+|+|++
T Consensus 86 ~~~i~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~~ 165 (206)
T cd04376 86 TAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQ 165 (206)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCCC
Confidence 9999873 355666666666665 999999999999999987
Q ss_pred CCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHhchhhcCCCcc
Q 018870 267 ERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANE 345 (349)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~~~~iF~~~~e 345 (349)
..+.. ... ... ..+......+.||++||+||+.||.+++|
T Consensus 166 ~~~~~--------------~~~------~~~-------------------~~~~~~~~~~~vv~~LI~~~~~iF~~~~~ 205 (206)
T cd04376 166 KSGER--------------EFV------QAS-------------------LRIEESTAIINVVQTMIDNYEELFMVSPE 205 (206)
T ss_pred CCccc--------------ccc------hhh-------------------hhHHHHHHHHHHHHHHHHhHHHHcCCCCC
Confidence 75421 000 000 00111234678999999999999999986
No 21
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-33 Score=254.93 Aligned_cols=134 Identities=29% Similarity=0.484 Sum_probs=120.6
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCC-CCCC----CCCChhhHHh
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLP----EGVNPFDVAA 207 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~-~~~~----~~~d~~~vA~ 207 (349)
||++|++++.++ +..||.+|.+|+++|+++|+++|||||++|+..+++++++.+|++.. .... ...|+|+||+
T Consensus 1 FG~~L~~~~~~~--~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~ 78 (192)
T cd04398 1 FGVPLEDLILRE--GDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVAS 78 (192)
T ss_pred CCCChHHHHHHc--CCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHH
Confidence 999999999986 57899999999999999999999999999999999999999998763 2211 2469999999
Q ss_pred hHHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhh
Q 018870 208 LAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAME 257 (349)
Q Consensus 208 lLK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAiv 257 (349)
+||.|||+||+||+|+++|+.|+++. .++..++.++++||. |+++|||+|
T Consensus 79 ~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaiv 158 (192)
T cd04398 79 LLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAII 158 (192)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHH
Confidence 99999999999999999999999873 366788899999998 999999999
Q ss_pred ccccccccCCC
Q 018870 258 MAPVIMWQKER 268 (349)
Q Consensus 258 FgPtLl~~~~~ 268 (349)
|||+|++++..
T Consensus 159 f~P~l~~~~~~ 169 (192)
T cd04398 159 WGPTLMNAAPD 169 (192)
T ss_pred HhhhhCCCCcc
Confidence 99999998764
No 22
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-33 Score=261.84 Aligned_cols=136 Identities=29% Similarity=0.542 Sum_probs=119.9
Q ss_pred ccCCchHHHHhhhc-------------CCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCC----C
Q 018870 132 VFGVPIEVTVQRQQ-------------YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN----A 194 (349)
Q Consensus 132 vFGv~L~~l~~~~~-------------~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~----~ 194 (349)
||||+|++.++..+ ....||.+|.+|++||+++|+++|||||++|+..++++|++.||.+.+ .
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 79999999998663 124799999999999999999999999999999999999999998643 3
Q ss_pred CCCCCCChhhHHhhHHHHHhcCCCCCCChHHHHHHHHHH-----------------------HHHHHHHHHHHhhhh---
Q 018870 195 SLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGAR-----------------------SSIHAMRNTLKKLSN--- 248 (349)
Q Consensus 195 ~~~~~~d~~~vA~lLK~fLReLPePLl~~~ly~~~~~~~-----------------------~~i~~l~~ll~~LP~--- 248 (349)
++ +.+++|+||++||.|||+||+||+|+++|+.|+++. +++..++.++.+||+
T Consensus 81 ~~-~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~ 159 (225)
T cd04396 81 DW-DGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNR 159 (225)
T ss_pred Cc-cCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHH
Confidence 33 568999999999999999999999999999997642 346678899999998
Q ss_pred ---------------------hcccchhhhccccccccCCC
Q 018870 249 ---------------------MDARSLAMEMAPVIMWQKER 268 (349)
Q Consensus 249 ---------------------M~~~NLAivFgPtLl~~~~~ 268 (349)
|+++|||+|||||||++++.
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~ 200 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDH 200 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCcc
Confidence 99999999999999997654
No 23
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-33 Score=253.64 Aligned_cols=138 Identities=28% Similarity=0.388 Sum_probs=123.9
Q ss_pred cCCchHHHHhhhc---CCCCCCHHHHHHHHHHH-hcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhh
Q 018870 133 FGVPIEVTVQRQQ---YGKPVPHILVKCADYLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 208 (349)
Q Consensus 133 FGv~L~~l~~~~~---~~~~VP~ii~~ci~~Le-~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~l 208 (349)
||++|++++.+++ ++..||.+|..|+++|. .+|+++|||||++|+...++++++.+|++... +....|+|+||++
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~-~~~~~d~h~va~l 79 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYP-LSGLEDPHVPASL 79 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCC-ccccCCHHHHHHH
Confidence 9999999998764 35789999999999986 57899999999999999999999999998643 3446799999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhh--------------------------hcccchhhhccccc
Q 018870 209 AKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSN--------------------------MDARSLAMEMAPVI 262 (349)
Q Consensus 209 LK~fLReLPePLl~~~ly~~~~~~~~~i~~l~~ll~~LP~--------------------------M~~~NLAivFgPtL 262 (349)
||.|||+||+||+|+++|+.++.+.+..+.+++++.+||+ |+++|||+||||+|
T Consensus 80 LK~fLReLpePli~~~~~~~~i~~~~~~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l 159 (187)
T cd04389 80 LKLWLRELEEPLIPDALYQQCISASEDPDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNI 159 (187)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHcccc
Confidence 9999999999999999999999986667778888888887 99999999999999
Q ss_pred cccCCCChh
Q 018870 263 MWQKERKPE 271 (349)
Q Consensus 263 l~~~~~~~~ 271 (349)
+|++..++.
T Consensus 160 ~~~~~~~~~ 168 (187)
T cd04389 160 LRCTSDDPR 168 (187)
T ss_pred CCCCCCCHH
Confidence 999888764
No 24
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-33 Score=258.14 Aligned_cols=161 Identities=24% Similarity=0.344 Sum_probs=137.8
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcC--CCCC----CeeeccCCHHHHHHHHHHHhcCCCCCC----CCCCCh
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSG--LNSQ----FLFKAEGDKKVIQHLVSMYNQDPNASL----PEGVNP 202 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~g--l~~e----GIFR~~G~~~~v~~L~~~~d~~~~~~~----~~~~d~ 202 (349)
||+||+.+++++ +..||.+|.+|++||+++| +..+ ||||++|+.+.+++||+.||++...+. .+.+|+
T Consensus 1 FGv~L~~~~~~~--~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv 78 (212)
T cd04399 1 FGVDLETRCRLD--KKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEP 78 (212)
T ss_pred CCCcHHHHHhhc--CCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCH
Confidence 999999999985 5789999999999999875 4333 999999999999999999999876543 346899
Q ss_pred hhHHhhHHHHHhcCCCCCCChHHHHHHHHH------------HHHHHHHHHHHHhhhh----------------------
Q 018870 203 FDVAALAKYYLASLPEPLTTFELYDEIKGA------------RSSIHAMRNTLKKLSN---------------------- 248 (349)
Q Consensus 203 ~~vA~lLK~fLReLPePLl~~~ly~~~~~~------------~~~i~~l~~ll~~LP~---------------------- 248 (349)
|+||++||.|||+||+||+|+++|+.|+++ .+++..++.++.+||.
T Consensus 79 ~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~ 158 (212)
T cd04399 79 STVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKM 158 (212)
T ss_pred HHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999765 3568889999999998
Q ss_pred -----hcccchhhhccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcc
Q 018870 249 -----MDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDF 323 (349)
Q Consensus 249 -----M~~~NLAivFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 323 (349)
|+++|||+||||||+|+...... +++ ..
T Consensus 159 ~~~~kM~~~nLa~vfgp~llr~~~~~~~------------------------------------------~~~-----~~ 191 (212)
T cd04399 159 GESEEEYADKLATSLSREILRPIIESLL------------------------------------------TIG-----DK 191 (212)
T ss_pred ccccccCHHHHHHHhhhhhcCCCccccc------------------------------------------ccc-----cH
Confidence 99999999999999998754321 000 13
Q ss_pred hhHHHHHHHHHhchhhcCC
Q 018870 324 GAIEVVQCLMEQHNAIFTD 342 (349)
Q Consensus 324 ~~i~vV~~LIe~~~~iF~~ 342 (349)
.++.+|+.||+||+.||.+
T Consensus 192 ~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 192 HGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred HHHHHHHHHHHhHHHhccc
Confidence 5678999999999999985
No 25
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.5e-33 Score=252.92 Aligned_cols=134 Identities=24% Similarity=0.445 Sum_probs=119.7
Q ss_pred ccCCchHHHHhhhc---CCCCCCHHHHHHHHHHHhcC-CCCCCeeeccCCHHHHHHHHHHHhcCCCCCCC---CCCChhh
Q 018870 132 VFGVPIEVTVQRQQ---YGKPVPHILVKCADYLVLSG-LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP---EGVNPFD 204 (349)
Q Consensus 132 vFGv~L~~l~~~~~---~~~~VP~ii~~ci~~Le~~g-l~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~---~~~d~~~ 204 (349)
+||+||++++++++ .+..||.+|.+|++||+++| +.+|||||++|+...+++|++.++.+.+.++. ...|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 69999999998753 25689999999999999986 89999999999999999999999998765532 3579999
Q ss_pred HHhhHHHHHhcCCCCCCChHHHHHHHHHH-------HHHHHHHHHHHhhhh------------------------hcccc
Q 018870 205 VAALAKYYLASLPEPLTTFELYDEIKGAR-------SSIHAMRNTLKKLSN------------------------MDARS 253 (349)
Q Consensus 205 vA~lLK~fLReLPePLl~~~ly~~~~~~~-------~~i~~l~~ll~~LP~------------------------M~~~N 253 (349)
||++||.|||+||+||+|+++|+.|..+. +++..++.++++||+ ||++|
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 160 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN 160 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHH
Confidence 99999999999999999999999998763 357788999999998 99999
Q ss_pred hhhhcccccccc
Q 018870 254 LAMEMAPVIMWQ 265 (349)
Q Consensus 254 LAivFgPtLl~~ 265 (349)
||+||||+|+++
T Consensus 161 La~vf~P~L~~~ 172 (190)
T cd04400 161 VCIVFSPTLNIP 172 (190)
T ss_pred hhhhcCCCCCCC
Confidence 999999999765
No 26
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.2e-33 Score=251.30 Aligned_cols=135 Identities=28% Similarity=0.534 Sum_probs=123.3
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCC-CCCChhhHHhhHHH
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLP-EGVNPFDVAALAKY 211 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~-~~~d~~~vA~lLK~ 211 (349)
||+||++++.. +..||.+|.+|++||+++|+.+|||||++|+..++++|++.||.+...++. .++|+|+||++||+
T Consensus 1 FG~pL~~~~~~---~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~ 77 (185)
T cd04373 1 FGVPLANVVTS---EKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKS 77 (185)
T ss_pred CCCchHHHHhC---CCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHH
Confidence 99999999984 689999999999999999999999999999999999999999998766553 35799999999999
Q ss_pred HHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhhcccc
Q 018870 212 YLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEMAPV 261 (349)
Q Consensus 212 fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPt 261 (349)
|||+||+||+|+++|+.|+++. +++..++.+++.||. |+++|||+||||+
T Consensus 78 fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~ 157 (185)
T cd04373 78 FFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPT 157 (185)
T ss_pred HHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccc
Confidence 9999999999999999999873 467889999999998 9999999999999
Q ss_pred ccccCCCCh
Q 018870 262 IMWQKERKP 270 (349)
Q Consensus 262 Ll~~~~~~~ 270 (349)
|+|+...+.
