Query 018874
Match_columns 349
No_of_seqs 263 out of 1581
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.6 2.2E-16 7.4E-21 121.8 3.6 70 83-190 6-76 (77)
2 1m9o_A Tristetraproline; Cys3H 99.6 4.2E-16 1.4E-20 120.2 3.5 69 160-257 8-76 (77)
3 2d9n_A Cleavage and polyadenyl 99.3 5.4E-13 1.9E-17 103.3 4.4 57 86-190 7-63 (77)
4 2cqe_A KIAA1064 protein; CCCH 99.1 2.5E-11 8.7E-16 98.1 4.3 53 86-190 10-62 (98)
5 2cqe_A KIAA1064 protein; CCCH 99.1 7.3E-11 2.5E-15 95.4 4.1 52 161-256 10-61 (98)
6 2rhk_C Cleavage and polyadenyl 99.1 4E-11 1.4E-15 91.6 2.0 57 86-190 13-69 (72)
7 2d9n_A Cleavage and polyadenyl 99.0 1.1E-10 3.7E-15 90.3 3.8 58 161-258 7-64 (77)
8 3d2q_A Muscleblind-like protei 99.0 1.1E-10 3.7E-15 88.6 2.8 63 87-191 4-67 (70)
9 3d2q_A Muscleblind-like protei 99.0 2E-10 6.8E-15 87.2 2.7 64 163-260 5-69 (70)
10 2rhk_C Cleavage and polyadenyl 98.9 3.2E-10 1.1E-14 86.6 2.2 58 161-258 13-70 (72)
11 2e5s_A Otthump00000018578; ZF- 98.9 2.9E-10 1E-14 91.9 0.8 63 87-191 18-81 (98)
12 2e5s_A Otthump00000018578; ZF- 98.7 1.4E-09 4.8E-14 87.9 0.3 65 162-260 18-83 (98)
13 2d9m_A Zinc finger CCCH-type d 98.7 4.4E-09 1.5E-13 79.2 2.3 39 222-261 11-49 (69)
14 3d2n_A Muscleblind-like protei 98.7 7.5E-09 2.6E-13 81.1 3.3 62 86-191 6-68 (83)
15 3d2n_A Muscleblind-like protei 98.5 5E-08 1.7E-12 76.4 3.1 63 162-260 7-70 (83)
16 2rpp_A Muscleblind-like protei 98.5 4.1E-08 1.4E-12 77.9 2.6 62 86-191 14-76 (89)
17 2d9m_A Zinc finger CCCH-type d 98.4 3.4E-08 1.2E-12 74.3 0.2 30 88-117 19-48 (69)
18 2rpp_A Muscleblind-like protei 98.2 3.9E-07 1.3E-11 72.2 2.6 63 162-260 15-78 (89)
19 3u9g_A Zinc finger CCCH-type a 97.9 5E-06 1.7E-10 75.9 4.2 103 89-257 89-199 (229)
20 2fc6_A Nuclear, target of EGR1 96.4 0.00089 3.1E-08 46.8 1.1 28 229-256 18-45 (50)
21 2lhn_A Nuclear polyadenylated 95.3 0.00064 2.2E-08 52.6 0.0 20 90-112 10-29 (80)
22 2fc6_A Nuclear, target of EGR1 96.1 0.0014 4.7E-08 45.9 0.8 29 162-190 18-46 (50)
23 3u9g_A Zinc finger CCCH-type a 93.0 0.07 2.4E-06 48.7 4.0 47 86-190 148-199 (229)
24 3u1l_A PRE-mRNA-splicing facto 91.0 0.049 1.7E-06 50.2 0.4 23 90-112 71-93 (240)
25 3u1l_A PRE-mRNA-splicing facto 90.3 0.068 2.3E-06 49.2 0.8 25 232-257 71-95 (240)
26 2lhn_A Nuclear polyadenylated 85.8 0.16 5.3E-06 39.1 0.0 21 165-189 10-30 (80)
27 3v33_A Ribonuclease ZC3H12A; r 60.2 1.8 6.3E-05 39.3 0.0 25 230-257 191-215 (223)
28 1wii_A Hypothetical UPF0222 pr 34.3 4.6 0.00016 31.2 -1.5 11 338-348 68-78 (85)
29 3v33_A Ribonuclease ZC3H12A; r 24.7 16 0.00053 33.1 0.0 23 88-112 191-213 (223)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.61 E-value=2.2e-16 Score=121.81 Aligned_cols=70 Identities=37% Similarity=0.857 Sum_probs=32.1
Q ss_pred Cccccccccccccc-cCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccc
Q 018874 83 GKMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRS 161 (349)
Q Consensus 83 ~~~~yKTklC~~f~-~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~ 161 (349)
++.+|||+||++|+ +|.|++|++|+|+|+.++++.... ...
