Query 018874
Match_columns 349
No_of_seqs 263 out of 1581
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1595 CCCH-type Zn-finger pr 99.6 8E-15 1.7E-19 148.1 8.4 102 85-263 197-299 (528)
2 KOG1677 CCCH-type Zn-finger pr 99.5 1.1E-14 2.4E-19 142.1 6.7 119 90-261 87-207 (332)
3 KOG1677 CCCH-type Zn-finger pr 99.2 4.6E-12 9.9E-17 123.8 4.3 82 79-192 122-205 (332)
4 COG5063 CTH1 CCCH-type Zn-fing 99.1 5.6E-11 1.2E-15 113.0 4.8 116 81-261 220-344 (351)
5 KOG1040 Polyadenylation factor 99.0 4.8E-10 1E-14 109.4 5.3 113 85-260 73-187 (325)
6 COG5063 CTH1 CCCH-type Zn-fing 98.8 4.5E-09 9.9E-14 100.2 4.9 72 160-260 224-303 (351)
7 KOG1595 CCCH-type Zn-finger pr 98.8 7.7E-09 1.7E-13 105.2 5.6 149 76-258 104-262 (528)
8 PF00642 zf-CCCH: Zinc finger 98.5 2.6E-08 5.7E-13 62.6 0.5 27 229-255 1-27 (27)
9 PF00642 zf-CCCH: Zinc finger 98.4 7.2E-08 1.6E-12 60.7 0.4 25 87-111 1-26 (27)
10 COG5084 YTH1 Cleavage and poly 98.3 1.9E-06 4.1E-11 82.7 7.1 90 86-258 101-192 (285)
11 KOG1492 C3H1-type Zn-finger pr 98.1 2.7E-06 5.8E-11 78.7 5.1 23 166-190 263-285 (377)
12 KOG1492 C3H1-type Zn-finger pr 98.0 2E-06 4.3E-11 79.5 2.0 104 90-256 207-313 (377)
13 smart00356 ZnF_C3H1 zinc finge 98.0 2.9E-06 6.3E-11 52.6 2.1 25 87-111 2-26 (27)
14 KOG1040 Polyadenylation factor 98.0 5.5E-06 1.2E-10 81.2 3.7 110 90-258 46-160 (325)
15 smart00356 ZnF_C3H1 zinc finge 97.9 8.2E-06 1.8E-10 50.5 2.0 26 229-255 2-27 (27)
16 KOG2494 C3H1-type Zn-finger pr 97.8 1E-05 2.2E-10 78.4 1.8 60 88-191 36-96 (331)
17 KOG2333 Uncharacterized conser 97.6 1.8E-05 3.9E-10 80.3 0.8 60 88-188 75-138 (614)
18 KOG4791 Uncharacterized conser 97.5 6.3E-05 1.4E-09 76.0 3.6 86 90-261 4-90 (667)
19 KOG2494 C3H1-type Zn-finger pr 97.5 4.4E-05 9.6E-10 74.0 1.9 60 164-259 37-97 (331)
20 KOG2333 Uncharacterized conser 97.3 9.3E-05 2E-09 75.3 2.0 61 163-254 75-137 (614)
21 COG5252 Uncharacterized conser 96.9 0.00024 5.1E-09 66.2 -0.0 31 87-117 83-113 (299)
22 KOG1763 Uncharacterized conser 96.9 0.00023 4.9E-09 68.2 -0.4 29 162-191 90-118 (343)
23 KOG2185 Predicted RNA-processi 96.6 0.0011 2.4E-08 66.1 2.2 40 223-263 132-175 (486)
24 COG5084 YTH1 Cleavage and poly 96.6 0.007 1.5E-07 58.5 7.3 86 89-258 134-236 (285)
25 KOG4791 Uncharacterized conser 96.1 0.005 1.1E-07 62.6 3.7 108 90-256 33-142 (667)
26 KOG2185 Predicted RNA-processi 95.9 0.0028 6.1E-08 63.3 1.2 39 88-126 139-182 (486)
27 PF14608 zf-CCCH_2: Zinc finge 95.6 0.0076 1.6E-07 34.8 1.6 19 233-254 1-19 (19)
28 PF14608 zf-CCCH_2: Zinc finge 95.5 0.0086 1.9E-07 34.5 1.7 19 91-111 1-19 (19)
29 KOG1763 Uncharacterized conser 94.9 0.0065 1.4E-07 58.5 -0.3 31 87-117 90-120 (343)
30 COG5252 Uncharacterized conser 94.8 0.0073 1.6E-07 56.5 -0.3 84 162-257 83-177 (299)
31 COG5152 Uncharacterized conser 94.5 0.013 2.8E-07 53.6 0.6 30 229-258 139-168 (259)
32 COG5152 Uncharacterized conser 93.9 0.022 4.8E-07 52.1 0.9 35 83-117 135-170 (259)
33 KOG1039 Predicted E3 ubiquitin 92.7 0.088 1.9E-06 52.3 3.0 25 165-190 9-33 (344)
34 KOG1813 Predicted E3 ubiquitin 87.9 0.16 3.5E-06 49.2 0.1 30 229-258 184-213 (313)
35 PF10650 zf-C3H1: Putative zin 84.2 0.61 1.3E-05 28.3 1.2 20 90-110 1-21 (23)
36 KOG1039 Predicted E3 ubiquitin 83.9 0.4 8.6E-06 47.8 0.6 24 232-256 9-32 (344)
37 KOG1813 Predicted E3 ubiquitin 82.6 0.42 9E-06 46.4 0.1 33 159-191 181-213 (313)
38 KOG3702 Nuclear polyadenylated 78.2 2.5 5.5E-05 45.1 4.1 22 231-256 625-646 (681)
39 KOG3702 Nuclear polyadenylated 75.6 3.9 8.4E-05 43.7 4.7 16 241-256 651-666 (681)
40 KOG2202 U2 snRNP splicing fact 74.4 1.4 3E-05 42.0 0.9 30 83-112 146-175 (260)
41 KOG0153 Predicted RNA-binding 67.3 3.4 7.3E-05 41.1 1.9 24 89-112 161-184 (377)
42 KOG2202 U2 snRNP splicing fact 55.3 5.6 0.00012 38.0 1.0 27 228-255 149-175 (260)
43 TIGR02996 rpt_mate_G_obs repea 50.3 3.3 7.2E-05 28.8 -1.0 10 338-347 19-28 (42)
44 KOG0153 Predicted RNA-binding 40.8 12 0.00026 37.3 0.8 23 233-256 163-185 (377)
45 PF05129 Elf1: Transcription e 38.8 4.2 9E-05 32.2 -2.2 7 340-346 69-75 (81)
46 KOG2135 Proteins containing th 23.6 28 0.00062 36.1 0.2 28 229-256 210-237 (526)
47 KOG3214 Uncharacterized Zn rib 22.2 21 0.00045 29.5 -0.9 7 340-346 70-76 (109)
No 1
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.55 E-value=8e-15 Score=148.08 Aligned_cols=102 Identities=32% Similarity=0.688 Sum_probs=85.9
Q ss_pred cccccccccccccCCCCCCCCCCCCCCccc-cCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccc
Q 018874 85 MFFKTKLCCKFRNGTCPYITNCNFAHSIEE-LRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYK 163 (349)
Q Consensus 85 ~~yKTklC~~f~~G~C~~G~~C~FaH~~ee-lR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yK 163 (349)
.-|||+.|..- .|..+..|.|+|.-+. -|+.| |+. .|.
