Query 018875
Match_columns 349
No_of_seqs 402 out of 2742
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:46:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 5.3E-37 1.2E-41 284.9 25.8 172 13-188 102-277 (346)
2 TIGR01645 half-pint poly-U bin 100.0 2.7E-31 5.8E-36 259.1 21.9 174 15-188 104-286 (612)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 8.5E-30 1.8E-34 248.3 28.9 165 15-188 55-309 (578)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-30 3.6E-35 245.4 22.7 167 17-187 2-172 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 3.2E-30 6.9E-35 251.7 24.0 174 13-186 84-266 (457)
6 KOG0148 Apoptosis-promoting RN 100.0 1.7E-30 3.7E-35 222.1 18.3 173 12-190 56-242 (321)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-29 3E-34 239.1 23.6 173 16-188 87-351 (352)
8 KOG0117 Heterogeneous nuclear 100.0 4.5E-30 9.8E-35 233.2 15.5 168 15-190 161-335 (506)
9 KOG0144 RNA-binding protein CU 100.0 6.3E-30 1.4E-34 231.2 14.0 173 14-190 30-210 (510)
10 TIGR01628 PABP-1234 polyadenyl 100.0 1.8E-28 3.9E-33 245.0 20.2 164 20-186 2-167 (562)
11 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-27 2.8E-32 238.8 20.8 173 14-188 174-366 (562)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 9.9E-27 2.1E-31 230.1 22.6 169 13-187 170-376 (509)
13 KOG0117 Heterogeneous nuclear 100.0 6.1E-27 1.3E-31 212.8 18.5 166 14-189 79-251 (506)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.1E-26 2.3E-31 227.2 20.9 161 17-187 1-175 (481)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.8E-26 1E-30 222.7 21.8 165 15-186 272-480 (481)
16 KOG0131 Splicing factor 3b, su 99.9 6.1E-27 1.3E-31 189.6 12.8 172 14-188 5-179 (203)
17 KOG0145 RNA-binding protein EL 99.9 2.6E-26 5.7E-31 195.3 15.7 169 15-187 38-210 (360)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.2E-25 2.6E-30 222.4 22.1 171 16-186 293-502 (509)
19 KOG4205 RNA-binding protein mu 99.9 1.2E-26 2.5E-31 209.6 12.8 175 17-192 5-182 (311)
20 KOG0127 Nucleolar protein fibr 99.9 5.8E-26 1.3E-30 210.9 16.2 169 19-188 6-198 (678)
21 KOG0109 RNA-binding protein LA 99.9 2.1E-26 4.6E-31 198.9 11.9 150 19-190 3-154 (346)
22 KOG0127 Nucleolar protein fibr 99.9 2.6E-25 5.7E-30 206.5 17.1 169 18-187 117-379 (678)
23 KOG0145 RNA-binding protein EL 99.9 2.6E-24 5.6E-29 183.2 15.7 173 14-186 123-358 (360)
24 TIGR01622 SF-CC1 splicing fact 99.9 5.2E-23 1.1E-27 200.9 22.2 166 17-186 185-448 (457)
25 KOG0124 Polypyrimidine tract-b 99.9 4.3E-24 9.2E-29 189.7 12.2 170 18-187 113-291 (544)
26 KOG0123 Polyadenylate-binding 99.9 6.6E-23 1.4E-27 191.7 17.1 154 19-190 2-157 (369)
27 KOG0148 Apoptosis-promoting RN 99.9 7.9E-23 1.7E-27 175.2 11.6 141 15-188 3-144 (321)
28 KOG0110 RNA-binding protein (R 99.9 1.1E-22 2.4E-27 194.8 12.7 170 17-186 514-693 (725)
29 KOG0146 RNA-binding protein ET 99.9 3.2E-22 6.9E-27 171.1 12.1 178 12-190 13-369 (371)
30 KOG0147 Transcriptional coacti 99.9 9.4E-23 2E-27 190.5 7.0 177 12-188 173-360 (549)
31 KOG4211 Splicing factor hnRNP- 99.9 6.2E-21 1.3E-25 176.2 16.5 167 14-185 6-181 (510)
32 KOG0144 RNA-binding protein CU 99.9 1.4E-21 3E-26 177.3 11.2 177 11-188 117-506 (510)
33 KOG0123 Polyadenylate-binding 99.8 1.9E-20 4E-25 175.2 15.7 162 21-186 79-246 (369)
34 KOG0105 Alternative splicing f 99.8 1.9E-19 4.1E-24 146.3 16.6 151 15-175 3-177 (241)
35 PLN03134 glycine-rich RNA-bind 99.8 1.6E-19 3.4E-24 147.7 15.3 86 103-188 31-116 (144)
36 TIGR01645 half-pint poly-U bin 99.8 2.5E-18 5.5E-23 168.5 21.7 79 16-94 202-282 (612)
37 KOG4206 Spliceosomal protein s 99.8 5.4E-18 1.2E-22 143.0 15.5 161 16-184 7-220 (221)
38 KOG4212 RNA-binding protein hn 99.8 2.3E-17 5E-22 150.2 17.1 167 16-184 42-292 (608)
39 KOG0106 Alternative splicing f 99.7 3E-18 6.5E-23 146.1 7.3 148 19-182 2-167 (216)
40 PLN03134 glycine-rich RNA-bind 99.7 2.9E-17 6.4E-22 134.3 12.7 83 14-96 30-114 (144)
41 KOG0122 Translation initiation 99.7 2.2E-16 4.7E-21 134.2 13.3 83 104-186 187-269 (270)
42 KOG0110 RNA-binding protein (R 99.7 1.4E-16 2.9E-21 153.4 13.4 165 14-184 381-596 (725)
43 KOG0147 Transcriptional coacti 99.7 1.4E-16 2.9E-21 149.5 11.6 162 20-186 280-528 (549)
44 KOG1548 Transcription elongati 99.7 3.6E-15 7.8E-20 132.6 18.7 167 15-186 131-352 (382)
45 KOG0113 U1 small nuclear ribon 99.7 1.1E-16 2.3E-21 139.6 8.2 103 91-193 86-188 (335)
46 TIGR01659 sex-lethal sex-letha 99.7 3.5E-16 7.6E-21 145.8 11.5 85 102-186 103-187 (346)
47 KOG1457 RNA binding protein (c 99.7 2.1E-15 4.5E-20 126.4 14.5 155 15-173 31-273 (284)
48 KOG0121 Nuclear cap-binding pr 99.7 4.3E-16 9.3E-21 119.5 8.2 82 105-186 35-116 (153)
49 KOG0149 Predicted RNA-binding 99.6 3.5E-16 7.6E-21 132.4 7.5 81 15-95 9-90 (247)
50 KOG4211 Splicing factor hnRNP- 99.6 2.6E-14 5.6E-19 132.7 20.2 166 16-184 101-356 (510)
51 KOG0120 Splicing factor U2AF, 99.6 4.8E-15 1E-19 140.8 14.1 177 9-185 280-491 (500)
52 PF00076 RRM_1: RNA recognitio 99.6 2.3E-15 5E-20 107.6 8.7 70 109-179 1-70 (70)
53 COG0724 RNA-binding proteins ( 99.6 1.1E-14 2.3E-19 131.7 15.0 149 18-166 115-285 (306)
54 KOG0107 Alternative splicing f 99.6 3E-15 6.4E-20 121.2 8.2 78 105-187 9-86 (195)
55 KOG0149 Predicted RNA-binding 99.6 3.2E-15 6.8E-20 126.7 8.6 83 102-185 8-90 (247)
56 TIGR01648 hnRNP-R-Q heterogene 99.6 5.8E-15 1.2E-19 144.8 11.7 110 16-133 231-368 (578)
57 KOG4207 Predicted splicing fac 99.6 1.1E-14 2.3E-19 120.8 8.2 83 105-187 12-94 (256)
58 PF14259 RRM_6: RNA recognitio 99.6 2.4E-14 5.2E-19 102.5 9.0 70 109-179 1-70 (70)
59 KOG0125 Ataxin 2-binding prote 99.6 1.3E-14 2.9E-19 128.1 9.1 82 103-186 93-174 (376)
60 KOG1456 Heterogeneous nuclear 99.6 1.1E-13 2.4E-18 124.1 14.8 171 7-188 20-201 (494)
61 KOG0122 Translation initiation 99.5 2.1E-14 4.6E-19 122.1 9.4 82 15-96 186-269 (270)
62 PF00076 RRM_1: RNA recognitio 99.5 2.7E-14 5.9E-19 102.0 8.4 68 21-89 1-70 (70)
63 KOG0121 Nuclear cap-binding pr 99.5 1.4E-14 3E-19 111.2 7.1 82 13-94 31-114 (153)
64 KOG1190 Polypyrimidine tract-b 99.5 3.5E-13 7.5E-18 122.3 17.2 159 18-185 297-490 (492)
65 KOG0130 RNA-binding protein RB 99.5 1.8E-14 3.9E-19 111.5 7.6 87 102-188 68-154 (170)
66 PLN03120 nucleic acid binding 99.5 5.7E-14 1.2E-18 123.1 11.3 79 105-187 3-81 (260)
67 KOG4212 RNA-binding protein hn 99.5 2.5E-13 5.5E-18 124.1 15.4 74 105-183 535-608 (608)
68 KOG1365 RNA-binding protein Fu 99.5 1.5E-14 3.3E-19 130.0 7.2 168 16-185 159-361 (508)
69 KOG0129 Predicted RNA-binding 99.5 3.1E-13 6.7E-18 126.4 15.7 167 14-181 255-449 (520)
70 KOG0125 Ataxin 2-binding prote 99.5 4.4E-14 9.6E-19 124.8 9.5 89 11-101 89-179 (376)
71 KOG0124 Polypyrimidine tract-b 99.5 3E-13 6.4E-18 121.0 14.6 172 14-185 206-534 (544)
72 KOG0107 Alternative splicing f 99.5 3.3E-14 7.2E-19 115.1 7.6 76 16-96 8-85 (195)
73 KOG0113 U1 small nuclear ribon 99.5 6.9E-14 1.5E-18 122.2 10.1 89 7-95 90-180 (335)
74 KOG1190 Polypyrimidine tract-b 99.5 5.7E-14 1.2E-18 127.4 9.5 158 14-181 24-221 (492)
75 KOG0111 Cyclophilin-type pepti 99.5 2.5E-14 5.5E-19 119.6 6.0 89 103-191 7-95 (298)
76 PF14259 RRM_6: RNA recognitio 99.5 1.9E-13 4.1E-18 97.8 8.5 68 21-89 1-70 (70)
77 PLN03120 nucleic acid binding 99.5 4.1E-13 8.9E-18 117.7 11.2 76 18-96 4-80 (260)
78 KOG0126 Predicted RNA-binding 99.5 8.8E-15 1.9E-19 119.0 0.6 104 82-186 12-115 (219)
79 KOG0105 Alternative splicing f 99.5 4.9E-13 1.1E-17 109.2 10.1 79 105-186 5-83 (241)
80 smart00362 RRM_2 RNA recogniti 99.4 6.9E-13 1.5E-17 94.3 9.4 72 108-181 1-72 (72)
