Query 018870
Match_columns 349
No_of_seqs 329 out of 1528
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:20:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 100.0 4.8E-37 1.7E-41 280.3 15.9 172 124-343 11-214 (214)
2 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 1.3E-36 4.5E-41 280.2 14.9 181 126-349 15-228 (229)
3 1tx4_A P50-rhogap; complex (GT 100.0 6.2E-37 2.1E-41 276.4 11.9 142 127-268 3-173 (198)
4 2ee4_A RHO GTPase activating p 100.0 9.8E-37 3.4E-41 277.3 13.3 169 126-343 6-205 (209)
5 2osa_A N-chimaerin; RHO-GAP, G 100.0 4.4E-36 1.5E-40 271.6 14.2 140 129-270 5-177 (202)
6 1ow3_A RHO-GTPase-activating p 100.0 3.2E-36 1.1E-40 280.0 11.9 173 127-346 39-240 (242)
7 3msx_B RHO GTPase-activating p 100.0 1E-35 3.5E-40 268.8 13.3 137 128-269 8-174 (201)
8 3cxl_A N-chimerin; SH2, RHO-GA 100.0 2.6E-36 9E-41 304.6 10.0 179 88-269 223-437 (463)
9 3fk2_A Glucocorticoid receptor 100.0 2.5E-35 8.5E-40 274.7 13.0 140 127-269 48-218 (246)
10 1pbw_A Rhogap domain, phosphat 100.0 5.8E-36 2E-40 273.7 8.4 163 130-343 5-201 (216)
11 3kuq_A RHO GTPase-activating p 100.0 1.6E-34 5.4E-39 266.3 15.1 142 126-269 14-185 (228)
12 1f7c_A Rhogap protein; GTPase 100.0 7.9E-35 2.7E-39 268.8 11.5 179 122-346 7-222 (231)
13 2ovj_A Mgcracgap, RAC GTPase-a 100.0 8.8E-34 3E-38 256.5 11.7 163 135-342 4-196 (201)
14 3eap_A RHO GTPase-activating p 100.0 1E-33 3.4E-38 267.4 9.9 173 128-345 60-262 (271)
15 2xs6_A Phosphatidylinositol 3- 100.0 6.6E-32 2.3E-36 246.7 5.1 132 129-269 19-177 (214)
16 3qis_A Inositol polyphosphate 100.0 9.2E-29 3.1E-33 242.7 12.3 120 148-269 197-340 (366)
17 4b6d_A RAC GTPase-activating p 42.0 1.8 6.1E-05 30.9 -2.6 30 88-117 22-53 (61)
18 1kbe_A Kinase suppressor of RA 38.8 2.6 9E-05 28.7 -2.0 31 85-116 14-44 (49)
19 2fnf_X Putative RAS effector N 33.3 5.1 0.00018 29.3 -1.3 30 88-117 38-67 (72)
20 1faq_A RAF-1; transferase, ser 28.7 4.9 0.00017 27.0 -2.0 28 88-116 17-44 (52)
21 1rfh_A RAS association (ralgds 24.5 6.2 0.00021 27.6 -2.2 29 88-116 25-53 (59)
22 3llb_A Uncharacterized protein 20.6 78 0.0027 23.1 3.2 46 168-219 7-52 (83)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=280.29 Aligned_cols=172 Identities=21% Similarity=0.416 Sum_probs=147.5
Q ss_pred hcCCCCCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCC--CCC
Q 018870 124 QKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE--GVN 201 (349)
Q Consensus 124 ~~~~~~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~--~~d 201 (349)
.+|..+.++||++|+++++++ +..||.+|.+|++||+++|+++|||||++|+..++++|++.+|++..+++.. ..|
T Consensus 11 ~~~~~~~~vFG~~L~~~~~~~--~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~d 88 (214)
T 3byi_A 11 EKGLIKDQIFGSHLHKVCERE--NSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWED 88 (214)
T ss_dssp HHTSCCCCSTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCS
T ss_pred hcCCCcCCccCCcHHHHHHHc--CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccc
Confidence 356677899999999999886 5789999999999999999999999999999999999999999987666543 259
Q ss_pred hhhHHhhHHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcc
Q 018870 202 PFDVAALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDA 251 (349)
Q Consensus 202 ~~~vA~lLK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~ 251 (349)
+|+||++||.|||+||+||+|+++|+.|+++. +++..++.++.+||+ |++
T Consensus 89 vh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~ 168 (214)
T 3byi_A 89 IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMST 168 (214)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCH
T ss_pred hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCH
Confidence 99999999999999999999999999999873 467889999999998 999
Q ss_pred cchhhhccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHH
Q 018870 252 RSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQC 331 (349)
Q Consensus 252 ~NLAivFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~ 331 (349)
+|||+||||+|+|++..+.. +. .+ ......||++
T Consensus 169 ~NLa~vf~P~Ll~~~~~~~~---------------------------~~----~~---------------~~~~~~vve~ 202 (214)
T 3byi_A 169 QSLGIVFGPTLLRAENETGN---------------------------MA----IH---------------MVYQNQIAEL 202 (214)
T ss_dssp HHHHHHHHHHHHCCTTSSSC---------------------------HH----HH---------------HHHHHHHHHH
T ss_pred HHhHHHhccccCCCCCccHH---------------------------HH----HH---------------HHHHHHHHHH
Confidence 99999999999998765421 00 00 1234689999
Q ss_pred HHHhchhhcCCC
Q 018870 332 LMEQHNAIFTDA 343 (349)
Q Consensus 332 LIe~~~~iF~~~ 343 (349)
||+||+.||.++
T Consensus 203 LI~~~~~iF~~d 214 (214)
T 3byi_A 203 MLSEYSKIFGSE 214 (214)
T ss_dssp HHHTHHHHHC--
T ss_pred HHHHHHHhcCCC
Confidence 999999999863
No 2
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=280.24 Aligned_cols=181 Identities=22% Similarity=0.390 Sum_probs=139.3
Q ss_pred CCCCCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCC---CCh
Q 018870 126 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG---VNP 202 (349)
Q Consensus 126 ~~~~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~---~d~ 202 (349)
+..+.++||++|+++++++ +..||.+|.+|++||+++|+ +|||||++|+..++++|++.||.+...++... .|+
T Consensus 15 ~~~~~~vFG~~L~~~~~~~--~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dv 91 (229)
T 3iug_A 15 YFQGERVFGCDLGEHLLNS--GFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDI 91 (229)
T ss_dssp ---CCCSTTSCHHHHHHHH--CCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCH
T ss_pred CCCCCCeECcchHHHHHhc--CCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccch
Confidence 3456789999999999886 57899999999999999999 89999999999999999999999876655432 599
Q ss_pred hhHHhhHHHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hccc