T Consensus 197 y~fKir~C~R~---~shDwteCPf~HpgEkARRRDP---------------------Rky-----------------hYs 235 (528)
T KOG1595|consen 197 YSFKIRRCSRP---RSHDWTECPFAHPGEKARRRDP---------------------RKY-----------------HYS 235 (528)
T ss_pred EeeeecccCCc---cCCCcccCCccCCCcccccCCc---------------------ccc-----------------ccc
Confidence 34899999984 9999999999995544 44433 322 378
Q ss_pred cccCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccccccC
Q 018874 164 GRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYC 243 (349)
Q Consensus 164 t~~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~C 243 (349)
.++|+.|.+ |.|+.||.|.|+|+..| .++||..|||++|+. .|+|
T Consensus 236 ~tpCPefrk-G~C~rGD~CEyaHgvfE-------------------------------cwLHPa~YRT~~CkD---g~~C 280 (528)
T KOG1595|consen 236 STPCPEFRK-GSCERGDSCEYAHGVFE-------------------------------CWLHPARYRTRKCKD---GGYC 280 (528)
T ss_pred CccCccccc-CCCCCCCccccccceeh-------------------------------hhcCHHHhccccccC---CCCC
Confidence 889988765 99999999999999998 679999999999985 5899
Q ss_pred CCCCCCCCCCCccccccCCC
Q 018874 244 PFGNKCHFAHGIQELHRFGG 263 (349)
Q Consensus 244 ~~G~~C~FaHg~~ELr~~~~ 263 (349)
++ .-|.|||..+|||....
T Consensus 281 ~R-rvCfFAH~~eqLR~l~~ 299 (528)
T KOG1595|consen 281 PR-RVCFFAHSPEQLRPLPP 299 (528)
T ss_pred cc-ceEeeecChHHhcccCC
Confidence 99 99999999999998764
No 2
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.52 E-value=1.1e-14 Score=142.12 Aligned_cols=119 Identities=30% Similarity=0.643 Sum_probs=92.2
Q ss_pred ccccccc-cCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccccCc
Q 018874 90 KLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCK 168 (349)
Q Consensus 90 klC~~f~-~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~C~ 168 (349)
..|.++. .+.|.++..|+|.|...+++..+.. + .........+|+.+|.
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~-------------------~-----------~~~~~~p~~~kt~lc~ 136 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVR-------------------R-----------SRGERKPERYKTPLCR 136 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCcc-------------------c-----------cccccCcccccCCcce
Confidence 7899998 7999999999999998565543210 0 0011123468999999
Q ss_pred cccccCCCCC-CCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccccccCCCCC
Q 018874 169 KFYTEEGCPY-GENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGN 247 (349)
Q Consensus 169 ~f~~~G~C~~-G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~C~~G~ 247 (349)
.|...|.|+| |++|+|+|...+++... .......+..|||++|.+|+++|+|+||.
T Consensus 137 ~~~~~g~c~y~ge~crfah~~~e~r~~~-----------------------~~~~~~~~~~~kt~lC~~f~~tG~C~yG~ 193 (332)
T KOG1677|consen 137 SFRKSGTCKYRGEQCRFAHGLEELRLPS-----------------------SENQVGNPPKYKTKLCPKFQKTGLCKYGS 193 (332)
T ss_pred eeecCccccccCchhhhcCCcccccccc-----------------------cchhhcCCCCCCCcCCCccccCCCCCCCC
Confidence 9999999999 99999999998865321 00122456789999999999999999999
Q ss_pred CCCCCCCccccccC
Q 018874 248 KCHFAHGIQELHRF 261 (349)
Q Consensus 248 ~C~FaHg~~ELr~~ 261 (349)
+|+|+|+..+++..
T Consensus 194 rC~F~H~~~~~~~~ 207 (332)
T KOG1677|consen 194 RCRFIHGEPEDRAS 207 (332)
T ss_pred cCeecCCCcccccc
Confidence 99999999887653
No 3
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.24 E-value=4.6e-12 Score=123.78 Aligned_cols=82 Identities=39% Similarity=0.755 Sum_probs=66.3
Q ss_pred ccccCccccccccccccc-cCCCCC-CCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccc
Q 018874 79 SKAIGKMFFKTKLCCKFR-NGTCPY-ITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAV 156 (349)
Q Consensus 79 ~~~~~~~~yKTklC~~f~-~G~C~~-G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~ 156 (349)
........|||.+|..|. .|.|+| |+.|+|+|+.+++|.+.. . . ..
T Consensus 122 ~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~--~--~----------------------------~~ 169 (332)
T KOG1677|consen 122 RGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSS--E--N----------------------------QV 169 (332)
T ss_pred ccccCcccccCCcceeeecCccccccCchhhhcCCccccccccc--c--h----------------------------hh
Confidence 344556679999999999 799999 999999999999996530 0 0 00
Q ss_pred ccccccccccCccccccCCCCCCCCCCCCCCccccc
Q 018874 157 ETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKN 192 (349)
Q Consensus 157 ~~~~~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~ 192 (349)
....+|||++|.+|..+|.|+||.+|+|+|...+.+
T Consensus 170 ~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 170 GNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred cCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 113579999999999999999999999999988753
No 4
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.11 E-value=5.6e-11 Score=113.02 Aligned_cols=116 Identities=27% Similarity=0.536 Sum_probs=92.8
Q ss_pred ccCcccccc--ccccccc-cCCCCC---CCCCCCC---CCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccc
Q 018874 81 AIGKMFFKT--KLCCKFR-NGTCPY---ITNCNFA---HSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVS 151 (349)
Q Consensus 81 ~~~~~~yKT--klC~~f~-~G~C~~---G~~C~Fa---H~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s 151 (349)
..++..||| .||.-|. .|+|++ |+.|.|+ |+..++...-
T Consensus 220 e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~-------------------------------- 267 (351)
T COG5063 220 EQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKK-------------------------------- 267 (351)
T ss_pred hccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccccc--------------------------------
Confidence 355677899 9999998 799999 9999999 9987765421
Q ss_pred cccccccccccccccCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccc
Q 018874 152 TNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKT 231 (349)
Q Consensus 152 ~~~~~~~~~~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt 231 (349)
....|+|++|..|...|.|+||.+|.|.|+.+++...-. ...-.|+.
T Consensus 268 ------k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~---------------------------~~~~~y~~ 314 (351)
T COG5063 268 ------KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYE---------------------------EASLGYLD 314 (351)
T ss_pred ------cccccccCCccchhhcccCccccccccccCChhhccccc---------------------------cccccccc
Confidence 023589999999999999999999999999988643211 11124666
Q ss_pred cccccccccccCCCCCCCCCCCCccccccC
Q 018874 232 RICNKWELTGYCPFGNKCHFAHGIQELHRF 261 (349)
Q Consensus 232 ~lC~~f~~~G~C~~G~~C~FaHg~~ELr~~ 261 (349)
..|+-+++.|.|++|.+|.|.|...-|...
