BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018875
(349 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 127/189 (67%), Gaps = 18/189 (9%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GG+ +T +HF YG+++ +++M+D+ TG+PRGFGF+ ++DPSV+D+V++
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 79 DTHIINGKQVEIKRTIPKG----SGQSKDF------------KTKKIFVGGIPSSVSEDE 122
+ H I+ ++V++KR + + SG++ + KTKKIFVGG+P +++++E
Sbjct: 66 EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125
Query: 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182
+ +F YG V + I+ D TNR RGFGFV FDSE+ VD +L K D++G QVE+K+
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHDLSGKQVEVKR 184
Query: 183 AEPKKSSNP 191
A P K +NP
Sbjct: 185 ALP-KDANP 192
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 161 bits (407), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 147/263 (55%), Gaps = 22/263 (8%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL +TT +++F ++GDI D V+MK+ +G+ RGFGF+T+ADP+ V+ V++
Sbjct: 7 GKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ 66
Query: 79 D-THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
+ H ++G+ ++ K P+ + K K+F+GG+PS+V+E +L+ FF++YGKV E
Sbjct: 67 NGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVV 126
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPPPPPSY 197
I+ D E +SRGFGF+ F+ E V E ++ I++ G QVEIKKAEP+ S
Sbjct: 127 IMYDQEKKKSRGFGFLSFEEESSV-EHVTNERYINLNGKQVEIKKAEPRDGSG------- 178
Query: 198 ASNSRGRSFNDGFGGFGSSYG-------------GFDGGFGPGPYRTPAGLGGRLGGGYG 244
NS + +G G+ G +G G P P G + G G
Sbjct: 179 GQNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQGQNGQMGGPPLNMPIGAPNMMPGYQG 238
Query: 245 YGSSGGEYGGGYGGFGGSSLGGY 267
+G+S + GYG G S G+
Sbjct: 239 WGTSPQQQQYGYGNSGPGSYQGW 261
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 111/167 (66%), Gaps = 5/167 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL DTT ++FGKYG +TD IMKD TG+ RGFGF+++ PS VD+V++
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 80 THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139
HI++GK ++ KR IP+ KT KIFVGGI V E + FFS++G +++ Q++
Sbjct: 220 QHILDGKVIDPKRAIPRDEQD----KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLM 275
Query: 140 RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186
D +T +SRGFGFV +DS + VD + + ID ++EIK+AEP+
Sbjct: 276 LDKDTGQSRGFGFVTYDSADAVDR-VCQNKFIDFKDRKIEIKRAEPR 321
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GKIF+GG+ D F + F ++G I D+ +M D+ TGQ RGFGF+TY VD+V +
Sbjct: 243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 302
Query: 79 DTHI-INGKQVEIKRTIPKGSGQ 100
+ I +++EIKR P+ Q
Sbjct: 303 NKFIDFKDRKIEIKRAEPRHMQQ 325
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ +ED L+ +F KYG V + +I++D T RSRGFGF+ F+ VDE++
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 168 GNMIDMAGTQVEIKKAEPKKSSN 190
+++D G ++ K+A P+ +
Sbjct: 220 QHILD--GKVIDPKRAIPRDEQD 240
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 151 bits (381), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 121/192 (63%), Gaps = 10/192 (5%)
Query: 2 GSKSKSDNPHTGDGASP-----GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT 56
GS + N + SP GK+FIGGL +TT + +F ++G++ D +M+D T
Sbjct: 141 GSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTT 200
Query: 57 GQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPS 116
G+ RGFGF+T+ +P V++V+ H ++GK ++ KR IP+ + KT K+FVGG+P
Sbjct: 201 GRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQE----KTAKMFVGGVPG 256
Query: 117 SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176
+E+E +NFF+++G+VL+ ++ D +T R RGFGFV +++E V+ +S+ I + G
Sbjct: 257 DCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQP-YITIHGK 315
Query: 177 QVEIKKAEPKKS 188
VE+K+A PK S
Sbjct: 316 PVEVKRATPKAS 327
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 126/232 (54%), Gaps = 17/232 (7%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 D-THIINGKQVEIKRTIPKGSG--------------QSKDFKTKKIFVGGIPSSVSEDEL 123
H ++G+ ++ K P+G +S K+ KIFVGGIP + E EL
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183
+ +F K+G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+K+A
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRA 188
Query: 184 EPKKSSNPPPPPSYASNSRGRSFNDGFGGF-GSSYGGFDGGFGPGPYRTPAG 234
EP+ S N P AS R G+ G + G+GP PAG
Sbjct: 189 EPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAG 240
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 108 DSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDS 193
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 128/232 (55%), Gaps = 17/232 (7%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 D-THIINGKQVEIKRTIPKGSG--------------QSKDFKTKKIFVGGIPSSVSEDEL 123
H ++G+ ++ K P+G +S + K+ KIFVGGIP + E EL
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183
+ +F K+G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+K+A
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKRA 188
Query: 184 EPKKSSNPPPPPSYASNSRGRSFNDGFGGF-GSSYGGFDGGFGPGPYRTPAG 234
EP+ S + P AS R + G+ G + G+GP PAG
Sbjct: 189 EPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG 240
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV 73
D + KIF+GG+P + ++F K+G +T+ V++ D +PRGFGFIT+ D V
Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 74 DKVIE-DTHIINGKQVEIKRTIPKGS 98
D+ + H I GK+VE+KR P+ S
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDS 193
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 127/192 (66%), Gaps = 7/192 (3%)
Query: 1 MGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60
+G S S+ P+ PGK+FIGGL T+ + +FG+YGDI+++++MKD T + R
Sbjct: 16 LGPCSPSEVPN-----DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSR 70
Query: 61 GFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVS 119
GFGF+T++DP+ VDKV+ TH ++GK+V+ K P+ + +TKKIFVGG+ + +
Sbjct: 71 GFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTT 130
Query: 120 EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179
+++K++F ++G + + ++ D +TNR RGFGFV F SE+VVD+ + + + ++ VE
Sbjct: 131 LEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK-VCEIHFHEINNKMVE 189
Query: 180 IKKAEPKKSSNP 191
KKA+PK+ P
Sbjct: 190 CKKAQPKEVMLP 201
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 120/203 (59%), Gaps = 19/203 (9%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+F+GGL TT T +F +YG++ D VIMKD+ T Q RGFGF+ + DP+ V V+
