Query 018873
Match_columns 349
No_of_seqs 183 out of 1525
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:45:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1E-105 3E-110 774.4 25.4 300 23-330 20-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1.5E-99 3E-104 729.9 25.1 298 27-329 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 2.2E-71 4.7E-76 517.5 12.0 229 44-294 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 7.1E-69 1.5E-73 512.1 21.4 232 42-327 15-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 4.3E-66 9.4E-71 487.3 20.3 231 39-316 11-252 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.4E-64 3E-69 475.8 20.6 232 30-315 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 7.9E-63 1.7E-67 478.2 22.2 238 40-332 16-289 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 1.5E-62 3.1E-67 461.5 20.4 222 40-315 16-248 (251)
9 cd00314 plant_peroxidase_like 100.0 8.6E-59 1.9E-63 438.2 18.0 224 43-311 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 8.4E-56 1.8E-60 435.8 18.5 273 28-320 29-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 2.8E-53 6E-58 441.4 19.7 270 28-317 39-405 (716)
12 PRK15061 catalase/hydroperoxid 100.0 9.5E-50 2.1E-54 413.0 19.7 273 28-320 41-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 6.3E-49 1.4E-53 369.2 11.0 218 45-311 28-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 1.6E-38 3.4E-43 302.3 17.2 221 46-313 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 2.3E-33 4.9E-38 292.8 16.5 220 43-313 429-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 9.5E-33 2.1E-37 286.7 17.8 221 46-313 442-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 5.9E-31 1.3E-35 262.5 16.9 251 42-311 70-414 (730)
18 COG0376 KatG Catalase (peroxid 99.2 1E-10 2.2E-15 118.5 12.3 217 46-313 452-725 (730)
19 PTZ00411 transaldolase-like pr 78.3 15 0.00032 36.7 9.4 132 138-303 180-327 (333)
20 PRK12346 transaldolase A; Prov 63.9 35 0.00077 33.8 8.3 66 120-186 149-220 (316)
21 PRK05269 transaldolase B; Prov 63.7 40 0.00086 33.4 8.6 50 137-186 169-221 (318)
22 PRK12309 transaldolase/EF-hand 61.9 77 0.0017 32.3 10.5 48 138-186 174-225 (391)
23 TIGR00874 talAB transaldolase. 60.2 64 0.0014 32.0 9.4 128 137-300 167-311 (317)
24 PF07172 GRP: Glycine rich pro 59.7 6 0.00013 32.3 1.8 28 1-28 1-28 (95)
25 PF11895 DUF3415: Domain of un 55.2 12 0.00026 29.7 2.7 31 297-331 2-32 (80)
26 COG3763 Uncharacterized protei 50.8 25 0.00055 27.2 3.7 28 43-70 24-51 (71)
27 cd00957 Transaldolase_TalAB Tr 47.7 61 0.0013 32.1 6.9 65 121-186 149-219 (313)
28 PRK01844 hypothetical protein; 26.0 1.1E+02 0.0025 23.8 3.8 28 43-70 24-51 (72)
29 KOG0400 40S ribosomal protein 24.7 41 0.00089 29.3 1.3 33 169-202 31-64 (151)
30 PRK00523 hypothetical protein; 22.7 1.5E+02 0.0033 23.1 4.0 28 43-70 25-52 (72)
31 PF06163 DUF977: Bacterial pro 20.6 1.3E+02 0.0028 26.0 3.5 24 172-196 15-39 (127)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.3e-105 Score=774.36 Aligned_cols=300 Identities=44% Similarity=0.777 Sum_probs=283.8
Q ss_pred ccccCCCcccccCCChhHHHHHHHHHHHHHhhCccchhhhHHhhhccccccCCCcceeccCCCCccccccCCCCCCCchh
Q 018873 23 PAQAQLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFAGPNINSARG 102 (349)
Q Consensus 23 ~~~~~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~aa~lLRL~FHDcfv~GcDgSill~~~~~~~~E~~~~~N~~~~~g 102 (349)
.+.++|+++||++|||++|+||++.|++.+.++|+++|++|||+||||||+||||||||+++ ..||++++|. +++|
T Consensus 20 ~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~-~l~G 95 (324)
T PLN03030 20 VQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNL-LLRG 95 (324)
T ss_pred chhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCc-Ccch
Confidence 34567999999999999999999999999999999999999999999999999999999964 3799999998 7899
Q ss_pred hHHHHHHHHHHHhhCCCCCcHHHHHHHhhhhHHhhcCCCcceeccCCCCCCCcccccccCCCCCCCCCHHHHHHHHHHcC
Q 018873 103 FEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVG 182 (349)
Q Consensus 103 ~~~I~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~G 182 (349)
|++|+.||++||++||++|||||||||||||||+++|||.|+|++||||+++|...++. +||.|+.++++|++.|+++|
T Consensus 96 f~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~G 174 (324)
T PLN03030 96 YDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKG 174 (324)
T ss_pred HHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999877664 89999999999999999999
Q ss_pred CCCccchhhhccccccccccccccccccccCCCCC-CCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCCccChHHHH
Q 018873 183 LNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNNTG-NPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDLFDNKYFF 261 (349)
Q Consensus 183 lt~~~e~VaLsGaHTiG~~hc~~f~~Rl~~f~g~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~ 261 (349)
|+.+ |||+||||||||++||.+|.+|||||+|++ .+||+||+.|+..|+..||..++..+.+++|+.||.+|||+||+
T Consensus 175 l~~~-DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~ 253 (324)
T PLN03030 175 LNTQ-DLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFS 253 (324)
T ss_pred CCHH-HheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHH
Confidence 9999 999999999999999999999999999875 58999999999999999996333334678999999999999999
Q ss_pred HhhhcccccccchhhccCCccchHHHHHHhhhcH----HHHHHHHHHHHHHhhcCCCCCCCCCcccccccccc
Q 018873 262 NLQIRKGLLQSDQELFSTPGADTAAIVNVFSSNQ----AAFFQSFVISMIRMGNLRPLTGNQGEIRLNCRRVN 330 (349)
Q Consensus 262 ~l~~~~glL~SD~~L~~d~~a~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~n 330 (349)
||+.++|+|+|||+|+.|+ +|+++|++||.|+ +.|+++|++||+|||+|+|+||.+||||++|+.+|
T Consensus 254 nll~~rGlL~SDq~L~~d~--~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 254 NLKNGRGILESDQKLWTDA--STRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHHhcCCCcCCchHhhcCc--cHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 9999999999999999999 9999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.5e-99 Score=729.85 Aligned_cols=298 Identities=56% Similarity=0.946 Sum_probs=287.2
Q ss_pred CCCcccccCCChhHHHHHHHHHHHHHhhCccchhhhHHhhhccccccCCCcceeccCCCCccccccCCCCCCCchhhHHH
Q 018873 27 QLSPFFYSSTCPNVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDNTTTIVSEKFAGPNINSARGFEVV 106 (349)
Q Consensus 27 ~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~aa~lLRL~FHDcfv~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~I 106 (349)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||++++++.+|+++++|. +++||++|
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i 79 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVI 79 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC-CcchhHHH
Confidence 59999999999999999999999999999999999999999999999999999999887778999999999 57999999
Q ss_pred HHHHHHHHhhCCCCCcHHHHHHHhhhhHHhhcCCCcceeccCCCCCCCcccccccCCCCCCCCCHHHHHHHHHHcCCCCc
Q 018873 107 DDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDN 186 (349)
Q Consensus 107 ~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~ 186 (349)
+.||+++|+.||++||||||||||||+||+++|||.|+|++||+|+.++.+..+ ++||.|+.+++++++.|+++||+++
T Consensus 80 ~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~ 158 (298)
T cd00693 80 DDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVT 158 (298)
T ss_pred HHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999999999999999999999999998877655 7899999999999999999999999
Q ss_pred cchhhhccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCCccChHHHHHhhhc
Q 018873 187 FDLVALSGAHTFGRAQCRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDLFDNKYFFNLQIR 266 (349)
Q Consensus 187 ~e~VaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~ 266 (349)
|||||+||||||++||.+|.+|||+|+|++.+||+||+.|+..|+..||...+....++||+.||.+|||+||+||+.+
T Consensus 159 -d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~ 237 (298)
T cd00693 159 -DLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAG 237 (298)
T ss_pred -HheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhc
Confidence 9999999999999999999999999999989999999999999999999755455678999999999999999999999
Q ss_pred ccccccchhhccCCccchHHHHHHhhhcHHHHHHHHHHHHHHhhcCCCCCCCCCccccccccc
Q 018873 267 KGLLQSDQELFSTPGADTAAIVNVFSSNQAAFFQSFVISMIRMGNLRPLTGNQGEIRLNCRRV 329 (349)