T Consensus 315 ~~crt~~~~g~~p~g~~~c~~~dkkn~~~s 344 (351)
T COG5063 315 GPCRTRAKGGAFPSGGAVCKSFDKKNLDFS 344 (351)
T ss_pred cccccccccCccCCCCchhhccccchhhhh
Confidence 789999999999999999999998766543
No 5
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=98.98 E-value=4.8e-10 Score=109.36 Aligned_cols=113 Identities=24% Similarity=0.495 Sum_probs=78.6
Q ss_pred cccccccccccccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccccccccccc
Q 018874 85 MFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG 164 (349)
Q Consensus 85 ~~yKTklC~~f~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt 164 (349)
..+++.+|++|+.|.|+.|+.|.|+|.. +|. ++
T Consensus 73 ~~~~~~vcK~~l~glC~kgD~C~Flhe~-~~~----------------------------------------------k~ 105 (325)
T KOG1040|consen 73 DSRGKVVCKHWLRGLCKKGDQCEFLHEY-DLT----------------------------------------------KM 105 (325)
T ss_pred ccCCceeehhhhhhhhhccCcCcchhhh-hhc----------------------------------------------cc
Confidence 3678899999999999999999999977 432 23
Q ss_pred ccCccccccCCCCCCCCCCCCCCccccc-cccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccccccC
Q 018874 165 RHCKKFYTEEGCPYGENCTFLHDEQSKN-RESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYC 243 (349)
Q Consensus 165 ~~C~~f~~~G~C~~G~~C~f~H~~~e~~-res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~C 243 (349)
..|.+|+..|.|..+..|.|.|...+-. .+...+.. +--..+....-...+..+|+.|. .|.|
T Consensus 106 rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~---------------g~c~~g~~c~~~h~~~~~c~~y~-~gfC 169 (325)
T KOG1040|consen 106 RECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKE---------------GFCRGGPSCKKRHERKVLCPPYN-AGFC 169 (325)
T ss_pred ccccccccccccccccCCcccCCChhhhhhccchhhh---------------ccCCCcchhhhhhhcccCCCchh-hhhc
Confidence 3677888889999999999999884211 11000100 00011122222333447899998 8999
Q ss_pred CCCCC-CCCCCCcccccc
Q 018874 244 PFGNK-CHFAHGIQELHR 260 (349)
Q Consensus 244 ~~G~~-C~FaHg~~ELr~ 260 (349)
+.|.. |-+.|+...+..
T Consensus 170 ~~g~q~c~~~hp~~~~~~ 187 (325)
T KOG1040|consen 170 PKGPQRCDMLHPEFQQPP 187 (325)
T ss_pred cCCCCcccccCCCCCCCh
Confidence 99998 999999877655
No 6
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.80 E-value=4.5e-09 Score=100.16 Aligned_cols=72 Identities=36% Similarity=0.831 Sum_probs=60.7
Q ss_pred ccccc--ccCccccccCCCCC---CCCCCCC---CCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccc
Q 018874 160 RSYKG--RHCKKFYTEEGCPY---GENCTFL---HDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKT 231 (349)
Q Consensus 160 ~~yKt--~~C~~f~~~G~C~~---G~~C~f~---H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt 231 (349)
..|++ .+|..|...|.|++ |+.|.|+ |+..++.. +..-..|+|
T Consensus 224 ~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~-----------------------------k~k~~~frT 274 (351)
T COG5063 224 PLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKS-----------------------------KKKKQNFRT 274 (351)
T ss_pred hhhcCCHHHhhccCcCCCCccccccccccccccccccccccc-----------------------------ccccccccc
Confidence 46788 89999999999999 9999999 98766421 123347899
Q ss_pred cccccccccccCCCCCCCCCCCCcccccc
Q 018874 232 RICNKWELTGYCPFGNKCHFAHGIQELHR 260 (349)
Q Consensus 232 ~lC~~f~~~G~C~~G~~C~FaHg~~ELr~ 260 (349)
+.|..|++.|+|+||.+|.|+||..++..
T Consensus 275 ePcinwe~sGyc~yg~Rc~F~hgd~~~ie 303 (351)
T COG5063 275 EPCINWEKSGYCPYGLRCCFKHGDDSDIE 303 (351)
T ss_pred CCccchhhcccCccccccccccCChhhcc
Confidence 99999999999999999999999887654
No 7
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.77 E-value=7.7e-09 Score=105.18 Aligned_cols=149 Identities=23% Similarity=0.459 Sum_probs=95.5
Q ss_pred CCCccccCccccccccccccccCCCC-CCCCCCCCCCccccCCCCCchHHHHH---hhhhhhcccCC----CCccccccc
Q 018874 76 NSKSKAIGKMFFKTKLCCKFRNGTCP-YITNCNFAHSIEELRRPPPNWQEIVA---AHEEERASTNE----IPREEFQIP 147 (349)
Q Consensus 76 ~~~~~~~~~~~yKTklC~~f~~G~C~-~G~~C~FaH~~eelR~pp~~~~e~~~---~~~e~~~~~~~----~~r~~~q~P 147 (349)
+...+.++-..|||-+|..-..|.|. .+..|.|+|...++|.+...+.++.. ...++...... .-.++.+.|
T Consensus 104 ~~~e~~~hL~~~k~~~~~tda~g~~~~~v~~~~~~~~~~~~r~~~~~l~e~~~~~~~~~~e~~~~~~~~~~~y~~Dp~~p 183 (528)
T KOG1595|consen 104 GDTERTYHLRYYKTLPCVTDARGNCVKNVLHCAFAHGPNDLRPPVEDLLELQGGSGLPDDEPEVESKLDVTEYPEDPSWP 183 (528)
T ss_pred CCcceeEeccccccccCccccCCCcccCcccccccCCccccccHHHHHHhcccccCccCCCcccccccccccccCCCCcc
Confidence 33356677788999999965679994 46789999999999987654444320 00000100000 111112223
Q ss_pred ccc-ccccccccccccccccCccccccCCCCCCCCCCCCC-CccccccccccccCCCCCCCCCCCcccccCCCCCccccC
Q 018874 148 SIV-STNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLH-DEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVK 225 (349)
Q Consensus 148 ~~~-s~~~~~~~~~~yKt~~C~~f~~~G~C~~G~~C~f~H-~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~ 225 (349)
.|. .++-.....-.||++.|. .+.|.-+..|.|+| .+...+|....
T Consensus 184 di~~~ys~DeFrMy~fKir~C~----R~~shDwteCPf~HpgEkARRRDPRk---------------------------- 231 (528)
T KOG1595|consen 184 DINGIYSSDEFRMYSFKIRRCS----RPRSHDWTECPFAHPGEKARRRDPRK---------------------------- 231 (528)
T ss_pred cccccccccceEEEeeeecccC----CccCCCcccCCccCCCcccccCCccc----------------------------
Confidence 321 001111223469999996 35899999999999 66666654221
Q ss_pred CCcccccccccccccccCCCCCCCCCCCCcccc
Q 018874 226 PSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258 (349)
Q Consensus 226 p~~~Kt~lC~~f~~~G~C~~G~~C~FaHg~~EL 258 (349)
-.|....|+.|. +|.|..||.|.|+||..|.
T Consensus 232 -yhYs~tpCPefr-kG~C~rGD~CEyaHgvfEc 262 (528)
T KOG1595|consen 232 -YHYSSTPCPEFR-KGSCERGDSCEYAHGVFEC 262 (528)
T ss_pred -ccccCccCcccc-cCCCCCCCccccccceehh
Confidence 246677899998 6999999999999998874
No 8
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.50 E-value=2.6e-08 Score=62.65 Aligned_cols=27 Identities=56% Similarity=1.232 Sum_probs=21.9
Q ss_pred ccccccccccccccCCCCCCCCCCCCc
Q 018874 229 WKTRICNKWELTGYCPFGNKCHFAHGI 255 (349)
Q Consensus 229 ~Kt~lC~~f~~~G~C~~G~~C~FaHg~ 255 (349)
||+++|++|+.+|.|++|++|+|+|+.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 578899999989999999999999974
No 9
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.39 E-value=7.2e-08 Score=60.66 Aligned_cols=25 Identities=56% Similarity=1.158 Sum_probs=20.5
Q ss_pred cccccccccc-cCCCCCCCCCCCCCC
Q 018874 87 FKTKLCCKFR-NGTCPYITNCNFAHS 111 (349)
Q Consensus 87 yKTklC~~f~-~G~C~~G~~C~FaH~ 111 (349)
|||++|.+|+ .|.|++|+.|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 6899999999 599999999999997
No 10
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.27 E-value=1.9e-06 Score=82.75 Aligned_cols=90 Identities=24% Similarity=0.664 Sum_probs=70.6
Q ss_pred ccccccccccccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccc
Q 018874 86 FFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR 165 (349)
Q Consensus 86 ~yKTklC~~f~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~ 165 (349)
.+...+|++|..|.|+.+..|.|+|+..-++. .+.
