BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018874
(349 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 226/388 (58%), Positives = 262/388 (67%), Gaps = 48/388 (12%)
Query: 3 YSRDSSENVVHII-VGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSE 61
+ RDS +VVH+I N P++W PN DS+VWATEDDY + + + T ++
Sbjct: 4 HRRDSGGDVVHVIPTNNPPPDNWFPNLGDSAVWATEDDY-----NRAWAMNPDNTSGDNN 58
Query: 62 QPPNKKSRNG--------SQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIE 113
PPNKK+R + ++++KAIGKMFFKTKLCCKFR GTCPYITNCNFAH++E
Sbjct: 59 GPPNKKTRGSPSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVE 118
Query: 114 ELRRPPPNWQEIVAAHEEERA--------STNEIPREEFQIPSIVSTNFAVETQRSYKGR 165
ELRRPPPNWQEIVAAHEEER+ S EIPREEFQIPS+VS+ E+ RS+KGR
Sbjct: 119 ELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSS--TAESGRSFKGR 176
Query: 166 HCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGG---------------- 209
HCKKFYTEEGCPYGE+CTFLHDE S+NRESVAISLGPGGYG GG
Sbjct: 177 HCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSS 236
Query: 210 -----AAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGG 264
+G+ G+ +KPSNWKTRICNKWE+TGYCPFG KCHFAHG ELHRFGGG
Sbjct: 237 NVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGG 296
Query: 265 LVESENNDSSAAPSDSKLVGVPSKTPVDTVVASVTSVPH-ADV-YHMGVPSQR-SSIVVQ 321
LVE E D + D+K K DT VPH AD YH GV QR SS V Q
Sbjct: 297 LVEEEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRASSAVTQ 356
Query: 322 RPGQRSHEKWKGPDKISRIYGDWIDDIE 349
+PG R+H+KWKGP KISRIYGDWIDDIE
Sbjct: 357 KPGIRTHQKWKGPAKISRIYGDWIDDIE 384
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/370 (55%), Positives = 245/370 (66%), Gaps = 37/370 (10%)
Query: 10 NVVHIIVGNGAPEHWI---PNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNK 66
N +HII P+ W D+ +WATEDDY + + S + + PP K
Sbjct: 5 NAIHIIPDAAGPDAWANAAAQGGDAGIWATEDDY-NSQWNADGGGGGSSRAGSEQPPPGK 63
Query: 67 KSRNGSQDV----NSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNW 122
KSR G SKS+AIGKMFFKTKLCCKFR GTCPY+TNCNFAH +EELR+PPPNW
Sbjct: 64 KSRGGGGGEGGGNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNW 123
Query: 123 QEIVAAHEEERASTNEIPREEFQIPSIVSTN------------FAVETQRSYKGRHCKKF 170
QEIVAAHEE + REE QIP + S+ + R+YKGRHCKKF
Sbjct: 124 QEIVAAHEEATEA-----REEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKF 178
Query: 171 YTEEGCPYGENCTFLHDEQSKNRESVAISLGPG--------GYGGGGAAAAAAGNNIGVS 222
YT+EGCPYG+ CTFLHDEQSK RESVAISL P Y AAAA+A G
Sbjct: 179 YTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGGGGSYNSAAAAAASASAAAGNG 238
Query: 223 NV-KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSK 281
+ KPSNWKTRICNKWE+TGYCPFG+KCHFAHG ELH++GGGLV+ ++ D++A P DSK
Sbjct: 239 PMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATP-DSK 297
Query: 282 LVGVPSKTPVDTVVASVTSVPHADVYHMGVPSQRSSIVVQRPG--QRSHEKWKGPDKISR 339
V +K P +T AS T +PHADVYH+GV +QRS+I QR G QR +KWKGPDKISR
Sbjct: 298 QAVVSAKAPAETAAASTTVLPHADVYHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISR 357
Query: 340 IYGDWIDDIE 349
IYGDWID+ E
Sbjct: 358 IYGDWIDETE 367
>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis
thaliana GN=At3g19360 PE=2 SV=1
Length = 386
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 112/295 (37%), Positives = 151/295 (51%), Gaps = 42/295 (14%)
Query: 79 SKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIV----AAHEEERA 134
+K +F+KT++C KFR GTC CNFAH IE+LR+PP NWQEIV A + ER
Sbjct: 97 NKGTANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERE 156
Query: 135 STNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQS---- 190
E RE + +V+ N+ + + + + C+KF E CPYG+ C F+H++ S
Sbjct: 157 RERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFRE 216
Query: 191 ---KNRESVAISLGPGGYG--------------GGGAAAAAAGNNIGVSNVKPSNWKTRI 233
K RES IS+G G A NN GV VK WKTR+
Sbjct: 217 DSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGV--VKTVYWKTRL 274
Query: 234 CNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSKLVGVPSKTPVDT 293
C K+++TG CPFG+KCHFAHG ELH G VE E ++ A S +K VP+
Sbjct: 275 CMKFDITGQCPFGDKCHFAHGQAELHN-SVGRVEGEAMNAVA--SVNKQAVVPANEAF-- 329
Query: 294 VVASVTSVPHADVYHMGVPSQRSSIVVQRPGQRSHEKWKGPDKISRIYGDWIDDI 348
+ +T V AD + +R ++ KW KI+RIYGDWIDD+
Sbjct: 330 AMKPITQV-TADSSGLNEEGRRKKCLL---------KWSDSKKINRIYGDWIDDL 374
>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis
thaliana GN=At2g35430 PE=2 SV=1
Length = 252
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 115/210 (54%), Gaps = 51/210 (24%)
Query: 162 YKGRHCKKFYTEEGCPY-GENCTFLHD-------------------EQSKNRESVAISLG 201
+K + C KF CPY +C F H E S+NRES A+SLG
Sbjct: 72 FKTKLCFKFRAGT-CPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLG 130
Query: 202 PGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRF 261
P G N+ +K NWKTRICNKW+ TGYCPFG+ CHFAHG ELH F
Sbjct: 131 PRG-------------NV-AQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTF 176
Query: 262 GGGLVESENNDSSAAPSDSKLVGVPSKTPVDTVVASVTSVPHADVYHMGVPSQR-SSIVV 320
GGGLVE E ++A D+K G VDTV + V+ GV SQR SS V
Sbjct: 177 GGGLVEGECKIGTSATLDTKQRG-----QVDTVTSLVSP---------GVSSQRTSSAVT 222
Query: 321 QRP-GQRSHEKWKGPDKISRIYGDWIDDIE 349
Q+P G R+ KWKGPDKISR+YGDWIDDIE
Sbjct: 223 QKPNGVRTQRKWKGPDKISRVYGDWIDDIE 252
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 102/193 (52%), Gaps = 32/193 (16%)
Query: 1 MSYSRDSSENVVHI-IVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSN 59
MS+ RD + VH+ I + PE+ PN DSSVWATEDDY S +
Sbjct: 1 MSHRRDYGSDAVHVRITHDPPPENCFPNSGDSSVWATEDDY---------SRVWAINSDG 51
Query: 60 SEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPY-ITNCNFAHSIEELR-- 116
+E P K + S + IGK FFKTKLC KFR GTCPY ++C+FAHS EELR
Sbjct: 52 AESPSKKTRSSSSSE-------IGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLP 104
Query: 117 -RPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRS--YKGRHCKKFYTE 173