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 79 DT-HIINGKQVEIKRTIPKGS----------GQSKDFKTK-----KIFVGGIPSSVSEDE 122
H ++G+ ++ K P+G Q K+ +T+ KIFVGGIP + E E
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETE 129
Query: 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182
LK +F+++G V E +I D E R RGFGF+ F+ E+ VD+ ++ + D+ G +VE+K+
Sbjct: 130 LKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVKR 188
Query: 183 AEPK--KSSNPPPPPSYASNSRG 203
AEP+ KS P PP S SR
Sbjct: 189 AEPRDSKSQTPGPPGSNQWGSRA 211
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 6 KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFI 65
+ P T + S KIF+GG+P + ++F ++G +T+ V++ D +PRGFGFI
Sbjct: 102 QQKEPRTENSRS-NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFI 160
Query: 66 TYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGS 98
T+ D VD+ + H I GK+VE+KR P+ S
Sbjct: 161 TFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 194
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 115/176 (65%), Gaps = 2/176 (1%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
PGK+FIGGL T+ + +F K+G+I + ++M+D T + RGFGF+T+ADP+ VDKV+
Sbjct: 20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79
Query: 78 -EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
+ H ++ K ++ K P+ + +TKKIFVGG+ ++ +++K +F ++GKV +
Sbjct: 80 GQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
++ D TNR RGFGFV F++E+VV E + + + ++ VE KKA+PK+ PP
Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVV-EKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 115/176 (65%), Gaps = 2/176 (1%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
PGK+FIGGL T+ + +F K+G+I + ++M+D T + RGFGF+T+ADP+ VDKV+
Sbjct: 20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79
Query: 78 -EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
+ H ++ K ++ K P+ + +TKKIFVGG+ ++ +++K +F ++GKV +
Sbjct: 80 GQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
++ D TNR RGFGFV F++E+VV E + + + ++ VE KKA+PK+ PP
Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVV-EKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 124/199 (62%), Gaps = 13/199 (6%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF+T+
Sbjct: 14 DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 68 ADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNF 126
D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++K++
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHY 128
Query: 127 FSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186
F ++GKV + ++ D TNR RGFGFV F+SE++V E + + + ++ VE KKA+PK
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIV-EKVCEIHFHEINNKMVECKKAQPK 187
Query: 187 KSSNPPPPPSYASNSRGRS 205
+ +P ++RGRS
Sbjct: 188 EVMSP------TGSARGRS 200
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 141 bits (355), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 124/199 (62%), Gaps = 13/199 (6%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF+T+
Sbjct: 14 DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 68 ADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNF 126
D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++K++
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHY 128
Query: 127 FSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186
F ++GKV + ++ D TNR RGFGFV F+SE++V E + + + ++ VE KKA+PK
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIV-EKVCEIHFHEINNKMVECKKAQPK 187
Query: 187 KSSNPPPPPSYASNSRGRS 205
+ +P ++RGRS
Sbjct: 188 EVMSP------TGSARGRS 200
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 123/199 (61%), Gaps = 13/199 (6%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF+T+
Sbjct: 14 DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 68 ADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNF 126
D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++K +
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQY 128
Query: 127 FSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186
F ++GKV + ++ D TNR RGFGFV F+SE++V E + + + ++ VE KKA+PK
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIV-EKVCEIHFHEINNKMVECKKAQPK 187
Query: 187 KSSNPPPPPSYASNSRGRS 205
+ +P ++RGRS
Sbjct: 188 EVMSP------TGSARGRS 200
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 100/172 (58%), Gaps = 4/172 (2%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 80 T-HIINGKQVEIKRTIPKGSGQS--KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
T H ++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+
Sbjct: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKS 188
+I+ D + + RGF FV FD + VD+++ + + G E++KA PK+
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VKGHNCEVRKALPKQE 185
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H + G E+++ +PK
Sbjct: 151 VTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPK 183
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-E 163
+ +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 164 MLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
M + + +D G VE K+A ++ S P
Sbjct: 72 MNTTPHKVD--GRVVEPKRAVSREDSQRP 98
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 110/183 (60%), Gaps = 7/183 (3%)
Query: 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
+N H G+ K+FIGGL TT + +HF ++G+I D V+MKD T + RGFGFITY
Sbjct: 7 ENDH-GEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITY 65
Query: 68 ADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQSKDF--KTKKIFVGGIPSSVSEDELK 124
+ +VD H ++G+ VE KR +P+ + KK+FVGGI + E++L+
Sbjct: 66 SRAHMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLR 125
Query: 125 NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKA 183
++F +YG V+ I+ D ET + RGF FV FD + VD++ LS+ + I G +++KKA
Sbjct: 126 DYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQI--RGKHIDVKKA 183
Query: 184 EPK 186
PK
Sbjct: 184 LPK 186
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 102/168 (60%), Gaps = 6/168 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT +G++G + D V+M+D T + RGFGFITY +VD+ E+
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
HII+GK VE KR +P+ +S++ KK+FVGG+ + E+ L+ +F ++G V+
Sbjct: 93 RPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSV 152
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 183
+++ D T + RGF FV FD + VD+ +L K + I V++KK+
Sbjct: 153 KLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKY--VHVDVKKS 198