Q Consensus 267 ~glL~SD~~L~~d~~a~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~ 329 (349)
+|+|+|||+|+.|+ +|+++|++||.||+.|+++|++||+||++|+|+||.+||||++|+.+
T Consensus 238 ~glL~SD~~L~~d~--~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 238 RGLLTSDQALLSDP--RTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred ccCccCCHHhccCc--cHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 99999999999999 99999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2.2e-71 Score=517.51 Aligned_cols=229 Identities=48% Similarity=0.828 Sum_probs=209.7
Q ss_pred HHHHHHHHHhhCccchhhhHHhhhccccc-cCCCcceeccCCCCccccccCCCCCCCchhhHHHHHHHHHHHhhCCCCCc
Q 018873 44 IREVLKNAFLSDIRIGASLIRLHFHDCFV-NGCDASILLDNTTTIVSEKFAGPNINSARGFEVVDDMKAAVERACPGVVS 122 (349)
Q Consensus 44 Vr~~v~~~~~~~~~~aa~lLRL~FHDcfv-~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~I~~iK~~le~~cp~~VS 122 (349)
||++|++++.++++++|++|||+|||||+ +|||||||+. ..|+++++|.++.+++++|+.||+++|++||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 89999999999999999999999999999 9999999983 48999999996555999999999999999999999
Q ss_pred HHHHHHHhhhhHHhhcCCCcceeccCCCCCCCcccccccCCCCCCCCCHHHHHHHHHHcCCCCccchhhhcccccccccc
Q 018873 123 CADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGAHTFGRAQ 202 (349)
Q Consensus 123 cADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~~e~VaLsGaHTiG~~h 202 (349)
|||||+||||+||+.+|||.|+|++||+|+.++...++ .+||.|+.++++|++.|+++||+++ |||||+||||||++|
T Consensus 76 ~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~-e~VaLsGaHTiG~~~ 153 (230)
T PF00141_consen 76 CADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAE-EMVALSGAHTIGRAH 153 (230)
T ss_dssp HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HH-HHHHHHGGGGSTEES
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchh-hhcceecccccccce
Confidence 99999999999999999999999999999999998776 7899999999999999999999999 999999999999999
Q ss_pred ccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCCccChHHHHHhhhcccccccchhhccCCcc
Q 018873 203 CRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDLFDNKYFFNLQIRKGLLQSDQELFSTPGA 282 (349)
Q Consensus 203 c~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~a 282 (349)
|.+|. ||| + .+||+||+.|+.. .| ..++++ .+++| ||.+|||+||++|+.++|+|+||++|+.|+
T Consensus 154 c~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~-- 218 (230)
T PF00141_consen 154 CSSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDP-- 218 (230)
T ss_dssp GGCTG-GTS-C----SSGTTSTHHHHHH---SS-STSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHST--
T ss_pred ecccc-ccc-c----cccccccccccee---cc-CCCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCH--
Confidence 99999 999 5 5799999999988 99 333333 78899 999999999999999999999999999999
Q ss_pred chHHHHHHhhhc
Q 018873 283 DTAAIVNVFSSN 294 (349)
Q Consensus 283 ~t~~~V~~yA~d 294 (349)
+|+++|++||+|
T Consensus 219 ~t~~~V~~yA~d 230 (230)
T PF00141_consen 219 ETRPIVERYAQD 230 (230)
T ss_dssp THHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=7.1e-69 Score=512.10 Aligned_cols=232 Identities=28% Similarity=0.468 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHhhCccchhhhHHhhhcccc-------ccCCCcceeccCCCCccccccCCCCCCCchhhHHHHHHHHHHH
Q 018873 42 NIIREVLKNAFLSDIRIGASLIRLHFHDCF-------VNGCDASILLDNTTTIVSEKFAGPNINSARGFEVVDDMKAAVE 114 (349)
Q Consensus 42 ~iVr~~v~~~~~~~~~~aa~lLRL~FHDcf-------v~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~I~~iK~~le 114 (349)
+.+|++| ..+.++|.++|.+|||+||||| ++||||||++. +|+++++|.++.+||++|+.||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~- 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH- 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc-
Confidence 4566777 4477799999999999999999 89999999984 6999999996557999999999987
Q ss_pred hhCCCCCcHHHHHHHhhhhHHhhcCCCcceeccCCCCCCCcccccccCCCCCCCCCHHHHHHHHHHcCCCCccchhhhcc
Q 018873 115 RACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSG 194 (349)
Q Consensus 115 ~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~~e~VaLsG 194 (349)
++|||||||+||||+||+.+|||.|+|++||+|++++++ +++||+|+.+++++++.|+++||+++ |||||+|
T Consensus 87 ----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~-D~VaLsG 158 (289)
T PLN02608 87 ----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDK-DIVALSG 158 (289)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHH-HHhhhcc
Confidence 389999999999999999999999999999999999863 46899999999999999999999999 9999999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCCccChHHHHHhhhc--ccc--c
Q 018873 195 AHTFGRAQCRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDLFDNKYFFNLQIR--KGL--L 270 (349)
Q Consensus 195 aHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl--L 270 (349)
|||||++||. |+ +|.|. + + .||.+|||+||+||+.+ +|+ |
T Consensus 159 AHTiG~ahc~----r~-g~~g~-------------------------~-----~-~Tp~~FDN~Yy~~ll~~~~~gll~L 202 (289)
T PLN02608 159 GHTLGRAHPE----RS-GFDGP-------------------------W-----T-KEPLKFDNSYFVELLKGESEGLLKL 202 (289)
T ss_pred cccccccccc----CC-CCCCC-------------------------C-----C-CCCCccChHHHHHHHcCCcCCcccc
Confidence 9999999995 54 43220 1 1 68999999999999998 787 7
Q ss_pred ccchhhccCCccchHHHHHHhhhcHHHHHHHHHHHHHHhhcCCCCCCCCCccccccc
Q 018873 271 QSDQELFSTPGADTAAIVNVFSSNQAAFFQSFVISMIRMGNLRPLTGNQGEIRLNCR 327 (349)
Q Consensus 271 ~SD~~L~~d~~a~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~ 327 (349)
+|||+|+.|+ +|+++|++||.|++.|+++|++||+||++|+|+||.+||+.+.-+
T Consensus 203 ~SD~~L~~d~--~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 203 PTDKALLEDP--EFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred ccCHhhhcCh--hHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 9999999999 999999999999999999999999999999999999999988654
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=4.3e-66 Score=487.34 Aligned_cols=231 Identities=26% Similarity=0.384 Sum_probs=209.0
Q ss_pred hHHHHHHHHHHHHHhhCccchhhhHHhhhccccccCCCcceeccC---CCCccccccCCCCCCCchhhHHHHHHHHHHHh
Q 018873 39 NVTNIIREVLKNAFLSDIRIGASLIRLHFHDCFVNGCDASILLDN---TTTIVSEKFAGPNINSARGFEVVDDMKAAVER 115 (349)
Q Consensus 39 ~~e~iVr~~v~~~~~~~~~~aa~lLRL~FHDcfv~GcDgSill~~---~~~~~~E~~~~~N~~~~~g~~~I~~iK~~le~ 115 (349)
..++|||++|++.+. +++++|++|||+||||| +||+|+++++ +..+.+|+++++|.++.+||++|+.||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~--~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSG--TYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHh--ccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 457899999999999 99999999999999999 4888887753 333457999999996669999999999986
Q ss_pred hCCCCCcHHHHHHHhhhhHHhhcCCCcceeccCCCCCCCcccccccCCCCCCCCCHHHHHHHHHHcCCCCccchhhhccc
Q 018873 116 ACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSGA 195 (349)
Q Consensus 116 ~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~~e~VaLsGa 195 (349)
| +||||||||||||+||+.+|||.|+|++||+|+.++....++.+||.|+.++++|++.|+++||+++ |||||+||
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~-d~VaLsGa 161 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQ-EIVALSGA 161 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHH-HHHHhccc
Confidence 4 8999999999999999999999999999999999998777778899999999999999999999999 99999999
Q ss_pred cccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCCccChHHHHHhhhccc-------
Q 018873 196 HTFGRAQCRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDLFDNKYFFNLQIRKG------- 268 (349)
Q Consensus 196 HTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~g------- 268 (349)
||||++||.. ++|.|. |..||.+|||+||+||+.++|
T Consensus 162 HTiG~a~c~~-----~~~~g~-------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~~ 205 (253)
T cd00691 162 HTLGRCHKER-----SGYDGP-------------------------------WTKNPLKFDNSYFKELLEEDWKLPTPGL 205 (253)
T ss_pred ceeecccccC-----CCCCCC-------------------------------CCCCCCcccHHHHHHHhcCCCccCcCcc
Confidence 9999999953 233221 115899999999999999999
Q ss_pred -ccccchhhccCCccchHHHHHHhhhcHHHHHHHHHHHHHHhhcCCCCC
Q 018873 269 -LLQSDQELFSTPGADTAAIVNVFSSNQAAFFQSFVISMIRMGNLRPLT 316 (349)
Q Consensus 269 -lL~SD~~L~~d~~a~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~t 316 (349)
+|+||++|+.|+ +|+++|+.||.|+++|+++|++||+||++|||..
