BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018873
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 348 bits (892), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 176/305 (57%), Positives = 212/305 (69%), Gaps = 1/305 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+ FYS TCPN + I+R ++ A SD RIGASLIRLHFHDCFVNGCDASILLD+T +
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
I SEK AGPN+NSARGF VVD++K A+E ACPGVVSC+D+L +A+E SV+L+GGPSWT L
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS TAN AN ++P P +L+ + +F VGLN N DLVALSGAHTFGRA+C F
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTN-DLVALSGAHTFGRARCGVF 180
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
++RLFNF + S +TNLD++TPD FDN YF NLQ
Sbjct: 181 NNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSN 240
Query: 267 KGLLQSDQELFSTPGADTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLNC 326
GLLQSDQELFST G+ T AIV SMI MGN+ PLTG+ GEIRL+C
Sbjct: 241 DGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDC 300
Query: 327 RRVNG 331
++VNG
Sbjct: 301 KKVNG 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 339 bits (869), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 172/304 (56%), Positives = 207/304 (68%), Gaps = 1/304 (0%)
Query: 28 LSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTI 87
L+ FY+ TCPN + ++R +++ AF SD RIGASLIRLHFHDCFV GCDASILLDN+ +I
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 88 VSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLL 147
+SEK AGPN NSARGF VVD++K A+E ACPGVVSC D+L +A++ SV+LSGGPSWT L
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 148 GRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFS 207
GRRD+ TAN+ AN ++P P L+ + +F VGLN N DLVALSGAHTFGRA C FS
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTN-DLVALSGAHTFGRATCGVFS 182
Query: 208 DRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIRK 267
+RLFNF GS TNLD++TPD FDN YF NLQ
Sbjct: 183 NRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNN 242
Query: 268 GLLQSDQELFSTPGADTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLNCR 327
GLLQSDQELFST G+ T AIV SMI MGN+ PLTG+ GEIRL+C+
Sbjct: 243 GLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCK 302
Query: 328 RVNG 331
+ NG
Sbjct: 303 KTNG 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 337 bits (865), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 177/308 (57%), Positives = 209/308 (67%), Gaps = 1/308 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY ++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLDNTT+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
+EK A N NSARGF V+D MKAAVE ACP VSCAD+LTIAA++SV L+GGPSW
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS A LAN NLPGP TL +LKD FRNVGLN + DLVALSG HTFG+ QCR
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
DRL+NF N S L + D+ TP +FDNKY+ NL+ +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 267 KGLLQSDQELFSTPGA-DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V V +M RMGN+ PLTG QG+IRLN
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 326 CRRVNGNS 333
CR VN NS
Sbjct: 302 CRVVNSNS 309
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 337 bits (864), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 176/308 (57%), Positives = 209/308 (67%), Gaps = 1/308 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY ++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLDNTT+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
+EK A N NSARGF V+D MKAAVE ACP VSCAD+LTIAA++SV L+GGPSW
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS A LAN NLP P TL +LKD FRNVGLN + DLVALSG HTFG+ QCR+
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSI 181
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
DRL+NF N S L + D+ TP +FDNKY+ NL+ +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 267 KGLLQSDQELFSTPGA-DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V V +M RMGN+ PLTG QG+IRLN
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 326 CRRVNGNS 333
CR VN NS
Sbjct: 302 CRVVNSNS 309
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 336 bits (862), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 176/308 (57%), Positives = 209/308 (67%), Gaps = 1/308 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY ++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLDNTT+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
+EK A N NSARGF V+D MKAAVE ACP VSCAD+LTIAA++SV L+GGPSW
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS A LAN NLP P TL +LKD FRNVGLN + DLVALSG HTFG+ QCR
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
DRL+NF N S L ++D+ TP +FDNKY+ NL+ +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQ 241
Query: 267 KGLLQSDQELFSTPGA-DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V V +M RMGN+ PLTG QG+IRLN
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 326 CRRVNGNS 333
CR VN NS
Sbjct: 302 CRVVNSNS 309
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 336 bits (861), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 176/308 (57%), Positives = 208/308 (67%), Gaps = 1/308 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY ++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLDNTT+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
+EK A N NSARGF V+D MKAAVE ACP VSCAD+LTIAA++SV L+GGPSW
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS A LAN NLP P TL +LKD FRNVGLN + DLVALSG HTFG+ QCR
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
DRL+NF N S L + D+ TP +FDNKY+ NL+ +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 267 KGLLQSDQELFSTPGA-DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V V +M RMGN+ PLTG QG+IRLN
