Your job contains 1 sequence.
>018875
MGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR
GFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE
DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI
KKAEPKKSSNPPPPPSYASNSRGRSFNDGFGGFGSSYGGFDGGFGPGPYRTPAGLGGRLG
GGYGYGSSGGEYGGGYGGFGGSSLGGYRGEPSLGYSGRFGPYGGGFGSSYGGSGLGGYGR
GGEGYGSYGGSGYGGGYDSGPGTSYGAGGGLYGRGGYSGSSRYHPYARS
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018875
(349 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 812 6.6e-81 1
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 661 6.7e-65 1
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 500 7.7e-48 1
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 247 2.0e-40 2
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 387 7.2e-36 1
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 379 5.1e-35 1
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 368 7.8e-34 1
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 365 1.5e-33 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 359 6.7e-33 1
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 358 8.5e-33 1
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 357 1.1e-32 1
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 352 3.7e-32 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 350 6.0e-32 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 350 6.0e-32 1
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 351 2.2e-31 1
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 193 2.4e-31 2
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 345 5.6e-31 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 336 1.8e-30 1
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 335 2.3e-30 1
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 330 7.9e-30 1
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 330 7.9e-30 1
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 330 7.9e-30 1
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 329 1.0e-29 1
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 329 1.0e-29 1
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 329 1.0e-29 1
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 328 1.3e-29 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 327 1.6e-29 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 327 1.6e-29 1
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 327 1.6e-29 1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 325 2.7e-29 1
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 324 3.4e-29 1
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 323 4.4e-29 1
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 323 4.4e-29 1
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 320 9.1e-29 1
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 318 1.5e-28 1
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 318 1.5e-28 1
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 318 1.5e-28 1
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 317 1.9e-28 1
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 315 3.1e-28 1
DICTYBASE|DDB_G0292422 - symbol:DDB_G0292422 "RNA-binding... 322 4.2e-28 1
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 309 1.3e-27 1
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 308 1.7e-27 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 306 2.8e-27 1
ZFIN|ZDB-GENE-030131-2249 - symbol:hnrnpa0a "heterogeneou... 305 3.5e-27 1
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 301 9.4e-27 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 300 1.2e-26 1
ZFIN|ZDB-GENE-030912-14 - symbol:hnrnpa1 "heterogeneous n... 298 1.9e-26 1
FB|FBgn0004903 - symbol:Rb97D "Ribonuclear protein at 97D... 300 2.3e-26 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 297 2.5e-26 1
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 297 2.5e-26 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 297 2.5e-26 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 297 2.5e-26 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 297 2.5e-26 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 297 2.5e-26 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 297 2.5e-26 1
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 297 2.5e-26 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 297 2.5e-26 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 297 2.5e-26 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 297 2.5e-26 1
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 297 2.5e-26 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 297 2.5e-26 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 297 2.5e-26 1
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 297 2.5e-26 1
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 296 3.2e-26 1
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 295 4.0e-26 1
UNIPROTKB|F1N4K3 - symbol:F1N4K3 "Uncharacterized protein... 294 5.2e-26 1
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 293 6.6e-26 1
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 293 6.6e-26 1
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 293 6.6e-26 1
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 293 6.6e-26 1
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 293 6.6e-26 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 293 6.6e-26 1
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 293 6.6e-26 1
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 293 6.6e-26 1
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 293 6.6e-26 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 293 6.6e-26 1
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 293 6.6e-26 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 293 6.6e-26 1
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 292 8.4e-26 1
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 291 1.1e-25 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 291 1.1e-25 1
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 290 1.4e-25 1
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein... 289 1.8e-25 1
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 288 2.2e-25 1
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 288 2.2e-25 1
UNIPROTKB|F1N3T3 - symbol:F1N3T3 "Uncharacterized protein... 287 2.9e-25 1
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 287 2.9e-25 1
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 287 2.9e-25 1
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 287 2.9e-25 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 287 2.9e-25 1
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 287 2.9e-25 1
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 287 2.9e-25 1
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 287 2.9e-25 1
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 287 2.9e-25 1
UNIPROTKB|Q9TTV2 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 286 3.6e-25 1
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 285 4.6e-25 1
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 285 4.6e-25 1
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 284 5.9e-25 1
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 283 7.6e-25 1
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 283 7.6e-25 1
WARNING: Descriptions of 1312 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 154/182 (84%), Positives = 171/182 (93%)
Query: 1 MGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60
MGS+S++DN +GDGASPGKIFIGGL KDTT FNKHFGKYG+ITDSVIM+DR+TGQPR
Sbjct: 1 MGSRSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 61 GFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSV 118
GFGFIT+ADPSVVDKVIEDTH+INGKQVEIKRTIPKG+G QSKD KTKKIFVGGIPS+V
Sbjct: 61 GFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTV 120
Query: 119 SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178
+EDELK+FF+KYG V+EHQ+IRDHETNRSRGFGFVIFDSEEVVDE+LSKGNMIDMA TQV
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQV 180
Query: 179 EI 180
EI
Sbjct: 181 EI 182
Score = 154 (59.3 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GG+P T F KYG++ + +++D T + RGFGF+ + VVD+++
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 80 THIIN--GKQVEIKRTIPKGS 98
++I+ QVEIK+ PK S
Sbjct: 170 GNMIDMADTQVEIKKAEPKKS 190
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 124/172 (72%), Positives = 147/172 (85%)
Query: 10 PHTGDGA-SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA 68
PH+G G S GKIF+GGL ++TT A F KHFGKYG+ITDSVIMKDR TGQPRGFGF+TYA
Sbjct: 32 PHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYA 91
Query: 69 DPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128
D SVVDKVI+D HII GKQVEIKRTIP+GS S DFKTKKIFVGGIPSSV +DE K FF
Sbjct: 92 DSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFM 151
Query: 129 KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
++G++ EHQI+RDH T RSRGFGFV ++SE++VD +L+KGN I+++GTQVEI
Sbjct: 152 QFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEI 203
Score = 162 (62.1 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
KIF+GG+P F + F ++G++ + IM+D TG+ RGFGF+TY +VD ++ +
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 79 DTHI-INGKQVEIKRTIPK 96
I ++G QVEIK+ PK
Sbjct: 191 GNRIELSGTQVEIKKAEPK 209
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 92/182 (50%), Positives = 131/182 (71%)
Query: 4 KSKSDNPHTGDG-ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
K D+ H+ +SPGK+F+GG+ +TT TF +FGK+G++ DSVIM DR TG PRGF
Sbjct: 50 KHSVDHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGF 109
Query: 63 GFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFK----TKKIFVGGIPSSV 118
GF+T+AD +V +KV+E+ H+I+ ++V++KRT+P+G + D K T+KIFVGG+P +
Sbjct: 110 GFVTFADSAVAEKVLEEDHVIDDRKVDLKRTLPRGD-KDTDIKAVSKTRKIFVGGLPPLL 168
Query: 119 SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178
EDELKN+F YG ++EHQI+ DH T RSRGFGFV F +E+ VD + S G + ++ QV
Sbjct: 169 EEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQV 228
Query: 179 EI 180
EI
Sbjct: 229 EI 230
Score = 185 (70.2 bits), Expect = 6.5e-14, P = 6.5e-14
Identities = 38/89 (42%), Positives = 52/89 (58%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGLP +F YGDI + IM D +TG+ RGFGF+T+ VD++ D
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 80 --THIINGKQVEIKRTIPKGSGQSKDFKT 106
H + KQVEIKR PK +G+ F++
Sbjct: 218 GKVHELGDKQVEIKRAEPKRTGRDNSFRS 246
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 88 VEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRS 147
+++K ++ S K+FVGG+ + + N+F K+G+V++ I+ D T
Sbjct: 47 IQMKHSVDHRHSSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNP 106
Query: 148 RGFGFVIFDSEEVVDEMLSKGNMID 172
RGFGFV F V +++L + ++ID
Sbjct: 107 RGFGFVTFADSAVAEKVLEEDHVID 131
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 247 (92.0 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
Identities = 44/82 (53%), Positives = 61/82 (74%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGG+ DT ++FGKYGD+ ++VIM+DR TG+ RGFGFI +ADPSV ++VI
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIM 74
Query: 79 DTHIINGKQVEIKRTIPKGSGQ 100
D HII+G+ VE K+ +P+ Q
Sbjct: 75 DKHIIDGRTVEAKKAVPRDDQQ 96
Score = 220 (82.5 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 49/120 (40%), Positives = 66/120 (55%)
Query: 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSV 72
G GA KIF+GGLP T A F +F ++G I D V+M D T +PRGFGFIT+
Sbjct: 116 GGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEES 175
Query: 73 VDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGG----IPSSVSEDELKNFF 127
VD V+ T H +NGK VE+KR +PK + ++ I G +P+ S + N F
Sbjct: 176 VDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSF 235
Score = 210 (79.0 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
Identities = 40/86 (46%), Positives = 56/86 (65%)
Query: 95 PKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVI 154
P G +TKKIFVGG+PSS++E E KN+F ++G + + ++ DH T R RGFGF+
Sbjct: 110 PSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 169
Query: 155 FDSEEVVDEMLSKGNMIDMAGTQVEI 180
FDSEE VD +L K ++ G VE+
Sbjct: 170 FDSEESVDMVLHK-TFHELNGKMVEV 194
Score = 152 (58.6 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GGI E+ L+ +F KYG ++E I+RD T R+RGFGF++F V + ++
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 168 GNMIDMAGTQVE 179
++ID G VE
Sbjct: 76 KHIID--GRTVE 85
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 77/178 (43%), Positives = 112/178 (62%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGG+ DT +F YGD+ ++VIM+DR TG+ RGFGFI +ADP V ++VI
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 79 DTHIINGKQVEIKRTIPKGSGQ----------------SKDFKTKKIFVGGIPSSVSEDE 122
D HII+G+ VE K+ +P+ Q +TKKIFVGG+PSS++E+E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
KN+F ++G + + ++ DH T R RGFGF+ FDS++ VD +L K ++ G VE+
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK-TFHELNGKLVEV 182
Score = 216 (81.1 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 42/89 (47%), Positives = 55/89 (61%)
Query: 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA 68
+P G G KIF+GGLP T F +F ++G I D V+M D T +PRGFGFIT+
Sbjct: 100 SPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 159
Query: 69 DPSVVDKVIEDT-HIINGKQVEIKRTIPK 96
VD+V+ T H +NGK VE+KR +PK
Sbjct: 160 SDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 72/178 (40%), Positives = 119/178 (66%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GG+ +T +HF YG+++ +++M+D+ TG+PRGFGF+ ++DPSV+D+V++
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 79 DTHIINGKQVEIKRTIPKG----SGQSKDF------------KTKKIFVGGIPSSVSEDE 122
+ H I+ ++V++KR + + SG++ + KTKKIFVGG+P +++++E
Sbjct: 66 EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125
Query: 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ +F YG V + I+ D TNR RGFGFV FDSE+ VD +L K D++G QVE+
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHDLSGKQVEV 182
Score = 202 (76.2 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 38/78 (48%), Positives = 52/78 (66%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGLP T F ++F YG +TD IM D+ T +PRGFGF+++ VD V+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 80 T-HIINGKQVEIKRTIPK 96
T H ++GKQVE+KR +PK
Sbjct: 171 TFHDLSGKQVEVKRALPK 188
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 368 (134.6 bits), Expect = 7.8e-34, P = 7.8e-34
Identities = 74/161 (45%), Positives = 107/161 (66%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT ++FGKYG +TD IMKD TG+ RGFGF+++ PS VD+V++
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 80 THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139
HI++GK ++ KR IP+ +D KT KIFVGGI V E + FFS++G +++ Q++
Sbjct: 220 QHILDGKVIDPKRAIPR---DEQD-KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLM 275
Query: 140 RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
D +T +SRGFGFV +DS + VD + + ID ++EI
Sbjct: 276 LDKDTGQSRGFGFVTYDSADAVDRVC-QNKFIDFKDRKIEI 315
Score = 170 (64.9 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GKIF+GG+ D F + F ++G I D+ +M D+ TGQ RGFGF+TY VD+V +
Sbjct: 243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 302
Query: 79 DTHI-INGKQVEIKRTIPK 96
+ I +++EIKR P+
Sbjct: 303 NKFIDFKDRKIEIKRAEPR 321
Score = 155 (59.6 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 87 QVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNR 146
Q ++ +T + S ++ K+F+GG+ +ED L+ +F KYG V + +I++D T R
Sbjct: 139 QQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGR 198
Query: 147 SRGFGFVIFDSEEVVDEMLSKGNMID 172
SRGFGF+ F+ VDE++ +++D
Sbjct: 199 SRGFGFLSFEKPSSVDEVVKTQHILD 224
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 74/166 (44%), Positives = 104/166 (62%)
Query: 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVD 74
G K FIGGL DTT HF KYG+I D IMKD TG+ RGFGF+T+ D VD
Sbjct: 158 GGPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVD 217
Query: 75 KVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL 134
+++D H+++GK ++ KR I K + K KIFVGGI V+E+E NFFS++GK++
Sbjct: 218 ALLKDRHVLDGKLIDPKRAISKEDQE----KVGKIFVGGIDPMVTEEEFDNFFSQFGKII 273
Query: 135 EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ Q++ D +T RSRGFGFV +DS VD++ + + G +E+
Sbjct: 274 DCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVN-KYLTLKGKAMEV 318
Score = 188 (71.2 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D GKIF+GG+ T F+ F ++G I D +M D+ TG+ RGFGF+TY P+ V
Sbjct: 241 DQEKVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAV 300
Query: 74 DKVIEDTHI-INGKQVEIKRTIPKG 97
DKV + ++ + GK +E+KR P+G
Sbjct: 301 DKVCVNKYLTLKGKAMEVKRAAPRG 325
Score = 152 (58.6 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 98 SGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS 157
S +S ++K F+GG+ +E+ L + F KYG ++++ I++D T RSRGFGF+ F+
Sbjct: 153 SAESAGGPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFED 212
Query: 158 EEVVDEMLSKGNMID 172
+ VD +L +++D
Sbjct: 213 AKSVDALLKDRHVLD 227
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 69/165 (41%), Positives = 114/165 (69%)
Query: 1 MGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60
+G S S+ P+ PGK+FIGGL T+ + +FG+YGDI+++++MKD T + R
Sbjct: 16 LGPCSPSEVPN-----DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSR 70
Query: 61 GFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVS 119
GFGF+T++DP+ VDKV+ + TH ++GK+V+ K P+ + +TKKIFVGG+ + +
Sbjct: 71 GFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTT 130
Query: 120 EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
+++K++F ++G + + ++ D +TNR RGFGFV F SE+VVD++
Sbjct: 131 LEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKV 175
Score = 175 (66.7 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 36/78 (46%), Positives = 48/78 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL TT +F ++G I D+++M D+ T + RGFGF+T+ VVDKV E
Sbjct: 119 KIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEI 178
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 179 HFHEINNKMVECKKAQPK 196
Score = 149 (57.5 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ S + L+++F +YG + E +++D T RSRGFGFV F VD++L++
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 168 GNMIDMAGTQVE 179
G ++ G +V+
Sbjct: 90 GTH-ELDGKKVD 100
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 74/178 (41%), Positives = 114/178 (64%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGG+ DT ++F +G++ +M+++ TG+PRGFGF+ ++DP+V+D+V++
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
Query: 79 DTHIINGKQVEIKRTI------PKG-SGQ---SKDF------KTKKIFVGGIPSSVSEDE 122
D H I+ + V++KR + P G SG S++F +TKKIFVGG+P +++ DE
Sbjct: 66 DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ +F YG V + I+ D T R RGFGFV FDSE+ VD +L K D+ G QVE+
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK-TFHDLNGKQVEV 182
Score = 209 (78.6 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
G+ + S N +G KIF+GGLP T F +F YG ++D+VIM D+ T +PRG
Sbjct: 93 GTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRG 152
Query: 62 FGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 96
FGF+++ VD V+ T H +NGKQVE+KR +PK
Sbjct: 153 FGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPK 188
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 70/176 (39%), Positives = 110/176 (62%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGG+ DT ++F +G++ ++VI+KDR TG+ RGFGF+ +ADP+V + VI
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVIT 65
Query: 79 DTHIINGKQVEIKRTIPKGS------GQSKDF--------KTKKIFVGGIPSSVSEDELK 124
+ H I+G+ VE K+ +P+ S +T+KIFVGG+PSSV+E + K
Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 125 NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+F ++G + ++ DH T R RGFGF+ +DSEE V+++L K ++ G VE+
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK-TFHELNGKMVEV 180
Score = 215 (80.7 bits), Expect = 7.4e-17, P = 7.4e-17
Identities = 46/100 (46%), Positives = 61/100 (61%)
Query: 1 MGSKSKSDNPHTGDGASPG---KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTG 57
M ++S S + G PG KIF+GGLP T + F +F ++G TD V+M D T
Sbjct: 88 MVNRSNSSSIQ-GSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQ 146
Query: 58 QPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 96
+PRGFGFITY V+KV+ T H +NGK VE+KR +PK
Sbjct: 147 RPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 67/163 (41%), Positives = 112/163 (68%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL +TT +++F ++GDI D V+MK+ +G+ RGFGF+T+ADP+ V+ V++
Sbjct: 7 GKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ 66
Query: 79 D-THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
+ H ++G+ ++ K P+ + K K+F+GG+PS+V+E +L+ FF++YGKV E
Sbjct: 67 NGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVV 126
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
I+ D E +SRGFGF+ F+ E V+ + ++ I++ G QVEI
Sbjct: 127 IMYDQEKKKSRGFGFLSFEEESSVEHVTNE-RYINLNGKQVEI 168
Score = 186 (70.5 bits), Expect = 7.2e-14, P = 7.2e-14
Identities = 46/114 (40%), Positives = 66/114 (57%)
Query: 6 KSDNPHTGDGASPG---KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
K NP T G K+F+GGLP + T F +YG +T+ VIM D+ + RGF
Sbjct: 80 KPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGF 139
Query: 63 GFITYADPSVVDKVIEDTHI-INGKQVEIKRTIPK-GSG-QSKDFKTKKIFVGG 113
GF+++ + S V+ V + +I +NGKQVEIK+ P+ GSG Q+ + T VGG
Sbjct: 140 GFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNST----VGG 189
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 67/161 (41%), Positives = 105/161 (65%)
Query: 9 NPHTGDGA----SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
N + DG+ PGK+FIGGL TT +FG++G++ + ++M+D T + RGFGF
Sbjct: 31 NADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGF 90
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
IT+ DPS VDKV+ + H ++GK+++ K PK + KTKK+F+GG+ ++ + +++
Sbjct: 91 ITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDM 150
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
K +F YGKV + ++ D T R RGFGFV FDS+EV D++
Sbjct: 151 KQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKV 191
Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 35/78 (44%), Positives = 48/78 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
K+FIGGL +T ++F YG + D+++M D+ T + RGFGF+T+ V DKV E
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEI 194
Query: 79 DTHIINGKQVEIKRTIPK 96
H INGK VE K+ PK
Sbjct: 195 HFHEINGKMVECKKAQPK 212
Score = 132 (51.5 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD 156
GS S+D K+F+GG+ + + L+++F ++G+V E ++RD T R+RGFGF+ F
Sbjct: 37 GSHGSQD--PGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFV 94
Query: 157 SEEVVDEMLS 166
VD++L+
Sbjct: 95 DPSSVDKVLN 104
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 69/184 (37%), Positives = 115/184 (62%)
Query: 2 GSKSKSDNPHTGDGASP-----GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT 56
GS + N + SP GK+FIGGL +TT + +F ++G++ D +M+D T
Sbjct: 141 GSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTT 200
Query: 57 GQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPS 116
G+ RGFGF+T+ +P V++V+ H ++GK ++ KR IP+ + KT K+FVGG+P
Sbjct: 201 GRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQE----KTAKMFVGGVPG 256
Query: 117 SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176
+E+E +NFF+++G+VL+ ++ D +T R RGFGFV +++E V+ +S+ I + G
Sbjct: 257 DCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQP-YITIHGK 315
Query: 177 QVEI 180
VE+
Sbjct: 316 PVEV 319
Score = 198 (74.8 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GG+P D T F F ++G + D+ +M D+ TG+PRGFGF+TY + S V+ +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 80 THI-INGKQVEIKRTIPKGS 98
+I I+GK VE+KR PK S
Sbjct: 308 PYITIHGKPVEVKRATPKAS 327
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 351 (128.6 bits), Expect = 2.2e-31, P = 2.2e-31
Identities = 68/164 (41%), Positives = 106/164 (64%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
G + S + +G +PGK+F+GGL T+ ++F +G +TD +IMKD T + RG
Sbjct: 186 GRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRG 245
Query: 62 FGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120
FGFIT+ +P V+KV++ H ++GK+++ K PK + + KTKKIFVGG+ S
Sbjct: 246 FGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPRQAN-KTKKIFVGGVSQDTSA 304
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
+E+K +FS++G V E ++ D +T R RGFGFV F++E+VVD +
Sbjct: 305 EEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRV 348
Score = 167 (63.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 34/95 (35%), Positives = 58/95 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GG+ +DT+ +F ++G + ++V++ D+ T + RGFGF+T+ + VVD+V E
Sbjct: 292 KIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEI 351
Query: 79 DTHIINGKQVEIKRTIPKGS-GQSKDFKTKKIFVG 112
H I K+VE K+ PK + + K+I +G
Sbjct: 352 HFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLG 386
Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 92 RTIPKGSGQS-KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF 150
R+ P SG S D K+FVGG+ S D+LK +F+ +G V + I++D T RSRGF
Sbjct: 187 RSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGF 246
Query: 151 GFVIFDSEEVVDEML 165
GF+ F V+++L
Sbjct: 247 GFITFQEPCTVEKVL 261
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 193 (73.0 bits), Expect = 7.7e-15, P = 7.7e-15
Identities = 46/120 (38%), Positives = 66/120 (55%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL +TT F +F ++G TD V+M D T +PRGFGF+TY V+ V++
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSK---YGKVLE 135
H ++ K+VE+KR IPK QS + I P S S + + + YG VL+
Sbjct: 181 NFHELSDKRVEVKRAIPKEGIQSNNGNAVNI-----PPSYSSFQATPYVPEQNGYGMVLQ 235
Score = 191 (72.3 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 31/77 (40%), Positives = 54/77 (70%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GG+ K+T+ ++F +YG + ++V+ K++ TG+PRGFGF+ +A+ V K + D
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 80 THIINGKQVEIKRTIPK 96
TH I GK V++++ I K
Sbjct: 67 THFILGKPVDVRKAIRK 83
Score = 178 (67.7 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 32/76 (42%), Positives = 55/76 (72%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
+TKKIFVGG+ S+ +E+E K++F ++G+ + ++ D TNR RGFGFV +DSE+ V E+
Sbjct: 118 RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSV-EV 176
Query: 165 LSKGNMIDMAGTQVEI 180
+ + N +++ +VE+
Sbjct: 177 VMQSNFHELSDKRVEV 192
Score = 139 (54.0 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSE-EVV 161
D+ K+FVGGI SE+ LK +FS+YG VLE + ++ T + RGFGFV F ++ +VV
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 345 (126.5 bits), Expect = 5.6e-31, P = 5.6e-31
Identities = 64/162 (39%), Positives = 105/162 (64%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGGL +TT + ++F ++G++ + +M+D TG+ RGFGF+T+ DP V+ V+
Sbjct: 110 GKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMV 169
Query: 79 DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H ++GK ++ KR IP+ + KT KIFVGG+ +E + K FF ++G+V++ +
Sbjct: 170 KEHYLDGKIIDPKRAIPRDEQE----KTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATL 225
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D +T R RGFGFV FDSE V+ LS+ +++ G +E+
Sbjct: 226 MIDKDTGRPRGFGFVTFDSEAAVEAALSRP--LEILGKTIEV 265
Score = 166 (63.5 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GG+ ++ T F + F ++G + D+ +M D+ TG+PRGFGF+T+ + V+ +
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 254
Query: 80 THIINGKQVEIKRTIPKGS 98
I GK +E+K+ P+G+
Sbjct: 255 PLEILGKTIEVKKAQPRGN 273
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 67/162 (41%), Positives = 102/162 (62%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 115
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H ++G+ ++ K+ P+ S + K+ KIFVGGIP + E EL+ +F K+G V E +