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s---------------------------------------------~~~ 135 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSS---------------------------------------------QGP 135 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCcccc---------------------------------------------cCC
Confidence 56779999999999999999999998732220 133
Q ss_pred cCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccc--cccC
Q 018874 166 HCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL--TGYC 243 (349)
Q Consensus 166 ~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~--~G~C 243 (349)
.|+.|...|.|..|..|.|.|...... ...|.+|.. ++.|
T Consensus 136 ~c~~Fs~~G~cs~g~~c~~~h~dp~~~--------------------------------------~~~~~~~~~~~~~f~ 177 (285)
T COG5084 136 PCRSFSLKGSCSSGPSCGYSHIDPDSF--------------------------------------AGNCDQYSGATYGFC 177 (285)
T ss_pred CcccccccceeccCCCCCccccCcccc--------------------------------------cccccccCccccccc
Confidence 788888999999999999999874311 123665553 7999
Q ss_pred CCCCCCCCCCCcccc
Q 018874 244 PFGNKCHFAHGIQEL 258 (349)
Q Consensus 244 ~~G~~C~FaHg~~EL 258 (349)
++|..|+|.|+...+
T Consensus 178 p~g~~c~~~H~~~~~ 192 (285)
T COG5084 178 PLGASCKFSHTLKRV 192 (285)
T ss_pred CCCCccccccccccc
Confidence 999999999998743
No 11
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.14 E-value=2.7e-06 Score=78.69 Aligned_cols=23 Identities=26% Similarity=0.771 Sum_probs=14.8
Q ss_pred cCccccccCCCCCCCCCCCCCCccc
Q 018874 166 HCKKFYTEEGCPYGENCTFLHDEQS 190 (349)
Q Consensus 166 ~C~~f~~~G~C~~G~~C~f~H~~~e 190 (349)
.|+ |+..|.|. ..+|+|.|..-.
T Consensus 263 acr-yfllgkcn-npncryvhihys 285 (377)
T KOG1492|consen 263 ACR-YFLLGKCN-NPNCRYVHIHYS 285 (377)
T ss_pred hhh-hhhhccCC-CCCceEEEEeec
Confidence 564 44557776 577888776544
No 12
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.04 E-value=2e-06 Score=79.52 Aligned_cols=104 Identities=26% Similarity=0.533 Sum_probs=71.7
Q ss_pred ccccccc-cCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccccCc
Q 018874 90 KLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCK 168 (349)
Q Consensus 90 klC~~f~-~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~C~ 168 (349)
.-|++|. +|.|-.|..|+|.|.. . +..+|+
T Consensus 207 vycryynangicgkgaacrfvhep--t-----------------------------------------------rkticp 237 (377)
T KOG1492|consen 207 VYCRYYNANGICGKGAACRFVHEP--T-----------------------------------------------RKTICP 237 (377)
T ss_pred eEEEEecCCCcccCCceeeeeccc--c-----------------------------------------------ccccCh
Confidence 5699998 7999999999999954 1 124898
Q ss_pred cccccCCCCCCCCCCCCCCccccccccccc-cCCCCCCCCCCCcccccCCCCCccccCC-CcccccccccccccccCCCC
Q 018874 169 KFYTEEGCPYGENCTFLHDEQSKNRESVAI-SLGPGGYGGGGAAAAAAGNNIGVSNVKP-SNWKTRICNKWELTGYCPFG 246 (349)
Q Consensus 169 ~f~~~G~C~~G~~C~f~H~~~e~~res~~~-s~~ps~~~~~~~~~~~~~~~~~~~~~~p-~~~Kt~lC~~f~~~G~C~~G 246 (349)
+|. .|.|.....|..+|..+..+.+.+.. -+| -+.+++....+. -.-...+|-.|.+.|+|..|
T Consensus 238 kfl-ngrcnkaedcnlsheldprripacryfllg-------------kcnnpncryvhihysenapicfefakygfcelg 303 (377)
T KOG1492|consen 238 KFL-NGRCNKAEDCNLSHELDPRRIPACRYFLLG-------------KCNNPNCRYVHIHYSENAPICFEFAKYGFCELG 303 (377)
T ss_pred HHh-cCccCchhcCCcccccCccccchhhhhhhc-------------cCCCCCceEEEEeecCCCceeeeehhcceeccc
Confidence 776 59999999999999998765543321 111 112222111111 01123479999999999999
Q ss_pred CCCCCCCCcc
Q 018874 247 NKCHFAHGIQ 256 (349)
Q Consensus 247 ~~C~FaHg~~ 256 (349)
..|.-.|-.+
T Consensus 304 tscknqhilq 313 (377)
T KOG1492|consen 304 TSCKNQHILQ 313 (377)
T ss_pred cccccceeee
Confidence 9999999654
No 13
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.03 E-value=2.9e-06 Score=52.60 Aligned_cols=25 Identities=52% Similarity=1.157 Sum_probs=23.5
Q ss_pred cccccccccccCCCCCCCCCCCCCC
Q 018874 87 FKTKLCCKFRNGTCPYITNCNFAHS 111 (349)
Q Consensus 87 yKTklC~~f~~G~C~~G~~C~FaH~ 111 (349)
+|+.+|.+|.+|.|.+|+.|+|+|.
T Consensus 2 ~k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCccCCCCCCCCCcCCCCc
Confidence 6889999999999999999999996
No 14
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=97.96 E-value=5.5e-06 Score=81.18 Aligned_cols=110 Identities=23% Similarity=0.370 Sum_probs=67.2
Q ss_pred cccccccc--CCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccccC
Q 018874 90 KLCCKFRN--GTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHC 167 (349)
Q Consensus 90 klC~~f~~--G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~C 167 (349)
..|.++.. -.|.+|..|.+.|.... ...++++|
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~vc 80 (325)
T KOG1040|consen 46 ATCEFNESREKPCERGPICPKSHNDVS---------------------------------------------DSRGKVVC 80 (325)
T ss_pred chhcccccCCCCccCCCCCccccCCcc---------------------------------------------ccCCceee
Confidence 45666654 57999999999996521 02356799
Q ss_pred ccccccCCCCCCCCCCCCCCccccc-cccccccCCCCCCCCCCCcccccCCC-CCccccCCC-cccccccccccccccCC
Q 018874 168 KKFYTEEGCPYGENCTFLHDEQSKN-RESVAISLGPGGYGGGGAAAAAAGNN-IGVSNVKPS-NWKTRICNKWELTGYCP 244 (349)
Q Consensus 168 ~~f~~~G~C~~G~~C~f~H~~~e~~-res~~~s~~ps~~~~~~~~~~~~~~~-~~~~~~~p~-~~Kt~lC~~f~~~G~C~ 244 (349)
+ |+..|.|+.|+.|.|+|...-.+ ++-..+++. +.+.+ ...+..+.. .-+..+|+.|. .|+|+
T Consensus 81 K-~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~------------g~c~~~~~c~y~h~dpqt~~k~c~~~~-~g~c~ 146 (325)
T KOG1040|consen 81 K-HWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLF------------GECTNGKDCPYLHGDPQTAIKKCKWYK-EGFCR 146 (325)
T ss_pred h-hhhhhhhhccCcCcchhhhhhcccccccccccc------------cccccccCCcccCCChhhhhhccchhh-hccCC
Confidence 5 55679999999999999873221 122212110 11112 112222222 34455787665 78888
Q ss_pred CCCCCCCCCCcccc
Q 018874 245 FGNKCHFAHGIQEL 258 (349)
Q Consensus 245 ~G~~C~FaHg~~EL 258 (349)
.|+.|++.|-...+
T Consensus 147 ~g~~c~~~h~~~~~ 160 (325)
T KOG1040|consen 147 GGPSCKKRHERKVL 160 (325)
T ss_pred CcchhhhhhhcccC
Confidence 88888888876643
No 15
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.87 E-value=8.2e-06 Score=50.53 Aligned_cols=26 Identities=46% Similarity=1.307 Sum_probs=22.9
Q ss_pred ccccccccccccccCCCCCCCCCCCCc
Q 018874 229 WKTRICNKWELTGYCPFGNKCHFAHGI 255 (349)
Q Consensus 229 ~Kt~lC~~f~~~G~C~~G~~C~FaHg~ 255 (349)
+|+.+|++| .+|.|++|+.|+|.|..