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 326 CRRVNGNS 333
CR VN NS
Sbjct: 301 CRVVNSNS 308
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/308 (57%), Positives = 208/308 (67%), Gaps = 1/308 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY ++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLDNTT+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
+EK A N NSARGF V+D MKAAVE ACP VSCAD+LTIAA++SV L+GGPSW
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS A LAN NLP P TL +LKD FRNVGLN + DLVALSG HTFG+ QCR
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
DRL+NF N S L + D+ TP +FDNKY+ NL+ +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 267 KGLLQSDQELFSTPGA-DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V V +M RMGN+ PLTG QG+IRLN
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 326 CRRVNGNS 333
CR VN NS
Sbjct: 301 CRVVNSNS 308
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 335 bits (858), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 176/308 (57%), Positives = 208/308 (67%), Gaps = 1/308 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY ++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLDNTT+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
+EK A N NSARGF V+D MKAAVE ACP VSCAD+LTIAA++SV L+GGPSW
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS A LAN NLP P TL +LKD FRNVGLN + DLVALSG HTFG+ QCR
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
DRL+NF N S L + D+ TP +FDNKY+ NL+ +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 267 KGLLQSDQELFSTPGA-DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V V +M RMGN+ PLTG QG+IRLN
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 326 CRRVNGNS 333
CR VN NS
Sbjct: 302 CRVVNSNS 309
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 334 bits (856), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 175/308 (56%), Positives = 208/308 (67%), Gaps = 1/308 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY ++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLDNTT+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
+EK A N NSARGF V+D MKAAVE ACP VSCAD+LTIAA++SV L+GGPSW
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS A LAN NLP P TL +LKD FRNVGLN + DLVALSG H+FG+ QCR
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFI 180
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
DRL+NF N S L + D+ TP +FDNKY+ NL+ +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 267 KGLLQSDQELFSTPGA-DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V V +M RMGN+ PLTG QG+IRLN
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 326 CRRVNGNS 333
CR VN NS
Sbjct: 301 CRVVNSNS 308
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 334 bits (856), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 175/307 (57%), Positives = 207/307 (67%), Gaps = 1/307 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY ++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLDNTT+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
+EK A N NSARGF V+D MKAAVE ACP VSCAD+LTIAA++SV L+GGPSW
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS A LAN NLP P TL +LKD FRNVGLN + DLVALSG HTFG+ QCR
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
DRL+NF N S L + D+ TP +FDNKY+ NL+ +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 267 KGLLQSDQELFSTPGA-DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V V +M RMGN+ PLTG QG+IRLN
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 326 CRRVNGN 332
CR VN N
Sbjct: 302 CRVVNSN 308
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 332 bits (852), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 175/308 (56%), Positives = 207/308 (67%), Gaps = 1/308 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY ++CPNV+NI+R+ + N SD RI AS++RLHF DCFVNGCDASILLDNTT+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
+EK A N NSARGF V+D MKAAVE ACP VSCAD+LTIAA++SV L+GGPSW
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS A LAN NLP P TL +LKD FRNVGLN + DLVALSG HTFG+ QCR
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
DRL+NF N S L + D+ TP +FDNKY+ NL+ +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 267 KGLLQSDQELFSTPGA-DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V V +M RMGN+ PLTG QG+IRLN
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 326 CRRVNGNS 333
CR VN NS
Sbjct: 302 CRVVNSNS 309
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 332 bits (851), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/305 (57%), Positives = 206/305 (67%), Gaps = 1/305 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY ++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLDNTT+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
+EK A N NSARGF V+D MKAAVE ACP VSCAD+LTIAA++SV L+GGPSW
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS A LAN NLP P TL +LKD FRNVGLN + DLVALSG HTFG+ QCR
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
DRL+NF N S L + D+ TP +FDNKY+ NL+ +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 267 KGLLQSDQELFSTPGA-DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V V +M RMGN+ PLTG QG+IRLN
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 326 CRRVN 330
CR VN
Sbjct: 301 CRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 330 bits (846), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 173/305 (56%), Positives = 205/305 (67%), Gaps = 1/305 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY ++CPNV+NI+R+ + N SD RI AS++RLHFHDCFVNGCDASILLDNTT+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
+EK A N NSARGF V+D MKAAVE ACP VSCAD+LTIAA++SV L+GGPSW
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS A LAN NLP P TL +LKD FRNVGLN + DLVAL G HTFG+ QCR