Q 018870 203 FDVAALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDAR 252 (349)
Q Consensus 203 ~~vA~lLK~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~ 252 (349)
|+||++||.|||+||+||+|+++|+.|+++ .+++..++.++.+||. |+++
T Consensus 92 h~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 171 (229)
T 3iug_A 92 HSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAK 171 (229)
T ss_dssp HHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChH
Confidence 999999999999999999999999999987 3567889999999998 9999
Q ss_pred chhhhccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHH
Q 018870 253 SLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCL 332 (349)
Q Consensus 253 NLAivFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~L 332 (349)
|||+||||+|+|+++.+.... +. . ...+ ....+..||++|
T Consensus 172 NLAivf~P~Ll~~~~~~~~~~-----------~~-~---------------------------~~~~-~~~~~~~vve~L 211 (229)
T 3iug_A 172 NLAIVWAPNLLRSKQIESACF-----------SG-T---------------------------AAFM-EVRIQSVVVEFI 211 (229)
T ss_dssp HHHHHHHHHHCCC-----------------------------------------------------------CHHHHHHH
T ss_pred HHHHHHhccccCCCccccccc-----------ch-H---------------------------HHHH-HHHHHHHHHHHH
Confidence 999999999999876542100 00 0 0000 012456899999
Q ss_pred HHhchhhcCCCcccccC
Q 018870 333 MEQHNAIFTDANETVWR 349 (349)
Q Consensus 333 Ie~~~~iF~~~~e~~~~ 349 (349)
|+||+.||.++.+++++
T Consensus 212 I~~~~~iF~~~~~~~~~ 228 (229)
T 3iug_A 212 LNHVDVLFSGRISMAMQ 228 (229)
T ss_dssp HHTHHHHTC--------
T ss_pred HHhHHHhCCCcHHhhcc
Confidence 99999999999888753
No 3
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=6.2e-37 Score=276.41 Aligned_cols=142 Identities=25% Similarity=0.456 Sum_probs=128.5
Q ss_pred CCCCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHH
Q 018870 127 VASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVA 206 (349)
Q Consensus 127 ~~~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA 206 (349)
..+.++||++|++++++++....||.+|.+|++||+++|+++|||||++|+..++++|++.||++..+++....|+|++|
T Consensus 3 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~a 82 (198)
T 1tx4_A 3 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPA 82 (198)
T ss_dssp CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred CCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHHH
Confidence 34678999999999988643358999999999999999999999999999999999999999999877764456999999
Q ss_pred hhHHHHHhcCCCCCCChHHHHHHHHHH-----HHHHHHHHHHHhhhh------------------------hcccchhhh
Q 018870 207 ALAKYYLASLPEPLTTFELYDEIKGAR-----SSIHAMRNTLKKLSN------------------------MDARSLAME 257 (349)
Q Consensus 207 ~lLK~fLReLPePLl~~~ly~~~~~~~-----~~i~~l~~ll~~LP~------------------------M~~~NLAiv 257 (349)
++||.|||+||+||+|+++|+.|+++. ++++.++.++.+||+ |+++|||+|
T Consensus 83 ~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~v 162 (198)
T 1tx4_A 83 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVV 162 (198)
T ss_dssp HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhh
Confidence 999999999999999999999999873 468889999999998 999999999
Q ss_pred ccccccccCCC
Q 018870 258 MAPVIMWQKER 268 (349)
Q Consensus 258 FgPtLl~~~~~ 268 (349)
|||+|+|+++.
T Consensus 163 f~P~Ll~~~~~ 173 (198)
T 1tx4_A 163 FGPNLLWAKDA 173 (198)
T ss_dssp HHHHHCCCSSH
T ss_pred hcccccCCCCc
Confidence 99999998753
No 4
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=9.8e-37 Score=277.30 Aligned_cols=169 Identities=26% Similarity=0.425 Sum_probs=144.3
Q ss_pred CCCCCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCC-CCChhh
Q 018870 126 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFD 204 (349)
Q Consensus 126 ~~~~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~-~~d~~~ 204 (349)
+....++||++|++++.+ +..||.+|.+|++||+++|+++|||||++|+..++++|++.||++..+++.. ..|+|+
T Consensus 6 ~~~~~~~FG~~L~~~~~~---~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~ 82 (209)
T 2ee4_A 6 SGWESNYFGMPLQDLVTA---EKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNA 82 (209)
T ss_dssp SSSCCSSSSSCHHHHSCS---SCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHH
T ss_pred CCCCCCeeCCcHHHHHhc---CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHH
Confidence 344678999999999875 3679999999999999999999999999999999999999999987665432 479999
Q ss_pred HHhhHHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccch
Q 018870 205 VAALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSL 254 (349)
Q Consensus 205 vA~lLK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NL 254 (349)
||++||.|||+||+||+|+++|+.|+++. +++..++.++.+||+ |+++||
T Consensus 83 va~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NL 162 (209)
T 2ee4_A 83 VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNL 162 (209)
T ss_dssp HHHHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence 99999999999999999999999999873 567888999999997 999999
Q ss_pred hhhccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHH
Q 018870 255 AMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLME 334 (349)
Q Consensus 255 AivFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe 334 (349)
|+||||+|+|++..+.. .+. .......||++||+
T Consensus 163 aivf~P~L~~~~~~~~~--------------~l~--------------------------------~~~~~~~vve~LI~ 196 (209)
T 2ee4_A 163 SICFWPTLMRPDFENRE--------------FLS--------------------------------TTKIHQSVVETFIQ 196 (209)
T ss_dssp HHHHHHHHSCCCCCSSC--------------CSC--------------------------------CCTTHHHHHHHHHH
T ss_pred HHHhcccccCCCCccHH--------------HHH--------------------------------HhHHHHHHHHHHHH
Confidence 99999999998765321 000 01234689999999
Q ss_pred hchhhcCCC
Q 018870 335 QHNAIFTDA 343 (349)
Q Consensus 335 ~~~~iF~~~ 343 (349)
||+.||.+.