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~--------------------------------------~~~ 47 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR--------------------------------------HPK 47 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC------------------------------------------
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccc--------------------------------------ccc
Confidence 45679999999997 899999999999999988775321 124
Q ss_pred cccccCccccccCCCCCCCCCCCCCCccc
Q 018874 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQS 190 (349)
Q Consensus 162 yKt~~C~~f~~~G~C~~G~~C~f~H~~~e 190 (349)
+++.+|+.|...|.|++|++|+|+|...|
T Consensus 48 ~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 48 YKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp -----------------------------
T ss_pred ccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 67889988999999999999999998765
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.59 E-value=4.2e-16 Score=120.20 Aligned_cols=69 Identities=33% Similarity=0.858 Sum_probs=30.2
Q ss_pred cccccccCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccc
Q 018874 160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL 239 (349)
Q Consensus 160 ~~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~ 239 (349)
.+||+.+|+.|...|.|++|++|+|+|+..+++.. ...+.+++.+|++|..
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~-----------------------------~~~~~~k~~~C~~f~~ 58 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA-----------------------------NRHPKYKTELCHKFKL 58 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT-----------------------------C---------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccc-----------------------------cccccccCCcccchhh
Confidence 46899999888889999999999999999876431 1224678899998888
Q ss_pred cccCCCCCCCCCCCCccc
Q 018874 240 TGYCPFGNKCHFAHGIQE 257 (349)
Q Consensus 240 ~G~C~~G~~C~FaHg~~E 257 (349)
+|.|++|++|+|+|+..|
T Consensus 59 ~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 59 QGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp ------------------
T ss_pred CcCCCCcCcCCCCCCCCC
Confidence 999999999999999865
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.4e-13 Score=103.25 Aligned_cols=57 Identities=26% Similarity=0.504 Sum_probs=47.7
Q ss_pred ccccccccccccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccc
Q 018874 86 FFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR 165 (349)
Q Consensus 86 ~yKTklC~~f~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~ 165 (349)
.+|+++|++|+.|.|++|++|+|+|+.... ++.
T Consensus 7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~-----------------------------------------------~~~ 39 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDMT-----------------------------------------------KMP 39 (77)
T ss_dssp CCTTSBCHHHHTTCCSCTTSSSSBCSCCTT-----------------------------------------------TSC
T ss_pred CCcceeCHhHccCcCCCCCCCCCccccccC-----------------------------------------------cCC
Confidence 568899999999999999999999987331 234
Q ss_pred cCccccccCCCCCCCCCCCCCCccc
Q 018874 166 HCKKFYTEEGCPYGENCTFLHDEQS 190 (349)
Q Consensus 166 ~C~~f~~~G~C~~G~~C~f~H~~~e 190 (349)
+|++|...|.|. |+.|+|+|...+
T Consensus 40 ~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 40 ECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp BCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CCcccCCCCccC-CCCeeccCCCcc
Confidence 797666669999 999999998864
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.13 E-value=2.5e-11 Score=98.11 Aligned_cols=53 Identities=32% Similarity=0.646 Sum_probs=46.7
Q ss_pred ccccccccccccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccc
Q 018874 86 FFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR 165 (349)
Q Consensus 86 ~yKTklC~~f~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~ 165 (349)
.+|+.+|++|++|.|++|++|+|+|+. .
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~~----------------------------------------------------~ 37 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHGD----------------------------------------------------F 37 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSSS----------------------------------------------------S
T ss_pred CCCCccCcccccCcCCCCCCCCCCCCC----------------------------------------------------C
Confidence 468999999999999999999999971 2
Q ss_pred cCccccccCCCCCCCCCCCCCCccc
Q 018874 166 HCKKFYTEEGCPYGENCTFLHDEQS 190 (349)
Q Consensus 166 ~C~~f~~~G~C~~G~~C~f~H~~~e 190 (349)
+|+.|...|.|++|+.|+|+|....