T Consensus 158 L~~~~~~~~ 166 (185)
T cd04373 158 LMRPDFTSM 166 (185)
T ss_pred cCCCCCCCH
Confidence 999876653
No 27
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=4.3e-33 Score=250.69 Aligned_cols=133 Identities=29% Similarity=0.501 Sum_probs=120.0
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHH
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~f 212 (349)
||++|+.++.. +..||.+|.+|++||+++|+++|||||++|+..++++|++.||.+......+.+|+|+||++||.|
T Consensus 1 FGv~L~~l~~~---~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~f 77 (186)
T cd04406 1 FGVELSRLTSE---DRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQW 77 (186)
T ss_pred CCCchHHHHHC---CCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHH
Confidence 99999999864 468999999999999999999999999999999999999999987654334578999999999999
Q ss_pred HhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhhccccc
Q 018870 213 LASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEMAPVI 262 (349)
Q Consensus 213 LReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPtL 262 (349)
||+||+||||+++|+.|+++. +++..++.++.+||. |+++|||+||||||
T Consensus 78 LReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~l 157 (186)
T cd04406 78 LRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCI 157 (186)
T ss_pred HHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccc
Confidence 999999999999999999873 456678888999998 99999999999999
Q ss_pred cccCCC
Q 018870 263 MWQKER 268 (349)
Q Consensus 263 l~~~~~ 268 (349)
+|+++.
T Consensus 158 l~~p~~ 163 (186)
T cd04406 158 LRCPDT 163 (186)
T ss_pred cCCCCC
Confidence 997664
No 28
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=4.8e-33 Score=250.90 Aligned_cols=138 Identities=25% Similarity=0.379 Sum_probs=126.2
Q ss_pred CccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHH
Q 018870 131 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAK 210 (349)
Q Consensus 131 ~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK 210 (349)
++||+||++++++..++..||.+|..|++||+++|+++|||||++|+...++++++.+|.|...++....|+|++|++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 48999999999876566789999999999999999999999999999999999999999998777666689999999999
Q ss_pred HHHhcCCCCCCChHHHHHHHHHH-------HHHHHHHHHHHhhhh------------------------hcccchhhhcc
Q 018870 211 YYLASLPEPLTTFELYDEIKGAR-------SSIHAMRNTLKKLSN------------------------MDARSLAMEMA 259 (349)
Q Consensus 211 ~fLReLPePLl~~~ly~~~~~~~-------~~i~~l~~ll~~LP~------------------------M~~~NLAivFg 259 (349)
.|||+||+||+|++.|+.|+.+. ..+..+++++++||+ ||+.|||+|||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~ 160 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFG 160 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhcc
Confidence 99999999999999999998873 346788999999998 99999999999
Q ss_pred ccccccCCC
Q 018870 260 PVIMWQKER 268 (349)
Q Consensus 260 PtLl~~~~~ 268 (349)
|+||+.+..
T Consensus 161 P~l~~~~~~ 169 (189)
T cd04393 161 PDVFHVYTD 169 (189)
T ss_pred CceeCCCCC
Confidence 999997653
No 29
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.3e-33 Score=254.25 Aligned_cols=158 Identities=23% Similarity=0.377 Sum_probs=131.7
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCC-CCChhhHHhhHHH
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFDVAALAKY 211 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~-~~d~~~vA~lLK~ 211 (349)
||.+|.+ ..++ .|.+||+||++ |+++|||||++|+..++++|++.+|+|.+.++.. .+|+|+||++||.
T Consensus 1 ~~~~~~~--------~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~ 70 (208)
T cd04392 1 FGAPLTE--------EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKG 70 (208)
T ss_pred CCCCccc--------cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHH
Confidence 6777743 2234 68899999998 9999999999999999999999999998776643 5799999999999
Q ss_pred HHhcCCCCCCChHHHHHHHHHH------------------HHHHHHHHHHHhhhh------------------------h
Q 018870 212 YLASLPEPLTTFELYDEIKGAR------------------SSIHAMRNTLKKLSN------------------------M 249 (349)
Q Consensus 212 fLReLPePLl~~~ly~~~~~~~------------------~~i~~l~~ll~~LP~------------------------M 249 (349)
|||+||+||||+++|+.|+.+. .++..++.++.+||+ |
T Consensus 71 flReLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 150 (208)
T cd04392 71 FLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKM 150 (208)
T ss_pred HHHhCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999997653 235678889999998 9
Q ss_pred cccchhhhccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHH
Q 018870 250 DARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVV 329 (349)
Q Consensus 250 ~~~NLAivFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV 329 (349)
+++|||+||||||++++..++.++... ......||
T Consensus 151 ~~~NLAivf~P~Ll~~~~~~~~~~~~~---------------------------------------------~~~~~~iv 185 (208)
T cd04392 151 SADNLALLFTPHLICPRNLTPEDLHEN---------------------------------------------AQKLNSIV 185 (208)
T ss_pred CHHHHHHHhCcccCCCCCCCHHHHHHH---------------------------------------------HHHHHHHH
Confidence 999999999999999887665321110 12345899
Q ss_pred HHHHHhchhhcCCCcc
Q 018870 330 QCLMEQHNAIFTDANE 345 (349)
Q Consensus 330 ~~LIe~~~~iF~~~~e 345 (349)
++||+||+.||.++++
T Consensus 186 ~~lI~~~~~iF~~~~~ 201 (208)
T cd04392 186 TFMIKHSQKLFKAPAY 201 (208)
T ss_pred HHHHHHHHHHcCCcHH
Confidence 9999999999999864
No 30
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=5.4e-33 Score=251.96 Aligned_cols=136 Identities=26% Similarity=0.429 Sum_probs=123.2
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCC--CCCCCChhhHHhhHH
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS--LPEGVNPFDVAALAK 210 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~--~~~~~d~~~vA~lLK 210 (349)
||+||+.+++++ +..||.+|.+|++||+++|+++|||||++|+..++++|++.||.+.... ..+..|+|+||++||
T Consensus 1 FGv~L~~~~~r~--~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK 78 (196)
T cd04387 1 FGVKISTVTKRE--RSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLK 78 (196)
T ss_pred CCCCHHHHHHhc--CCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHH
Confidence 999999999986 5789999999999999999999999999999999999999999875422 234689999999999
Q ss_pred HHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhhccc
Q 018870 211 YYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEMAP 260 (349)
Q Consensus 211 ~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivFgP 260 (349)
.|||+||+||||+++|+.|+++. .++..++.++.+||+ |+++|||+||||
T Consensus 79 ~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P 158 (196)
T cd04387 79 LYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGP 158 (196)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHcc
Confidence 99999999999999999998873 456778999999998 999999999999
Q ss_pred cccccCCCCh
Q 018870 261 VIMWQKERKP 270 (349)
Q Consensus 261 tLl~~~~~~~ 270 (349)
||+|++..+.
T Consensus 159 ~Llr~~~~~~ 168 (196)
T cd04387 159 TLLRPSEKES 168 (196)
T ss_pred ccCCCCcccc
Confidence 9999987754
No 31
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=99.98 E-value=8.8e-32 Score=243.52 Aligned_cols=125 Identities=25% Similarity=0.405 Sum_probs=113.4
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHHHhcCCCCCCChHH
Q 018870 146 YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFEL 225 (349)
Q Consensus 146 ~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~fLReLPePLl~~~l 225 (349)
.+..||.+|.+|++||+++|+++|||||++|+..++++|++.|+++......+..|+|+||++||.|||+||+||||+++
T Consensus 13 ~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~ 92 (193)
T cd04382 13 TSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFAL 92 (193)
T ss_pred CCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHH
Confidence 46889999999999999999999999999999999999999999887654345579999999999999999999999999
Q ss_pred HHHHHHHH------HHHHHHHHHHHhhhh-----------------------hcccchhhhccccccccCCCCh
Q 018870 226 YDEIKGAR------SSIHAMRNTLKKLSN-----------------------MDARSLAMEMAPVIMWQKERKP 270 (349)
Q Consensus 226 y~~~~~~~------~~i~~l~~ll~~LP~-----------------------M~~~NLAivFgPtLl~~~~~~~ 270 (349)
|+.|+++. ..+..++.++..||. |+++|||+||||+||+.+..++
T Consensus 93 y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~s~~NkM~~~NLAivf~P~L~~~~~~~~ 166 (193)
T cd04382 93 WKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQSPECKMDINNLARVFGPTIVGYSVPNP 166 (193)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCChHHhhhhhhchhcCCCCCCc
Confidence 99999873 456788999999998 9999999999999999887654
No 32
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=99.98 E-value=8.6e-32 Score=242.21 Aligned_cols=133 Identities=29% Similarity=0.499 Sum_probs=120.3
Q ss_pred cCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHH
Q 018870 133 FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYY 212 (349)
Q Consensus 133 FGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~f 212 (349)
||+||+.++.. +..||.+|.+|++||+.+|+++|||||++|+..+++++++.+|++......+.+|+|+||++||+|
T Consensus 1 FG~~L~~~~~~---~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~f 77 (186)
T cd04377 1 FGVSLSSLTSE---DRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQW 77 (186)
T ss_pred CCCCHHHHHhC---CCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHH
Confidence 99999999863 578999999999999999999999999999999999999999998533223568999999999999
Q ss_pred HhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchhhhccccc
Q 018870 213 LASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLAMEMAPVI 262 (349)
Q Consensus 213 LReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPtL 262 (349)
||+||+||+|+++|+.|+.+ .+++..++.++..||+ |+++|||+||||+|
T Consensus 78 lr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~l 157 (186)
T cd04377 78 LRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCI 157 (186)
T ss_pred HHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHh
Confidence 99999999999999999986 2467788999999998 99999999999999
Q ss_pred cccCCC
Q 018870 263 MWQKER 268 (349)
Q Consensus 263 l~~~~~ 268 (349)
+|+++.