PPPNWQE V AS N RE F + N A +T +S +K R C K+ T
Sbjct: 105 PPPPPNWQETVT-----EASRN---RESFAVSLGPRGNVA-QTLKSPNWKTRICNKWQTT 155
Query: 174 EGCPYGENCTFLH 186
CP+G +C F H
Sbjct: 156 GYCPFGSHCHFAH 168
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 224 VKPSNWKTRICNKWELTGYCPF-GNKCHFAHGIQEL 258
+ S +KT++C K+ G CP+ + CHFAH +EL
Sbjct: 67 IGKSFFKTKLCFKFR-AGTCPYSASSCHFAHSAEEL 101
Score = 31.6 bits (70), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEEL 115
+KT++C K++ G CP+ ++C+FAH EL
Sbjct: 144 WKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa
subsp. japonica GN=Os02g0194200 PE=2 SV=1
Length = 300
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 25/118 (21%)
Query: 155 AVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGG------- 207
+ +T K + C KF++ GCP+GE C FLH PGGY
Sbjct: 27 SFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHF-------------PGGYQAVAKMTNL 73
Query: 208 GGAAAAAAGNNIGVSNVKPS-----NWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
GG A A + + N P KTR+CNK+ C +G+KCHFAHG +EL +
Sbjct: 74 GGPAIAPPPGRMPMGNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGERELGK 131
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
SN+KT++C + G C FG++CHFAHG EL +
Sbjct: 264 SNFKTKLCENFT-KGSCTFGDRCHFAHGENELRK 296
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRR 117
FKTKLC F G+C + C+FAH ELR+
Sbjct: 266 FKTKLCENFTKGSCTFGDRCHFAHGENELRK 296
Score = 38.5 bits (88), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 88 KTKLCCKFRNGT-CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQI 146
K+K C KF + + CP+ C+F H P + VA P +
Sbjct: 35 KSKPCTKFFSTSGCPFGEGCHFLHHF-------PGGYQAVAKMTNLGGPAIAPPPGRMPM 87
Query: 147 PSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
+ V T ++ R C K+ T EGC +G+ C F H E+
Sbjct: 88 GNAVPDGPPTPTVKT---RLCNKYNTAEGCKWGDKCHFAHGER 127
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 230 KTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSKLVGVPSKT 289
K++ C K+ T CPFG CHF LH F GG + P+ + P +
Sbjct: 35 KSKPCTKFFSTSGCPFGEGCHF------LHHFPGGYQAVAKMTNLGGPA---IAPPPGRM 85
Query: 290 PVDTVV 295
P+ V
Sbjct: 86 PMGNAV 91
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 167 CKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGN---NIGVSN 223
C KF++ GCP+G +C FLH+ + + ++ GG A AA G G N
Sbjct: 38 CTKFFSTSGCPFGSSCHFLHNFPGGYQAAAKMT-----SHGGTAVAAPPGRMPLGPGAPN 92
Query: 224 VKP-SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
P S+ KTR+CNK+ C +G+KCHFAHG +EL +
Sbjct: 93 GPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGERELGK 130
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 57 RSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELR 116
R + PP K GS S FKTKLC F G+C + C+FAH ELR
Sbjct: 236 RISGNAPPAKNPGRGSHAGGPGSN------FKTKLCENFNKGSCTFGDRCHFAHGESELR 289
Query: 117 RPP 119
+PP
Sbjct: 290 KPP 292
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
SN+KT++C + G C FG++CHFAHG EL +
Sbjct: 258 SNFKTKLCENFN-KGSCTFGDRCHFAHGESELRK 290
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 88 KTKLCCKFRNGT-CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQI 146
K K C KF + + CP+ ++C+F H+ P +Q AA + + ++
Sbjct: 34 KLKPCTKFFSTSGCPFGSSCHFLHNF------PGGYQ---AAAKMTSHGGTAVAAPPGRM 84
Query: 147 PSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
P T S K R C K+ T EGC +G C F H E+
Sbjct: 85 PLGPGAPNGPPTS-SVKTRMCNKYNTAEGCKWGSKCHFAHGER 126
>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa
subsp. japonica GN=Os04g0665700 PE=2 SV=1
Length = 309
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 155 AVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAA 214
+ +T S K + C KF++ GCP+GE C F H ++VA +L G A A
Sbjct: 31 SFQTGLSSKLKPCTKFFSTIGCPFGEGCHFSHFVPG-GYQAVAKTLNLGNPAVPAPARAP 89
Query: 215 AGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
+ G ++ S+ KTR+C K+ C FG+KCHFAHG +EL +
Sbjct: 90 MDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGERELGK 135
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
N+KT++C + + G C FG++CHFAHG E
Sbjct: 275 NYKTKLCENF-VKGTCTFGDRCHFAHGENE 303
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRR 117
+KTKLC F GTC + C+FAH E R+
Sbjct: 276 YKTKLCENFVKGTCTFGDRCHFAHGENEQRK 306
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 203 GGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
GG G A A + + +KT +CNKWE TG CP+G++C FAHG+ EL
Sbjct: 233 GGKKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTEL 288
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 37/119 (31%)
Query: 147 PSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYG 206
P+ V Q +K C K+ CPYG+ C F H
Sbjct: 244 PADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAH-------------------- 283
Query: 207 GGGAAAAAAGNNIGVSNVKPS----NWKTRICNKWELTGYCPFGNKCHFAHGIQELHRF 261
GV+ ++P +KT +C CP+G++CHF H + R
Sbjct: 284 -------------GVTELRPVIRHPRYKTAVCRMVLAGDVCPYGHRCHFRHSLTPAERL 329
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 56/148 (37%), Gaps = 50/148 (33%)
Query: 51 NCQSQTRSNSEQPPN-KKSRNGSQ----------DVNSKSKAIGKMFFKTKLCCKFR-NG 98
N + +T SN PPN +++ +G + D ++ + + FKT+LC K+ G
Sbjct: 212 NRKPRTSSNPTNPPNSQRAYDGGKKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEETG 271
Query: 99 TCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVET 158
CPY C FAH + ELR V H PR
Sbjct: 272 DCPYGDQCQFAHGVTELR--------PVIRH----------PR----------------- 296
Query: 159 QRSYKGRHCKKFYTEEGCPYGENCTFLH 186
YK C+ + CPYG C F H
Sbjct: 297 ---YKTAVCRMVLAGDVCPYGHRCHFRH 321
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 229 WKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
+KT +CNKWE TG CP+G++C FAHG+ EL
Sbjct: 269 FKTELCNKWEETGACPYGDQCQFAHGVAEL 298
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 37/122 (30%)
Query: 147 PSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYG 206