Sbjct: 116 RPHTLDGRNIDPKQKGPR----SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVM 171
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+
Sbjct: 172 IYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEV 212
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 36/94 (38%), Positives = 55/94 (58%)
Query: 6 KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFI 65
K P + D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFI
Sbjct: 128 KQKGPRS-DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 186
Query: 66 TYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGS 98
T+ D VD+ + H I GK+VE+KR P+ S
Sbjct: 187 TFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 220
Score = 144 (55.7 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 28/67 (41%), Positives = 48/67 (71%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML- 165
+K+FVGG+ S +++ L+++FS+YG+V++ I++D TN+SRGFGFV F V +L
Sbjct: 55 RKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 114
Query: 166 SKGNMID 172
S+ + +D
Sbjct: 115 SRPHTLD 121
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 71/180 (39%), Positives = 109/180 (60%)
Query: 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVD 74
G GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V
Sbjct: 7 GDEIGKLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVR 66
Query: 75 KVIEDT-HIINGKQVEIKRTIPKG------------SGQSKDF-KTKKIFVGGIPSSVSE 120
V++ H ++G+ ++ K P+G G D K+KKIFVGGIP + E
Sbjct: 67 TVLDTKPHNLDGRNIDPKPCTPRGMQPEKTRTKDGWKGSKSDSNKSKKIFVGGIPHNCGE 126
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
EL+++F+++G V E +I D E R RGFGF+ F++E+ VD+ ++ + D+ G +VE+
Sbjct: 127 AELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNM-HFHDIMGKKVEV 185
Score = 157 (60.3 bits), Expect = 9.9e-11, P = 9.9e-11
Identities = 32/86 (37%), Positives = 50/86 (58%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D KIF+GG+P + A +F ++G +T+ V++ D +PRGFGFIT+ V
Sbjct: 108 DSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSV 167
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+K+ P+ S
Sbjct: 168 DQAVNMHFHDIMGKKVEVKKAEPRDS 193
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 72/177 (40%), Positives = 105/177 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 DT-HIINGKQVEIK----------RTIPKGSGQ----SKDFKTKKIFVGGIPSSVSEDEL 123
H ++G+ ++ K RT PK Q S + K+ KIFVGGIP + E EL
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ +F K+G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEV 185
Score = 172 (65.6 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDS 193
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 72/177 (40%), Positives = 105/177 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 DT-HIINGKQVEIK----------RTIPKGSGQ----SKDFKTKKIFVGGIPSSVSEDEL 123
H ++G+ ++ K RT PK Q S + K+ KIFVGGIP + E EL
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ +F K+G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEV 185
Score = 172 (65.6 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDS 193
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 72/177 (40%), Positives = 105/177 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 DT-HIINGKQVEIK----------RTIPKGSGQ----SKDFKTKKIFVGGIPSSVSEDEL 123
H ++G+ ++ K RT PK Q S + K+ KIFVGGIP + E EL
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ +F K+G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEV 185
Score = 172 (65.6 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDS 193
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 72/177 (40%), Positives = 104/177 (58%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 DT-HIINGKQVEIK----------RTIPKGSGQ----SKDFKTKKIFVGGIPSSVSEDEL 123
H ++G+ ++ K RT PK Q S K+ KIFVGGIP + E EL
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ +F K+G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEV 185
Score = 172 (65.6 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 108 DSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDS 193
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 70/176 (39%), Positives = 104/176 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 DT-HIINGKQVEIKRTIPKG---------SG----QSKDFKTKKIFVGGIPSSVSEDELK 124
H ++G+ ++ K P+G G +S K+ KIFVGGIP + E EL+
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWKGPRSDSSKSNKIFVGGIPHNCGETELR 129
Query: 125 NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+F K+G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+
Sbjct: 130 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEV 184
Score = 172 (65.6 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 107 DSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 166
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 167 DQAVNMHFHDIMGKKVEVKRAEPRDS 192
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 72/177 (40%), Positives = 104/177 (58%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 DT-HIINGKQVEIK----------RTIPKGSGQ----SKDFKTKKIFVGGIPSSVSEDEL 123
H ++G+ ++ K RT PK Q S K+ KIFVGGIP + E EL
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ +F K+G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEV 185
Score = 172 (65.6 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 108 DSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDS 193
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 72/182 (39%), Positives = 108/182 (59%)
Query: 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVD 74
G GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V
Sbjct: 6 GDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 75 KVIEDT-HIINGKQVEIKRTIPKG---------SG-QSKDFKTK-----KIFVGGIPSSV 118
V+ H ++G+ ++ K P+G G Q K+ +T+ KIFVGGIP +
Sbjct: 66 TVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNC 125
Query: 119 SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178
E ELK +F+++G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +V
Sbjct: 126 GETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKV 184
Query: 179 EI 180
E+
Sbjct: 185 EV 186
Score = 170 (64.9 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 35/90 (38%), Positives = 54/90 (60%)
Query: 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD 69
P T + S KIF+GG+P + ++F ++G +T+ V++ D +PRGFGFIT+ D
Sbjct: 106 PRTENSRS-NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFED 164
Query: 70 PSVVDKVIE-DTHIINGKQVEIKRTIPKGS 98
VD+ + H I GK+VE+KR P+ S
Sbjct: 165 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 194
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 64/163 (39%), Positives = 107/163 (65%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
S S +D+ H PGK+FIGGL T+ + +F K+G+I + ++M+D T + RGF
Sbjct: 10 SGSANDSQH-----DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF 64
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSED 121
GF+T+ADP+ VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ ++ +
Sbjct: 65 GFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVE 124
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
++K +F ++GKV + ++ D TNR RGFGFV F++E+VV+++
Sbjct: 125 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV 167
Score = 168 (64.2 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +T ++F ++G + D+++M D+ T + RGFGF+T+ + VV+KV E
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 171 HFHEINNKMVECKKAQPK 188
Score = 152 (58.6 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD 156
GS K+F+GG+ S D L+++FSK+G++ E ++RD T RSRGFGFV F
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 157 SEEVVDEMLSK 167
VD++L +
Sbjct: 71 DPASVDKVLGQ 81
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 64/163 (39%), Positives = 107/163 (65%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
S S +D+ H PGK+FIGGL T+ + +F K+G+I + ++M+D T + RGF
Sbjct: 10 SGSANDSQH-----DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF 64
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSED 121
GF+T+ADP+ VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ ++ +
Sbjct: 65 GFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVE 124
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
++K +F ++GKV + ++ D TNR RGFGFV F++E+VV+++
Sbjct: 125 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV 167
Score = 168 (64.2 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +T ++F ++G + D+++M D+ T + RGFGF+T+ + VV+KV E
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 171 HFHEINNKMVECKKAQPK 188
Score = 152 (58.6 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD 156
GS K+F+GG+ S D L+++FSK+G++ E ++RD T RSRGFGFV F
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 157 SEEVVDEMLSK 167
VD++L +
Sbjct: 71 DPASVDKVLGQ 81
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 63/164 (38%), Positives = 108/164 (65%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
GS++ S +P+ PGK+FIGGL T+ + +F K+G+I + ++M+D T + RG
Sbjct: 5 GSQATSGSPNDSQH-DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 63
Query: 62 FGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120
FGF+T+AD + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ ++
Sbjct: 64 FGFVTFADAASVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 123
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
+++K +F ++GKV + ++ D TNR RGFGFV F++E+VV+++
Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV 167
Score = 168 (64.2 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +T ++F ++G + D+++M D+ T + RGFGF+T+ + VV+KV E
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 171 HFHEINNKMVECKKAQPK 188
Score = 151 (58.2 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD 156
GS K+F+GG+ S D L+++FSK+G++ E ++RD T RSRGFGFV F
Sbjct: 11 GSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 157 SEEVVDEMLSK 167
VD++L++
Sbjct: 71 DAASVDKVLAQ 81
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 68/163 (41%), Positives = 100/163 (61%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ KG +S + K+ KIFVGGIP + E EL+ +F K+G V E
Sbjct: 70 SRPHTLDGRN-------QKGP-RSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVV 121
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+
Sbjct: 122 MIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEV 163
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 86 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 145
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 146 DQAVNMHFHDIMGKKVEVKRAEPRDS 171
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/176 (40%), Positives = 104/176 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 80 T-HIINGKQVEIK----------RTIPKGSGQ----SKDFKTKKIFVGGIPSSVSEDELK 124
H ++G+ ++ K RT PK Q S + K+ KIFVGGIP + E EL+
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 120
Query: 125 NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+F K+G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEV 175
Score = 172 (65.6 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 98 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 157
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 158 DQAVNMHFHDIMGKKVEVKRAEPRDS 183
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 64/161 (39%), Positives = 104/161 (64%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S SD+PH P K+FIGGL TT +F K+G++ +S++M+D T + RGFGF
Sbjct: 11 SSSDSPH-----DPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGF 65
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+T+ D + VDKV+ T H ++ K ++ K P+ + +TKKIFVGG+ + + +++
Sbjct: 66 VTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDV 125
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
K +F ++GKV + ++ D TNR RGFGFV F++E+VV+++
Sbjct: 126 KQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKV 166
Score = 173 (66.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +TT ++F ++G + D+++M D+ T + RGFGF+T+ + VV+KV E
Sbjct: 110 KIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 169
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 170 HFHEINNKMVECKKAQPK 187
Score = 143 (55.4 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 26/60 (43%), Positives = 43/60 (71%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +++ LK++F K+G+V E ++RD T RSRGFGFV F + VD++L++
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 71/176 (40%), Positives = 104/176 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 80 T-HIINGKQVEIK----------RTIPKGSGQ----SKDFKTKKIFVGGIPSSVSEDELK 124
H ++G+ ++ K RT PK Q S + K+ KIFVGGIP + E EL+
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELR 120
Query: 125 NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+F K+G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+
Sbjct: 121 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEV 175
Score = 169 (64.5 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 98 DNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 157
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 158 DQAVNMHFHDIMGKKVEVKRAEPRDS 183
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 65/163 (39%), Positives = 106/163 (65%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
S S +D+ H PGK+FIGGL T+ + +F K+G+I + ++M+D T + RGF
Sbjct: 10 SGSLNDSQH-----DPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGF 64
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSED 121
GFIT+AD S VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ +S +
Sbjct: 65 GFITFADVSSVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSASTVVE 124
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
++K +F ++GKV + ++ D TNR RGFGFV F++E++V+++
Sbjct: 125 DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKV 167
Score = 166 (63.5 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL T ++F ++G + D+++M D+ T + RGFGF+T+ + +V+KV E
Sbjct: 111 KIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEI 170
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 171 HFHEINNKMVECKKAQPK 188
Score = 145 (56.1 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 94 IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFV 153
+ GS K+F+GG+ S D L+++F K+G++ E ++RD T RSRGFGF+
Sbjct: 8 VTSGSLNDSQHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFI 67
Query: 154 IFDSEEVVDEMLSK 167
F VD++L++
Sbjct: 68 TFADVSSVDKVLAQ 81
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 60/158 (37%), Positives = 104/158 (65%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF+T+
Sbjct: 14 DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 68 ADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNF 126
D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++K++
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHY 128
Query: 127 FSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
F ++GKV + ++ D TNR RGFGFV F+SE++V+++
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 166
Score = 168 (64.2 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +TT +F ++G + D+++M D+ T + RGFGF+T+ +V+KV E
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 170 HFHEINNKMVECKKAQPK 187
Score = 131 (51.2 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +++ L+ +F ++G+V E ++RD T RSRGFGFV F + VD++L++
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 60/158 (37%), Positives = 104/158 (65%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF+T+
Sbjct: 14 DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 68 ADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNF 126
D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++K++
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHY 128
Query: 127 FSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
F ++GKV + ++ D TNR RGFGFV F+SE++V+++
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 166
Score = 168 (64.2 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +TT +F ++G + D+++M D+ T + RGFGF+T+ +V+KV E
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 170 HFHEINNKMVECKKAQPK 187
Score = 131 (51.2 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +++ L+ +F ++G+V E ++RD T RSRGFGFV F + VD++L++
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 60/158 (37%), Positives = 104/158 (65%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF+T+
Sbjct: 14 DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 68 ADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNF 126
D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++K++
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHY 128
Query: 127 FSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
F ++GKV + ++ D TNR RGFGFV F+SE++V+++
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 166
Score = 168 (64.2 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +TT +F ++G + D+++M D+ T + RGFGF+T+ +V+KV E
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 170 HFHEINNKMVECKKAQPK 187
Score = 131 (51.2 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +++ L+ +F ++G+V E ++RD T RSRGFGFV F + VD++L++
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 60/158 (37%), Positives = 103/158 (65%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF+T+
Sbjct: 14 DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 68 ADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNF 126
D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++K +
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQY 128
Query: 127 FSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
F ++GKV + ++ D TNR RGFGFV F+SE++V+++
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 166
Score = 170 (64.9 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +TT ++F ++G + D+++M D+ T + RGFGF+T+ +V+KV E
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 170 HFHEINNKMVECKKAQPK 187
Score = 131 (51.2 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +++ L+ +F ++G+V E ++RD T RSRGFGFV F + VD++L++
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 62/157 (39%), Positives = 102/157 (64%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL +TT + + ++G+ITD ++M+D T + RGFGF+T++ + VD ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 80 T-HIINGKQVEIKRTIPKGS-GQSK-DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
HII+GK V+ KR +P+ +S+ + TK+++V G+ +ED L +F+KYG V +
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKS 143
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMID 172
+II D T + RGFGFV FD + VD+ +L K +M++
Sbjct: 144 EIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVN 180
Score = 165 (63.1 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 29/92 (31%), Positives = 57/92 (61%)
Query: 6 KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFI 65
+ D + S ++++ G+ +D T ++F KYG +T S I+ D+ T +PRGFGF+
Sbjct: 101 RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFV 160
Query: 66 TYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
T+ D VD+ V++ +H++NG + ++++ + K
Sbjct: 161 TFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 192
Score = 159 (61.0 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 33/86 (38%), Positives = 53/86 (61%)
Query: 88 VEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRS 147
VEIK G + +KIFVGG+ S+ ++D ++ F+S++G++ + ++RD T RS
Sbjct: 4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS 63
Query: 148 RGFGFVIFDSEEVVDE-MLSKGNMID 172
RGFGFV F + VD M + ++ID
Sbjct: 64 RGFGFVTFSGKTEVDAAMKQRPHIID 89
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 322 (118.4 bits), Expect = 4.2e-28, P = 4.2e-28
Identities = 61/163 (37%), Positives = 106/163 (65%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMK-DRYTGQPRGFGFITYADPSVVDKVI 77
GKIF+GGL K ++ +F +G++ +S+++K + RGFGF+T+ DPSV+D+VI
Sbjct: 106 GKIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVIDEVI 165
Query: 78 EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H I GK VEI+R IPK +++ K +K+FVGG+P ++ D+ N+FS++G++ E+
Sbjct: 166 LINHSIEGKNVEIRRAIPKEE-MTEEPKKQKLFVGGLPKHITSDDFNNYFSEFGEISEYN 224
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
++ + + +GFGF+ F E V + +L++ I + G +V+I
Sbjct: 225 LLTE-KNGTIKGFGFICFKDESVNEIILNEQQHI-ILGKRVDI 265
Score = 153 (58.9 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 30/73 (41%), Positives = 50/73 (68%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+F+GGLPK T FN +F ++G+I++ ++ ++ G +GFGFI + D SV + ++ E
Sbjct: 195 KLFVGGLPKHITSDDFNNYFSEFGEISEYNLLTEK-NGTIKGFGFICFKDESVNEIILNE 253
Query: 79 DTHIINGKQVEIK 91
HII GK+V+I+
Sbjct: 254 QQHIILGKRVDIR 266
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 59/158 (37%), Positives = 102/158 (64%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF+T+
Sbjct: 14 DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 68 ADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNF 126
D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++K +
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQY 128
Query: 127 FSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
F ++ KV + ++ D TNR RGFGFV F+SE++V+++
Sbjct: 129 FEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 166
Score = 162 (62.1 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +TT ++F ++ + D+++M D+ T + RGFGF+T+ +V+KV E
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 170 HFHEINNKMVECKKAQPK 187
Score = 131 (51.2 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +++ L+ +F ++G+V E ++RD T RSRGFGFV F + VD++L++
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 56/146 (38%), Positives = 98/146 (67%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF+T+ D + VDKV+ +
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 79 DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H ++ K ++ K P+ + +TKKIFVGG+ + + +++K +F ++GKV + +
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 120
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEM 164
+ D TNR RGFGFV F+SE++V+++
Sbjct: 121 MFDKTTNRHRGFGFVTFESEDIVEKV 146
Score = 170 (64.9 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +TT ++F ++G + D+++M D+ T + RGFGF+T+ +V+KV E
Sbjct: 90 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 149
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 150 HFHEINNKMVECKKAQPK 167
Score = 131 (51.2 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +++ L+ +F ++G+V E ++RD T RSRGFGFV F + VD++L++
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 57/145 (39%), Positives = 98/145 (67%)
Query: 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-ED 79
+FIGGL T+ + +F K+G+I + ++M+D T + RGFGF+T+ADP+ VDKV+ +
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 80 THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139
H ++ K ++ K P+ + +TKKIFVGG+ ++ +++K +F ++GKV + ++
Sbjct: 61 HHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLM 120
Query: 140 RDHETNRSRGFGFVIFDSEEVVDEM 164
D TNR RGFGFV F++E+VV+++
Sbjct: 121 FDKTTNRHRGFGFVTFENEDVVEKV 145
Score = 168 (64.2 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +T ++F ++G + D+++M D+ T + RGFGF+T+ + VV+KV E
Sbjct: 89 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 148
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 149 HFHEINNKMVECKKAQPK 166
Score = 142 (55.0 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 109 IFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
+F+GG+ S D L+++FSK+G++ E ++RD T RSRGFGFV F VD++L +
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 59
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 62/165 (37%), Positives = 103/165 (62%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GGL TT HF +YG +TD V+++++ + R FGF+TY+ P D +
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 80 T-HIINGKQVEIKRTIPK-GSGQSKDF-KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
HI++G VE+KR + + +G+ + K KKIF+GG+ + ED L++ FS++G V +
Sbjct: 71 RPHILDGNNVELKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKA 130
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEI 180
++I D ET + RGFGFV F+ + D+ ++ K +MI+ G +VE+
Sbjct: 131 EVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMIN--GHKVEV 173
Score = 149 (57.5 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIE 78
KIFIGGL D F ++G + + ++ D+ TG+ RGFGF+ + D DK V+
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVL 161
Query: 79 DTHIINGKQVEIKRTIPKGSGQS 101
H+ING +VE+K+ + K Q+
Sbjct: 162 KFHMINGHKVEVKKALTKQEMQA 184
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 61/149 (40%), Positives = 88/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H +NG+ VE KR + + Q D KKIFVGGI E L+++F +YGK
Sbjct: 68 RPHKVNGRVVEPKRAVSREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVI 127
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+I+ D + + RGF FV FD + VD+++
Sbjct: 128 EIVTDRGSGKKRGFAFVTFDDRDSVDKIV 156
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 34/98 (34%), Positives = 53/98 (54%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ + KIF+GG+ +DT +FG+YG I+ DR +G+ RGF F
Sbjct: 84 SREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAF 143
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK VI+ H +NG E+++ G+S
Sbjct: 144 VTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSNQRGRS 181
Score = 125 (49.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 21/62 (33%), Positives = 41/62 (66%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
+ +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD
Sbjct: 5 QVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Query: 165 LS 166
++
Sbjct: 65 MN 66
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 64/164 (39%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS +P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSASPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + T H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 169 (64.5 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H + G E+++ +PK
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPK 183
Score = 126 (49.4 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 22/71 (30%), Positives = 44/71 (61%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDEMLS 166
+ E VD ++
Sbjct: 63 ATVEEVDAAMN 73
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 65/169 (38%), Positives = 98/169 (57%)
Query: 1 MGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60
+G SK P + K+FIGGL +TT + HF ++G +TD V+MKD T + R
Sbjct: 17 VGRMSKEGQPREPEQLR--KLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSR 74
Query: 61 GFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDFK---TKKIFVGGIPS 116
GFGF+TY+ V+ ++ H ++G+ VE KR + + SK F KKIFVGGI
Sbjct: 75 GFGFVTYSSVDEVNASMDARPHKVDGRLVEPKRAVSR-EDSSKPFAHTTVKKIFVGGIKD 133
Query: 117 SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
E+ L+++F ++GK+ +I+ DH+T RGF FV FD + VD ++
Sbjct: 134 DTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIV 182
Score = 148 (57.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIE 78
KIF+GG+ DT +F ++G I IM D TG RGF F+T+ D VD+ VI+
Sbjct: 125 KIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQ 184
Query: 79 DTHIINGKQVEIKRTIPK 96
H +NG E+++ + K
Sbjct: 185 KYHTVNGHNCEVRKALSK 202
Score = 127 (49.8 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 31/95 (32%), Positives = 56/95 (58%)
Query: 87 QVEIKRTIPKGSGQSKD-FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETN 145
+ EI + K GQ ++ + +K+F+GG+ ++D L+ F ++G + + +++D T
Sbjct: 13 RTEIVGRMSK-EGQPREPEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTK 71
Query: 146 RSRGFGFVIFDS-EEVVDEMLSKGNMIDMAGTQVE 179
RSRGFGFV + S +EV M ++ + +D G VE
Sbjct: 72 RSRGFGFVTYSSVDEVNASMDARPHKVD--GRLVE 104
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 300 (110.7 bits), Expect = 2.3e-26, P = 2.3e-26
Identities = 60/151 (39%), Positives = 93/151 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT +G++G + D V+M+D T + RGFGFITY +VD+ E+
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
HII+GK VE KR +P+ +S++ KK+FVGG+ + E+ L+ +F ++G V+