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFI 180
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
DRL+NF N S L + D+ TP +FDNKY+ NL+ +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 267 KGLLQSDQELFSTPGA-DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V V +M RMGN+ PLTG QG+IRLN
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 326 CRRVN 330
CR VN
Sbjct: 301 CRVVN 305
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 330 bits (845), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/308 (56%), Positives = 206/308 (66%), Gaps = 1/308 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY ++CPNV+NI+R+ + N SD RI AS++ LHF DCFVNGCDASILLDNTT+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
+EK A N NSARGF V+D MKAAVE ACP VSCAD+LTIAA++SV L+GGPSW
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS A LAN NLP P TL +LKD FRNVGLN + DLVALSG HTFG+ QCR
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
DRL+NF N S L + D+ TP +FDNKY+ NL+ +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 267 KGLLQSDQELFSTPGA-DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLN 325
KGL+QSDQELFS+P A DT +V V +M RMGN+ PLTG QG+IRLN
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 326 CRRVNGNS 333
CR VN NS
Sbjct: 301 CRVVNSNS 308
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 305 bits (781), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 171/305 (56%), Positives = 200/305 (65%), Gaps = 1/305 (0%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QL+P FY TCPN+ I+ V+ +A +D RIGASL+RLHFHDCFV GCD S+LL+NT T
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
I SE+ A PNINS RG +VV+D+K AVE +CP VSCADIL IAAE + L GGP W
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGRRDS TANRTLAN+NLP P LT+LK F GLN DLV LSG HTFGRA+C TF
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLN-TLDLVTLSGGHTFGRARCSTF 179
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
+RL+NF G LTNLD++TPD FDN+Y+ NL
Sbjct: 180 INRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQL 239
Query: 267 KGLLQSDQELFSTPGADTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLNC 326
GLLQSDQELFSTPGADT IVN +SMI+MGN+ LTG++GEIRL C
Sbjct: 240 NGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQC 299
Query: 327 RRVNG 331
VNG
Sbjct: 300 NFVNG 304
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 155/306 (50%), Positives = 186/306 (60%), Gaps = 9/306 (2%)
Query: 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTT 86
QLSP Y+ +CPN+ I+R+ + A ++IR+ ASLIRLHFHDCFVNGCDAS+LLD
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGAD- 59
Query: 87 IVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNL 146
SEK A PNINSARGFEV+D +KAAVE ACPGVVSCADILT+AA +SV LSGGP W
Sbjct: 60 --SEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVA 117
Query: 147 LGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTF 206
LGR+D AN+ AN NLP P L + +F V LN D+VALSGAHTFG+A+C F
Sbjct: 118 LGRKDGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNIT-DVVALSGAHTFGQAKCAVF 175
Query: 207 SDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIR 266
S+RLFNF N ++ LD +T D FDN YF NL
Sbjct: 176 SNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEG 235
Query: 267 KGLLQSDQELFSTPGA--DTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRL 324
KGLL SDQ LFS+ A T +V +MIRMGN+ G GE+R
Sbjct: 236 KGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRT 293
Query: 325 NCRRVN 330
NCR +N
Sbjct: 294 NCRVIN 299
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 269 bits (688), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 181/303 (59%), Gaps = 10/303 (3%)
Query: 28 LSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTI 87
LS FY++ CPN + I+ + +A + R+GASL+RLHFHDCFV GCDAS+LLD+T+
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 88 VSEKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLL 147
EK AGPN NS RGFEV+D +K+ VE CPGVVSCADIL +AA +SV GG SW LL
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 148 GRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFS 207
GRRDS TA+ + AN +LP P L+ L F N G +LV LSGAHT G+AQC F
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTK-ELVTLSGAHTIGQAQCTAFR 180
Query: 208 DRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKYFFNLQIRK 267
R++N + L+ DVTTP+ FDN Y+ NL+ +K
Sbjct: 181 TRIYN-------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKK 233
Query: 268 GLLQSDQELFSTPGADTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLNCR 327
GLL SDQ+LF+ G T + V +MI+MGNL PLTG G+IR NCR
Sbjct: 234 GLLHSDQQLFN--GVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCR 291
Query: 328 RVN 330
+ N
Sbjct: 292 KTN 294
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 124/307 (40%), Positives = 165/307 (53%), Gaps = 12/307 (3%)
Query: 23 PAQAQLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLD 82
P LS FY TCP +I+RE ++ A DI + A L+RLHFHDCFV GCDAS+LLD
Sbjct: 4 PVAPGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLD 63
Query: 83 NTTTIVSEKFAGPNIN-SARGFEVVDDMKAAVERACPG-VVSCADILTIAAEESVALSGG 140
+ T E+ A PN+ F+ V+D++ +ER C G VVSC+DIL +AA +SV +SGG
Sbjct: 64 GSATGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGG 123
Query: 141 PSWTNLLGRRDSRT-ANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFG 199
P + LGRRDSR+ A+ +LPGP++ + L D DLV +SG HT G
Sbjct: 124 PDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLL-ALLGRLGLDATDLVTISGGHTIG 182
Query: 200 RAQCRTFSDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXXXNGSVLTNLDVTTPDLFDNKY 259
A C +F DRLF T LDV TP++FDNKY
Sbjct: 183 LAHCSSFEDRLF------PRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVRTPNVFDNKY 236
Query: 260 FFNLQIRKGLLQSDQELFSTPGADTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQ 319