81 PLN03213 repressor of silencin 99.4 3.6E-13 7.9E-18 124.8 9.5 78 105-186 9-88 (759)
82 KOG0114 Predicted RNA-binding 99.4 8.2E-13 1.8E-17 97.8 8.9 82 103-187 15-96 (124)
83 smart00360 RRM RNA recognition 99.4 7.8E-13 1.7E-17 93.7 8.8 71 111-181 1-71 (71)
84 COG0724 RNA-binding proteins ( 99.4 1E-12 2.2E-17 118.7 11.7 80 106-185 115-194 (306)
85 PLN03121 nucleic acid binding 99.4 1.3E-12 2.8E-17 112.8 11.3 78 105-186 4-81 (243)
86 KOG0131 Splicing factor 3b, su 99.4 3.8E-13 8.3E-18 109.7 6.4 83 104-186 7-89 (203)
87 KOG0108 mRNA cleavage and poly 99.4 2E-13 4.3E-18 129.2 5.4 79 19-97 19-99 (435)
88 KOG0111 Cyclophilin-type pepti 99.4 5.2E-13 1.1E-17 111.8 7.1 89 12-100 4-94 (298)
89 KOG0130 RNA-binding protein RB 99.4 8E-13 1.7E-17 102.5 7.4 90 9-98 63-154 (170)
90 KOG0114 Predicted RNA-binding 99.4 2.5E-12 5.4E-17 95.2 9.5 93 1-96 1-95 (124)
91 PLN03213 repressor of silencin 99.4 7.1E-13 1.5E-17 122.9 7.6 79 14-96 6-88 (759)
92 KOG4207 Predicted splicing fac 99.4 6.9E-13 1.5E-17 110.2 6.4 83 12-94 7-91 (256)
93 KOG0120 Splicing factor U2AF, 99.4 1.9E-12 4.2E-17 123.2 9.4 165 16-186 173-369 (500)
94 cd00590 RRM RRM (RNA recogniti 99.4 6.2E-12 1.3E-16 89.9 9.9 74 108-182 1-74 (74)
95 PLN03121 nucleic acid binding 99.4 5.1E-12 1.1E-16 109.1 10.8 76 17-95 4-80 (243)
96 KOG1456 Heterogeneous nuclear 99.4 7.7E-11 1.7E-15 106.1 18.4 167 12-185 281-490 (494)
97 KOG0126 Predicted RNA-binding 99.3 2E-13 4.4E-18 111.1 1.0 81 16-96 33-115 (219)
98 KOG0109 RNA-binding protein LA 99.3 1.8E-12 3.8E-17 113.1 6.7 73 107-187 3-75 (346)
99 smart00362 RRM_2 RNA recogniti 99.3 7.6E-12 1.7E-16 88.9 8.8 69 20-90 1-71 (72)
100 KOG0415 Predicted peptidyl pro 99.3 2.9E-12 6.2E-17 114.4 6.3 84 103-186 236-319 (479)
101 KOG4210 Nuclear localization s 99.3 5.7E-12 1.2E-16 114.1 8.3 172 16-188 86-266 (285)
102 KOG4454 RNA binding protein (R 99.3 5E-13 1.1E-17 111.9 1.2 148 13-180 4-157 (267)
103 smart00360 RRM RNA recognition 99.3 1.4E-11 2.9E-16 87.2 8.4 68 23-90 1-70 (71)
104 KOG0108 mRNA cleavage and poly 99.3 6.6E-12 1.4E-16 118.9 8.5 82 107-188 19-100 (435)
105 smart00361 RRM_1 RNA recogniti 99.3 2.4E-11 5.2E-16 86.9 7.9 61 120-180 2-69 (70)
106 cd00590 RRM RRM (RNA recogniti 99.2 6.1E-11 1.3E-15 84.6 9.5 71 20-91 1-73 (74)
107 PF13893 RRM_5: RNA recognitio 99.2 3E-11 6.5E-16 82.4 7.3 56 123-183 1-56 (56)
108 KOG0116 RasGAP SH3 binding pro 99.2 1E-10 2.2E-15 110.3 12.3 81 107-188 289-369 (419)
109 KOG0128 RNA-binding protein SA 99.2 9E-13 1.9E-17 129.6 -2.3 148 17-185 666-814 (881)
110 KOG1365 RNA-binding protein Fu 99.2 4.5E-11 9.7E-16 107.9 8.3 170 13-184 55-241 (508)
111 KOG4205 RNA-binding protein mu 99.2 3.9E-11 8.6E-16 109.0 7.3 118 17-134 96-215 (311)
112 KOG0226 RNA-binding proteins [ 99.1 4.1E-11 9E-16 102.8 5.2 170 16-186 94-270 (290)
113 KOG0132 RNA polymerase II C-te 99.1 1.2E-10 2.6E-15 113.7 8.0 111 12-128 415-528 (894)
114 KOG0415 Predicted peptidyl pro 99.1 1.3E-10 2.8E-15 103.9 6.6 89 8-96 229-319 (479)
115 KOG0112 Large RNA-binding prot 99.1 8E-11 1.7E-15 116.6 5.3 163 12-187 366-532 (975)
116 smart00361 RRM_1 RNA recogniti 99.1 6.8E-10 1.5E-14 79.4 7.6 59 32-90 2-69 (70)
117 KOG0132 RNA polymerase II C-te 99.0 4.9E-10 1.1E-14 109.4 8.1 76 105-186 420-495 (894)
118 KOG1995 Conserved Zn-finger pr 99.0 3.5E-08 7.6E-13 89.2 18.7 86 103-188 63-156 (351)
119 KOG0153 Predicted RNA-binding 99.0 1E-09 2.2E-14 98.2 8.4 81 100-186 222-303 (377)
120 KOG0153 Predicted RNA-binding 99.0 1.2E-09 2.6E-14 97.8 8.7 81 10-96 220-303 (377)
121 KOG4208 Nucleolar RNA-binding 99.0 1.5E-09 3.3E-14 90.7 8.2 84 103-186 46-130 (214)
122 KOG4307 RNA binding protein RB 99.0 3E-09 6.6E-14 102.7 10.3 75 108-182 869-943 (944)
123 PF13893 RRM_5: RNA recognitio 99.0 2.1E-09 4.5E-14 73.2 6.6 54 35-93 1-56 (56)
124 KOG0533 RRM motif-containing p 99.0 3E-09 6.5E-14 93.2 9.1 86 103-189 80-165 (243)
125 KOG4206 Spliceosomal protein s 98.9 2.4E-09 5.1E-14 91.0 7.7 82 105-189 8-93 (221)
126 KOG4208 Nucleolar RNA-binding 98.9 1.1E-08 2.3E-13 85.7 11.3 83 14-96 45-130 (214)
127 KOG4661 Hsp27-ERE-TATA-binding 98.9 2.9E-09 6.3E-14 100.7 8.4 80 106-185 405-484 (940)
128 KOG2193 IGF-II mRNA-binding pr 98.9 1.5E-10 3.2E-15 105.8 -1.1 155 19-190 2-161 (584)
129 KOG4307 RNA binding protein RB 98.9 6.5E-09 1.4E-13 100.5 8.2 170 13-183 306-511 (944)
130 KOG0146 RNA-binding protein ET 98.9 4.3E-09 9.4E-14 91.0 6.1 84 14-97 281-366 (371)
131 KOG4209 Splicing factor RNPS1, 98.8 6.5E-09 1.4E-13 91.3 6.6 85 101-186 96-180 (231)
132 KOG4661 Hsp27-ERE-TATA-binding 98.8 3.4E-08 7.4E-13 93.6 9.1 80 16-95 403-484 (940)
133 KOG0116 RasGAP SH3 binding pro 98.7 3.1E-08 6.7E-13 93.6 8.3 79 17-95 287-366 (419)
134 KOG1548 Transcription elongati 98.7 6E-08 1.3E-12 87.0 9.2 81 104-185 132-220 (382)
135 KOG0533 RRM motif-containing p 98.7 7.4E-08 1.6E-12 84.5 8.9 84 14-98 79-164 (243)
136 KOG4454 RNA binding protein (R 98.7 8.2E-09 1.8E-13 86.9 2.5 78 105-184 8-85 (267)
137 KOG1457 RNA binding protein (c 98.7 1.7E-07 3.7E-12 79.3 10.3 85 105-189 33-121 (284)
138 KOG4660 Protein Mei2, essentia 98.6 3.9E-08 8.5E-13 93.4 5.5 160 13-185 70-249 (549)
139 KOG0106 Alternative splicing f 98.6 5.7E-08 1.2E-12 83.4 5.3 73 107-187 2-74 (216)
140 KOG4676 Splicing factor, argin 98.6 1.9E-08 4.2E-13 91.3 2.0 153 17-174 6-214 (479)
141 KOG1855 Predicted RNA-binding 98.6 9.7E-08 2.1E-12 87.9 6.1 93 89-181 214-319 (484)
142 PF04059 RRM_2: RNA recognitio 98.5 5.3E-07 1.1E-11 67.9 8.6 80 107-186 2-87 (97)
143 KOG4660 Protein Mei2, essentia 98.5 5.5E-08 1.2E-12 92.4 3.9 78 97-179 66-143 (549)
144 KOG4209 Splicing factor RNPS1, 98.5 1.5E-07 3.2E-12 82.8 5.7 83 12-94 95-178 (231)
145 PF04059 RRM_2: RNA recognitio 98.5 9.4E-07 2E-11 66.5 8.8 61 19-79 2-64 (97)
146 KOG0226 RNA-binding proteins [ 98.4 2.6E-07 5.5E-12 79.8 5.0 82 13-94 185-268 (290)
147 KOG1995 Conserved Zn-finger pr 98.4 5.3E-07 1.1E-11 81.7 5.7 89 9-97 57-155 (351)
148 KOG0128 RNA-binding protein SA 98.3 3.6E-08 7.9E-13 97.7 -2.9 158 17-174 570-735 (881)
149 PF08777 RRM_3: RNA binding mo 98.3 8.3E-07 1.8E-11 68.4 4.9 70 107-182 2-76 (105)
150 KOG0151 Predicted splicing reg 98.3 1.3E-06 2.8E-11 85.3 7.0 85 103-187 171-258 (877)
151 KOG0151 Predicted splicing reg 98.2 5.4E-06 1.2E-10 81.0 8.6 80 15-94 171-255 (877)
152 PF11608 Limkain-b1: Limkain b 98.2 5.6E-06 1.2E-10 59.5 6.3 73 107-189 3-80 (90)
153 KOG4849 mRNA cleavage factor I 98.1 3.5E-06 7.5E-11 75.9 3.7 78 105-182 79-158 (498)
154 PF14605 Nup35_RRM_2: Nup53/35 97.9 2.8E-05 6.1E-10 51.9 4.9 52 107-165 2-53 (53)
155 COG5175 MOT2 Transcriptional r 97.8 7.8E-05 1.7E-09 67.0 7.4 87 100-186 108-203 (480)
156 PF14605 Nup35_RRM_2: Nup53/35 97.8 5.7E-05 1.2E-09 50.4 5.0 53 18-77 1-53 (53)
157 PF08777 RRM_3: RNA binding mo 97.8 2.8E-05 6.1E-10 59.9 3.8 57 19-81 2-58 (105)
158 KOG4210 Nuclear localization s 97.6 6.3E-05 1.4E-09 68.5 4.9 82 17-98 183-266 (285)
159 PF11608 Limkain-b1: Limkain b 97.6 0.00027 5.9E-09 51.0 6.1 67 19-95 3-76 (90)
160 KOG4849 mRNA cleavage factor I 97.6 3.3E-05 7.3E-10 69.6 1.9 75 17-91 79-157 (498)
161 KOG1855 Predicted RNA-binding 97.5 0.00012 2.7E-09 67.9 4.6 68 14-81 227-307 (484)
162 KOG0115 RNA-binding protein p5 97.5 0.00028 6E-09 61.4 6.3 89 82-182 18-110 (275)
163 KOG2202 U2 snRNP splicing fact 97.4 7E-05 1.5E-09 65.2 2.2 64 121-185 83-147 (260)
164 PF08675 RNA_bind: RNA binding 97.4 0.00058 1.2E-08 49.3 6.4 59 14-81 5-63 (87)
165 KOG0129 Predicted RNA-binding 97.4 0.00067 1.5E-08 64.7 8.0 68 12-79 364-432 (520)