Sbjct: 93 RPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSV 152
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
+++ D T + RGF FV FD + VD+ + K
Sbjct: 153 KLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183
Score = 137 (53.3 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML- 165
+K+F+GG+ +E+ LK F+ ++GKV++ ++RD T RSRGFGF+ + +VD
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 166 SKGNMIDMAGTQVE 179
++ ++ID G VE
Sbjct: 92 NRPHIID--GKTVE 103
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 167 (63.8 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/164 (38%), Positives = 95/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 165 (63.1 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCK 183
Score = 127 (49.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 65/181 (35%), Positives = 105/181 (58%)
Query: 3 SKSKSDNPHTGDGASPG--KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60
+ SDN G K+F+GGL +TT HFGKYG+I + D TG+ R
Sbjct: 38 TNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSR 97
Query: 61 GFGFITYADPSVVDKV-IEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVS 119
GF FI + + +DKV D HIIN K+V+ PK ++K + KIFVGG+ + +S
Sbjct: 98 GFAFIVFTNTEAIDKVSAADEHIINSKKVD-----PK---KAKA-RHGKIFVGGLTTEIS 148
Query: 120 EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179
++E+K +F ++G ++E ++ D + ++ +GF F+ FDSE+VV ++L +AG +V+
Sbjct: 149 DEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQ-KIAGKEVD 207
Query: 180 I 180
+
Sbjct: 208 V 208
Score = 139 (54.0 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 33/97 (34%), Positives = 52/97 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SK +P A GKIF+GGL + + +FG++G+I + + D+ Q +GF F
Sbjct: 123 SKKVDPKKAK-ARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCF 181
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ 100
IT+ VV +++ I GK+V++KR PK Q
Sbjct: 182 ITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQ 218
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 63/164 (38%), Positives = 94/164 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 163
Score = 168 (64.2 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 35/93 (37%), Positives = 54/93 (58%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D + VDK VI+ H +NG E+++ + K
Sbjct: 151 VTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSK 183
Score = 127 (49.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEKVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 64/165 (38%), Positives = 101/165 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT + K++ ++G++TD V+++D + + RG GF+T++ + VD +
Sbjct: 10 KLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAA 69
Query: 80 T-HIINGKQVEIKRTIPK-GSGQ-SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ +E +R IP+ SGQ + KK+FVGGI E L+ +F KYGK+
Sbjct: 70 RPHSIDGRVLEPRRAIPREASGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEKYGKIDAI 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEI 180
+II D ++ R RGFGFV FD + VD++ L K + I+ G E+
Sbjct: 130 EIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAIN--GHHAEV 172
Score = 162 (62.1 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+F+GG+ +DT ++F KYG I I+ DR +G+ RGFGF+T+ D VDK++ +
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQ 160
Query: 79 DTHIINGKQVEIKRTI 94
H ING E+++ +
Sbjct: 161 KYHAINGHHAEVRKAL 176
Score = 125 (49.1 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 24/74 (32%), Positives = 46/74 (62%)
Query: 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEE 159
Q + + +K+F+GG+ +E+ L+ ++ ++G++ + ++RD + RSRG GFV F S
Sbjct: 2 QKEAEQIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVT 61
Query: 160 VVDE-MLSKGNMID 172
VD M ++ + ID
Sbjct: 62 EVDAAMAARPHSID 75
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 57/148 (38%), Positives = 88/148 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ V +
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCAR 73
Query: 80 THIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+ +
Sbjct: 74 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIE 133
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEML 165
++ D ++ + RGF FV FD + VD+++
Sbjct: 134 VMEDRQSGKKRGFAFVTFDDHDTVDKIV 161
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 89 SREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 148
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 149 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 186
Score = 145 (56.1 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 29/84 (34%), Positives = 50/84 (59%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
+G + + +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGFGFV +
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 156 DSEEVVDEMLSKGNMIDMAGTQVE 179
EEV M ++ + +D G VE
Sbjct: 62 SCEEVDAAMCARPHKVD--GRVVE 83
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/149 (38%), Positives = 89/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
Score = 185 (70.2 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 172 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 139 (54.0 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF 150
+R +G + + +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGF
Sbjct: 19 RRRGAQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 78
Query: 151 GFVIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
GFV + E VD M ++ + +D G VE
Sbjct: 79 GFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/149 (38%), Positives = 89/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
Score = 185 (70.2 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 172 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 139 (54.0 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF 150
+R +G + + +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGF
Sbjct: 19 RRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 78
Query: 151 GFVIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
GFV + E VD M ++ + +D G VE
Sbjct: 79 GFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/149 (38%), Positives = 89/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
Score = 185 (70.2 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 172 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 139 (54.0 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF 150
+R +G + + +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGF
Sbjct: 19 RRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 78
Query: 151 GFVIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
GFV + E VD M ++ + +D G VE
Sbjct: 79 GFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/149 (38%), Positives = 89/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
Score = 185 (70.2 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 172 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 139 (54.0 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF 150
+R +G + + +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGF
Sbjct: 19 RRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 78
Query: 151 GFVIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
GFV + E VD M ++ + +D G VE
Sbjct: 79 GFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/149 (38%), Positives = 89/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
Score = 185 (70.2 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 172 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 139 (54.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF 150
+R +G + + +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGF
Sbjct: 19 RRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 78
Query: 151 GFVIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
GFV + E VD M ++ + +D G VE
Sbjct: 79 GFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/149 (38%), Positives = 89/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
Score = 185 (70.2 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 172 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 139 (54.0 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF 150
+R +G + + +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGF
Sbjct: 19 RRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGF 78
Query: 151 GFVIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
GFV + E VD M ++ + +D G VE
Sbjct: 79 GFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/149 (38%), Positives = 89/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 74 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 133
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 134 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 162
Score = 185 (70.2 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 90 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 149
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 150 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 187
Score = 138 (53.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
+G + + +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGFGFV +
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
E VD M ++ + +D G VE
Sbjct: 62 SCVEEVDAAMCARPHKVD--GRVVE 84
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/149 (38%), Positives = 89/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 74 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 133
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 134 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 162
Score = 185 (70.2 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 90 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 149
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 150 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 187
Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
+G + + +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGFGFV +
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
E VD M ++ + +D G VE
Sbjct: 62 SCVEEVDAAMCARPHKVD--GRVVE 84
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/149 (38%), Positives = 88/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 34 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 93
Query: 80 T-HIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+ +F KYGK+
Sbjct: 94 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETI 153
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 154 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 182
Score = 184 (69.8 bits), Expect = 9.1e-14, P = 9.1e-14
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT ++F KYG I +M+DR +G+ RGF F
Sbjct: 110 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAF 169
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K Q+
Sbjct: 170 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQT 207
Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 92 RTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFG 151
R +G + + +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGFG
Sbjct: 18 RRSSQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFG 77
Query: 152 FVIFDSEEVVDEMLS-KGNMIDMAGTQVE 179
FV + E VD +S + + +D G VE
Sbjct: 78 FVTYSCVEEVDAAMSARPHKVD--GRVVE 104
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/149 (38%), Positives = 88/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 22 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 81
Query: 80 T-HIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+ +F KYGK+
Sbjct: 82 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 142 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 170
Score = 184 (69.8 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT ++F KYG I +M+DR +G+ RGF F
Sbjct: 98 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAF 157
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K Q+
Sbjct: 158 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQT 195
Score = 137 (53.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGFGFV + E VD +S
Sbjct: 21 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 80
Query: 167 -KGNMIDMAGTQVE 179
+ + +D G VE
Sbjct: 81 ARPHKVD--GRVVE 92
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/149 (38%), Positives = 88/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 69
Query: 80 T-HIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+ +F KYGK+
Sbjct: 70 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETI 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ D ++ + RGF FV FD + VD+++
Sbjct: 130 EVMEDRQSGKKRGFAFVTFDDHDTVDKIV 158
Score = 184 (69.8 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT ++F KYG I +M+DR +G+ RGF F
Sbjct: 86 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAF 145
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K Q+
Sbjct: 146 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQT 183
Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGFGFV + E VD +S
Sbjct: 9 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 68
Query: 167 -KGNMIDMAGTQVE 179
+ + +D G VE
Sbjct: 69 ARPHKVD--GRVVE 80
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 63/165 (38%), Positives = 98/165 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT HF K+G+I D V+MKD T + RGFGFITY+ S++D+ +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF--KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR +P+ S + KK+FVG + E ++++F +G +++
Sbjct: 92 RPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDI 151
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEI 180
I+ D ET + RGF FV FD + VD++ L K + ++ G V++
Sbjct: 152 NIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLN--GKMVDV 194
Score = 171 (65.3 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D+P+ G A+ K+F+G L D + +F +G+I D I+ D+ TG+ RGF F+ +
Sbjct: 113 DSPNAG--ATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEF 170
Query: 68 ADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQ 100
D VDKV+ + H +NGK V++K+ +PK + Q
Sbjct: 171 DDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQ 204
Score = 135 (52.6 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-ML 165
+K+F+GG+ +++ LK F K+G +++ +++D T RSRGFGF+ + ++DE
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 166 SKGNMIDMAGTQVE 179
S+ + ID G VE
Sbjct: 91 SRPHKID--GRVVE 102
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 59/149 (39%), Positives = 88/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD +
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 95
Query: 80 T-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+I+ D + + RGF FV FD + VD+++
Sbjct: 156 EIMTDRGSGKKRGFAFVTFDDHDSVDKIV 184
Score = 167 (63.8 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 112 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 172 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 204
Score = 130 (50.8 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF 150
K+ PK + + + K+F+GG+ +++ L++ F ++G + + ++RD T RSRGF
Sbjct: 21 KKARPKSPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 78
Query: 151 GFVIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
GFV + + E VD M ++ + +D G VE
Sbjct: 79 GFVTYATVEEVDAAMNARPHKVD--GRVVE 106
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 59/149 (39%), Positives = 88/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD +
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 93
Query: 80 T-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+
Sbjct: 94 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 153
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+I+ D + + RGF FV FD + VD+++
Sbjct: 154 EIMTDRGSGKKRGFAFVTFDDHDSVDKIV 182
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 110 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 169
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 170 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 202
Score = 126 (49.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-ML 165
+K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD M
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 92
Query: 166 SKGNMIDMAGTQVE 179
++ + +D G VE
Sbjct: 93 ARPHKVD--GRVVE 104
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 59/160 (36%), Positives = 98/160 (61%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI- 77
GK+F+GGL DT+ +F K+G++TD I D TG+ RGFGFI + +PS VDKV+
Sbjct: 95 GKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLA 154
Query: 78 EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
+ H ++G+Q++ PK + K KKIFVGG+ +E+ ++ +F +G++ +
Sbjct: 155 QKEHRLDGRQID-----PKKAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGEIETIE 209
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177
+ D ++N+ RGF F+ F EE V ++L K +++GT+
Sbjct: 210 LPMDPKSNKRRGFVFITFKEEEAVKKILEK-KYHNVSGTK 248
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 57/151 (37%), Positives = 89/151 (58%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+ IGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCA 68
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 69 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 128
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
+++ D ++ + RGF FV FD + VD+++ +
Sbjct: 129 EVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQ 159
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+D +G+ RGF F
Sbjct: 85 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAF 144
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK+++ HIING E+K+ + K QS
Sbjct: 145 VTFDDHDTVDKIVDQKYHIINGHNCEVKKALSKQEMQS 182
Score = 127 (49.8 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML- 165
+K+ +GG+ ++D L+ F K+G + + ++RD +T RSRGFGFV + E VD +
Sbjct: 8 RKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVC 67
Query: 166 SKGNMIDMAGTQVE 179
++ + +D G VE
Sbjct: 68 ARPHKVD--GRVVE 79
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 62/163 (38%), Positives = 100/163 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 18 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 77
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 78 RPHTIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 137
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGFV FD + VD++ L K + I+ +V
Sbjct: 138 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 180
Score = 161 (61.7 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGF
Sbjct: 94 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 151
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
GF+T+ D VDK++ + H ING E+++ + +
Sbjct: 152 GFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 186
Score = 148 (57.2 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 34/91 (37%), Positives = 57/91 (62%)
Query: 94 IPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRG 149
+P+G +S D++ K K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRG
Sbjct: 1 MPRGDRES-DWREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 59
Query: 150 FGFVIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
FGFV F S VD M ++ + ID G VE
Sbjct: 60 FGFVTFSSMAEVDAAMAARPHTID--GRVVE 88
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 62/163 (38%), Positives = 100/163 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGFV FD + VD++ L K + I+ +V
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEV 184
Score = 161 (61.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGF
Sbjct: 98 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 155
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
GF+T+ D VDK++ + H ING E+++ + +
Sbjct: 156 GFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSR 190
Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
V F S VD M ++ + ID G VE
Sbjct: 67 VTFSSMAEVDAAMAARPHSID--GRVVE 92
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 61/165 (36%), Positives = 98/165 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G++TD V+++ + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIP--KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ V+ KR + K Q KK+FVGGI E L+ +F KYGK+
Sbjct: 82 RPHSIDGRVVDPKRAVSREKSEKQGSLVNVKKLFVGGIKEDTEEHHLREYFEKYGKIDAI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEI 180
+II D ++ + RGFGFV FD + VD+ ML K + I+ G + E+
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAIN--GHRAEV 184
Score = 167 (63.8 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 42/126 (33%), Positives = 69/126 (54%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
S+ KS+ G + K+F+GG+ +DT ++F KYG I I+ DR +G+ RGF
Sbjct: 98 SREKSEKQ--GSLVNVKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGF 155
Query: 63 GFITYADPSVVDKV-IEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGG-IPSSVSE 120
GF+T+ D VDK+ ++ H ING + E+ + + + + K+ + + GG SVS
Sbjct: 156 GFVTFDDYDPVDKIMLQKYHAINGHRAEVGKALSRQ--EMKEIQGPRSRKGGPFGFSVSS 213
Query: 121 DELKNF 126
+ NF
Sbjct: 214 NGGGNF 219
Score = 143 (55.4 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 27/82 (32%), Positives = 53/82 (64%)
Query: 92 RTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFG 151
+++P + ++ + +K+F+GG+ S +E+ LKN++ ++G++ + +IR + +SRGFG
Sbjct: 6 KSVPVKREKKENEQIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFG 65
Query: 152 FVIFDSEEVVDE-MLSKGNMID 172
FV F S VD M ++ + ID
Sbjct: 66 FVTFSSVAEVDAAMAARPHSID 87
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 62/163 (38%), Positives = 100/163 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGFV FD + VD++ L K + I+ +V
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 184
Score = 161 (61.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGF
Sbjct: 98 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 155
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
GF+T+ D VDK++ + H ING E+++ + +
Sbjct: 156 GFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
V F S VD M ++ + ID G VE
Sbjct: 67 VTFSSMAEVDAAMAARPHSID--GRVVE 92
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 62/163 (38%), Positives = 100/163 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGFV FD + VD++ L K + I+ +V
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 184
Score = 161 (61.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGF
Sbjct: 98 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 155
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
GF+T+ D VDK++ + H ING E+++ + +
Sbjct: 156 GFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
V F S VD M ++ + ID G VE
Sbjct: 67 VTFSSMAEVDAAMAARPHSID--GRVVE 92
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 62/163 (38%), Positives = 100/163 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGFV FD + VD++ L K + I+ +V
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 184
Score = 161 (61.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGF
Sbjct: 98 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 155
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
GF+T+ D VDK++ + H ING E+++ + +
Sbjct: 156 GFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
V F S VD M ++ + ID G VE
Sbjct: 67 VTFSSMAEVDAAMAARPHSID--GRVVE 92
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 62/163 (38%), Positives = 100/163 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 81 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 140
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGFV FD + VD++ L K + I+ +V
Sbjct: 141 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 183
Score = 161 (61.7 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGF
Sbjct: 97 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 154
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
GF+T+ D VDK++ + H ING E+++ + +
Sbjct: 155 GFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 189
Score = 145 (56.1 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 6 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 65
Query: 153 VIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
V F S VD M ++ + ID G VE
Sbjct: 66 VTFSSMAEVDAAMAARPHSID--GRVVE 91
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 62/163 (38%), Positives = 100/163 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 81 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 140
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGFV FD + VD++ L K + I+ +V
Sbjct: 141 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 183
Score = 161 (61.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGF
Sbjct: 97 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 154
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
GF+T+ D VDK++ + H ING E+++ + +
Sbjct: 155 GFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 189
Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 6 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 65
Query: 153 VIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
V F S VD M ++ + ID G VE
Sbjct: 66 VTFSSMAEVDAAMAARPHSID--GRVVE 91
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 62/163 (38%), Positives = 100/163 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGFV FD + VD++ L K + I+ +V
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEV 184
Score = 160 (61.4 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGF
Sbjct: 98 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 155
Query: 63 GFITYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 96
GF+T+ D VDK+ ++ H ING E+++ + +
Sbjct: 156 GFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSR 190
Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
V F S VD M ++ + ID G VE
Sbjct: 67 VTFSSMAEVDAAMAARPHSID--GRVVE 92
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 62/163 (38%), Positives = 100/163 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGFV FD + VD++ L K + I+ +V
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 172
Score = 161 (61.7 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGF
Sbjct: 86 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 143
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
GF+T+ D VDK++ + H ING E+++ + +
Sbjct: 144 GFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
Score = 141 (54.7 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-ML 165
+K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGFV F S VD M
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 SKGNMIDMAGTQVE 179
++ + ID G VE
Sbjct: 69 ARPHSID--GRVVE 80
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 66/183 (36%), Positives = 105/183 (57%)
Query: 3 SKSKSDNPHTGDGASP---G-KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQ 58
SK + D D +SP G K+F+GGL DT+ +F K+G+++D I D TG+
Sbjct: 44 SKGEEDAGCVADISSPLTEGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGR 103
Query: 59 PRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSS 117
RGFGFI + D VDKV+E H ++G+ ++ K K KD KKIFVGG+
Sbjct: 104 SRGFGFILFKDAESVDKVLEHKEHRLDGRLIDPK----KAMAMKKD-PIKKIFVGGLNPE 158
Query: 118 VSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177
ED+++ +F +G++ ++ D +TN+ RGF F+ F E+ V ++L K +++G++
Sbjct: 159 AGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEK-KFHNVSGSK 217
Query: 178 VEI 180
EI
Sbjct: 218 CEI 220
Score = 117 (46.2 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + ++F +G+I + D T + RGF FIT+ + V K++E
Sbjct: 149 KIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEK 208
Query: 80 T-HIINGKQVEIKRTIPK 96
H ++G + EIK PK
Sbjct: 209 KFHNVSGSKCEIKIAQPK 226
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 62/163 (38%), Positives = 100/163 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F++YGK+
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTI 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGFV FD + VD++ L K + I+ +V
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 172