P + F V Q +K C K+ CPYG+ C F H
Sbjct: 254 PPMGGLEFEVYNQGMFKTELCNKWEETGACPYGDQCQFAH-------------------- 293
Query: 207 GGGAAAAAAGNNIGVSNVKPS----NWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFG 262
GV+ ++P +KT++C G CP+G++CHF H I RF
Sbjct: 294 -------------GVAELRPVIRHPRYKTQVCRMVLAGGVCPYGHRCHFRHSITPADRFS 340
Query: 263 GG 264
G
Sbjct: 341 FG 342
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 39/113 (34%), Gaps = 39/113 (34%)
Query: 86 FFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEF 144
FKT+LC K+ G CPY C FAH + ELR V H PR
Sbjct: 268 MFKTELCNKWEETGACPYGDQCQFAHGVAELR--------PVIRH----------PR--- 306
Query: 145 QIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVA 197
YK + C+ CPYG C F H +R S
Sbjct: 307 -----------------YKTQVCRMVLAGGVCPYGHRCHFRHSITPADRFSFG 342
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 230 KTRICNKWELTGYCPFGNKCHFAHGIQEL 258
KT +CNKW+ TG CP+G+ C FAHGI+EL
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKEL 252
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 43/107 (40%), Gaps = 41/107 (38%)
Query: 88 KTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQI 146
KT+LC K++ GTCPY +C FAH I+EL RP V H PR
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKEL-RP-------VIRH----------PR----- 260
Query: 147 PSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLH--DEQSK 191
YK C+ + CPYG C F H EQ K
Sbjct: 261 ---------------YKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEK 292
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 37/110 (33%)
Query: 156 VETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAA 215
V Q K C K+ CPYG++C F H
Sbjct: 217 VYNQGMTKTELCNKWQETGTCPYGDHCQFAH----------------------------- 247
Query: 216 GNNIGVSNVKPS----NWKTRICNKWELTGYCPFGNKCHFAHGIQELHRF 261
G+ ++P +KT +C CP+G++CHF H + E +
Sbjct: 248 ----GIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKL 293
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 33/95 (34%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F + CPYG C F H +G
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAH-------------------------------GLGE 198
Query: 222 SNVKPS--NWKTRICNKWELTGYCPFGNKCHFAHG 254
VK S N++T+ C WE GYCP+G +C F HG
Sbjct: 199 LKVKKSCKNFRTKPCVNWEKLGYCPYGRRCCFKHG 233
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 229 WKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
+KT +C + L G CP+G+KC FAHG+ EL
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAHGLGEL 199
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 75 VNSKSKAIGKMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELR----------RPPPNWQ 123
V S+ + K +KT+LC F G+CPY + C FAH + EL+ +P NW+
Sbjct: 158 VKSQVQETPKQLYKTELCESFTLKGSCPYGSKCQFAHGLGELKVKKSCKNFRTKPCVNWE 217
Query: 124 EI 125
++
Sbjct: 218 KL 219
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 216 GNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELH 259
G + V + KT +CNKWE G CP+G +C FAHG+QEL
Sbjct: 370 GGEVEVEAYRQGAAKTELCNKWE-RGACPYGARCRFAHGLQELR 412
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 44/146 (30%)
Query: 47 ISNSNCQSQTRSNSEQPPNKKSRNGSQDVNSKS------KAIGKMFFKTKLCCKFRNGTC 100
IS+ NC N P + +D K +A + KT+LC K+ G C
Sbjct: 337 ISHPNCLIFVMGNQCSPKEAAAAGDEEDEEDKGGGEVEVEAYRQGAAKTELCNKWERGAC 396
Query: 101 PYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQR 160
PY C FAH ++ELR V H PR
Sbjct: 397 PYGARCRFAHGLQELR--------PVIRH----------PR------------------- 419
Query: 161 SYKGRHCKKFYTEEGCPYGENCTFLH 186
YK C+ F GCPYG C F H
Sbjct: 420 -YKTLPCQMFAAASGCPYGHRCHFRH 444
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 38/99 (38%)
Query: 159 QRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNN 218
Q + K C K + CPYG C F H
Sbjct: 380 QGAAKTELCNK-WERGACPYGARCRFAH-------------------------------- 406
Query: 219 IGVSNVKP----SNWKTRICNKWELTGYCPFGNKCHFAH 253
G+ ++P +KT C + CP+G++CHF H
Sbjct: 407 -GLQELRPVIRHPRYKTLPCQMFAAASGCPYGHRCHFRH 444
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 51/152 (33%)
Query: 45 PSISNSNCQSQTRSNSE----QPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFR-NGT 99
PS+S+ + + + RS SE P +K + GS VNS +KT+LC F NG
Sbjct: 77 PSLSSRDSRFRDRSFSEGGERLLPTQK-QPGSGQVNSSR-------YKTELCRPFEENGA 128
Query: 100 CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQ 159
C Y C FAH I ELR ++
Sbjct: 129 CKYGDKCQFAHGIHELR--------------------------------------SLTRH 150
Query: 160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSK 191
YK C+ F+T CPYG C F+H+ + +
Sbjct: 151 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEER 182
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 29/103 (28%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YG+ C F H G +
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAH-----------------------------GIHELR 145
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGG 264
S + +KT +C + G+CP+G +CHF H +E GG
Sbjct: 146 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGG 188
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 205 YGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
+ GG G V S +KT +C +E G C +G+KC FAHGI EL
Sbjct: 91 FSEGGERLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELR 116
+KT+LC F G CPY C+F H+ EE R
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERR 183
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 51/161 (31%)
Query: 45 PSISNSNCQSQTRSNSE----QPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFR-NGT 99
P++S+ + + + RS SE P +K G Q VNS +KT+LC F NG
Sbjct: 77 PALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQ-VNSSR-------YKTELCRPFEENGA 128
Query: 100 CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQ 159
C Y C FAH I ELR ++
Sbjct: 129 CKYGDKCQFAHGIHELR--------------------------------------SLTRH 150
Query: 160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISL 200