+ +L R+GL SDQ+LF+ A T IV +S+ +MG +R T +Q
Sbjct: 237 YIDLVNREGLFVSDQDLFTN--AITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQ 294
Query: 320 GEIRLNC 326
GE+R NC
Sbjct: 295 GEVRRNC 301
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 164/301 (54%), Gaps = 5/301 (1%)
Query: 32 FYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEK 91
FY+++CP +++++ + AF ++ I LIR+HFHDCFV GCDAS+LLD+T +EK
Sbjct: 6 FYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEK 65
Query: 92 FAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRD 151
A PN S RGFEV+ K+AVE ACP VSCADIL AA +S L+G ++ GRRD
Sbjct: 66 DAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRD 125
Query: 152 SRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLF 211
+ + AN +P P T+L + F N L + ++V LSGAH+ G A C +F++RL+
Sbjct: 126 GTVSLASEANAQIPSPLFNATQLINSFANKTLTAD-EMVTLSGAHSIGVAHCSSFTNRLY 184
Query: 212 NFXXXXXXXXXXXXXXXXXXXXXXXXXXN--GSVLTNLDVTTPDLFDNKYFFNLQIRKGL 269
NF + +LD+ TP + DN Y+ +Q+ GL
Sbjct: 185 NFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLGL 244
Query: 270 LQSDQELFSTPGADTAAIVNVXXXXXXXXXXXXVISMIRMGNLRPLTGNQGEIRLNCRRV 329
L SDQ L + A+ +A V +M++MG + LTG QGEIR NC V
Sbjct: 245 LTSDQALVTE--ANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVV 302
Query: 330 N 330
N
Sbjct: 303 N 303
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 34 SSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFA 93
S P +R +++ + +G SLIRL +H+ C D + S +F
Sbjct: 2 SEEPPFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDC---FKKDGSPNSASMRFK 58
Query: 94 GPNINSA-RGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDS 152
+ + +G ++ +++ P + S AD+ +AA ++ GGP+ GR D+
Sbjct: 59 PECLYAGNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDA 117
Query: 153 RTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202
+ + + LP + T + +++ FR +G ND + VAL GAHT G
Sbjct: 118 KDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQ-ETVALIGAHTCGETH 166
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 34 SSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFA 93
S P +R +++ + +G SLIRL +H+ C D + S +F
Sbjct: 2 SEEPPFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDC---FKKDGSPNSASMRFK 58
Query: 94 GPNINSA-RGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDS 152
+ + +G ++ +++ P + S AD+ +AA ++ GGP+ GR D+
Sbjct: 59 PECLYAGNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDA 117
Query: 153 RTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202
+ + + LP + T + +++ FR +G ND + VAL GAHT G
Sbjct: 118 KDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQ-ETVALIGAHTCGECH 166
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 34 SSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFA 93
S P +R +++ + +G SLIRL +H+ C D + S +F
Sbjct: 1 SEEPPFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDC---FKKDGSPNSASMRFK 57
Query: 94 GPNINSA-RGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDS 152
+ + +G ++ +++ P + S AD+ +AA ++ GGP+ GR D+
Sbjct: 58 PECLYAGNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDA 116
Query: 153 RTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202
+ + + LP + T + +++ FR +G ND + VAL GAHT G
Sbjct: 117 KDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQ-ETVALIGAHTCGECH 165
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 30/172 (17%)
Query: 44 IREVLKNAFLSDIRIGASLIRLHFHDCFV-----------NGCDASILLDNTTTIVSEKF 92
I+E+LK F I ++RL +HD G + S+ D E
Sbjct: 15 IKELLKTKFCHPI-----MVRLGWHDAGTYNKNIEEWPQRGGANGSLRFD------VELK 63
Query: 93 AGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDS 152
G N ++ +K V+ AD+ +A+ ++ +GGP GR D
Sbjct: 64 HGANAGLVNALNLLKPIKDKYSG-----VTYADLFQLASATAIEEAGGPKIPMKYGRVDV 118
Query: 153 RTANRTLANENLP--GPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202
+ LP GP + L+D F +GLND ++VALSGAHT GR++
Sbjct: 119 TEPEQCPEEGRLPDAGPPSPAQHLRDVFYRMGLNDK-EIVALSGAHTLGRSR 169
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 33/156 (21%)
Query: 62 LIRLHFHDCFV----------NGCDASILLDNTTTIVSEKFAGPNINSARGFE-VVDDMK 110
+IRL FHD G D S+LL T PN ++ G + V+++
Sbjct: 40 VIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVE--------PNFSANNGIDDSVNNLI 91
Query: 111 AAVERACPGVVSCADILTIAAEESVALS---GGPSWTNLLGRRDSRTANRTLANEN--LP 165
+++ +S AD++ A +VALS G P L GR N+T+A + +P
Sbjct: 92 PFMQKH--NTISAADLVQFAG--AVALSNCPGAPRLEFLAGR-----PNKTIAAVDGLIP 142
Query: 166 GPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRA 201
P +++T++ RF + G F++V+L +H+ RA
Sbjct: 143 EPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARA 178
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 33/156 (21%)
Query: 62 LIRLHFHDCFV----------NGCDASILLDNTTTIVSEKFAGPNINSARGFE-VVDDMK 110
+IRL FHD G D S+LL T PN ++ G + V+++
Sbjct: 40 VIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVE--------PNFSANNGIDDSVNNLI 91
Query: 111 AAVERACPGVVSCADILTIAAEESVALS---GGPSWTNLLGRRDSRTANRTLANEN--LP 165
+++ +S AD++ A +VALS G P L GR N+T+A + +P
Sbjct: 92 PFMQKH--NTISAADLVQFAG--AVALSNCPGAPRLEFLAGR-----PNKTIAAVDGLIP 142
Query: 166 GPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRA 201
P +++T++ RF + G F++V+L +H+ RA
Sbjct: 143 EPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARA 178
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 33/156 (21%)
Query: 62 LIRLHFHDCFV----------NGCDASILLDNTTTIVSEKFAGPNINSARGFE-VVDDMK 110
+IRL FHD G D S+LL T PN ++ G + V+++
Sbjct: 40 VIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVE--------PNFSANNGIDDSVNNLI 91
Query: 111 AAVERACPGVVSCADILTIAAEESVALS---GGPSWTNLLGRRDSRTANRTLANEN--LP 165
+++ +S AD++ A +VALS G P L GR N+T+A + +P
Sbjct: 92 PFMQKH--NTISAADLVQFAG--AVALSNCPGAPRLEFLAGR-----PNKTIAAVDGLIP 142
Query: 166 GPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRA 201