Score = 163 (62.4 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGF
Sbjct: 86 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGF 143
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
GF+T+ D VDK++ + H ING E+++ + +
Sbjct: 144 GFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 178
Score = 141 (54.7 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-ML 165
+K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGFV F S VD M
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 SKGNMIDMAGTQVE 179
++ + ID G VE
Sbjct: 69 ARPHSID--GRVVE 80
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 58/165 (35%), Positives = 102/165 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GGL TT +F ++G++TD V++++ + R FGF+TY+ D +
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 80 T-HIINGKQVEIKRTIPK-GSGQSKDF-KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H+++GK VE+KR + + +G+ + K KKIFVGG+ + E +L FFS++G + +
Sbjct: 69 RPHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKS 128
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEI 180
++I D +T + RGFGFV F+ + D+ ++ K +MI+ G +VE+
Sbjct: 129 EVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMIN--GHKVEV 171
Score = 155 (59.6 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIE 78
KIF+GGL D + F ++G I S ++ D+ TG+ RGFGF+ + D DK V+
Sbjct: 100 KIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVL 159
Query: 79 DTHIINGKQVEIKRTIPK 96
H+ING +VE+K+ + K
Sbjct: 160 KFHMINGHKVEVKKALTK 177
Score = 121 (47.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/77 (31%), Positives = 47/77 (61%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE- 163
K K+FVGG+ + D L+++F ++G + + ++++ + RSR FGFV + + E D
Sbjct: 6 KLCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAA 65
Query: 164 MLSKGNMIDMAGTQVEI 180
M ++ +++D G VE+
Sbjct: 66 MAARPHVVD--GKNVEV 80
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 57/165 (34%), Positives = 97/165 (58%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GGL TT HF +YG +TD V++ ++ + R FGF+TY+ D +
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF--KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
HI++G V++KR + + + K KKIFVGG+ + ++ L+++FS++G + +
Sbjct: 67 RPHIVDGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKA 126
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEI 180
Q+I D +T + RGFGFV FD + D+ ++ K + I G +VE+
Sbjct: 127 QVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSI--CGHKVEV 169
Score = 145 (56.1 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIE 78
KIF+GGL D +F ++G I + ++ D+ TG+ RGFGF+ + D DK V+
Sbjct: 98 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVM 157
Query: 79 DTHIINGKQVEIKRTIPKGSGQS 101
H I G +VE+K+ + K QS
Sbjct: 158 KFHSICGHKVEVKKALTKQEMQS 180
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 58/150 (38%), Positives = 92/150 (61%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGGL DTT +F K+GD+ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 76 GKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 135
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V +
Sbjct: 136 QKEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIE 191
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
+ D++TN+ RGF F+ F EE V +++ K
Sbjct: 192 LPMDNKTNKRRGFCFITFKEEEPVKKIMEK 221
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 62/163 (38%), Positives = 99/163 (60%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGKV
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQV 178
+II D ++ + RGFGF FD + VD++ L K + I+ +V
Sbjct: 142 EIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEV 184
Score = 157 (60.3 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 31/95 (32%), Positives = 54/95 (56%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG + I+ DR +G+ RGF
Sbjct: 98 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGF 155
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
GF T+ D VDK++ + H ING E+++ + +
Sbjct: 156 GFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
V F S VD M ++ + ID G VE
Sbjct: 67 VTFSSMAEVDAAMAARPHSID--GRVVE 92
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 55/149 (36%), Positives = 89/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TY+ VD ++
Sbjct: 39 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDA 98
Query: 80 T-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + S KK+FVGGI E+ L+ +F ++GK+ E
Sbjct: 99 RPHKVDGRAVEPKRAVSREDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKIDEV 158
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
I+ + +++ RGF F+ FD + VD ++
Sbjct: 159 NIMTEKNSDKRRGFAFITFDDHDAVDRIV 187
Score = 159 (61.0 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 30/93 (32%), Positives = 56/93 (60%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G ++ K+F+GG+ +DT ++FG++G I + IM ++ + + RGF F
Sbjct: 115 SREDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAF 174
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
IT+ D VD+ VI+ H +NG E+++ + +
Sbjct: 175 ITFDDHDAVDRIVIQKYHTVNGHNCEVRKALSR 207
Score = 121 (47.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML- 165
+K+F+GG+ +++ L+ F ++G + + ++RD T RSRGFGFV + S VD +
Sbjct: 38 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMD 97
Query: 166 SKGNMIDMAGTQVE 179
++ + +D G VE
Sbjct: 98 ARPHKVD--GRAVE 109
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 61/168 (36%), Positives = 92/168 (54%)
Query: 2 GSKSKSDNPHTGDGASPG---KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQ 58
G +S S P G G K+FIGGL TT A +HF YG +TD V++ + T +
Sbjct: 8 GRRSLSARPRRGTGMENSQLCKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKR 67
Query: 59 PRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIP 115
R FGF+TY+ D + + H ++G VE+KR + + + K KK+FVGG+
Sbjct: 68 SRCFGFVTYSAVEEADAAMAASPHAVDGNSVELKRAVSREDSAKPGAHAKVKKLFVGGLK 127
Query: 116 SSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE 163
V E +L FS++G V + +II D ++ + RGFGFV F + + D+
Sbjct: 128 GDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADK 175
Score = 161 (61.7 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 31/93 (33%), Positives = 52/93 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G A K+F+GGL D +HF ++G + + I+ D+ +G+ RGFGF
Sbjct: 105 SREDSAKPGAHAKVKKLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGF 164
Query: 65 ITYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 96
+ + + DK + H I G +VE+K+ +PK
Sbjct: 165 VYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPK 197
Score = 112 (44.5 bits), Expect = 0.00020, P = 0.00020
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
+G+G + K+F+GG+ +E L+ F+ YG + + ++ + +T RSR FGFV +
Sbjct: 18 RGTGMENS-QLCKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTY 76
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVEI 180
+ E D M + + +D G VE+
Sbjct: 77 SAVEEADAAMAASPHAVD--GNSVEL 100
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 58/162 (35%), Positives = 99/162 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GGL DT+ +F K+G++TD I D TG+ RGFGFI + +P V+KV+E
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ ++
Sbjct: 61 KEHRLDGRLIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIEL 115
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
D +TN+ RGF F+ F E+ V ++L K +++G++ EI
Sbjct: 116 PMDPKTNKRRGFVFITFKEEDPVKKVLEK-KFHNVSGSKCEI 156
Score = 142 (55.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/88 (36%), Positives = 49/88 (55%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + T ++FG++G+I + D T + RGF FIT+ + V KV+E
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK 144
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKT 106
H ++G + EIK PK Q + F +
Sbjct: 145 KFHNVSGSKCEIKVAQPKEVYQQQQFSS 172
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 58/162 (35%), Positives = 99/162 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GGL DT+ +F K+G++TD I D TG+ RGFGFI + +P V+KV+E
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ ++
Sbjct: 61 KEHRLDGRLIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIEL 115
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
D +TN+ RGF F+ F E+ V ++L K +++G++ EI
Sbjct: 116 PMDPKTNKRRGFVFITFKEEDPVKKVLEK-KFHNVSGSKCEI 156
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 32/88 (36%), Positives = 49/88 (55%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + T ++FG++G+I + D T + RGF FIT+ + V KV+E
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK 144
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKT 106
H ++G + EIK PK Q + F +
Sbjct: 145 KFHNVSGSKCEIKVAQPKEVYQQQQFSS 172
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 59/165 (35%), Positives = 96/165 (58%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT + ++ ++G +TD V+++D + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++GK V+ KR + + + KK+FVGGI E L+++F KYGK+
Sbjct: 82 RPHSVDGKVVDPKRAVAREESEKPGAHLAVKKLFVGGIKEDTEEHHLRDYFEKYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEI 180
+II D ++ + RGFGFV FD + VD++ L K + I+ G E+
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHHAEV 184
Score = 164 (62.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 35/105 (33%), Positives = 57/105 (54%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S+ P G + K+F+GG+ +DT +F KYG I I+ DR +G+ RGF
Sbjct: 98 AREESEKP--GAHLAVKKLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGF 155
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKT 106
GF+T+ D VDK++ + H ING E+ + + + Q T
Sbjct: 156 GFVTFDDHDPVDKIVLQKYHTINGHHAEVGKALSRQEMQEVQSST 200
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 61/156 (39%), Positives = 96/156 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + HF ++G +T V+M+D T + RGFGF+TYA VD +
Sbjct: 15 KLFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + Q+ D KKIFVGGI + +ED L+++F +YGK+
Sbjct: 74 RPHKVDGRVVEPKRAVSREDSQTLDAHLTVKKIFVGGIKEN-TEDHLRDYF-EYGKIEVI 131
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172
+I+ D + + RGF FV FD + VD+++ K + ++
Sbjct: 132 EIMTDRGSGKKRGFTFVTFDDHDSVDKIIQKYHTVN 167
Score = 150 (57.9 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GG+ K+ T +F +YG I IM DR +G+ RGF F+T+ D VDK+I+
Sbjct: 105 KIFVGGI-KENTEDHLRDYF-EYGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQK 162
Query: 80 THIINGKQVEIKRTIPK 96
H +NG E+++ + K
Sbjct: 163 YHTVNGHNCEVRKALSK 179
Score = 112 (44.5 bits), Expect = 0.00017, P = 0.00017
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-ML 165
+K+F+GG+ +++ L++ F ++G + ++RD T RSRGFGFV + + E VD M
Sbjct: 14 QKLFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 166 SKGNMIDMAGTQVE 179
++ + +D G VE
Sbjct: 73 ARPHKVD--GRVVE 84
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 57/150 (38%), Positives = 92/150 (61%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 45 GKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 104
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V +
Sbjct: 105 QKEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIE 160
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
+ D++TN+ RGF F+ F EE V +++ K
Sbjct: 161 LPMDNKTNKRRGFCFITFKEEEPVKKIMEK 190
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 58/149 (38%), Positives = 88/149 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT HF K+G+I D V+MKD T + RGFGFITY+ ++D
Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF--KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR +P+ S + KK+FVGG+ E+ L+ +F +G+++
Sbjct: 85 RPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSV 144
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
I+ D +T + RGF F+ FD + VD+++
Sbjct: 145 NIVSDKDTGKKRGFAFIEFDDYDPVDKII 173
Score = 157 (60.3 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 4 KSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFG 63
+ + D+P+ G A+ K+F+GGL D ++F +G I I+ D+ TG+ RGF
Sbjct: 102 RQEIDSPNAG--ATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFA 159
Query: 64 FITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
FI + D VDK+I + TH I K +++K+ I K
Sbjct: 160 FIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAK 193
Score = 129 (50.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ ++D LK F K+G +++ +++D +T RSRGFGF+ + ++D +
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 167 -KGNMIDMAGTQVE 179
+ + ID G VE
Sbjct: 84 ARPHKID--GRTVE 95
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 62/164 (37%), Positives = 91/164 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGG +TT + HF + G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKGPEQLQ--KLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TY VD + H ++G+ VE KRT K Q KKIF GGI E
Sbjct: 60 VTYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
Score = 165 (63.1 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 36/95 (37%), Positives = 53/95 (55%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
+ SK D+ G + KIF GG+ +DT +F +YG I IM DR +G+ RGF
Sbjct: 89 TSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGF 148
Query: 63 GFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
F+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 149 AFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSK 183
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 51/161 (31%), Positives = 92/161 (57%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+ + G+P D + K+GD+ D ++MKDR TG+ RGFG++T+A ++
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 80 THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139
H + + +E+K PK + K +IFV IPSSVSE + ++ F +YG++ + +
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMP 123
Query: 140 RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+D+ + + RG GF+ F S + V++++ + D+ GT V +
Sbjct: 124 KDYNSKQHRGIGFITFSSADSVEDLMEDTH--DLGGTTVAV 162
Score = 164 (62.8 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
+IF+ +P + + F HF +YG+ITD + KD + Q RG GFIT++ V+ ++ED
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 80 THIINGKQVEIKRTIPK 96
TH + G V + R PK
Sbjct: 152 THDLGGTTVAVDRATPK 168
Score = 163 (62.4 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 37/102 (36%), Positives = 57/102 (55%)
Query: 1 MGSKSKSDNPHT----GDGASPG---KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKD 53
+G+ + DNP T G+ + G KIF+G LP++ + +FG++G I D+ I KD
Sbjct: 215 LGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKD 274
Query: 54 RYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIP 95
RGFGF+T+A+ V D+V +H I G++V I P
Sbjct: 275 PKRSGHRGFGFVTFAENGVADRVARRSHEICGQEVAIDSATP 316
Score = 125 (49.1 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
KIFVG +P S D+L+++F ++G + + I +D + + RGFGFV F V D + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 168 GNMIDMAGTQVEI 180
+ ++ G +V I
Sbjct: 301 SH--EICGQEVAI 311
Score = 121 (47.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+ V GIP + D LK++ SK+G + + +++D T RSRGFG+V F S E L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 167 KG 168
KG
Sbjct: 62 KG 63
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 57/149 (38%), Positives = 85/149 (57%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FI GL +TT + HF ++G +TD V+M+D T +PRGFGF+TY VD +
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 80 T-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + Q KKIFVG I E L+ +F +YGK+
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVI 127
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+I+ D + + RGF FV FD + VD+++
Sbjct: 128 EIMTDRGSGQKRGFVFVTFDDHDSVDKIV 156
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+G + +DT ++F +YG I IM DR +GQ RGF F
Sbjct: 84 SREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVF 143
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 144 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 176
Score = 114 (45.2 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLS 166
K+F+ G+ +++ L++ F ++G + + ++RD T R RGFGFV + + E VD M +
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 167 KGNMIDMAGTQVE 179
+ + +D G VE
Sbjct: 68 RPHKVD--GRVVE 78
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 57/149 (38%), Positives = 91/149 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F K+GD+ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V ++
Sbjct: 156 KEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 211
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
D++TN+ RGF F+ F EE V +++ K
Sbjct: 212 PMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 57/149 (38%), Positives = 91/149 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F K+GD+ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V ++
Sbjct: 156 KEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 211
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
D++TN+ RGF F+ F EE V +++ K
Sbjct: 212 PMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 57/149 (38%), Positives = 91/149 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F K+GD+ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V ++
Sbjct: 156 KEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 211
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
D++TN+ RGF F+ F EE V +++ K
Sbjct: 212 PMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 57/148 (38%), Positives = 87/148 (58%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD +
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70
Query: 80 T-HIINGKQVEIKRTIP-KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ VE KR + + S + + KIFVG I E L+++F +YGK +
Sbjct: 71 RPHKVDGRVVEPKRAVSIEDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIE 130
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEML 165
I+ D + + RGF FV FD + VD+++
Sbjct: 131 IVTDRGSGKKRGFAFVTFDDRDSVDKIV 158
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIE 78
KIF+G + +DT +FG+YG I+ DR +G+ RGF F+T+ D VDK VI+
Sbjct: 101 KIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ 160
Query: 79 DTHIINGKQVEIKRTIPK 96
H +NG E+++ K
Sbjct: 161 KYHTVNGHNCEVRKAPSK 178
Score = 127 (49.8 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 26/76 (34%), Positives = 48/76 (63%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE- 163
+ +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD
Sbjct: 8 QVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 67
Query: 164 MLSKGNMIDMAGTQVE 179
M ++ + +D G VE
Sbjct: 68 MNARPHKVD--GRVVE 81
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 61/167 (36%), Positives = 97/167 (58%)
Query: 5 SKSDNPHTGDGASPG---KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
S S HT A+ K+FIGGL DTT +F K+G++ D + D TG+ RG
Sbjct: 80 SNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 62 FGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120
FGF+ + + VDKV++ H +NGK ++ KR K ++K+ KKIFVGG+ E
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPE 195
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
++++ +F +G+V ++ D++TN+ RGF F+ F EE V +++ K
Sbjct: 196 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 56/151 (37%), Positives = 86/151 (56%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + HF ++G +TD V+M+D + RGFGF+TY+ S VD +
Sbjct: 14 KLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMTA 73
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E ++ +F YGK+
Sbjct: 74 RPHKVDGRVVEPKRAVSREDSNKPGAHLTVKKIFVGGIKEDTEEYHIREYFECYGKIETI 133
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
I+ + T + RGF FV FD + VD+++++
Sbjct: 134 DIMEERSTGKKRGFCFVTFDDHDTVDKIVAQ 164
Score = 171 (65.3 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 36/98 (36%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT ++F YG I IM++R TG+ RGF F
Sbjct: 90 SREDSNKPGAHLTVKKIFVGGIKEDTEEYHIREYFECYGKIETIDIMEERSTGKKRGFCF 149
Query: 65 ITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK++ + H IN E+++ +PK QS
Sbjct: 150 VTFDDHDTVDKIVAQKYHTINSHNCEVRKALPKQEMQS 187
Score = 133 (51.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 100 QSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
+S+D K +K+F+GG+ +ED L+ F ++GK+ + ++RD RSRGFGFV +
Sbjct: 2 ESRDSKEPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTY 61
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
S VD M ++ + +D G VE
Sbjct: 62 SSVSEVDAAMTARPHKVD--GRVVE 84
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 58/149 (38%), Positives = 94/149 (63%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 80 T-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+II D ++ + RGFGFV FD + VD+++
Sbjct: 130 EIITDRQSGK-RGFGFVTFDDHDPVDKIV 157
Score = 146 (56.5 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 31/95 (32%), Positives = 54/95 (56%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGF
Sbjct: 86 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGF 142
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
GF+T+ D VDK++ + H NG E+++ + +
Sbjct: 143 GFVTFDDHDPVDKIVLQKYHTKNGHNAEVRKALSR 177
Score = 139 (54.0 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-EMLS 166
K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGFV F S VD M +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 167 KGNMIDMAGTQVE 179
+ + ID G VE
Sbjct: 70 RPHSID--GRVVE 80
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 59/164 (35%), Positives = 99/164 (60%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D + V+KV++
Sbjct: 69 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 128
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGI-PSSVSEDELKNFFSKYGKVLEH 136
H ++G+ ++ K K KD KKIFVGG+ P S +E++++ +F ++G++
Sbjct: 129 QKEHRLDGRVIDPK----KAMAMKKD-PVKKIFVGGLNPESPTEEKIREYFGEFGEIEAI 183
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
++ D + N+ RGF F+ F EE V ++L K ++G++ EI
Sbjct: 184 ELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKCEI 226
Score = 141 (54.7 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 46/147 (31%), Positives = 71/147 (48%)
Query: 27 PKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGK 86
P +TT AT N H + +TG G G T A PS E G
Sbjct: 9 PMETTGATENGH-----EAVPEASRGRGWTGAAAGAGGATAAPPSGNQNGAE------GD 57
Query: 87 QVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNR 146
Q+ + + +G K+FVGG+ S+ +LK++F+K+G+V++ I D T R
Sbjct: 58 QINASKN-EEDAG--------KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR 108
Query: 147 SRGFGFVIFDSEEVVDEMLS-KGNMID 172
SRGFGF++F V+++L K + +D
Sbjct: 109 SRGFGFILFKDAASVEKVLDQKEHRLD 135
Score = 133 (51.9 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 20 KIFIGGL-PKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
KIF+GGL P+ T ++FG++G+I + D + RGF FIT+ + V KV+E
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDF 104
H ++G + EIK PK Q + +
Sbjct: 214 KKFHTVSGSKCEIKVAQPKEVYQQQQY 240
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 62/164 (37%), Positives = 92/164 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIG L +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TYA VD + +NG+ VE KR + + Q KKIFVGGI +E
Sbjct: 60 VTYATVEEVDAAMNARPQKVNGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKED-TEH 118
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK +I+ D + RGF FV FD + VD+++
Sbjct: 119 HLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIV 162
Score = 147 (56.8 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 35/101 (34%), Positives = 53/101 (52%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT + +F +YG IM DR G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEHH-LRDYFEQYGKTEVIEIMTDRGRGKKRGFAF 149
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVE--IKRTIPKGSGQSK 102
+T+ D VDK VI+ H +NG E +K+ + S +
Sbjct: 150 VTFDDHDSVDKIVIQKYHTVNGHNCETRVKQDMASASSSQR 190
Score = 119 (46.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+G + +++ L++ F ++G + + ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDEMLS 166
+ E VD ++
Sbjct: 63 ATVEEVDAAMN 73
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 48/129 (37%), Positives = 90/129 (69%)
Query: 37 KHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIP 95
++FG++G++ + ++M+D T + RGFGF+T+ D + VDKV+ + H ++ K ++ K P
Sbjct: 5 EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 64
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
+ + +TKKIFVGG+ + + +++K++F ++GKV + ++ D TNR RGFGFV F
Sbjct: 65 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 124
Query: 156 DSEEVVDEM 164
+SE++V+++
Sbjct: 125 ESEDIVEKV 133
Score = 168 (64.2 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +TT +F ++G + D+++M D+ T + RGFGF+T+ +V+KV E
Sbjct: 77 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 137 HFHEINNKMVECKKAQPK 154
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V ++
Sbjct: 61 KEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGAFGEVESIEL 116
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
D++TN+ RGF F+ F EE V +++ K
Sbjct: 117 PMDNKTNKRRGFCFITFKEEEPVKKIMEK 145
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 57/163 (34%), Positives = 98/163 (60%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D + V+KV++
Sbjct: 70 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLD 129
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ +
Sbjct: 130 QKEHRLDGRVIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIE 184
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D ++N+ RGF F+ F EE V ++L K ++G++ EI
Sbjct: 185 LPMDPKSNKRRGFVFITFKEEEPVKKVLEK-KFHTISGSKCEI 226
Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + T ++FG++G+I + D + + RGF FIT+ + V KV+E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 214
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF 104
H I+G + EIK PK Q + +
Sbjct: 215 KFHTISGSKCEIKVAQPKEVYQQQQY 240
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V ++
Sbjct: 158 KEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
D++TN+ RGF F+ F EE V +++ K
Sbjct: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V ++
Sbjct: 158 KEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
D++TN+ RGF F+ F EE V +++ K
Sbjct: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V ++
Sbjct: 158 KEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
D++TN+ RGF F+ F EE V +++ K
Sbjct: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V ++
Sbjct: 91 KEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 146
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
D++TN+ RGF F+ F EE V +++ K
Sbjct: 147 PMDNKTNKRRGFCFITFKEEEPVKKIMEK 175
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V ++
Sbjct: 62 KEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 117
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
D++TN+ RGF F+ F EE V +++ K
Sbjct: 118 PMDNKTNKRRGFCFITFKEEEPVKKIMEK 146
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V ++
Sbjct: 158 KEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
D++TN+ RGF F+ F EE V +++ K
Sbjct: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 61/181 (33%), Positives = 103/181 (56%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
GSK + DG K+FIGGL DT+ ++ ++G++ D I D TG+ RG
Sbjct: 16 GSKINASKNQQDDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRG 71
Query: 62 FGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120
FGF+ + D + VDKV+E H ++GK ++ KR K + K+ KK+FVGG+ SE
Sbjct: 72 FGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KAL-KGKE-PPKKVFVGGLSPDTSE 127
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML-SKGNMIDMAGTQVE 179
+++K +F +G++ ++ D +TN RGF F+ + EE V ++L S+ + I +++
Sbjct: 128 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIK 187
Query: 180 I 180
+
Sbjct: 188 V 188
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 57/164 (34%), Positives = 100/164 (60%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI- 77
GK+F+GGL DTT +F K+G++ D + D TG+ RGFGF+ + + V+KVI
Sbjct: 54 GKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVIT 113