YK C+ F+T CPYG C F+H+ + + + A L
Sbjct: 151 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGARDL 191
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 205 YGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
+ GG G V S +KT +C +E G C +G+KC FAHGI EL
Sbjct: 91 FSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 29/103 (28%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YG+ C F H G +
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAH-----------------------------GIHELR 145
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGG 264
S + +KT +C + G+CP+G +CHF H +E G
Sbjct: 146 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGA 188
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 51/152 (33%)
Query: 45 PSISNSNCQSQTRSNSE----QPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFR-NGT 99
P++S+ + + + RS SE P +K + GS VNS +KT+LC F NG
Sbjct: 77 PTLSSRDSRFRDRSFSEGGERLLPTQK-QPGSGQVNSSR-------YKTELCRPFEENGA 128
Query: 100 CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQ 159
C Y C FAH I ELR ++
Sbjct: 129 CKYGDKCQFAHGIHELR--------------------------------------SLTRH 150
Query: 160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSK 191
YK C+ F+T CPYG C F+H+ + +
Sbjct: 151 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEER 182
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 29/103 (28%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YG+ C F H G +
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAH-----------------------------GIHELR 145
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGG 264
S + +KT +C + G+CP+G +CHF H +E GG
Sbjct: 146 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGG 188
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 205 YGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
+ GG G V S +KT +C +E G C +G+KC FAHGI EL
Sbjct: 91 FSEGGERLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELR 116
+KT+LC F G CPY C+F H+ EE R
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERR 183
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 40/120 (33%)
Query: 84 KMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPRE 142
+ +KT+ C ++ +GTC Y + C FAH +EL+ PP
Sbjct: 324 RALYKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPP----------------------- 360
Query: 143 EFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGP 202
YK C+ F CPYG C FLHDE S ++S I P
Sbjct: 361 ---------------RHPKYKSERCRSFMMYGYCPYGLRCCFLHDE-SNAQKSATIKQSP 404
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 207 GGGAAAAAAGNNIGVS-NVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
G + +G++ GV+ N K + +KT C W+++G C +G+KC FAHG QEL
Sbjct: 304 GSASHPHGSGSSNGVAPNGKRALYKTEPCKNWQISGTCRYGSKCQFAHGNQEL 356
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 30/92 (32%), Gaps = 29/92 (31%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK CK + C YG C F H GN
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAH-----------------------------GNQELK 357
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAH 253
+ +K+ C + + GYCP+G +C F H
Sbjct: 358 EPPRHPKYKSERCRSFMMYGYCPYGLRCCFLH 389
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 36/114 (31%)
Query: 141 REEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISL 200
R Q+P +V+ YK C+ F + C YG C F H
Sbjct: 191 RAPLQLPQLVNKTL-------YKTELCESFTIKGYCKYGNKCQFAH-------------- 229
Query: 201 GPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHG 254
G N K +N++T+ C W GYCP+G +C F HG
Sbjct: 230 ---------------GLNELKFKKKSNNYRTKPCINWSKLGYCPYGKRCCFKHG 268
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 229 WKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
+KT +C + + GYC +GNKC FAHG+ EL
Sbjct: 205 YKTELCESFTIKGYCKYGNKCQFAHGLNEL 234
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 80 KAIGKMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELR 116
+ + K +KT+LC F G C Y C FAH + EL+
Sbjct: 198 QLVNKTLYKTELCESFTIKGYCKYGNKCQFAHGLNELK 235
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 229 WKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
KT +CNKW+ TG C +G+ C FAHGI EL
Sbjct: 233 MKTELCNKWQETGACCYGDNCQFAHGIDEL 262
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 37/120 (30%)
Query: 151 STNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGA 210
+ V Q K C K+ C YG+NC F H
Sbjct: 222 ALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAH------------------------ 257
Query: 211 AAAAAGNNIGVSNVKPS----NWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLV 266
G+ ++P +KT +C CP+G++CHF H + + R ++
Sbjct: 258 ---------GIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHFRHSLTDQERMMMMML 308
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 39/114 (34%)
Query: 86 FFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEF 144
KT+LC K++ G C Y NC FAH I+EL RP V H PR
Sbjct: 232 MMKTELCNKWQETGACCYGDNCQFAHGIDEL-RP-------VIRH----------PR--- 270
Query: 145 QIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAI 198
YK C+ T CPYG C F H + R + +
Sbjct: 271 -----------------YKTEVCRMMVTGAMCPYGHRCHFRHSLTDQERMMMMM 307
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YGE C F H G +
Sbjct: 132 YKTELCRPFEESGACKYGEKCQFAH-----------------------------GFHELR 162
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CHF H +E
Sbjct: 163 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 198
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
+ V + +KT +C +E +G C +G KC FAHG EL
Sbjct: 125 AQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHEL 161
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 39/108 (36%)
Query: 87 FKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +G C Y C FAH ELR
Sbjct: 132 YKTELCRPFEESGACKYGEKCQFAHGFHELR----------------------------- 162
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNR 193