T Consensus 206 ~~L~sD~~L~~d~--~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 206 LMLPTDKALLEDP--KFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred eechhhHHHHcCc--cHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999 9999999999999999999999999999999863
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.4e-64 Score=475.76 Aligned_cols=232 Identities=28% Similarity=0.488 Sum_probs=208.1
Q ss_pred ccccc--CCChhHHHHHHHHHHHHHhhCccchhhhHHhhhc-----ccccc--CCCcceeccCCCCccccccCCCCCCCc
Q 018873 30 PFFYS--STCPNVTNIIREVLKNAFLSDIRIGASLIRLHFH-----DCFVN--GCDASILLDNTTTIVSEKFAGPNINSA 100 (349)
Q Consensus 30 ~~fY~--~sCP~~e~iVr~~v~~~~~~~~~~aa~lLRL~FH-----Dcfv~--GcDgSill~~~~~~~~E~~~~~N~~~~ 100 (349)
.+||. +-|+++++.++..+++.+ .+++++|.+|||+|| ||+++ ||||||.. .+|+++++|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~ 75 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIH 75 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHH
Confidence 35665 348899999999999988 789999999999999 88887 99999944 3799999999766
Q ss_pred hhhHHHHHHHHHHHhhCCCCCcHHHHHHHhhhhHHhhcCCCcceeccCCCCCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 018873 101 RGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRFRN 180 (349)
Q Consensus 101 ~g~~~I~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~ 180 (349)
+||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.+ +++||.|+.++++|++.|++
T Consensus 76 ~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~ 147 (250)
T PLN02364 76 IALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAK 147 (250)
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHH
Confidence 9999999999997 489999999999999999999999999999999999865 46799999999999999997
Q ss_pred -cCCCCccchhhhccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCCccChHH
Q 018873 181 -VGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDLFDNKY 259 (349)
Q Consensus 181 -~Glt~~~e~VaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Y 259 (349)
+||+++ |||||+||||||++|| .|+ +|.|. ++ .||.+|||+|
T Consensus 148 ~~Gl~~~-d~VaLsGaHTiG~~hc----~r~-~~~g~------------------------------~~-~tp~~fDn~Y 190 (250)
T PLN02364 148 QMGLSDK-DIVALSGAHTLGRCHK----DRS-GFEGA------------------------------WT-SNPLIFDNSY 190 (250)
T ss_pred hcCCCHH-HheeeecceeeccccC----CCC-CCCCC------------------------------CC-CCCCccchHH
Confidence 599999 9999999999999999 344 33221 12 6899999999
Q ss_pred HHHhhhc--ccccc--cchhhccCCccchHHHHHHhhhcHHHHHHHHHHHHHHhhcCCCC
Q 018873 260 FFNLQIR--KGLLQ--SDQELFSTPGADTAAIVNVFSSNQAAFFQSFVISMIRMGNLRPL 315 (349)
Q Consensus 260 y~~l~~~--~glL~--SD~~L~~d~~a~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 315 (349)
|++|+.+ +|+|. |||+|+.|+ +|+.+|+.||.|+++|+++|++||+||++||+-
T Consensus 191 y~~ll~~~~~gll~l~sD~~L~~d~--~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 191 FKELLSGEKEGLLQLVSDKALLDDP--VFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHhcCCcCCCccccchHHHccCc--hHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999998 89865 999999999 999999999999999999999999999999973
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7.9e-63 Score=478.16 Aligned_cols=238 Identities=27% Similarity=0.400 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHhhCcc---chhhhHHhhhccccc------------cCCCcceeccCCCCccccccCCCCCCCchhhH
Q 018873 40 VTNIIREVLKNAFLSDIR---IGASLIRLHFHDCFV------------NGCDASILLDNTTTIVSEKFAGPNINSARGFE 104 (349)
Q Consensus 40 ~e~iVr~~v~~~~~~~~~---~aa~lLRL~FHDcfv------------~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~ 104 (349)
+|..|+++|++.+.++.. .|+.+|||+||||++ +|||||||++.+ .|+++++|.+ ++ +
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~g-L~--~ 88 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIG-LD--E 88 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCC-HH--H
Confidence 588999999999986544 577799999999996 799999999853 6999999984 45 8
Q ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHhhhhHHhh-cCCCcceeccCCCCCCCcccccccCCCCCCCCCHHHHHHHHHHcCC
Q 018873 105 VVDDMKAAVERACPGVVSCADILTIAAEESVAL-SGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGL 183 (349)
Q Consensus 105 ~I~~iK~~le~~cp~~VScADilalAardaV~~-~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl 183 (349)
+|+.+|..+|+.| |||||||+||||+||+. .|||.|+|++||+|++.+.+ +++||.|+.++++|++.|+++||
T Consensus 89 vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf 162 (328)
T cd00692 89 IVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADAGF 162 (328)
T ss_pred HHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCC
Confidence 9999999999998 99999999999999995 59999999999999999864 45799999999999999999999
Q ss_pred CCccchhhhccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCCccChHHHHHh
Q 018873 184 NDNFDLVALSGAHTFGRAQCRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDLFDNKYFFNL 263 (349)
Q Consensus 184 t~~~e~VaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l 263 (349)
+++ |||+|+||||||++|. +||+++ ..++| .||.+|||+||+|+
T Consensus 163 ~~~-E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p~D-~TP~~FDn~Yf~~l 206 (328)
T cd00692 163 SPD-ELVALLAAHSVAAQDF---------------VDPSIA-------------------GTPFD-STPGVFDTQFFIET 206 (328)
T ss_pred CHH-HHhhhcccccccccCC---------------CCCCCC-------------------CCCCC-CCcchhcHHHHHHH
Confidence 999 9999999999999982 367664 14578 69999999999998
Q ss_pred h-hccc-------------------ccccchhhccCCccchHHHHHHhhhcHHHHHHHHHHHHHHhhcCCCCCCCCCccc
Q 018873 264 Q-IRKG-------------------LLQSDQELFSTPGADTAAIVNVFSSNQAAFFQSFVISMIRMGNLRPLTGNQGEIR 323 (349)
Q Consensus 264 ~-~~~g-------------------lL~SD~~L~~d~~a~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR 323 (349)
+ .+++ +|+||++|+.|+ +|+.+|++||+||++|+++|++||+||++|||. ...+
T Consensus 207 l~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~--~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l 280 (328)
T cd00692 207 LLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDP--RTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISL 280 (328)
T ss_pred HHcCCCCCCccccccccccCccccccccchHHHhcCC--cHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchh
Confidence 7 4555 499999999999 999999999999999999999999999999987 3478
Q ss_pred cccccccCC
Q 018873 324 LNCRRVNGN 332 (349)
Q Consensus 324 ~~C~~~n~~ 332 (349)
.+|+.|++.
T Consensus 281 ~dcs~v~p~ 289 (328)
T cd00692 281 TDCSDVIPP 289 (328)
T ss_pred ccCcccCCC
Confidence 899999964
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.5e-62 Score=461.49 Aligned_cols=222 Identities=27% Similarity=0.441 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHhhCccchhhhHHhhhccccc-------cCCCcceeccCCCCccccccCCCCCCCchhhHHHHHHHHH
Q 018873 40 VTNIIREVLKNAFLSDIRIGASLIRLHFHDCFV-------NGCDASILLDNTTTIVSEKFAGPNINSARGFEVVDDMKAA 112 (349)
Q Consensus 40 ~e~iVr~~v~~~~~~~~~~aa~lLRL~FHDcfv-------~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~I~~iK~~ 112 (349)
..+-++..+.+.+. +..++|.+|||+||||.+ +||||||++. .|+++++|.++..++++|++||++
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~ 88 (251)
T PLN02879 16 AVQRCKRKLRGLIA-EKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKEL 88 (251)
T ss_pred HHHHHHHHHHHHHh-CCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHH
Confidence 34556888888774 579999999999999964 8999999763 699999999776699999999999
Q ss_pred HHhhCCCCCcHHHHHHHhhhhHHhhcCCCcceeccCCCCCCCcccccccCCCCCCCCCHHHHHHHHHHcCCCCccchhhh
Q 018873 113 VERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVAL 192 (349)
Q Consensus 113 le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~~e~VaL 192 (349)
+ ++|||||||+||||+||+.+|||.|+|++||+|+..+.+ +++||.|+.++++|++.|+++||+++ |||||
T Consensus 89 ~-----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~-dlVAL 159 (251)
T PLN02879 89 F-----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDK-DIVAL 159 (251)
T ss_pred c-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHH-HHeee
Confidence 7 489999999999999999999999999999999998854 46899999999999999999999999 99999
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCCccChHHHHHhhhc--ccc-
Q 018873 193 SGAHTFGRAQCRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDLFDNKYFFNLQIR--KGL- 269 (349)
Q Consensus 193 sGaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl- 269 (349)
+||||||++||. | ++|.|. +| .||.+|||+||++|+.+ +|+
T Consensus 160 sGaHTiG~ah~~----r-~g~~g~------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gll 203 (251)
T PLN02879 160 SGGHTLGRCHKE----R-SGFEGA------------------------------WT-PNPLIFDNSYFKEILSGEKEGLL 203 (251)
T ss_pred eccccccccccc----c-ccCCCC------------------------------CC-CCccceeHHHHHHHHcCCcCCCc
Confidence 999999999995 3 343221 23 68999999999999998 887
Q ss_pred -cccchhhccCCccchHHHHHHhhhcHHHHHHHHHHHHHHhhcCCCC
Q 018873 270 -LQSDQELFSTPGADTAAIVNVFSSNQAAFFQSFVISMIRMGNLRPL 315 (349)
Q Consensus 270 -L~SD~~L~~d~~a~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 315 (349)
|+||++|+.|+ +|+++|++||.||++|+++|++||+||++||+.