166 KOG2314 Translation initiation 97.3 0.00042 9.2E-09 66.5 6.0 78 104-182 56-140 (698)
167 PF10309 DUF2414: Protein of u 97.2 0.0019 4.1E-08 44.2 6.9 56 105-168 4-62 (62)
168 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0015 3.3E-08 49.5 6.9 72 105-184 5-90 (100)
169 COG5175 MOT2 Transcriptional r 97.2 0.00077 1.7E-08 60.8 5.9 111 16-126 112-240 (480)
170 KOG2202 U2 snRNP splicing fact 97.2 0.00011 2.4E-09 64.0 0.5 61 33-94 83-146 (260)
171 KOG2314 Translation initiation 97.1 0.00048 1E-08 66.1 4.5 76 16-92 56-140 (698)
172 KOG2591 c-Mpl binding protein, 97.1 0.0011 2.4E-08 63.5 6.7 70 105-181 174-247 (684)
173 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0035 7.6E-08 47.6 7.1 78 15-93 3-89 (100)
174 KOG3973 Uncharacterized conser 97.0 0.02 4.4E-07 52.1 12.9 7 119-125 199-205 (465)
175 KOG3152 TBP-binding protein, a 97.0 0.00069 1.5E-08 59.0 3.5 73 105-177 73-157 (278)
176 PF07292 NID: Nmi/IFP 35 domai 96.9 0.0017 3.7E-08 47.9 4.8 66 63-128 1-74 (88)
177 PF08952 DUF1866: Domain of un 96.9 0.0039 8.4E-08 50.3 6.8 75 104-187 25-108 (146)
178 KOG1996 mRNA splicing factor [ 96.8 0.0041 8.9E-08 55.3 6.8 66 120-185 300-366 (378)
179 PF10309 DUF2414: Protein of u 96.7 0.0094 2E-07 40.8 6.9 56 17-80 4-62 (62)
180 KOG0115 RNA-binding protein p5 96.7 0.0035 7.6E-08 54.7 5.8 60 19-79 32-91 (275)
181 KOG4676 Splicing factor, argin 96.7 0.0025 5.4E-08 58.7 4.7 76 107-183 8-86 (479)
182 KOG2135 Proteins containing th 96.5 0.0017 3.7E-08 61.3 2.9 72 108-186 374-446 (526)
183 KOG2416 Acinus (induces apopto 96.5 0.0025 5.4E-08 61.7 3.7 77 102-184 440-520 (718)
184 PF15023 DUF4523: Protein of u 96.4 0.019 4.2E-07 45.8 7.7 76 102-185 82-161 (166)
185 PF08675 RNA_bind: RNA binding 96.3 0.011 2.5E-07 42.7 5.3 55 107-170 10-64 (87)
186 KOG2591 c-Mpl binding protein, 96.2 0.013 2.7E-07 56.6 6.7 69 16-91 173-247 (684)
187 KOG2416 Acinus (induces apopto 96.2 0.006 1.3E-07 59.2 4.4 77 10-92 436-518 (718)
188 PF07576 BRAP2: BRCA1-associat 96.1 0.063 1.4E-06 41.6 9.2 68 106-175 13-81 (110)
189 KOG3973 Uncharacterized conser 96.1 0.36 7.7E-06 44.3 15.1 8 121-128 243-250 (465)
190 KOG3152 TBP-binding protein, a 96.1 0.0037 8E-08 54.6 2.5 70 17-86 73-156 (278)
191 PF10567 Nab6_mRNP_bdg: RNA-re 96.0 0.22 4.7E-06 44.7 13.0 158 12-170 9-213 (309)
192 PF15023 DUF4523: Protein of u 96.0 0.045 9.7E-07 43.8 7.7 73 15-94 83-160 (166)
193 KOG0112 Large RNA-binding prot 95.7 0.0026 5.6E-08 64.5 -0.0 79 105-184 371-449 (975)
194 PF08952 DUF1866: Domain of un 95.6 0.049 1.1E-06 44.0 6.7 73 16-96 25-107 (146)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.013 2.8E-07 49.6 3.1 83 105-187 6-99 (176)
196 KOG0804 Cytoplasmic Zn-finger 95.4 0.078 1.7E-06 50.1 8.4 68 12-81 68-136 (493)
197 PF07576 BRAP2: BRCA1-associat 95.4 0.16 3.5E-06 39.3 8.9 68 11-80 6-74 (110)
198 KOG2318 Uncharacterized conser 95.3 0.11 2.4E-06 50.7 9.0 127 15-182 171-302 (650)
199 KOG2253 U1 snRNP complex, subu 95.2 0.0025 5.5E-08 62.5 -2.2 77 7-92 29-107 (668)
200 KOG1996 mRNA splicing factor [ 95.2 0.06 1.3E-06 48.1 6.4 63 32-94 300-365 (378)
201 KOG2068 MOT2 transcription fac 95.1 0.0066 1.4E-07 55.2 0.4 83 104-186 75-163 (327)
202 PF03880 DbpA: DbpA RNA bindin 95.1 0.073 1.6E-06 38.1 5.7 59 116-183 11-74 (74)
203 KOG4574 RNA-binding protein (c 94.9 0.021 4.5E-07 57.8 3.0 74 109-188 301-376 (1007)
204 KOG2193 IGF-II mRNA-binding pr 94.8 0.029 6.3E-07 52.4 3.7 76 107-188 2-78 (584)
205 PF04847 Calcipressin: Calcipr 94.4 0.13 2.8E-06 43.7 6.4 62 119-186 8-71 (184)
206 KOG2253 U1 snRNP complex, subu 94.2 0.034 7.4E-07 54.9 2.8 73 102-183 36-108 (668)
207 PF03467 Smg4_UPF3: Smg-4/UPF3 94.0 0.077 1.7E-06 44.9 4.2 66 15-80 4-75 (176)
208 KOG0804 Cytoplasmic Zn-finger 93.9 0.26 5.6E-06 46.8 7.8 69 105-175 73-142 (493)
209 KOG2135 Proteins containing th 93.8 0.061 1.3E-06 51.1 3.6 76 16-97 370-447 (526)
210 KOG4285 Mitotic phosphoprotein 93.8 0.28 6.1E-06 44.1 7.4 72 106-185 197-269 (350)
211 PRK11634 ATP-dependent RNA hel 93.2 1.5 3.3E-05 44.8 12.8 61 115-184 496-561 (629)
212 PF14111 DUF4283: Domain of un 93.1 0.13 2.8E-06 42.1 4.2 116 21-141 18-140 (153)
213 KOG4285 Mitotic phosphoprotein 92.4 0.56 1.2E-05 42.3 7.2 70 18-94 197-268 (350)
214 PF11767 SET_assoc: Histone ly 92.1 0.81 1.8E-05 31.8 6.4 56 116-180 10-65 (66)
215 TIGR02542 B_forsyth_147 Bacter 90.9 0.91 2E-05 34.9 6.0 116 26-159 11-130 (145)
216 KOG4483 Uncharacterized conser 89.7 1.3 2.8E-05 41.5 7.1 56 105-167 390-446 (528)
217 KOG3262 H/ACA small nucleolar 89.5 2.1 4.5E-05 35.8 7.5 27 105-137 79-105 (215)
218 KOG4483 Uncharacterized conser 89.3 1.1 2.4E-05 42.0 6.4 63 11-80 384-447 (528)
219 PF04847 Calcipressin: Calcipr 89.2 1.2 2.6E-05 37.9 6.2 61 30-96 7-71 (184)
220 COG5638 Uncharacterized conser 88.5 2.4 5.2E-05 39.9 8.0 39 15-53 143-186 (622)
221 KOG2068 MOT2 transcription fac 87.7 0.28 6.1E-06 44.9 1.5 109 17-125 76-199 (327)
222 KOG4574 RNA-binding protein (c 87.6 0.35 7.7E-06 49.3 2.2 68 22-95 302-373 (1007)
223 COG5193 LHP1 La protein, small 86.8 0.3 6.6E-06 45.6 1.2 64 15-78 171-244 (438)
224 KOG4213 RNA-binding protein La 86.6 0.74 1.6E-05 38.4 3.2 58 105-167 110-169 (205)
225 PF07530 PRE_C2HC: Associated 85.2 2.3 5E-05 29.8 4.8 63 121-186 2-65 (68)
226 KOG4410 5-formyltetrahydrofola 84.7 4.1 8.9E-05 36.5 7.1 57 107-169 331-395 (396)
227 PF02714 DUF221: Domain of unk 84.6 1.6 3.4E-05 40.7 4.9 56 63-128 1-56 (325)
228 smart00596 PRE_C2HC PRE_C2HC d 83.3 2.6 5.7E-05 29.4 4.2 63 121-186 2-65 (69)
229 PF03880 DbpA: DbpA RNA bindin 82.8 4.8 0.0001 28.5 5.7 57 28-93 11-74 (74)
230 PF11767 SET_assoc: Histone ly 80.4 8.2 0.00018 26.9 5.9 42 29-79 11-52 (66)
231 KOG2891 Surface glycoprotein [ 79.2 6.6 0.00014 35.1 6.4 36 105-140 148-195 (445)
232 COG5594 Uncharacterized integr 78.5 0.5 1.1E-05 48.4 -0.8 38 14-51 204-244 (827)
233 COG2242 CobL Precorrin-6B meth 77.5 44 0.00095 28.5 11.5 145 21-187 8-166 (187)
234 KOG4410 5-formyltetrahydrofola 76.9 6.1 0.00013 35.5 5.5 50 17-71 329-378 (396)
235 KOG4213 RNA-binding protein La 76.0 3.5 7.5E-05 34.5 3.5 57 18-78 111-168 (205)
236 PF07530 PRE_C2HC: Associated 75.9 6.6 0.00014 27.5 4.5 63 33-96 2-65 (68)
237 COG2061 ACT-domain-containing 75.4 44 0.00095 27.4 12.0 130 39-176 26-159 (170)
238 PF03468 XS: XS domain; Inter 74.8 3.7 8.1E-05 32.1 3.3 49 20-71 10-67 (116)
239 PRK11901 hypothetical protein; 74.6 5.7 0.00012 36.6 4.9 53 117-171 253-307 (327)
240 smart00596 PRE_C2HC PRE_C2HC d 74.3 6.6 0.00014 27.4 4.0 63 33-96 2-65 (69)
241 KOG3262 H/ACA small nucleolar 74.1 53 0.0011 27.7 10.6 18 150-167 80-97 (215)
242 KOG4019 Calcineurin-mediated s 73.3 2.7 5.9E-05 35.2 2.3 74 107-186 11-90 (193)
243 PRK10629 EnvZ/OmpR regulon mod 72.6 25 0.00053 28.0 7.5 59 118-184 50-109 (127)
244 PF03468 XS: XS domain; Inter 72.0 10 0.00022 29.6 5.1 37 118-157 29-65 (116)
245 KOG2295 C2H2 Zn-finger protein 71.8 0.61 1.3E-05 45.4 -2.1 63 16-78 229-291 (648)
246 KOG4008 rRNA processing protei 71.5 2.5 5.4E-05 36.9 1.7 35 103-137 37-71 (261)
247 KOG2295 C2H2 Zn-finger protein 71.2 0.57 1.2E-05 45.6 -2.4 71 105-175 230-300 (648)
248 PF10567 Nab6_mRNP_bdg: RNA-re 68.8 7.6 0.00017 35.1 4.2 81 104-184 13-106 (309)
249 CHL00123 rps6 ribosomal protei 67.3 30 0.00064 26.0 6.7 67 20-88 10-90 (97)
250 PF00403 HMA: Heavy-metal-asso 64.2 30 0.00065 23.0 5.8 54 108-167 1-58 (62)
251 PF15513 DUF4651: Domain of un 62.9 18 0.0004 24.7 4.2 21 32-52 8-28 (62)
252 PF07292 NID: Nmi/IFP 35 domai 62.6 8.9 0.00019 28.3 2.9 32 151-182 1-33 (88)