T Consensus 158 l~~~~~ 163 (186)
T cd04377 158 LRCPDT 163 (186)
T ss_pred cCCCCC
Confidence 998754
No 33
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=99.97 E-value=2.6e-31 Score=240.85 Aligned_cols=129 Identities=21% Similarity=0.364 Sum_probs=112.4
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCC-CCCCCCCChhhHHhhHHHHHhcC
Q 018870 138 EVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLPEGVNPFDVAALAKYYLASL 216 (349)
Q Consensus 138 ~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~-~~~~~~~d~~~vA~lLK~fLReL 216 (349)
.+|.++..++..+|.+|.+|+++||++|+++|||||++|+.. +.+|++.||.+.. +++ +.+|+|+||++||.|||+|
T Consensus 3 ~~~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~-~~~dv~~va~~LK~ylReL 80 (200)
T cd04388 3 PDLTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDL-EQFDVAALADALKRYLLDL 80 (200)
T ss_pred ccHHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCc-ccccHHHHHHHHHHHHHhC
Confidence 355565556789999999999999999999999999999876 7889999998643 444 5689999999999999999
Q ss_pred CCCCCChHHHHHHHHHH-------HHHHHHHHHHH--hhhh------------------------hcccchhhhcccccc
Q 018870 217 PEPLTTFELYDEIKGAR-------SSIHAMRNTLK--KLSN------------------------MDARSLAMEMAPVIM 263 (349)
Q Consensus 217 PePLl~~~ly~~~~~~~-------~~i~~l~~ll~--~LP~------------------------M~~~NLAivFgPtLl 263 (349)
|+||||+++|+.|+++. +++..++.++. .||. |+++|||+|||||||
T Consensus 81 PePLip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~ 160 (200)
T cd04388 81 PNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLF 160 (200)
T ss_pred CCccCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhc
Confidence 99999999999999873 35677888887 7887 999999999999999
Q ss_pred ccCCC
Q 018870 264 WQKER 268 (349)
Q Consensus 264 ~~~~~ 268 (349)
|++..
T Consensus 161 r~~~~ 165 (200)
T cd04388 161 RFQPA 165 (200)
T ss_pred CCCcc
Confidence 98754
No 34
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.97 E-value=4.8e-31 Score=237.01 Aligned_cols=132 Identities=26% Similarity=0.453 Sum_probs=116.7
Q ss_pred CCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCC-CC-CCCCCChhhHHhhHHH
Q 018870 134 GVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-AS-LPEGVNPFDVAALAKY 211 (349)
Q Consensus 134 Gv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~-~~-~~~~~d~~~vA~lLK~ 211 (349)
|.+|+.... .+..||.+|.+|++||+++|+++|||||++|+...+++|++.|+.+.. .. .....|+|+||++||.
T Consensus 2 ~~~l~~~~~---~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~ 78 (184)
T cd04385 2 GPALEDQQL---TDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKR 78 (184)
T ss_pred CccHHHhhh---CCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHH
Confidence 667766654 368899999999999999999999999999999999999999988642 22 2356899999999999
Q ss_pred HHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhhcccc
Q 018870 212 YLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEMAPV 261 (349)
Q Consensus 212 fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPt 261 (349)
|||+||+||||+++|+.|+.+. .++..++.++..||+ |+++|||+||||+
T Consensus 79 yLreLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ 158 (184)
T cd04385 79 FLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPT 158 (184)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccc
Confidence 9999999999999999999873 467789999999998 9999999999999
Q ss_pred ccccCCC
Q 018870 262 IMWQKER 268 (349)
Q Consensus 262 Ll~~~~~ 268 (349)
|+|+++.
T Consensus 159 ll~~~~~ 165 (184)
T cd04385 159 LFQTDEH 165 (184)
T ss_pred cCCCCcc
Confidence 9998765
No 35
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.96 E-value=1.6e-29 Score=230.34 Aligned_cols=121 Identities=26% Similarity=0.435 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHH-HhcC----CCCCCCC-CCChhhHHhhHHHHHhcCCCCCCC
Q 018870 149 PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSM-YNQD----PNASLPE-GVNPFDVAALAKYYLASLPEPLTT 222 (349)
Q Consensus 149 ~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~-~d~~----~~~~~~~-~~d~~~vA~lLK~fLReLPePLl~ 222 (349)
..+.+|.+|++||+++|+++|||||++|+..+++++++. ++.+ ...++.. .+|+|+||++||+|||+||+||||
T Consensus 27 ~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~ 106 (203)
T cd04374 27 IGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMT 106 (203)
T ss_pred ccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCC
Confidence 345689999999999999999999999999999999875 5654 2233433 579999999999999999999999
Q ss_pred hHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchhhhccccccccCCCC
Q 018870 223 FELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLAMEMAPVIMWQKERK 269 (349)
Q Consensus 223 ~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPtLl~~~~~~ 269 (349)
+++|+.|+++ ..++..++.++..||+ |+++|||+||||+|+|++..+
T Consensus 107 ~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~ 183 (203)
T cd04374 107 YELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET 183 (203)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc
Confidence 9999999987 3467889999999998 999999999999999987654
No 36
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.96 E-value=6.3e-29 Score=248.00 Aligned_cols=188 Identities=24% Similarity=0.369 Sum_probs=149.0
Q ss_pred CCCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCC--CCCCCCChhhH
Q 018870 128 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--SLPEGVNPFDV 205 (349)
Q Consensus 128 ~~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~--~~~~~~d~~~v 205 (349)
+...||||||..++++ ++..||.+|.+.+.||+++||+++||||++|.+.+|+.|++.++...+. ..++....|+|
T Consensus 296 kd~~vFGVPL~vll~r--tG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~Dv 373 (674)
T KOG2200|consen 296 KDGGVFGVPLTVLLQR--TGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDV 373 (674)
T ss_pred CCCceeecCceeeecc--CCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHH
Confidence 3568999999999986 5899999999999999999999999999999999999999999987654 44567899999
Q ss_pred HhhHHHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchh
Q 018870 206 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLA 255 (349)
Q Consensus 206 A~lLK~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLA 255 (349)
|++||+|||+||+||+|.++.+.|+.+ .+++++++.++-.||+ ||+.|||
T Consensus 374 AdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nls 453 (674)
T KOG2200|consen 374 ADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLS 453 (674)
T ss_pred HHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhh
Confidence 999999999999999999999999998 3577888877778877 9999999
Q ss_pred hhccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHh
Q 018870 256 MEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQ 335 (349)
Q Consensus 256 ivFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~ 335 (349)
+||||+||.....-.. ...+...+.. .+......++. + -..+.+++..||.+
T Consensus 454 vcmAPsLF~l~~~~~d-------~spr~~~~k~-~~g~p~~kel~----~----------------a~aaa~~l~~mI~y 505 (674)
T KOG2200|consen 454 VCMAPSLFHLNALKLD-------SSPRVRQKKS-ETGKPDQKELN----E----------------ALAAAQGLAHMIKY 505 (674)
T ss_pred hhhcchHHhhccCCCC-------CCcccccccc-ccCCCchHHHH----H----------------HHHHHHHHHHHHHH
Confidence 9999999986543110 0000011111 11111111222 1 14678999999999
Q ss_pred chhhcCCCcc
Q 018870 336 HNAIFTDANE 345 (349)
Q Consensus 336 ~~~iF~~~~e 345 (349)
++.+|+++.+
T Consensus 506 ~k~Lf~VP~~ 515 (674)
T KOG2200|consen 506 QKLLFTVPSF 515 (674)
T ss_pred HHHHhhchHH
Confidence 9999999865
No 37
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.95 E-value=1.7e-27 Score=219.68 Aligned_cols=140 Identities=21% Similarity=0.358 Sum_probs=124.3
Q ss_pred CCCccCCchHHHHhhhc--------------------CCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHH----HHHH
Q 018870 129 STDVFGVPIEVTVQRQQ--------------------YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKV----IQHL 184 (349)
Q Consensus 129 ~~~vFGv~L~~l~~~~~--------------------~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~----v~~L 184 (349)
...+||.+|+.|..... ....||.+|.+|++||+++|+.+|||||++|+... ++++
T Consensus 9 ~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l 88 (220)
T cd04380 9 LPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEI 88 (220)
T ss_pred ecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHH
Confidence 34799999999886321 24579999999999999999999999999999999 9999
Q ss_pred HHHHhcCCCCCCCCCCChhhHHhhHHHHHhcCCCCCCChHHHHHHHHH-HHHHHHHHHHHH-hhhh--------------
Q 018870 185 VSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-RSSIHAMRNTLK-KLSN-------------- 248 (349)
Q Consensus 185 ~~~~d~~~~~~~~~~~d~~~vA~lLK~fLReLPePLl~~~ly~~~~~~-~~~i~~l~~ll~-~LP~-------------- 248 (349)
++.+|++.... ...++|+||++||.|||+||+||||+++|+.|+++ ......++++++ .||+
T Consensus 89 ~~~ld~~~~~~--~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~~~~~~~ll~~~LP~~n~~~l~~L~~fL~ 166 (220)
T cd04380 89 RDALDTGSPFN--SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRISLPPVHRNVFVYLCSFLR 166 (220)
T ss_pred HHHHhCCCCCC--CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCcHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 99999987654 56899999999999999999999999999999998 355667888888 9998
Q ss_pred ----------hcccchhhhccccccccCCCCh
Q 018870 249 ----------MDARSLAMEMAPVIMWQKERKP 270 (349)
Q Consensus 249 ----------M~~~NLAivFgPtLl~~~~~~~ 270 (349)
|+++|||+||||+|+|++..++
T Consensus 167 ~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~~ 198 (220)
T cd04380 167 ELLSESADRGLDENTLATIFGRVLLRDPPRAG 198 (220)
T ss_pred HHHHHHHhhCCCHHHhHHHhcchhccCCcccc
Confidence 9999999999999999988764
No 38
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=99.94 E-value=1.4e-27 Score=251.94 Aligned_cols=167 Identities=25% Similarity=0.343 Sum_probs=143.2
Q ss_pred CccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCC---CC--CCCCCChhhH
Q 018870 131 DVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN---AS--LPEGVNPFDV 205 (349)
Q Consensus 131 ~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~---~~--~~~~~d~~~v 205 (349)
++|||+|.+..... ...-||.||..|+..+|.+||++.||||+|||...|..|++.+|++.. ++ ...+.|+++|
T Consensus 1156 ~~~GVrl~dCP~~~-~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVV 1234 (1973)
T KOG4407|consen 1156 PVLGVRLADCPTGS-CNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVV 1234 (1973)
T ss_pred cccccccccCCccc-ccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHH
Confidence 59999998865432 467899999999999999999999999999999999999999998742 22 2236799999
Q ss_pred HhhHHHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchh
Q 018870 206 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLA 255 (349)
Q Consensus 206 A~lLK~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLA 255 (349)
.+|||.|||.|||||+|.++|..||++ .+++..|+++|++||. |-+.|||
T Consensus 1235 SSLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLA 1314 (1973)
T KOG4407|consen 1235 SSLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLA 1314 (1973)
T ss_pred HHHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccccccccccccee
Confidence 999999999999999999999999999 3678999999999998 9999999
Q ss_pred hhccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHh
Q 018870 256 MEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQ 335 (349)
Q Consensus 256 ivFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~ 335 (349)
|+|||+|+|+++++...+ + . +| ..++.|||.||.|
T Consensus 1315 i~FGPsiVRts~Dnm~tm--------------V--------t-------------------hM----~dQckIVEtLI~~ 1349 (1973)
T KOG4407|consen 1315 IMFGPSIVRTSDDNMATM--------------V--------T-------------------HM----SDQCKIVETLIHY 1349 (1973)
T ss_pred EEeccceeccCCccHHHH--------------h--------h-------------------cc----hhhhhHHHHHHhh
Confidence 999999999988764311 0 0 11 2468899999999
Q ss_pred chhhcCCC
Q 018870 336 HNAIFTDA 343 (349)
Q Consensus 336 ~~~iF~~~ 343 (349)
|+-+|+..