T Consensus 204 ~L~SD~aL~~D~--~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 204 QLPTDKALLDDP--LFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred cchhhHHHhcCC--cHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 67999999999 999999999999999999999999999999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=8.6e-59 Score=438.18 Aligned_cols=224 Identities=33% Similarity=0.494 Sum_probs=206.1
Q ss_pred HHHHHHHHHHhhCccchhhhHHhhhcccccc--------CCCcceeccCCCCccccccCCCCCCCchhhHHHHHHHHHHH
Q 018873 43 IIREVLKNAFLSDIRIGASLIRLHFHDCFVN--------GCDASILLDNTTTIVSEKFAGPNINSARGFEVVDDMKAAVE 114 (349)
Q Consensus 43 iVr~~v~~~~~~~~~~aa~lLRL~FHDcfv~--------GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~I~~iK~~le 114 (349)
.|++.|++.+.+++.+++++|||+|||||+. ||||||+++ +|+++++|.++.+++++|+.||.++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccHHHHHHHHHHHHHHcC
Confidence 5889999999999999999999999999996 999999997 39999999977799999999999999
Q ss_pred hhCCCCCcHHHHHHHhhhhHHhhc--CCCcceeccCCCCCCCcc--cccccCCCCCCCCCHHHHHHHHHHcCCCCccchh
Q 018873 115 RACPGVVSCADILTIAAEESVALS--GGPSWTNLLGRRDSRTAN--RTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLV 190 (349)
Q Consensus 115 ~~cp~~VScADilalAardaV~~~--GGP~~~v~~GRrD~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~~e~V 190 (349)
. |++|||||||+||+++||+.+ |||.|+|++||+|+..+. ...+..++|.|..+++++++.|+++||+++ |||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~-e~V 152 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPS-ELV 152 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHH-HHH
Confidence 8 899999999999999999999 999999999999999764 223346788888899999999999999999 999
Q ss_pred hhc-ccccc-ccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCCccChHHHHHhhhcc-
Q 018873 191 ALS-GAHTF-GRAQCRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDLFDNKYFFNLQIRK- 267 (349)
Q Consensus 191 aLs-GaHTi-G~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~- 267 (349)
||+ ||||| |++||..|..|+ | .+|+.||.+|||+||++++.++
T Consensus 153 AL~~GaHti~G~~~~~~~~~~~------------------------~----------~~~~~tp~~fDN~yy~~l~~~~~ 198 (255)
T cd00314 153 ALSAGAHTLGGKNHGDLLNYEG------------------------S----------GLWTSTPFTFDNAYFKNLLDMNW 198 (255)
T ss_pred hhccCCeeccCcccCCCCCccc------------------------C----------CCCCCCCCccchHHHHHHhcCCc
Confidence 999 99999 999998776554 2 1355899999999999999988
Q ss_pred ---------------cccccchhhccCCccchHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 018873 268 ---------------GLLQSDQELFSTPGADTAAIVNVFSSNQAAFFQSFVISMIRMGN 311 (349)
Q Consensus 268 ---------------glL~SD~~L~~d~~a~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 311 (349)
++|+||++|+.|+ +|+.+|++||.|+++|+++|++||+||++
T Consensus 199 ~~~~~~~~~~~~~~~~~l~sD~~L~~d~--~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 199 EWRVGSPDPDGVKGPGLLPSDYALLSDS--ETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred ccccCCccCCCcccCCCchhhHHHhcCH--hHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 8999999999999 99999999999999999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=8.4e-56 Score=435.78 Aligned_cols=273 Identities=21% Similarity=0.331 Sum_probs=234.6
Q ss_pred CCccc-ccCCChhHH-HHHHHHHHHHHhhC--------ccchhhhHHhhhccccc-------cCCC-cceeccCCCCccc
Q 018873 28 LSPFF-YSSTCPNVT-NIIREVLKNAFLSD--------IRIGASLIRLHFHDCFV-------NGCD-ASILLDNTTTIVS 89 (349)
Q Consensus 28 L~~~f-Y~~sCP~~e-~iVr~~v~~~~~~~--------~~~aa~lLRL~FHDcfv-------~GcD-gSill~~~~~~~~ 89 (349)
+-.+| |.+.+-+.. +.|+++|++.+... ...+|.+|||+|||+.+ +|++ |+|.+. +
T Consensus 29 ~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------p 102 (409)
T cd00649 29 MGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------P 102 (409)
T ss_pred CCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------c
Confidence 43444 444443433 78999999999865 37999999999999975 7886 788665 7
Q ss_pred cccCCCCCCCchhhHHHHHHHHHHHhhCCCCCcHHHHHHHhhhhHHhhcCCCcceeccCCCCCCCcccc-----------
Q 018873 90 EKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRT----------- 158 (349)
Q Consensus 90 E~~~~~N~~~~~g~~~I~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~----------- 158 (349)
|++++.|.++.+++.+++.||+++ |..||+||+|+||+..||+.+|||.|++.+||.|...+...
T Consensus 103 e~~~~~N~gL~~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~ 178 (409)
T cd00649 103 LNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLA 178 (409)
T ss_pred ccCcHhhhhHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhccc
Confidence 999999998889999999999987 44799999999999999999999999999999999754320
Q ss_pred --------------------------cccCCCCCCCCCHHHHHHHHHHcCCCCccchhhh-ccccccccccccccccccc
Q 018873 159 --------------------------LANENLPGPNNTLTRLKDRFRNVGLNDNFDLVAL-SGAHTFGRAQCRTFSDRLF 211 (349)
Q Consensus 159 --------------------------~~~~~lP~p~~~~~~l~~~F~~~Glt~~~e~VaL-sGaHTiG~~hc~~f~~Rl~ 211 (349)
+.+..||+|..++.+|++.|.+|||+++ ||||| +||||||++||..|.+||.
T Consensus 179 ~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~-E~VAL~sGAHTiGkaHc~~~~~rlg 257 (409)
T cd00649 179 DKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGPASHVG 257 (409)
T ss_pred ccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHH-HHeeeccCCcceeecCcccccccCC
Confidence 1122699999999999999999999999 99999 5999999999999999982
Q ss_pred cCCCCCCCCCCCCHHHHHHHH--HhCCCCCC-CCcccccC---CCCCCccChHHHHHhhh--------------------
Q 018873 212 NFNNTGNPDPTLNTTLLQQLR--QLCPQGGN-GSVLTNLD---VTTPDLFDNKYFFNLQI-------------------- 265 (349)
Q Consensus 212 ~f~g~~~~dp~~d~~~~~~L~--~~Cp~~~~-~~~~~~lD---~~Tp~~FDN~Yy~~l~~-------------------- 265 (349)
+||.+++.|++.|. ..||.+.+ +...+.+| ..||.+|||+||++|+.
T Consensus 258 -------~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~ 330 (409)
T cd00649 258 -------PEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNA 330 (409)
T ss_pred -------CCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCc
Confidence 59999999999995 99997533 33355688 47999999999999998
Q ss_pred ----------------cccccccchhhccCCccchHHHHHHhhhcHHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 018873 266 ----------------RKGLLQSDQELFSTPGADTAAIVNVFSSNQAAFFQSFVISMIRM--GNLRPLTGNQG 320 (349)
Q Consensus 266 ----------------~~glL~SD~~L~~d~~a~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~lgv~tg~~G 320 (349)
++|||+||++|+.|+ +|+++|++||.|+++||++|++||+|| +.|||++--.|
T Consensus 331 ~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp--~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 331 AGENTVPDAHDPSKKHAPMMLTTDLALRFDP--EYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cccccCCCccccccccCcccchhhHhhhcCc--cHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 569999999999999 999999999999999999999999999 57999886554
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.8e-53 Score=441.45 Aligned_cols=270 Identities=21% Similarity=0.314 Sum_probs=229.9
Q ss_pred CCccc-ccCCChhH-HHHHHHHHHHHHhhC--------ccchhhhHHhhhccccc-------cCC-CcceeccCCCCccc
Q 018873 28 LSPFF-YSSTCPNV-TNIIREVLKNAFLSD--------IRIGASLIRLHFHDCFV-------NGC-DASILLDNTTTIVS 89 (349)
Q Consensus 28 L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~~--------~~~aa~lLRL~FHDcfv-------~Gc-DgSill~~~~~~~~ 89 (349)
+-.+| |.+.+-+. .+.||++|++.+... ...+|.+|||+||++.+ +|| .|+|.+. +
T Consensus 39 ~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P 112 (716)
T TIGR00198 39 MGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------P 112 (716)
T ss_pred CCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------c
Confidence 33444 44444333 257999999999875 36999999999999975 687 5787665 7
Q ss_pred cccCCCCCCCchhhHHHHHHHHHHHhhCCCCCcHHHHHHHhhhhHHhhcCCCcceeccCCCCCCCccc------------
Q 018873 90 EKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANR------------ 157 (349)
Q Consensus 90 E~~~~~N~~~~~g~~~I~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~------------ 157 (349)
|++++.|.++.+++.+++.||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+..
T Consensus 113 ~~sw~~N~~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~ 188 (716)
T TIGR00198 113 LNSWPDNVNLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLT 188 (716)
T ss_pred ccCchhhhhHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhh
Confidence 99999999888899999999886 89999999999999999999999999999999999943320
Q ss_pred --------------c----------cccCCCCCCCCCHHHHHHHHHHcCCCCccchhhhc-ccccccccccccccccccc
Q 018873 158 --------------T----------LANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALS-GAHTFGRAQCRTFSDRLFN 212 (349)
Q Consensus 158 --------------~----------~~~~~lP~p~~~~~~l~~~F~~~Glt~~~e~VaLs-GaHTiG~~hc~~f~~Rl~~ 212 (349)
. +....+|.|..++++|++.|++|||+++ |||||+ ||||||++||.+|.+||
T Consensus 189 ~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~-EmVALiaGaHTiGkaHc~s~~~rl-- 265 (716)
T TIGR00198 189 SSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDE-ETVALIAGGHTVGKCHGAGPAELI-- 265 (716)
T ss_pred ccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChH-HHeeeecCceeccccCCCcccccC--
Confidence 0 1122699999999999999999999999 999996 99999999999999998
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhCCCCCC---CCcccccC---CCCCCccChHHHHHhhhc--------------------
Q 018873 213 FNNTGNPDPTLNTTLLQQLRQLCPQGGN---GSVLTNLD---VTTPDLFDNKYFFNLQIR-------------------- 266 (349)
Q Consensus 213 f~g~~~~dp~~d~~~~~~L~~~Cp~~~~---~~~~~~lD---~~Tp~~FDN~Yy~~l~~~-------------------- 266 (349)
++||++++.|++.|+..||.+.+ +...+.+| ..||.+|||+||+||+.+
T Consensus 266 -----g~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~ 340 (716)
T TIGR00198 266 -----GPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAP 340 (716)
T ss_pred -----CCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccc
Confidence 27999999999999999985322 22345677 579999999999999975
Q ss_pred --------------ccccccchhhccCCccchHHHHHHhhhcHHHHHHHHHHHHHHhhc--CCCCCC
Q 018873 267 --------------KGLLQSDQELFSTPGADTAAIVNVFSSNQAAFFQSFVISMIRMGN--LRPLTG 317 (349)
Q Consensus 267 --------------~glL~SD~~L~~d~~a~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--lgv~tg 317 (349)
+++|+||++|..|+ +|+++|++||.|++.|+++|++||+||++ +|++.-
T Consensus 341 ~~~p~~~~~~~~~~~~mL~SDlaL~~Dp--~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~ 405 (716)
T TIGR00198 341 EIIPDVEDPNKKHNPIMLDADLALRFDP--EFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSR 405 (716)
T ss_pred cccccccccccccccCccchhHHhccCc--cHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhh
Confidence 68999999999999 99999999999999999999999999994 776543
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=9.5e-50 Score=413.03 Aligned_cols=273 Identities=22% Similarity=0.330 Sum_probs=230.8
Q ss_pred CCccc-ccCCChhH-HHHHHHHHHHHHhhC--------ccchhhhHHhhhccccc-------cCCC-cceeccCCCCccc
Q 018873 28 LSPFF-YSSTCPNV-TNIIREVLKNAFLSD--------IRIGASLIRLHFHDCFV-------NGCD-ASILLDNTTTIVS 89 (349)
Q Consensus 28 L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~~--------~~~aa~lLRL~FHDcfv-------~GcD-gSill~~~~~~~~ 89 (349)
+-.+| |.+-+-.. .+.||++|.+.+... ...+|.+|||+||++.+ +||+ |+|.+. +
T Consensus 41 ~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------p 114 (726)
T PRK15061 41 MGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------P 114 (726)
T ss_pred CCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------c
Confidence 33444 44444333 357999999999865 37999999999999985 6885 777664 7
Q ss_pred cccCCCCCCCchhhHHHHHHHHHHHhhCCCCCcHHHHHHHhhhhHHhhcCCCcceeccCCCCCCCcccc-----------
Q 018873 90 EKFAGPNINSARGFEVVDDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRT----------- 158 (349)
Q Consensus 90 E~~~~~N~~~~~g~~~I~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~----------- 158 (349)
|++++.|.++.+++.++++||+++ |..||+||+|+||+..|||.+|||.|++.+||.|...+...