++ YK C+ F+T CPYG C F+H+ + + +
Sbjct: 163 ---------SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRQ 201
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELRRPP 119
+KT+LC F G CPY C+F H+ EE R+ P
Sbjct: 170 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRQAP 203
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YGE C F H G +
Sbjct: 134 YKTELCRPFEENGACKYGEKCQFAH-----------------------------GFHELR 164
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CHF H +E
Sbjct: 165 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 200
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 39/106 (36%)
Query: 87 FKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F NG C Y C FAH ELR
Sbjct: 134 YKTELCRPFEENGACKYGEKCQFAHGFHELR----------------------------- 164
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSK 191
++ YK C+ F+T CPYG C F+H+ + +
Sbjct: 165 ---------SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEER 201
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
+ V + +KT +C +E G C +G KC FAHG EL
Sbjct: 127 AQVNSTRYKTELCRPFEENGACKYGEKCQFAHGFHEL 163
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELRRPP 119
+KT+LC F G CPY C+F H+ EE R+ P
Sbjct: 172 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRQAP 205
>sp|Q9FG30|C3H52_ARATH Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis
thaliana GN=At5g06770 PE=2 SV=1
Length = 240
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFG 262
SN+KT+IC+++ G C +G++CHFAHG EL R G
Sbjct: 204 SNYKTKICDRYS-KGNCTYGDRCHFAHGESELRRSG 238
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 155 AVETQRSYKGRHCKKFYTEEGCPYGENCTFLH 186
++ T K + C KF++ GCP+G+NC FLH
Sbjct: 30 SISTGLGSKSKPCTKFFSTSGCPFGDNCHFLH 61
Score = 39.3 bits (90), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRR 117
+KTK+C ++ G C Y C+FAH ELRR
Sbjct: 206 YKTKICDRYSKGNCTYGDRCHFAHGESELRR 236
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 230 KTRICNKWELTGYCPFGNKCHFAH 253
K++ C K+ T CPFG+ CHF H
Sbjct: 38 KSKPCTKFFSTSGCPFGDNCHFLH 61
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 39/102 (38%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +G C Y C FAH + ELR+P
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQP--------------------------- 134
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHD 187
YK C KFY + CPYG C F+H+
Sbjct: 135 -----------SRHPKYKTELCHKFYLQGRCPYGSRCHFIHN 165
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YG C F H + S
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQPS-------------------------- 135
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
+ +KT +C+K+ L G CP+G++CHF H E
Sbjct: 136 ---RHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 38.9 bits (89), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
+KT +C + +G C +G KC FAHG+ EL +
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 133
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEE 114
+KT+LC KF G CPY + C+F H+ E
Sbjct: 140 YKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
>sp|Q8GVZ8|C3H48_ORYSJ Putative zinc finger CCCH domain-containing protein 48 OS=Oryza
sativa subsp. japonica GN=Os07g0139000 PE=4 SV=1
Length = 496
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 162 YKGRHCKKFYTE-EGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAA---AAAAGN 217
+K + C ++Y+ GCP G C + H E SL G G + AA G
Sbjct: 378 HKTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRLVVAVSSLADAGEGSSSSDSSFAALGGE 437
Query: 218 NIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
+ +KT++C + G C F C FAHG EL
Sbjct: 438 D---------KYKTKLCKTFTSGGLCLFAANCRFAHGEVEL 469
Score = 38.5 bits (88), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 81 AIGKMFFKTKLCCKF--RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNE 138
A G KTKLC ++ R CP C +AH ++LR +VA A
Sbjct: 372 AFGLEEHKTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRL-------VVAVSSLADAGEGS 424
Query: 139 IPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDE 188
S S+ A+ + YK + CK F + C + NC F H E
Sbjct: 425 S--------SSDSSFAALGGEDKYKTKLCKTFTSGGLCLFAANCRFAHGE 466
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 87 FKTKLCCKFRNG-TCPYITNCNFAHSIEELRRPPPNW 122
+KTKLC F +G C + NC FAH EL + P W
Sbjct: 440 YKTKLCKTFTSGGLCLFAANCRFAHGEVELGKKEPCW 476
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 39/102 (38%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +G C Y C FAH + ELR+ N P+
Sbjct: 104 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQ------------------ANRHPK---- 141
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHD 187
YK C KFY + CPYG C F+H+
Sbjct: 142 ----------------YKTELCHKFYLQGRCPYGSRCHFIHN 167
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YG C F H G G +
Sbjct: 104 YKTELCRTFSESGRCRYGAKCQFAH-----------------GLG-----------ELRQ 135
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
+N P +KT +C+K+ L G CP+G++CHF H E
Sbjct: 136 ANRHP-KYKTELCHKFYLQGRCPYGSRCHFIHNPSE 170
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
+KT +C + +G C +G KC FAHG+ EL +
Sbjct: 103 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 135
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEE 114
+KT+LC KF G CPY + C+F H+ E
Sbjct: 142 YKTELCHKFYLQGRCPYGSRCHFIHNPSE 170
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ + C YG C F H GPG +
Sbjct: 97 YKTELCRTYSESGRCRYGAKCQFAH--------------GPG--------------ELRQ 128
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
+N P +KT +C+K+ L G CP+G++CHF H E
Sbjct: 129 ANRHP-KYKTELCHKFYLQGRCPYGSRCHFIHNPTE 163
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
+KT +C + +G C +G KC FAHG EL +
Sbjct: 96 RYKTELCRTYSESGRCRYGAKCQFAHGPGELRQ 128
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHS-IEELRRP 118
+KT+LC KF G CPY + C+F H+ E+L P