T Consensus 38 ~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 38 PCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp BCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred cCcCcccCCcCCCCCCCcccCCCCc
Confidence 7977778899999999999998653
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.06 E-value=7.3e-11 Score=95.41 Aligned_cols=52 Identities=31% Similarity=0.677 Sum_probs=45.2
Q ss_pred ccccccCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874 161 SYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT 240 (349)
Q Consensus 161 ~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~ 240 (349)
.+|+.+|++| ..|.|++|+.|+|+|+. .+|++|..+
T Consensus 10 ~~k~~lC~~f-~~G~C~~G~~C~f~H~~-------------------------------------------~~C~~f~~~ 45 (98)
T 2cqe_A 10 PKKRELCKFY-ITGFCARAENCPYMHGD-------------------------------------------FPCKLYHTT 45 (98)
T ss_dssp SCCCSBCTTT-TTTCCSCSTTCSSBSSS-------------------------------------------SBCSHHHHT
T ss_pred CCCCccCccc-ccCcCCCCCCCCCCCCC-------------------------------------------CcCcCcccC
Confidence 4789999766 68999999999999981 349999779
Q ss_pred ccCCCCCCCCCCCCcc
Q 018874 241 GYCPFGNKCHFAHGIQ 256 (349)
Q Consensus 241 G~C~~G~~C~FaHg~~ 256 (349)
|.|++|++|+|+|...
T Consensus 46 G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 46 GNCINGDDCMFSHDPL 61 (98)
T ss_dssp SCCSSCTTCSSBCCCC
T ss_pred CcCCCCCCCcccCCCC
Confidence 9999999999999854
No 6
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.05 E-value=4e-11 Score=91.64 Aligned_cols=57 Identities=26% Similarity=0.498 Sum_probs=46.9
Q ss_pred ccccccccccccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccc
Q 018874 86 FFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR 165 (349)
Q Consensus 86 ~yKTklC~~f~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~ 165 (349)
..|+++|++|+.|.|++|++|+|+|+.... ++.
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~-----------------------------------------------~~~ 45 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHEYDMT-----------------------------------------------KMS 45 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCSCCTT-----------------------------------------------SCC
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCccccccc-----------------------------------------------cCC
Confidence 467899999999999999999999986321 234
Q ss_pred cCccccccCCCCCCCCCCCCCCccc
Q 018874 166 HCKKFYTEEGCPYGENCTFLHDEQS 190 (349)
Q Consensus 166 ~C~~f~~~G~C~~G~~C~f~H~~~e 190 (349)
+|++|...|.|.+ +.|+|.|....
T Consensus 46 ~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 46 ECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp BCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred cccccCCCCCCCC-CCeeccCCCcc
Confidence 8966665599999 99999998764
No 7
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.1e-10 Score=90.25 Aligned_cols=58 Identities=29% Similarity=0.548 Sum_probs=47.3
Q ss_pred ccccccCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874 161 SYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT 240 (349)
Q Consensus 161 ~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~ 240 (349)
.+|+.+|++|.. |.|++|+.|+|+|+.... ++.+|++|+..
T Consensus 7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~--------------------------------------~~~~C~~f~~~ 47 (77)
T 2d9n_A 7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT--------------------------------------KMPECYFYSKF 47 (77)
T ss_dssp CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT--------------------------------------TSCBCHHHHHT
T ss_pred CCcceeCHhHcc-CcCCCCCCCCCccccccC--------------------------------------cCCCCcccCCC
Confidence 468899975554 999999999999987531 23579999966
Q ss_pred ccCCCCCCCCCCCCcccc
Q 018874 241 GYCPFGNKCHFAHGIQEL 258 (349)
Q Consensus 241 G~C~~G~~C~FaHg~~EL 258 (349)
|.|. |+.|+|+|...+.
T Consensus 48 G~C~-~~~C~f~H~~~~~ 64 (77)
T 2d9n_A 48 GECS-NKECPFLHIDPES 64 (77)
T ss_dssp CCCC-CSSCSSBCCCTTS
T ss_pred CccC-CCCeeccCCCccc
Confidence 9999 8999999997643
No 8
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.01 E-value=1.1e-10 Score=88.64 Aligned_cols=63 Identities=17% Similarity=0.498 Sum_probs=49.3
Q ss_pred cccccccccccCCCCCCC-CCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccc
Q 018874 87 FKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR 165 (349)
Q Consensus 87 yKTklC~~f~~G~C~~G~-~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~ 165 (349)
.|..+|++|+.|.|.+|+ .|+|+|..+++...+ ...++.