T Consensus 115 e~~w~~N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~ 190 (726)
T PRK15061 115 LNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLG 190 (726)
T ss_pred cccchhhhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccc
Confidence 999999998889999999999987 45799999999999999999999999999999998654321
Q ss_pred ---------------------------cccCCCCCCCCCHHHHHHHHHHcCCCCccchhhhc-ccccccccccccccccc
Q 018873 159 ---------------------------LANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALS-GAHTFGRAQCRTFSDRL 210 (349)
Q Consensus 159 ---------------------------~~~~~lP~p~~~~~~l~~~F~~~Glt~~~e~VaLs-GaHTiG~~hc~~f~~Rl 210 (349)
+-+..+|+|..++.+|++.|++|||+++ |||||+ ||||||++||..|.+||
T Consensus 191 ~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDe-EtVALiaGgHT~GkaHca~~~~rl 269 (726)
T PRK15061 191 GDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGDASHV 269 (726)
T ss_pred cccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHH-HheeeccCCceeeeCCCcCccccc
Confidence 0012389999999999999999999999 999995 99999999999999998
Q ss_pred ccCCCCCCCCCCCCHHHHHHHH--HhCCCCCC-CCcccccC---CCCCCccChHHHHHhhhc------------------
Q 018873 211 FNFNNTGNPDPTLNTTLLQQLR--QLCPQGGN-GSVLTNLD---VTTPDLFDNKYFFNLQIR------------------ 266 (349)
Q Consensus 211 ~~f~g~~~~dp~~d~~~~~~L~--~~Cp~~~~-~~~~~~lD---~~Tp~~FDN~Yy~~l~~~------------------ 266 (349)
.+||.+++.+++.|. +.||.+.+ +.....+| ..||.+|||+||++|+.+
T Consensus 270 -------gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~ 342 (726)
T PRK15061 270 -------GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKD 342 (726)
T ss_pred -------CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccC
Confidence 269999999999984 99997533 33355677 579999999999999985
Q ss_pred ------------------ccccccchhhccCCccchHHHHHHhhhcHHHHHHHHHHHHHHhhc--CCCCCCCCC
Q 018873 267 ------------------KGLLQSDQELFSTPGADTAAIVNVFSSNQAAFFQSFVISMIRMGN--LRPLTGNQG 320 (349)
Q Consensus 267 ------------------~glL~SD~~L~~d~~a~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--lgv~tg~~G 320 (349)
.+||+||++|..|| +++++|++||.|+++|+++|++||.||++ +|+++---|
T Consensus 343 ~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP--~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 343 GAAEDTVPDAHDPSKKHAPTMLTTDLALRFDP--EYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred ccccccCCcccccccccCcccccccHHhhcCC--cHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 58999999999999 99999999999999999999999999965 777654333
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=6.3e-49 Score=369.21 Aligned_cols=218 Identities=25% Similarity=0.323 Sum_probs=177.1
Q ss_pred HHHHHHHHhhCccchhhhHHhhhcccc-------ccCCCcceeccCCCCcccccc-CCCCCCCchhhHHHHHHHHHHHhh
Q 018873 45 REVLKNAFLSDIRIGASLIRLHFHDCF-------VNGCDASILLDNTTTIVSEKF-AGPNINSARGFEVVDDMKAAVERA 116 (349)
Q Consensus 45 r~~v~~~~~~~~~~aa~lLRL~FHDcf-------v~GcDgSill~~~~~~~~E~~-~~~N~~~~~g~~~I~~iK~~le~~ 116 (349)
...-......++++++.+|||+||||| ++||||||+++.. .+|+. .+.|. .+++|+.|+.+
T Consensus 28 ~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~-~l~~~~~i~~~------- 96 (264)
T cd08201 28 TPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNT-TLNFFVNFYSP------- 96 (264)
T ss_pred ccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhh-ccccceeeccC-------
Confidence 333344555789999999999999999 8999999999742 46777 44454 56788877543
Q ss_pred CCCCCcHHHHHHHhhhhHHhhcCCCcceeccCCCCCCCcccccccCCCCCCCCCHHHHHHHHHHcCCCCccchhhhcc-c
Q 018873 117 CPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALSG-A 195 (349)
Q Consensus 117 cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~~e~VaLsG-a 195 (349)
+||||||||||+|+||+.+|||.|+|++||+|++.+.+. .||.|+.++++|++.|+++||+++ |||+||| |
T Consensus 97 ---~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~-DmVaLsgga 168 (264)
T cd08201 97 ---RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTS-EMIALVACG 168 (264)
T ss_pred ---ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChH-HHheeecCC
Confidence 699999999999999999999999999999999988753 499999999999999999999999 9999995 9
Q ss_pred cccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCCccChHHHHHhhhccc-------
Q 018873 196 HTFGRAQCRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDLFDNKYFFNLQIRKG------- 268 (349)
Q Consensus 196 HTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~g------- 268 (349)
||||++||..|.+++- |.. ..+...++| .||.+|||+||++++.+..
T Consensus 169 HTiG~ahc~~f~~~~~---------~g~----------------~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~ 222 (264)
T cd08201 169 HTLGGVHSEDFPEIVP---------PGS----------------VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVG 222 (264)
T ss_pred eeeeecccccchhhcC---------Ccc----------------ccCCCCCCC-CCccccchHHHHHHhcCCCCCceeec
Confidence 9999999998766531 100 001134567 7999999999999998742
Q ss_pred ---ccccchhhccCCccchHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 018873 269 ---LLQSDQELFSTPGADTAAIVNVFSSNQAAFFQSFVISMIRMGN 311 (349)
Q Consensus 269 ---lL~SD~~L~~d~~a~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 311 (349)
-+.||..++...+ ...++..| |++.|.+..+..|.||.+
T Consensus 223 ~~~~~~sd~r~f~~d~---n~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 223 PNNTTNSDLRIFSSDG---NVTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCCCccchhhheecCc---cHHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 3689999997552 33456677 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.6e-38 Score=302.33 Aligned_cols=221 Identities=20% Similarity=0.258 Sum_probs=180.8
Q ss_pred HHHHHHHhhCccchhhhHHhhhccccc-------cCCCcc-eeccCCCCccccccCCCCCC--CchhhHHHHHHHHHHHh
Q 018873 46 EVLKNAFLSDIRIGASLIRLHFHDCFV-------NGCDAS-ILLDNTTTIVSEKFAGPNIN--SARGFEVVDDMKAAVER 115 (349)
Q Consensus 46 ~~v~~~~~~~~~~aa~lLRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~~--~~~g~~~I~~iK~~le~ 115 (349)
+.|++.+......++.||||+||++.+ +|++|+ |.|. +|++++.|.+ +.+.+.++++||+++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 677788888888999999999999975 799999 6554 7999999998 77899999999999852
Q ss_pred h-CCC-CCcHHHHHHHhhhhHHhhcCC-----CcceeccCCCCCCCcccccc--cCCCCCCC------------CCHHHH
Q 018873 116 A-CPG-VVSCADILTIAAEESVALSGG-----PSWTNLLGRRDSRTANRTLA--NENLPGPN------------NTLTRL 174 (349)
Q Consensus 116 ~-cp~-~VScADilalAardaV~~~GG-----P~~~v~~GRrD~~~s~~~~~--~~~lP~p~------------~~~~~l 174 (349)
. -++ .||+||+|+||+..|||.+|| |.|++.+||.|...+..... ...+|.+. ...+.|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 2 122 699999999999999999999 99999999999987643211 12345432 235789
Q ss_pred HHHHHHcCCCCccchhhhcccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCC
Q 018873 175 KDRFRNVGLNDNFDLVALSGAH-TFGRAQCRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPD 253 (349)
Q Consensus 175 ~~~F~~~Glt~~~e~VaLsGaH-TiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~ 253 (349)
++.|.++||+++ |||||+||| ++|..|..+ +.| .|+ .+|.
T Consensus 171 rd~f~rlglsd~-EmvaL~Gg~r~lG~~~~~s-------~~G-------------------------~wT------~~p~ 211 (297)
T cd08200 171 VDKAQLLTLTAP-EMTVLVGGLRVLGANYGGS-------KHG-------------------------VFT------DRPG 211 (297)
T ss_pred HHHHHhCCCChH-HHhheecchhhcccCCCCC-------CCC-------------------------CCc------CCCC
Confidence 999999999999 999999997 799887432 112 122 6799
Q ss_pred ccChHHHHHhhhcc--------------------c-----ccccchhhccCCccchHHHHHHhhhc--HHHHHHHHHHHH
Q 018873 254 LFDNKYFFNLQIRK--------------------G-----LLQSDQELFSTPGADTAAIVNVFSSN--QAAFFQSFVISM 306 (349)
Q Consensus 254 ~FDN~Yy~~l~~~~--------------------g-----lL~SD~~L~~d~~a~t~~~V~~yA~d--~~~F~~~Fa~Am 306 (349)
+|||.||+||+... | ++.+|.+|..|+ +.|++|+.||.| +++||+||++||
T Consensus 212 ~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~--~~R~~ve~YA~dd~~~~F~~DF~~A~ 289 (297)
T cd08200 212 VLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNS--ELRAVAEVYASDDAQEKFVKDFVAAW 289 (297)
T ss_pred ccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCH--HHHHHHHHHhcccchhHHHHHHHHHH
Confidence 99999999998520 1 267899999999 999999999998 999999999999
Q ss_pred HHhhcCC
Q 018873 307 IRMGNLR 313 (349)
Q Consensus 307 ~Km~~lg 313 (349)
.||+++.