T Consensus 1350 ~dwfF~es 1357 (1973)
T KOG4407|consen 1350 NDWFFDES 1357 (1973)
T ss_pred hhheeccC
Confidence 99999874
No 39
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.94 E-value=3.1e-26 Score=202.71 Aligned_cols=122 Identities=31% Similarity=0.603 Sum_probs=111.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCC-CCCCCChhhHHhhHHHHHhcCCCCCCChHHHH
Q 018870 149 PVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNPFDVAALAKYYLASLPEPLTTFELYD 227 (349)
Q Consensus 149 ~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~-~~~~~d~~~vA~lLK~fLReLPePLl~~~ly~ 227 (349)
.||.+|..|++||+++|+++|||||++|+..+++++++.++.+...+ .....|+|++|++||.|||+||+||+|.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 59999999999999999999999999999999999999999998765 34679999999999999999999999999999
Q ss_pred HHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhhccccccccCCCCh
Q 018870 228 EIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEMAPVIMWQKERKP 270 (349)
Q Consensus 228 ~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPtLl~~~~~~~ 270 (349)
.|+++. +++..++.++.+||. |+++|||+||||+|++++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~ 154 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV 154 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH
Confidence 999874 347788999999998 9999999999999999987653
No 40
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.94 E-value=3.2e-27 Score=255.48 Aligned_cols=188 Identities=21% Similarity=0.352 Sum_probs=163.4
Q ss_pred hhhhhhhhcc-----ccccccchhccchhhhHHHHHhhhcchhhHHhHHhhhcCCCCCCccCCchHHHHhhhcCCCCCCH
Q 018870 78 AITGMFLRRG-----FSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPH 152 (349)
Q Consensus 78 ~~t~~~lrk~-----~~~~~~~i~~~~~~~ee~~~~~~~k~~~~~~~~~~~~~~~~~~~vFGv~L~~l~~~~~~~~~VP~ 152 (349)
+.+|.+ |+. |..|..++++.+..|++|...||++|.......+...+. .....||+.|..++..+ +..||.
T Consensus 545 ~~~~~~-r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l-~~~~~fG~~l~~~~~~e--~~~vP~ 620 (918)
T KOG1453|consen 545 ALKHYL-RSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERL-PGRPLFGVSLSELARYE--PSTVPF 620 (918)
T ss_pred cchhhh-hcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccc-cccccccHHHHHhhccC--CCCCCH
Confidence 556666 444 789999999999999999999999999766444333322 22239999999999875 688999
Q ss_pred HHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHHHhcCCCCCCChHHHHHHHHH
Q 018870 153 ILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA 232 (349)
Q Consensus 153 ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~fLReLPePLl~~~ly~~~~~~ 232 (349)
++.+|+.||+.+|+.+|||||++|...+++.|...|+++.......+.|+|++++++|+|||+||+|||++.+|+.|+.+
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yLr~Lp~pIi~f~~y~~~~~~ 700 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYLRKLPEPIIIFNLYDEFLSA 700 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHHHhccccccccchHHHHHhh
Confidence 99999999999999999999999999999999999999886666678999999999999999999999999999999998
Q ss_pred H------H------HHHHHHHHHHhhhh------------------------hcccchhhhccccccccCCCC
Q 018870 233 R------S------SIHAMRNTLKKLSN------------------------MDARSLAMEMAPVIMWQKERK 269 (349)
Q Consensus 233 ~------~------~i~~l~~ll~~LP~------------------------M~~~NLAivFgPtLl~~~~~~ 269 (349)
. . .+..+.+++..||. |+..|||+||||||+|+++..
T Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlaivF~Ptllr~~d~~ 773 (918)
T KOG1453|consen 701 AKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAIVFAPTLLRPPDGT 773 (918)
T ss_pred hccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccccccCcccCCCCCc
Confidence 3 2 57788999999998 999999999999999998864
No 41
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.93 E-value=6.7e-27 Score=241.27 Aligned_cols=139 Identities=25% Similarity=0.492 Sum_probs=119.3
Q ss_pred CCCCccCCchH----HHHhhhcCCCCCCHHHHHHHHHHH-hcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCC---CCCC
Q 018870 128 ASTDVFGVPIE----VTVQRQQYGKPVPHILVKCADYLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS---LPEG 199 (349)
Q Consensus 128 ~~~~vFGv~L~----~l~~~~~~~~~VP~ii~~ci~~Le-~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~---~~~~ 199 (349)
...++||.++. ...+++ -..+|.||.+|++||| .+|+++|||||++|+...|+.|++.||.+-+.+ ..++
T Consensus 895 ~qTgIFG~~~~~kisv~t~~n--~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E 972 (1112)
T KOG4269|consen 895 KQTGIFGLPLNVKISVVTKRN--VSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSE 972 (1112)
T ss_pred eeceeccccceeeEeeeeeec--ccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccc
Confidence 35689996543 333343 4679999999999999 889999999999999999999999999884333 2347
Q ss_pred CChhhHHhhHHHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------h
Q 018870 200 VNPFDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------M 249 (349)
Q Consensus 200 ~d~~~vA~lLK~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M 249 (349)
.|+|+|||+||+|||+||+|||+.++|..|... .+...+++++|..||+ |
T Consensus 973 ~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKM 1052 (1112)
T KOG4269|consen 973 MDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKM 1052 (1112)
T ss_pred ccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccc
Confidence 899999999999999999999999999999886 3567788999999998 9
Q ss_pred cccchhhhccccccccCCC
Q 018870 250 DARSLAMEMAPVIMWQKER 268 (349)
Q Consensus 250 ~~~NLAivFgPtLl~~~~~ 268 (349)
+.+||+|||+|||.+|.+.
T Consensus 1053 nlrNlciVFsPTLniPse~ 1071 (1112)
T KOG4269|consen 1053 NLRNLCIVFSPTLNIPSEI 1071 (1112)
T ss_pred cccceeeeecccccCcHHh
Confidence 9999999999999998653
No 42
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.93 E-value=8.5e-26 Score=230.78 Aligned_cols=138 Identities=22% Similarity=0.400 Sum_probs=125.0
Q ss_pred CCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCC--CCChhhHH
Q 018870 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE--GVNPFDVA 206 (349)
Q Consensus 129 ~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~--~~d~~~vA 206 (349)
..++||++|+.+|+++ +..||.+|..|++.|+.+|++.+||||++|+...|++|+..+|.+...++.+ +.|+|+|+
T Consensus 453 ~~~vFGs~Lealc~rE--~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dihai~ 530 (650)
T KOG1450|consen 453 FDKVFGSPLEALCQRE--NGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIHAIT 530 (650)
T ss_pred cCcccCccHHHHhhcc--CCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHHHHH
Confidence 4789999999999997 6889999999999999999999999999999999999999999777666544 47999999
Q ss_pred hhHHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhh
Q 018870 207 ALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAM 256 (349)
Q Consensus 207 ~lLK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAi 256 (349)
++||.||||||+||++..++.+|..+. .+....++++..||+ |+.+||||
T Consensus 531 galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLaI 610 (650)
T KOG1450|consen 531 GALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLAI 610 (650)
T ss_pred HHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceEE
Confidence 999999999999999999999999883 356677788888887 99999999
Q ss_pred hccccccccCCC
Q 018870 257 EMAPVIMWQKER 268 (349)
Q Consensus 257 vFgPtLl~~~~~ 268 (349)
||||+|+.+-+.
T Consensus 611 VfgpTl~~~~~~ 622 (650)
T KOG1450|consen 611 VFGPTLIKPEQE 622 (650)
T ss_pred Eecccccccccc
Confidence 999999996654
No 43
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=99.93 E-value=3.7e-26 Score=227.68 Aligned_cols=149 Identities=27% Similarity=0.414 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCC-----CCCCCCCCChhhHHhhHHHHHhcCCCCCCChHHH
Q 018870 152 HILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-----NASLPEGVNPFDVAALAKYYLASLPEPLTTFELY 226 (349)
Q Consensus 152 ~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~-----~~~~~~~~d~~~vA~lLK~fLReLPePLl~~~ly 226 (349)
.+|.+||+.||..|++++|+||..|...+|++|...+-... +.+..+.+|+-+|++.||.|||.|||||++|+++
T Consensus 390 ~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LH 469 (812)
T KOG1451|consen 390 EFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELH 469 (812)
T ss_pred HHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHH
Confidence 47999999999999999999999999999999887663222 1223356899999999999999999999999999
Q ss_pred HHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhhccccccccCCCChhHHhhh
Q 018870 227 DEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEMAPVIMWQKERKPEFYRQY 276 (349)
Q Consensus 227 ~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPtLl~~~~~~~~~~~~~ 276 (349)
..|+.++ -++..++.++.+||+ |+..|||+||||||||+++++.