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 467789999 59999999999999973
No 16
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.77 E-value=1e-05 Score=78.41 Aligned_cols=60 Identities=27% Similarity=0.501 Sum_probs=45.2
Q ss_pred ccccccccccCCCCCCCC-CCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccccccccccccc
Q 018874 88 KTKLCCKFRNGTCPYITN-CNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRH 166 (349)
Q Consensus 88 KTklC~~f~~G~C~~G~~-C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~ 166 (349)
..++|+.|+.|+|.+|+. |+|+|....+.+ ..-+...
T Consensus 36 ~~eVCReF~rn~C~R~d~~CkfaHP~~~~~V------------------------------------------~~g~v~a 73 (331)
T KOG2494|consen 36 TLEVCREFLRNTCSRGDRECKFAHPPKNCQV------------------------------------------SNGRVIA 73 (331)
T ss_pred HHHHHHHHHhccccCCCccccccCCCCCCCc------------------------------------------cCCeEEE
Confidence 458999999999999998 999997642211 0124457
Q ss_pred CccccccCCCCCCCCCCCCCCcccc
Q 018874 167 CKKFYTEEGCPYGENCTFLHDEQSK 191 (349)
Q Consensus 167 C~~f~~~G~C~~G~~C~f~H~~~e~ 191 (349)
|. -+..|.|. .++|+|+|...++
T Consensus 74 C~-Ds~kgrCs-R~nCkylHpp~hl 96 (331)
T KOG2494|consen 74 CF-DSQKGRCS-RENCKYLHPPQHL 96 (331)
T ss_pred Ee-ccccCccC-cccceecCCChhh
Confidence 94 45669999 5779999988765
No 17
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.60 E-value=1.8e-05 Score=80.31 Aligned_cols=60 Identities=38% Similarity=0.851 Sum_probs=45.9
Q ss_pred ccccccccccC---CCCCCCCCCCCCCccc-cCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccc
Q 018874 88 KTKLCCKFRNG---TCPYITNCNFAHSIEE-LRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYK 163 (349)
Q Consensus 88 KTklC~~f~~G---~C~~G~~C~FaH~~ee-lR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yK 163 (349)
+..||+....| .|.||++|+|.|+++- |...+++ |
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~D---------------------------i-------------- 113 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPD---------------------------I-------------- 113 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCcc---------------------------c--------------
Confidence 56999999865 7999999999999855 3322221 1
Q ss_pred cccCccccccCCCCCCCCCCCCCCc
Q 018874 164 GRHCKKFYTEEGCPYGENCTFLHDE 188 (349)
Q Consensus 164 t~~C~~f~~~G~C~~G~~C~f~H~~ 188 (349)
...|..|...|.|+||..|||+-..
T Consensus 114 g~~Cp~f~s~G~Cp~G~~CRFl~aH 138 (614)
T KOG2333|consen 114 GPSCPVFESLGFCPYGFKCRFLGAH 138 (614)
T ss_pred CCccceeeccccCCccceeehhhcc
Confidence 1368889999999999999997533
No 18
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=6.3e-05 Score=76.01 Aligned_cols=86 Identities=24% Similarity=0.417 Sum_probs=62.4
Q ss_pred ccccccccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccccCcc
Q 018874 90 KLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKK 169 (349)
Q Consensus 90 klC~~f~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~C~~ 169 (349)
..|.+|+...|++++.|.|.|...-|. -...|..
T Consensus 4 ~dcyff~ys~cKk~d~c~~rh~E~al~----------------------------------------------n~t~C~~ 37 (667)
T KOG4791|consen 4 EDCYFFFYSTCKKGDSCPFRHCEAALG----------------------------------------------NETVCTL 37 (667)
T ss_pred ccchhhhhhhhhccCcCcchhhHHHhc----------------------------------------------Ccchhhh
Confidence 468899989999999999999652211 1247977
Q ss_pred ccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccccc-CCCCCC
Q 018874 170 FYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGY-CPFGNK 248 (349)
Q Consensus 170 f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~-C~~G~~ 248 (349)
|...-.|+. .|+|-|....+.| ...+|.+|. ++. |.+ .+
T Consensus 38 w~~~~~C~k--~C~YRHSe~~~kr------------------------------------~e~~CYwe~-~p~gC~k-~~ 77 (667)
T KOG4791|consen 38 WQEGRCCRK--VCRYRHSEIDKKR------------------------------------SEIPCYWEN-QPTGCQK-LN 77 (667)
T ss_pred hhhcCcccc--cccchhhHHhhhc------------------------------------Ccccceeec-CCCccCC-Cc
Confidence 776655764 9999998876432 235797666 666 987 79
Q ss_pred CCCCCCccccccC
Q 018874 249 CHFAHGIQELHRF 261 (349)
Q Consensus 249 C~FaHg~~ELr~~ 261 (349)
|-|.|....|...
T Consensus 78 CgfRH~~pPLkg~ 90 (667)
T KOG4791|consen 78 CGFRHNRPPLKGV 90 (667)
T ss_pred cccccCCCchhhh
Confidence 9999976555443
No 19
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.49 E-value=4.4e-05 Score=74.02 Aligned_cols=60 Identities=27% Similarity=0.589 Sum_probs=45.2
Q ss_pred cccCccccccCCCCCCCC-CCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccccc
Q 018874 164 GRHCKKFYTEEGCPYGEN-CTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGY 242 (349)
Q Consensus 164 t~~C~~f~~~G~C~~G~~-C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~ 242 (349)
-.+|+.|.. +.|.+|++ |+|+|...... -+.-+...|-.|+ +|.
T Consensus 37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~~~---------------------------------V~~g~v~aC~Ds~-kgr 81 (331)
T KOG2494|consen 37 LEVCREFLR-NTCSRGDRECKFAHPPKNCQ---------------------------------VSNGRVIACFDSQ-KGR 81 (331)
T ss_pred HHHHHHHHh-ccccCCCccccccCCCCCCC---------------------------------ccCCeEEEEeccc-cCc
Confidence 358988765 99999999 99999876421 1123345699998 899
Q ss_pred CCCCCCCCCCCCccccc
Q 018874 243 CPFGNKCHFAHGIQELH 259 (349)
Q Consensus 243 C~~G~~C~FaHg~~ELr 259 (349)
|.+ ++|+|.|+..+|+
T Consensus 82 CsR-~nCkylHpp~hlk 97 (331)
T KOG2494|consen 82 CSR-ENCKYLHPPQHLK 97 (331)
T ss_pred cCc-ccceecCCChhhh
Confidence 998 5699999977653
No 20
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.33 E-value=9.3e-05 Score=75.26 Aligned_cols=61 Identities=31% Similarity=0.783 Sum_probs=44.1
Q ss_pred ccccCcccccc--CCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874 163 KGRHCKKFYTE--EGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT 240 (349)
Q Consensus 163 Kt~~C~~f~~~--G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~ 240 (349)
+..+|+..... ..|.||++|+|.|+......- ++.... .-|+.|...