T Consensus 290 ~Klmeld 296 (297)
T cd08200 290 TKVMNLD 296 (297)
T ss_pred HHHHhcC
Confidence 9999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.3e-33 Score=292.77 Aligned_cols=220 Identities=20% Similarity=0.263 Sum_probs=176.3
Q ss_pred HHHHHHHH---HHhhCccchhhhHHhhhccccc-------cCCCcc-eeccCCCCccccccCCCC--CCCchhhHHHHHH
Q 018873 43 IIREVLKN---AFLSDIRIGASLIRLHFHDCFV-------NGCDAS-ILLDNTTTIVSEKFAGPN--INSARGFEVVDDM 109 (349)
Q Consensus 43 iVr~~v~~---~~~~~~~~aa~lLRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N--~~~~~g~~~I~~i 109 (349)
+|+++|.+ .+....-..+.|||++||++.+ +|++|+ |.|. +|++++.| .++.+.+.+++.|
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~I 502 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEKI 502 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHHH
Confidence 34555554 3556677889999999999975 799998 7665 79999999 7777889999999
Q ss_pred HHHHHhhCCCCCcHHHHHHHhhhhHHhhc---CCC--cceeccCCCCCCCcccccccCCC---CCC------------CC
Q 018873 110 KAAVERACPGVVSCADILTIAAEESVALS---GGP--SWTNLLGRRDSRTANRTLANENL---PGP------------NN 169 (349)
Q Consensus 110 K~~le~~cp~~VScADilalAardaV~~~---GGP--~~~v~~GRrD~~~s~~~~~~~~l---P~p------------~~ 169 (349)
|+++.. +.||.||+|+||+..|||.+ ||| .+++.+||.|....... ++... |.+ ..
T Consensus 503 k~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td-~~~~~~l~p~adgfRn~~~~~~~~~ 578 (716)
T TIGR00198 503 QAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTD-AESFTPLEPIADGFRNYLKRDYAVT 578 (716)
T ss_pred HHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCC-ccccccCCCCCcccchhccccccCC
Confidence 998742 26999999999999999999 898 57889999999876432 22222 211 23
Q ss_pred CHHHHHHHHHHcCCCCccchhhhccc-cccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccC
Q 018873 170 TLTRLKDRFRNVGLNDNFDLVALSGA-HTFGRAQCRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLD 248 (349)
Q Consensus 170 ~~~~l~~~F~~~Glt~~~e~VaLsGa-HTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD 248 (349)
..+.|++.|.++|||++ |||||+|| |++|++|..+ +.| .++
T Consensus 579 ~~~~l~d~a~~lglt~~-EmvaL~Gg~r~lG~~~~~s-------~~G-------------------------~~T----- 620 (716)
T TIGR00198 579 PEELLLDKAQLLTLTAP-EMTVLIGGMRVLGANHGGS-------KHG-------------------------VFT----- 620 (716)
T ss_pred HHHHHHHHHHhCCCChH-HHHheecchhhccccCCCC-------CCC-------------------------CCc-----
Confidence 46778899999999999 99999998 5999998532 112 121
Q ss_pred CCCCCccChHHHHHhhhcc--------------------c---cc--ccchhhccCCccchHHHHHHhhhcH--HHHHHH
Q 018873 249 VTTPDLFDNKYFFNLQIRK--------------------G---LL--QSDQELFSTPGADTAAIVNVFSSNQ--AAFFQS 301 (349)
Q Consensus 249 ~~Tp~~FDN~Yy~~l~~~~--------------------g---lL--~SD~~L~~d~~a~t~~~V~~yA~d~--~~F~~~ 301 (349)
.+|.+|||.||+||+... | ++ .+|..|..|+ +.|++|+.||.|+ ++|++|
T Consensus 621 -~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~--~lra~aE~YA~dd~~~~F~~D 697 (716)
T TIGR00198 621 -DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNS--ILRAVAEVYAQDDAREKFVKD 697 (716)
T ss_pred -CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCH--HHHHHHHHHhcccccchHHHH
Confidence 579999999999998621 1 22 6799999999 9999999999997 899999
Q ss_pred HHHHHHHhhcCC
Q 018873 302 FVISMIRMGNLR 313 (349)
Q Consensus 302 Fa~Am~Km~~lg 313 (349)
|++||.|+++++
T Consensus 698 F~~Aw~Klm~ld 709 (716)
T TIGR00198 698 FVAAWTKVMNLD 709 (716)
T ss_pred HHHHHHHHHhCC
Confidence 999999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=9.5e-33 Score=286.74 Aligned_cols=221 Identities=20% Similarity=0.267 Sum_probs=181.1
Q ss_pred HHHHHHHhhCccchhhhHHhhhccccc-------cCCCcc-eeccCCCCccccccCCCCC--CCchhhHHHHHHHHHHHh
Q 018873 46 EVLKNAFLSDIRIGASLIRLHFHDCFV-------NGCDAS-ILLDNTTTIVSEKFAGPNI--NSARGFEVVDDMKAAVER 115 (349)
Q Consensus 46 ~~v~~~~~~~~~~aa~lLRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~--~~~~g~~~I~~iK~~le~ 115 (349)
..+++.+....-..+.|||++||++.+ +|++|+ |.|. +|++++.|. ++.+.+.+++.||++++.
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 577777887888899999999999975 799998 7775 799999998 777889999999999864
Q ss_pred hCC--CCCcHHHHHHHhhhhHHhhc---CC--CcceeccCCCCCCCcccccc--cCCCCCCC------------CCHHHH
Q 018873 116 ACP--GVVSCADILTIAAEESVALS---GG--PSWTNLLGRRDSRTANRTLA--NENLPGPN------------NTLTRL 174 (349)
Q Consensus 116 ~cp--~~VScADilalAardaV~~~---GG--P~~~v~~GRrD~~~s~~~~~--~~~lP~p~------------~~~~~l 174 (349)
.-. ..||.||+|+||+..|||.+ || |.|++.+||.|......... ...+|.+. ...+.|
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHH
Confidence 321 26999999999999999999 68 99999999999987543211 12456543 234889
Q ss_pred HHHHHHcCCCCccchhhhcccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCC
Q 018873 175 KDRFRNVGLNDNFDLVALSGAH-TFGRAQCRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPD 253 (349)
Q Consensus 175 ~~~F~~~Glt~~~e~VaLsGaH-TiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~ 253 (349)
++.|.++|||++ |||||+||| ++|..|-.+ +.| .+ ..+|.
T Consensus 596 ~d~a~~lglt~~-EmvaL~Gg~r~Lg~~~~~S-------~~G-------------------------~~------T~~p~ 636 (726)
T PRK15061 596 VDKAQLLTLTAP-EMTVLVGGLRVLGANYGGS-------KHG-------------------------VF------TDRPG 636 (726)
T ss_pred HHHHHhCCCChH-HHhheecchhhcccCCCCC-------CCC-------------------------CC------cCCCC
Confidence 999999999999 999999997 788887432 111 12 15799
Q ss_pred ccChHHHHHhhhcc--------------------c---c--cccchhhccCCccchHHHHHHhhhc--HHHHHHHHHHHH
Q 018873 254 LFDNKYFFNLQIRK--------------------G---L--LQSDQELFSTPGADTAAIVNVFSSN--QAAFFQSFVISM 306 (349)
Q Consensus 254 ~FDN~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~a~t~~~V~~yA~d--~~~F~~~Fa~Am 306 (349)
+|||.||+||+... | + +.+|..|..|+ +.|++|+.||.| +++|++||++||
T Consensus 637 ~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds--~lRa~aEvYA~dd~~~kF~~DF~~Aw 714 (726)
T PRK15061 637 VLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNS--QLRALAEVYASDDAKEKFVRDFVAAW 714 (726)
T ss_pred ccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCH--HHHHHHHHHhcccchhHHHHHHHHHH
Confidence 99999999998521 1 2 47899999999 999999999999 999999999999
Q ss_pred HHhhcCC
Q 018873 307 IRMGNLR 313 (349)
Q Consensus 307 ~Km~~lg 313 (349)
.|+++++
T Consensus 715 ~Kvmeld 721 (726)
T PRK15061 715 TKVMNLD 721 (726)
T ss_pred HHHHhCC
Confidence 9999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.9e-31 Score=262.54 Aligned_cols=251 Identities=21% Similarity=0.299 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHhhCc--------cchhhhHHhhhccccc-------cCCCcceeccCCCCccccccCCCCCCCchhhHHH
Q 018873 42 NIIREVLKNAFLSDI--------RIGASLIRLHFHDCFV-------NGCDASILLDNTTTIVSEKFAGPNINSARGFEVV 106 (349)
Q Consensus 42 ~iVr~~v~~~~~~~~--------~~aa~lLRL~FHDcfv-------~GcDgSill~~~~~~~~E~~~~~N~~~~~g~~~I 106 (349)
..|+..+...+.... ..+|.+|||+||-+.+ +|..+. .-+|.++.++|.|.++.+++.++
T Consensus 70 ~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G-----~qRFaPlnSWPDN~nLDKarRLL 144 (730)
T COG0376 70 AAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGG-----QQRFAPLNSWPDNANLDKARRLL 144 (730)
T ss_pred HHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCC-----ceecccccCCCcccchHHHHHHh
Confidence 366777777777553 4799999999999875 233221 23467899999999999999999
Q ss_pred HHHHHHHHhhCCCCCcHHHHHHHhhhhHHhhcCCCcceeccCCCCCCCcccc----------------------------
Q 018873 107 DDMKAAVERACPGVVSCADILTIAAEESVALSGGPSWTNLLGRRDSRTANRT---------------------------- 158 (349)
Q Consensus 107 ~~iK~~le~~cp~~VScADilalAardaV~~~GGP~~~v~~GRrD~~~s~~~---------------------------- 158 (349)
.+||+++ +..||+||+|.|++..|++.+|++++.+..||.|-..+...