253 PF09869 DUF2096: Uncharacteri 62.5 25 0.00055 29.1 5.8 51 108-169 114-164 (169)
254 PRK10905 cell division protein 62.4 14 0.0003 34.0 4.6 54 116-171 254-309 (328)
255 PRK09631 DNA topoisomerase IV 61.7 36 0.00077 34.8 7.9 60 18-80 220-282 (635)
256 COG1801 Uncharacterized conser 60.5 33 0.00072 31.0 6.8 17 114-130 197-213 (263)
257 KOG4365 Uncharacterized conser 60.2 1.4 3E-05 41.8 -2.0 78 107-185 4-81 (572)
258 PF02714 DUF221: Domain of unk 60.1 9.5 0.00021 35.4 3.4 35 151-187 1-35 (325)
259 cd00187 TOP4c DNA Topoisomeras 58.9 29 0.00063 33.9 6.6 59 18-78 225-287 (445)
260 PF04278 Tic22: Tic22-like fam 58.3 45 0.00097 30.3 7.3 140 29-172 62-225 (274)
261 PRK14548 50S ribosomal protein 58.1 22 0.00047 26.1 4.3 52 113-167 27-80 (84)
262 TIGR03636 L23_arch archaeal ri 56.9 27 0.00058 25.1 4.5 56 109-167 16-73 (77)
263 PF14026 DUF4242: Protein of u 56.6 71 0.0015 22.8 7.6 57 109-167 3-66 (77)
264 KOG4008 rRNA processing protei 56.5 9.5 0.0002 33.4 2.5 36 13-48 35-70 (261)
265 KOG4019 Calcineurin-mediated s 55.6 14 0.0003 31.1 3.2 73 17-95 9-89 (193)
266 PRK11901 hypothetical protein; 55.2 51 0.0011 30.5 7.1 54 26-81 250-305 (327)
267 COG3254 Uncharacterized conser 55.1 40 0.00086 25.7 5.3 46 119-167 25-70 (105)
268 PF10915 DUF2709: Protein of u 54.0 63 0.0014 27.4 6.8 74 43-131 35-117 (238)
269 KOG4357 Uncharacterized conser 53.5 14 0.00031 28.8 2.8 42 125-174 98-139 (164)
270 COG0837 Glk Glucokinase [Carbo 53.1 32 0.00069 31.6 5.4 70 60-141 34-104 (320)
271 KOG1295 Nonsense-mediated deca 51.2 20 0.00043 33.8 3.9 69 105-173 6-77 (376)
272 PF00403 HMA: Heavy-metal-asso 51.1 66 0.0014 21.3 5.7 53 20-78 1-57 (62)
273 COG5193 LHP1 La protein, small 50.8 7.4 0.00016 36.8 1.0 61 106-166 174-244 (438)
274 smart00434 TOP4c DNA Topoisome 50.5 37 0.00081 33.2 5.9 59 19-78 233-295 (445)
275 KOG1635 Peptide methionine sul 50.5 25 0.00054 29.4 3.9 60 16-78 73-133 (191)
276 TIGR00995 3a0901s06TIC22 chlor 49.8 73 0.0016 28.8 7.1 132 29-172 69-218 (270)
277 PF15513 DUF4651: Domain of un 49.1 39 0.00085 23.1 4.0 21 120-140 8-28 (62)
278 COG0030 KsgA Dimethyladenosine 48.8 80 0.0017 28.5 7.2 35 18-52 95-129 (259)
279 PF08002 DUF1697: Protein of u 47.8 1.4E+02 0.0031 23.9 8.0 114 19-139 4-132 (137)
280 PF14893 PNMA: PNMA 46.4 19 0.00041 33.7 2.9 25 105-129 17-41 (331)
281 PF00521 DNA_topoisoIV: DNA gy 45.8 40 0.00087 32.8 5.3 58 19-80 217-278 (426)
282 KOG1295 Nonsense-mediated deca 45.3 23 0.00049 33.4 3.3 63 16-78 5-70 (376)
283 PF14026 DUF4242: Protein of u 43.8 1.2E+02 0.0025 21.7 6.1 57 21-79 3-66 (77)
284 PF14893 PNMA: PNMA 43.5 21 0.00047 33.3 2.9 55 16-72 16-74 (331)
285 PRK01178 rps24e 30S ribosomal 42.7 72 0.0016 24.1 5.1 47 28-75 29-80 (99)
286 PRK11230 glycolate oxidase sub 41.9 1.9E+02 0.004 28.9 9.4 48 32-80 203-254 (499)
287 TIGR00119 acolac_sm acetolacta 41.4 1.3E+02 0.0028 24.9 6.9 90 31-135 55-145 (157)
288 TIGR03636 L23_arch archaeal ri 41.1 78 0.0017 22.7 4.8 55 21-78 16-72 (77)
289 KOG2854 Possible pfkB family c 40.9 64 0.0014 30.0 5.4 40 17-56 80-119 (343)
290 PTZ00338 dimethyladenosine tra 40.4 1.2E+02 0.0025 27.9 7.2 26 20-45 103-128 (294)
291 CHL00100 ilvH acetohydroxyacid 40.3 70 0.0015 26.9 5.2 89 32-135 57-146 (174)
292 TIGR01061 parC_Gpos DNA topois 39.9 88 0.0019 32.8 7.0 59 18-78 248-310 (738)
293 PRK05560 DNA gyrase subunit A; 39.7 74 0.0016 33.8 6.5 59 18-78 251-313 (805)
294 PRK09630 DNA topoisomerase IV 38.8 54 0.0012 32.0 4.8 60 18-80 220-282 (479)
295 cd06405 PB1_Mekk2_3 The PB1 do 38.5 1.5E+02 0.0032 21.2 7.3 60 113-181 15-75 (79)
296 cd00874 RNA_Cyclase_Class_II R 38.2 2.3E+02 0.0049 26.5 8.8 117 19-155 110-237 (326)
297 PF03439 Spt5-NGN: Early trans 38.1 41 0.00089 24.4 3.1 33 44-81 33-65 (84)
298 TIGR01063 gyrA DNA gyrase, A s 38.1 79 0.0017 33.5 6.4 59 18-78 248-310 (800)
299 PRK14548 50S ribosomal protein 37.9 85 0.0018 22.9 4.7 55 22-79 24-80 (84)
300 KOG2891 Surface glycoprotein [ 37.2 43 0.00093 30.1 3.6 37 16-52 147-195 (445)
301 PRK12758 DNA topoisomerase IV 36.5 84 0.0018 33.3 6.1 60 17-80 240-303 (869)
302 COG0018 ArgS Arginyl-tRNA synt 36.1 2.8E+02 0.0062 28.2 9.7 96 31-141 59-165 (577)
303 KOG4354 N-acetyl-gamma-glutamy 36.0 2.5E+02 0.0053 25.2 8.0 64 107-170 87-152 (340)
304 TIGR01124 ilvA_2Cterm threonin 35.8 1.3E+02 0.0029 29.9 7.2 50 107-158 419-468 (499)
305 PF12829 Mhr1: Transcriptional 35.4 66 0.0014 23.9 3.8 56 111-170 17-73 (91)
306 KOG1175 Acyl-CoA synthetase [L 35.0 38 0.00083 34.5 3.3 91 29-130 507-599 (626)
307 PF13575 DUF4135: Domain of un 35.0 75 0.0016 30.1 5.3 101 31-134 29-144 (370)
308 KOG3424 40S ribosomal protein 34.9 1.2E+02 0.0026 23.6 5.2 47 28-75 33-84 (132)
309 TIGR02515 IV_pilus_PilQ type I 34.9 68 0.0015 31.1 5.0 59 32-93 10-74 (418)
310 smart00833 CobW_C Cobalamin sy 34.9 59 0.0013 23.5 3.7 23 105-130 69-91 (92)
311 COG0030 KsgA Dimethyladenosine 34.5 1.2E+02 0.0025 27.4 6.0 28 106-133 95-122 (259)
312 KOG4365 Uncharacterized conser 34.1 7.5 0.00016 37.1 -1.6 52 19-70 4-55 (572)
313 PRK00274 ksgA 16S ribosomal RN 33.9 1.7E+02 0.0037 26.4 7.2 23 19-41 106-128 (272)
314 COG4009 Uncharacterized protei 33.7 74 0.0016 22.9 3.6 23 109-131 51-73 (88)
315 KOG2187 tRNA uracil-5-methyltr 33.6 34 0.00075 33.7 2.6 73 109-186 28-101 (534)
316 PHA00019 IV phage assembly pro 33.4 1.6E+02 0.0035 28.6 7.4 26 29-54 27-52 (428)
317 COG5337 CotH Spore coat assemb 33.2 67 0.0015 30.1 4.3 99 65-166 99-200 (473)
318 KOG4000 Uncharacterized conser 32.9 1.7E+02 0.0036 26.0 6.3 39 39-78 11-51 (291)
319 PF08734 GYD: GYD domain; Int 32.6 1.6E+02 0.0035 21.7 5.6 47 119-169 21-68 (91)
320 PF09869 DUF2096: Uncharacteri 32.4 1.6E+02 0.0035 24.5 5.9 60 11-81 105-164 (169)
321 PLN02690 Agmatine deiminase 32.4 2.4E+02 0.0052 26.9 8.1 27 26-52 185-211 (374)
322 COG2608 CopZ Copper chaperone 32.4 1.4E+02 0.0031 20.7 5.0 46 19-70 4-49 (71)
323 smart00666 PB1 PB1 domain. Pho 31.8 1.8E+02 0.004 20.4 6.5 56 21-81 12-69 (81)
324 PTZ00191 60S ribosomal protein 31.7 1E+02 0.0023 25.0 4.7 53 109-164 84-138 (145)
325 PRK05561 DNA topoisomerase IV 30.8 1.4E+02 0.003 31.4 6.7 37 18-54 258-297 (742)
326 PHA01632 hypothetical protein 30.4 47 0.001 22.0 2.1 21 21-41 19-39 (64)
327 KOG0023 Alcohol dehydrogenase, 30.4 2.5E+02 0.0055 26.3 7.5 31 153-184 326-356 (360)
328 COG4010 Uncharacterized protei 30.3 2.2E+02 0.0047 23.1 6.1 46 25-80 118-163 (170)
329 PRK08559 nusG transcription an 30.1 91 0.002 25.5 4.3 31 45-80 36-66 (153)
330 PF11823 DUF3343: Protein of u 30.1 55 0.0012 22.9 2.6 25 150-174 3-27 (73)
331 smart00666 PB1 PB1 domain. Pho 30.0 2E+02 0.0043 20.2 5.8 56 109-169 12-69 (81)
332 COG2608 CopZ Copper chaperone 29.9 1.5E+02 0.0031 20.7 4.8 56 106-167 3-62 (71)
333 KOG2603 Oligosaccharyltransfer 29.9 1.3E+02 0.0029 27.8 5.5 111 21-141 65-176 (331)
334 KOG1131 RNA polymerase II tran 29.9 51 0.0011 32.8 3.1 103 62-179 564-677 (755)
335 PF07876 Dabb: Stress responsi 29.6 2.2E+02 0.0047 20.6 6.1 56 23-78 6-72 (97)
336 PF10105 DUF2344: Uncharacteri 29.6 1.6E+02 0.0035 25.0 5.8 81 62-143 63-145 (187)
337 PF11411 DNA_ligase_IV: DNA li 29.6 41 0.00089 20.3 1.5 17 27-43 18-34 (36)
338 PHA02592 52 DNA topisomerase I 29.4 95 0.0021 30.3 4.9 25 18-42 227-251 (439)
339 KOG3432 Vacuolar H+-ATPase V1 29.4 87 0.0019 24.0 3.6 26 27-52 42-67 (121)
340 KOG1232 Proteins containing th 29.1 82 0.0018 30.0 4.2 54 24-78 230-287 (511)
341 KOG1177 Long chain fatty acid 28.9 1.3E+02 0.0029 29.7 5.6 84 28-129 492-587 (596)