T Consensus 197 ~~~~iF~~~ 205 (209)
T 2ee4_A 197 QCQFFFYNG 205 (209)
T ss_dssp THHHHTTCC
T ss_pred hhHHHcCCC
Confidence 999999854
No 5
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.4e-36 Score=271.62 Aligned_cols=140 Identities=21% Similarity=0.388 Sum_probs=124.5
Q ss_pred CCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCC-CCCCC--CCCChhhH
Q 018870 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-NASLP--EGVNPFDV 205 (349)
Q Consensus 129 ~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~-~~~~~--~~~d~~~v 205 (349)
..++||++|+++++++ +..||.+|.+|+++|+++|+++|||||++|+..++++|++.||++. ..++. ...|+|+|
T Consensus 5 ~~~vFG~~L~~~~~~~--~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~v 82 (202)
T 2osa_A 5 VKKVYSCDLTTLVKAH--TTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINII 82 (202)
T ss_dssp --CCTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHH
T ss_pred CCCccCCChHHHHHHc--CCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHH
Confidence 3579999999999886 5779999999999999999999999999999999999999999853 34443 24699999
Q ss_pred HhhHHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchh
Q 018870 206 AALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLA 255 (349)
Q Consensus 206 A~lLK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLA 255 (349)
|++||.|||+||+||+|+++|+.|+++. ++++.++.++.+||+ |+++|||
T Consensus 83 a~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa 162 (202)
T 2osa_A 83 TGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLG 162 (202)
T ss_dssp HHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHH
Confidence 9999999999999999999999999873 467889999999998 9999999
Q ss_pred hhccccccccCCCCh
Q 018870 256 MEMAPVIMWQKERKP 270 (349)
Q Consensus 256 ivFgPtLl~~~~~~~ 270 (349)
+||||+|++++..++
T Consensus 163 ~vf~P~Ll~~~~~~~ 177 (202)
T 2osa_A 163 IVFGPTLMRSPELDA 177 (202)
T ss_dssp HHHHHHHCCCCCCCH
T ss_pred HHHccccCCCCCccH
Confidence 999999999887654
No 6
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=3.2e-36 Score=280.04 Aligned_cols=173 Identities=21% Similarity=0.400 Sum_probs=144.5
Q ss_pred CCCCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHH
Q 018870 127 VASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVA 206 (349)
Q Consensus 127 ~~~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA 206 (349)
..+.++||++|++++++++....||.+|.+|++||+++|+++|||||++|+..++++|++.||+|..+++....|+|++|
T Consensus 39 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~va 118 (242)
T 1ow3_A 39 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPA 118 (242)
T ss_dssp CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred CCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHHHH
Confidence 44668999999999988654468999999999999999999999999999999999999999999877764446999999
Q ss_pred hhHHHHHhcCCCCCCChHHHHHHHHHH-----HHHHHHHHHHHhhhh------------------------hcccchhhh
Q 018870 207 ALAKYYLASLPEPLTTFELYDEIKGAR-----SSIHAMRNTLKKLSN------------------------MDARSLAME 257 (349)
Q Consensus 207 ~lLK~fLReLPePLl~~~ly~~~~~~~-----~~i~~l~~ll~~LP~------------------------M~~~NLAiv 257 (349)
++||.|||+||+||+|+++|+.|+++. ++++.++.++.+||+ |+++|||+|
T Consensus 119 ~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 198 (242)
T 1ow3_A 119 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVV 198 (242)
T ss_dssp HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHHh
Confidence 999999999999999999999999873 468889999999998 999999999
Q ss_pred ccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHhch
Q 018870 258 MAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHN 337 (349)
Q Consensus 258 FgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~~~ 337 (349)
|||||+|+++.... +. + ......+|++||+||+
T Consensus 199 f~P~Ll~~~~~~~~---------------------------~~----------------~----~~~~~~~v~~LI~~~~ 231 (242)
T 1ow3_A 199 FGPNLLWAKDAAIT---------------------------LK----------------A----INPINTFTKFLLDHQG 231 (242)
T ss_dssp HHHHHCCCSSHHHH---------------------------HH----------------T----HHHHHHHHHHHHHTHH
T ss_pred hcchhCCCCCcccc---------------------------HH----------------H----HHHHHHHHHHHHHHHH
Confidence 99999998753210 00 0 1133578999999999
Q ss_pred hhcCCCccc
Q 018870 338 AIFTDANET 346 (349)
Q Consensus 338 ~iF~~~~e~ 346 (349)
.||.+.++.