T Consensus 145 WPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaav 220 (730)
T COG0376 145 WPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAV 220 (730)
T ss_pred hhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhh
Confidence 9999986 56899999999999999999999999999999998776540
Q ss_pred ---------cccCCCCCCCCCHHHHHHHHHHcCCCCccchhhhc-cccccccccccccccccccCCCCCCCCCCCCHHHH
Q 018873 159 ---------LANENLPGPNNTLTRLKDRFRNVGLNDNFDLVALS-GAHTFGRAQCRTFSDRLFNFNNTGNPDPTLNTTLL 228 (349)
Q Consensus 159 ---------~~~~~lP~p~~~~~~l~~~F~~~Glt~~~e~VaLs-GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~ 228 (349)
+-++..|+|..+..++++.|++|+|+++ |.|||+ ||||+|++|...-.+.+ +++|.-.+--.
T Consensus 221 qMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDe-ETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~ 292 (730)
T COG0376 221 QMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDE-ETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQ 292 (730)
T ss_pred eeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcH-hhhhhhhcccccccccCCCchhhc-------CCCccccchhh
Confidence 1134589999999999999999999999 999999 69999999976532222 35665555444
Q ss_pred HHH--HHhCCCCCCCCc----ccccCCCCCCccChHHHHHhhhc-----------------------------------c
Q 018873 229 QQL--RQLCPQGGNGSV----LTNLDVTTPDLFDNKYFFNLQIR-----------------------------------K 267 (349)
Q Consensus 229 ~~L--~~~Cp~~~~~~~----~~~lD~~Tp~~FDN~Yy~~l~~~-----------------------------------~ 267 (349)
+.| ++.|-.+.+..+ ....+..||++|||.||.+|+.. -
T Consensus 293 qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p 372 (730)
T COG0376 293 QGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGP 372 (730)
T ss_pred hccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCc
Confidence 544 345544333211 12334579999999999999853 1
Q ss_pred cccccchhhccCCccchHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 018873 268 GLLQSDQELFSTPGADTAAIVNVFSSNQAAFFQSFVISMIRMGN 311 (349)
Q Consensus 268 glL~SD~~L~~d~~a~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 311 (349)
.||++|.+|.-|| ..+++.++|..|++.|.+.|++||.||.+
T Consensus 373 ~MlttDlaLr~DP--~Y~kIs~rf~e~pd~F~~~FArAWfKLtH 414 (730)
T COG0376 373 MMLTTDLALRFDP--EYEKISRRFLEDPDEFADAFARAWFKLTH 414 (730)
T ss_pred eeeccchhhhcCh--HHHHHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 5899999999999 99999999999999999999999999987
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.21 E-value=1e-10 Score=118.46 Aligned_cols=217 Identities=21% Similarity=0.266 Sum_probs=151.4
Q ss_pred HHHHHHHhhCccchhhhHHhhhccccc-------cCCCcc-eeccCCCCccccccCCCCCC--CchhhHHHHHHHHHHHh
Q 018873 46 EVLKNAFLSDIRIGASLIRLHFHDCFV-------NGCDAS-ILLDNTTTIVSEKFAGPNIN--SARGFEVVDDMKAAVER 115 (349)
Q Consensus 46 ~~v~~~~~~~~~~aa~lLRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~~--~~~g~~~I~~iK~~le~ 115 (349)
..+++.+....-....|+-.+|--+-+ +|.+|. |.|. +.|+++.|.. +.+-+.+++.|.+..+
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 466777777777788899999987743 566665 4454 6789999963 3357788888888876
Q ss_pred hCCCCCcHHHHHHHhhhhHHhhc---CCCcc--eeccCCCCCCCcccccccC-CC-CCC------------CCCHHHHHH
Q 018873 116 ACPGVVSCADILTIAAEESVALS---GGPSW--TNLLGRRDSRTANRTLANE-NL-PGP------------NNTLTRLKD 176 (349)
Q Consensus 116 ~cp~~VScADilalAardaV~~~---GGP~~--~v~~GRrD~~~s~~~~~~~-~l-P~p------------~~~~~~l~~ 176 (349)
..||.||+|+|++..+|+.+ +|-.+ ++.+||.|..........- .| |-. ...-.-|++
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvD 601 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVD 601 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHH
Confidence 37999999999999999986 67655 5568999997664321100 01 211 123445567
Q ss_pred HHHHcCCCCccchhhhcccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCCCCCcccccCCCCCCcc
Q 018873 177 RFRNVGLNDNFDLVALSGAH-TFGRAQCRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDLF 255 (349)
Q Consensus 177 ~F~~~Glt~~~e~VaLsGaH-TiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~F 255 (349)
.=+-.+||.. ||++|.||- .+|.-+ .| ....+.-| .|..+
T Consensus 602 kAqlL~Ltap-emtVLiGGlRvLg~n~-----------g~-------------------------s~~GVfT~--~pg~L 642 (730)
T COG0376 602 KAQLLTLTAP-EMTVLIGGLRVLGANY-----------GG-------------------------SKHGVFTD--RPGVL 642 (730)
T ss_pred HHHHhccCCc-cceEEEcceEeeccCC-----------CC-------------------------Cccceecc--Ccccc
Confidence 7778999999 999999874 444322 11 11123333 57777
Q ss_pred ChHHHHHhhhcc--------------------cc-----cccchhhccCCccchHHHHHHhhhc--HHHHHHHHHHHHHH
Q 018873 256 DNKYFFNLQIRK--------------------GL-----LQSDQELFSTPGADTAAIVNVFSSN--QAAFFQSFVISMIR 308 (349)
Q Consensus 256 DN~Yy~~l~~~~--------------------gl-----L~SD~~L~~d~~a~t~~~V~~yA~d--~~~F~~~Fa~Am~K 308 (349)
.|.||.||+... |- -..|..+-+++ ..|.+.+-||.| ++.|.+||+.||.|
T Consensus 643 tndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns--~LRA~aEVYa~dda~ekFv~DFvaaw~k 720 (730)
T COG0376 643 TNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNS--ELRALAEVYASDDAKEKFVKDFVAAWTK 720 (730)
T ss_pred cchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcH--HHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 788888887521 21 23566666677 899999999976 78999999999999
Q ss_pred hhcCC
Q 018873 309 MGNLR 313 (349)
Q Consensus 309 m~~lg 313 (349)
..++.
T Consensus 721 VMn~D 725 (730)
T COG0376 721 VMNLD 725 (730)
T ss_pred Hhccc
Confidence 98875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=78.32 E-value=15 Score=36.66 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=67.5
Q ss_pred cCCCcceeccCCCCCCCcccccccCCCCCC---CCCHHHHHHHHHHcCCCCc---------cchhhhccccccccccccc
Q 018873 138 SGGPSWTNLLGRRDSRTANRTLANENLPGP---NNTLTRLKDRFRNVGLNDN---------FDLVALSGAHTFGRAQCRT 205 (349)
Q Consensus 138 ~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Glt~~---------~e~VaLsGaHTiG~~hc~~ 205 (349)
+|-..+..++||-+-..-.........+.. -..+.++.+.|++.|+..+ .|+..|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l------- 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL------- 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE-------
Confidence 477888999999865432221111111211 2357788889999998654 044445555432
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHhC-CCCC---CCCcccccCCCCCCccChHHHHHhhhcccccccchhhccCCc
Q 018873 206 FSDRLFNFNNTGNPDPTLNTTLLQQLRQLC-PQGG---NGSVLTNLDVTTPDLFDNKYFFNLQIRKGLLQSDQELFSTPG 281 (349)
Q Consensus 206 f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~C-p~~~---~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~ 281 (349)
+++|...+.|...- ..-. .+.. ..-....+..+|-..|+......+| = -.
T Consensus 253 ----------------Ti~p~ll~~L~~~~~~~~~~~l~~~~-~~~~~~~~~~~~e~~fr~~~~~d~m------a--~e- 306 (333)
T PTZ00411 253 ----------------TISPKLLEELANTEDGPVERKLDPEK-LTEDTEKLPELTEKEFRWELNEDAM------A--TE- 306 (333)
T ss_pred ----------------eCCHHHHHHHHhCCCcccCcccCccc-ccccccccCCCCHHHHHHHhCCCcc------h--HH-
Confidence 35566667665432 1100 0000 0001112345688888654322222 1 11
Q ss_pred cchHHHHHHhhhcHHHHHHHHH
Q 018873 282 ADTAAIVNVFSSNQAAFFQSFV 303 (349)
Q Consensus 282 a~t~~~V~~yA~d~~~F~~~Fa 303 (349)
+..+-++.|+.|+....+-..