T Consensus 470 k~FI~AAKsdnq~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETV------ 543 (812)
T KOG1451|consen 470 KVFINAAKSDNQTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETV------ 543 (812)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHH------
Confidence 9999984 378999999999998 9999999999999999988754
Q ss_pred hhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHhchhhcCCCccc
Q 018870 277 WNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANET 346 (349)
Q Consensus 277 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~~~~iF~~~~e~ 346 (349)
++||++.|..| |||.|||||+.||..+.+.
T Consensus 544 ---------------------------------------AAiMdIKFQNI-VVEILIEnyeKIF~t~Pd~ 573 (812)
T KOG1451|consen 544 ---------------------------------------AAIMDIKFQNI-VVEILIENYEKIFKTKPDS 573 (812)
T ss_pred ---------------------------------------HHHHcchhhhh-hHHHHHhhhHHHhcCCCCc
Confidence 35777788888 9999999999999987654
No 44
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.92 E-value=1e-24 Score=190.81 Aligned_cols=119 Identities=36% Similarity=0.609 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHHHhcCCCCCCChHHHHHHH
Q 018870 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIK 230 (349)
Q Consensus 151 P~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~fLReLPePLl~~~ly~~~~ 230 (349)
|.+|..|++||+++|+.++||||++|+..++++|++.++.+.........|+|++|++||.|||+||+||+|.++|+.|+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999876444578999999999999999999999999999999
Q ss_pred HHH------HHHHHHHHHHHhhhh------------------------hcccchhhhccccccccCCCC
Q 018870 231 GAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEMAPVIMWQKERK 269 (349)
Q Consensus 231 ~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPtLl~~~~~~ 269 (349)
.+. ..+..++.++..||+ |+++|||+||||+|++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~ 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc
Confidence 984 477888999999998 999999999999999987654
No 45
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.91 E-value=1.3e-24 Score=187.49 Aligned_cols=118 Identities=35% Similarity=0.547 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCC-CCCCCChhhHHhhHHHHHhcCCCCCCChHHHHHH
Q 018870 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNAS-LPEGVNPFDVAALAKYYLASLPEPLTTFELYDEI 229 (349)
Q Consensus 151 P~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~-~~~~~d~~~vA~lLK~fLReLPePLl~~~ly~~~ 229 (349)
|.+|..|++||+++|+.++||||++|+..++++|++.++.+.... ..+.+|+|+||++||.||++||+||++.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 889999999999999999999999999999999999999998664 4567999999999999999999999999999999
Q ss_pred HHH------HHHHHHHHHHHHhhhh------------------------hcccchhhhccccccccCCC
Q 018870 230 KGA------RSSIHAMRNTLKKLSN------------------------MDARSLAMEMAPVIMWQKER 268 (349)
Q Consensus 230 ~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPtLl~~~~~ 268 (349)
+.+ .+++..++.++..||. |+++|||+||||+|++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred hhhhccchhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 965 3567888888888887 99999999999999998764
No 46
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.91 E-value=1.3e-24 Score=212.75 Aligned_cols=188 Identities=19% Similarity=0.263 Sum_probs=151.5
Q ss_pred hhhhhhcc------ccccccchhccc--hhhhHHHHHhhhcchhhHHhHHhhhc-CCCCCCccCCchHHHHhhhcCCCCC
Q 018870 80 TGMFLRRG------FSETKDKVAVGK--IKVEEAAKKTAQKSKTILTDIERWQK-GVASTDVFGVPIEVTVQRQQYGKPV 150 (349)
Q Consensus 80 t~~~lrk~------~~~~~~~i~~~~--~~~ee~~~~~~~k~~~~~~~~~~~~~-~~~~~~vFGv~L~~l~~~~~~~~~V 150 (349)
.|.|+.|+ |..|..+|.|+. ++|.+|-..||..|...+..-|--+- +...+.--| -|.+.+.+ ....|
T Consensus 286 ~htfi~kt~~~~~~Cv~C~krIkfg~~sLkCRdC~v~~H~~Cr~~l~lpCIP~l~g~~~k~geg-~L~DF~~s--~aPMI 362 (604)
T KOG3564|consen 286 LHTFISKTVIKPENCVPCGKRIKFGKLSLKCRDCPVVCHIECRDKLTLPCIPTLIGPPVKTGEG-MLADFAPS--TAPMI 362 (604)
T ss_pred cchhhHhhccCcccchhhhhhhhhhhcccccccCCeeechhHHhcCCCCCcCccCCCCCccCce-ehhhhccc--ccccc
Confidence 35666665 788999999987 69999999999999876643221111 111111111 24555543 35789
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHHHhcCCCCCCChHHHHHHH
Q 018870 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIK 230 (349)
Q Consensus 151 P~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~fLReLPePLl~~~ly~~~~ 230 (349)
|.+|..|+.+||++||..+||||++|....+++|++.|-++.........|+|++|++||.|||+|.+||||+.+..+|+
T Consensus 363 PalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~rdf~ 442 (604)
T KOG3564|consen 363 PALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRRDFM 442 (604)
T ss_pred hHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999876555678999999999999999999999999999999
Q ss_pred HHH------HHHHHHHHHHHhhhh-----------------------hcccchhhhccccccccCCCCh
Q 018870 231 GAR------SSIHAMRNTLKKLSN-----------------------MDARSLAMEMAPVIMWQKERKP 270 (349)
Q Consensus 231 ~~~------~~i~~l~~ll~~LP~-----------------------M~~~NLAivFgPtLl~~~~~~~ 270 (349)
.+. ..+..+...+..||. |+..|||.+|||+|+..+-.+|
T Consensus 443 eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQsp~~kM~v~nlA~ifgPtivgh~vp~p 511 (604)
T KOG3564|consen 443 EAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQSPRVKMNVANLARIFGPTIVGHAVPNP 511 (604)
T ss_pred HHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHhCCcccccHHHHHHHhcchhhccCCCCc
Confidence 984 346677888888887 9999999999999999655544
No 47
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.91 E-value=2.2e-24 Score=219.64 Aligned_cols=138 Identities=32% Similarity=0.492 Sum_probs=121.0
Q ss_pred CCCccCCchHHHHhhhc-CCCCCCHHHHHHHH-HHH-hcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhH
Q 018870 129 STDVFGVPIEVTVQRQQ-YGKPVPHILVKCAD-YLV-LSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV 205 (349)
Q Consensus 129 ~~~vFGv~L~~l~~~~~-~~~~VP~ii~~ci~-~Le-~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~v 205 (349)
...+|||++..+..... .+..||.++..+.+ +++ ++|++.|||||++|....++.||+.+|.|..+... ..|+|++
T Consensus 143 ~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~-~iDvH~~ 221 (577)
T KOG4270|consen 143 SETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQL-YIDVHCL 221 (577)
T ss_pred hhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccc-cCCHHHH
Confidence 56799999988755432 24448999999988 666 67899999999999999999999999999876654 6899999
Q ss_pred HhhHHHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchh
Q 018870 206 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLA 255 (349)
Q Consensus 206 A~lLK~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLA 255 (349)
|++||.||||||+|++++++|++|+.+ .++...++.++.+||+ |+++|||
T Consensus 222 agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlA 301 (577)
T KOG4270|consen 222 AGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLA 301 (577)
T ss_pred HHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhce
Confidence 999999999999999999999999977 3567888889999998 9999999
Q ss_pred hhccccccccCC
Q 018870 256 MEMAPVIMWQKE 267 (349)
Q Consensus 256 ivFgPtLl~~~~ 267 (349)
+||||+|+|+.+
T Consensus 302 iV~gPNl~~~~~ 313 (577)
T KOG4270|consen 302 IVFGPNLLWMKD 313 (577)
T ss_pred eEecCCccccCC
Confidence 999999999887
No 48
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.90 E-value=8.3e-24 Score=208.05 Aligned_cols=120 Identities=28% Similarity=0.516 Sum_probs=109.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCC----CCCCCCCCChhhHHhhHHHHHhcCCCCCCC
Q 018870 147 GKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP----NASLPEGVNPFDVAALAKYYLASLPEPLTT 222 (349)
Q Consensus 147 ~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~----~~~~~~~~d~~~vA~lLK~fLReLPePLl~ 222 (349)
-..||.+|.+|..||.++|+++.||||++|+..++++|++.|+.+. +...++++++|+||++||.|||+||+||||
T Consensus 91 ~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP 170 (412)
T KOG2710|consen 91 EGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLP 170 (412)
T ss_pred ceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCC
Confidence 3679999999999999999999999999999999999999999984 455667899999999999999999999999
Q ss_pred hHHHHHHHHH-----H-HHHHHHHHHHHhhhh-----------------------------------hcccchhhhcccc
Q 018870 223 FELYDEIKGA-----R-SSIHAMRNTLKKLSN-----------------------------------MDARSLAMEMAPV 261 (349)
Q Consensus 223 ~~ly~~~~~~-----~-~~i~~l~~ll~~LP~-----------------------------------M~~~NLAivFgPt 261 (349)
.++|+.|+.. . +++..++.++..||. |+++|||+||+|+
T Consensus 171 ~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~ 250 (412)
T KOG2710|consen 171 LELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPN 250 (412)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcch
Confidence 9999999987 2 567778888888887 9999999999999
Q ss_pred ccccC
Q 018870 262 IMWQK 266 (349)
Q Consensus 262 Ll~~~ 266 (349)
|++..
T Consensus 251 iL~k~ 255 (412)
T KOG2710|consen 251 ILYKL 255 (412)
T ss_pred hhhcc
Confidence 99953
No 49
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.90 E-value=2.6e-24 Score=208.40 Aligned_cols=141 Identities=28% Similarity=0.539 Sum_probs=123.4
Q ss_pred CCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcC-CCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHh
Q 018870 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSG-LNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA 207 (349)
Q Consensus 129 ~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~g-l~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~ 207 (349)
.++.||++|..+.+....+..+|.+|..|+.+|..+| +++||+||.+++.+.+.++.+.+|+|..+++...-|+|..|.