T Consensus 232 ~iF~~~~~~ 240 (242)
T 1ow3_A 232 ELFPSPDPS 240 (242)
T ss_dssp HHC------
T ss_pred HHcCCCCCC
Confidence 999987654
No 7
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=268.76 Aligned_cols=137 Identities=21% Similarity=0.384 Sum_probs=124.6
Q ss_pred CCCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHh
Q 018870 128 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA 207 (349)
Q Consensus 128 ~~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~ 207 (349)
.++++||++|+++++++ .||.+|.+|++||+++|+++|||||++|+..++++|++.||.|..+++ +..|+|+||+
T Consensus 8 ~~~~vFG~~L~~~~~~~----~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~-~~~d~~~va~ 82 (201)
T 3msx_B 8 MPGQLFGISLPNICEND----NLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHL-DCESIFVIAS 82 (201)
T ss_dssp --CCCTTSCHHHHSGGG----CCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCT-TSSCHHHHHH
T ss_pred CCCCeeCCcHHHHhcCC----CCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCC-CcccHHHHHH
Confidence 35689999999999863 599999999999999999999999999999999999999999987665 4589999999
Q ss_pred hHHHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchhhh
Q 018870 208 LAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLAME 257 (349)
Q Consensus 208 lLK~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLAiv 257 (349)
+||.|||+||+||+|+++|+.|+++ .+++..++.++.+||. |+++|||+|
T Consensus 83 lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~v 162 (201)
T 3msx_B 83 VLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVC 162 (201)
T ss_dssp HHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhh
Confidence 9999999999999999999999997 3577889999999998 999999999
Q ss_pred ccccccccCCCC
Q 018870 258 MAPVIMWQKERK 269 (349)
Q Consensus 258 FgPtLl~~~~~~ 269 (349)
|||+|+|++..+
T Consensus 163 f~P~ll~~~~~~ 174 (201)
T 3msx_B 163 VAPSILWPPASS 174 (201)
T ss_dssp HHHHHCCCCTTS
T ss_pred hhccccCCCCCC
Confidence 999999988653
No 8
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=2.6e-36 Score=304.62 Aligned_cols=179 Identities=17% Similarity=0.290 Sum_probs=151.7
Q ss_pred ccccccchh---ccchhhhHHHHHhhhcchhhHHhHHhhhcCCCCCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhc
Q 018870 88 FSETKDKVA---VGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLS 164 (349)
Q Consensus 88 ~~~~~~~i~---~~~~~~ee~~~~~~~k~~~~~~~~~~~~~~~~~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~ 164 (349)
|..|.+.+. .++.+|.+|...||++|.......|.- ......++||++|+++++++ +..||.+|.+|+++|+++
T Consensus 223 C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~~vp~~C~~-~~~~~~~vFG~~L~~~~~~~--~~~vP~iv~~~i~~le~~ 299 (463)
T 3cxl_A 223 CEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKP-DLKHVKKVYSCDLTTLVKAH--TTKRPMVVDMCIREIESR 299 (463)
T ss_dssp CTTTCCBCCSSSCCEEEETTTCCEECHHHHTTSCSBCCG-GGGGCCCCTTSCHHHHHHHH--TCSSCHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHhcCeeccccCccccccccccccccccc-cccccccccccccchhhhcc--CCCCCeeHHHHHHHHHhc
Confidence 788988874 357899999999999997554222111 01124579999999999876 578999999999999999
Q ss_pred CCCCCCeeeccCCHHHHHHHHHHHhcCC-CCCCC--CCCChhhHHhhHHHHHhcCCCCCCChHHHHHHHHHH------HH
Q 018870 165 GLNSQFLFKAEGDKKVIQHLVSMYNQDP-NASLP--EGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGAR------SS 235 (349)
Q Consensus 165 gl~~eGIFR~~G~~~~v~~L~~~~d~~~-~~~~~--~~~d~~~vA~lLK~fLReLPePLl~~~ly~~~~~~~------~~ 235 (349)
|+++|||||++|+..++++|++.||.+. ..++. ...|+|+||++||.|||+||+||||+++|+.|+++. ++
T Consensus 300 gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~ 379 (463)
T 3cxl_A 300 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQ 379 (463)
T ss_dssp CSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHH
T ss_pred CCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999854 23332 246999999999999999999999999999999983 46
Q ss_pred HHHHHHHHHhhhh------------------------hcccchhhhccccccccCCCC
Q 018870 236 IHAMRNTLKKLSN------------------------MDARSLAMEMAPVIMWQKERK 269 (349)
Q Consensus 236 i~~l~~ll~~LP~------------------------M~~~NLAivFgPtLl~~~~~~ 269 (349)
+..++.++.+||+ |++.|||+||||+|+++++.+
T Consensus 380 ~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~ 437 (463)
T 3cxl_A 380 LETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELD 437 (463)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCSC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhhccccCCCCcc
Confidence 7889999999998 999999999999999988764
No 9
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=274.67 Aligned_cols=140 Identities=26% Similarity=0.549 Sum_probs=126.2
Q ss_pred CCCCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCC-CCChhhH
Q 018870 127 VASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPE-GVNPFDV 205 (349)
Q Consensus 127 ~~~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~-~~d~~~v 205 (349)
....++||++|+.++.. +..||.+|.+|++||+++|+++|||||++|+..++++|++.||.+...++.. ++|+|+|
T Consensus 48 ~~~~~vFGv~L~~~~~~---~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~v 124 (246)
T 3fk2_A 48 TWESNYFGVPLTTVVTP---EKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTV 124 (246)
T ss_dssp -CCCSSTTSCGGGGCCS---SSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHH
T ss_pred ccCCCeeCCCHHHHhcC---CCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHH
Confidence 34668999999999864 4689999999999999999999999999999999999999999998766543 5799999
Q ss_pred HhhHHHHHhcCCCCCCChHHHHHHHHH------HHHHHHHHHHHHhhhh------------------------hcccchh
Q 018870 206 AALAKYYLASLPEPLTTFELYDEIKGA------RSSIHAMRNTLKKLSN------------------------MDARSLA 255 (349)
Q Consensus 206 A~lLK~fLReLPePLl~~~ly~~~~~~------~~~i~~l~~ll~~LP~------------------------M~~~NLA 255 (349)
|++||.|||+||+||+|+++|+.|+++ .+++..++.++..||. |++.|||
T Consensus 125 a~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLA 204 (246)
T 3fk2_A 125 AGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLS 204 (246)
T ss_dssp HHHHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhH
Confidence 999999999999999999999999997 3478889999999998 9999999
Q ss_pred hhccccccccCCCC
Q 018870 256 MEMAPVIMWQKERK 269 (349)
Q Consensus 256 ivFgPtLl~~~~~~ 269 (349)
+||||+|+|++..+
T Consensus 205 ivf~P~Llrp~~~~ 218 (246)
T 3fk2_A 205 ICFWPTLMRPDFST 218 (246)
T ss_dssp HHHHHHHHCCCSSS
T ss_pred HHhcccccCCCCcc
Confidence 99999999976543
No 10