342 KOG0256 1-aminocyclopropane-1- 28.8 1.4E+02 0.0031 28.8 5.7 67 114-188 239-305 (471)
343 PHA02550 32 single-stranded DN 28.7 4.3E+02 0.0094 24.2 8.4 127 28-172 101-244 (304)
344 KOG3702 Nuclear polyadenylated 28.6 67 0.0015 32.6 3.7 63 16-78 509-571 (681)
345 PRK11895 ilvH acetolactate syn 28.5 2.8E+02 0.0061 23.0 6.9 90 33-137 58-148 (161)
346 PTZ00108 DNA topoisomerase 2-l 28.4 2.1E+02 0.0045 32.4 7.7 24 18-41 885-908 (1388)
347 COG5353 Uncharacterized protei 28.4 2.9E+02 0.0062 22.6 6.6 58 17-74 86-156 (161)
348 PF04026 SpoVG: SpoVG; InterP 28.3 1.1E+02 0.0024 22.3 4.0 26 132-157 2-27 (84)
349 PF14111 DUF4283: Domain of un 28.3 20 0.00043 29.0 0.1 36 150-186 57-92 (153)
350 KOG2854 Possible pfkB family c 28.2 76 0.0016 29.5 3.8 63 17-79 159-231 (343)
351 PRK01060 endonuclease IV; Prov 28.2 1.4E+02 0.0031 26.7 5.7 37 18-54 139-180 (281)
352 smart00650 rADc Ribosomal RNA 28.1 2.2E+02 0.0049 23.2 6.5 23 107-129 78-100 (169)
353 COG3938 Proline racemase [Amin 28.0 3.3E+02 0.0071 25.2 7.6 32 103-134 134-165 (341)
354 PF12623 Hen1_L: RNA repair, l 27.9 1.3E+02 0.0027 26.6 4.8 62 106-168 118-183 (245)
355 COG0079 HisC Histidinol-phosph 27.8 80 0.0017 29.9 4.1 43 105-157 145-191 (356)
356 PRK09224 threonine dehydratase 27.8 4.1E+02 0.009 26.4 9.3 50 107-158 423-472 (504)
357 PRK06737 acetolactate synthase 27.7 2.3E+02 0.005 20.2 6.0 61 108-171 6-67 (76)
358 PF03439 Spt5-NGN: Early trans 27.5 1.1E+02 0.0024 22.2 3.9 26 147-172 43-68 (84)
359 PF08156 NOP5NT: NOP5NT (NUC12 27.5 19 0.00041 25.1 -0.2 38 121-168 27-64 (67)
360 PF03337 Pox_F12L: Poxvirus F1 27.4 2.4E+02 0.0052 28.9 7.4 81 22-115 2-86 (651)
361 PF13721 SecD-TM1: SecD export 27.3 2.7E+02 0.0059 21.0 6.7 44 121-172 49-93 (101)
362 PRK11230 glycolate oxidase sub 27.1 2E+02 0.0044 28.6 6.9 50 120-170 203-256 (499)
363 PF09902 DUF2129: Uncharacteri 27.1 1.3E+02 0.0028 21.2 4.0 40 125-173 15-54 (71)
364 PF10281 Ish1: Putative stress 27.0 53 0.0012 19.8 1.8 18 29-46 3-20 (38)
365 PF02426 MIase: Muconolactone 26.9 2.7E+02 0.0058 20.7 8.8 66 25-94 10-85 (91)
366 PF03108 DBD_Tnp_Mut: MuDR fam 26.4 71 0.0015 21.8 2.7 30 65-94 8-37 (67)
367 PF09848 DUF2075: Uncharacteri 26.4 4E+02 0.0086 24.9 8.6 63 59-121 192-260 (352)
368 TIGR00755 ksgA dimethyladenosi 26.1 2.4E+02 0.0052 24.9 6.7 23 108-130 96-118 (253)
369 COG4010 Uncharacterized protei 26.1 1.6E+02 0.0035 23.9 4.7 46 113-168 118-163 (170)
370 PF13820 Nucleic_acid_bd: Puta 26.0 1.3E+02 0.0028 24.6 4.4 57 19-79 5-64 (149)
371 KOG2318 Uncharacterized conser 26.0 92 0.002 31.2 4.1 39 103-141 171-214 (650)
372 PF15407 Spo7_2_N: Sporulation 25.9 21 0.00045 24.9 -0.2 27 16-42 25-51 (67)
373 PRK10905 cell division protein 25.9 1.4E+02 0.0031 27.6 5.0 58 22-81 248-307 (328)
374 PF09707 Cas_Cas2CT1978: CRISP 25.9 1.2E+02 0.0027 22.2 3.9 48 18-68 25-72 (86)
375 KOG0735 AAA+-type ATPase [Post 25.8 2.2E+02 0.0047 29.9 6.7 155 23-182 629-810 (952)
376 PF00398 RrnaAD: Ribosomal RNA 25.7 1.9E+02 0.0041 25.8 6.0 60 68-128 59-119 (262)
377 PTZ00338 dimethyladenosine tra 25.5 1.2E+02 0.0026 27.9 4.7 22 108-129 103-124 (294)
378 PRK00110 hypothetical protein; 25.3 1.3E+02 0.0029 26.8 4.8 42 20-68 96-143 (245)
379 PRK06369 nac nascent polypepti 24.8 3.1E+02 0.0068 21.3 6.1 31 116-170 73-103 (115)
380 PRK00274 ksgA 16S ribosomal RN 24.4 1.5E+02 0.0033 26.7 5.1 23 107-129 106-128 (272)
381 PRK09756 PTS system N-acetylga 24.3 4E+02 0.0088 21.9 7.8 67 62-140 81-149 (158)
382 PF05336 DUF718: Domain of unk 24.1 1.8E+02 0.0039 22.1 4.7 44 120-166 25-68 (106)
383 COG0351 ThiD Hydroxymethylpyri 24.1 1.4E+02 0.003 27.0 4.6 24 20-43 49-72 (263)
384 COG2004 RPS24A Ribosomal prote 24.1 3.4E+02 0.0073 20.9 6.3 47 27-74 29-80 (107)
385 COG2177 FtsX Cell division pro 24.0 3.2E+02 0.0069 25.2 7.1 49 14-79 56-104 (297)
386 COG0225 MsrA Peptide methionin 23.8 1.4E+02 0.0031 25.0 4.3 27 15-41 54-80 (174)
387 COG3643 Glutamate formiminotra 23.8 1.9E+02 0.004 25.8 5.1 59 22-80 7-65 (302)
388 COG5584 Predicted small secret 23.5 87 0.0019 23.5 2.6 30 25-54 29-58 (103)
389 PF14350 Beta_protein: Beta pr 23.5 1.8E+02 0.0039 27.2 5.6 40 117-164 136-176 (347)
390 KOG1134 Uncharacterized conser 23.4 1.4E+02 0.0029 31.4 5.0 58 58-125 303-360 (728)
391 PF00585 Thr_dehydrat_C: C-ter 23.4 1.6E+02 0.0035 21.7 4.2 51 121-171 22-74 (91)
392 PF13046 DUF3906: Protein of u 23.2 1E+02 0.0022 21.2 2.7 34 30-65 30-63 (64)
393 TIGR03399 RNA_3prim_cycl RNA 3 23.2 6.2E+02 0.013 23.6 10.3 117 19-155 112-239 (326)
394 COG1393 ArsC Arsenate reductas 23.1 36 0.00079 26.6 0.7 64 26-91 34-98 (117)
395 COG5470 Uncharacterized conser 23.0 1.8E+02 0.0038 21.8 4.2 42 123-166 25-71 (96)
396 PRK05772 translation initiatio 23.0 2.4E+02 0.0051 26.9 6.2 51 30-81 3-57 (363)
397 PRK11611 enhanced serine sensi 22.9 3.7E+02 0.008 24.1 7.0 80 106-185 129-214 (246)
398 PTZ00136 eukaryotic translatio 22.7 3.9E+02 0.0084 23.9 7.1 54 26-79 72-131 (247)
399 COG0002 ArgC Acetylglutamate s 22.7 1E+02 0.0022 28.9 3.6 26 115-140 254-280 (349)
400 COG1163 DRG Predicted GTPase [ 22.6 6.6E+02 0.014 23.7 10.5 38 29-79 198-235 (365)
401 PF08544 GHMP_kinases_C: GHMP 22.3 2.8E+02 0.0061 19.3 5.4 42 33-79 37-78 (85)
402 PRK13259 regulatory protein Sp 22.3 1.6E+02 0.0034 22.1 3.8 26 132-157 2-27 (94)
403 PF03254 XG_FTase: Xyloglucan 22.1 2.8E+02 0.0062 27.3 6.6 74 100-180 348-423 (476)
404 KOG0237 Glycinamide ribonucleo 22.1 67 0.0014 32.4 2.4 76 30-115 708-783 (788)
405 cd01201 Neurobeachin Neurobeac 21.7 3.8E+02 0.0082 20.6 7.2 53 21-80 49-105 (108)
406 PRK02302 hypothetical protein; 21.5 1.9E+02 0.0041 21.4 4.1 40 125-173 21-60 (89)
407 PLN02696 1-deoxy-D-xylulose-5- 21.4 1.3E+02 0.0029 29.4 4.2 62 26-94 203-270 (454)
408 PF04026 SpoVG: SpoVG; InterP 21.1 1.8E+02 0.004 21.2 4.0 26 44-69 2-27 (84)
409 PF11532 HnRNP_M: Heterogeneou 21.0 38 0.00082 19.2 0.3 10 338-347 16-25 (30)
410 COG0079 HisC Histidinol-phosph 21.0 1.3E+02 0.0028 28.4 4.1 49 17-76 145-197 (356)
411 PRK02886 hypothetical protein; 20.9 2E+02 0.0043 21.2 4.1 40 125-173 19-58 (87)
412 PF10574 UPF0552: Uncharacteri 20.9 5.7E+02 0.012 22.4 7.4 104 15-128 9-121 (224)
413 KOG2014 SMT3/SUMO-activating c 20.8 1.7E+02 0.0037 27.0 4.5 58 113-171 242-306 (331)
414 PF01282 Ribosomal_S24e: Ribos 20.7 3.4E+02 0.0074 19.7 5.8 47 28-75 11-62 (84)
415 PF00398 RrnaAD: Ribosomal RNA 20.4 99 0.0021 27.7 3.0 24 17-40 96-119 (262)
416 PF13607 Succ_CoA_lig: Succiny 20.2 4.6E+02 0.0099 21.0 9.2 94 18-133 29-123 (138)
417 COG3254 Uncharacterized conser 20.2 4E+02 0.0088 20.3 5.7 43 33-78 27-69 (105)
418 PF15063 TC1: Thyroid cancer p 20.1 12 0.00026 26.6 -2.3 30 105-134 24-53 (79)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.3e-37 Score=284.87 Aligned_cols=172 Identities=26% Similarity=0.502 Sum_probs=157.1
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
.+..+.++|||++||+++|+++|+++|++|++|++|+|+++..++++++||||+|+++++|++||++++ .|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 455678999999999999999999999999999999999999999999999999999999999998655 889999999
Q ss_pred eecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
.++.+... ....++|||.|||+++||++|+++|++||+|+.|+|+.++.++++++||||+|++.++|++||++||+
T Consensus 182 ~~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 98765432 23567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC--eEEEEEeCCCCCC
Q 018875 171 IDMAG--TQVEIKKAEPKKS 188 (349)
Q Consensus 171 ~~~~g--~~i~v~~a~~~~~ 188 (349)
+.|.+ ++|+|.+++....