P +++T++ RF + G F++V+L +H+ RA
Sbjct: 143 EPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARA 178
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 120 VVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRF- 178
+VS AD +A +V ++GGP GR D LP L+D F
Sbjct: 89 IVSYADFYQLAGVVAVEITGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 179 RNVGLNDNFDLVALSGAHTFGRAQ 202
+ +GL+D D+VALSG HT G A
Sbjct: 146 KAMGLSDQ-DIVALSGGHTIGAAH 168
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 45/166 (27%)
Query: 120 VVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRF- 178
++S AD +A +V ++GGP GR D LP L+D F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 179 RNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXX 238
+ +GL D D+VALSG HT G A
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAH------------------------------------ 180
Query: 239 XNGSVLTNLDVTTPDLFDNKYFFNL--QIRKGLLQ--SDQELFSTP 280
S + P +FDN YF L ++GLLQ SD+ L S P
Sbjct: 181 KEASGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP 226
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 45/166 (27%)
Query: 120 VVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRF- 178
++S AD +A +V ++GGP GR D LP L+D F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 179 RNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXX 238
+ +GL D D+VALSG HT G A
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKER--------------------------------- 183
Query: 239 XNGSVLTNLDVTTPDLFDNKYFFNL--QIRKGLLQ--SDQELFSTP 280
S + P +FDN YF L ++GLLQ SD+ L S P
Sbjct: 184 ---SGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP 226
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 45/166 (27%)
Query: 120 VVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRF- 178
++S AD +A +V ++GGP GR D LP L+D F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 179 RNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXX 238
+ +GL D D+VALSG HT G A
Sbjct: 146 KAMGLTDQ-DIVALSGGHTIGAAHKER--------------------------------- 171
Query: 239 XNGSVLTNLDVTTPDLFDNKYFFNL--QIRKGLLQ--SDQELFSTP 280
S + P +FDN YF L ++GLLQ SD+ L S P
Sbjct: 172 ---SGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP 214
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 45/166 (27%)
Query: 120 VVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRF- 178
++S AD +A +V ++GGP GR D LP L+D F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 179 RNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXX 238
+ +GL D D+VALSG HT G A
Sbjct: 146 KAMGLTDQ-DIVALSGGHTIGAAHKER--------------------------------- 171
Query: 239 XNGSVLTNLDVTTPDLFDNKYFFNL--QIRKGLLQ--SDQELFSTP 280
S + P +FDN YF L ++GLLQ SD+ L S P
Sbjct: 172 ---SGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP 214
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 45/166 (27%)
Query: 120 VVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRF- 178
++S AD +A +V ++GGP GR D LP L+D F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 179 RNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXX 238
+ +GL D D+VALSG HT G A
Sbjct: 146 KAMGLTDQ-DIVALSGGHTIGAAHKER--------------------------------- 171
Query: 239 XNGSVLTNLDVTTPDLFDNKYFFNL--QIRKGLLQ--SDQELFSTP 280
S + P +FDN YF L ++GLLQ SD+ L S P
Sbjct: 172 ---SGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP 214
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 45/166 (27%)
Query: 120 VVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRF- 178
++S AD +A +V ++GGP GR D LP L+D F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 179 RNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXX 238
+ +GL D D+VALSG HT G A
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKER--------------------------------- 183
Query: 239 XNGSVLTNLDVTTPDLFDNKYFFNL--QIRKGLLQ--SDQELFSTP 280
S + P +FDN YF L ++GLLQ SD+ L S P
Sbjct: 184 ---SGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP 226
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 45/166 (27%)
Query: 120 VVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRF- 178
++S AD +A +V ++GGP GR D LP L+D F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 179 RNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXX 238
+ +GL D D+VALSG HT G A
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKER--------------------------------- 183
Query: 239 XNGSVLTNLDVTTPDLFDNKYFFNL--QIRKGLLQ--SDQELFSTP 280
S + P +FDN YF L ++GLLQ SD+ L S P
Sbjct: 184 ---SGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP 226
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 45/166 (27%)
Query: 120 VVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRF- 178
++S AD +A +V ++GGP GR D LP L+D F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 179 RNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXX 238
+ +GL D D+VALSG HT G A
Sbjct: 146 KAMGLTDQ-DIVALSGGHTIGAAHKER--------------------------------- 171
Query: 239 XNGSVLTNLDVTTPDLFDNKYFFNL--QIRKGLLQ--SDQELFSTP 280
S + P +FDN YF L ++GLLQ SD+ L S P
Sbjct: 172 ---SGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP 214
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 45/166 (27%)
Query: 120 VVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRF- 178
++S AD +A +V ++GGP GR D LP L+D F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 179 RNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXX 238
+ +GL D D+VALSG HT G A
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKER--------------------------------- 183
Query: 239 XNGSVLTNLDVTTPDLFDNKYFFNL--QIRKGLLQ--SDQELFSTP 280
S + P +FDN YF L ++GLLQ SD+ L S P
Sbjct: 184 ---SGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP 226
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 45/166 (27%)