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=5.8e-36 Score=273.70 Aligned_cols=163 Identities=17% Similarity=0.299 Sum_probs=133.2
Q ss_pred CCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCC-CCCCCCCCChhhHHhh
Q 018870 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDP-NASLPEGVNPFDVAAL 208 (349)
Q Consensus 130 ~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~-~~~~~~~~d~~~vA~l 208 (349)
..+||++|++++++..++..||.+|.+|++||+++|+++|||||++|+..+ ++|++.||.+. .+++ +.+|+|+||++
T Consensus 5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~-~~~dv~~va~l 82 (216)
T 1pbw_A 5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDL-EMIDVHVLADA 82 (216)
T ss_dssp -------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCG-GGBCHHHHHHH
T ss_pred cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCc-cccCHHHHHHH
Confidence 469999999999876556889999999999999999999999999999999 99999999985 3443 45899999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHH-------HHHHHHHHHHH--hhhh------------------------hcccchh
Q 018870 209 AKYYLASLPEPLTTFELYDEIKGAR-------SSIHAMRNTLK--KLSN------------------------MDARSLA 255 (349)
Q Consensus 209 LK~fLReLPePLl~~~ly~~~~~~~-------~~i~~l~~ll~--~LP~------------------------M~~~NLA 255 (349)
||.|||+||+||||+++|+.|+++. +++..++.++. +||. |+++|||
T Consensus 83 LK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLA 162 (216)
T 1pbw_A 83 FKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLS 162 (216)
T ss_dssp HHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 9999999999999999999999974 46788999999 9998 9999999
Q ss_pred hhccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHh
Q 018870 256 MEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQ 335 (349)
Q Consensus 256 ivFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~ 335 (349)
+||||+|+|++..+.. . +..+..||++||+|
T Consensus 163 ivf~P~Ll~~~~~~~~----------------------------~---------------------~~~~~~vve~LI~~ 193 (216)
T 1pbw_A 163 EIFSPMLFRFSAASSD----------------------------N---------------------TENLIKVIEILIST 193 (216)
T ss_dssp HHHHHHHHTCSSCCHH----------------------------H---------------------HHHHHHHHHHHHHT
T ss_pred HHHhhhcCCCCCCchh----------------------------h---------------------hHHHHHHHHHHHhh
Confidence 9999999999876531 0 02457899999999
Q ss_pred chhhcCCC
Q 018870 336 HNAIFTDA 343 (349)
Q Consensus 336 ~~~iF~~~ 343 (349)
|+.||..+
T Consensus 194 ~~~iF~~~ 201 (216)
T 1pbw_A 194 EWNERQPA 201 (216)
T ss_dssp TC------
T ss_pred hHHhcCCC
Confidence 99999885
No 11
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=266.31 Aligned_cols=142 Identities=32% Similarity=0.468 Sum_probs=127.5
Q ss_pred CCCCCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhH
Q 018870 126 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV 205 (349)
Q Consensus 126 ~~~~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~v 205 (349)
+....++||++|+++++++ +..||.+|.+|++||+++|+++|||||++|+..++++|++.|+.+......+..|+|+|
T Consensus 14 ~~~~~~vFGv~L~~~~~~~--~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~v 91 (228)
T 3kuq_A 14 LYFQGSVFGVPLTVNVQRT--GQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYDV 91 (228)
T ss_dssp CBCTTSSTTCCHHHHHHHH--SSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHHH
T ss_pred CCCCCCEECCchHHHHHHc--CCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHHH
Confidence 3456789999999999886 57899999999999999999999999999999999999999987654433456899999
Q ss_pred HhhHHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh------------------------hcccchh
Q 018870 206 AALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN------------------------MDARSLA 255 (349)
Q Consensus 206 A~lLK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~------------------------M~~~NLA 255 (349)
|++||.|||+||+||||+++|+.|+.+. +++..++.++.+||+ |++.|||
T Consensus 92 a~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 171 (228)
T 3kuq_A 92 ADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLA 171 (228)
T ss_dssp HHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhH
Confidence 9999999999999999999999999973 467889999999998 9999999
Q ss_pred hhccccccccCCCC
Q 018870 256 MEMAPVIMWQKERK 269 (349)
Q Consensus 256 ivFgPtLl~~~~~~ 269 (349)
+||||+|||++..+
T Consensus 172 ivf~P~Ll~~~~~~ 185 (228)
T 3kuq_A 172 VCLAPSLFHLNTLK 185 (228)
T ss_dssp HHHHHHHHTCCCC-
T ss_pred HHHhhhhcCCCCCC
Confidence 99999999987654
No 12
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=7.9e-35 Score=268.82 Aligned_cols=179 Identities=20% Similarity=0.325 Sum_probs=125.2
Q ss_pred hhhcCCC-CCCccCCchHHHHhhhc-CCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHH-HHhcCC--CCCC
Q 018870 122 RWQKGVA-STDVFGVPIEVTVQRQQ-YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVS-MYNQDP--NASL 196 (349)
Q Consensus 122 ~~~~~~~-~~~vFGv~L~~l~~~~~-~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~-~~d~~~--~~~~ 196 (349)
.|..... +.++||+||...++++. -...+|.+|.+|++||+++|+++|||||++|+..++++|++ .+|.+. .+++
T Consensus 7 ~W~~~m~~~~pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l 86 (231)
T 1f7c_A 7 LWMEAMDGREPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETET 86 (231)
T ss_dssp ------------------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CC
T ss_pred HHHHHcCCCCCccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCc
Confidence 4555443 45799999999887642 22457999999999999999999999999999999999987 578764 3444
Q ss_pred C--CCCChhhHHhhHHHHHhcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh--------------------
Q 018870 197 P--EGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN-------------------- 248 (349)
Q Consensus 197 ~--~~~d~~~vA~lLK~fLReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~-------------------- 248 (349)
. ...|+|+||++||.|||+||+||+|+++|+.|+.+. +++..++.++.+||+
T Consensus 87 ~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s 166 (231)
T 1f7c_A 87 EICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNH 166 (231)
T ss_dssp CCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcC
Confidence 3 247999999999999999999999999999999873 567889999999998
Q ss_pred ----hcccchhhhccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcch
Q 018870 249 ----MDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFG 324 (349)
Q Consensus 249 ----M~~~NLAivFgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 324 (349)
|+++|||+||||+|+|++..+... +. + ...