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML- 165
+K+F+GG+ +E+ LK F+ ++GKV++ ++RD T RSRGFGF+ + +VD
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 166 SKGNMIDMAGTQVEIKKAEPK 186
++ ++ID G VE K+A P+
Sbjct: 92 NRPHIID--GKTVEAKRALPR 110
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 107/183 (58%), Gaps = 13/183 (7%)
Query: 7 SDNPHTGDGASPG--KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SDN G K+F+GGL +TT HFGKYG+I + D TG+ RGF F
Sbjct: 42 SDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAF 101
Query: 65 ITYADPSVVDKV-IEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDEL 123
I + + +DKV D HIIN K+V+ K+ + KIFVGG+ + +S++E+
Sbjct: 102 IVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG---------KIFVGGLTTEISDEEI 152
Query: 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183
K +F ++G ++E ++ D + ++ +GF F+ FDSE+VV ++L K +AG +V++K+A
Sbjct: 153 KTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRA 211
Query: 184 EPK 186
PK
Sbjct: 212 TPK 214
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 21/181 (11%)
Query: 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD 156
SGQ D +K+FVGG+ +E EL++ F KYG++ + D +T RSRGF F++F
Sbjct: 48 ASGQRDD--DRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFT 105
Query: 157 SEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPPPP------PSYASNSRGRSFNDGF 210
+ E +D++ + I + KK +PKK+ + S+ +++ F
Sbjct: 106 NTEAIDKVSAADEHI------INSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQF 159
Query: 211 GGFGSSYGGFDG------GFGPGPYRTPAGLGGRLGG-GYGYGSSGGEYGGGYGGFGGSS 263
G FD GF + + + L +
Sbjct: 160 GNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPENQM 219
Query: 264 L 264
+
Sbjct: 220 M 220
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 105/167 (62%), Gaps = 6/167 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
KIF+GGL +TT + + ++G+ITD ++M+D T + RGFGF+T++ + VD ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 80 T-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
HII+GK V+ KR +P+ + TK+++V G+ +ED L +F+KYG V +
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKS 143
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKK 182
+II D T + RGFGFV FD + VD+ +L K +M++ G + +++K
Sbjct: 144 EIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVN--GHRCDVRK 188
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 6 KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFI 65
+ D + S ++++ G+ +D T ++F KYG +T S I+ D+ T +PRGFGF+
Sbjct: 101 RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFV 160
Query: 66 TYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
T+ D VD+ V++ +H++NG + ++++ + K
Sbjct: 161 TFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 192
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 88 VEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRS 147
VEIK G + +KIFVGG+ S+ ++D ++ F+S++G++ + ++RD T RS
Sbjct: 4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS 63
Query: 148 RGFGFVIFDSEEVVD-EMLSKGNMIDMAGTQVEIKKAEPKK-----SSNPPPPPSYASNS 201
RGFGFV F + VD M + ++ID G V+ K+A P+ SN Y S
Sbjct: 64 RGFGFVTFSGKTEVDAAMKQRPHIID--GKTVDPKRAVPRDDKNRSESNVSTKRLYVSGV 121
Query: 202 RGRSFNDGFGGFGSSYG 218
R D + + YG
Sbjct: 122 REDHTEDMLTEYFTKYG 138
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 107/188 (56%), Gaps = 8/188 (4%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF
Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGF 59
Query: 65 ITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQS--KDFKTKKIFVGGIPSSVSED 121
+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E
Sbjct: 60 VTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEH 119
Query: 122 ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEI 180
L+++F +YGK+ +I+ D + + RGF FV FD + VD++ + K + ++ G E+
Sbjct: 120 HLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEV 177
Query: 181 KKAEPKKS 188
+KA K+
Sbjct: 178 RKALSKQE 185
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 40/181 (22%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE- 163
+ +K+F+GG+ +++ L++ F ++G + + ++RD T RSRGFGFV + + E VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 164 MLSKGNMIDMAGTQVEIKKAEPKKSSNPPPPPSYA---------SNSRGRSFNDGFGGFG 214
M ++ + +D G VE K+A ++ S P ++ D F +G
Sbjct: 72 MNARPHKVD--GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129
Query: 215 S------------------SYGGFDG-----GFGPGPYRTPAGLGGRLGGGY-----GYG 246
++ FD Y T G +
Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189
Query: 247 S 247
S
Sbjct: 190 S 190
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 105/189 (55%), Gaps = 12/189 (6%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + +HF ++G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87
Query: 80 T-HIINGKQVEIKRTIPKGSGQS--KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F YGK+
Sbjct: 88 RPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETI 147
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKAEPKKSSNPPPPP 195
+++ D ++ + RGF FV FD + VD++ + K + I++ E+KKA K+
Sbjct: 148 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHN--CEVKKALSKQEMQT---- 201
Query: 196 SYASNSRGR 204
AS RGR
Sbjct: 202 --ASAQRGR 208
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F YG I +M+DR +G+ RGF F
Sbjct: 104 SREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAF 163
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H IN E+K+ + K Q+
Sbjct: 164 VTFDDHDTVDKIVVQKYHTINLHNCEVKKALSKQEMQT 201
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-E 163
+ +K+F+GG+ ++D L+ F ++GK+ + ++RD +T RSRGFGFV + E VD
Sbjct: 25 QLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Query: 164 MLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
M ++ + +D G VE K+A ++ S P
Sbjct: 85 MSARPHKVD--GRVVEPKRAVSREDSARP 111
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT HF K+G+I D V+MKD T + RGFGFITY+ S++D+ +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR +P+ S + KK+FVG + E ++++F +G +++
Sbjct: 92 RPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDI 151
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKKSS 189
I+ D ET + RGF FV FD + VD+ +L K + ++ G V++KKA PK++
Sbjct: 152 NIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLN--GKMVDVKKALPKQND 203
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVD 74
GA+ K+F+G L D + +F +G+I D I+ D+ TG+ RGF F+ + D VD
Sbjct: 118 GATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVD 177