Query: 78 EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
+ H +NGK ++ K+ K ++K+ KKIFVGG+ E++++ +F YG+V +
Sbjct: 114 QKEHKLNGKVIDPKKA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFDAYGEVESIE 169
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKG-NMIDMAGTQVEI 180
+ +++TN+ RGF F+ F EE V +++ K + I ++ +V++
Sbjct: 170 LPMENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIGLSKCEVKV 213
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 58/155 (37%), Positives = 89/155 (57%)
Query: 20 KIFIGGLPKDTTYATFNKHF-G------KYGDITDSVIMKDRYTGQPRGFGFITYADPSV 72
K+FIGGL +TT + +HF G K+G +TD V+M+D T + RGFGF+TY+ V
Sbjct: 14 KLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEV 73
Query: 73 VDKVIEDTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKY 130
+ H ++G+ VE KR + + KKIFVGGI E L+++F KY
Sbjct: 74 DAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKY 133
Query: 131 GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
GK+ +++ D ++ + RGF FV FD + VD+++
Sbjct: 134 GKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 168
Score = 184 (69.8 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 96 SREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 155
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 156 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 193
Score = 124 (48.7 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS-------KYGKVLEHQIIRDHETNRSR 148
+G + + +K+F+GG+ ++D L+ F K+G + + ++RD +T RSR
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSR 61
Query: 149 GFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179
GFGFV + EEV M ++ + +D G VE
Sbjct: 62 GFGFVTYSCEEVDAAMCARPHKVD--GRVVE 90
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 60/162 (37%), Positives = 94/162 (58%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +T+ V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+TYA VD + H ++G+ VE +R + + S T KIFVGGI E L
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPERAVSREDSHSL---TVKIFVGGIKEDTEEHYL 116
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++ +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 117 RDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIV 158
Score = 130 (50.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
K + + +K+F+GG+ +++ L++ F ++G + E ++RD T RSRGFGFV +
Sbjct: 3 KSESPKEPEQLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTY 62
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ E VD M ++ + +D G VE
Sbjct: 63 ATVEEVDAAMNARPHKVD--GRVVE 85
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 274 (101.5 bits), Expect = 9.8e-24, P = 9.8e-24
Identities = 61/181 (33%), Positives = 103/181 (56%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
GSK + DG K+FIGGL DT+ ++ ++G++ D I D TG+ RG
Sbjct: 135 GSKINASKNQQDDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRG 190
Query: 62 FGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120
FGF+ + D + VDKV+E H ++GK ++ KR K + K+ KK+FVGG+ SE
Sbjct: 191 FGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KAL-KGKE-PPKKVFVGGLSPDTSE 246
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML-SKGNMIDMAGTQVE 179
+++K +F +G++ ++ D +TN RGF F+ + EE V ++L S+ + I +++
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIK 306
Query: 180 I 180
+
Sbjct: 307 V 307
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 274 (101.5 bits), Expect = 9.8e-24, P = 9.8e-24
Identities = 61/181 (33%), Positives = 103/181 (56%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
GSK + DG K+FIGGL DT+ ++ ++G++ D I D TG+ RG
Sbjct: 135 GSKINASKNQQDDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRG 190
Query: 62 FGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120
FGF+ + D + VDKV+E H ++GK ++ KR K + K+ KK+FVGG+ SE
Sbjct: 191 FGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KAL-KGKE-PPKKVFVGGLSPDTSE 246
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML-SKGNMIDMAGTQVE 179
+++K +F +G++ ++ D +TN RGF F+ + EE V ++L S+ + I +++
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIK 306
Query: 180 I 180
+
Sbjct: 307 V 307
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 274 (101.5 bits), Expect = 9.8e-24, P = 9.8e-24
Identities = 61/181 (33%), Positives = 103/181 (56%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
GSK + DG K+FIGGL DT+ ++ ++G++ D I D TG+ RG
Sbjct: 135 GSKINASKNQQDDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRG 190
Query: 62 FGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120
FGF+ + D + VDKV+E H ++GK ++ KR K + K+ KK+FVGG+ SE
Sbjct: 191 FGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KAL-KGKE-PPKKVFVGGLSPDTSE 246
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML-SKGNMIDMAGTQVE 179
+++K +F +G++ ++ D +TN RGF F+ + EE V ++L S+ + I +++
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIK 306
Query: 180 I 180
+
Sbjct: 307 V 307
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 57/163 (34%), Positives = 97/163 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D + V+KV++
Sbjct: 70 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 129
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ +
Sbjct: 130 QKEHRLDGRVIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIE 184
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D + N+ RGF F+ F EE V ++L K ++G++ EI
Sbjct: 185 LPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKCEI 226
Score = 134 (52.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + T ++FG++G+I + D + RGF FIT+ + V KV+E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF 104
H ++G + EIK PK Q + +
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQY 240
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 57/163 (34%), Positives = 97/163 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D + V+KV++
Sbjct: 70 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 129
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ +
Sbjct: 130 QKEHRLDGRVIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIE 184
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D + N+ RGF F+ F EE V ++L K ++G++ EI
Sbjct: 185 LPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKCEI 226
Score = 134 (52.2 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + T ++FG++G+I + D + RGF FIT+ + V KV+E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF 104
H ++G + EIK PK Q + +
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQY 240
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 57/163 (34%), Positives = 97/163 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D + V+KV++
Sbjct: 70 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 129
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ +
Sbjct: 130 QKEHRLDGRVIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIE 184
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D + N+ RGF F+ F EE V ++L K ++G++ EI
Sbjct: 185 LPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKCEI 226
Score = 134 (52.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + T ++FG++G+I + D + RGF FIT+ + V KV+E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF 104
H ++G + EIK PK Q + +
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQY 240
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 59/165 (35%), Positives = 100/165 (60%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIG L +TT + ++ ++G +TD V+++D + + R FGFIT++ + +D +
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKGS-GQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+GK V KR +P+ G+ T KK+FVGGI + E L+++F KYGK+
Sbjct: 82 RPHFIDGKMVMPKRAVPREDHGKLGALITVKKLFVGGITEDMKEHHLRDYFEKYGKINAI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEI 180
+I+ D ++ + RGFGF+ FD + VD++ L K + I+ G + E+
Sbjct: 142 EIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTIN--GHRAEV 184
Score = 156 (60.0 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 32/96 (33%), Positives = 53/96 (55%)
Query: 6 KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFI 65
+ D+ G + K+F+GG+ +D +F KYG I I+ D +G+ RGFGFI
Sbjct: 99 REDHGKLGALITVKKLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFI 158
Query: 66 TYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQ 100
T+ D VDK++ + H ING + E+++ + + Q
Sbjct: 159 TFDDHDPVDKIVLQKNHTINGHRAEVRKALSRQERQ 194
Score = 120 (47.3 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 24/82 (29%), Positives = 50/82 (60%)
Query: 92 RTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFG 151
+++P G+ ++ + K+F+G + S +E+ L N++ ++G + + +IRD + +SR FG
Sbjct: 6 QSVPLERGKRENEQFCKLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFG 65
Query: 152 FVIFDSEEVVDE-MLSKGNMID 172
F+ F S +D M ++ + ID
Sbjct: 66 FITFSSMAELDAAMAARPHFID 87
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 61/165 (36%), Positives = 95/165 (57%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
GSK + DG K+FIGGL DT+ + ++G++ D I D TG+ RG
Sbjct: 17 GSKINASKNQEDDG----KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRG 72
Query: 62 FGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120
FGF+ + D VD+V+E T H ++GK ++ KR K + K+ KK+FVGG+ ++E
Sbjct: 73 FGFVLFKDAESVDRVLELTEHKLDGKLIDPKRA--KAI-KGKE-PPKKVFVGGLSPDITE 128
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
++L+ +F YG++ ++ D +TN RGF FV F EE V ++L
Sbjct: 129 EQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLL 173
Score = 139 (54.0 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
P K+F+GGL D T ++FG YG+I + D T + RGF F+T+A V K++
Sbjct: 114 PKKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLL 173
Query: 78 EDT-HIINGKQVEIKRTIPK 96
E+ H I + EIK PK
Sbjct: 174 ENRYHQIGSGKCEIKVAQPK 193
Score = 40 (19.1 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 132 KVLEHQIIRDHETNRSRGFG 151
KV + + + + NR RGFG
Sbjct: 188 KVAQPKEVYRQQQNRDRGFG 207
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 57/163 (34%), Positives = 92/163 (56%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+G +TD V+M+D RGF F+TY+ V V+
Sbjct: 38 KLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMCA 97
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H + G VE KR + + +KIFVGGI E L+++F KYGK+
Sbjct: 98 RPHKVVGCVVEPKRAVSREDSIIPGAHLMVEKIFVGGIKEDTEEYNLRDYFEKYGKIETI 157
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179
+++ D ++ + RGF FV FD+ + VD+++ K + ++ +V+
Sbjct: 158 EVMEDRQSGKKRGFAFVTFDNHDTVDKVVQKYHTVNGHNCEVK 200
Score = 175 (66.7 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 35/97 (36%), Positives = 54/97 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 114 SREDSIIPGAHLMVEKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 173
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIK-RTIPKGSGQ 100
+T+ + VDKV++ H +NG E+K + +P Q
Sbjct: 174 VTFDNHDTVDKVVQKYHTVNGHNCEVKEQEMPSAGSQ 210
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 57/163 (34%), Positives = 97/163 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D S V+KV++
Sbjct: 75 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLD 134
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ +
Sbjct: 135 QKEHRLDGRVIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 189
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D + N+ RGF F+ F E+ V ++L K ++G++ EI
Sbjct: 190 LPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKCEI 231
Score = 132 (51.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + T ++FG++G+I + D + RGF FIT+ + V KV+E
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF 104
H ++G + EIK PK Q + +
Sbjct: 220 KFHTVSGSKCEIKVAQPKEVYQQQQY 245
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 57/163 (34%), Positives = 97/163 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D S V+KV++
Sbjct: 88 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLD 147
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ +
Sbjct: 148 QKEHRLDGRVIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 202
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D + N+ RGF F+ F E+ V ++L K ++G++ EI
Sbjct: 203 LPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKCEI 244
Score = 132 (51.5 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + T ++FG++G+I + D + RGF FIT+ + V KV+E
Sbjct: 173 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 232
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF 104
H ++G + EIK PK Q + +
Sbjct: 233 KFHTVSGSKCEIKVAQPKEVYQQQQY 258
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 57/163 (34%), Positives = 97/163 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D S V+KV++
Sbjct: 74 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLD 133
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ +
Sbjct: 134 QKEHRLDGRVIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 188
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D + N+ RGF F+ F E+ V ++L K ++G++ EI
Sbjct: 189 LPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKCEI 230
Score = 132 (51.5 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + T ++FG++G+I + D + RGF FIT+ + V KV+E
Sbjct: 159 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 218
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF 104
H ++G + EIK PK Q + +
Sbjct: 219 KFHTVSGSKCEIKVAQPKEVYQQQQY 244
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 57/163 (34%), Positives = 97/163 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D S V+KV++
Sbjct: 75 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLD 134
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ +
Sbjct: 135 QKEHRLDGRVIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 189
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D + N+ RGF F+ F E+ V ++L K ++G++ EI
Sbjct: 190 LPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKCEI 231
Score = 132 (51.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + T ++FG++G+I + D + RGF FIT+ + V KV+E
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF 104
H ++G + EIK PK Q + +
Sbjct: 220 KFHTVSGSKCEIKVAQPKEVYQQQQY 245
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 57/163 (34%), Positives = 97/163 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D S V+KV++
Sbjct: 75 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLD 134
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ +
Sbjct: 135 QKEHRLDGRVIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 189
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D + N+ RGF F+ F E+ V ++L K ++G++ EI
Sbjct: 190 LPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKCEI 231
Score = 132 (51.5 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + T ++FG++G+I + D + RGF FIT+ + V KV+E
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF 104
H ++G + EIK PK Q + +
Sbjct: 220 KFHTVSGSKCEIKVAQPKEVYQQQQY 245
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 55/148 (37%), Positives = 90/148 (60%)
Query: 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80
+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 81 -HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V ++
Sbjct: 61 EHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELP 116
Query: 140 RDHETNRSRGFGFVIFDSEEVVDEMLSK 167
D++TN+ RGF F+ F EE V +++ K
Sbjct: 117 MDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Score = 130 (50.8 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 37/121 (30%), Positives = 60/121 (49%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL DT ++FG +G++ + D T + RGF FIT+ + V K++E
Sbjct: 85 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Query: 80 T-HIINGKQVEIKRTIPKGS-GQSKDFKTKKIFVG------GIPSSVSEDELKNFFSK-Y 130
H + + EIK + K Q + + ++ FVG G PS N++++ Y
Sbjct: 145 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRARGRGGGPSQNWNQGYSNYWNQGY 204
Query: 131 G 131
G
Sbjct: 205 G 205
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 60/181 (33%), Positives = 103/181 (56%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
GSK + DG K+FIGGL DT+ ++ ++G++ D I D TG+ RG
Sbjct: 53 GSKINASKNQQDDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRG 108
Query: 62 FGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120
FGF+ + D + V+KV+E H ++GK ++ KR K + K+ KK+FVGG+ SE
Sbjct: 109 FGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA--KAL-KGKE-PPKKVFVGGLSPDTSE 164
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML-SKGNMIDMAGTQVE 179
+++K +F +G++ ++ D +TN RGF F+ + EE V ++L S+ + I +++
Sbjct: 165 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIK 224
Query: 180 I 180
+
Sbjct: 225 V 225
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 60/181 (33%), Positives = 103/181 (56%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
GSK + DG K+FIGGL DT+ ++ ++G++ D I D TG+ RG
Sbjct: 17 GSKINASKNQQDDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRG 72
Query: 62 FGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120
FGF+ + D + V+KV+E H ++GK ++ KR K + K+ KK+FVGG+ SE
Sbjct: 73 FGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA--KAL-KGKE-PPKKVFVGGLSPDTSE 128
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML-SKGNMIDMAGTQVE 179
+++K +F +G++ ++ D +TN RGF F+ + EE V ++L S+ + I +++
Sbjct: 129 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIK 188
Query: 180 I 180
+
Sbjct: 189 V 189
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 57/166 (34%), Positives = 98/166 (59%)
Query: 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKV 76
S K+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + VDKV
Sbjct: 49 SGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 108
Query: 77 IE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE 135
+E H ++GK ++ KR K + K+ KK+FVGG+ SE+++K +F +G++
Sbjct: 109 LELKEHKLDGKLIDPKRA--KAL-KGKE-PPKKVFVGGLSPDTSEEQIKEYFGAFGEIEN 164
Query: 136 HQIIRDHETNRSRGFGFVIFDSEEVVDEML-SKGNMIDMAGTQVEI 180
++ D +TN RGF F+ + EE V ++L S+ + I ++++
Sbjct: 165 IELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 210
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 57/166 (34%), Positives = 98/166 (59%)
Query: 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKV 76
S K+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + VDKV
Sbjct: 49 SGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 108
Query: 77 IE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE 135
+E H ++GK ++ KR K + K+ KK+FVGG+ SE+++K +F +G++
Sbjct: 109 LELKEHKLDGKLIDPKRA--KAL-KGKE-PPKKVFVGGLSPDTSEEQIKEYFGAFGEIEN 164
Query: 136 HQIIRDHETNRSRGFGFVIFDSEEVVDEML-SKGNMIDMAGTQVEI 180
++ D +TN RGF F+ + EE V ++L S+ + I ++++
Sbjct: 165 IELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKV 210
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 55/148 (37%), Positives = 84/148 (56%)
Query: 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-ED 79
+ IGGL +TT + +H K+G +TD V+M D T RGFGF+TY+ VD +
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 80 THIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+ +
Sbjct: 61 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 120
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEML 165
++ D ++ + RGF FV FD + VD+++
Sbjct: 121 VMEDRQSGKKRGFAFVTFDDHDTVDKIV 148
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 36/98 (36%), Positives = 56/98 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 76 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 135
Query: 65 ITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK++ ++ H IN E+K+ + K QS
Sbjct: 136 VTFDDHDTVDKIVFQEHHAINRHNCEVKKAVSKQEMQS 173
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 48/129 (37%), Positives = 88/129 (68%)
Query: 37 KHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIP 95
++FG++G+ + ++M+D T + RGFGF+T+ D + VDKV+ + H ++ K ++ K P
Sbjct: 5 EYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 64
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
+ + +TKKIFVGG+ + + +++K +F ++GKV + ++ D TNR RGFGFV F
Sbjct: 65 RRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 124
Query: 156 DSEEVVDEM 164
+SE++V+++
Sbjct: 125 ESEDIVEKV 133
Score = 170 (64.9 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
KIF+GGL +TT ++F ++G + D+++M D+ T + RGFGF+T+ +V+KV E
Sbjct: 77 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 79 DTHIINGKQVEIKRTIPK 96
H IN K VE K+ PK
Sbjct: 137 HFHEINNKMVECKKAQPK 154
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 55/163 (33%), Positives = 96/163 (58%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + + VD+V++
Sbjct: 45 GKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQ 104
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+Q++ KR + K KKIFVGG+ +E++++ +F +G++ +
Sbjct: 105 QKEHRLDGRQIDPKRAMA-----IKKEPVKKIFVGGLNPETTEEKIREYFGSFGEIETIE 159
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D +T++ RGF F+ F E V ++L K ++ G++ EI
Sbjct: 160 LPTDPKTSKRRGFVFITFKEEFAVKKILEK-KYHNVCGSKCEI 201
Score = 143 (55.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL +TT ++FG +G+I + D T + RGF FIT+ + V K++E
Sbjct: 130 KIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGG 113
H + G + EIK PK Q + F + GG
Sbjct: 190 KYHNVCGSKCEIKIAQPKEIYQQQQFGARGGGFGG 224
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 56/163 (34%), Positives = 97/163 (59%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL DT+ +F K+G++ D I TG+ +GFGFI + D + V+KV++
Sbjct: 64 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLD 123
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ +
Sbjct: 124 QKEHRLDGRVIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIE 178
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D +TN+ RGF F+ F EE V ++L K ++G++ EI
Sbjct: 179 LPMDPKTNKRRGFVFITFKEEEPVKKVLEK-KFHTISGSKCEI 220
Score = 141 (54.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL + T ++FG++G+I + D T + RGF FIT+ + V KV+E
Sbjct: 149 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEK 208
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDF 104
H I+G + EIK PK Q + +
Sbjct: 209 KFHTISGSKCEIKVAQPKEVYQQQQY 234
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 57/149 (38%), Positives = 85/149 (57%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + HF ++G +TD V+M D T + RGFGF+TY VD +
Sbjct: 24 KLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAMNA 82
Query: 80 T-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+
Sbjct: 83 RPQKMDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 142
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+I+ D + + RGF FV FD + VD+++
Sbjct: 143 EIMTDRGSGKKRGFAFVTFDDHDSVDKIV 171
Score = 160 (61.4 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 99 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 158
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H NG E+++ + K
Sbjct: 159 VTFDDHDSVDKIVIQKYHTGNGHNCEVRKALSK 191
Score = 118 (46.6 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 94 IPKGSGQS-KDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFG 151
+P QS K+ + +K+F+GG+ +++ L++ F ++G +L ++ D T RSRGFG
Sbjct: 8 LPSCLNQSPKELEQLRKLFIGGLSFETTDESLRSHFEQWG-MLTDCVVMDPNTKRSRGFG 66
Query: 152 FVIFDSEEVVDEMLS 166
FV + + E VD ++
Sbjct: 67 FVTYTTVEEVDAAMN 81
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 58/157 (36%), Positives = 87/157 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G + D V+M+D T RGFGF
Sbjct: 2 SKSESPIEPEQLR--KLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGF 59
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDE 122
+TYA VD +H ++G+ VE KR + + Q +KIFVGGI E
Sbjct: 60 VTYATVKEVDAA--RSHKVDGRVVEPKRAVSREDSQRPGAHLTVRKIFVGGIKEDTEEHH 117
Query: 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEE 159
L+++F +YGK+ +I+ D + + RGF V FD +
Sbjct: 118 LRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHD 154
Score = 145 (56.1 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF
Sbjct: 88 SREDSQRPGAHLTVRKIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFAS 147
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRTIPK 96
+T+ D VI+ +I+NG E+++ + K
Sbjct: 148 VTFDDHDKDKIVIQKYYIVNGHNCEVRKALSK 179
Score = 112 (44.5 bits), Expect = 0.00016, P = 0.00016
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ + + L++ F ++G + + ++RD T SRGFGFV + + + VD +
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVDA--A 71
Query: 167 KGNMIDMAGTQVE 179
+ + +D G VE
Sbjct: 72 RSHKVD--GRVVE 82
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 55/148 (37%), Positives = 84/148 (56%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + HF ++G TD V+M+D T + RG GF+ YA VD +
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNA 74
Query: 80 THIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+ +
Sbjct: 75 RPHVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 134
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEML 165
I+ D + + +GF FV FD + VD+++
Sbjct: 135 IMTDRGSGK-KGFAFVTFDDHDSVDKIV 161
Score = 156 (60.0 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 39/115 (33%), Positives = 59/115 (51%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ +GF F
Sbjct: 90 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-KGFAF 148
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK-----GSGQSKDFKTKKIFVGG 113
+T+ D VDK VI+ H +NG E+++ + K S +D F GG
Sbjct: 149 VTFDDHDSVDKIVIQKYHPVNGHSCEVRKALSKQEMASASSTQRDLSGSGNFGGG 203
Score = 118 (46.6 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +E+ L++ F ++G + ++RD T RSRG GF+++ + E VD ++
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNA 74
Query: 168 GNMIDMAGTQVE 179
+D G VE
Sbjct: 75 RPHVD--GRVVE 84
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 53/149 (35%), Positives = 90/149 (60%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D + V+KV++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H ++G+ ++ K K KD KKIFVGG+ +E++++ +F ++G++ ++
Sbjct: 61 KEHRLDGRVIDPK----KAMAMKKD-PVKKIFVGGLNPEATEEKIREYFGEFGEIEAIEL 115
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
D ++N+ RGF F+ F EE V ++L K
Sbjct: 116 PMDPKSNKRRGFVFITFKEEEPVKKVLEK 144
Score = 137 (53.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 27/66 (40%), Positives = 45/66 (68%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS- 166
K+FVGG+ S+ +LK++F+K+G+V++ I D T RSRGFGF++F V+++L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 167 KGNMID 172
K + +D
Sbjct: 61 KEHRLD 66
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 56/149 (37%), Positives = 85/149 (57%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT + HF ++G +TD V+M+D T + RGFGF+TYA VD +
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 80 T-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + + KKIFVG E L+++F +YGK+
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSRRPGAHLTVKKIFVG---EDTEEHHLRDYFEQYGKIEVI 124
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+I+ D + + RGF FV FD + VD+++
Sbjct: 125 EIMTDRGSGKKRGFAFVTFDDHDSVDKIV 153
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+G +DT +F +YG I IM DR +G+ RGF F
Sbjct: 84 SREDSRRPGAHLTVKKIFVG---EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 140
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 141 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 173
Score = 124 (48.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLS 166
K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD M +
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 167 KGNMIDMAGTQVE 179
+ + +D G VE
Sbjct: 68 RPHKVD--GRVVE 78
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 53/147 (36%), Positives = 86/147 (58%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL T+ + HF +G +TD V++ + T + R FGF+TY++ D +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 80 T-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
+ H ++G VE+KR + + + K KK+FVGG+ V+E +L FS++G V +
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKA 127