Query: 120 VVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRF- 178
++S AD +A +V ++GGP GR D LP L+D F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 179 RNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXX 238
+ +GL D D+VALSG HT G A
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKER--------------------------------- 183
Query: 239 XNGSVLTNLDVTTPDLFDNKYFFNL--QIRKGLLQ--SDQELFSTP 280
S + P +FDN YF L ++GLLQ SD+ L S P
Sbjct: 184 ---SGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP 226
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 45/166 (27%)
Query: 120 VVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRF- 178
++S AD +A +V ++GGP GR D LP L+D F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFG 157
Query: 179 RNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFXXXXXXXXXXXXXXXXXXXXXXXXX 238
+ +GL D D+VALSG HT G A
Sbjct: 158 KAMGLTDQ-DIVALSGGHTIGAAHKER--------------------------------- 183
Query: 239 XNGSVLTNLDVTTPDLFDNKYFFNL--QIRKGLLQ--SDQELFSTP 280
S + P +FDN YF L ++GLLQ SD+ L S P
Sbjct: 184 ---SGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDP 226
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VALSGAHT G+ +
Sbjct: 149 KDADYVRTFFQRLNMNDR-EVVALSGAHTLGKTHLK 183
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAHT G+ +
Sbjct: 149 KDADYVRTFFQRLNMNDR-EVVALMGAHTLGKTHLK 183
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAHT G+ +
Sbjct: 149 KDADYVRTFFQRLNMNDR-EVVALMGAHTLGKTHLK 183
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAHT G+ +
Sbjct: 149 KDADYVRTFFQRLNMNDR-EVVALMGAHTLGKTHLK 183
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL FH ++G DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVRLAFH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAHT G+ +
Sbjct: 149 KDADYVRTFFQRLNMNDR-EVVALMGAHTLGKTHLK 183
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 37 IGYGPELVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 90
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 91 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 145
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ + +
Sbjct: 146 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTELK 180
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 37 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 90
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 91 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 145
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 146 KDAGYVRTFFQRLNMNDR-EVVALKGAHALGKTHLK 180
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 37 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 90
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 91 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 145
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 146 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 40 IGYGDDLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 37 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 90
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 91 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 145
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 146 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 37 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 90
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 91 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 145
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 146 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 37 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 90
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 91 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 145
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 146 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 37 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 90
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 91 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 145
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 146 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 43 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 96
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 97 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 151
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 152 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 186
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 19/159 (11%)
Query: 53 LSDIRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEV 105
+++ + G L+RL +H D DNT T ++F P N GF+
Sbjct: 30 IAEKKCGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKF 84
Query: 106 VDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLP 165
++ + + P +S D+ ++ +V GP GR D+ + T N LP
Sbjct: 85 LE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLP 138
Query: 166 GPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
+ ++ F+ + +ND ++VAL GAH G+ +
Sbjct: 139 DADKDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 176
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 38 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 91
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 92 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 146
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 147 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 181
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 38 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 91
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 92 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 146
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 147 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 181