Query: 75 KVI-EDTHIINGKQVEIKRTIPKGSGQS 101
KV+ + H +NGK V++K+ +PK + Q
Sbjct: 178 KVVLQKQHQLNGKMVDVKKALPKQNDQQ 205
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-M 164
+K+F+GG+ +++ LK F K+G +++ +++D T RSRGFGF+ + ++DE
Sbjct: 30 MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQ 89
Query: 165 LSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
S+ + ID G VE K+A P++ + P
Sbjct: 90 KSRPHKID--GRVVEPKRAVPRQDIDSP 115
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 102/188 (54%), Gaps = 10/188 (5%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + +HF ++G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87
Query: 80 T-HIINGKQVEIKRTIPKGSGQS--KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++ YGK+
Sbjct: 88 RPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETI 147
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPPPPPS 196
+++ D ++ + RGF FV FD + VD+++ + + G E+KKA K+
Sbjct: 148 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKALSKQEMQT----- 201
Query: 197 YASNSRGR 204
AS RGR
Sbjct: 202 -ASAQRGR 208
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT + YG I +M+DR +G+ RGF F
Sbjct: 104 SREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAF 163
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K Q+
Sbjct: 164 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQT 201
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-E 163
+ +K+F+GG+ ++D L+ F ++GK+ + ++RD +T RSRGFGFV + E VD
Sbjct: 25 QLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Query: 164 MLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
M ++ + +D G VE K+A ++ S P
Sbjct: 85 MSARPHKVD--GRVVEPKRAVSREDSARP 111
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVD-KVIE 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 79 DTHIINGKQVEIKRTIPKGSGQS--KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKAEPKKS 188
+++ D ++ + RGF FV FD + VD++ + K + I+ G E+KKA K+
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTIN--GHNCEVKKALSKQE 206
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 172 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-E 163
+ +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGFGFV + E VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 164 MLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
M ++ + +D G VE K+A ++ S P
Sbjct: 93 MCARPHKVD--GRVVEPKRAVSREDSVKP 119
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVD-KVIE 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 79 DTHIINGKQVEIKRTIPKGSGQS--KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKAEPKKS 188
+++ D ++ + RGF FV FD + VD++ + K + I+ G E+KKA K+
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTIN--GHNCEVKKALSKQE 206
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 172 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-E 163
+ +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGFGFV + E VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 164 MLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
M ++ + +D G VE K+A ++ S P
Sbjct: 93 MCARPHKVD--GRVVEPKRAVSREDSVKP 119
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIE 78
K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 79 DTHIINGKQVEIKRTIPKGSGQS--KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKAEPKKS 188
+++ D ++ + RGF FV FD + VD++ + K + I+ G E+KKA K+
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTIN--GHNCEVKKALSKQE 206
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F
Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 171
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
+T+ D VDK V++ H ING E+K+ + K QS
Sbjct: 172 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-E 163
+ +K+F+GG+ ++D L+ F K+G + + ++RD +T RSRGFGFV + E VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 164 MLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
M ++ + +D G VE K+A ++ S P
Sbjct: 93 MCARPHKVD--GRVVEPKRAVSREDSVKP 119
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + +HF ++G +TD V+M+D + + RGFGF+TY VD +
Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74
Query: 80 T-HIINGKQVEIKRTIPKGSGQS--KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H ++G+ VE KR + + KKIFVGGI ED L+ +F +YGK+
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVI 134
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKAEPKKS 188
+I+ D + + RGF FV F+ + VD++ + K + ++ +QV +KA K+
Sbjct: 135 EIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQV--RKALSKQE 185
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 5 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGF 64
S+ D+ G + KIF+GG+ +DT ++F +YG I IM DR +G+ RGF F
Sbjct: 91 SREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 65 ITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 96
+T+ D VDK VI+ H +N ++++ + K
Sbjct: 151 VTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSK 183
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-E 163
+ +K+F+GG+ +++ L+ F ++G + + ++RD + RSRGFGFV + S + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAA 71
Query: 164 MLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
M ++ + +D G VE K+A ++ S+ P
Sbjct: 72 MTARPHKVD--GRVVEPKRAVSREDSSRP 98
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 105/173 (60%), Gaps = 6/173 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 80 T-HIINGKQVEIKRTIPK-GSGQS-KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ KK+FVGGI E L+++F +YGK+
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKAEPKKS 188
+II D ++ + RGFGFV FD + VD++ L K + I+ G E++KA ++
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKALSRQE 180
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSV 72
G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGFGF+T+ D
Sbjct: 94 GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDP 153
Query: 73 VDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
VDK V++ H ING E+++ + + Q
Sbjct: 154 VDKIVLQKYHTINGHNAEVRKALSRQEMQE 183
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-EML 165
+K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGFV F S VD M
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 SKGNMIDMAGTQVEIKKAEPKKSSNPP 192
++ + ID G VE K+A ++ S P
Sbjct: 69 ARPHSID--GRVVEPKRAVAREESGKP 93