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE 163
+II D ++ + RGFGFV F S + D+
Sbjct: 128 EIIADKQSGKKRGFGFVYFQSHDAADK 154
Score = 162 (62.1 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 31/93 (33%), Positives = 51/93 (54%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G A K+F+GGL D +HF ++G + + I+ D+ +G+ RGFGF
Sbjct: 84 SREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGF 143
Query: 65 ITYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 96
+ + DK + H I G +VE+K+ +PK
Sbjct: 144 VYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
Score = 107 (42.7 bits), Expect = 0.00071, P = 0.00071
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLS 166
K+F+GG+ SE L+ F +G + + ++ + +T RSR FGFV + + E D M +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 167 KGNMIDMAGTQVEI 180
+ +D G VE+
Sbjct: 68 SPHAVD--GNTVEL 79
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 54/152 (35%), Positives = 85/152 (55%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL + T + +HF K+G +TD V+M+D T + R F F+TY+ VD +
Sbjct: 14 KLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCA 73
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 74 QPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTM 133
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+++ D + + R FV FD + VD+++ +G
Sbjct: 134 EVMEDRLSGKERLL-FVTFDDHDTVDKIVGRG 164
Score = 124 (48.7 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ R F
Sbjct: 90 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLSGKERLL-F 148
Query: 65 ITYADPSVVDKVI 77
+T+ D VDK++
Sbjct: 149 VTFDDHDTVDKIV 161
Score = 120 (47.3 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
+G + + +K+F+GG+ ++D L+ F K+G + + ++RD +T RSR F FV +
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTY 61
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ VD M ++ + +D G VE
Sbjct: 62 SCVKEVDAAMCAQPHNVD--GRVVE 84
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 52/147 (35%), Positives = 86/147 (58%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL T+ + HF +G +TD V++ + T + R FGF+TY++ D +
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 80 T-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
+ H ++G VE+KR + + + K KK+FVGG+ V+E +L FS++G V +
Sbjct: 73 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 132
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE 163
+II D ++ + RGFGFV F + + D+
Sbjct: 133 EIIADKQSGKKRGFGFVYFQNHDAADK 159
Score = 164 (62.8 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 31/93 (33%), Positives = 52/93 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G A K+F+GGL D +HF ++G + + I+ D+ +G+ RGFGF
Sbjct: 89 SREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGF 148
Query: 65 ITYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 96
+ + + DK + H I G +VE+K+ +PK
Sbjct: 149 VYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPK 181
Score = 107 (42.7 bits), Expect = 0.00073, P = 0.00073
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLS 166
K+F+GG+ SE L+ F +G + + ++ + +T RSR FGFV + + E D M +
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 167 KGNMIDMAGTQVEI 180
+ +D G VE+
Sbjct: 73 SPHAVD--GNTVEL 84
Score = 38 (18.4 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 112 GGIPSSVSEDELKNFFSKYGKVLEHQ 137
GG SS + N F +G +HQ
Sbjct: 242 GGGGSSYGGSDYGNGFGGFGSYSQHQ 267
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 52/147 (35%), Positives = 86/147 (58%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL T+ + HF +G +TD V++ + T + R FGF+TY++ D +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 80 T-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
+ H ++G VE+KR + + + K KK+FVGG+ V+E +L FS++G V +
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE 163
+II D ++ + RGFGFV F + + D+
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADK 154
Score = 164 (62.8 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 31/93 (33%), Positives = 52/93 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G A K+F+GGL D +HF ++G + + I+ D+ +G+ RGFGF
Sbjct: 84 SREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGF 143
Query: 65 ITYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 96
+ + + DK + H I G +VE+K+ +PK
Sbjct: 144 VYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
Score = 107 (42.7 bits), Expect = 0.00073, P = 0.00073
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLS 166
K+F+GG+ SE L+ F +G + + ++ + +T RSR FGFV + + E D M +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 167 KGNMIDMAGTQVEI 180
+ +D G VE+
Sbjct: 68 SPHAVD--GNTVEL 79
Score = 38 (18.4 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 112 GGIPSSVSEDELKNFFSKYGKVLEHQ 137
GG SS + N F +G +HQ
Sbjct: 242 GGGGSSYGGSDYGNGFGGFGSYSQHQ 267
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 52/147 (35%), Positives = 86/147 (58%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL T+ + HF +G +TD V++ + T + R FGF+TY++ D +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 80 T-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
+ H ++G VE+KR + + + K KK+FVGG+ V+E +L FS++G V +
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE 163
+II D ++ + RGFGFV F + + D+
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADK 154
Score = 164 (62.8 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 31/93 (33%), Positives = 52/93 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G A K+F+GGL D +HF ++G + + I+ D+ +G+ RGFGF
Sbjct: 84 SREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGF 143
Query: 65 ITYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 96
+ + + DK + H I G +VE+K+ +PK
Sbjct: 144 VYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
Score = 107 (42.7 bits), Expect = 0.00071, P = 0.00071
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLS 166
K+F+GG+ SE L+ F +G + + ++ + +T RSR FGFV + + E D M +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 167 KGNMIDMAGTQVEI 180
+ +D G VE+
Sbjct: 68 SPHAVD--GNTVEL 79
Score = 38 (18.4 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 112 GGIPSSVSEDELKNFFSKYGKVLEHQ 137
GG SS + N F +G +HQ
Sbjct: 237 GGGGSSYGGSDYGNGFGGFGSYSQHQ 262
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 52/147 (35%), Positives = 86/147 (58%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL T+ + HF +G +TD V++ + T + R FGF+TY++ D +
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 80 T-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
+ H ++G VE+KR + + + K KK+FVGG+ V+E +L FS++G V +
Sbjct: 73 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 132
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE 163
+II D ++ + RGFGFV F + + D+
Sbjct: 133 EIIADKQSGKKRGFGFVYFQNHDAADK 159
Score = 164 (62.8 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 31/93 (33%), Positives = 52/93 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G A K+F+GGL D +HF ++G + + I+ D+ +G+ RGFGF
Sbjct: 89 SREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGF 148
Query: 65 ITYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 96
+ + + DK + H I G +VE+K+ +PK
Sbjct: 149 VYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPK 181
Score = 107 (42.7 bits), Expect = 0.00075, P = 0.00075
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLS 166
K+F+GG+ SE L+ F +G + + ++ + +T RSR FGFV + + E D M +
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 167 KGNMIDMAGTQVEI 180
+ +D G VE+
Sbjct: 73 SPHAVD--GNTVEL 84
Score = 38 (18.4 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 112 GGIPSSVSEDELKNFFSKYGKVLEHQ 137
GG SS + N F +G +HQ
Sbjct: 240 GGGGSSYGGSDYGNGFGGFGSYSQHQ 265
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 62/165 (37%), Positives = 88/165 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FI GL TT + H + G + D V+M+D T RGFGF
Sbjct: 2 SKSESPKEPEQL--WKLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
TYA VD V+ H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 TTYATREDVDAVMNARPHKMDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKN-FFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
LK+ FF +Y K+ +I+ D + + RGF FV FD + VD+++
Sbjct: 120 HLKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIV 164
Score = 148 (57.2 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHF-GKYGDITDSVIMKDRYTGQPRGFG 63
S+ D+ G + KIF+GG+ +DT +F +Y I IM DR +G+ RGF
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLKDYFFEQYEKIEVIEIMTDRGSGKKRGFA 150
Query: 64 FITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
F+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 151 FVTFDDHDFVDKIVIQKCHPVNGHDHEVRKALSK 184
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 58/164 (35%), Positives = 97/164 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +T + ++ ++G +TD V+++D + + RGFGF+ ++ + VD +
Sbjct: 22 KLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKG-SGQ-SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ V KR +P+ SG+ TKK+FVGGI +E L+++F +YG +
Sbjct: 82 RPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDAI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVE 179
+IIR ++ R FGFV FD + VD++ L K + I+ Q+E
Sbjct: 142 EIIR--QSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLE 183
Score = 157 (60.3 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 33/84 (39%), Positives = 55/84 (65%)
Query: 92 RTIP--KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRG 149
+++P K +S+ F+ K+F+GG+ S E+ L+N++ ++GK+ + +IRD + RSRG
Sbjct: 6 KSVPLKKKKRESEQFR--KLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRG 63
Query: 150 FGFVIFDSEEVVDE-MLSKGNMID 172
FGFVIF S VD M ++ + ID
Sbjct: 64 FGFVIFSSVAEVDAAMAARPHSID 87
Score = 140 (54.3 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 35/118 (29%), Positives = 62/118 (52%)
Query: 4 KSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFG 63
+ +S P G + K+F+GG+ +DTT +F +YG I I+ R +G+ FG
Sbjct: 99 REESGKP--GACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDAIEII--RQSGRKTAFG 154
Query: 64 FITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQ----SKDFKTKKIFVGGIPS 116
F+T+ D VDK++ + H ING ++++ + + Q S+ + + + G IPS
Sbjct: 155 FVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQGMQEVQSSRRGRGRHVGFGDIPS 212
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 58/164 (35%), Positives = 97/164 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +T + ++ ++G +TD V+++D + + RGFGF+ ++ + VD +
Sbjct: 22 KLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPKG-SGQ-SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ V KR +P+ SG+ TKK+FVGGI +E L+++F +YG +
Sbjct: 82 RPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDAI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVE 179
+IIR ++ R FGFV FD + VD++ L K + I+ Q+E
Sbjct: 142 EIIR--QSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLE 183
Score = 157 (60.3 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 33/84 (39%), Positives = 55/84 (65%)
Query: 92 RTIP--KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRG 149
+++P K +S+ F+ K+F+GG+ S E+ L+N++ ++GK+ + +IRD + RSRG
Sbjct: 6 KSVPLKKKKRESEQFR--KLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRG 63
Query: 150 FGFVIFDSEEVVDE-MLSKGNMID 172
FGFVIF S VD M ++ + ID
Sbjct: 64 FGFVIFSSVAEVDAAMAARPHSID 87
Score = 140 (54.3 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 35/118 (29%), Positives = 62/118 (52%)
Query: 4 KSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFG 63
+ +S P G + K+F+GG+ +DTT +F +YG I I+ R +G+ FG
Sbjct: 99 REESGKP--GACVTTKKLFVGGIKEDTTERHLRDYFERYGTIDAIEII--RQSGRKTAFG 154
Query: 64 FITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQ----SKDFKTKKIFVGGIPS 116
F+T+ D VDK++ + H ING ++++ + + Q S+ + + + G IPS
Sbjct: 155 FVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQGMQEVQSSRRRRGRHVGFGDIPS 212
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 55/152 (36%), Positives = 87/152 (57%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K+ +TD V+M+D T + RGFGF+ Y+ VD +
Sbjct: 14 KLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFV-YSCVEEVDAAMCA 71
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G VE KR I + KKIFVGGI E L+++F +YG +
Sbjct: 72 RPHKVDGHVVEPKRAISREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYF-EYGNIKTI 130
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+++ D ++ + RGF F+ FD + VD+++ +G
Sbjct: 131 EVVEDRQSGKKRGFAFLTFDDHDTVDKIVGRG 162
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G KIF+GG+ +DT +F +YG+I +++DR +G+ RGF F
Sbjct: 88 SREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYF-EYGNIKTIEVVEDRQSGKKRGFAF 146
Query: 65 ITYADPSVVDKVI 77
+T+ D VDK++
Sbjct: 147 LTFDDHDTVDKIV 159
Score = 119 (46.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
+G + + +K+F+GG+ ++D L+ F K+ + + ++RD +T RSRGFGFV
Sbjct: 2 EGHDPKEPEQRRKLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFVYS 60
Query: 156 DSEEVVDEMLSKGNMID 172
EEV M ++ + +D
Sbjct: 61 CVEEVDAAMCARPHKVD 77
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 57/150 (38%), Positives = 82/150 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K G +TD V+M+D T RGFGF+T + VD +
Sbjct: 37 KLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCA 96
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK
Sbjct: 97 RPHKVDGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGKT--- 153
Query: 137 QIIRDHETN-RSRGFGFVIFDSEEVVDEML 165
+ I + RGF FV FD ++ VD+++
Sbjct: 154 ETIEGRQAEWEKRGFAFVTFDDQDTVDKIV 183
Score = 145 (56.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 33/93 (35%), Positives = 50/93 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G KIF+GG+ +DT +F KYG T+++ + + RGF F
Sbjct: 113 SREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGK-TETIEGRQA-EWEKRGFAF 170
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK V++ H ING E+KR + K
Sbjct: 171 VTFDDQDTVDKIVVQKHHTINGHNCEVKRALSK 203
Score = 125 (49.1 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 31/96 (32%), Positives = 53/96 (55%)
Query: 85 GKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHET 144
GK + +R + +G + + +K+F+GG+ ++D L+ F K G + + ++RD +T
Sbjct: 15 GKGRKKERRM-EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQT 73
Query: 145 NRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
SRGFGFV E VD M ++ + +D G VE
Sbjct: 74 KHSRGFGFVTSSCVEEVDAAMCARPHKVD--GRVVE 107
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 57/150 (38%), Positives = 82/150 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +TT + +HF K G +TD V+M+D T RGFGF+T + VD +
Sbjct: 37 KLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCA 96
Query: 79 DTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK
Sbjct: 97 RPHKVDGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGKT--- 153
Query: 137 QIIRDHETN-RSRGFGFVIFDSEEVVDEML 165
+ I + RGF FV FD ++ VD+++
Sbjct: 154 ETIEGRQAEWEKRGFAFVTFDDQDTVDKIV 183
Score = 145 (56.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 33/93 (35%), Positives = 50/93 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G KIF+GG+ +DT +F KYG T+++ + + RGF F
Sbjct: 113 SREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGK-TETIEGRQA-EWEKRGFAF 170
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK V++ H ING E+KR + K
Sbjct: 171 VTFDDQDTVDKIVVQKHHTINGHNCEVKRALSK 203
Score = 125 (49.1 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 31/96 (32%), Positives = 53/96 (55%)
Query: 85 GKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHET 144
GK + +R + +G + + +K+F+GG+ ++D L+ F K G + + ++RD +T
Sbjct: 15 GKGRKKERRM-EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQT 73
Query: 145 NRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVE 179
SRGFGFV E VD M ++ + +D G VE
Sbjct: 74 KHSRGFGFVTSSCVEEVDAAMCARPHKVD--GRVVE 107
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 56/157 (35%), Positives = 88/157 (56%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFI-TYADPSVVDKVI- 77
K+FIG L +TT + +HF K+G + D V+M+D + R FGF+ TY+ VD +
Sbjct: 19 KLFIGCLSFETTDDSLREHFEKWGTL-DCVVMRDLQIKRSRSFGFVSTYSCVKEVDAAMC 77
Query: 78 EDTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE 135
H ++G VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 78 ARPHKVDGHVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIEI 137
Query: 136 HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172
+++ D ++ + RGF FV FD + VD+++ K + I+
Sbjct: 138 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQKYHTIN 174
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 37/97 (38%), Positives = 56/97 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 95 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAF 154
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK+++ H ING E+K+ + K QS
Sbjct: 155 VTFDDHDTVDKIVQKYHTINGHNYEVKKAVSKQEMQS 191
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 54/148 (36%), Positives = 91/148 (61%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
P K FIGG+P+ T ++F +YG + VI +D T + RGF F+T A ++++
Sbjct: 113 PFKFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERIL 172
Query: 78 EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
DTH +NGK+V+++ + + D + +KIFVGG+ ++D L+++FS +G++ Q
Sbjct: 173 RDTHELNGKRVDVRE---ENNTTPSDIQ-RKIFVGGLNYYWTKDTLESYFSTFGEIDVVQ 228
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEML 165
I+ D + RSR FGFV+F +E V ++L
Sbjct: 229 IVLD-SSGRSRCFGFVVFSNENSVAKVL 255
Score = 116 (45.9 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL T T +F +G+I I+ D +G+ R FGF+ +++ + V KV++
Sbjct: 199 KIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLDS-SGRSRCFGFVVFSNENSVAKVLKH 257
Query: 80 T-HIINGKQVEIKRTIPK 96
H I K VE+++ PK
Sbjct: 258 KRHKIYDKMVEVRKAEPK 275
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 54/148 (36%), Positives = 91/148 (61%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
P K FIGG+P+ T ++F +YG + VI +D T + RGF F+T A ++++
Sbjct: 113 PFKFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERIL 172
Query: 78 EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
DTH +NGK+V+++ + + D + +KIFVGG+ ++D L+++FS +G++ Q
Sbjct: 173 RDTHELNGKRVDVRE---ENNTTPSDIQ-RKIFVGGLNYYWTKDTLESYFSTFGEIDVVQ 228
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEML 165
I+ D + RSR FGFV+F +E V ++L
Sbjct: 229 IVLD-SSGRSRCFGFVVFSNENSVAKVL 255
Score = 116 (45.9 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL T T +F +G+I I+ D +G+ R FGF+ +++ + V KV++
Sbjct: 199 KIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLDS-SGRSRCFGFVVFSNENSVAKVLKH 257
Query: 80 T-HIINGKQVEIKRTIPK 96
H I K VE+++ PK
Sbjct: 258 KRHKIYDKMVEVRKAEPK 275
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 57/164 (34%), Positives = 92/164 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FI GL +TT + HF ++G +T V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQL--WKLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+ +A VD + + +NG+ +E KR + + Q + KKIFVGGI E
Sbjct: 60 VMFATVEEVDAAMNARPNKVNGRVLEPKRFVSREDSQRPAAYLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
E ++F +YGK +++ D + + RGF FV FD+ + VD+++
Sbjct: 120 E--DYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIV 161
Score = 139 (54.0 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 43/148 (29%), Positives = 68/148 (45%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ + KIF+GG+ +DT +F +YG +M D+ +G+ RGF F
Sbjct: 91 SREDSQRPAAYLTVKKIFVGGIKEDTE--EHEDYFEQYGKFEVIEVMTDQGSGKKRGFAF 148
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+T+ + VD+ VI+ H +NG E+++ + K S F + G S
Sbjct: 149 VTFDNHDSVDQIVIQKYHTVNGHSCEVRKALLKQEMASASFSQR-----GQSGS------ 197
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFG 151
NF G DH+ + SRGFG
Sbjct: 198 GNFGGGRGGGFGGNDNFDHDNHWSRGFG 225
Score = 116 (45.9 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLS 166
K+F+ G+ +++ L++ F ++G + ++RD T RSRGFGFV+F + E VD M +
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74
Query: 167 KGNMID 172
+ N ++
Sbjct: 75 RPNKVN 80
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 245 (91.3 bits), Expect = 8.2e-21, P = 8.2e-21
Identities = 52/161 (32%), Positives = 88/161 (54%)
Query: 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA 68
N T D S + + LP++ T F FG GDI +++D+ TGQ G+GF+ Y+
Sbjct: 31 NGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 69 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFF 127
DP+ DK I + +NG +++ K + S + ++V G+P ++S+ E++ F
Sbjct: 89 DPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 128 SKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
S+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 146 SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI-KG 185
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 245 (91.3 bits), Expect = 8.2e-21, P = 8.2e-21
Identities = 52/161 (32%), Positives = 88/161 (54%)
Query: 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA 68
N T D S + + LP++ T F FG GDI +++D+ TGQ G+GF+ Y+
Sbjct: 31 NGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 69 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFF 127
DP+ DK I + +NG +++ K + S + ++V G+P ++S+ E++ F
Sbjct: 89 DPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 128 SKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
S+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 146 SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI-KG 185
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 58/163 (35%), Positives = 89/163 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL +T + +HF K G +TD V+M+D T RGFGF+TY+ VD +
Sbjct: 33 KLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAMCA 92
Query: 79 DTHIINGKQVEIKRTIPKGSGQS--KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE K+ + + KK FVGGI E LK++F KYGK+ E
Sbjct: 93 WLHKVDGRVVEPKKAVSREDSVKLGAHLMVKKTFVGGIKEDTEEYNLKDYFEKYGKI-ET 151
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179
+ + + ++ R RGF F IF +V ++ K + I+ +V+
Sbjct: 152 EGMENRQSGR-RGFAFAIFGDHDVDKIVVQKHHTINGHNCEVK 193
Score = 135 (52.6 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G K F+GG+ +DT +F KYG I ++ M++R +G+ RGF F
Sbjct: 109 SREDSVKLGAHLMVKKTFVGGIKEDTEEYNLKDYFEKYGKI-ETEGMENRQSGR-RGFAF 166
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRTIPK 96
+ D V V++ H ING E+K+ + K
Sbjct: 167 AIFGDHDVDKIVVQKHHTINGHNCEVKKALSK 198
Score = 124 (48.7 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
+G+ + + +K+F+GG+ ++D L+ F K G + + ++RD +T SRGFGFV +
Sbjct: 21 RGADPKEPEQLRKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTY 80
Query: 156 DSEEVVD 162
E VD
Sbjct: 81 SCVEEVD 87
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 53/166 (31%), Positives = 88/166 (53%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
S++ +N H+ G KIF+GG+ + + HF +YG++ + + DR G+ RGF
Sbjct: 13 SETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGF 72
Query: 63 GFITYADPSVVDKVIEDTH-IINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSED 121
F+ + + I GK VE+K P +K + KK+FVGG+PS SE
Sbjct: 73 AFVEFTTGEGCKLALAAREQTIKGKSVEVK---P-----AKSRENKKVFVGGLPSDYSEQ 124
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
+L++ F ++GKV + + D +T R F F++F+ EE D+ S+
Sbjct: 125 DLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ 170
Score = 123 (48.4 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 27/95 (28%), Positives = 43/95 (45%)
Query: 4 KSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFG 63
K KS K+F+GGLP D + HF ++G + D D+ T R F
Sbjct: 95 KGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154
Query: 64 FITYADPSVVDKVIEDTHIING-KQVEIKRTIPKG 97
FI + + DK T G ++ ++K+ +P+G
Sbjct: 155 FIVFEEEESADKASSQTKQTFGTRECDVKKAVPQG 189
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 53/149 (35%), Positives = 81/149 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + HF ++ +TD V+M+D + + RGFG I YA VD +
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 80 T-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE K + + KKIFVGG E L+ +F +YGK+
Sbjct: 61 RPHKVDGRVVEPKVAVSREDSHRPGAHLTVKKIFVGGSKEDTEEHHLRVYFEQYGKIEVI 120
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+I+ D + + RGF FV FD ++ VD ++
Sbjct: 121 EIMTDIGSGKKRGFAFVTFDDQDSVDNIV 149
Score = 147 (56.8 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 33/93 (35%), Positives = 50/93 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG +DT +F +YG I IM D +G+ RGF F
Sbjct: 77 SREDSHRPGAHLTVKKIFVGGSKEDTEEHHLRVYFEQYGKIEVIEIMTDIGSGKKRGFAF 136
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VD VI+ H +NG E+++ + K
Sbjct: 137 VTFDDQDSVDNIVIQKYHTVNGHNCEVRKALLK 169
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 243 (90.6 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 52/161 (32%), Positives = 88/161 (54%)
Query: 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA 68
N T D S + + LP++ T F FG GDI +++D+ TGQ G+GF+ Y+
Sbjct: 31 NGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 69 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFF 127
DP+ DK I + +NG +++ K + S + ++V G+P ++S+ E++ F
Sbjct: 89 DPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 128 SKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
S+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 146 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 185
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 243 (90.6 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 52/161 (32%), Positives = 88/161 (54%)
Query: 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA 68
N T D S + + LP++ T F FG GDI +++D+ TGQ G+GF+ Y+
Sbjct: 31 NGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 69 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFF 127
DP+ DK I + +NG +++ K + S + ++V G+P ++S+ E++ F
Sbjct: 89 DPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 128 SKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
S+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 146 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 185
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 243 (90.6 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 52/161 (32%), Positives = 88/161 (54%)
Query: 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA 68
N T D S + + LP++ T F FG GDI +++D+ TGQ G+GF+ Y+
Sbjct: 31 NGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 69 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFF 127
DP+ DK I + +NG +++ K + S + ++V G+P ++S+ E++ F
Sbjct: 89 DPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 128 SKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
S+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 146 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 185
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 243 (90.6 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 52/161 (32%), Positives = 88/161 (54%)
Query: 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA 68
N T D S + + LP++ T F FG GDI +++D+ TGQ G+GF+ Y+
Sbjct: 31 NGATDD--SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYS 88
Query: 69 DPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFF 127
DP+ DK I + +NG +++ K + S + ++V G+P ++S+ E++ F
Sbjct: 89 DPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 128 SKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
S+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 146 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 185
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 51/167 (30%), Positives = 93/167 (55%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
K+F+G LP D F + G + S ++ +R T Q RGFGF+T + +K +E
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 79 -DTHIINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKV 133
++ +NG+++ + R P+GS + + +I+VG +P V L+ FS++GKV
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV 233