T Consensus 4 ~k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~----------------------------------------~~~~~~ 43 (70)
T 3d2q_A 4 DRLEVCREYQRGNCNRGENDCRFAHPADSTMIDT----------------------------------------NDNTVT 43 (70)
T ss_dssp CEEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBT----------------------------------------TTTEEE
T ss_pred ccchhCHHHhcCCCCCCCCCCCCccCcccccccc----------------------------------------cCCcce
Confidence 467899999999999999 599999886543211 113667
Q ss_pred cCccccccCCCCCCCCCCCCCCcccc
Q 018874 166 HCKKFYTEEGCPYGENCTFLHDEQSK 191 (349)
Q Consensus 166 ~C~~f~~~G~C~~G~~C~f~H~~~e~ 191 (349)
+|..|. .|.|.+| .|+|+|....+
T Consensus 44 vC~~fl-kG~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 44 VCMDYI-KGRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp BCHHHH-TTCCCCT-TCCSBCCCHHH
T ss_pred eccccC-cCCCCCC-CcCeeCCHHHH
Confidence 996555 5999999 99999998764
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.96 E-value=2e-10 Score=87.20 Aligned_cols=64 Identities=23% Similarity=0.608 Sum_probs=51.0
Q ss_pred ccccCccccccCCCCCCC-CCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccccc
Q 018874 163 KGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTG 241 (349)
Q Consensus 163 Kt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G 241 (349)
+..+|+.| ..|.|.+|+ .|+|+|+..+.. ..+...++.+|.+|+ .|
T Consensus 5 k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~-------------------------------~~~~~~~~~vC~~fl-kG 51 (70)
T 3d2q_A 5 RLEVCREY-QRGNCNRGENDCRFAHPADSTM-------------------------------IDTNDNTVTVCMDYI-KG 51 (70)
T ss_dssp EEEBCHHH-HTTCCSSCTTTCSSBCCCTTSC-------------------------------CBTTTTEEEBCHHHH-TT
T ss_pred cchhCHHH-hcCCCCCCCCCCCCccCccccc-------------------------------ccccCCcceeccccC-cC
Confidence 45689766 679999999 599999886521 122345678999998 69
Q ss_pred cCCCCCCCCCCCCcccccc
Q 018874 242 YCPFGNKCHFAHGIQELHR 260 (349)
Q Consensus 242 ~C~~G~~C~FaHg~~ELr~ 260 (349)
.|.+| .|+|.|...+|+.
T Consensus 52 ~C~r~-~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 52 RCSRE-KCKYFHPPAHLQA 69 (70)
T ss_dssp CCCCT-TCCSBCCCHHHHC
T ss_pred CCCCC-CcCeeCCHHHHhc
Confidence 99999 9999999988864
No 10
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.91 E-value=3.2e-10 Score=86.62 Aligned_cols=58 Identities=29% Similarity=0.515 Sum_probs=46.3
Q ss_pred ccccccCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874 161 SYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT 240 (349)
Q Consensus 161 ~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~ 240 (349)
..++.+|++|. .|.|++|+.|+|+|+... .++.+|++|+..
T Consensus 13 ~~k~~vCk~fl-~G~C~~G~~C~fsH~~~~--------------------------------------~~~~~C~~f~~~ 53 (72)
T 2rhk_C 13 GEKTVVCKHWL-RGLCKKGDQCEFLHEYDM--------------------------------------TKMSECYFYSKF 53 (72)
T ss_dssp CCCCSBCHHHH-TTCCCCGGGSSSBCSCCT--------------------------------------TSCCBCHHHHHH
T ss_pred CCcCeeCHHHh-cCCCCCCCCCCCcccccc--------------------------------------ccCCcccccCCC
Confidence 45788997555 599999999999998643 124579999966
Q ss_pred ccCCCCCCCCCCCCcccc
Q 018874 241 GYCPFGNKCHFAHGIQEL 258 (349)
Q Consensus 241 G~C~~G~~C~FaHg~~EL 258 (349)
|.|.+ +.|+|.|...+.
T Consensus 54 G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 54 GECSN-KECPFLHIDPES 70 (72)
T ss_dssp SCCSB-TTCCSBCCCCC-
T ss_pred CCCCC-CCeeccCCCccc
Confidence 99999 999999987643
No 11
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=2.9e-10 Score=91.87 Aligned_cols=63 Identities=22% Similarity=0.518 Sum_probs=50.0
Q ss_pred cccccccccccCCCCCCC-CCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccc
Q 018874 87 FKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR 165 (349)
Q Consensus 87 yKTklC~~f~~G~C~~G~-~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~ 165 (349)
.|.++|++|+.|.|.+|+ .|+|+|..+++...+. ..++.
T Consensus 18 ~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~----------------------------------------~~~~~ 57 (98)
T 2e5s_A 18 DKLEVCREFQRGNCARGETDCRFAHPADSTMIDTS----------------------------------------DNTVT 57 (98)
T ss_dssp SEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTT----------------------------------------TCEEE
T ss_pred hhhhhhHHHhcCcCCCCCCCCCCcCCchhcccccc----------------------------------------CCccc
Confidence 477999999999999999 7999998866443211 13567
Q ss_pred cCccccccCCCCCCCCCCCCCCcccc
Q 018874 166 HCKKFYTEEGCPYGENCTFLHDEQSK 191 (349)
Q Consensus 166 ~C~~f~~~G~C~~G~~C~f~H~~~e~ 191 (349)
+|.. +..|.|.++ .|+|+|...++
T Consensus 58 vC~~-flkG~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 58 VCMD-YIKGRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp BCHH-HHHTCCCCT-TCCSBCCCHHH
T ss_pred cchh-hccCCCCCC-CcCccCChHHH
Confidence 9964 456999999 99999999775
No 12
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.4e-09 Score=87.88 Aligned_cols=65 Identities=28% Similarity=0.555 Sum_probs=51.2
Q ss_pred cccccCccccccCCCCCCC-CCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874 162 YKGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT 240 (349)
Q Consensus 162 yKt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~ 240 (349)
.|..+|+.|.. |.|.+|+ .|+|+|+...... .+...+..+|.+|+ .