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 105/173 (60%), Gaps = 6/173 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 80 T-HIINGKQVEIKRTIPK-GSGQS-KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ KK+FVGGI E L+++F++YGK+
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTI 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKAEPKKS 188
+II D ++ + RGFGFV FD + VD++ L K + I+ G E++KA ++
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKALSRQE 180
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSV 72
G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGFGF+T+ D
Sbjct: 94 GAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDP 153
Query: 73 VDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
VDK V++ H ING E+++ + + Q
Sbjct: 154 VDKIVLQKYHTINGHNAEVRKALSRQEMQE 183
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-EML 165
+K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGFV F S VD M
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 166 SKGNMIDMAGTQVEIKKAEPKKSSNPP 192
++ + ID G VE K+A ++ S P
Sbjct: 69 ARPHSID--GRVVEPKRAVAREESGKP 93
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPK-GSGQS-KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKA 183
+II D ++ + RGFGFV FD + VD++ L K + I+ G E++KA
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTIN--GHNAEVRKA 187
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSV 72
G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGFGF+T+ D
Sbjct: 106 GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDP 165
Query: 73 VDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
VDK V++ H ING E+++ + + Q
Sbjct: 166 VDKIVLQKHHTINGHNAEVRKALSRQEMQE 195
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVD-EMLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
V F S VD M ++ + ID G VE K+A ++ S P
Sbjct: 67 VTFSSMAEVDAAMAARPHSID--GRVVEPKRAVAREESGKP 105
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 105/171 (61%), Gaps = 8/171 (4%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI- 77
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D + V+KV+
Sbjct: 69 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 128
Query: 78 EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGI-PSSVSEDELKNFFSKYGKVLEH 136
+ H ++G+ ++ PK + K KKIFVGG+ P S +E++++ +F ++G++
Sbjct: 129 QKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAI 183
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187
++ D + N+ RGF F+ F EE V ++L K ++G++ EIK A+PK+
Sbjct: 184 ELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKCEIKVAQPKE 233
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPK-GSGQS-KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKA 183
+II D ++ + RGFGFV FD + VD++ L K + I+ G E++KA
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTIN--GHNAEVRKA 187
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSV 72
G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGFGF+T+ D
Sbjct: 106 GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDP 165
Query: 73 VDKV-IEDTHIINGKQVEIKRTIPKGSGQS 101
VDK+ ++ H ING E+++ + + Q
Sbjct: 166 VDKIFLQKYHTINGHNAEVRKALSRQEMQE 195
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVD-EMLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
V F S VD M ++ + ID G VE K+A ++ S P
Sbjct: 67 VTFSSMAEVDAAMAARPHSID--GRVVEPKRAVAREESGKP 105
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPK-GSGQS-KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKA 183
+II D ++ + RGFGFV FD + VD++ L K + I+ G E++KA
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 187
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSV 72
G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGFGF+T+ D
Sbjct: 106 GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDP 165
Query: 73 VDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
VDK V++ H ING E+++ + + Q
Sbjct: 166 VDKIVLQKYHTINGHNAEVRKALSRQEMQE 195
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVD-EMLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
V F S VD M ++ + ID G VE K+A ++ S P
Sbjct: 67 VTFSSMAEVDAAMAARPHSID--GRVVEPKRAVAREESGKP 105
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 80 T-HIINGKQVEIKRTIPK-GSGQS-KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + SG+ KK+FVGGI E L+++F +YGK+
Sbjct: 82 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKA 183
+II D ++ + RGFGFV FD + VD++ L K + I+ G E++KA
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 187
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSV 72
G + K+F+GG+ +DT +F +YG I I+ DR +G+ RGFGF+T+ D
Sbjct: 106 GAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDP 165
Query: 73 VDK-VIEDTHIINGKQVEIKRTIPKGSGQS 101
VDK V++ H ING E+++ + + Q
Sbjct: 166 VDKIVLQKYHTINGHNAEVRKALSRQEMQE 195
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152
T+P + + + +K+F+GG+ +E+ L+N++ ++GK+ + ++RD + RSRGFGF
Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66
Query: 153 VIFDSEEVVD-EMLSKGNMIDMAGTQVEIKKAEPKKSSNPP 192
V F S VD M ++ + ID G VE K+A ++ S P
Sbjct: 67 VTFSSMAEVDAAMAARPHSID--GRVVEPKRAVAREESGKP 105
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 100/174 (57%), Gaps = 14/174 (8%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + VDKV+E
Sbjct: 148 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 207
Query: 79 -DTHIINGKQVEIKRTIPKGSGQSKDFK----TKKIFVGGIPSSVSEDELKNFFSKYGKV 133
H ++GK ++ KR +K K KK+FVGG+ SE+++K +F +G++
Sbjct: 208 LKEHKLDGKLIDPKR--------AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI 259
Query: 134 LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187
++ D +TN RGF F+ + EE V ++L + + + EIK A+PK+
Sbjct: 260 ENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 312
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 36/177 (20%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS- 166
K+F+GG+ S+ +L + S++G+V++ I D T RSRGFGFV+F VD++L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 167 KGNMIDMAGTQVEIKKAEPKKSSNPPPPPS---YASNSRGRSFNDGFGGFGS-------- 215
K + +D G ++ K+A+ K PP + ++ + FG FG
Sbjct: 209 KEHKLD--GKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPM 266
Query: 216 -SYGGFDGGFGPGPYRTPAGLGGRLGGGYGYGSSG---------------------G 250
+ GF Y + L Y SG G
Sbjct: 267 DTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG 323
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 110/201 (54%), Gaps = 14/201 (6%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69