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLat------------------------------K~~Dig-~~Cp~f~s~ 123 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLAT------------------------------KAPDIG-PSCPVFESL 123 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhc------------------------------cCcccC-Cccceeecc
Confidence 34588766655 469999999999999764211 111111 239999999
Q ss_pred ccCCCCCCCCCCCC
Q 018874 241 GYCPFGNKCHFAHG 254 (349)
Q Consensus 241 G~C~~G~~C~FaHg 254 (349)
|+|++|-+|||+-.
T Consensus 124 G~Cp~G~~CRFl~a 137 (614)
T KOG2333|consen 124 GFCPYGFKCRFLGA 137 (614)
T ss_pred ccCCccceeehhhc
Confidence 99999999999743
No 21
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=96.89 E-value=0.00024 Score=66.24 Aligned_cols=31 Identities=45% Similarity=0.712 Sum_probs=28.6
Q ss_pred cccccccccccCCCCCCCCCCCCCCccccCC
Q 018874 87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRR 117 (349)
Q Consensus 87 yKTklC~~f~~G~C~~G~~C~FaH~~eelR~ 117 (349)
-|+.+|..|.++.|..|+.|+|+|+.++.|.
T Consensus 83 pK~~vcalF~~~~c~kg~~ckF~h~~ee~r~ 113 (299)
T COG5252 83 PKTVVCALFLNKTCAKGDACKFAHGKEEARK 113 (299)
T ss_pred chhHHHHHhccCccccCchhhhhcchHHHhh
Confidence 4899999999999999999999999988665
No 22
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=96.86 E-value=0.00023 Score=68.23 Aligned_cols=29 Identities=31% Similarity=0.731 Sum_probs=25.1
Q ss_pred cccccCccccccCCCCCCCCCCCCCCcccc
Q 018874 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSK 191 (349)
Q Consensus 162 yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~ 191 (349)
.|+.+| .|+..|.|..|+.|.|+|+....
T Consensus 90 PKSvvC-afFk~g~C~KG~kCKFsHdl~~~ 118 (343)
T KOG1763|consen 90 PKSVVC-AFFKQGTCTKGDKCKFSHDLAVE 118 (343)
T ss_pred chHHHH-HHHhccCCCCCCcccccchHHHh
Confidence 588899 57778999999999999998764
No 23
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.60 E-value=0.0011 Score=66.13 Aligned_cols=40 Identities=28% Similarity=0.740 Sum_probs=30.7
Q ss_pred ccCCCcccccccccccccccCCCCCCCCCCCCc----cccccCCC
Q 018874 223 NVKPSNWKTRICNKWELTGYCPFGNKCHFAHGI----QELHRFGG 263 (349)
Q Consensus 223 ~~~p~~~Kt~lC~~f~~~G~C~~G~~C~FaHg~----~ELr~~~~ 263 (349)
..+|..-...+|+||+ .|.|+|+.+|||.||. .+|+.|..
T Consensus 132 fl~PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~V~lsslr~yq~ 175 (486)
T KOG2185|consen 132 FLTPTHESMKPCKFFL-EGRCRFGENCRFSHGLDVPLSSLRNYQQ 175 (486)
T ss_pred eecCcchhhccchHhh-ccccccCcccccccCcccchhhcccCCC
Confidence 3455556667899998 8999999999999984 35565543
No 24
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.55 E-value=0.007 Score=58.49 Aligned_cols=86 Identities=22% Similarity=0.584 Sum_probs=62.7
Q ss_pred ccccccc-ccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccccC
Q 018874 89 TKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHC 167 (349)
Q Consensus 89 TklC~~f-~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~C 167 (349)
.-.|++| ..|.|..|..|.++|..-+-. ...|
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~-----------------------------------------------~~~~ 166 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSF-----------------------------------------------AGNC 166 (285)
T ss_pred CCCcccccccceeccCCCCCccccCcccc-----------------------------------------------cccc
Confidence 5679999 589999999999999761111 1245
Q ss_pred cccc--ccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccccccCCC
Q 018874 168 KKFY--TEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPF 245 (349)
Q Consensus 168 ~~f~--~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~C~~ 245 (349)
..|. ..+.|.+|..|++.|..... .|.+..|..|. .++|+.
T Consensus 167 ~~~~~~~~~f~p~g~~c~~~H~~~~~------------------------------------~~~~~p~~~y~-~~fsP~ 209 (285)
T COG5084 167 DQYSGATYGFCPLGASCKFSHTLKRV------------------------------------SYGSSPCGNYT-PPFSPP 209 (285)
T ss_pred cccCcccccccCCCCccccccccccc------------------------------------cccccccccCc-CCcCCC
Confidence 3333 26899999999999988642 12223688887 788888
Q ss_pred CCC--------------CCCCCCcccc
Q 018874 246 GNK--------------CHFAHGIQEL 258 (349)
Q Consensus 246 G~~--------------C~FaHg~~EL 258 (349)
|.. |.+.|+..+.
T Consensus 210 g~~~~~~~~~~~~~~~~~~~~~ps~~~ 236 (285)
T COG5084 210 GTPSESVSSWGYGKGTSCSLSHPSLNI 236 (285)
T ss_pred CCCccccccccccccccccCCCccccC
Confidence 888 9999986543
No 25
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.005 Score=62.64 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=61.8
Q ss_pred ccccccccCC-CCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccccCc
Q 018874 90 KLCCKFRNGT-CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCK 168 (349)
Q Consensus 90 klC~~f~~G~-C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~C~ 168 (349)
..|.+|+.+. |+. .|.|-|+.-.+.+ ...+|
T Consensus 33 t~C~~w~~~~~C~k--~C~YRHSe~~~kr---------------------------------------------~e~~C- 64 (667)
T KOG4791|consen 33 TVCTLWQEGRCCRK--VCRYRHSEIDKKR---------------------------------------------SEIPC- 64 (667)
T ss_pred chhhhhhhcCcccc--cccchhhHHhhhc---------------------------------------------Ccccc-
Confidence 6799999775 554 8999997633221 23489
Q ss_pred cccccCC-CCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccccccCCCCC
Q 018874 169 KFYTEEG-CPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGN 247 (349)
Q Consensus 169 ~f~~~G~-C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~C~~G~ 247 (349)
+|...+. |. .++|-|-|....+.-....... .....-++....+. .....-....|-+|+ .++|..++
T Consensus 65 Ywe~~p~gC~-k~~CgfRH~~pPLkg~l~~~p~------~pe~ev~~~~~SAq---~~sV~~~p~P~l~~~-K~~e~~~D 133 (667)
T KOG4791|consen 65 YWENQPTGCQ-KLNCGFRHNRPPLKGVLPTVPE------SPEEEVKASQLSAQ---QNSVQSNPSPQLRSV-KKVESSED 133 (667)
T ss_pred eeecCCCccC-CCccccccCCCchhhhccCCCC------CcccccccccccCC---CcccccCCchHHHHh-hhhhhhcc
Confidence 5666666 98 6999999966543211000000 00000000000000 001112234688887 89999999
Q ss_pred CCCCCCCcc
Q 018874 248 KCHFAHGIQ 256 (349)
Q Consensus 248 ~C~FaHg~~ 256 (349)
.|-|.|...