T Consensus 250 ~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~h~~av 329 (467)
T KOG4406|consen 250 PTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDLHAPAV 329 (467)
T ss_pred chhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccchhhHH
Confidence 5689999999998866457889999999999999999 999999999999999999999999999988865556999999
Q ss_pred hHHHHHhcCCCCCCChHHHHHHHHH-----HHHHHHHHHHHHh-hhh------------------------hcccchhhh
Q 018870 208 LAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKK-LSN------------------------MDARSLAME 257 (349)
Q Consensus 208 lLK~fLReLPePLl~~~ly~~~~~~-----~~~i~~l~~ll~~-LP~------------------------M~~~NLAiv 257 (349)
+||.|||+||+||+++++|+.+... ..+.....++++. ||+ ||+.|||+|
T Consensus 330 llKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa~v 409 (467)
T KOG4406|consen 330 LLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLAVV 409 (467)
T ss_pred HHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccceee
Confidence 9999999999999999999988665 2344555666665 665 999999999
Q ss_pred ccccccccCCCC
Q 018870 258 MAPVIMWQKERK 269 (349)
Q Consensus 258 FgPtLl~~~~~~ 269 (349)
|||+|+|+....
T Consensus 410 fGpnl~w~~~~s 421 (467)
T KOG4406|consen 410 FGPNLLWAQDES 421 (467)
T ss_pred eccccccccccc
Confidence 999999988653
No 50
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.89 E-value=3.6e-23 Score=213.08 Aligned_cols=149 Identities=23% Similarity=0.375 Sum_probs=133.4
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCC-CC-CCCCChhhHHhhHHHHHhcCCCCCCCh
Q 018870 146 YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SL-PEGVNPFDVAALAKYYLASLPEPLTTF 223 (349)
Q Consensus 146 ~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~-~~-~~~~d~~~vA~lLK~fLReLPePLl~~ 223 (349)
++..||.||.+||.|+.++||..|||||++|...++..|.+.|-.+... .+ ..+..+.+|+++||+|||+|++||+|.
T Consensus 723 s~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~ 802 (1186)
T KOG1117|consen 723 SKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTK 802 (1186)
T ss_pred cCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccch
Confidence 5788999999999999999999999999999999999999999887752 22 235789999999999999999999999
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchhhhccccccccCCCChhHH
Q 018870 224 ELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLAMEMAPVIMWQKERKPEFY 273 (349)
Q Consensus 224 ~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPtLl~~~~~~~~~~ 273 (349)
++|..|+++ .+++....++|..||. |+++|||+||||+||.....+
T Consensus 803 ~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgqd---- 878 (1186)
T KOG1117|consen 803 ELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQD---- 878 (1186)
T ss_pred hhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCCc----
Confidence 999999998 3578888899999987 999999999999999876543
Q ss_pred hhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHhchhhcCCCcccc
Q 018870 274 RQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETV 347 (349)
Q Consensus 274 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~~~~iF~~~~e~~ 347 (349)
...++|++.||++|..+|.+..|.|
T Consensus 879 -------------------------------------------------ehevnVledLingYvvVF~v~eeev 903 (1186)
T KOG1117|consen 879 -------------------------------------------------EHEVNVLEDLINGYVVVFEVDEEEV 903 (1186)
T ss_pred -------------------------------------------------hhhhhHHHHHhcCceEEEEecHHHH
Confidence 2568999999999999999998875
No 51
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.68 E-value=1.8e-16 Score=149.31 Aligned_cols=138 Identities=20% Similarity=0.247 Sum_probs=111.1
Q ss_pred CCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCC-CCC--CCCChhhH
Q 018870 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA-SLP--EGVNPFDV 205 (349)
Q Consensus 129 ~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~-~~~--~~~d~~~v 205 (349)
-.++||.+|+.+++++ ...-|+++.+|+++||++|++.-|+|+++|+..+-+-|++.|+..... .+- .--|.++|
T Consensus 181 lrgvfG~~L~~lV~RE--~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvI 258 (442)
T KOG1452|consen 181 LRGVFGISLSRLVQRE--PESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVI 258 (442)
T ss_pred cccccchhhHhHhhcC--CCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCccee
Confidence 4569999999999987 577899999999999999999999999999999999999999876543 221 13688999
Q ss_pred HhhHHHHHhcCCCCCCChHHHHHHHHHHH---------HHHHHHHHHHhhhh------------------------hccc
Q 018870 206 AALAKYYLASLPEPLTTFELYDEIKGARS---------SIHAMRNTLKKLSN------------------------MDAR 252 (349)
Q Consensus 206 A~lLK~fLReLPePLl~~~ly~~~~~~~~---------~i~~l~~ll~~LP~------------------------M~~~ 252 (349)
++++|.|||||||||++...|+...++.. ....+..+|.-|+. |++.
T Consensus 259 tg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~ 338 (442)
T KOG1452|consen 259 TGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPT 338 (442)
T ss_pred ecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHH
Confidence 99999999999999999988887777621 11222222222222 9999
Q ss_pred chhhhccccccccCCC
Q 018870 253 SLAMEMAPVIMWQKER 268 (349)
Q Consensus 253 NLAivFgPtLl~~~~~ 268 (349)
.||.||||.||.+.+.
T Consensus 339 ~Ls~i~~P~L~~~~~t 354 (442)
T KOG1452|consen 339 RLSLIFAPLLFFCLDT 354 (442)
T ss_pred HHHHHhhhhHHHhhcc
Confidence 9999999999987654
No 52
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.58 E-value=1.8e-15 Score=153.65 Aligned_cols=137 Identities=18% Similarity=0.218 Sum_probs=123.6
Q ss_pred CCCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHh
Q 018870 128 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA 207 (349)
Q Consensus 128 ~~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~ 207 (349)
....+||.||..+|... .+|..+..+.-++-..|.-++||||...+...+++|++.++.|-++.+ +...++++|.
T Consensus 78 ~~~~Lfg~pl~nic~~~----~lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l-~~~~i~v~a~ 152 (741)
T KOG4724|consen 78 ADSFLFGWPLTNICVHF----RLPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGL-KSGEIVVDAA 152 (741)
T ss_pred CCccccCccchhhcccC----CCCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccc-cccceEEeeh
Confidence 36689999999999853 399999999999999999999999999999999999999999987776 4578999999
Q ss_pred hHHHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh-----------------------hcccchhhhc
Q 018870 208 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN-----------------------MDARSLAMEM 258 (349)
Q Consensus 208 lLK~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~-----------------------M~~~NLAivF 258 (349)
++|.|||.+|.-++.+++|+.|+.. .++|..++++..+||. |+..|||+|.
T Consensus 153 v~kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl~i~~~S~~n~m~~~nla~cv 232 (741)
T KOG4724|consen 153 VDKDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQGDRLPRSNKQLLDTLPIVLCILILSTINSMSGPNLAQCV 232 (741)
T ss_pred hhhchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHHhhCCchHHHHHHHhHHHHHHHHhhhhccccCccHHHHh
Confidence 9999999999999999999999877 4678888888888887 9999999999
Q ss_pred cccccccCCCC
Q 018870 259 APVIMWQKERK 269 (349)
Q Consensus 259 gPtLl~~~~~~ 269 (349)
+|++++....+
T Consensus 233 ~p~~l~~~~~~ 243 (741)
T KOG4724|consen 233 NPIKLKVLTRT 243 (741)
T ss_pred cchhccccccc
Confidence 99999976653
No 53
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.57 E-value=9.9e-16 Score=159.99 Aligned_cols=131 Identities=27% Similarity=0.492 Sum_probs=115.1
Q ss_pred CCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCC-CCChhhHHhh
Q 018870 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFDVAAL 208 (349)
Q Consensus 130 ~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~-~~d~~~vA~l 208 (349)
...||++|..++.. ...+|..+.+|++||++.|+.+|||||++|++.....++..|.++...++.+ +..+|+||+.
T Consensus 915 s~~~~~~l~~~~t~---~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagA 991 (1100)
T KOG4271|consen 915 SNYFLTPLQDAVTS---EKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGA 991 (1100)
T ss_pred hhccCCcccccccC---CcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCc
Confidence 46899999888764 5789999999999999999999999999999999999999999977766543 6789999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchhhhc
Q 018870 209 AKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLAMEM 258 (349)
Q Consensus 209 LK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLAivF 258 (349)
+|.||..||+||+|+.++..+.++. .++..+++.+..||+ |+..||+|||
T Consensus 992 lksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~ 1071 (1100)
T KOG4271|consen 992 LKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICF 1071 (1100)
T ss_pred chhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccccccccc
Confidence 9999999999999999988888773 345556677777766 9999999999
Q ss_pred ccccc
Q 018870 259 APVIM 263 (349)
Q Consensus 259 gPtLl 263 (349)
+|.|+
T Consensus 1072 ~~~~~ 1076 (1100)
T KOG4271|consen 1072 PTLLM 1076 (1100)
T ss_pred cchHH
Confidence 99887
No 54
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.41 E-value=1.4e-12 Score=119.85 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=119.6
Q ss_pred CccCCchHHHHhhhcCCCCCCHHHHHHH--HHHHhcCCCC--CCeeeccCCHHHHHHHHHHHhcCCCCCCCC-CCC-h--
Q 018870 131 DVFGVPIEVTVQRQQYGKPVPHILVKCA--DYLVLSGLNS--QFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVN-P-- 202 (349)
Q Consensus 131 ~vFGv~L~~l~~~~~~~~~VP~ii~~ci--~~Le~~gl~~--eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~-~~d-~-- 202 (349)
++||+|+-+-+.+ ++...|..+..-. +++..+.++. -|+||+++....+...++.++.-++....+ ... +
T Consensus 20 ~l~glp~Ld~vl~--~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~ 97 (235)
T cd04405 20 QLVGLPLLEELLD--PALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQ 97 (235)
T ss_pred HHcCCccHHHHhc--ccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccc
Confidence 5899997665554 3566777776555 5555555544 699999999999999999998876531111 112 2
Q ss_pred --------hhHHhhHHHHHhcCCCCCCChHHHHHHHHHH---------HHHHHHHHHHHhhhh-----------------
Q 018870 203 --------FDVAALAKYYLASLPEPLTTFELYDEIKGAR---------SSIHAMRNTLKKLSN----------------- 248 (349)
Q Consensus 203 --------~~vA~lLK~fLReLPePLl~~~ly~~~~~~~---------~~i~~l~~ll~~LP~----------------- 248 (349)
.+|+.++++||++|||||+|..+|+.|..+. ..+++++-++-.||+
T Consensus 98 ~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va 177 (235)
T cd04405 98 HDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAA 177 (235)
T ss_pred cccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 2899999999999999999999999888773 356667777777776
Q ss_pred ------h-----cccchhhhccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCC
Q 018870 249 ------M-----DARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDD 317 (349)
Q Consensus 249 ------M-----~~~NLAivFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 317 (349)
| |-.|++..|+|+++++++-+.