T Consensus 18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~-------------------------------~~~~~~~~vC~~fl-k 64 (98)
T 2e5s_A 18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMI-------------------------------DTSDNTVTVCMDYI-K 64 (98)
T ss_dssp SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC-------------------------------CTTTCEEEBCHHHH-H
T ss_pred hhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc-------------------------------cccCCccccchhhc-c
Confidence 46679976665 9999999 7999999865311 11245667899998 7
Q ss_pred ccCCCCCCCCCCCCcccccc
Q 018874 241 GYCPFGNKCHFAHGIQELHR 260 (349)
Q Consensus 241 G~C~~G~~C~FaHg~~ELr~ 260 (349)
|.|.++ .|+|.|...+|+.
T Consensus 65 G~C~r~-~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 65 GRCMRE-KCKYFHPPAHLQA 83 (98)
T ss_dssp TCCCCT-TCCSBCCCHHHHH
T ss_pred CCCCCC-CcCccCChHHHHH
Confidence 999999 9999999888754
No 13
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=4.4e-09 Score=79.15 Aligned_cols=39 Identities=38% Similarity=0.800 Sum_probs=33.2
Q ss_pred cccCCCcccccccccccccccCCCCCCCCCCCCccccccC
Q 018874 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRF 261 (349)
Q Consensus 222 ~~~~p~~~Kt~lC~~f~~~G~C~~G~~C~FaHg~~ELr~~ 261 (349)
...+++..+++||+.| .+|.|+||++|+||||++||+.+
T Consensus 11 W~~R~P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~~ 49 (69)
T 2d9m_A 11 WQHRFPTGYFSICDRY-MNGTCPEGNSCKFAHGNAELHEW 49 (69)
T ss_dssp CCCCCCCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHHH
T ss_pred ccccCCCCCcccCccc-CcCCCCCCCccCCcCCHHHHhhH
Confidence 4455566678999999 58999999999999999999874
No 14
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.69 E-value=7.5e-09 Score=81.10 Aligned_cols=62 Identities=24% Similarity=0.557 Sum_probs=48.2
Q ss_pred ccccccccccccCCCCCCC-CCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccccccccccc
Q 018874 86 FFKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG 164 (349)
Q Consensus 86 ~yKTklC~~f~~G~C~~G~-~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt 164 (349)
+.|..+|++|+.|.|.+|+ .|+|+|....+.. ...+.
T Consensus 6 ~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~------------------------------------------~~~~~ 43 (83)
T 3d2n_A 6 WLTLEVCREFQRGTCSRPDTECKFAHPSKSCQV------------------------------------------ENGRV 43 (83)
T ss_dssp GGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCE------------------------------------------ETTEE
T ss_pred cccchhcHHHhcCCCCCCCCCCCCcCCCccccc------------------------------------------cCCce
Confidence 5788999999999999997 9999998643211 01245
Q ss_pred ccCccccccCCCCCCCCCCCCCCcccc
Q 018874 165 RHCKKFYTEEGCPYGENCTFLHDEQSK 191 (349)
Q Consensus 165 ~~C~~f~~~G~C~~G~~C~f~H~~~e~ 191 (349)
.+|..| ..|.|.++ .|+|.|....+
T Consensus 44 ~vC~df-lkG~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 44 IACFDS-LKGRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp ECCHHH-HTTCCCCS-SCSSCCCCHHH
T ss_pred eehhHh-hhccccCC-CcceeCChHHH
Confidence 689655 56999998 99999998765
No 15
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.49 E-value=5e-08 Score=76.39 Aligned_cols=63 Identities=22% Similarity=0.454 Sum_probs=48.9
Q ss_pred cccccCccccccCCCCCCC-CCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874 162 YKGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT 240 (349)
Q Consensus 162 yKt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~ 240 (349)
.+..+|+.|.. |.|.+|+ .|+|+|....... ...+..+|.+|+ .