T Consensus 134 ~~s~Lh~P~ 142 (667)
T KOG4791|consen 134 VPSPLHPPV 142 (667)
T ss_pred ccccCCCCc
Confidence 999999753
No 26
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.95 E-value=0.0028 Score=63.25 Aligned_cols=39 Identities=33% Similarity=0.865 Sum_probs=29.3
Q ss_pred ccccccccccCCCCCCCCCCCCCCc----cccCC-CCCchHHHH
Q 018874 88 KTKLCCKFRNGTCPYITNCNFAHSI----EELRR-PPPNWQEIV 126 (349)
Q Consensus 88 KTklC~~f~~G~C~~G~~C~FaH~~----eelR~-pp~~~~e~~ 126 (349)
-.++|.||+.|.|+|+++|+|+|+. +.||. -+++|..|+
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~~V~lsslr~yq~pD~s~L~ 182 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGLDVPLSSLRNYQQPDWSQLM 182 (486)
T ss_pred hhccchHhhccccccCcccccccCcccchhhcccCCCccHHHHh
Confidence 4588999999999999999999987 33432 344565544
No 27
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.61 E-value=0.0076 Score=34.77 Aligned_cols=19 Identities=32% Similarity=0.728 Sum_probs=16.3
Q ss_pred ccccccccccCCCCCCCCCCCC
Q 018874 233 ICNKWELTGYCPFGNKCHFAHG 254 (349)
Q Consensus 233 lC~~f~~~G~C~~G~~C~FaHg 254 (349)
+|+||. .|++++.|.|.|+
T Consensus 1 ~Ck~~~---~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGP---NCTNGDNCPFSHP 19 (19)
T ss_pred CCcCcC---CCCCCCcCccCCc
Confidence 488876 3999999999995
No 28
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.55 E-value=0.0086 Score=34.54 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=16.0
Q ss_pred cccccccCCCCCCCCCCCCCC
Q 018874 91 LCCKFRNGTCPYITNCNFAHS 111 (349)
Q Consensus 91 lC~~f~~G~C~~G~~C~FaH~ 111 (349)
+|++|.. |+++++|.|+|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4887754 999999999994
No 29
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=94.90 E-value=0.0065 Score=58.46 Aligned_cols=31 Identities=32% Similarity=0.725 Sum_probs=27.1
Q ss_pred cccccccccccCCCCCCCCCCCCCCccccCC
Q 018874 87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRR 117 (349)
Q Consensus 87 yKTklC~~f~~G~C~~G~~C~FaH~~eelR~ 117 (349)
-|+.+|.+|.+|+|..|+.|+|+|+....|.
T Consensus 90 PKSvvCafFk~g~C~KG~kCKFsHdl~~~~k 120 (343)
T KOG1763|consen 90 PKSVVCAFFKQGTCTKGDKCKFSHDLAVERK 120 (343)
T ss_pred chHHHHHHHhccCCCCCCcccccchHHHhhh
Confidence 4889999999999999999999999855443
No 30
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=94.76 E-value=0.0073 Score=56.50 Aligned_cols=84 Identities=21% Similarity=0.458 Sum_probs=48.6
Q ss_pred cccccCccccccCCCCCCCCCCCCCCcccccc-ccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccc-
Q 018874 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNR-ESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL- 239 (349)
Q Consensus 162 yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~r-es~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~- 239 (349)
.|+.+|..| ..+.|..|+.|.|+|+..+.++ +...+-.....- ..+.+. + ..|-.--.++|+||..
T Consensus 83 pK~~vcalF-~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~------~ed~pl---~--krP~intd~VCkffieA 150 (299)
T COG5252 83 PKTVVCALF-LNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDK------EEDVPL---G--KRPWINTDRVCKFFIEA 150 (299)
T ss_pred chhHHHHHh-ccCccccCchhhhhcchHHHhhhcccchhhhhhhh------hccCCc---c--cCCCCChhHHHHHHHHH
Confidence 488899655 5699999999999999876543 111111000000 000000 0 1111122358998854
Q ss_pred --cc------cCCCC-CCCCCCCCccc
Q 018874 240 --TG------YCPFG-NKCHFAHGIQE 257 (349)
Q Consensus 240 --~G------~C~~G-~~C~FaHg~~E 257 (349)
+| .||+| .+|-|.|.+.+
T Consensus 151 ~e~GkYgw~W~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 151 MESGKYGWGWTCPNGNMRCSYIHKLPD 177 (299)
T ss_pred HhcCCccceeeCCCCCceeeeeeccCc
Confidence 23 49999 79999998765
No 31
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.48 E-value=0.013 Score=53.60 Aligned_cols=30 Identities=30% Similarity=0.927 Sum_probs=26.1
Q ss_pred ccccccccccccccCCCCCCCCCCCCcccc
Q 018874 229 WKTRICNKWELTGYCPFGNKCHFAHGIQEL 258 (349)
Q Consensus 229 ~Kt~lC~~f~~~G~C~~G~~C~FaHg~~EL 258 (349)
+...+|+.|..+|||-||+.|.|.|..++.
T Consensus 139 ~qpdVCKdyk~TGYCGYGDsCKflH~R~D~ 168 (259)
T COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHDRSDF 168 (259)
T ss_pred cCcccccchhhcccccCCchhhhhhhhhhh
Confidence 445689999999999999999999987654
No 32
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.92 E-value=0.022 Score=52.12 Aligned_cols=35 Identities=20% Similarity=0.601 Sum_probs=28.9
Q ss_pred Cccccccccccccc-cCCCCCCCCCCCCCCccccCC
Q 018874 83 GKMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRR 117 (349)
Q Consensus 83 ~~~~yKTklC~~f~-~G~C~~G~~C~FaH~~eelR~ 117 (349)
--+.|.-.+|..|. +|.|-||+.|+|+|..++...
T Consensus 135 ~viD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~Kt 170 (259)
T COG5152 135 EVIDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFKT 170 (259)
T ss_pred ceeecCcccccchhhcccccCCchhhhhhhhhhhhc
Confidence 34556678999998 899999999999999876543
No 33
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.088 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.846 Sum_probs=22.3
Q ss_pred ccCccccccCCCCCCCCCCCCCCccc
Q 018874 165 RHCKKFYTEEGCPYGENCTFLHDEQS 190 (349)
Q Consensus 165 ~~C~~f~~~G~C~~G~~C~f~H~~~e 190 (349)
++| +|+..|.|++|+.|+|.|+...
T Consensus 9 tic-~~~~~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TIC-KYYQKGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhh-hhcccccccccceeeeeccCch
Confidence 689 5778899999999999999984
No 34
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.92 E-value=0.16 Score=49.16 Aligned_cols=30 Identities=33% Similarity=0.999 Sum_probs=26.0
Q ss_pred ccccccccccccccCCCCCCCCCCCCcccc
Q 018874 229 WKTRICNKWELTGYCPFGNKCHFAHGIQEL 258 (349)
Q Consensus 229 ~Kt~lC~~f~~~G~C~~G~~C~FaHg~~EL 258 (349)
|..-+|+.|..+|+|-||+.|.|.|.....