T Consensus 307 -kl~~gir~F~~d~~~Le~~i~ 327 (333)
T PTZ00411 307 -KLAEGIRNFAKDLEKLENVIR 327 (333)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH
Confidence 455667788887766554443
No 20
>PRK12346 transaldolase A; Provisional
Probab=63.88 E-value=35 Score=33.76 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=38.4
Q ss_pred CCcHHHHHHHhhhhHH--hhcCCCcceeccCCCCCCCcccccccCCCCC----CCCCHHHHHHHHHHcCCCCc
Q 018873 120 VVSCADILTIAAEESV--ALSGGPSWTNLLGRRDSRTANRTLANENLPG----PNNTLTRLKDRFRNVGLNDN 186 (349)
Q Consensus 120 ~VScADilalAardaV--~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Glt~~ 186 (349)
.|+|-=.+.+...-++ ..+|-..+..++||-|-........ ..++. +-..+.++.+.|++.|+..+
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~ 220 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPM-DPYVVEEDPGVKSVRNIYDYYKQHRYETI 220 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhcccc-ccccccCCChHHHHHHHHHHHHHcCCCcE
Confidence 3444444444444433 3358888999999988653321110 11211 12458888889999998654
No 21
>PRK05269 transaldolase B; Provisional
Probab=63.69 E-value=40 Score=33.39 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=31.1
Q ss_pred hcCCCcceeccCCCCCCCcccccccCCCC---CCCCCHHHHHHHHHHcCCCCc
Q 018873 137 LSGGPSWTNLLGRRDSRTANRTLANENLP---GPNNTLTRLKDRFRNVGLNDN 186 (349)
Q Consensus 137 ~~GGP~~~v~~GRrD~~~s~~~~~~~~lP---~p~~~~~~l~~~F~~~Glt~~ 186 (349)
.+|-..+..+.||-|-..-...+....-+ ++-..+.++.+.|++.|+..+
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 34888899999998764221110000011 123468888899999998766
No 22
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=61.89 E-value=77 Score=32.29 Aligned_cols=48 Identities=17% Similarity=0.357 Sum_probs=31.1
Q ss_pred cCCCcceeccCCCCCCCcccccccCCCCCCC----CCHHHHHHHHHHcCCCCc
Q 018873 138 SGGPSWTNLLGRRDSRTANRTLANENLPGPN----NTLTRLKDRFRNVGLNDN 186 (349)
Q Consensus 138 ~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~----~~~~~l~~~F~~~Glt~~ 186 (349)
+|-..+..+.||-|-..-...+ ...+|... ..+.++.+.|++.|+..+
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g-~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~ 225 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETG-RDSYPGAEDPGVQSVTQIYNYYKKFGYKTE 225 (391)
T ss_pred cCCCEEEeecchhhhhhhhccC-CCccccccchHHHHHHHHHHHHHhcCCCcE
Confidence 5888899999998774432211 01234322 258888889999988655
No 23
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=60.25 E-value=64 Score=31.99 Aligned_cols=128 Identities=15% Similarity=0.202 Sum_probs=67.1
Q ss_pred hcCCCcceeccCCCCCCCcccccccCCCC----CCCCCHHHHHHHHHHcCCCCccch----------hhhcccccccccc
Q 018873 137 LSGGPSWTNLLGRRDSRTANRTLANENLP----GPNNTLTRLKDRFRNVGLNDNFDL----------VALSGAHTFGRAQ 202 (349)
Q Consensus 137 ~~GGP~~~v~~GRrD~~~s~~~~~~~~lP----~p~~~~~~l~~~F~~~Glt~~~e~----------VaLsGaHTiG~~h 202 (349)
.+|-..+..+.||-|-..-...+.. ..+ ++-..+.++.+.|++.|+..+ =| .+|.|+|.
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~-~~~~~~d~Gv~~v~~i~~~~k~~g~~T~-Im~ASfRn~~qv~~laG~d~----- 239 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKK-EYSIEEDPGVASVKKIYNYYKKHGYPTE-VMGASFRNKEEILALAGCDR----- 239 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCcc-ccccccCchHHHHHHHHHHHHHcCCCcE-EEeeccCCHHHHHHHHCCCe-----
Confidence 4588889999999876422211000 111 123468888899999998765 23 23333321
Q ss_pred ccccccccccCCCCCCCCCCCCHHHHHHHHHhCCCCC---CCCcccccCCCCCCccChHHHHHhhhcccccccchhhccC
Q 018873 203 CRTFSDRLFNFNNTGNPDPTLNTTLLQQLRQLCPQGG---NGSVLTNLDVTTPDLFDNKYFFNLQIRKGLLQSDQELFST 279 (349)
Q Consensus 203 c~~f~~Rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~---~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d 279 (349)
=+++|...++|...-..-. ........+ .-|..+|...|+......+| ..
T Consensus 240 ------------------~Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~-~~~~~~~e~~fr~~~~~d~m-------a~- 292 (317)
T TIGR00874 240 ------------------LTISPALLDELKESTGPVERKLDPESAKKVD-KQPIILDESEFRFLHNEDAM-------AT- 292 (317)
T ss_pred ------------------EeCCHHHHHHHHhCCCCcCccCCcccccccc-ccCCCCCHHHHHHHhCCCcc-------hH-
Confidence 1566777777754321100 000000011 22456788888654433322 11
Q ss_pred CccchHHHHHHhhhcHHHHHH
Q 018873 280 PGADTAAIVNVFSSNQAAFFQ 300 (349)
Q Consensus 280 ~~a~t~~~V~~yA~d~~~F~~ 300 (349)
. +..+-++.|+.|+....+
T Consensus 293 e--kl~~gir~F~~d~~~Le~ 311 (317)
T TIGR00874 293 E--KLAEGIRKFAADQEKLEK 311 (317)
T ss_pred H--HHHHHHHHHHHHHHHHHH
Confidence 1 355666778877765544
No 24
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.68 E-value=6 Score=32.29 Aligned_cols=28 Identities=39% Similarity=0.466 Sum_probs=14.2
Q ss_pred CccHHHHHHHHHHHHHHHhcCCccccCC
Q 018873 1 MASLRYLLAAALVVAFVLEGSSPAQAQL 28 (349)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L 28 (349)
|||=.+++++++++++|++++..++.+|
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 7833445555555555555544444344
No 25
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=55.25 E-value=12 Score=29.68 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCccccccccccC
Q 018873 297 AFFQSFVISMIRMGNLRPLTGNQGEIRLNCRRVNG 331 (349)
Q Consensus 297 ~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~n~ 331 (349)
.....|..||.||+.||... .---+|+.|-.
T Consensus 2 ~m~~~F~~am~KlavLG~d~----~~LiDCSdVIP 32 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHDR----SDLIDCSDVIP 32 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-G----GGSEE-GGGS-
T ss_pred hHHHHHHHHHHHHHHhcCCh----hhcccchhhcc
Confidence 35679999999999998542 33668988874
No 26
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.82 E-value=25 Score=27.21 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhCccchhhhHHhhhccc
Q 018873 43 IIREVLKNAFLSDIRIGASLIRLHFHDC 70 (349)
Q Consensus 43 iVr~~v~~~~~~~~~~aa~lLRL~FHDc 70 (349)
|.|+.+++.++++|.+-...||+-+---
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qm 51 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQM 51 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999988654
No 27
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=47.68 E-value=61 Score=32.05 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=36.7
Q ss_pred CcHHHHHHHhhhhHHh--hcCCCcceeccCCCCCCCcccccccCCCCC----CCCCHHHHHHHHHHcCCCCc
Q 018873 121 VSCADILTIAAEESVA--LSGGPSWTNLLGRRDSRTANRTLANENLPG----PNNTLTRLKDRFRNVGLNDN 186 (349)
Q Consensus 121 VScADilalAardaV~--~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Glt~~ 186 (349)
|+|-=.+.+....|+. .+|-..+..++||-|-..-..... ...+. +-..+.++.+.|++.|+..+
T Consensus 149 I~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~ 219 (313)
T cd00957 149 IHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGD-KAYTAEEDPGVASVKKIYNYYKKFGYKTK 219 (313)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhcccc-ccCCccCCcHHHHHHHHHHHHHHcCCCcE
Confidence 4444434444333332 347788899999987543221110 01111 22358888889999998766
No 28
>PRK01844 hypothetical protein; Provisional
Probab=26.00 E-value=1.1e+02 Score=23.77 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhCccchhhhHHhhhccc
Q 018873 43 IIREVLKNAFLSDIRIGASLIRLHFHDC 70 (349)
Q Consensus 43 iVr~~v~~~~~~~~~~aa~lLRL~FHDc 70 (349)
+-|+.+++.++++|.+-...||.-+---
T Consensus 24 ~ark~~~k~lk~NPpine~mir~Mm~QM 51 (72)
T PRK01844 24 IARKYMMNYLQKNPPINEQMLKMMMMQM 51 (72)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 7789999999999999999999887654
No 29
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=24.69 E-value=41 Score=29.26 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHcCCCCccch-hhhcccccccccc
Q 018873 169 NTLTRLKDRFRNVGLNDNFDL-VALSGAHTFGRAQ 202 (349)
Q Consensus 169 ~~~~~l~~~F~~~Glt~~~e~-VaLsGaHTiG~~h 202 (349)
+++.+-+-.|+++||++. ++ |.|--+|-||++.
T Consensus 31 ddvkeqI~K~akKGltps-qIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPS-QIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChh-HceeeeecccCcchhh
Confidence 345666668999999998 86 4455899999876
No 30
>PRK00523 hypothetical protein; Provisional
Probab=22.66 E-value=1.5e+02 Score=23.07 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhCccchhhhHHhhhccc
Q 018873 43 IIREVLKNAFLSDIRIGASLIRLHFHDC 70 (349)
Q Consensus 43 iVr~~v~~~~~~~~~~aa~lLRL~FHDc 70 (349)
+-|+.+++.++++|.+-...||.-+---
T Consensus 25 iark~~~k~l~~NPpine~mir~M~~QM 52 (72)
T PRK00523 25 VSKKMFKKQIRENPPITENMIRAMYMQM 52 (72)
T ss_pred HHHHHHHHHHHHCcCCCHHHHHHHHHHh
Confidence 7789999999999999999999887644
No 31
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.56 E-value=1.3e+02 Score=26.02 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=17.3
Q ss_pred HHHHHHHHHcC-CCCccchhhhcccc
Q 018873 172 TRLKDRFRNVG-LNDNFDLVALSGAH 196 (349)
Q Consensus 172 ~~l~~~F~~~G-lt~~~e~VaLsGaH 196 (349)
.+++++=+..| +|.. ||++++|+|
T Consensus 15 ~rIvElVRe~GRiTi~-ql~~~TGas 39 (127)
T PF06163_consen 15 ARIVELVREHGRITIK-QLVAKTGAS 39 (127)
T ss_pred HHHHHHHHHcCCccHH-HHHHHHCCC
Confidence 34556666666 7788 999999875
Done!