T Consensus 178 ~~~~~~L~~~~~nR~~v~~~Fs~~ii~~~~l~~----------------------------------------------- 210 (235)
T cd04405 178 KNDMPRLHKEIENRMLVKQTFSRAILCSKDLDE----------------------------------------------- 210 (235)
T ss_pred hcCccccccccchHHHHHHHhhhHhcCccccCH-----------------------------------------------
Confidence 1 122899999999999884431
Q ss_pred CCCCcchhHHHHHHHHHhchhhcCCCcc
Q 018870 318 GMPIDFGAIEVVQCLMEQHNAIFTDANE 345 (349)
Q Consensus 318 ~~~~~~~~i~vV~~LIe~~~~iF~~~~e 345 (349)
..+..+|-+||+|+.+||.++..
T Consensus 211 -----~~~~~LV~Fmmd~~~~ifkvP~~ 233 (235)
T cd04405 211 -----GLADLLVLFLMDHHQDIFKVPGS 233 (235)
T ss_pred -----HHHHHHHHHHHHcchhhhcCCcc
Confidence 13457999999999999999853
No 55
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.29 E-value=1.3e-11 Score=111.97 Aligned_cols=119 Identities=20% Similarity=0.315 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCe---eeccCCHHHHHHH-HHHHhcCCCCCC--------CCCCChhhHHhhHHHHHhcCC
Q 018870 150 VPHILVKCADYLVLSGLNSQFL---FKAEGDKKVIQHL-VSMYNQDPNASL--------PEGVNPFDVAALAKYYLASLP 217 (349)
Q Consensus 150 VP~ii~~ci~~Le~~gl~~eGI---FR~~G~~~~v~~L-~~~~d~~~~~~~--------~~~~d~~~vA~lLK~fLReLP 217 (349)
|=.+|..|.++|+.+|+++++| ||.+++...++.+ +..|+.+..... ....|+|+++++||.|+|.||
T Consensus 6 v~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP 85 (198)
T cd04401 6 VKGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLP 85 (198)
T ss_pred HHHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCC
Confidence 3457899999999999999999 9999999999887 666676532111 124799999999999999999
Q ss_pred CCCCCh-HHHHHHHHHHH----HHHHHHHHHHhh--hh------------------------hcccchhhhccccccccC
Q 018870 218 EPLTTF-ELYDEIKGARS----SIHAMRNTLKKL--SN------------------------MDARSLAMEMAPVIMWQK 266 (349)
Q Consensus 218 ePLl~~-~ly~~~~~~~~----~i~~l~~ll~~L--P~------------------------M~~~NLAivFgPtLl~~~ 266 (349)
+++++. +.|..|....+ .-...+.++..+ |+ |+..||+.+|||.+|..+
T Consensus 86 ~~~v~~~~~Y~~F~~~E~~~~~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 86 GSKVIWWEVYEEFKARERRSNYPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred CCccCCHHHHHHHHHHHHhcCCcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 999999 99999998742 133455555555 22 999999999999999977
Q ss_pred CC
Q 018870 267 ER 268 (349)
Q Consensus 267 ~~ 268 (349)
..
T Consensus 166 ~~ 167 (198)
T cd04401 166 TG 167 (198)
T ss_pred Cc
Confidence 65
No 56
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=98.87 E-value=1.8e-09 Score=113.15 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=98.7
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCeee-ccCCHHHHHHHHHHHhcCCCCCC-CCCCChhhHHhhHHHHHhcCCCC-CCC
Q 018870 146 YGKPVPHILVKCADYLVLSGLNSQFLFK-AEGDKKVIQHLVSMYNQDPNASL-PEGVNPFDVAALAKYYLASLPEP-LTT 222 (349)
Q Consensus 146 ~~~~VP~ii~~ci~~Le~~gl~~eGIFR-~~G~~~~v~~L~~~~d~~~~~~~-~~~~d~~~vA~lLK~fLReLPeP-Ll~ 222 (349)
++..||.++..|+.+++.+|+..+|||| ++|....+..++.++.++..... ..+.+... |.++|.|+|.|.+| .|+
T Consensus 214 ~~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~ 292 (640)
T KOG3565|consen 214 YFQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFP 292 (640)
T ss_pred CcccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCc
Confidence 4688999999999999999999999999 99999999999999998843322 22344555 99999999999999 999
Q ss_pred hHHHHHHHHHHH------HHHHHHHHHHhhhh------------------------hcccchhhhccccccccCC
Q 018870 223 FELYDEIKGARS------SIHAMRNTLKKLSN------------------------MDARSLAMEMAPVIMWQKE 267 (349)
Q Consensus 223 ~~ly~~~~~~~~------~i~~l~~ll~~LP~------------------------M~~~NLAivFgPtLl~~~~ 267 (349)
++.+..++++.. ....++.++..+|. |++.|+++||||+++-.+.
T Consensus 293 ~e~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e 367 (640)
T KOG3565|consen 293 FEDFGQPHDCAARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPE 367 (640)
T ss_pred cccccchhhhhhhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCcc
Confidence 999999988732 22344445555544 9999999999999987544
No 57
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=98.66 E-value=3.5e-08 Score=96.78 Aligned_cols=140 Identities=22% Similarity=0.327 Sum_probs=108.9
Q ss_pred CCCCCCccCCchHHHHhhhc--CCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCC---------
Q 018870 126 GVASTDVFGVPIEVTVQRQQ--YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNA--------- 194 (349)
Q Consensus 126 ~~~~~~vFGv~L~~l~~~~~--~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~--------- 194 (349)
|.+..++-|.++...+..++ .+...|.....-+++.+.+|+-++|++|.+..+++.+++++.-..+...
T Consensus 45 g~~~~~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~ 124 (514)
T KOG4370|consen 45 GVAIKRVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAA 124 (514)
T ss_pred CCcCChhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHH
Confidence 44455666666655444442 4677899999999999999999999999999987777776544332110
Q ss_pred -----------------C--------------CCCCCChhhHHhhHHHHHhcCCCCCCChHHHHHHHHHH------HHHH
Q 018870 195 -----------------S--------------LPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGAR------SSIH 237 (349)
Q Consensus 195 -----------------~--------------~~~~~d~~~vA~lLK~fLReLPePLl~~~ly~~~~~~~------~~i~ 237 (349)
. -.+++.|.+||++||.|||+||+||+|.++...|..+. ...+
T Consensus 125 ~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~ 204 (514)
T KOG4370|consen 125 GLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQN 204 (514)
T ss_pred hHHHHhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHH
Confidence 0 01256789999999999999999999999999998873 3567
Q ss_pred HHHHHHHhhhh------------------------hcccchhhhcccccccc
Q 018870 238 AMRNTLKKLSN------------------------MDARSLAMEMAPVIMWQ 265 (349)
Q Consensus 238 ~l~~ll~~LP~------------------------M~~~NLAivFgPtLl~~ 265 (349)
.+..++..||+ |+..||+|+..|++-.+
T Consensus 205 efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~q~s 256 (514)
T KOG4370|consen 205 EFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTEQES 256 (514)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhcchhheeeecchHHHHH
Confidence 78888899988 99999999999998543
No 58
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=97.54 E-value=0.00014 Score=75.40 Aligned_cols=135 Identities=14% Similarity=0.120 Sum_probs=97.2
Q ss_pred CCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHH----HHHHHHhcCCCCCCCCCCChhh
Q 018870 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQ----HLVSMYNQDPNASLPEGVNPFD 204 (349)
Q Consensus 129 ~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~----~L~~~~d~~~~~~~~~~~d~~~ 204 (349)
....||+||+..+... ...|..+......|...+..++++||..-...-+. .....++...++.......+|.
T Consensus 413 ~kv~fdaPlS~~c~d~---gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~t 489 (741)
T KOG4724|consen 413 AKVPFDAPLSVFCADQ---GKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHT 489 (741)
T ss_pred hhCcCCCchhhccccc---CCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchH
Confidence 4568999999998854 45555555566677788999999998843333222 2222333323333334579999
Q ss_pred HHhhHHHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHH--------HHHhhhh----------------------
Q 018870 205 VAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRN--------TLKKLSN---------------------- 248 (349)
Q Consensus 205 vA~lLK~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~--------ll~~LP~---------------------- 248 (349)
+++++|.|+|++|..++..+.+.+++.+ .++.+.|+. .....|.
T Consensus 490 aasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~ 569 (741)
T KOG4724|consen 490 AASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEE 569 (741)
T ss_pred HHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccccc
Confidence 9999999999999999999999999988 345666666 4445554
Q ss_pred --hcccchhhhccccccccC
Q 018870 249 --MDARSLAMEMAPVIMWQK 266 (349)
Q Consensus 249 --M~~~NLAivFgPtLl~~~ 266 (349)
|+..|++.|..|++..-.
T Consensus 570 ~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 570 TSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred ccccccccCCCCCccccchh
Confidence 999999999999887643
No 59
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=97.05 E-value=0.003 Score=63.74 Aligned_cols=120 Identities=16% Similarity=0.337 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCee---eccCCHHHHHHHHH-HHhcCCCC---C------CCCCCChhhHHhhHHHHHhcC
Q 018870 150 VPHILVKCADYLVLSGLNSQFLF---KAEGDKKVIQHLVS-MYNQDPNA---S------LPEGVNPFDVAALAKYYLASL 216 (349)
Q Consensus 150 VP~ii~~ci~~Le~~gl~~eGIF---R~~G~~~~v~~L~~-~~d~~~~~---~------~~~~~d~~~vA~lLK~fLReL 216 (349)
|=.+|..|.++|..+|+++++|| |-.-+...++.+.. .|..+... . .....++|+++++||-.+..|
T Consensus 8 v~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RL 87 (420)
T PF08101_consen 8 VKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRL 87 (420)
T ss_pred HHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 45689999999999999999997 66667777766554 45554432 0 123579999999999999999
Q ss_pred CCCCCChHHHHHHHHHHH------------------------HHHHHHHHHHhhhh------hcccchhhhccccccccC
Q 018870 217 PEPLTTFELYDEIKGARS------------------------SIHAMRNTLKKLSN------MDARSLAMEMAPVIMWQK 266 (349)
Q Consensus 217 PePLl~~~ly~~~~~~~~------------------------~i~~l~~ll~~LP~------M~~~NLAivFgPtLl~~~ 266 (349)
|..+++.+.|..|..... .+..+-++|..+.. |+..-|+-.+|+=.|...
T Consensus 88 p~gvVgW~~Y~~Fk~~E~~~~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~ 167 (420)
T PF08101_consen 88 PGGVVGWDSYEEFKRREREAGYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHP 167 (420)
T ss_pred CCCccccHHHHHHHHHHhhcCCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCC
Confidence 999999999999987621 12222233322222 999999999999999866
Q ss_pred CCC
Q 018870 267 ERK 269 (349)
Q Consensus 267 ~~~ 269 (349)
...