Query: 80 T-HIINGKQVEIKRTIPKGSGQS--KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + KK+FVGGI E L+ +F +YGK+
Sbjct: 70 RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSI 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKAEPKKSSNPPPPP 195
+II D ++ + RGF FV FD + VD++ L K + I+ G E++KA K+
Sbjct: 130 EIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKALSKQEMQDVQN- 186
Query: 196 SYASNSRGRSFNDGFGGFGSS 216
N+RG +F GFG S
Sbjct: 187 --TRNNRGGNF-----GFGDS 200
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 21/112 (18%)
Query: 10 PHTGDG--------------ASPG------KIFIGGLPKDTTYATFNKHFGKYGDITDSV 49
PHT DG A PG K+F+GG+ +DT ++F +YG I
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIE 130
Query: 50 IMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQ 100
I+ D+ +G+ RGF F+T+ D VDK V++ H ING E+++ + K Q
Sbjct: 131 IITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQ 182
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-EML 165
+K+F+GG+ +E+ L+N++ ++G + + ++RD + RSRGFGFV F VD M
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
Query: 166 SKGNMIDMAGTQVEIKKAEPKKSSNPP 192
++ + ID G VE K+A ++ S P
Sbjct: 69 TRPHTID--GRVVEPKRAVAREESAKP 93
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 110/201 (54%), Gaps = 14/201 (6%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL +TT + + ++G +TD V+M+D + + RGFGF+T++ + VD +
Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69
Query: 80 T-HIINGKQVEIKRTIPKGSGQS--KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR + + KK+FVGGI E L+ +F +YGK+
Sbjct: 70 RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIEST 129
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKAEPKKSSNPPPPP 195
+II D ++ + RGFGFV F+ + VD++ L K + I+ G E++KA K+
Sbjct: 130 EIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTIN--GHNAEVRKALSKQEMQDVQN- 186
Query: 196 SYASNSRGRSFNDGFGGFGSS 216
N+RG +F GFG S
Sbjct: 187 --TRNNRGGNF-----GFGDS 200
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 21/115 (18%)
Query: 7 SDNPHTGDG--------------ASPG------KIFIGGLPKDTTYATFNKHFGKYGDIT 46
S PHT DG A PG K+F+GG+ +DT ++F +YG I
Sbjct: 68 SARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIE 127
Query: 47 DSVIMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQ 100
+ I+ D+ +G+ RGFGF+T+ D VDK V++ H ING E+++ + K Q
Sbjct: 128 STEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQ 182
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166
+K+F+GG+ +E+ L+NF+ ++G++ + ++RD + RSRGFGFV F VD +S
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 167 -KGNMIDMAGTQVEIKKAEPKKSSNPP 192
+ + ID G VE K+A ++ S P
Sbjct: 69 ARPHTID--GRVVEPKRAVAREESAKP 93
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 99/174 (56%), Gaps = 14/174 (8%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
K+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + VDKV+E
Sbjct: 51 NKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 110
Query: 79 -DTHIINGKQVEIKRTIPKGSGQSKDFK----TKKIFVGGIPSSVSEDELKNFFSKYGKV 133
H ++GK ++ KR +K K KK+FVGG+ SE+++K +F +G++
Sbjct: 111 LKEHKLDGKLIDPKR--------AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI 162
Query: 134 LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187
++ D +TN RGF F+ + EE V ++L + + + EIK A+PK+
Sbjct: 163 ENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 215
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 14/174 (8%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + V+KV+E
Sbjct: 30 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLE 89
Query: 79 -DTHIINGKQVEIKRTIPKGSGQSKDFK----TKKIFVGGIPSSVSEDELKNFFSKYGKV 133
H ++GK ++ KR +K K KK+FVGG+ SE+++K +F +G++
Sbjct: 90 LKEHKLDGKLIDPKR--------AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI 141
Query: 134 LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187
++ D +TN RGF F+ + EE V ++L + + + EIK A+PK+
Sbjct: 142 ENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 194
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 100/174 (57%), Gaps = 14/174 (8%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + VDKV+E
Sbjct: 29 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 88
Query: 79 -DTHIINGKQVEIKRTIPKGSGQSKDFK----TKKIFVGGIPSSVSEDELKNFFSKYGKV 133
H ++GK ++ KR +K K KK+FVGG+ SE+++K +F +G++
Sbjct: 89 LKEHKLDGKLIDPKR--------AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI 140
Query: 134 LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187
++ D +TN RGF F+ + EE V ++L + + + EIK A+PK+
Sbjct: 141 ENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 193
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 103/170 (60%), Gaps = 7/170 (4%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI- 77
GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D S V+KV+
Sbjct: 75 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLD 134
Query: 78 EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137
+ H ++G+ ++ PK + K KKIFVGG+ +E++++ +F ++G++ +
Sbjct: 135 QKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIE 189
Query: 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187
+ D + N+ RGF F+ F E+ V ++L K ++G++ EIK A+PK+
Sbjct: 190 LPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKCEIKVAQPKE 238
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 100/175 (57%), Gaps = 6/175 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
K+FIGGL TT HF K+G+I D V+MKD T + RGFGFITY+ ++D
Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84
Query: 80 T-HIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136
H I+G+ VE KR +P+ S + KK+FVGG+ E+ L+ +F +G+++
Sbjct: 85 RPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSV 144
Query: 137 QIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKKSSN 190
I+ D +T + RGF F+ FD + VD+ +L K + I +++KKA K+ +
Sbjct: 145 NIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSI--KNKTLDVKKAIAKQDMD 197
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 4 KSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFG 63
+ + D+P+ G A+ K+F+GGL D ++F +G I I+ D+ TG+ RGF
Sbjct: 102 RQEIDSPNAG--ATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFA 159
Query: 64 FITYADPSVVDKVI-EDTHIINGKQVEIKRTIPK 96
FI + D VDK+I + TH I K +++K+ I K
Sbjct: 160 FIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAK 193
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164
+ +K+F+GG+ ++D LK F K+G +++ +++D +T RSRGFGF+ + ++D