T Consensus 7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~---------------------------------~~~~~~vC~dfl-k 51 (83)
T 3d2n_A 7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSCQV---------------------------------ENGRVIACFDSL-K 51 (83)
T ss_dssp GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE---------------------------------ETTEEECCHHHH-T
T ss_pred ccchhcHHHhc-CCCCCCCCCCCCcCCCccccc---------------------------------cCCceeehhHhh-h
Confidence 46678987766 9999997 9999999864210 012346799998 7
Q ss_pred ccCCCCCCCCCCCCcccccc
Q 018874 241 GYCPFGNKCHFAHGIQELHR 260 (349)
Q Consensus 241 G~C~~G~~C~FaHg~~ELr~ 260 (349)
|.|.++ .|+|.|....|..
T Consensus 52 G~C~r~-~C~y~H~~~~l~~ 70 (83)
T 3d2n_A 52 GRCSRE-NCKYLHPPPHLKT 70 (83)
T ss_dssp TCCCCS-SCSSCCCCHHHHH
T ss_pred ccccCC-CcceeCChHHHHH
Confidence 999999 9999999887654
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.49 E-value=4.1e-08 Score=77.86 Aligned_cols=62 Identities=24% Similarity=0.555 Sum_probs=47.9
Q ss_pred ccccccccccccCCCCCCC-CCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccccccccccc
Q 018874 86 FFKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG 164 (349)
Q Consensus 86 ~yKTklC~~f~~G~C~~G~-~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt 164 (349)
..+..+|+.|+.|.|.+|+ .|+|+|....+..- .-+.
T Consensus 14 ~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~------------------------------------------~~~~ 51 (89)
T 2rpp_A 14 WLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVE------------------------------------------NGRV 51 (89)
T ss_dssp SSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCB------------------------------------------TTBE
T ss_pred cchhhhchHHhcCCCCCCCCCCCCcCCCcccccc------------------------------------------CCce
Confidence 4577899999999999998 99999977442110 0145
Q ss_pred ccCccccccCCCCCCCCCCCCCCcccc
Q 018874 165 RHCKKFYTEEGCPYGENCTFLHDEQSK 191 (349)
Q Consensus 165 ~~C~~f~~~G~C~~G~~C~f~H~~~e~ 191 (349)
..|..| ..|.|.++ .|+|.|....+
T Consensus 52 ~vC~df-lkG~C~r~-~Cky~H~~~hl 76 (89)
T 2rpp_A 52 IACFDS-LKGRCSRE-NCKYLHPPTHL 76 (89)
T ss_dssp EBCHHH-HHTCCCCT-TCCSBCCCHHH
T ss_pred eeehhh-hhCcCCCC-CcceecCHHHH
Confidence 689655 56999987 99999998765
No 17
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=3.4e-08 Score=74.32 Aligned_cols=30 Identities=40% Similarity=0.812 Sum_probs=27.9
Q ss_pred ccccccccccCCCCCCCCCCCCCCccccCC
Q 018874 88 KTKLCCKFRNGTCPYITNCNFAHSIEELRR 117 (349)
Q Consensus 88 KTklC~~f~~G~C~~G~~C~FaH~~eelR~ 117 (349)
|++||.+|.+|.|+||+.|.|||+.+|||.
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence 459999999999999999999999999986
No 18
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.23 E-value=3.9e-07 Score=72.20 Aligned_cols=63 Identities=24% Similarity=0.481 Sum_probs=48.9
Q ss_pred cccccCccccccCCCCCCC-CCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874 162 YKGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT 240 (349)
Q Consensus 162 yKt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~ 240 (349)
.+..+|+.|.. |.|.+|+ .|+|+|.......+ .-+..+|.+|+ .
T Consensus 15 ~~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~---------------------------------~~~~~vC~dfl-k 59 (89)
T 2rpp_A 15 LTLEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE---------------------------------NGRVIACFDSL-K 59 (89)
T ss_dssp SEECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB---------------------------------TTBEEBCHHHH-H
T ss_pred chhhhchHHhc-CCCCCCCCCCCCcCCCcccccc---------------------------------CCceeeehhhh-h
Confidence 35668987766 9999998 99999988642110 12356799998 8
Q ss_pred ccCCCCCCCCCCCCcccccc
Q 018874 241 GYCPFGNKCHFAHGIQELHR 260 (349)
Q Consensus 241 G~C~~G~~C~FaHg~~ELr~ 260 (349)
|.|.++ .|+|.|....|..