Sbjct: 135 YKTELCHKFYLQGRCPYGSRCHFIHNPTEDLALP 168
>sp|Q9C7C3|C3H36_ARATH Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis
thaliana GN=At3g12130 PE=2 SV=1
Length = 248
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFG 262
SN+KT+IC ++ G C FG++CHFAHG EL + G
Sbjct: 212 SNFKTKICERFS-KGNCTFGDRCHFAHGEAELRKSG 246
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 163 KGRHCKKFYTEEGCPYGENCTFLH 186
K + C KF++ GCP+GENC FLH
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLH 61
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRR 117
FKTK+C +F G C + C+FAH ELR+
Sbjct: 214 FKTKICERFSKGNCTFGDRCHFAHGEAELRK 244
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 230 KTRICNKWELTGYCPFGNKCHFAH 253
K++ C K+ T CPFG CHF H
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLH 61
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YGE C F H G +
Sbjct: 102 YKTELCRPFEESGACKYGEKCQFAH-----------------------------GFHELR 132
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CH H +E
Sbjct: 133 SLTRHPKYKTELCRTFHTIGFCPYGPRCHLIHNAEE 168
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
+ V + +KT +C +E +G C +G KC FAHG EL
Sbjct: 95 AQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHEL 131
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 39/108 (36%)
Query: 87 FKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +G C Y C FAH ELR
Sbjct: 102 YKTELCRPFEESGACKYGEKCQFAHGFHELR----------------------------- 132
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNR 193
++ YK C+ F+T CPYG C +H+ + + +
Sbjct: 133 ---------SLTRHPKYKTELCRTFHTIGFCPYGPRCHLIHNAEERRQ 171
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 39/102 (38%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +G C Y C FAH + ELR+
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQ---------------------------- 133
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHD 187
YK C KFY + CPYG C F+H+
Sbjct: 134 ----------ASRHPKYKTELCHKFYLQGRCPYGSRCHFIHN 165
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YG C F H + S
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQAS-------------------------- 135
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
+ +KT +C+K+ L G CP+G++CHF H E
Sbjct: 136 ---RHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 38.5 bits (88), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
+KT +C + +G C +G KC FAHG+ EL +
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 133
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEE 114
+KT+LC KF G CPY + C+F H+ E
Sbjct: 140 YKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YGE C F H G +
Sbjct: 154 YKTELCRPFEESGTCKYGEKCQFAH-----------------------------GFHELR 184
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CHF H E
Sbjct: 185 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 220
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 52/157 (33%), Gaps = 48/157 (30%)
Query: 87 FKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +GTC Y C FAH ELR
Sbjct: 154 YKTELCRPFEESGTCKYGEKCQFAHGFHELR----------------------------- 184
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGY 205
++ YK C+ F+T CPYG C F+H+ + P
Sbjct: 185 ---------SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERR---------PAPS 226
Query: 206 GGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGY 242
GG A G + P + ++ + +G+
Sbjct: 227 GGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGF 263
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 224 VKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
+ + +KT +C +E +G C +G KC FAHG EL
Sbjct: 149 INSTRYKTELCRPFEESGTCKYGEKCQFAHGFHEL 183
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 39/102 (38%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC + +G C Y C FAH + ELR+ N P+
Sbjct: 96 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQ------------------ANRHPK---- 133
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHD 187
YK C KFY + CPYG C F+H+
Sbjct: 134 ----------------YKTELCHKFYLQGRCPYGSRCHFIHN 159
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ + C YG C F H G G +
Sbjct: 96 YKTELCRTYSESGRCRYGAKCQFAH-----------------GLG-----------ELRQ 127
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
+N P +KT +C+K+ L G CP+G++CHF H E
Sbjct: 128 ANRHP-KYKTELCHKFYLQGRCPYGSRCHFIHNPTE 162
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
+KT +C + +G C +G KC FAHG+ EL +
Sbjct: 95 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ 127
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEE 114
+KT+LC KF G CPY + C+F H+ E
Sbjct: 134 YKTELCHKFYLQGRCPYGSRCHFIHNPTE 162
>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans
GN=pie-1 PE=1 SV=1
Length = 335
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 30/151 (19%)
Query: 141 REEFQIPSIVSTNFAVETQR---------SYKGRHCKKFYTEEGCPYGENCTFLHDEQS- 190
RE +I + + A T+R YK R C F E CPY +NCT+ H +
Sbjct: 69 REALKITPLAQIDEAPATKRHSSAKDKHTEYKTRLCDAFRREGYCPYNDNCTYAHGQDEL 128
Query: 191 ---KNRESVAISLGPGGYGGGGAAAAAAGNNIGVS----------NVKPSN-----WKTR 232
+ R+ P + I S N +PSN + +
Sbjct: 129 RVPRRRQEYYSRDPPRERRDSRSRRDDVDTTINRSSSSASKHHDENRRPSNNHGSSNRRQ 188
Query: 233 ICNKWELTGYCPFGNKCHFAHGIQELHRFGG 263
IC+ +E G C +G +C F H ++++ F
Sbjct: 189 ICHNFE-RGNCRYGPRCRFIH-VEQMQHFNA 217
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELRRP----------PPNWQEIVAAHEEERAS 135
+KT+LC FR G CPY NC +AH +ELR P PP + + ++ +
Sbjct: 99 YKTRLCDAFRREGYCPYNDNCTYAHGQDELRVPRRRQEYYSRDPPRERRDSRSRRDDVDT 158
Query: 136 TNEIPREEFQIPSIVSTNFAVETQR-------SYKGRHCKKFYTEEG-CPYGENCTFLHD 187
T I R S ++ E +R S + + C F E G C YG C F+H
Sbjct: 159 T--INRS-----SSSASKHHDENRRPSNNHGSSNRRQICHNF--ERGNCRYGPRCRFIHV 209
Query: 188 EQSKNRESVAISLGP 202
EQ ++ + A P
Sbjct: 210 EQMQHFNANATVYAP 224
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