T Consensus 258 ~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CccCCCceeEEEEECCcccc
Confidence 98876 6899999887643
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=2.7e-31 Score=259.12 Aligned_cols=174 Identities=21% Similarity=0.467 Sum_probs=155.5
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
....++|||+|||+++++++|+++|++||+|++|.|+.++.+++++|||||+|.++++|++||+.++ .|.++.|.|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3467899999999999999999999999999999999999999999999999999999999998654 88999999986
Q ss_pred cCCCCCCC-------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHH
Q 018875 93 TIPKGSGQ-------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165 (349)
Q Consensus 93 ~~~~~~~~-------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai 165 (349)
........ ......++|||.|||+++++++|+++|++||.|++|+|+++..+++++|||||+|++.++|++||
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 54322111 11224578999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccCCeEEEEEeCCCCCC
Q 018875 166 SKGNMIDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 166 ~~l~~~~~~g~~i~v~~a~~~~~ 188 (349)
+.||..+|.++.|+|.++.+...
T Consensus 264 ~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 264 ASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HHhCCCeeCCeEEEEEecCCCcc
Confidence 99999999999999999886543
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=8.5e-30 Score=248.30 Aligned_cols=165 Identities=24% Similarity=0.457 Sum_probs=135.8
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--cc-CCcEEEEe
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--II-NGKQVEIK 91 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~-~g~~i~v~ 91 (349)
+...++|||+|||++++|++|+++|++||+|.+|+|++| .++++++||||+|.++++|++||+.++ .| .++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445689999999999999999999999999999999999 699999999999999999999999654 23 23332221
Q ss_pred ecC-----------------------------------------------------------------------------
Q 018875 92 RTI----------------------------------------------------------------------------- 94 (349)
Q Consensus 92 ~~~----------------------------------------------------------------------------- 94 (349)
++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 110
Q ss_pred -------CCCCCCC-CCCCCCeEEEcCCCCCCCHHHHHHHhhcc--CceEEEEEEecCCCCCcccEEEEEecCHHHHHHH
Q 018875 95 -------PKGSGQS-KDFKTKKIFVGGIPSSVSEDELKNFFSKY--GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164 (349)
Q Consensus 95 -------~~~~~~~-~~~~~~~l~V~nL~~~~t~e~l~~~F~~~--G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~A 164 (349)
+...... .....++|||.||++++|+|+|+++|++| |+|++|.++++ ||||+|++.++|++|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg--------fAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD--------YAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC--------eEEEEeCCHHHHHHH
Confidence 0000000 00124679999999999999999999999 99999988765 999999999999999
Q ss_pred HHhCCCcccCCeEEEEEeCCCCCC
Q 018875 165 LSKGNMIDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 165 i~~l~~~~~~g~~i~v~~a~~~~~ 188 (349)
|++||+.+|+++.|+|++++++..
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCc
Confidence 999999999999999999987654
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.6e-30 Score=245.40 Aligned_cols=167 Identities=25% Similarity=0.544 Sum_probs=152.5
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTI 94 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~ 94 (349)
+.++|||+|||.++|+++|+++|++||+|.+|+|++++.+++++|||||+|.++++|++||+.++ .+.++.|.|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999899999999999999999999998655 8999999999887
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC
Q 018875 95 PKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (349)
Q Consensus 95 ~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~ 174 (349)
+... .....+|||.|||.++++++|+++|++||.|..+.|+.+..++.+++||||+|++.++|++||+.||+..+.
T Consensus 82 ~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred cccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 6433 235678999999999999999999999999999999999888899999999999999999999999999887
Q ss_pred C--eEEEEEeCCCCC
Q 018875 175 G--TQVEIKKAEPKK 187 (349)
Q Consensus 175 g--~~i~v~~a~~~~ 187 (349)
+ .+|.|.++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 578888887554
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=3.2e-30 Score=251.72 Aligned_cols=174 Identities=24% Similarity=0.442 Sum_probs=155.4
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEe
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIK 91 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~ 91 (349)
..+.+.++|||.|||.++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+ +...+.+++|.|+
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQ 163 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEe
Confidence 345568899999999999999999999999999999999999899999999999999999999998 4458899999998
Q ss_pred ecCCCCCCC--------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHH
Q 018875 92 RTIPKGSGQ--------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE 163 (349)
Q Consensus 92 ~~~~~~~~~--------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~ 163 (349)
.+....... ......++|||.|||.++|+++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 765432211 111236899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcccCCeEEEEEeCCCC
Q 018875 164 MLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 164 Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
||+.|++..|.+++|+|.++...
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccCC
Confidence 99999999999999999998743
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.7e-30 Score=222.12 Aligned_cols=173 Identities=20% Similarity=0.472 Sum_probs=156.0
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
+.+......|||+.|..+++.|+|++.|.+||+|.+++|++|.+|.++|||+||.|.+.++|+.||+.++ +|..|.|+
T Consensus 56 k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 3344456789999999999999999999999999999999999999999999999999999999999665 89999999
Q ss_pred EeecCCCCCCC------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC
Q 018875 90 IKRTIPKGSGQ------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS 157 (349)
Q Consensus 90 v~~~~~~~~~~------------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~ 157 (349)
..|++.+.... ....+.++|||+||+..+||++|++.|++||+|.+|+|.++ ++||||.|++
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~t 209 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFET 209 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecc
Confidence 99998776432 13447789999999999999999999999999999999998 5699999999
Q ss_pred HHHHHHHHHhCCCcccCCeEEEEEeCCCCCCCC
Q 018875 158 EEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 190 (349)
Q Consensus 158 ~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~~~~ 190 (349)
+|+|.+||.++|+.+|.++.|++.|-+......
T Consensus 210 kEaAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 210 KEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred hhhHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 999999999999999999999999998765443
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.4e-29 Score=239.10 Aligned_cols=173 Identities=25% Similarity=0.415 Sum_probs=149.4
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCC--cEEEEe
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IING--KQVEIK 91 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g--~~i~v~ 91 (349)
...++|||.|||.++++++|+++|++||+|..+.|+.+..++.+++||||+|++.++|++||+.++ .+.+ .+|.|.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 356789999999999999999999999999999999998788999999999999999999998655 4444 567777
Q ss_pred ecCCCCCCCC----------------------------------------------------------------------
Q 018875 92 RTIPKGSGQS---------------------------------------------------------------------- 101 (349)
Q Consensus 92 ~~~~~~~~~~---------------------------------------------------------------------- 101 (349)
++........
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 6543321000
Q ss_pred ------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHH
Q 018875 102 ------------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE 163 (349)
Q Consensus 102 ------------------~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~ 163 (349)
......+|||.|||+++++++|+++|++||.|++|+|+.+..+++++|||||+|++.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 00112259999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcccCCeEEEEEeCCCCCC
Q 018875 164 MLSKGNMIDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 164 Ai~~l~~~~~~g~~i~v~~a~~~~~ 188 (349)
||++||+..|.++.|+|+++..+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999988753
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.5e-30 Score=233.16 Aligned_cols=168 Identities=21% Similarity=0.411 Sum_probs=150.0
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCC-eeEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHHccC----ccCCcEE
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGD-ITDSVIMKDRY-TGQPRGFGFITYADPSVVDKVIEDTH----IINGKQV 88 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~-i~~~~i~~~~~-~g~~kG~afVef~~~~~a~~al~~~~----~~~g~~i 88 (349)
+...|+|||+|||+++++++|++.|++..+ |++|+|..+.. +.+++|||||+|.+...|..|..++. .+.+..+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 456889999999999999999999999987 77888777653 56899999999999999998887543 7889999
Q ss_pred EEeecCCCCCCCCCC-CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh
Q 018875 89 EIKRTIPKGSGQSKD-FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 89 ~v~~~~~~~~~~~~~-~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
.|.|+.+..+..... .+.+.|||.||+.++|+|.|+++|++||.|++|+.++| ||||+|.+.++|.+||+.
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 999999887765543 35678999999999999999999999999999999988 999999999999999999
Q ss_pred CCCcccCCeEEEEEeCCCCCCCC
Q 018875 168 GNMIDMAGTQVEIKKAEPKKSSN 190 (349)
Q Consensus 168 l~~~~~~g~~i~v~~a~~~~~~~ 190 (349)
+|.++|++..|+|.+|+|..+..
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred hcCceecCceEEEEecCChhhhc
Confidence 99999999999999999876544
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=6.3e-30 Score=231.20 Aligned_cols=173 Identities=27% Similarity=0.515 Sum_probs=152.9
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC---ccCC--cEE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH---IING--KQV 88 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~---~~~g--~~i 88 (349)
.+.+.-+|||+.||..|+|.||+++|++|+.|.+|.|++|+.++.++|+|||.|.+.++|.+|+..+| .+.+ .+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 34677789999999999999999999999999999999999999999999999999999999998665 4444 577
Q ss_pred EEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhC
Q 018875 89 EIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (349)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 168 (349)
.|+.+..+.+.. ..+.+|||+-|+..+||++|+++|++||.|++|.|+++ ..+.+||||||+|.+.|.|..||+.|
T Consensus 110 qvk~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 110 QVKYADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred eecccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhh
Confidence 888777654443 46789999999999999999999999999999999999 67899999999999999999999999
Q ss_pred CCcc-cC--CeEEEEEeCCCCCCCC
Q 018875 169 NMID-MA--GTQVEIKKAEPKKSSN 190 (349)
Q Consensus 169 ~~~~-~~--g~~i~v~~a~~~~~~~ 190 (349)
|+.. +. ..+|.|+||.+++.+.
T Consensus 186 ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ccceeeccCCCceEEEecccCCCch
Confidence 9765 44 4689999999987653
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.8e-28 Score=245.04 Aligned_cols=164 Identities=26% Similarity=0.497 Sum_probs=148.0
Q ss_pred eEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecCCCC
Q 018875 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKG 97 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~~~~ 97 (349)
+|||+|||.++||++|+++|++||+|++|+|+++..+++++|||||+|.++++|++||+.++ .|.++.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999899999999999999999999998654 6899999999875432
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeE
Q 018875 98 SGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177 (349)
Q Consensus 98 ~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~ 177 (349)
. .......+|||+|||.++++++|+++|++||.|..|.|+.+ .++++++||||+|++.++|++||++||+..+.++.
T Consensus 82 ~--~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~ 158 (562)
T TIGR01628 82 S--LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKE 158 (562)
T ss_pred c--ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCce
Confidence 2 22234568999999999999999999999999999999988 56789999999999999999999999999999999
Q ss_pred EEEEeCCCC
Q 018875 178 VEIKKAEPK 186 (349)
Q Consensus 178 i~v~~a~~~ 186 (349)
|.|....++
T Consensus 159 i~v~~~~~~ 167 (562)
T TIGR01628 159 VYVGRFIKK 167 (562)
T ss_pred EEEeccccc
Confidence 999765544
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.3e-27 Score=238.83 Aligned_cols=173 Identities=23% Similarity=0.479 Sum_probs=153.3
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccC----CcE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IIN----GKQ 87 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~----g~~ 87 (349)
.....++|||.|||.++|+++|+++|++||+|+++.|+.+. ++++++||||+|++.++|++|++.++ .+. ++.