Query: 134 LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
++ +++ D ET RSRGFGFV +E V+ ++ + ++ G +++
Sbjct: 234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280
Score = 120 (47.3 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/100 (28%), Positives = 50/100 (50%)
Query: 83 INGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIR 140
I G V + + G G + + K+FVG +P V L F + G V ++I
Sbjct: 87 IGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIY 146
Query: 141 DHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+ +T++SRGFGFV + E ++ + K N ++ G ++ +
Sbjct: 147 NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTV 186
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 53/148 (35%), Positives = 84/148 (56%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F GGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD+ +D
Sbjct: 22 KLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVDR--KD 79
Query: 80 THIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H +++ R + + Q+ KKIFVGGI E L+++ +YGK+ +
Sbjct: 80 -HTRWMEELWNLRAVSREDSQTPGAHLTVKKIFVGGIKEDTEEHHLRDYSEQYGKIEVVE 138
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEML 165
I+ D + + GF FV FD + VD+++
Sbjct: 139 IMTDRGSGKKGGFAFVTFDDHDSVDKIV 166
Score = 154 (59.3 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 35/104 (33%), Positives = 54/104 (51%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT + +YG I IM DR +G+ GF F
Sbjct: 94 SREDSQTPGAHLTVKKIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAF 153
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQSKDFKTK 107
+T+ D VDK VI+ H +NG E+++ + K S F +
Sbjct: 154 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASFSQR 197
Score = 117 (46.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD 162
+K+F GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + E VD
Sbjct: 21 RKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVD 76
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 54/149 (36%), Positives = 80/149 (53%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT + HF ++ +TD V M+D T + RGFGF+TY VD +
Sbjct: 6 KLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMNA 65
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G VE KR + + QS K+I VGGI E L+++F YGK+
Sbjct: 66 RPHKVDGSFVEPKRAVSREDSQSPGAHLTVKEISVGGIKEDTEEHHLRDYFEHYGKIEVI 125
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+I+ D + + F FV FD + VD+++
Sbjct: 126 EIMTDRGSGKKE-FAFVTFDDHDSVDKIV 153
Score = 122 (48.0 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 36/116 (31%), Positives = 54/116 (46%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + +I +GG+ +DT +F YG I IM DR +G+ + F F
Sbjct: 82 SREDSQSPGAHLTVKEISVGGIKEDTEEHHLRDYFEHYGKIEVIEIMTDRGSGK-KEFAF 140
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEI----KRTIPKGSGQSKDFKTKKIFVGGIP 115
+T+ D VDK VI+ H +NG E K+ + S + F GG P
Sbjct: 141 VTFDDHDSVDKIVIQKYHTVNGHNCETVALSKQEMASASSSQRGRSGSGNFGGGGP 196
Score = 112 (44.5 bits), Expect = 0.00014, P = 0.00014
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-ML 165
+K+F+GG+ + + L++ F ++ + + +RD T RSRGFGFV + + E VD M
Sbjct: 5 RKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMN 64
Query: 166 SKGNMIDMAGTQVE 179
++ + +D G+ VE
Sbjct: 65 ARPHKVD--GSFVE 76
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 49/146 (33%), Positives = 82/146 (56%)
Query: 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80
+ IG T+ + HF +G +TD V++ + T + R FGF+TY++ D + +
Sbjct: 9 VLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 81 -HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G VE+KR + + + K KK+FVGG+ V+E +L FS++G V + +
Sbjct: 69 PHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAE 128
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDE 163
II D ++ + RGFGFV F S + D+
Sbjct: 129 IIADKQSGKKRGFGFVYFQSHDAADK 154
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 31/93 (33%), Positives = 51/93 (54%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G A K+F+GGL D +HF ++G + + I+ D+ +G+ RGFGF
Sbjct: 84 SREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGF 143
Query: 65 ITYADPSVVDKV-IEDTHIINGKQVEIKRTIPK 96
+ + DK + H I G +VE+K+ +PK
Sbjct: 144 VYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPK 176
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 46/119 (38%), Positives = 78/119 (65%)
Query: 17 SPG-KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK 75
SP K+FIGGL T+ + +F K+G+I + ++M+D T + RGFGF+T+ADP+ VDK
Sbjct: 14 SPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73
Query: 76 VI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKV 133
V+ + H ++ K ++ K P+ + +TKKIFVGG+ ++ +++K +F ++GKV
Sbjct: 74 VLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKV 132
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+ K+F+GG+ S D L+++FSK+G++ E ++RD T RSRGFGFV F VD++L
Sbjct: 16 SSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 75
Query: 166 SK 167
+
Sbjct: 76 GQ 77
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 52/148 (35%), Positives = 85/148 (57%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
++FIGGL +T + + F + G + D V+M+D P+ FGF+TY+ VD +
Sbjct: 8 RLFIGGLSFETIEDSLREGF-EMGTLADCVVMRD-----PQSFGFVTYSCVEEVDAAMCA 61
Query: 79 DTHIINGKQVEIKRTIPK-GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ VE KR + + S + T KIFVGGI E L+++F KYGK+ +
Sbjct: 62 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKIFVGGIKEDAEEYNLRDYFEKYGKIETIE 121
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEML 165
++ D ++ + RGF FV FD + VD+++
Sbjct: 122 VMEDRQSGKKRGFAFVTFDDHDTVDKIV 149
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 14 DGASPG-----KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA 68
D PG KIF+GG+ +D +F KYG I +M+DR +G+ RGF F+T+
Sbjct: 81 DSVKPGAHLTVKIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 140
Query: 69 DPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQS 101
D VDK++ + H ING E+++ + K QS
Sbjct: 141 DHDTVDKIVVNYHTINGHNCEVRKALSKQEMQS 173
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 239 (89.2 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 55/163 (33%), Positives = 87/163 (53%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIFIGGL TT T F ++G + D+V+++D + RGFGF+TY DP V+ V
Sbjct: 33 KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRA 92
Query: 80 T-HIINGKQVEIKRTIPK-----GSG----------QSKDFKTKKIFVGGIPSSVSEDEL 123
H I+ K VE K +P+ G G ++ +K+IF+GG+ E+ +
Sbjct: 93 RPHTIDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIV 152
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+ +FS++G V +++ D ET R R FGF+ F ++ L+
Sbjct: 153 REYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALA 195
Score = 125 (49.1 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF-DSEEVVDEML 165
+KIF+GG+ + + + L+ FFS++G V + ++RD +N SRGFGFV + D + V
Sbjct: 32 RKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQR 91
Query: 166 SKGNMID 172
++ + ID
Sbjct: 92 ARPHTID 98
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 54/163 (33%), Positives = 91/163 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+S++P + K+FIGGL +TT + F + G +TD V+ +D + RGFGF
Sbjct: 2 SESESPKEPEQLR--KLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDE 122
+TYA V++V H+ + + VE K I + Q KK+FVGGI E
Sbjct: 60 VTYA---TVEEVKGRPHV-DERVVEPKWAISREDSQRPGAHLPVKKVFVGGIKEDTEEHH 115
Query: 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YG++ +I+ D + + RGF F++FD + +D+++
Sbjct: 116 LRDYFEQYGRIEVIEIMTDQGSGK-RGFAFILFDDHDSIDKIV 157
Score = 141 (54.7 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 36/110 (32%), Positives = 57/110 (51%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G K+F+GG+ +DT +F +YG I IM D+ +G+ RGF F
Sbjct: 86 SREDSQRPGAHLPVKKVFVGGIKEDTEEHHLRDYFEQYGRIEVIEIMTDQGSGK-RGFAF 144
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGG 113
I + D +DK VI+ H NG E+++ + K S +++ F GG
Sbjct: 145 ILFDDHDSIDKIVIQKYHTGNGLNCEVRKALSKQEMASAS-SSQRDFGGG 193
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 234 (87.4 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 54/174 (31%), Positives = 90/174 (51%)
Query: 2 GSKSKSDN-P---HTGDGASPGK--IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRY 55
G S S N P TG K + + LP++ T F FG G+I +++D+
Sbjct: 28 GPSSNSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 87
Query: 56 TGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGI 114
TGQ G+GF+ Y DP +K I + +NG +++ K + S + ++V G+
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 144
Query: 115 PSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
P ++++ EL+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 145 PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 197
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 233 (87.1 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 51/164 (31%), Positives = 88/164 (53%)
Query: 7 SDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFIT 66
S N T D S + + LP++ T F FG G+I +++D+ TGQ G+GF+
Sbjct: 28 STNGATDD--SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVN 85
Query: 67 YADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKN 125
Y DP+ DK I + +NG +++ K + S + ++V G+P ++S+ +++
Sbjct: 86 YVDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQ 142
Query: 126 FFSKYGKVLEHQIIRDHET-NRSRGFGFVIFDSEEVVDEMLSKG 168
FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 143 LFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAI-KG 185
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 232 (86.7 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 12 TGDGASPGK--IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD 69
TG K + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y D
Sbjct: 35 TGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 94
Query: 70 PSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128
P +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS
Sbjct: 95 PKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFS 151
Query: 129 KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 152 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 190
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 58/166 (34%), Positives = 89/166 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++ + D K+FIGGL + T + H ++G +TD V+ +D T RGFGF
Sbjct: 2 SKSES--SKDPEQLRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGF 59
Query: 65 ITYADPSV--VDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVS 119
IT +V VD + H ++G+ VE KR + + Q KK FVGGI
Sbjct: 60 ITCTTATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKTFVGGIKEDTE 119
Query: 120 EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
E L+++F +YGK+ +I+ D + + R F FV FD + VD+++
Sbjct: 120 EHHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIV 164
Score = 142 (55.0 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 33/93 (35%), Positives = 50/93 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + K F+GG+ +DT +F +YG I IM D +G+ R F F
Sbjct: 93 SREDSQRPGAHLTVKKTFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAF 151
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+K+ + K
Sbjct: 152 VTFDDHDSVDKIVIQKYHTVNGHNCEVKKALSK 184
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 235 (87.8 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 53/171 (30%), Positives = 91/171 (53%)
Query: 3 SKSKS-DNP-HTGDGASPGK--IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQ 58
S S+S +P TG K + + LP++ T F FG G+I +++D+ TGQ
Sbjct: 68 SNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ 127
Query: 59 PRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSS 117
G+GF+ Y DP +K I + +NG +++ K + S + ++V G+P +
Sbjct: 128 SLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 184
Query: 118 VSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+++ EL+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 185 MTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAI-KG 234
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 232 (86.7 bits), Expect = 2.9e-19, P = 2.9e-19
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 12 TGDGASPGK--IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD 69
TG K + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y D
Sbjct: 37 TGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 96
Query: 70 PSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128
P +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS
Sbjct: 97 PKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFS 153
Query: 129 KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 192
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 232 (86.7 bits), Expect = 2.9e-19, P = 2.9e-19
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 12 TGDGASPGK--IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD 69
TG K + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y D
Sbjct: 37 TGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 96
Query: 70 PSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128
P +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS
Sbjct: 97 PKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFS 153
Query: 129 KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 192
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 50/165 (30%), Positives = 88/165 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S D+ +T D S + + LP++ T FG G+I +++D+ TGQ G+GF
Sbjct: 27 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 84
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL
Sbjct: 85 VNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI-KG 185
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 230 (86.0 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 50/165 (30%), Positives = 88/165 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S D+ +T D S + + LP++ T FG G+I +++D+ TGQ G+GF
Sbjct: 27 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 84
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL
Sbjct: 85 VNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI-KG 185
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 232 (86.7 bits), Expect = 3.3e-19, P = 3.3e-19
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 12 TGDGASPGK--IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD 69
TG K + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y D
Sbjct: 30 TGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 70 PSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128
P +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS
Sbjct: 90 PKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFS 146
Query: 129 KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 147 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 185
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 232 (86.7 bits), Expect = 3.3e-19, P = 3.3e-19
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 12 TGDGASPGK--IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD 69
TG K + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y D
Sbjct: 30 TGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89
Query: 70 PSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128
P +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS
Sbjct: 90 PKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFS 146
Query: 129 KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 147 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 185
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 232 (86.7 bits), Expect = 3.7e-19, P = 3.7e-19
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 12 TGDGASPGK--IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD 69
TG K + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y D
Sbjct: 37 TGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 96
Query: 70 PSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128
P +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS
Sbjct: 97 PKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFS 153
Query: 129 KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 154 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 192
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 232 (86.7 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 12 TGDGASPGK--IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD 69
TG K + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y D
Sbjct: 53 TGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 112
Query: 70 PSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128
P +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS
Sbjct: 113 PKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFS 169
Query: 129 KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 170 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 208
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 232 (86.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 12 TGDGASPGK--IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD 69
TG K + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y D
Sbjct: 41 TGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 100
Query: 70 PSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128
P +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS
Sbjct: 101 PKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFS 157
Query: 129 KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 158 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 196
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 232 (86.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 49/160 (30%), Positives = 85/160 (53%)
Query: 12 TGDGASPGK--IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD 69
TG K + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y D
Sbjct: 42 TGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 101
Query: 70 PSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128
P +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS
Sbjct: 102 PKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFS 158
Query: 129 KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 159 QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 197
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 231 (86.4 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 47/153 (30%), Positives = 83/153 (54%)
Query: 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKV 76
S + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y DP +K
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 77 IEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE 135
I + +NG +++ K + S + ++V G+P ++++ EL+ FS+YG+++
Sbjct: 109 I---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 136 HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+I+ D T SRG GF+ FD +E + KG
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 197
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 232 (86.7 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 50/165 (30%), Positives = 87/165 (52%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S D+ +T D S + + LP+ T FG G+I +++D+ TGQ G+GF
Sbjct: 55 SPIDSGNTED--SKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 112
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL
Sbjct: 113 VNYVDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 169
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 170 EQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAI-KG 213
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 230 (86.0 bits), Expect = 4.4e-19, P = 4.4e-19
Identities = 50/165 (30%), Positives = 88/165 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S D+ +T D S + + LP++ T FG G+I +++D+ TGQ G+GF
Sbjct: 27 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 84
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL
Sbjct: 85 VNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI-KG 185
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 230 (86.0 bits), Expect = 4.5e-19, P = 4.5e-19
Identities = 50/165 (30%), Positives = 88/165 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S D+ +T D S + + LP++ T FG G+I +++D+ TGQ G+GF
Sbjct: 27 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 84
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL
Sbjct: 85 VNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI-KG 185
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 231 (86.4 bits), Expect = 4.9e-19, P = 4.9e-19
Identities = 47/153 (30%), Positives = 83/153 (54%)
Query: 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKV 76
S + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y DP +K
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 77 IEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE 135
I + +NG +++ K + S + ++V G+P ++++ EL+ FS+YG+++
Sbjct: 104 I---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 136 HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+I+ D T SRG GF+ FD +E + KG
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 192
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 55/150 (36%), Positives = 83/150 (55%)
Query: 20 KIFIGGLPKDTTYATFN--KHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
K+F+GGL + T + + HF ++G +TD V+M+D T + RGFGF+TYA VD +
Sbjct: 15 KLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAAM 74
Query: 78 EDT-HIINGKQVEIKRTIPKGSGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLE 135
H + G+ VE KR K S + T KKIFVGG+ E L+++ + GK
Sbjct: 75 NARPHKVGGRAVEPKRAGSKDSQRPGAHLTMKKIFVGGVKEDTEEHRLRDYLEQNGKTEV 134
Query: 136 HQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+I D + + R F FV FD+ VD+++
Sbjct: 135 TEITTDRGSGK-RDFAFVTFDNS--VDKIV 161
Score = 119 (46.9 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELK--NFFSKYGKVLEHQIIRDHETNRSRGFGFV 153
K + + +K+FVGG+ + + L + F ++G + +H ++RD T RSRGFGFV
Sbjct: 3 KSESSKEPEQLQKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFV 62
Query: 154 IFDSEEVVDEMLS 166
+ + E VD ++
Sbjct: 63 TYATVEEVDAAMN 75
Score = 106 (42.4 bits), Expect = 0.00080, P = 0.00080
Identities = 30/95 (31%), Positives = 48/95 (50%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
GSK D+ G + KIF+GG+ +DT + + G + I DR +G+ R
Sbjct: 92 GSK---DSQRPGAHLTMKKIFVGGVKEDTEEHRLRDYLEQNGKTEVTEITTDRGSGK-RD 147
Query: 62 FGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPK 96
F F+T+ D SV VI+ +NG E+++ + K
Sbjct: 148 FAFVTF-DNSVDKIVIQKYSTVNGHNCEVRKALSK 181
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 47/128 (36%), Positives = 78/128 (60%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V ++
Sbjct: 158 KEHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
Query: 139 IRDHETNR 146
D++TN+
Sbjct: 214 PMDNKTNK 221
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 25/60 (41%), Positives = 43/60 (71%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ ++ +LK++FSK+G+V++ + D T RSRGFGFV+F E VD+++ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 231 (86.4 bits), Expect = 5.2e-19, P = 5.2e-19
Identities = 47/153 (30%), Positives = 83/153 (54%)
Query: 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKV 76
S + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y DP +K
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108
Query: 77 IEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE 135
I + +NG +++ K + S + ++V G+P ++++ EL+ FS+YG+++
Sbjct: 109 I---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 136 HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+I+ D T SRG GF+ FD +E + KG
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 197
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 57/160 (35%), Positives = 87/160 (54%)
Query: 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA 68
NP + S K+FIGGL +T+ + +HF ++ +T V+M D T + R FGF+TY+
Sbjct: 5 NPKEQEQLS--KLFIGGLSFETSDDSLREHFEQWDMLTHCVVM-DPQTKRSRVFGFVTYS 61
Query: 69 DPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKD-FKTKKIFVGGIPSSVSEDELKNF 126
VD + H ++G VE KR + S + KKIF+GGI E L+++
Sbjct: 62 CVKEVDAAMCARPHKVDGCVVEPKRPFREDSVKPVVCLLAKKIFIGGIKEDTEEHNLRDY 121
Query: 127 FSKYGKVLEHQIIR-DHETNRSRGFGFVIFDSEEVVDEML 165
F KYGK+ +I+ D ++ RGF FV FD VD+++
Sbjct: 122 FEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIV 161
Score = 152 (58.6 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDI-TDSVIMKDRYTGQPRGFGFITYADPSVVDK-VI 77
KIFIGG+ +DT +F KYG I T ++ +DR +G+ RGF F+T+ D VDK V+
Sbjct: 103 KIFIGGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIVV 162
Query: 78 EDTHIINGKQVEIKRTIPK 96
+ H IN ++K+ K
Sbjct: 163 QKCHTINRHNCDVKKAPSK 181
Score = 117 (46.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155
+G + + K+F+GG+ S+D L+ F ++ +L H ++ D +T RSR FGFV +
Sbjct: 2 EGHNPKEQEQLSKLFIGGLSFETSDDSLREHFEQWD-MLTHCVVMDPQTKRSRVFGFVTY 60
Query: 156 DSEEVVDE-MLSKGNMIDMAGTQVE 179
+ VD M ++ + +D G VE
Sbjct: 61 SCVKEVDAAMCARPHKVD--GCVVE 83
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 230 (86.0 bits), Expect = 7.0e-19, P = 7.0e-19
Identities = 50/165 (30%), Positives = 88/165 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S D+ +T D S + + LP++ T FG G+I +++D+ TGQ G+GF
Sbjct: 55 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 112
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL
Sbjct: 113 VNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 169
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 170 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI-KG 213
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 230 (86.0 bits), Expect = 7.1e-19, P = 7.1e-19
Identities = 50/165 (30%), Positives = 88/165 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S D+ +T D S + + LP++ T FG G+I +++D+ TGQ G+GF
Sbjct: 56 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 113
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL
Sbjct: 114 VNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 170
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 171 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI-KG 214
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 230 (86.0 bits), Expect = 7.1e-19, P = 7.1e-19
Identities = 50/165 (30%), Positives = 88/165 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S D+ +T D S + + LP++ T FG G+I +++D+ TGQ G+GF
Sbjct: 56 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 113
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL
Sbjct: 114 VNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 170
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 171 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI-KG 214
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 48/180 (26%), Positives = 93/180 (51%)
Query: 7 SDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFIT 66
S+ + + K+F+G L D F + G + + ++ +R T Q RGFGF+T
Sbjct: 138 SERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 197
Query: 67 YADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSE 120
+ + +E + + +NG+ + + + P+GS + + +++VG +P V
Sbjct: 198 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 257
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
L+ FS++GKV+E +++ D ET RSRGFGFV + ++E +S + ++ G + +
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 52/147 (35%), Positives = 82/147 (55%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIG L +TT + +H K+ +TD V+M+D + GFGF+TY+ VD +
Sbjct: 25 KLFIGYLSFETTDDSLREHSEKW-TLTDCVVMRDPLFERSSGFGFVTYSCVEEVDAAMCA 83
Query: 79 DTHIINGKQVEIKRTIPKGSGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++G+ V + + S + T KKIFVGG+ E LK++F KYGK+
Sbjct: 84 RPHKVDGRVVGPRAVSREDSVKPGTHLTVKKIFVGGVREDREEYNLKDYFEKYGKIGTID 143
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEM 164
++ D ++ + RGF FV FD + VD++
Sbjct: 144 VMEDRQSGKKRGFAFVTFDDLDTVDKI 170