T Consensus 167 ~~NkM~~~NLAivf~P~Ll~~~~~~~~~--------------------------~~----------------~----~~~ 200 (231)
T 1f7c_A 167 KQNLMTVANLGVVFGPTLLRPQEETVAA--------------------------IM----------------D----IKF 200 (231)
T ss_dssp HHHCCCHHHHHHHHHHHHSCC---CCSG--------------------------GG----------------G----HHH
T ss_pred CCCCCCHHHHHHHhccccCCCCcccHHH--------------------------HH----------------H----HHH
Confidence 999999999999999987643210 00 0 123
Q ss_pred hHHHHHHHHHhchhhcCCCccc
Q 018870 325 AIEVVQCLMEQHNAIFTDANET 346 (349)
Q Consensus 325 ~i~vV~~LIe~~~~iF~~~~e~ 346 (349)
+..||++||+||+.||.++.+.
T Consensus 201 ~~~vve~LI~~~~~iF~~~~~~ 222 (231)
T 1f7c_A 201 QNIVIEILIENHEKIFNTVPET 222 (231)
T ss_dssp HHHHHHHHHHTHHHHHHSCCC-
T ss_pred HHHHHHHHHHHHHHhCCCCCCC
Confidence 4579999999999999987764
No 13
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=8.8e-34 Score=256.51 Aligned_cols=163 Identities=24% Similarity=0.334 Sum_probs=135.8
Q ss_pred CchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCC-CChhhHHhhHHHHH
Q 018870 135 VPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEG-VNPFDVAALAKYYL 213 (349)
Q Consensus 135 v~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~-~d~~~vA~lLK~fL 213 (349)
-.|++++.++ +..||.+|.+|++||+++|+++|||||++|+..++++|++.||++........ .|+|+||++||.||
T Consensus 4 g~L~~~~~~~--~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~fl 81 (201)
T 2ovj_A 4 GMLADFVSQT--SPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFL 81 (201)
T ss_dssp CCGGGGCCSS--SSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHH
T ss_pred CcHHHHhccc--CCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHH
Confidence 4566766553 68899999999999999999999999999999999999999999876543344 49999999999999
Q ss_pred hcCCCCCCChHHHHHHHHHH------HHHHHHHHHHHhhhh-----------------------hcccchhhhccccccc
Q 018870 214 ASLPEPLTTFELYDEIKGAR------SSIHAMRNTLKKLSN-----------------------MDARSLAMEMAPVIMW 264 (349)
Q Consensus 214 ReLPePLl~~~ly~~~~~~~------~~i~~l~~ll~~LP~-----------------------M~~~NLAivFgPtLl~ 264 (349)
|+||+||+|+++|+.|+++. +++..++.++.+||+ |+++|||+||||+|++
T Consensus 82 reLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~NkM~~~NLa~vf~P~ll~ 161 (201)
T 2ovj_A 82 RNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQSPHTKMDVANLAKVFGPTIVA 161 (201)
T ss_dssp HTSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHTC
T ss_pred HhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHhhhhhcC
Confidence 99999999999999999983 467888999999998 9999999999999999
Q ss_pred cCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHhchhhcCC
Q 018870 265 QKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTD 342 (349)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~~~~iF~~ 342 (349)
++..++.. ..+. .+ ...++.||++||+||+.||..