T Consensus 174 ~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~ 252 (562)
T TIGR01628 174 PLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKK 252 (562)
T ss_pred cccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEeccccccee
Confidence 34556789999999999999999999999999999999986 78899999999999999999998654 666 888
Q ss_pred EEEeecCCCCCCC--------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEE
Q 018875 88 VEIKRTIPKGSGQ--------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFV 153 (349)
Q Consensus 88 i~v~~~~~~~~~~--------------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV 153 (349)
|.|.++..+.+.. .......+|||.||++++|+++|+++|++||.|++|+|+.+ .++++++||||
T Consensus 253 l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV 331 (562)
T TIGR01628 253 LYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFV 331 (562)
T ss_pred eEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEE
Confidence 8888776554331 11335678999999999999999999999999999999999 78999999999
Q ss_pred EecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCCC
Q 018875 154 IFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 154 ~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~~ 188 (349)
+|.+.++|++||+.||+..|.+++|.|.++..+..
T Consensus 332 ~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 332 CFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred EeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 99999999999999999999999999999987653
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=9.9e-27 Score=230.12 Aligned_cols=169 Identities=17% Similarity=0.357 Sum_probs=139.3
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcC------------CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-c
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKY------------GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-D 79 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~------------G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~ 79 (349)
......++|||+|||+++|+++|++||+++ .+|..+++. +.++||||+|.+.++|++||+ +
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMALD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhcCC
Confidence 344567899999999999999999999875 234444443 345899999999999999996 3
Q ss_pred cCccCCcEEEEeecCCCCCC-------------------------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceE
Q 018875 80 THIINGKQVEIKRTIPKGSG-------------------------QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL 134 (349)
Q Consensus 80 ~~~~~g~~i~v~~~~~~~~~-------------------------~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~ 134 (349)
...|.++.|.|......... .......++|||.|||+.+|+++|+++|++||.|+
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 34788888888754322100 00112356899999999999999999999999999
Q ss_pred EEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCC
Q 018875 135 EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187 (349)
Q Consensus 135 ~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~ 187 (349)
.+.|+++..++++++||||+|.+.++|++||+.|++..|.++.|.|.++....
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 99999999999999999999999999999999999999999999999986543
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.1e-27 Score=212.83 Aligned_cols=166 Identities=22% Similarity=0.450 Sum_probs=146.6
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCcc---CCcEEEE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHII---NGKQVEI 90 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~---~g~~i~v 90 (349)
....-+.|||+.||.++.|++|.-+|++.|+|-+++||+|+.++.+||||||+|++.++|++||+.++.. .++.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999976633 7899999
Q ss_pred eecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCc-eEEEEEEecC-CCCCcccEEEEEecCHHHHHHHHHhC
Q 018875 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGK-VLEHQIIRDH-ETNRSRGFGFVIFDSEEVVDEMLSKG 168 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~-v~~v~i~~~~-~~g~~~G~afV~f~~~~~a~~Ai~~l 168 (349)
..+. .+++|||+|||.+.++|+|.+.|++.++ |++|.|.... ++.+.+|||||+|+++.+|..|.++|
T Consensus 159 c~Sv----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 159 CVSV----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred EEee----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 8877 6789999999999999999999999865 6666655543 56788999999999999999999986
Q ss_pred C--CcccCCeEEEEEeCCCCCCC
Q 018875 169 N--MIDMAGTQVEIKKAEPKKSS 189 (349)
Q Consensus 169 ~--~~~~~g~~i~v~~a~~~~~~ 189 (349)
- ...++++.|.|+||+++...
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred cCCceeecCCcceeeccCcccCC
Confidence 5 44689999999999987654
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=1.1e-26 Score=227.24 Aligned_cols=161 Identities=16% Similarity=0.246 Sum_probs=138.0
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc----CccCCcEEEEee
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT----HIINGKQVEIKR 92 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~----~~~~g~~i~v~~ 92 (349)
++++|||+|||+++|+++|+++|++||+|.+|.|++++ +||||+|++.++|++|++.+ ..+.+++|.|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 47899999999999999999999999999999999643 79999999999999999842 379999999999
Q ss_pred cCCCCCCCCC--------CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHH
Q 018875 93 TIPKGSGQSK--------DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164 (349)
Q Consensus 93 ~~~~~~~~~~--------~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~A 164 (349)
+..+...... .....+|+|.||++++|+++|+++|++||.|++|.|+++.. +++|||+|++.++|++|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHA 150 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHH
Confidence 8755422211 11234799999999999999999999999999999987643 35899999999999999
Q ss_pred HHhCCCcccCC--eEEEEEeCCCCC
Q 018875 165 LSKGNMIDMAG--TQVEIKKAEPKK 187 (349)
Q Consensus 165 i~~l~~~~~~g--~~i~v~~a~~~~ 187 (349)
++.||+.+|.+ +.|+|+++++..
T Consensus 151 ~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 151 KAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHhcCCcccCCceEEEEEEecCCC
Confidence 99999999975 589999988643
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=4.8e-26 Score=222.68 Aligned_cols=165 Identities=19% Similarity=0.330 Sum_probs=139.5
Q ss_pred CCCCceEEEcCCCc-CCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 15 GASPGKIFIGGLPK-DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 15 ~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
..+.++|||.|||+ ++|+++|+++|++||.|++|+|++++ ++||||+|.+.++|++||++++ .|.+++|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999999874 4899999999999999999655 7899999998
Q ss_pred ecCCCCCCCC---------------------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhccCc--eEEE
Q 018875 92 RTIPKGSGQS---------------------------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGK--VLEH 136 (349)
Q Consensus 92 ~~~~~~~~~~---------------------------------~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~--v~~v 136 (349)
++........ ...++++|||.|||+++|+++|+++|++||. |+.|
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i 426 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF 426 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE
Confidence 7644311000 0124578999999999999999999999998 8888
Q ss_pred EEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeE------EEEEeCCCC
Q 018875 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ------VEIKKAEPK 186 (349)
Q Consensus 137 ~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~------i~v~~a~~~ 186 (349)
++...+ +. .+++|||+|++.++|.+||.+||++.|.++. |+|.+++++
T Consensus 427 k~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 427 KFFPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EEecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 886543 22 5779999999999999999999999999985 999998764
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=6.1e-27 Score=189.56 Aligned_cols=172 Identities=23% Similarity=0.413 Sum_probs=154.7
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--ccCccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~--~~~~~~g~~i~v~ 91 (349)
+.+...||||+||+..++++.|.++|-+.++|.++.|.+++-+...+|||||||.++|+|+-|++ ++.++-+++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999998 5568999999999
Q ss_pred ecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEE-EEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 92 RTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH-QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v-~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
.+... +....-...|||+||.++++|..|.+.|+.||.+... .|+++..|+.+++|+||.|++.+++.+||..+|+
T Consensus 85 kas~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 85 KASAH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred ecccc---cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 88722 2222234789999999999999999999999988764 7888989999999999999999999999999999
Q ss_pred cccCCeEEEEEeCCCCCC
Q 018875 171 IDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 171 ~~~~g~~i~v~~a~~~~~ 188 (349)
+.+..++|+|+++..+..
T Consensus 162 q~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 162 QYLCNRPITVSYAFKKDT 179 (203)
T ss_pred chhcCCceEEEEEEecCC
Confidence 999999999999987654
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=195.33 Aligned_cols=169 Identities=27% Similarity=0.553 Sum_probs=154.4
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
+.+.+.|.|--||..+|+|||+.+|..+|+|++|++++|+-++.+.||.||.|.++++|++|+..++ .+..+.|+|..
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4556678899999999999999999999999999999999999999999999999999999999666 78899999999
Q ss_pred cCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcc
Q 018875 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~ 172 (349)
+.+... ..+...|||++||.++|..||+++|++||.|...+|+.|..++.++|.+||.|+..++|+.||+.||++.
T Consensus 118 ARPSs~----~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSD----SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChh----hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 887544 3466789999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCC--eEEEEEeCCCCC
Q 018875 173 MAG--TQVEIKKAEPKK 187 (349)
Q Consensus 173 ~~g--~~i~v~~a~~~~ 187 (349)
-.+ .+|.|+++....
T Consensus 194 P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPS 210 (360)
T ss_pred CCCCCCCeEEEecCCcc
Confidence 655 589999987653
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=1.2e-25 Score=222.44 Aligned_cols=171 Identities=21% Similarity=0.307 Sum_probs=144.5
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~ 93 (349)
...++|||+|||+.+|+++|+++|++||+|+.+.|+.+..++.++|||||+|.+.++|++||+.++ .|.++.|.|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999998899999999999999999999998554 888999999887
Q ss_pred CCCCCCC------------------------CCCCCCCeEEEcCCCCCC----------CHHHHHHHhhccCceEEEEEE
Q 018875 94 IPKGSGQ------------------------SKDFKTKKIFVGGIPSSV----------SEDELKNFFSKYGKVLEHQII 139 (349)
Q Consensus 94 ~~~~~~~------------------------~~~~~~~~l~V~nL~~~~----------t~e~l~~~F~~~G~v~~v~i~ 139 (349)
....... ....++++|+|.||.... ..++|+++|++||.|+.|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 5332111 012256789999996421 236799999999999999998
Q ss_pred ecC---CCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 140 RDH---ETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 140 ~~~---~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
++. .+...+|+|||+|+++++|++||++||+..|.++.|.|.+....
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 753 33456789999999999999999999999999999999987653
No 19
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.94 E-value=1.2e-26 Score=209.65 Aligned_cols=175 Identities=43% Similarity=0.819 Sum_probs=163.3
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~~ 95 (349)
+.++|||++|+|++|++.|+++|.+|++|.+|.+|+++.++++++|.||+|++++.+.++|. ..|+|+++.|+++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 88999999999999999999999999999999999999999999999999999999999988 57799999999999999
Q ss_pred CCCCCCCC--CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 96 KGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 96 ~~~~~~~~--~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
........ ...++|||..||.++++++|++.|++|+.|..+.++.|+.+.++++|+||+|++++++++++.+ .-++|
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~ 163 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDF 163 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeee
Confidence 88776543 3588999999999999999999999999999999999999999999999999999999999885 88899
Q ss_pred CCeEEEEEeCCCCCCCCCC
Q 018875 174 AGTQVEIKKAEPKKSSNPP 192 (349)
Q Consensus 174 ~g~~i~v~~a~~~~~~~~~ 192 (349)
+++.|+|..|.++....+.
T Consensus 164 ~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 164 NGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred cCceeeEeeccchhhcccc
Confidence 9999999999998876544
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.8e-26 Score=210.85 Aligned_cols=169 Identities=25% Similarity=0.468 Sum_probs=151.1
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecCCC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPK 96 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~~~ 96 (349)
.||||++||++++.++|.++|+.+|+|..+.++.+..+..++||+||+|+-.+++++|++... .|+++.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 799999999999999999999999999999999999999999999999999999999999544 699999999887655
Q ss_pred CCCCC----------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEE
Q 018875 97 GSGQS----------------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVI 154 (349)
Q Consensus 97 ~~~~~----------------------~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~ 154 (349)
..... .+.+...|.|.||||.+.+++|+.+|+.||.|.+|.|++......+ |||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEE
Confidence 43321 1123568999999999999999999999999999999977655555 999999
Q ss_pred ecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCCC
Q 018875 155 FDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 155 f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~~ 188 (349)
|.+..+|++||+.+|...|++++|.|+||.++..