T Consensus 60 G~C~r~-~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 60 GRCSRE-NCKYLHPPTHLKT 78 (89)
T ss_dssp TCCCCT-TCCSBCCCHHHHH
T ss_pred CcCCCC-CcceecCHHHHHH
Confidence 999998 9999999887654
No 19
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.94 E-value=5e-06 Score=75.91 Aligned_cols=103 Identities=24% Similarity=0.555 Sum_probs=61.3
Q ss_pred cccccccccCCCC----CCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccccccccccc
Q 018874 89 TKLCCKFRNGTCP----YITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG 164 (349)
Q Consensus 89 TklC~~f~~G~C~----~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt 164 (349)
.-||++|+-|.|. .+..|+|+|++... .|+ .+...+....- ..++.. ..--++.+..-.
T Consensus 89 LHLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~----~N~-~vLk~h~l~~L-----~~~eL~-------~LLLQnDp~lLP 151 (229)
T 3u9g_A 89 LHLCKLNLLGRCHYAQSQRNLCKYSHDVLSE----QNF-QILKNHELSGL-----NQEELA-------CLLVQSDPFFLP 151 (229)
T ss_dssp BCCCHHHHTTCCGGGTCCSSCCSSCSCTTCH----HHH-HHHHHTTCTTC-----CHHHHH-------HHHHTTCGGGSC
T ss_pred eeechhhhcCcCCcccCCCCCcccccccCch----hHH-HHHHHcCcccC-----CHhHhh-------heeccCCCccCc
Confidence 3789999999993 45789999988331 111 01111100000 000000 000001112234
Q ss_pred ccCccccc----cCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874 165 RHCKKFYT----EEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT 240 (349)
Q Consensus 165 ~~C~~f~~----~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~ 240 (349)
.+|.+| + .|.|.+++.|..+| +|.+|. +
T Consensus 152 eiC~~Y-kG~g~~g~C~~~~~C~kLH----------------------------------------------IC~~Fl-~ 183 (229)
T 3u9g_A 152 EICKSY-KGEGRKQTCGQPQPCERLH----------------------------------------------ICEHFT-R 183 (229)
T ss_dssp CBCTTC-CCSSSCCSCSSSSCCCSBC----------------------------------------------SCHHHH-T
T ss_pred hHHHHh-CCCCCCCcCCCCCCCccee----------------------------------------------ccchhh-c
Confidence 589877 5 26899999999887 388887 8
Q ss_pred ccCCCCCCCCCCCCccc
Q 018874 241 GYCPFGNKCHFAHGIQE 257 (349)
Q Consensus 241 G~C~~G~~C~FaHg~~E 257 (349)
|.|.| ..|.-.|...+
T Consensus 184 G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 184 GNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp TCCCC-SSCSSCCCTTS
T ss_pred CCcCC-CCccCccCccC
Confidence 99999 79999998743
No 20
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.38 E-value=0.00089 Score=46.80 Aligned_cols=28 Identities=36% Similarity=0.932 Sum_probs=25.5
Q ss_pred ccccccccccccccCCCCCCCCCCCCcc
Q 018874 229 WKTRICNKWELTGYCPFGNKCHFAHGIQ 256 (349)
Q Consensus 229 ~Kt~lC~~f~~~G~C~~G~~C~FaHg~~ 256 (349)
.++.+|..|...|+|++|..|.|.|..+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 4678999999999999999999999864
No 21
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=95.31 E-value=0.00064 Score=52.59 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=16.4
Q ss_pred ccccccccCCCCCCCCCCCCCCc
Q 018874 90 KLCCKFRNGTCPYITNCNFAHSI 112 (349)
Q Consensus 90 klC~~f~~G~C~~G~~C~FaH~~ 112 (349)
++|+++. .|.+ ..|.|.|..