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 445689999999999999999999987654
No 35
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=84.20 E-value=0.61 Score=28.29 Aligned_cols=20 Identities=35% Similarity=0.766 Sum_probs=16.5
Q ss_pred ccccccccC-CCCCCCCCCCCC
Q 018874 90 KLCCKFRNG-TCPYITNCNFAH 110 (349)
Q Consensus 90 klC~~f~~G-~C~~G~~C~FaH 110 (349)
.||.+.++| .|.. +.|.|.|
T Consensus 1 ~lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 1 PLCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCCccccCCCeeCC-CCCCccc
Confidence 479999987 9954 5899999
No 36
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.85 E-value=0.4 Score=47.77 Aligned_cols=24 Identities=33% Similarity=1.025 Sum_probs=22.4
Q ss_pred cccccccccccCCCCCCCCCCCCcc
Q 018874 232 RICNKWELTGYCPFGNKCHFAHGIQ 256 (349)
Q Consensus 232 ~lC~~f~~~G~C~~G~~C~FaHg~~ 256 (349)
.+|+||+ .|+|.+|+.|||.|...
T Consensus 9 tic~~~~-~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQ-KGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcc-cccccccceeeeeccCc
Confidence 6799998 89999999999999977
No 37
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.62 E-value=0.42 Score=46.39 Aligned_cols=33 Identities=33% Similarity=0.790 Sum_probs=28.1
Q ss_pred ccccccccCccccccCCCCCCCCCCCCCCcccc
Q 018874 159 QRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSK 191 (349)
Q Consensus 159 ~~~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~ 191 (349)
..-|..-+|+.|..+|+|-||+.|.|+|.....
T Consensus 181 ~~d~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 181 RIDYQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred eeecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 334666789999999999999999999998754
No 38
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=78.18 E-value=2.5 Score=45.08 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=15.3
Q ss_pred ccccccccccccCCCCCCCCCCCCcc
Q 018874 231 TRICNKWELTGYCPFGNKCHFAHGIQ 256 (349)
Q Consensus 231 t~lC~~f~~~G~C~~G~~C~FaHg~~ 256 (349)
..+|+|+ +.|.+ -.|+|.|+..
T Consensus 625 ~~~CrY~---pnCrn-m~C~F~HPk~ 646 (681)
T KOG3702|consen 625 RGLCRYR---PNCRN-MQCKFYHPKT 646 (681)
T ss_pred cccceec---cCcCC-ccccccCCcc
Confidence 4578764 46776 5888998754
No 39
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=75.59 E-value=3.9 Score=43.74 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=10.8
Q ss_pred ccCCCCCCCCCCCCcc
Q 018874 241 GYCPFGNKCHFAHGIQ 256 (349)
Q Consensus 241 G~C~~G~~C~FaHg~~ 256 (349)
-.|+.-..|-|.|...
T Consensus 651 ~~c~~~~sc~fYh~r~ 666 (681)
T KOG3702|consen 651 TNCPNNPSCTFYHERP 666 (681)
T ss_pred ccCCCCcccccccCCc
Confidence 3577667777888643
No 40
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=74.40 E-value=1.4 Score=42.03 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=26.1
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCc
Q 018874 83 GKMFFKTKLCCKFRNGTCPYITNCNFAHSI 112 (349)
Q Consensus 83 ~~~~yKTklC~~f~~G~C~~G~~C~FaH~~ 112 (349)
+-..|+...|..|..+.|.+|..|+|.|-.
T Consensus 146 pvT~~rea~C~~~e~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 146 PVTDFREAICGQFERTECSRGGACNFMHVK 175 (260)
T ss_pred CcCchhhhhhcccccccCCCCCcCcchhhh
Confidence 344678899999998899999999999965
No 41
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=67.32 E-value=3.4 Score=41.10 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=22.0
Q ss_pred cccccccccCCCCCCCCCCCCCCc
Q 018874 89 TKLCCKFRNGTCPYITNCNFAHSI 112 (349)
Q Consensus 89 TklC~~f~~G~C~~G~~C~FaH~~ 112 (349)
-.+|.+|..|.|++|++|.|.|..
T Consensus 161 p~Icsf~v~geckRG~ec~yrhEk 184 (377)
T KOG0153|consen 161 PHICSFFVKGECKRGAECPYRHEK 184 (377)
T ss_pred CccccceeeccccccccccccccC
Confidence 378999999999999999999966
No 42
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=55.30 E-value=5.6 Score=38.03 Aligned_cols=27 Identities=30% Similarity=0.781 Sum_probs=23.6
Q ss_pred cccccccccccccccCCCCCCCCCCCCc
Q 018874 228 NWKTRICNKWELTGYCPFGNKCHFAHGI 255 (349)
Q Consensus 228 ~~Kt~lC~~f~~~G~C~~G~~C~FaHg~ 255 (349)
.++...|..|. .+.|.+|..|.|.|..
T Consensus 149 ~~rea~C~~~e-~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 149 DFREAICGQFE-RTECSRGGACNFMHVK 175 (260)
T ss_pred chhhhhhcccc-cccCCCCCcCcchhhh
Confidence 57778999998 5599999999999974
No 43
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=50.28 E-value=3.3 Score=28.79 Aligned_cols=10 Identities=40% Similarity=1.268 Sum_probs=7.7
Q ss_pred cccccccccc
Q 018874 338 SRIYGDWIDD 347 (349)
Q Consensus 338 ~~~~~~~~~~ 347 (349)
.=+|+||+|+
T Consensus 19 RLvYADWL~e 28 (42)
T TIGR02996 19 RLVYADWLDE 28 (42)
T ss_pred HHHHHHHHHH
Confidence 3479999985
No 44
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=40.76 E-value=12 Score=37.31 Aligned_cols=23 Identities=30% Similarity=0.751 Sum_probs=20.6
Q ss_pred ccccccccccCCCCCCCCCCCCcc
Q 018874 233 ICNKWELTGYCPFGNKCHFAHGIQ 256 (349)
Q Consensus 233 lC~~f~~~G~C~~G~~C~FaHg~~ 256 (349)
+|.||. .|.|.+|+.|.|.|-..
T Consensus 163 Icsf~v-~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 163 ICSFFV-KGECKRGAECPYRHEKP 185 (377)
T ss_pred ccccee-eccccccccccccccCC
Confidence 799998 78999999999999754
No 45
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=38.77 E-value=4.2 Score=32.15 Aligned_cols=7 Identities=57% Similarity=1.754 Sum_probs=2.8
Q ss_pred ccccccc
Q 018874 340 IYGDWID 346 (349)
Q Consensus 340 ~~~~~~~ 346 (349)
||.+|||
T Consensus 69 VY~~wiD 75 (81)
T PF05129_consen 69 VYSEWID 75 (81)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 3344443
No 46
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=23.57 E-value=28 Score=36.13 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=24.2
Q ss_pred ccccccccccccccCCCCCCCCCCCCcc
Q 018874 229 WKTRICNKWELTGYCPFGNKCHFAHGIQ 256 (349)
Q Consensus 229 ~Kt~lC~~f~~~G~C~~G~~C~FaHg~~ 256 (349)
+....|++|..+|.|..|+.|.+.|+..
T Consensus 210 ~s~~r~k~fee~g~~~r~el~p~~hg~~ 237 (526)
T KOG2135|consen 210 NSENRRKFFEEFGVLERGELCPTHHGCV 237 (526)
T ss_pred ccHHhhhhhHhhceeeeccccccccccc
Confidence 3345799999999999999999999964
No 47
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=22.17 E-value=21 Score=29.54 Aligned_cols=7 Identities=71% Similarity=1.849 Sum_probs=3.8
Q ss_pred ccccccc
Q 018874 340 IYGDWID 346 (349)
Q Consensus 340 ~~~~~~~ 346 (349)
||-||||
T Consensus 70 VYSdWiD 76 (109)
T KOG3214|consen 70 VYSDWID 76 (109)
T ss_pred HHHHHHH
Confidence 4555555
Done!