S + + +KT +C +E +G C +G KC FAHG EL
Sbjct: 120 SQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHEL 156
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YGE C F H
Sbjct: 127 YKTELCRPFEESGTCKYGEKCQFAHGFHELR----------------------------- 157
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CHF H E
Sbjct: 158 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 193
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 39/106 (36%)
Query: 87 FKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +GTC Y C FAH ELR
Sbjct: 127 YKTELCRPFEESGTCKYGEKCQFAHGFHELR----------------------------- 157
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSK 191
++ YK C+ F+T CPYG C F+H+ +
Sbjct: 158 ---------SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADER 194
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 31/97 (31%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YGE C F H +
Sbjct: 136 YKTELCRPFEEAGECKYGEKCQFAHGSHE------------------------------L 165
Query: 222 SNV-KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
NV + +KT C + G+CP+G +CHF H E
Sbjct: 166 RNVHRHPKYKTEYCRTFHSVGFCPYGPRCHFVHNADE 202
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
S +KT +C +E G C +G KC FAHG EL
Sbjct: 134 SRYKTELCRPFEEAGECKYGEKCQFAHGSHEL 165
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 35/102 (34%), Gaps = 39/102 (38%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F G C Y C FAH ELR
Sbjct: 136 YKTELCRPFEEAGECKYGEKCQFAHGSHELRN---------------------------- 167
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHD 187
V YK +C+ F++ CPYG C F+H+
Sbjct: 168 ----------VHRHPKYKTEYCRTFHSVGFCPYGPRCHFVHN 199
>sp|Q6YYC0|C3H55_ORYSJ Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa
subsp. japonica GN=Os08g0135800 PE=2 SV=1
Length = 958
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
Query: 65 NKKSRNGSQDVNSKSKAIGKMFFKTKL-CCKFRNGTCPYITNCNFAHSIEELRRPPPNWQ 123
N+ R G D + ++ + +++ + C F G C NC + H + P W+
Sbjct: 292 NRPPRGGHYDEGTWERSEPRREYRSTMPCHDFVKGRCSRGANCRYVH---DDSTPHGGWR 348
Query: 124 EIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCT 183
+ V N I R S +++ T+ ++ KF+ GC G+NC
Sbjct: 349 DEV--------RDNAIGR------SGPDSSYGNRTEHRRTNKNPCKFFANGGCRRGQNCP 394
Query: 184 FLHDEQSKNRESVAISLGPGGYGG 207
+LH+E S+++ + PG GG
Sbjct: 395 YLHEEASQSQMGLGAPDEPGYTGG 418
>sp|Q4WRX4|DUS3_ASPFU tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=dus3 PE=3 SV=1
Length = 726
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 47/152 (30%)
Query: 171 YTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWK 230
++ + C +GE C F HD ++ +E L +GG
Sbjct: 136 FSPKECKFGEKCRFEHDVRTYLKEHKREDLTT--FGG----------------------- 170
Query: 231 TRICNKWELTGYCPFGNKCHF----------AHGIQELHRFGGGLVESENNDSSAAP--- 277
IC W+ G CP+G KC + G +EL L+E E A P
Sbjct: 171 --ICPIWDAKGRCPYGFKCRLVGSHMTERDTSDGRKELI-----LLEDEERKKKARPVVP 223
Query: 278 --SDSKLVGVPSKTPVDTVVASVTSVPHADVY 307
S+ LV + S V T+ P +DVY
Sbjct: 224 YASEDGLVNIVSNEDKIAVARRKTTTPRSDVY 255
>sp|A1D1U0|DUS3_NEOFI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=dus3 PE=3 SV=1
Length = 726
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 51/147 (34%), Gaps = 37/147 (25%)
Query: 171 YTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWK 230
++ + C +GE C F HD ++ +E L +GG
Sbjct: 136 FSPKECKFGEKCRFEHDVRTYLKEHKREDLTT--FGG----------------------- 170
Query: 231 TRICNKWELTGYCPFGNKCHFAHGIQELHRFGGG-----LVESENNDSSAAP-----SDS 280
IC W+ G CP+G KC G L+E E +A P S+
Sbjct: 171 --ICPIWDAKGRCPYGFKCRLVRSHMTERDTSDGRKELILLEDEERKKTARPVVPYASED 228
Query: 281 KLVGVPSKTPVDTVVASVTSVPHADVY 307
LV + S V T+ P +D Y
Sbjct: 229 GLVNIVSNEDKIAVARRKTTTPRSDAY 255
>sp|A8NZY7|DUS3_COPC7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=DUS3 PE=3 SV=1
Length = 676
Score = 38.1 bits (87), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 37 EDDYPDDPPSISNSNCQSQTRSNSEQP-------PNKKSRNGSQDVNSKSKAIGKMFFKT 89
+DD + SI S + + S + QP KK+R G+ +K + GK+ +
Sbjct: 26 DDDAAEGTTSIVKSAGRGEDDSGNGQPSRRALAKAQKKARQGA----NKGRRFGKVRDEV 81
Query: 90 KLCCKFRNGT-CPYITNCNFAHSIEELRRPPPN 121
+LC K NG C + T+C F H I E + P
Sbjct: 82 ELCWKVANGAICDFGTSCRFTHDIAEYIKEKPQ 114
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRF 261
S +KT +C + G CP G C FAH +EL +F
Sbjct: 412 SKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKF 446
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 69/188 (36%), Gaps = 31/188 (16%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKN-----------RESVAISLGPGGYGGGGA 210
YK C+ GCP G +CTF H ++ R ++ SLG G +
Sbjct: 414 YKTYMCRDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPS 473
Query: 211 AAAAAGNN-IGVSNVKPSNWKTRICNKWE-LTGYCPFGNKCHFAHGIQ--ELHRFGGG-- 264
A + + + +SN KP I + +T P G F ++ +L
Sbjct: 474 APILSDESAVDLSNRKPPALPNGIASSGSTVTQLIPRGTDPSFDSSLKPVKLDHLSSSAP 533
Query: 265 -----LVESENNDSSAAPSDSKLVGVPSKTPVDT----VVASVTSVPHADVYHMGVPSQR 315
L+ES SA P + VP + P D V + VP + P+Q+
Sbjct: 534 GSPPDLLESAPKSISALPVNPH--PVPPRGPTDLPPMPVTKPIQMVPRGSQLY---PAQQ 588
Query: 316 SSIVVQRP 323
+ + Q P
Sbjct: 589 ADVYYQDP 596
>sp|Q5TC82|RC3H1_HUMAN Probable E3 ubiquitin-protein ligase Roquin OS=Homo sapiens
GN=RC3H1 PE=1 SV=1
Length = 1133
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRF 261
S +KT +C + G CP G C FAH +EL +F
Sbjct: 412 SKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKF 446
>sp|P0C090|RC3H2_MOUSE RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Mus musculus GN=Rc3h2 PE=2 SV=1
Length = 1187
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELRR 117
+KT +C R G CP TNC FAHS EEL +
Sbjct: 411 YKTSMCRDLRQQGGCPRGTNCTFAHSQEELEK 442
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 54/151 (35%), Gaps = 16/151 (10%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQS-------KNRESVAISLGP--GGYGGGGAAA 212
YK C+ + GCP G NCTF H ++ + S + P G