Sbjct: 22 QLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA 81
Query: 165 L-SKGNMIDMAGTQVEIKKAEPKKSSNPP 192
++ + ID G VE K+A P++ + P
Sbjct: 82 QNARPHKID--GRTVEPKRAVPRQEIDSP 108
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 6/169 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL DTT +F K+GD+ D + D TG+ RGFGF+ + + VDKV+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 79 DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR + + KKIFVGG+ E++++ +F +G+V ++
Sbjct: 156 KEHKLNGKVIDPKRAKAMKTKEP----VKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 211
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187
D++TN+ RGF F+ F EE V +++ K ++ ++ EIK A K+
Sbjct: 212 PMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVAMSKE 259
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 39/228 (17%)
Query: 92 RTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFG 151
R + Q +++K +F+GG+ ++ +LK++FSK+G V++ + D T RSRGFG
Sbjct: 83 RHTEAATAQREEWK---MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFG 139
Query: 152 FVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNP----------PPPPSYASNS 201
FV+F E VD+++ + + G ++ K+A+ K+ P P P
Sbjct: 140 FVLFKESESVDKVMDQKEH-KLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPE----E 194
Query: 202 RGRSFNDGFGGFGSSYGGFDG------GFGPGPYRTPAGLGGRLGGGY-GYGSSGGEYGG 254
+ R + GFG S D GF ++ + + Y G S E
Sbjct: 195 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 254
Query: 255 GYGGFGGSSLGGY-------------RGEPSLGYSGRFGPYGG-GFGS 288
+ G PS ++ + Y G+GS
Sbjct: 255 AMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGS 302
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 101/175 (57%), Gaps = 16/175 (9%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
GK+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D VDKV+E
Sbjct: 26 GKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 85
Query: 79 -DTHIINGKQVEIKRTIPKGSGQSKDFK----TKKIFVGGIPSSVSEDELKNFFSKYGKV 133
+ H ++GK ++ KR +K K KK+FVGG+ +E+++K +F +G++
Sbjct: 86 TNEHKLDGKLIDPKR--------AKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEI 137
Query: 134 LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QVEIKKAEPKK 187
++ D +TN RGF FV + EE V ++L + GT + EIK A+PK+
Sbjct: 138 ENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE--SRFHQIGTGKCEIKAAQPKE 190
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
P K+F+GGL +TT ++FG +G+I + + D T + RGF F+TY V K++
Sbjct: 110 PKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLL 169
Query: 78 EDT-HIINGKQVEIKRTIPK 96
E H I + EIK PK
Sbjct: 170 ESRFHQIGTGKCEIKAAQPK 189
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 70/193 (36%), Gaps = 35/193 (18%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ S+ +L + S++G+VL+ I D T RSRGFGFV+F VD++L +
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVL-E 85
Query: 168 GNMIDMAGTQVEIKKAEPKKSSNPPPPPS---YASNSRGRSFNDGFGGFGSSYGGFDGGF 224
N + G ++ K+A+ K PP + + FGGFG
Sbjct: 86 TNEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIEN------ 139
Query: 225 GPGPYRTPAGLGGRLGGGYGYGSSGGE------YGGGYGGFGGSSLGGYRGEPSLGYS-- 276
P G+ + + GE + G +P Y
Sbjct: 140 ----IELPIDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKAAQPKEVYRQQ 195
Query: 276 ------------- 276
Sbjct: 196 QQKQQRGGRGAVT 208
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 102/181 (56%), Gaps = 9/181 (4%)
Query: 11 HTGDGAS---PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY 67
HT A+ K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ +
Sbjct: 86 HTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 68 ADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNF 126
+ VDKV+ + H +NGK ++ KR + + KKIFVGG+ E++++ +
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP----VKKIFVGGLSPDTPEEKIREY 201
Query: 127 FSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186
F +G+V ++ D++TN+ RGF F+ F EE V +++ K ++ ++ EIK A K
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVAMSK 260
Query: 187 K 187
+
Sbjct: 261 E 261
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 92 RTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFG 151
R + Q +++K +F+GG+ ++ +LK++FSK+G+V++ + D T RSRGFG
Sbjct: 85 RHTEAAAAQREEWK---MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141
Query: 152 FVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNP 191
FV+F E VD+++ + + G ++ K+A+ K+ P
Sbjct: 142 FVLFKESESVDKVMDQKEH-KLNGKVIDPKRAKAMKTKEP 180
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 100/170 (58%), Gaps = 8/170 (4%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE- 78
K+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D VDKV+E
Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 94
Query: 79 DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H ++GK ++ KR + Q K+ KK+FVGG+ +E+++K +F +G++ ++
Sbjct: 95 KEHKLDGKLIDPKRA---KALQGKE-PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIEL 150
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QVEIKKAEPKK 187
D +TN RGF FV + EE V ++L + GT + EIK A+PK+
Sbjct: 151 PMDTKTNERRGFCFVTYTDEEPVQKLLE--SRFHQIGTGKCEIKAAQPKE 198
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77
P K+F+GGL +TT ++FG +G+I + + D T + RGF F+TY D V K++
Sbjct: 118 PKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLL 177
Query: 78 EDT-HIINGKQVEIKRTIPK 96
E H I + EIK PK
Sbjct: 178 ESRFHQIGTGKCEIKAAQPK 197
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 98/169 (57%), Gaps = 6/169 (3%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-E 78
K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 79 DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H +NGK ++ KR + + KKIFVGG+ E++++ +F +G+V ++
Sbjct: 158 KEHKLNGKVIDPKRAKAMKTKEP----VKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187
D++TN+ RGF F+ F EE V +++ K ++ ++ EIK A K+
Sbjct: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVAMSKE 261
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167
K+F+GG+ ++ +LK++FSK+G+V++ + D T RSRGFGFV+F E VD+++ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 168 GNMIDMAGTQVEIKKAEPKKSSNP 191
+ G ++ K+A+ K+ P
Sbjct: 158 KEH-KLNGKVIDPKRAKAMKTKEP 180
>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1
Length = 414
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 12/172 (6%)
Query: 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80
+ + GLP TT ++F +G++ + KD TG +GFGF+ + + KV+