T Consensus 162 ~~~~~~~~------------------------~~~~----~~---------------~~~~~~vv~~LI~~~~~if~~ 196 (201)
T 2ovj_A 162 HAVPNPDP------------------------VTML----QD---------------IKRQPKVVERLLSLPLEYWSQ 196 (201)
T ss_dssp CSSSSCCH------------------------HHHH----HH---------------HHHHHHHHHHHHHSCHHHHHG
T ss_pred CCCCCCCH------------------------HHHH----HH---------------HHHHHHHHHHHHHhHHHHHHH
Confidence 87643210 0000 00 124578999999999999975
No 14
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=267.39 Aligned_cols=173 Identities=21% Similarity=0.262 Sum_probs=129.9
Q ss_pred CCCCccCCchHHHHhhhc-CCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHH
Q 018870 128 ASTDVFGVPIEVTVQRQQ-YGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVA 206 (349)
Q Consensus 128 ~~~~vFGv~L~~l~~~~~-~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA 206 (349)
.++++||++|++++++.. ....||.+|.+|+.||++ |+++|||||++|+..++++|++.||.+... ....++|+||
T Consensus 60 ~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~--~~~~~~~~va 136 (271)
T 3eap_A 60 IGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC--LSSAPPCDIA 136 (271)
T ss_dssp -CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC-------CCCHHHHH
T ss_pred CCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC--cccccHHHHH
Confidence 356899999999876432 245699999999999986 799999999999999999999999998764 2457999999
Q ss_pred hhHHHHHhcCCCCCCChHHHHHHHHHH-----HHHHHHHHHHHhhhh------------------------hcccchhhh
Q 018870 207 ALAKYYLASLPEPLTTFELYDEIKGAR-----SSIHAMRNTLKKLSN------------------------MDARSLAME 257 (349)
Q Consensus 207 ~lLK~fLReLPePLl~~~ly~~~~~~~-----~~i~~l~~ll~~LP~------------------------M~~~NLAiv 257 (349)
++||.|||+||+||+|+++|+.|+.+. +++..++.++..||. |+++|||+|
T Consensus 137 ~lLK~fLReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAiv 216 (271)
T 3eap_A 137 GLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVI 216 (271)
T ss_dssp HHHHHHHHHSSSCSSCGGGHHHHHHHTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHHHhCCcccCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 999999999999999999999999873 355666677777777 999999999
Q ss_pred ccccccccCCCChhHHhhhhhccccCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCCCCcchhHHHHHHHHHhch
Q 018870 258 MAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLADESEEMDASSAIPLDDGMPIDFGAIEVVQCLMEQHN 337 (349)
Q Consensus 258 FgPtLl~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~vV~~LIe~~~ 337 (349)
|||+|+|+++.... +. ... ..+ ...++.||++||+||+
T Consensus 217 f~P~Ll~~~~~~~~---------------~~---------~~~---~~~---------------~~~~~~vve~LI~~~~ 254 (271)
T 3eap_A 217 FAPNLLQTSEGHEK---------------MS---------SNT---EKK---------------LRLQAAVVQTLIDYAS 254 (271)
T ss_dssp HHHHHHTCCCCCTT---------------CC---------HHH---HHH---------------HHHHHHHHHHHHHTGG
T ss_pred HHhHhccCCCCccc---------------hh---------hhH---HHH---------------HHHHHHHHHHHHHhHH
Confidence 99999998764210 00 000 000 1245789999999999
Q ss_pred hhcCCCcc
Q 018870 338 AIFTDANE 345 (349)
Q Consensus 338 ~iF~~~~e 345 (349)
.||.++++
T Consensus 255 ~IF~vp~~ 262 (271)
T 3eap_A 255 DIGRVPDF 262 (271)
T ss_dssp GTTCCCHH
T ss_pred HHhCCCHH
Confidence 99998865
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=99.97 E-value=6.6e-32 Score=246.74 Aligned_cols=132 Identities=18% Similarity=0.181 Sum_probs=98.7
Q ss_pred CCCccCCchHHHHhhhcCCCCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhh
Q 018870 129 STDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAAL 208 (349)
Q Consensus 129 ~~~vFGv~L~~l~~~~~~~~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~l 208 (349)
..++||++|++++++...+..||.+|.+|+++|+++|+++|||||++|+. |++ .....++ +..|+|+||++
T Consensus 19 ~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~---~~~~~dl-~~~dvh~va~l 89 (214)
T 2xs6_A 19 YFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT---DWSLSDV-DQWDTAALADG 89 (214)
T ss_dssp ------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC---CCCCTTG-GGCCHHHHHHH
T ss_pred CCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh---ccccCCC-ccCCHHHHHHH
Confidence 45799999999998644457899999999999999999999999999998 333 1222333 45899999999
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHH---HHHHHHHHHhhhh------------------------hcccchhhhcccc
Q 018870 209 AKYYLASLPEPLTTFELYDEIKGARSS---IHAMRNTLKKLSN------------------------MDARSLAMEMAPV 261 (349)
Q Consensus 209 LK~fLReLPePLl~~~ly~~~~~~~~~---i~~l~~ll~~LP~------------------------M~~~NLAivFgPt 261 (349)
||.|||+||+||||+++|+.|+++... .+.+..++.+||+ |++.|||+||||+
T Consensus 90 LK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 169 (214)
T 2xs6_A 90 IKSFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPL 169 (214)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGGGSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHhhh
Confidence 999999999999999999999998431 1111144555555 9999999999999
Q ss_pred ccccCCCC
Q 018870 262 IMWQKERK 269 (349)
Q Consensus 262 Ll~~~~~~ 269 (349)
|+|++..+
T Consensus 170 Ll~~~~~~ 177 (214)
T 2xs6_A 170 LLRAPPPP 177 (214)
T ss_dssp HHC-----
T ss_pred hcCCcccc
Confidence 99988753
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.95 E-value=9.2e-29 Score=242.69 Aligned_cols=120 Identities=19% Similarity=0.324 Sum_probs=110.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHHHhcCCCCCCChHHHH
Q 018870 148 KPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYD 227 (349)
Q Consensus 148 ~~VP~ii~~ci~~Le~~gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~fLReLPePLl~~~ly~ 227 (349)
..||.+|.+|++||+++|+++|||||++|+..++++|++.||.+....+. .|+|+||++||.|||+||+||||+++|+
T Consensus 197 ~~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~--~dvh~va~lLK~fLReLPePLi~~~ly~ 274 (366)
T 3qis_A 197 LQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETIP--GSNHSVAEALLIFLEALPEPVICYELYQ 274 (366)
T ss_dssp CSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSCC--SCHHHHHHHHHHHHHHCSSCSSCHHHHH
T ss_pred CCcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCccc--cCHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 47999999999999999999999999999999999999999998766543 4999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh------------------------hcccchhhhccccccccCCCC
Q 018870 228 EIKGARSSIHAMRNTLKKLSN------------------------MDARSLAMEMAPVIMWQKERK 269 (349)
Q Consensus 228 ~~~~~~~~i~~l~~ll~~LP~------------------------M~~~NLAivFgPtLl~~~~~~ 269 (349)
.|+++......++.++..||. |+++|||+||||+|||+++.+
T Consensus 275 ~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~~ 340 (366)
T 3qis_A 275 RCLDSAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNL 340 (366)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC--
T ss_pred HHHHHhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCcc
Confidence 999997777778889999998 999999999999999988654
No 17
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=42.00 E-value=1.8 Score=30.85 Aligned_cols=30 Identities=7% Similarity=0.169 Sum_probs=25.3
Q ss_pred ccccccchhcc--chhhhHHHHHhhhcchhhH
Q 018870 88 FSETKDKVAVG--KIKVEEAAKKTAQKSKTIL 117 (349)
Q Consensus 88 ~~~~~~~i~~~--~~~~ee~~~~~~~k~~~~~ 117 (349)
+..|+.++.++ +++|.+|...+|++|...+
T Consensus 22 C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~~ 53 (61)
T 4b6d_A 22 CVPCGKRIKFGKLSLKCRDCRVVSHPECRDRC 53 (61)
T ss_dssp CTTTCCEECTTCEEEEESSSSCEECGGGGGGS
T ss_pred cccccCEEEEeeEeeECCCCCCeEchhHhhcC
Confidence 67888888775 4899999999999998654
No 18
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=38.80 E-value=2.6 Score=28.67 Aligned_cols=31 Identities=10% Similarity=0.018 Sum_probs=25.5
Q ss_pred hccccccccchhccchhhhHHHHHhhhcchhh
Q 018870 85 RRGFSETKDKVAVGKIKVEEAAKKTAQKSKTI 116 (349)
Q Consensus 85 rk~~~~~~~~i~~~~~~~ee~~~~~~~k~~~~ 116 (349)
...+..|+..|. +|++|+||...+|++|...
T Consensus 14 ~t~C~~C~k~i~-~G~kC~~Ck~~cH~kC~~~ 44 (49)
T 1kbe_A 14 SQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKE 44 (49)
T ss_dssp SCCCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred CcCccccCceeE-CcCCCCCCCCccchhhcCc
Confidence 344788988886 5699999999999999863
No 19
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=33.34 E-value=5.1 Score=29.29 Aligned_cols=30 Identities=3% Similarity=0.094 Sum_probs=26.1
Q ss_pred ccccccchhccchhhhHHHHHhhhcchhhH
Q 018870 88 FSETKDKVAVGKIKVEEAAKKTAQKSKTIL 117 (349)
Q Consensus 88 ~~~~~~~i~~~~~~~ee~~~~~~~k~~~~~ 117 (349)
|..|++.+.-+|++|++|...+|++|....
T Consensus 38 C~~C~~~l~~qG~kC~~C~~~cHkkC~~~V 67 (72)
T 2fnf_X 38 CDLCGREVLRQALRCANCKFTCHSECRSLI 67 (72)
T ss_dssp CTTTSSBCSSCCEECTTSSCEECTGGGGGC
T ss_pred hhhhhHHHHhCcCccCCCCCeechhhhccC
Confidence 688999886688999999999999998653
No 20
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=28.70 E-value=4.9 Score=26.97 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=24.2
Q ss_pred ccccccchhccchhhhHHHHHhhhcchhh
Q 018870 88 FSETKDKVAVGKIKVEEAAKKTAQKSKTI 116 (349)
Q Consensus 88 ~~~~~~~i~~~~~~~ee~~~~~~~k~~~~ 116 (349)
+..|.+.+. +|++|++|...+|++|...
T Consensus 17 C~~C~~~l~-qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 17 CDICQKFLL-NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp CTTSSSEEC-SEEECTTTTCCBCSTTSSS
T ss_pred CCCcccccc-cCCEeCCCCCeEChhHHhh
Confidence 577888877 8999999999999999754
No 21
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=24.46 E-value=6.2 Score=27.59 Aligned_cols=29 Identities=3% Similarity=0.066 Sum_probs=25.1
Q ss_pred ccccccchhccchhhhHHHHHhhhcchhh
Q 018870 88 FSETKDKVAVGKIKVEEAAKKTAQKSKTI 116 (349)
Q Consensus 88 ~~~~~~~i~~~~~~~ee~~~~~~~k~~~~ 116 (349)
+..|++.+.-++++|++|...+|++|...
T Consensus 25 C~~C~~~i~kqg~kC~~C~~~cH~kC~~~ 53 (59)
T 1rfh_A 25 CDLCGREVLRQALRCANCKFTCHSECRSL 53 (59)
T ss_dssp CTTTCSEECSCCEECTTTSCEECHHHHTT
T ss_pred chhcchhhhhCccEeCCCCCeEehhhhhh
Confidence 68899988667899999999999999764
No 22
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=20.62 E-value=78 Score=23.07 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=35.5
Q ss_pred CCCeeeccCCHHHHHHHHHHHhcCCCCCCCCCCChhhHHhhHHHHHhcCCCC
Q 018870 168 SQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEP 219 (349)
Q Consensus 168 ~eGIFR~~G~~~~v~~L~~~~d~~~~~~~~~~~d~~~vA~lLK~fLReLPeP 219 (349)
.+|-|.++|... +.++.+.|+-. ++ ..+..++++++-.-|..+|..
T Consensus 7 ~dg~~~v~G~~~-l~dl~~~l~~~----l~-~~~~~Tl~G~i~~~lg~iP~~ 52 (83)
T 3llb_A 7 PSGDFIVKALTP-VDAFNDFFGSE----FS-DEEFDTVGGLVMSAFGHLPKR 52 (83)
T ss_dssp TTSCEEEETTCB-HHHHHHHHCCC----CC-TTTCSBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEEccCC-HHHHHHHhCCC----CC-CCCCcCHHHHHHHHhCcCCCC
Confidence 468899999875 77788888643 22 246779999999999999864
Done!