Sbjct: 411 YKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKYRLRNKKMSATVRTFPLLNKVGVNSTVT 470
Query: 213 AAAGNNIGVSNVKPSNWKTR-----ICN-KWELTGYCPFGNKCHFAHGIQELHRFGGGLV 266
AGN I V + K I N + ++ P G ++ + + G
Sbjct: 471 TTAGNVISVIGSTETTGKIVASTNGISNTESSVSQLIPRGTDSA-VRTLETVKKVGKVGT 529
Query: 267 ESENNDSSAAPSDSKLVGVPSKTPVDTVVAS 297
++N SA +G P KTPV A+
Sbjct: 530 NAQNAGPSAESVSENKIGSPPKTPVSNAAAT 560
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRF 261
S +KT +C G CP G C FAH +EL ++
Sbjct: 409 SKYKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKY 443
>sp|Q9HBD1|RC3H2_HUMAN RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Homo sapiens GN=RC3H2 PE=1 SV=2
Length = 1191
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELRR 117
+KT +C R G CP TNC FAHS EEL +
Sbjct: 411 YKTSMCRDLRQQGGCPRGTNCTFAHSQEELEK 442
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRF 261
S +KT +C G CP G C FAH +EL ++
Sbjct: 409 SKYKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKY 443
Score = 35.0 bits (79), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
YK C+ + GCP G NCTF H ++
Sbjct: 411 YKTSMCRDLRQQGGCPRGTNCTFAHSQE 438
>sp|Q93XW7|C3H40_ARATH Zinc finger CCCH domain-containing protein 40 OS=Arabidopsis
thaliana GN=At3g21810 PE=1 SV=1
Length = 437
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 83 GKMFFKTKLCCKF-RNGTCPYITNCNFAHSIEELRRP 118
G +KTKLC F + G C NC FAH ELRRP
Sbjct: 3 GSSMYKTKLCILFNKTGDCSR-PNCTFAHGNAELRRP 38
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 225 KPSNWKTRICNKWELTGY--CPFGNKCHFAHGIQEL 258
+P N+KTR+C +G C G +C FAHG++EL
Sbjct: 267 QPPNYKTRLC-MMHASGIKPCDMGARCKFAHGLKEL 301
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 87 FKTKLCCKF-RNGT--CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPRE 142
+KTKLC F R GT CPY C F H ++ + P +Q + +H+++ + IP +
Sbjct: 315 YKTKLCKNFARGGTGFCPYGLRCEFVHPTDKEFQNIPPYQRM--SHDDQDYDQDVIPED 371
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 229 WKTRICNKWEL--TGYCPFGNKCHFAH 253
+KT++C + TG+CP+G +C F H
Sbjct: 315 YKTKLCKNFARGGTGFCPYGLRCEFVH 341
>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
thaliana GN=At5g63260 PE=2 SV=2
Length = 435
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 52/163 (31%)
Query: 93 CKF--RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIV 150
C F R G+C Y ++C F H + +++ E R E+ + P ++
Sbjct: 107 CSFYMRTGSCKYGSSCKFNHPVR---------RKLQIGRERVRERD-----EDVENPKLM 152
Query: 151 STNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGA 210
CK ++ GC YGE+C F H ++ +
Sbjct: 153 ---------------ECKYYFRTGGCKYGESCRFSHMKEHNS-----------------P 180
Query: 211 AAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAH 253
A+ N +G+ ++P + C + G C FG+ C F H
Sbjct: 181 ASVPELNFLGLP-IRPGE---KECPFYMRNGSCKFGSDCKFNH 219
>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis
thaliana GN=At3g06410 PE=2 SV=2
Length = 462
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 19/89 (21%)
Query: 167 CKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKP 226
C+ F C +G +C + H Q GGGG+ A + + +G P
Sbjct: 106 CQHFMRTGTCKFGASCKYHHPRQG---------------GGGGSVAPVSLSYLGY----P 146
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGI 255
+ C+ + TG C FG C F H +
Sbjct: 147 LRPGEKECSYYLRTGQCKFGLTCRFNHPV 175
>sp|Q5AVC5|CWC24_EMENI Pre-mRNA-splicing factor cwc24 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc24
PE=3 SV=1
Length = 332
Score = 36.2 bits (82), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 221 VSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFG 262
V V ++ +C ++LTGYC FG+ C F+H ++E ++ G
Sbjct: 155 VRTVTFMDYAPDVCKDYKLTGYCGFGDSCKFSH-MREDYKQG 195
>sp|Q6H7U2|C3H13_ORYSJ Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa
subsp. japonica GN=Os02g0161200 PE=2 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRRPP 119
+KTKLC ++ G C T C+FAH ++RRPP
Sbjct: 11 YKTKLCALWQRGNCNRDT-CSFAHGHGDIRRPP 42
>sp|Q5VR07|C3H1_ORYSJ Zinc finger CCCH domain-containing protein 1 OS=Oryza sativa subsp.
japonica GN=Os01g0174600 PE=2 SV=1
Length = 279
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 84 KMFFKTKLCCKF-RNGTCPYITNCNFAHSIEELR 116
K+F+KT++C F +G C + C FAH EELR
Sbjct: 54 KLFYKTRVCETFVTSGRCMFEDGCTFAHGDEELR 87
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 229 WKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
+KTR+C + +G C F + C FAHG +EL
Sbjct: 57 YKTRVCETFVTSGRCMFEDGCTFAHGDEEL 86
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 221 VSNVKPSNWKTRICNKWEL-TGYCPFGNKCHFAHGIQEL 258
V + P N+KTR+C C G +C FAHG++EL
Sbjct: 266 VDSQLPHNFKTRLCMTHAAGINPCALGARCKFAHGLKEL 304
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 37/104 (35%), Gaps = 37/104 (35%)
Query: 87 FKTKLCCKFRNGT--CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEF 144
FKT+LC G C C FAH ++ELR AS
Sbjct: 274 FKTRLCMTHAAGINPCALGARCKFAHGLKELR-----------------AS--------- 307
Query: 145 QIPSIVSTNFAVETQRSYKGRHCKKFYTEEG--CPYGENCTFLH 186
IP+ N YK + CK F CPYG C F+H
Sbjct: 308 DIPTRYPNN-------KYKTKLCKNFARGGSGVCPYGLRCEFVH 344
>sp|A1CNY3|DUS3_ASPCL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=dus3 PE=3 SV=1
Length = 728
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 27/82 (32%)
Query: 171 YTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWK 230
++ + C +G+ C F HD ++ +E L +GG
Sbjct: 140 FSPKECKFGDRCRFEHDVRTYLKEHKRADLTT--FGG----------------------- 174
Query: 231 TRICNKWELTGYCPFGNKCHFA 252
IC WE G CP+G KC F
Sbjct: 175 --ICPLWEAKGRCPYGYKCRFV 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,325,324
Number of Sequences: 539616
Number of extensions: 6726902
Number of successful extensions: 21056
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 20418
Number of HSP's gapped (non-prelim): 618
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)