T Consensus 10 e~CKf~~--~Ctn-~~C~f~Hp~ 29 (80)
T 2lhn_A 10 EQCKFGT--HCTN-KRCKYRHAR 29 (80)
Confidence 7798875 7888 899999954
No 22
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.11 E-value=0.0014 Score=45.88 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=26.2
Q ss_pred cccccCccccccCCCCCCCCCCCCCCccc
Q 018874 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQS 190 (349)
Q Consensus 162 yKt~~C~~f~~~G~C~~G~~C~f~H~~~e 190 (349)
.++.+|..|...|.|++|..|.++|+.+-
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 46779999999999999999999999863
No 23
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=93.04 E-value=0.07 Score=48.68 Aligned_cols=47 Identities=30% Similarity=0.705 Sum_probs=39.2
Q ss_pred cccccccccccc-----CCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccccccc
Q 018874 86 FFKTKLCCKFRN-----GTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQR 160 (349)
Q Consensus 86 ~yKTklC~~f~~-----G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~ 160 (349)
++--++|.+| . |.|.+++.|...|
T Consensus 148 ~lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH-------------------------------------------------- 176 (229)
T 3u9g_A 148 FFLPEICKSY-KGEGRKQTCGQPQPCERLH-------------------------------------------------- 176 (229)
T ss_dssp GGSCCBCTTC-CCSSSCCSCSSSSCCCSBC--------------------------------------------------
T ss_pred ccCchHHHHh-CCCCCCCcCCCCCCCccee--------------------------------------------------
Confidence 4456899999 6 4899999999999
Q ss_pred ccccccCccccccCCCCCCCCCCCCCCccc
Q 018874 161 SYKGRHCKKFYTEEGCPYGENCTFLHDEQS 190 (349)
Q Consensus 161 ~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e 190 (349)
+|. ++..|.|++ ..|.-+|+..+
T Consensus 177 -----IC~-~Fl~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 177 -----ICE-HFTRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp -----SCH-HHHTTCCCC-SSCSSCCCTTS
T ss_pred -----ccc-hhhcCCcCC-CCccCccCccC
Confidence 784 556699999 89999998854
No 24
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.96 E-value=0.049 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.717 Sum_probs=21.4
Q ss_pred ccccccccCCCCCCCCCCCCCCc
Q 018874 90 KLCCKFRNGTCPYITNCNFAHSI 112 (349)
Q Consensus 90 klC~~f~~G~C~~G~~C~FaH~~ 112 (349)
.+|.||..|.|.+|+.|.|.|.+
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSC
T ss_pred eEcCccccCCCCCCCCCCccCCC
Confidence 58999999999999999999964
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.32 E-value=0.068 Score=49.21 Aligned_cols=25 Identities=32% Similarity=0.790 Sum_probs=21.5
Q ss_pred cccccccccccCCCCCCCCCCCCccc
Q 018874 232 RICNKWELTGYCPFGNKCHFAHGIQE 257 (349)
Q Consensus 232 ~lC~~f~~~G~C~~G~~C~FaHg~~E 257 (349)
.+|.||. .|.|.+|+.|.|.|....
T Consensus 71 ~~C~ffa-kG~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 71 FFCLFFA-KGMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp SBCHHHH-TTCCSCGGGCSSBBSCCC
T ss_pred eEcCccc-cCCCCCCCCCCccCCCCC
Confidence 3799998 699999999999997543
No 26
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=85.83 E-value=0.16 Score=39.13 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=14.9
Q ss_pred ccCccccccCCCCCCCCCCCCCCcc
Q 018874 165 RHCKKFYTEEGCPYGENCTFLHDEQ 189 (349)
Q Consensus 165 ~~C~~f~~~G~C~~G~~C~f~H~~~ 189 (349)
..|+++ -.|.. ..|.|.|...
T Consensus 10 e~CKf~---~~Ctn-~~C~f~Hp~~ 30 (80)
T 2lhn_A 10 EQCKFG---THCTN-KRCKYRHARS 30 (80)
Confidence 478433 36887 8999999653
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=60.22 E-value=1.8 Score=39.29 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=0.0
Q ss_pred cccccccccccccCCCCCCCCCCCCccc
Q 018874 230 KTRICNKWELTGYCPFGNKCHFAHGIQE 257 (349)
Q Consensus 230 Kt~lC~~f~~~G~C~~G~~C~FaHg~~E 257 (349)
+..+|+|-. .|.||.+|+|.|.+..
T Consensus 191 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYGR---KCTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCCCc---ccccCCcceecCCccC
Confidence 456799633 7999999999999864
No 28
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=34.32 E-value=4.6 Score=31.17 Aligned_cols=11 Identities=45% Similarity=1.096 Sum_probs=7.4
Q ss_pred ccccccccccC
Q 018874 338 SRIYGDWIDDI 348 (349)
Q Consensus 338 ~~~~~~~~~~~ 348 (349)
--||.||||..
T Consensus 68 iDVYs~WiDac 78 (85)
T 1wii_A 68 VDVYSDWIDAC 78 (85)
T ss_dssp THHHHHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 35777777754
No 29
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=24.67 E-value=16 Score=33.13 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=0.0
Q ss_pred ccccccccccCCCCCCCCCCCCCCc
Q 018874 88 KTKLCCKFRNGTCPYITNCNFAHSI 112 (349)
Q Consensus 88 KTklC~~f~~G~C~~G~~C~FaH~~ 112 (349)
+..+|.+= .+|.||..|+|.|..
T Consensus 191 ~~~~~~~~--~~~~~~~~~~~~~~~ 213 (223)
T 3v33_A 191 RKQPCPYG--RKCTYGIKCRFFHPE 213 (223)
T ss_dssp -------------------------
T ss_pred CCCCCCCC--cccccCCcceecCCc
Confidence 44778884 489999999999965
Done!