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +D +F KYG I +M+DR +G+ RGF F
Sbjct: 99 SREDSVKPGTHLTVKKIFVGGVREDREEYNLKDYFEKYGKIGTIDVMEDRQSGKKRGFAF 158
Query: 65 ITYADPSVVDKV-IEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK+ ++ H ING E+K+ + K QS
Sbjct: 159 VTFDDLDTVDKIAVQKYHTINGHNCEMKKVLSKQGMQS 196
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 53/163 (32%), Positives = 83/163 (50%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + +HF K+G +TD + R GFGF+TY+ VD +
Sbjct: 3 KLFIGGLSFETTDDSLREHFEKWGTLTDCGNKRSR------GFGFLTYSCVEEVDAAVCA 56
Query: 80 THIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
+V KR + + KK++VGGI E L+ +F KYGK+ +
Sbjct: 57 RPHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYVGGIKEDTEEYNLRGYFKKYGKIETIE 116
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
++ ++ + RGF FV FD + VD++L K + I+ G E+
Sbjct: 117 VMEGRQSGKKRGFAFVTFDDHDTVDKILQKHHAIN--GNNCEV 157
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G K+++GG+ +DT +F KYG I +M+ R +G+ RGF F
Sbjct: 72 SREDSVKPGAHLMVKKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAF 131
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK+++ H ING E+ + + K
Sbjct: 132 VTFDDHDTVDKILQKHHAINGNNCEVGKVLSK 163
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 53/163 (32%), Positives = 83/163 (50%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + +HF K+G +TD + R GFGF+TY+ VD +
Sbjct: 33 KLFIGGLSFETTDDSLREHFEKWGTLTDCGNKRSR------GFGFLTYSCVEEVDAAVCA 86
Query: 80 THIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
+V KR + + KK++VGGI E L+ +F KYGK+ +
Sbjct: 87 RPHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYVGGIKEDTEEYNLRGYFKKYGKIETIE 146
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
++ ++ + RGF FV FD + VD++L K + I+ G E+
Sbjct: 147 VMEGRQSGKKRGFAFVTFDDHDTVDKILQKHHAIN--GNNCEV 187
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G K+++GG+ +DT +F KYG I +M+ R +G+ RGF F
Sbjct: 102 SREDSVKPGAHLMVKKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAF 161
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK+++ H ING E+ + + K
Sbjct: 162 VTFDDHDTVDKILQKHHAINGNNCEVGKVLSK 193
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 224 (83.9 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 50/165 (30%), Positives = 87/165 (52%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S D+ +T D S + LP++ T FG G+I +++D+ TGQ G+GF
Sbjct: 27 SPVDSGNTED--SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 84
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL
Sbjct: 85 VNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI-KG 185
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 224 (83.9 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 50/165 (30%), Positives = 87/165 (52%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S D+ +T D S + LP++ T FG G+I +++D+ TGQ G+GF
Sbjct: 27 SPVDSGNTED--SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGF 84
Query: 65 ITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL
Sbjct: 85 VNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI-KG 185
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 225 (84.3 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 49/139 (35%), Positives = 89/139 (64%)
Query: 37 KHFGKYGDITDSVIMKDRYTGQPR--GFGFITYADPSVVDKVI-EDTHIINGKQVEI--K 91
++FG++G++ + ++M+D T + R GFGF+T+ D + VDKV+ + H ++ K V+I K
Sbjct: 125 EYFGQFGEVKECLVMRDPLTKRSRCRGFGFVTFMDQAGVDKVLAQSRHELDSKTVQIDPK 184
Query: 92 RTIPKGSGQSKDF--KTKKIFVGGIPSSVSEDELKNFFSKYGKVL--EHQIIRDHETNRS 147
P+ + +TKKIFVGG+ + + +++K +F ++ KV + ++ D TNR
Sbjct: 185 VAFPRRAQPKVQMVTRTKKIFVGGLSVNTTVEDVKQYFEQFEKVQVDDAMLMFDKTTNRH 244
Query: 148 RG--FGFVIFDSEEVVDEM 164
RG FGFV F+SE++V+++
Sbjct: 245 RGVGFGFVTFESEDIVEKV 263
Score = 135 (52.6 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 33/84 (39%), Positives = 50/84 (59%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYG--DITDSVIMKDRYTGQPRG--FGFITYADPSVVDK 75
KIF+GGL +TT ++F ++ + D+++M D+ T + RG FGF+T+ +V+K
Sbjct: 203 KIFVGGLSVNTTVEDVKQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVEK 262
Query: 76 VIE-DTHIINGK--QVEIKRTIPK 96
V E H IN K QVE K+ PK
Sbjct: 263 VCEIHFHEINNKMVQVECKKAQPK 286
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 50/132 (37%), Positives = 79/132 (59%)
Query: 51 MKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-K 107
M+D + + RGFGF+T++ + VD + H I+G+ VE KR + + SG+ T K
Sbjct: 1 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 60
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM-LS 166
K+FVGGI E L+++F +YGK+ +II D ++ + RGFGFV FD + VD++ L
Sbjct: 61 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 120
Query: 167 KGNMIDMAGTQV 178
K + I+ +V
Sbjct: 121 KYHTINGHNAEV 132
Score = 161 (61.7 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
++ +S P G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGF
Sbjct: 46 AREESGKP--GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 103
Query: 63 GFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
GF+T+ D VDK++ + H ING E+++ + +
Sbjct: 104 GFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 138
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 58/164 (35%), Positives = 84/164 (51%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++ T + K+FIGGL TT + HF ++G +TD V M+D RGFGF
Sbjct: 2 SKSES--TKEPEQLWKLFIGGLSFKTTDESLRSHFEQWGTLTDCV-MRDPNNKISRGFGF 58
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSED 121
+TY +D + H ++G VE KR + + KKIFVG V ED
Sbjct: 59 VTYTTVEELDAAMNARPHKVDGGVVEPKRAVSREDSPRPGAHLTVKKIFVG-----VKED 113
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+ F +YGK+ +I+ D + + RGF FV FD + VD ++
Sbjct: 114 TEGHHFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIV 157
Score = 155 (59.6 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 35/91 (38%), Positives = 52/91 (57%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+P G + KIF+G + +DT HF +YG I IM DR +G+ RGF F
Sbjct: 90 SREDSPRPGAHLTVKKIFVG-VKEDTE----GHHFEQYGKIEVIEIMTDRGSGKKRGFAF 144
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTI 94
+T+ DP VD VI+ H +NG E+++ +
Sbjct: 145 VTFDDPDSVDTIVIQKYHTVNGHNCEVRKAL 175
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 144 (55.7 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD 156
G G S +++VG + V + L++ FS+ GKV+E ++I D ++ RS+GFGFV +D
Sbjct: 194 GGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253
Query: 157 SEEVVDEMLSKGNMIDMAGTQVEI 180
S + V + + D+ G Q+ +
Sbjct: 254 SSQEVQNAIKSLDGADLDGRQIRV 277
Score = 115 (45.5 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 29/86 (33%), Positives = 41/86 (47%)
Query: 95 PKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVI 154
PK S D K +FVG +P +V +L F G V ++I D T RSRGFGFV
Sbjct: 82 PKEQSFSADLK---LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVT 138
Query: 155 FDSEEVVDEMLSKGNMIDMAGTQVEI 180
S V+ + N ++ G + +
Sbjct: 139 MSSVSEVEAAAQQFNGYELDGRPLRV 164
Score = 107 (42.7 bits), Expect = 0.00064, P = 0.00064
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 2 GSKSKSDNPHTGDGASPG-KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60
GS G GA G ++++G L F + G + ++ ++ DR +G+ +
Sbjct: 186 GSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSK 245
Query: 61 GFGFITYADPSVVDKVIE--DTHIINGKQVEI 90
GFGF+TY V I+ D ++G+Q+ +
Sbjct: 246 GFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277
Score = 96 (38.9 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+G LP + A + F G++ ++ D+ TG+ RGFGF+T + S V+ +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 80 THIINGKQVE 89
NG +++
Sbjct: 152 ---FNGYELD 158
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 50/149 (33%), Positives = 76/149 (51%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TTY HF + G +TD V+ +D T + RGFGF+TYA VD +
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H ++ + VE R + + Q F V GI E L+N + +YG++ +I
Sbjct: 61 RPHKVDARVVEPNRAVSREDSQRPGF------VCGIKEDTEEHHLQNNYEQYGQIEVIEI 114
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
+ D + R F FV F ++ + +L K
Sbjct: 115 MTDRGLGKKRDFAFVTFHDHDLDEIVLQK 143
Score = 122 (48.0 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D PG F+ G+ +DT ++ +YG I IM DR G+ R F F+T+ D +
Sbjct: 80 DSQRPG--FVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGLGKKRDFAFVTFHDHDLD 137
Query: 74 DKVIEDTHIINGKQVEIKRTIPKGSGQSKDF 104
+ V++ H ++G E+++ + K QS D+
Sbjct: 138 EIVLQKYHNVHGYNCEVRKALSK---QSPDY 165
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 219 (82.2 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 45/157 (28%), Positives = 83/157 (52%)
Query: 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSV 72
G S + + LP++ T FG G+I +++D+ TGQ G+GF+ Y +P
Sbjct: 62 GSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKD 121
Query: 73 VDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYG 131
+K I + +NG +++ K + S + ++V G+P ++++ EL+ FS++G
Sbjct: 122 AEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFG 178
Query: 132 KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 179 RIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAI-KG 214
>UNIPROTKB|F1SA31 [details] [associations]
symbol:F1SA31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:CU856608
Ensembl:ENSSSCT00000014866 Uniprot:F1SA31
Length = 332
Score = 215 (80.7 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 55/164 (33%), Positives = 89/164 (54%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT N ++ ++G + D V+++D T Q F + + VD
Sbjct: 17 KLFIGGLSSQTTGKGLN-YYKQWGKL-DCVVIRDP-TSQKSRFILLHFHPWLRVDAARAA 73
Query: 80 T-HIINGKQVEIKRTIPKGS-GQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
T I+GK V K +P+ G+ T KK+F+GG+ E L+++F KY K+
Sbjct: 74 TPRSIDGKMVAPKHAVPREDYGKPGPLVTVKKLFIGGLTEDTEEHHLRDYFEKYEKIDAI 133
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
+II D ++++ RGFGFV FD + VD++L K + ++ G E+
Sbjct: 134 EIITDRQSSKIRGFGFVTFDDHDHVDKLLQKNHTVN--GHHAEV 175
Score = 158 (60.7 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 32/90 (35%), Positives = 52/90 (57%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +DT +F KY I I+ DR + + RGFGF+T+ D VDK+++
Sbjct: 105 KLFIGGLTEDTEEHHLRDYFEKYEKIDAIEIITDRQSSKIRGFGFVTFDDHDHVDKLLQK 164
Query: 80 THIINGKQVEIKRTIPKGSGQS-KDFKTKK 108
H +NG E+++ + + Q + F++ K
Sbjct: 165 NHTVNGHHAEVRKALSQSKIQEVQHFRSGK 194
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 50/149 (33%), Positives = 80/149 (53%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL + T HF ++G +T+SV+M+D T + GFGF+TYA VD + E
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 79 DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++ + +E KR + + + KKIFVG + E L+++F +YGK+ +
Sbjct: 61 RPHKVDERVLEPKRAVSREDSERTGTHLTVKKIFVGVVKEDTEEHHLRDYFEQYGKI-QR 119
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEML 165
Q + GF F FD + VD+++
Sbjct: 120 QW-------KKEGFCFFTFDDHDSVDKIV 141
Score = 112 (44.5 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 20/60 (33%), Positives = 38/60 (63%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +++ L++ F ++G + ++RD T RS GFGFV + + E VD +++
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 217 (81.4 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 49/166 (29%), Positives = 88/166 (53%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT-GQPRGFG 63
S ++ +T D S + + LP++ T FG G+I +++D+ T GQ G+G
Sbjct: 54 SPVESNNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYG 111
Query: 64 FITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDE 122
F+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ E
Sbjct: 112 FVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKE 168
Query: 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168
L+ FS+YG+++ +I+ D T SRG GF+ FD +E + KG
Sbjct: 169 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI-KG 213
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 50/164 (30%), Positives = 85/164 (51%)
Query: 4 KSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFG 63
+ KS++P + K+FI GL + T + HF ++G +TD V+M+D T RGFG
Sbjct: 1 RPKSESPKEPEQLQ--KLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFG 58
Query: 64 FITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSED 121
+ D ++ + + + + +E KR + + KKIFVGGI E
Sbjct: 59 AMEEVDAAMNSRPCK----VGRRVLEPKRAVSQEDSPRPGVLLTVKKIFVGGIKEDTEEH 114
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
L+++F +YGK+ + + D + + RGF FV FD + VD+++
Sbjct: 115 HLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIV 158
Score = 154 (59.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 35/93 (37%), Positives = 52/93 (55%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+P G + KIF+GG+ +DT +F +YG I M DR +G+ RGF F
Sbjct: 86 SQEDSPRPGVLLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAF 145
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H NG +++T+ K
Sbjct: 146 VTFDDHDSVDKIVIQKYHAANGHNRVVRKTLWK 178
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 212 (79.7 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 52/158 (32%), Positives = 85/158 (53%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT +F ++G + D+++++D T RGFGF+T+A + + D
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 130
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKD----FKTK-----KIFVGGIPSSV-SEDELKNFFS 128
H + GK V+ KR IP+ S F+T K+ + GI + V S D L+ +F
Sbjct: 131 RPHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCKLLLNGITNGVHSVDSLRVYFE 190
Query: 129 KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+G + + +I+ + RG GFVI++ +E D L+
Sbjct: 191 TFGTLDQVEIL-----GQPRGLGFVIYEDKESADRCLA 223
Score = 134 (52.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFV----IFDSEEVVD 162
+K+F+GG+ ++++L N+FS++G V++ +IRD T SRGFGFV IF +E ++
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 129
Query: 163 EMLSK--GNMID 172
+ K G +D
Sbjct: 130 DRPHKLGGKTVD 141
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 51/165 (30%), Positives = 88/165 (53%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRG 61
GSK ++ DG K+FI GL DT+ +G++ D +I D TG+ RG
Sbjct: 3 GSKINANKNQQDDG----KMFIRGLSWDTSKKDLT-----FGEVVDCIIETDPVTGRSRG 53
Query: 62 FGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120
FGF+ + + + VDKV+E H ++ ++ PK + K+ KK+FVGG+ E
Sbjct: 54 FGFVLFKEAASVDKVLELKEHKLDSMLID-----PKRAKALKE-PPKKVFVGGLSPDTYE 107
Query: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+++K + +G++ ++ D +TN RGF F+ + E+ V ++L
Sbjct: 108 EQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLL 152
Score = 140 (54.3 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
P K+F+GGL DT ++ G +G+I + + D T + RGF FITY D V K++
Sbjct: 93 PKKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLL 152
Query: 78 EDT-HIINGKQVEIKRTIPK 96
E+ H I + EIK PK
Sbjct: 153 ENRYHQIGSGKCEIKVAEPK 172
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 52/147 (35%), Positives = 74/147 (50%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + H + S +M D T RGF F+TYA VD +
Sbjct: 14 KLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEVDAAMNA 69
Query: 80 T-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++ + VE KR + + Q KKIF GGI E L+++F K GK+
Sbjct: 70 RPHKVDRRVVEPKRGVSREGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFEKPGKIEVI 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE 163
+I+ D + + RGF FV FD + VD+
Sbjct: 130 EIMTDPSSGKKRGFAFVTFDDHDSVDK 156
Score = 134 (52.2 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 36/96 (37%), Positives = 49/96 (51%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ + G + KIF GG+ +DT +F K G I IM D +G+ RGF F
Sbjct: 86 SREGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAF 145
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSG 99
+T+ D VDK VI+ H +NG E R+ GSG
Sbjct: 146 VTFDDHDSVDKTVIQKYHTVNGHNRERGRS---GSG 178
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 52/164 (31%), Positives = 84/164 (51%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+ IGGL TT+ + HF K+G TD V+M+D T + R GF+TY VD +
Sbjct: 24 KLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAAMNA 83
Query: 80 T-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
++G+ V+ KR + + Q KKIF GGI E ++++F YGK+
Sbjct: 84 RPQKMDGRLVKPKRAVSREDSQRPGTQLTVKKIFEGGIKEDTEEHNVRDYFEHYGKIDMI 143
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVE 179
+I+ D + + F V D + VD++ + K + ++ GT V+
Sbjct: 144 EIMTDRSSGKKE-FALVPLDDHDSVDKIAIQKYHTVN--GTTVK 184
Score = 113 (44.8 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 29/86 (33%), Positives = 43/86 (50%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF GG+ +DT +F YG I IM DR +G+ + F
Sbjct: 100 SREDSQRPGTQLTVKKIFEGGIKEDTEEHNVRDYFEHYGKIDMIEIMTDRSSGK-KEFAL 158
Query: 65 ITYADPSVVDKV-IEDTHIINGKQVE 89
+ D VDK+ I+ H +NG V+
Sbjct: 159 VPLDDHDSVDKIAIQKYHTVNGTTVK 184
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 211 (79.3 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 45/128 (35%), Positives = 71/128 (55%)
Query: 41 KYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSG 99
K+G +TD V+M+D T RGF F+TYA VD + H ++ + VE+K+ + +
Sbjct: 2 KWGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDS 61
Query: 100 Q--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS 157
Q KKIFVGGI + L+++F YGK+ +I+ D + R F FV FD+
Sbjct: 62 QRPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDA 121
Query: 158 EEVVDEML 165
+ VD+++
Sbjct: 122 HDSVDKIV 129
Score = 149 (57.5 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F YG I IM DR +G R F F
Sbjct: 57 SREDSQRPGAHLTVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAF 116
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ VDK VI+ H +NG E+++ + K
Sbjct: 117 VTFDAHDSVDKIVIQKYHTVNGHNCEVRKALLK 149
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 49/150 (32%), Positives = 80/150 (53%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
++FI GL +TT + HF ++G + D V+M D T R FGF+ YA VD +
Sbjct: 15 RLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVDAAVNV 74
Query: 79 DTHIIN--GK-QVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE 135
H +N GK ++ + R + G KK FVGGI E L+++F +YG++
Sbjct: 75 RPHKVNRIGKPKMAVSREDSQRPGAH--LTGKKTFVGGIKEDTEEHHLRHYFEQYGEIRM 132
Query: 136 HQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
+I+ D +++ RGF FV D + +D+++
Sbjct: 133 IEIMTDQGSDKKRGFAFVTCDDHDSIDKIV 162
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 38/120 (31%), Positives = 60/120 (50%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + K F+GG+ +DT +F +YG+I IM D+ + + RGF F
Sbjct: 90 SREDSQRPGAHLTGKKTFVGGIKEDTEEHHLRHYFEQYGEIRMIEIMTDQGSDKKRGFAF 149
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK----GSGQSKDFKTKKIFVGGIPSSVS 119
+T D +DK VI+ H +NG E++R + K + S+ K F GG + S
Sbjct: 150 VTCDDHDSIDKIVIQKQHTVNGHNYEVRRALSKQEMASASTSRRSKGSGNFDGGCGGNFS 209
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 210 (79.0 bits), Expect = 5.6e-17, P = 5.6e-17
Identities = 56/167 (33%), Positives = 87/167 (52%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S S++P D K+FIGGL +TT + HF + G +TD V M+D T RGFGF
Sbjct: 16 SMSESPK--DPEQLQKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGF 73
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKD----FKTKKIFVGGIPSSVS 119
+TYA VD H ++ + VE KR + + Q K K+ + +
Sbjct: 74 VTYATMEEVDAATNARPHKVD-RVVEPKRAVSREDSQRPGAHLTMKKKEEEEEEEDDNNT 132
Query: 120 ED-ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
E+ L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 133 EEYHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 179
Score = 130 (50.8 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 38 HFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+F +YG I IM DR +G+ RGF F+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 140 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 199
Query: 97 ---GSGQSKDFKT--KKIFVGGIPSSVSEDELKNFFS 128
S +K+ K ++ F GG V ++ NF S
Sbjct: 200 QEMASASAKEAKVVLERNFGGGGGGGVGGND--NFGS 234
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 48/160 (30%), Positives = 83/160 (51%)
Query: 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80
+ + GLP TT ++F +G++ + KD TG +GFGF+ + + KV+
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 81 HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIR 140
H+I+G+ + K K S Q + +++K+FVG ++EDEL+ FFS+YG V++ I +
Sbjct: 166 HMIDGRWCDCKLPNSKQS-QDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224
Query: 141 DHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
R F FV F +++ + G + + G V I
Sbjct: 225 PF-----RAFAFVTFADDQIAQSLC--GEDLIIKGISVHI 257
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
KT + V G+P +E +LK +FS +G+VL Q+ +D +T S+GFGFV F E ++
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 161
Query: 165 LSKGNMID 172
+S+ +MID
Sbjct: 162 MSQRHMID 169
Score = 107 (42.7 bits), Expect = 0.00068, P = 0.00068
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+G +D T + F +YGD+ D I K R F F+T+AD + + +
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLCGE 246
Query: 80 THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIP 115
II G V I PK + ++ + F GG P
Sbjct: 247 DLIIKGISVHISNAEPKHNS-NRQLERSGRF-GGNP 280
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 48/160 (30%), Positives = 83/160 (51%)
Query: 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80
+ + GLP TT ++F +G++ + KD TG +GFGF+ + + KV+
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 81 HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIR 140
H+I+G+ + K K S Q + +++K+FVG ++EDEL+ FFS+YG V++ I +
Sbjct: 166 HMIDGRWCDCKLPNSKQS-QDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK 224
Query: 141 DHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180
R F FV F +++ + G + + G V I
Sbjct: 225 PF-----RAFAFVTFADDQIAQSLC--GEDLIIKGISVHI 257
Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
KT + V G+P +E +LK +FS +G+VL Q+ +D +T S+GFGFV F E ++
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 161
Query: 165 LSKGNMID 172
+S+ +MID
Sbjct: 162 MSQRHMID 169
Score = 106 (42.4 bits), Expect = 0.00090, P = 0.00090
Identities = 25/77 (32%), Positives = 36/77 (46%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+F+G +D T + F +YGD+ D I K R F F+T+AD + + +
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLCGE 246
Query: 80 THIINGKQVEIKRTIPK 96
II G V I PK
Sbjct: 247 DLIIKGISVHISNAEPK 263
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 43/114 (37%), Positives = 69/114 (60%)
Query: 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80
+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 81 -HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKV 133
H +NGK ++ KR K ++K+ KKIFVGG+ E++++ +F +G+V
Sbjct: 61 EHKLNGKVIDPKRA--KAM-KTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEV 110
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 24/59 (40%), Positives = 42/59 (71%)
Query: 109 IFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
+F+GG+ ++ +LK++FSK+G+V++ + D T RSRGFGFV+F E VD+++ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 59
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 51/147 (34%), Positives = 73/147 (49%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + H + S +M D T RGF F+TYA VD +
Sbjct: 15 KLFIGGLSFETTDESLRSHCSH----SPSCVMTDPNTKCSRGFRFVTYATVEEVDAAMNA 70
Query: 80 T-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++ + VE KR + + Q KKIF GGI E L+++F GK+
Sbjct: 71 RPHKVDRRVVEPKRGVSREGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFENNGKIEVI 130
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE 163
+I+ D + + RGF FV FD + VD+
Sbjct: 131 EIMTDPSSGKKRGFAFVTFDDHDSVDK 157
Score = 139 (54.0 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 32/93 (34%), Positives = 48/93 (51%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ + G + KIF GG+ +DT +F G I IM D +G+ RGF F
Sbjct: 87 SREGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAF 146
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +NG E+++ + K
Sbjct: 147 VTFDDHDSVDKTVIQKYHTVNGHNREVRKALSK 179
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 51/164 (31%), Positives = 87/164 (53%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+G L +F K+G++ D I D TG+ RGFGF+ D + V+K+++
Sbjct: 72 GKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILD 131
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H +NG ++ P+ + K+ KKIFVG P + E F ++G++ +
Sbjct: 132 QKEHRLNGDVID-----PEKAKVMKNDPVKKIFVGLNPEAT---EKNRDFGEFGEIEAIE 183
Query: 138 IIRDHETNRSRGFGFVIF-DSEEVVDEMLSKGNMIDMAGTQVEI 180
+ D ++N+ RGF F+ F + EE V ++L K ++G + EI
Sbjct: 184 LPMDPKSNKRRGFVFITFKEEEEPVKKVLEK-KFHTISGRKCEI 226
Score = 128 (50.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 83 INGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDH 142
I G+Q+++ + + + G K+FVG + S + +LKN+F+K+G+V++ I D
Sbjct: 57 IEGEQIKVSKNVEE-EG--------KMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDP 107
Query: 143 ETNRSRGFGFVIFDSEEVVDEMLSK 167
T RSRGFGFV+ V+++L +
Sbjct: 108 NTGRSRGFGFVLIKDAASVEKILDQ 132
Score = 111 (44.1 bits), Expect = 0.00019, P = 0.00019
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSV-VDKVIE 78
KIF+G P+ T N+ FG++G+I + D + + RGF FIT+ + V KV+E
Sbjct: 157 KIFVGLNPEATEK---NRDFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVLE 213
Query: 79 DT-HIINGKQVEIKRTIPKGSGQSK 102
H I+G++ EIK PK Q +
Sbjct: 214 KKFHTISGRKCEIKVAQPKEDYQQQ 238
Score = 35 (17.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 27 PKDTTYATFNKH 38
P +TT AT N+H
Sbjct: 8 PWETTGATENRH 19
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 34/90 (37%), Positives = 51/90 (56%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F+T+
Sbjct: 45 DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 104
Query: 68 ADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
D VDK VI+ H +NG E+++ + K
Sbjct: 105 DDHDSVDKIVIQKYHTVNGHNCEVRKALSK 134
Score = 137 (53.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165
KKIFVGGI E L+++F +YGK+ +I+ D + + RGF FV FD + VD+++
Sbjct: 56 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 114
Score = 80 (33.2 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSV 49
SKS++P + K+FIGGL +TT + HF ++G +TD V
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCV 44
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 50/148 (33%), Positives = 78/148 (52%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FI GL +T + + HF + G V+M+ T RGFGF+T + +
Sbjct: 11 KLFIRGLSFETIDESLSSHF-EMGKAHRLVVMRVPNTKHSRGFGFVTKPWWRSLAAMNAR 69
Query: 80 THIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
H ++ + VE KR + +G Q KKIFVGGI E L+N F +YGK+ + +
Sbjct: 70 PHKVDERVVEPKRDVSRGDSQRPHAHLTVKKIFVGGIQEGTEEHHLRNNFEQYGKI-DIE 128
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEML 165
I+ D +++ RGF F FD + VD+++
Sbjct: 129 IMTDRGSDKKRGFAFETFDDHDSVDKIV 156
Score = 144 (55.7 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 35/95 (36%), Positives = 50/95 (52%)
Query: 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF 62
S+ S PH + KIF+GG+ + T +F +YG I D IM DR + + RGF
Sbjct: 85 SRGDSQRPHAH--LTVKKIFVGGIQEGTEEHHLRNNFEQYGKI-DIEIMTDRGSDKKRGF 141
Query: 63 GFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
F T+ D VDK VI+ H +NG E++ + K
Sbjct: 142 AFETFDDHDSVDKIVIQKYHTVNGHNCEVREALSK 176
WARNING: HSPs involving 1162 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.136 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 349 190 0.00091 110 3 11 22 0.37 33
31 0.42 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1412
No. of states in DFA: 527 (56 KB)
Total size of DFA: 136 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.46u 0.14s 17.60t Elapsed: 00:00:01
Total cpu time: 17.50u 0.14s 17.64t Elapsed: 00:00:01
Start: Fri May 10 08:37:11 2013 End: Fri May 10 08:37:12 2013
WARNINGS ISSUED: 2