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 37 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 90
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 91 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 145
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 146 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 43 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 96
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 97 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 151
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 152 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 186
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 43 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 96
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 97 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 151
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 152 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 186
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 43 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 96
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 97 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 151
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 152 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 186
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 37 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 90
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 91 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 145
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 146 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 37 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 90
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 91 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 145
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 146 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 37 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 90
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 91 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 145
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 146 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 37 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 90
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 91 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 145
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 146 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDYD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPWNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 39 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 92
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 93 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 147
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 148 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 182
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 39 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 92
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 93 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 147
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 148 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 182
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H ++G DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDMD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L+RL +H D DNT T ++F P N GF+ ++
Sbjct: 40 IGYGPVLVRLAWHTS--GTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 93
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 94 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 148
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 149 KDADYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 56 IRIGASLIRLHFHDCFVNGCDASILLDNT------TTIVSEKFAGP-NINSARGFEVVDD 108
I G L++L +H ++G DNT T ++F P N GF+ ++
Sbjct: 42 IGYGPVLVKLAWH---ISGTWDK--HDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE- 95
Query: 109 MKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPN 168
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 96 ---PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDAD 150
Query: 169 NTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 151 KDAGYVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 113 VERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLT 172
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 95 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAD 152
Query: 173 RLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 153 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 183
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 113 VERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLT 172
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 92 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 149
Query: 173 RLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 150 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 180
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 113 VERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLT 172
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 173 RLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 113 VERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLT 172
+ + P +S D+ ++ +V GP GR D+ + T N LP +
Sbjct: 97 IHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAG 154
Query: 173 RLKDRFRNVGLNDNFDLVALSGAHTFGRAQCR 204
++ F+ + +ND ++VAL GAH G+ +
Sbjct: 155 YVRTFFQRLNMNDR-EVVALMGAHALGKTHLK 185
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 121 VSCADILTIAAEESVA-LSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRFR 179