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 81 HIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H+I+G+ + K +P S QS+D +++K+FVG ++EDEL+ FFS+YG V++ I
Sbjct: 166 HMIDGRWCDCK--LP-NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI 222
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 190
+ R F FV F +++ + G + + G V I AEPK +SN
Sbjct: 223 PKPF-----RAFAFVTFADDQIAQSLC--GEDLIIKGISVHISNAEPKHNSN 267
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 88 VEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRS 147
V++KR + K T + V G+P +E +LK +FS +G+VL Q+ +D +T S
Sbjct: 94 VKVKRAVQK---------TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHS 144
Query: 148 RGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPP--PPPSYASNSRGRS 205
+GFGFV F E +++S+ +MID G + K K+S + P +
Sbjct: 145 KGFGFVRFTEYETQVKVMSQRHMID--GRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDM 202
Query: 206 FNDGFGGFGSSYGGFDGGFGPGPYRTPA 233
D F S YG F P P+R A
Sbjct: 203 TEDELREFFSQYGDVMDVFIPKPFRAFA 230
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQP-R 60
SK D P K+F+G +D T + F +YGD+ D I K P R
Sbjct: 179 NSKQSQDEP-----LRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK------PFR 227
Query: 61 GFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPK 96
F F+T+AD + + + II G V I PK
Sbjct: 228 AFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPK 263
>sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1
Length = 414
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 12/172 (6%)
Query: 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80
+ + GLP TT ++F +G++ + KD TG +GFGF+ + + KV+
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 81 HIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138
H+I+G+ + K +P S QS+D +++K+FVG ++EDEL+ FFS+YG V++ I
Sbjct: 166 HMIDGRWCDCK--LP-NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI 222
Query: 139 IRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 190
+ R F FV F +++ + G + + G V I AEPK +SN
Sbjct: 223 PKPF-----RAFAFVTFADDQIAQSLC--GEDLIIKGISVHISNAEPKHNSN 267
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 88 VEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRS 147
V++KR + K T + V G+P +E +LK +FS +G+VL Q+ +D +T S
Sbjct: 94 VKVKRAVQK---------TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHS 144
Query: 148 RGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPP--PPPSYASNSRGRS 205
+GFGFV F E +++S+ +MID G + K K+S + P +
Sbjct: 145 KGFGFVRFTEYETQVKVMSQRHMID--GRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDM 202
Query: 206 FNDGFGGFGSSYGGFDGGFGPGPYRTPA 233
D F S YG F P P+R A
Sbjct: 203 TEDELREFFSQYGDVMDVFIPKPFRAFA 230
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 2 GSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQP-R 60
SK D P K+F+G +D T + F +YGD+ D I K P R
Sbjct: 179 NSKQSQDEP-----LRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK------PFR 227
Query: 61 GFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPK 96
F F+T+AD + + + II G V I PK
Sbjct: 228 AFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPK 263
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 9/170 (5%)
Query: 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80
+ + GLP TT +F +G++ + KD TG +GFGF+ +AD KV+
Sbjct: 107 LIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQR 166
Query: 81 HIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIR 140
H+I+G+ + K +P + +++K+FVG +S +EL+ FFS+YG+V++ I +
Sbjct: 167 HMIDGRWCDCK--LPNSKSPDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPK 224
Query: 141 DHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 190
R F FV F ++V + G + + G V + AEPK ++N
Sbjct: 225 PF-----RAFAFVTFADDQVAQSLC--GEDLIIKGVSVHVSTAEPKHNNN 267
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 18/147 (12%)
Query: 88 VEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRS 147
V+IKR + K T + V G+P +E +LK++FS +G+V+ Q+ +D +T S
Sbjct: 95 VKIKRAVTK---------TSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHS 145
Query: 148 RGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPPPPPSYASNSRGRSFN 207
+GFGFV F E +++S+ +MID G + K S +P P GR
Sbjct: 146 KGFGFVRFADYETQVKVMSQRHMID--GRWCDCKLP---NSKSPDEPMRSRKVFVGRCTE 200
Query: 208 D----GFGGFGSSYGGFDGGFGPGPYR 230
D F S YG F P P+R
Sbjct: 201 DMSAEELRQFFSQYGEVVDVFIPKPFR 227
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQP-RGFGFITYADPSVVDKVIE 78
K+F+G +D + + F +YG++ D I K P R F F+T+AD V +
Sbjct: 192 KVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPK------PFRAFAFVTFADDQVAQSLCG 245
Query: 79 DTHIINGKQVEIKRTIPK 96
+ II G V + PK
Sbjct: 246 EDLIIKGVSVHVSTAEPK 263
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%), Gaps = 8/178 (4%)
Query: 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
K+F+G LP D F G + + ++ +R T + RGFGF+T + +K +E
Sbjct: 55 AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 114
Query: 79 DTH--IINGKQVEIKRTIPKGSGQSK---DFK-TKKIFVGGIPSSVSEDELKNFFSKYGK 132
+ ++G+Q+ + + P+GS + DF+ + +++VG +P V L+ FS++GK
Sbjct: 115 LLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGK 174
Query: 133 VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAEPKKS 188
V+ +++ D ET RSRGFGFV SE V++ ++ G +D +V + + P+++
Sbjct: 175 VVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRA 232
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD 156
G G S+ + K+FVG +P V ++L F G V ++I + ET+RSRGFGFV
Sbjct: 45 GQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMS 104
Query: 157 SEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPPP 193
+ E ++ + N DM G Q+ + KA P+ S P
Sbjct: 105 TVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAP 141
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSV 72
GD ++++G LP D + + F ++G + + ++ DR TG+ RGFGF+T + S
Sbjct: 143 GDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESE 202
Query: 73 VDKVIE--DTHIINGKQVEI 90
V+ I D ++G+ V +
Sbjct: 203 VNDAIAALDGQTLDGRAVRV 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.142 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,817,909
Number of Sequences: 539616
Number of extensions: 11017830
Number of successful extensions: 140598
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1840
Number of HSP's successfully gapped in prelim test: 1359
Number of HSP's that attempted gapping in prelim test: 36624
Number of HSP's gapped (non-prelim): 29836
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)