T Consensus 168 ~~~ 170 (420)
T PF08101_consen 168 DFG 170 (420)
T ss_pred Ccc
Confidence 554
No 60
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=94.01 E-value=0.022 Score=63.18 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=78.3
Q ss_pred ccCCchHHHHhhhcCCCCCCHHHHH-HHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCC-C-CC----CCCCChhh
Q 018870 132 VFGVPIEVTVQRQQYGKPVPHILVK-CADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-A-SL----PEGVNPFD 204 (349)
Q Consensus 132 vFGv~L~~l~~~~~~~~~VP~ii~~-ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~-~-~~----~~~~d~~~ 204 (349)
++|+++..+..........|.++.. |.......|....|+||.+|....+...+..++.... . +. ....++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 8898887773312235678888888 7888888899999999999999999999999987652 1 11 11235566
Q ss_pred HHhhHHHHHhcC--CCCCCChHHHHHHHH
Q 018870 205 VAALAKYYLASL--PEPLTTFELYDEIKG 231 (349)
Q Consensus 205 vA~lLK~fLReL--PePLl~~~ly~~~~~ 231 (349)
..+.++.|+|.+ |.+....+.|..|+.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~ 570 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFME 570 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhh
Confidence 777999999999 999999999988884
No 61
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=66.27 E-value=1.6 Score=45.52 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=19.0
Q ss_pred hcccchhhhccccccccCCCC
Q 018870 249 MDARSLAMEMAPVIMWQKERK 269 (349)
Q Consensus 249 M~~~NLAivFgPtLl~~~~~~ 269 (349)
|.+.|||+|+||+|+|+++.+
T Consensus 16 mhA~Nla~vwapnllrskeie 36 (670)
T KOG1449|consen 16 MHAINLAEVWAPNLLRSKEIE 36 (670)
T ss_pred HHHhhHHHhhhhhhHHHHHHH
Confidence 999999999999999977654
No 62
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=49.60 E-value=21 Score=39.62 Aligned_cols=96 Identities=17% Similarity=0.085 Sum_probs=63.3
Q ss_pred CCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCC---eeeccC-CHHHHHHHHHHHhcCC-C-CCCCCCCCh
Q 018870 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQF---LFKAEG-DKKVIQHLVSMYNQDP-N-ASLPEGVNP 202 (349)
Q Consensus 129 ~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eG---IFR~~G-~~~~v~~L~~~~d~~~-~-~~~~~~~d~ 202 (349)
...++|.+..-.++. -..-|.+..+-+.+|+..|+..|| |-|.+. +...|+.-...|+.++ . ....+..+|
T Consensus 353 lss~~~rps~g~le~---~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~p 429 (1100)
T KOG4271|consen 353 LSSVLGRPSLGALEN---SDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQP 429 (1100)
T ss_pred hhhhhcCcchhhhhh---hcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCc
Confidence 345777764433332 355799999999999999999999 888888 5555655444554332 2 222334578
Q ss_pred h--hHHhhHH--HHHhcCCCCCCChHHHH
Q 018870 203 F--DVAALAK--YYLASLPEPLTTFELYD 227 (349)
Q Consensus 203 ~--~vA~lLK--~fLReLPePLl~~~ly~ 227 (349)
| .|...++ .-||.++..+.+.....
T Consensus 430 h~s~v~e~Ie~~~~lr~~~~~~~~~~~C~ 458 (1100)
T KOG4271|consen 430 HLSYVGESIEKSHSLRQQGQQIAPKLQCV 458 (1100)
T ss_pred chhHHHhhhhhhhhhhhcccccCCccccc
Confidence 8 5777777 67777777666654433
No 63
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=48.01 E-value=1.7 Score=45.30 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=72.7
Q ss_pred CCCccCCchHHHHhhhcCCCCCCH-HHHHHHHHHHh---cC--CCCCCeeeccCCHHHHHHHHHHHhcCCCCCC---CCC
Q 018870 129 STDVFGVPIEVTVQRQQYGKPVPH-ILVKCADYLVL---SG--LNSQFLFKAEGDKKVIQHLVSMYNQDPNASL---PEG 199 (349)
Q Consensus 129 ~~~vFGv~L~~l~~~~~~~~~VP~-ii~~ci~~Le~---~g--l~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~---~~~ 199 (349)
....||--|..+... .+..||. .+.+|+..+++ ++ ++..|.|+++. |.+...+. .-.
T Consensus 206 ~~~~~gl~ltr~~~~--~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~------------D~gae~d~~af~~p 271 (670)
T KOG1449|consen 206 SNLNCGLVLTRMEVG--LGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVE------------DEGAEVDGEAFRWP 271 (670)
T ss_pred cCccccceecceeec--cccccchhhhccchhccccchhccCCcccCcceeccc------------cccccccccccCCc
Confidence 456677666555443 4788998 78888877765 22 44456666654 34443321 224
Q ss_pred CChhhHHhhHHHHHhcCCCCCCChHHHHHHHHHHH------------------HHHHHHHHHHhhhhhcccchhhhcccc
Q 018870 200 VNPFDVAALAKYYLASLPEPLTTFELYDEIKGARS------------------SIHAMRNTLKKLSNMDARSLAMEMAPV 261 (349)
Q Consensus 200 ~d~~~vA~lLK~fLReLPePLl~~~ly~~~~~~~~------------------~i~~l~~ll~~LP~M~~~NLAivFgPt 261 (349)
.|+.++..+++.|.|++|.|+.. ..|+.=-...+ ....|...+..+= =.-.|++|++.|+
T Consensus 272 ~di~v~S~d~dp~s~Q~~pp~~~-~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~-~~~~s~~I~~~~~ 349 (670)
T KOG1449|consen 272 SDIVVESWDMDPYSRQLPPPYPK-EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLC-KSKKSLAIVWSPN 349 (670)
T ss_pred cceeeeccccChhhhhcCCCCcc-cccccccCcccceeeeccccccCCcccchHhhhhchhhhhhc-cccccceeecCCC
Confidence 68899999999999999999544 22221100000 0111111111111 2348999999999
Q ss_pred ccccCC
Q 018870 262 IMWQKE 267 (349)
Q Consensus 262 Ll~~~~ 267 (349)
++|++.
T Consensus 350 ~~r~pp 355 (670)
T KOG1449|consen 350 LFRPPP 355 (670)
T ss_pred CCCCCC
Confidence 999876
No 64
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=30.98 E-value=64 Score=32.91 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=36.0
Q ss_pred CCChhhHHhhHHHHHhcCCCCCCChHHHHHHHHHH-------------HHHHHHHHHHHhhhh
Q 018870 199 GVNPFDVAALAKYYLASLPEPLTTFELYDEIKGAR-------------SSIHAMRNTLKKLSN 248 (349)
Q Consensus 199 ~~d~~~vA~lLK~fLReLPePLl~~~ly~~~~~~~-------------~~i~~l~~ll~~LP~ 248 (349)
..|+|+.++..|+|+|..|+|++|-++--.+.++. ..-..+...+..||.
T Consensus 117 ~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpe 179 (514)
T KOG4370|consen 117 FADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPE 179 (514)
T ss_pred HHHHHHHHhHHHHhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcch
Confidence 46899999999999999999999976544444332 122345666677776
No 65
>PF13606 Ank_3: Ankyrin repeat
Probab=27.30 E-value=37 Score=20.90 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=12.8
Q ss_pred cchhHHHHHHHHHhch
Q 018870 322 DFGAIEVVQCLMEQHN 337 (349)
Q Consensus 322 ~~~~i~vV~~LIe~~~ 337 (349)
..+.+++|++||++.-
T Consensus 11 ~~g~~e~v~~Ll~~ga 26 (30)
T PF13606_consen 11 SNGNIEIVKYLLEHGA 26 (30)
T ss_pred HhCCHHHHHHHHHcCC
Confidence 3567899999999853
No 66
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=24.69 E-value=9.9 Score=40.34 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=32.8
Q ss_pred hhhhhhhhhcc------ccccccchhccchhhhHHHHHhhhcchhhH
Q 018870 77 AAITGMFLRRG------FSETKDKVAVGKIKVEEAAKKTAQKSKTIL 117 (349)
Q Consensus 77 a~~t~~~lrk~------~~~~~~~i~~~~~~~ee~~~~~~~k~~~~~ 117 (349)
...+|.|.||+ |..|.+++.+.+++|+.|..++|+.|....
T Consensus 175 pl~~H~~~rktf~~~~fC~~~~~~~l~~gfrC~~C~~KfHq~Cs~~v 221 (678)
T KOG0193|consen 175 PLTTHNFVRKTFFPLAFCDSCCNKFLFTGFRCQTCGYKFHQSCSPRV 221 (678)
T ss_pred CccceeeeeccccchhhhhhhcchhhhcccccCCCCCccccccCCCC
Confidence 34567687887 466778889999999999999999997543
No 67
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=24.19 E-value=95 Score=23.51 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=33.7
Q ss_pred CCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHHHhcCCCC
Q 018870 168 SQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEP 219 (349)
Q Consensus 168 ~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~fLReLPeP 219 (349)
.+|-|+++|+.. +.++.+.++-. +++ .+.+++++++-..|..+|..
T Consensus 4 ~~~~~~v~G~~~-l~~l~~~~~~~----l~~-~~~~Tl~G~i~~~l~~iP~~ 49 (81)
T PF03471_consen 4 DDGTYIVSGSTP-LDDLNELLGLD----LPE-EDYDTLGGLILEQLGRIPEV 49 (81)
T ss_dssp TTSEEEEETTSB-HHHHHHHHTS-----TTT-TTTSBHHHHHHHHHTSS--T
T ss_pred cCCEEEEEecCC-HHHHHHHHCcC----CCc-cchhhHHHHHHHHcCCCCCC
Confidence 468899999864 77788888753 333 46779999999999998863
No 68
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=21.53 E-value=2.7e+02 Score=21.86 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHHHhcC---------------CCCCCChHHHHHHHH
Q 018870 176 GDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASL---------------PEPLTTFELYDEIKG 231 (349)
Q Consensus 176 G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~fLReL---------------PePLl~~~ly~~~~~ 231 (349)
=....++++...+.. ..+ .+.-+..++++-|.|..+| .+||-|..+-++|..
T Consensus 17 f~k~~iKr~~~~~~~-~~v---~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rr 83 (85)
T cd08048 17 FPKAAIKRLIQSVTG-QSV---SQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRR 83 (85)
T ss_pred ccHHHHHHHHHHHcC-CCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHH
Confidence 455666776665543 222 2345678999999999999 899999988777653
Done!