VS D++ AA ++ G P L GR +S + +PGP NT+T + DRF
Sbjct: 111 VSFGDLIQFAAAVGMSNCPGSPRLEFLTGRSNSSQPSPPSL---IPGPGNTVTAILDRFG 167
Query: 180 NVGLNDNFDLVALSGAHTFGRAQ 202
+ G + + ++V L AH+ +
Sbjct: 168 DAGFSPD-EVVDLLAAHSLASQE 189
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 164 LPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202
+PGP NT+T + DR + G + + ++V L AH+ +
Sbjct: 153 IPGPGNTVTAILDRMGDAGFSPD-EVVDLLAAHSLASQE 190
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 164 LPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202
+PGP NT+T + DR + G + + ++V L AH+ +
Sbjct: 152 IPGPGNTVTAILDRMGDAGFSPD-EVVDLLAAHSLASQE 189
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 164 LPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202
+PGP NT+T + DR + G + + ++V L AH+ +
Sbjct: 152 IPGPGNTVTAILDRMGDAGFSPD-EVVDLLAAHSLASQE 189
>pdb|1LGA|A Chain A, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LGA|B Chain B, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LLP|A Chain A, Lignin Peroxidase (isozyme H2) Pi 4.15
Length = 343
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 104 EVVDDMKAAVERACPGVVSCADILTIAAEESVALS---GGPSWTNLLGRRDSRTANRTLA 160
EVV K V++ V+ D + A +VALS G P GR + A +
Sbjct: 89 EVVAMQKPFVQKHG---VTPGDFIAFAG--AVALSNCPGAPQMNFFTGR---KPATQPAP 140
Query: 161 NENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHT 197
+ +P P +T+ ++ R + G D +LV + AH+
Sbjct: 141 DGLVPEPFHTVDQIIARVNDAGEFDELELVWMLSAHS 177
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGR 200
P P ++D F + +ND + ++G HTFG+
Sbjct: 214 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 249
>pdb|2CIV|A Chain A, Chloroperoxidase Bromide Complex
pdb|2CIW|A Chain A, Chloroperoxidase Iodide Complex
pdb|2CIX|A Chain A, Chloroperoxidase Complexed With Cyclopentanedione
pdb|2CIY|A Chain A, Chloroperoxidase Complexed With Cyanide And Dmso
pdb|2CIZ|A Chain A, Chloroperoxidase Complexed With Acetate
pdb|2CJ0|A Chain A, Chloroperoxidase Complexed With Nitrate
pdb|2CJ1|A Chain A, Chloroperoxidase Complexed With Formate (Ethylene Glycol
Cryoprotectant)
pdb|2CJ2|A Chain A, Chloroperoxidase Complexed With Formate (Sugar
Cryoprotectant)
pdb|2J18|A Chain A, Chloroperoxidase Mixture Of Ferric And Ferrous States
(Low Dose Data Set)
pdb|2J19|A Chain A, Ferrous Chloroperoxidase (High Dose Data Set)
pdb|2J5M|A Chain A, Structure Of Chloroperoxidase Compound 0
pdb|1CPO|A Chain A, Chloroperoxidase
pdb|2CPO|A Chain A, Chloroperoxidase
Length = 299
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 43 IIREVLKNAFLSDIRIGASLIRLHFHDCFV 72
I RE L+NAFL+ + I S+I L + FV
Sbjct: 49 ISRETLQNAFLNHMGIANSVIELALTNAFV 78
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGR 200
P P ++D F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|1B80|A Chain A, Rec. Lignin Peroxidase H8 Oxidatively Processed
pdb|1B80|B Chain B, Rec. Lignin Peroxidase H8 Oxidatively Processed
Length = 351
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 104 EVVDDMKAAVERACPGVVSCADILTIAAEESVALS---GGPSWTNLLGRRDSRTANRTLA 160
E+V K V++ V+ D + A +VALS G P GR A +
Sbjct: 96 EIVKLQKPFVQKHG---VTPGDFIAFAG--AVALSNCPGAPQMNFFTGRA---PATQPAP 147
Query: 161 NENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHT 197
+ +P P +T+ ++ +R + G D +LV + AH+
Sbjct: 148 DGLVPEPFHTVDQIINRVNDAGEFDELELVXMLSAHS 184
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGR 200
P P ++D F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGR 200
P P ++D F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGR 200
P P ++D F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGR 200
P P ++D F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGR 200
P P ++D F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202
P P + +++ F +G+ND + ++G H FG+
Sbjct: 261 PDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTH 298
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGR 200
P P ++D F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGR 200
P P ++D F + +ND + ++G HTFG+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202
P P + ++ F + +ND ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVH 265
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202
P P + ++ F + +ND ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVH 265
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202
P P + ++ F + +ND ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVH 265
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202
P P + ++ F + +ND ++G HTFG+
Sbjct: 228 PDPEASAKNIRQTFDRMAMNDKETAALIAGGHTFGKVH 265
>pdb|2CCD|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCD|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSD 208
P P +++ FR + +ND + G HTFG+ +D
Sbjct: 239 PDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTHGAGPAD 282
>pdb|1SJ2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
pdb|1SJ2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
Length = 743
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSD 208
P P +++ FR + +ND + G HTFG+ +D
Sbjct: 242 PDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTHGAGPAD 285
>pdb|2CCA|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCA|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 165 PGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSD 208
P P +++ FR + +ND + G HTFG+ +D
Sbjct: 239 PDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTHGAGPAD 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,330,140
Number of Sequences: 62578
Number of extensions: 286233
Number of successful extensions: 653
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 127
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)