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 9999999999999999999999999999988754
No 21
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=2.1e-26 Score=198.91 Aligned_cols=150 Identities=27% Similarity=0.569 Sum_probs=140.5
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecCCC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPK 96 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~~~ 96 (349)
.+|||+|||.++++++|+.+|++|+.|.+|.|+++ |+||..+++..|+.||.++| +|++..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999996 89999999999999999888 899999999988766
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCe
Q 018875 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (349)
Q Consensus 97 ~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~ 176 (349)
...+++|+|.||.+.++.++|++.|++||+|.+|+|+++ |+||.|+-.++|..||..|++.+|+++
T Consensus 75 ------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 75 ------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred ------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccc
Confidence 337789999999999999999999999999999999998 999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCC
Q 018875 177 QVEIKKAEPKKSSN 190 (349)
Q Consensus 177 ~i~v~~a~~~~~~~ 190 (349)
.++|.++.++....
T Consensus 141 ~m~vq~stsrlrta 154 (346)
T KOG0109|consen 141 RMHVQLSTSRLRTA 154 (346)
T ss_pred eeeeeeeccccccC
Confidence 99999998775443
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.6e-25 Score=206.53 Aligned_cols=169 Identities=25% Similarity=0.503 Sum_probs=147.3
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--ccCccCCcEEEEeecCC
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIP 95 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~--~~~~~~g~~i~v~~~~~ 95 (349)
.-+|.|.||||.|.+++|+.+|+.||.|.+|.|++.. .++.+|||||+|.+..+|.+||+ +.+.|.+++|.|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 6689999999999999999999999999999999766 66666999999999999999999 55699999999999875
Q ss_pred CCCCCC-----------------------------------------C--C-----------------------------
Q 018875 96 KGSGQS-----------------------------------------K--D----------------------------- 103 (349)
Q Consensus 96 ~~~~~~-----------------------------------------~--~----------------------------- 103 (349)
+..... + +
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 532100 0 0
Q ss_pred --------------CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC
Q 018875 104 --------------FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (349)
Q Consensus 104 --------------~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 169 (349)
....+|||.|||+++|+|+|.++|++||+|..+.|+.++.|+.++|.|||.|.+..+|++||+...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 011489999999999999999999999999999999999999999999999999999999999762
Q ss_pred -----C-cccCCeEEEEEeCCCCC
Q 018875 170 -----M-IDMAGTQVEIKKAEPKK 187 (349)
Q Consensus 170 -----~-~~~~g~~i~v~~a~~~~ 187 (349)
. ..|+++.|+|..+-++.
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchH
Confidence 2 56899999999887654
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.6e-24 Score=183.23 Aligned_cols=173 Identities=24% Similarity=0.391 Sum_probs=149.7
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC----ccCCcEEE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH----IINGKQVE 89 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~----~~~g~~i~ 89 (349)
+....-.|||.+||+++|..||+.+|++||.|...+|+.|.-++.+||.+||.|...++|+.||+.++ .-...+|.
T Consensus 123 ~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepIt 202 (360)
T KOG0145|consen 123 DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPIT 202 (360)
T ss_pred hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeE
Confidence 44455679999999999999999999999999999999999999999999999999999999999554 23346788
Q ss_pred EeecCCCCCCCCC-----------------------------------------------------------CCCCCeEE
Q 018875 90 IKRTIPKGSGQSK-----------------------------------------------------------DFKTKKIF 110 (349)
Q Consensus 90 v~~~~~~~~~~~~-----------------------------------------------------------~~~~~~l~ 110 (349)
|+++......... .....+||
T Consensus 203 VKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciF 282 (360)
T KOG0145|consen 203 VKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIF 282 (360)
T ss_pred EEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEE
Confidence 8876543221100 00123799
Q ss_pred EcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 111 VGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 111 V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
|.||.++++|..|+++|.+||.|.+|+|++|..+.++|||+||++.+-++|..||..||+..+.++.|.|.+...+
T Consensus 283 vYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 283 VYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987755
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=5.2e-23 Score=200.93 Aligned_cols=166 Identities=20% Similarity=0.319 Sum_probs=140.1
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTI 94 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~ 94 (349)
..++|||+|||.++|+++|+++|++||+|++|.|+.+..++++++||||+|.+.++|++|++.++ .|.+++|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999999888999999999999999999998655 7899999999843
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 018875 95 PKGSG--------------------------------------------------------------------------- 99 (349)
Q Consensus 95 ~~~~~--------------------------------------------------------------------------- 99 (349)
.....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 21000
Q ss_pred -----------CCCCCCCCeEEEcCCCCCCC----------HHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCH
Q 018875 100 -----------QSKDFKTKKIFVGGIPSSVS----------EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSE 158 (349)
Q Consensus 100 -----------~~~~~~~~~l~V~nL~~~~t----------~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~ 158 (349)
.......++|+|.||....+ ++||+++|++||.|+.|.|... ...+++||+|+++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~ 420 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSV 420 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCH
Confidence 00113456788899855443 3689999999999999999743 3568999999999
Q ss_pred HHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 159 EVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 159 ~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
++|++|++.||+..|+++.|.|.+....
T Consensus 421 e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 9999999999999999999999987654
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=4.3e-24 Score=189.71 Aligned_cols=170 Identities=21% Similarity=0.485 Sum_probs=152.1
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecCC
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIP 95 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~~ 95 (349)
-|+|||+.|.+++.|+.|+..|.+||+|++|.+.+|..|.++|+||||||+-+|.|..|++.++ .+.++.|+|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999665 88999999985432
Q ss_pred CCCCC-------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhC
Q 018875 96 KGSGQ-------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (349)
Q Consensus 96 ~~~~~-------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 168 (349)
-...+ ++...-.+|||..+..+++|+||+.+|+.||+|+.|.+.+......++||+||||++..+...||..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 22111 12224568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCeEEEEEeCCCCC
Q 018875 169 NMIDMAGTQVEIKKAEPKK 187 (349)
Q Consensus 169 ~~~~~~g~~i~v~~a~~~~ 187 (349)
|-.++.+..|+|-.+-...
T Consensus 273 NlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred chhhcccceEecccccCCC
Confidence 9999999999998776544
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.6e-23 Score=191.68 Aligned_cols=154 Identities=23% Similarity=0.495 Sum_probs=141.7
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecCCC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPK 96 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~~~ 96 (349)
..|||+ +++|+..|.++|+++++|.+++|+++. | +.+||||.|.++++|++||+.++ .+.+++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999998 6 99999999999999999999665 899999999998754
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCe
Q 018875 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (349)
Q Consensus 97 ~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~ 176 (349)
.. .|||.||+++++..+|.++|+.||+|..|++..+.+. +++| ||+|+++++|++||+.||+..+.++
T Consensus 76 ~~---------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k 143 (369)
T KOG0123|consen 76 PS---------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNGK 143 (369)
T ss_pred Cc---------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCCC
Confidence 22 3999999999999999999999999999999999654 9999 9999999999999999999999999
Q ss_pred EEEEEeCCCCCCCC
Q 018875 177 QVEIKKAEPKKSSN 190 (349)
Q Consensus 177 ~i~v~~a~~~~~~~ 190 (349)
+|.|.....+..+.
T Consensus 144 ki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 144 KIYVGLFERKEERE 157 (369)
T ss_pred eeEEeeccchhhhc
Confidence 99998888766544
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=7.9e-23 Score=175.25 Aligned_cols=141 Identities=22% Similarity=0.452 Sum_probs=123.2
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEEeecC
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTI 94 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~ 94 (349)
+...+||||+||..++||+-|..+|+++|+|++++|+.+. |.|.++.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e---------------------------------~~v~wa~ 49 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE---------------------------------LKVNWAT 49 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhh---------------------------------hcccccc
Confidence 4678899999999999999999999999999999999872 3444544
Q ss_pred CCCCCCCCC-CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 95 PKGSGQSKD-FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 95 ~~~~~~~~~-~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
....+.... ...-.|||..|...++-|+|++.|.+||+|.+++|++|..|.++|||+||.|...++|+.||++||++.|
T Consensus 50 ~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 50 APGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred CcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 442222222 2355799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCC
Q 018875 174 AGTQVEIKKAEPKKS 188 (349)
Q Consensus 174 ~g~~i~v~~a~~~~~ 188 (349)
..|.|+-.||..+..
T Consensus 130 G~R~IRTNWATRKp~ 144 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPS 144 (321)
T ss_pred ccceeeccccccCcc
Confidence 999999999998763
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=194.78 Aligned_cols=170 Identities=24% Similarity=0.431 Sum_probs=146.9
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEe
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT---GQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIK 91 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~---g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~ 91 (349)
..++|||.||++++|.++|..+|.+.|.|.++.|...++. -.|.||+||+|.++++|++|++.+ +.|+++.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3445999999999999999999999999999988876632 236699999999999999999964 59999999999
Q ss_pred ecCCCCCCC-----CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHH
Q 018875 92 RTIPKGSGQ-----SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 92 ~~~~~~~~~-----~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 166 (349)
.+..+...+ ......+.|+|.|||+.++..+|+++|..||.|..|+|++......++|||||+|.++++|.+|++
T Consensus 594 ~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 594 ISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFD 673 (725)
T ss_pred eccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHH
Confidence 987222211 122234689999999999999999999999999999999986667789999999999999999999
Q ss_pred hCCCcccCCeEEEEEeCCCC
Q 018875 167 KGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 167 ~l~~~~~~g~~i~v~~a~~~ 186 (349)
+|..+.|.++.|.++|+..-
T Consensus 674 al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 674 ALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred hhcccceechhhheehhccc
Confidence 99999999999999999864
No 29
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.2e-22 Score=171.14 Aligned_cols=178 Identities=20% Similarity=0.439 Sum_probs=152.5
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC---ccCC--c
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH---IING--K 86 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~---~~~g--~ 86 (349)
++...++++|||+-|.+.-.|||++.+|..||+|++|.+++.. ++.+||+|||.|.+..+|..||..+| .+.+ .
T Consensus 13 esrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 13 ESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred ccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCcc
Confidence 3344578999999999999999999999999999999999987 89999999999999999999999766 3333 4
Q ss_pred EEEEeecCCCCCCC------------------------------------------------------------------
Q 018875 87 QVEIKRTIPKGSGQ------------------------------------------------------------------ 100 (349)
Q Consensus 87 ~i~v~~~~~~~~~~------------------------------------------------------------------ 100 (349)
.|.|+++...++..
T Consensus 92 SLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~a 171 (371)
T KOG0146|consen 92 SLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNA 171 (371)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhh
Confidence 56666554332200
Q ss_pred --------------------------------------------------------------------------------
Q 018875 101 -------------------------------------------------------------------------------- 100 (349)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (349)
T Consensus 172 ngl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~ 251 (371)
T KOG0146|consen 172 NGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQ 251 (371)
T ss_pred cccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHH
Confidence
Q ss_pred ----------------------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEE
Q 018875 101 ----------------------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152 (349)
Q Consensus 101 ----------------------------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~af 152 (349)
.+..+.+.|||..||.+..+.||.+.|-.||.|+..+|..|+.|+.+|+|+|
T Consensus 252 ~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGF 331 (371)
T KOG0146|consen 252 QYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGF 331 (371)
T ss_pred HHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceee
Confidence 0001335799999999999999999999999999999999999999999999
Q ss_pred EEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCCCCC
Q 018875 153 VIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 190 (349)
Q Consensus 153 V~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~~~~ 190 (349)
|.|+++.+|+.||.+||+..|.=+.|+|.+.+++..++
T Consensus 332 VSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 332 VSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred EecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999999999887653
No 30
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.87 E-value=9.4e-23 Score=190.50 Aligned_cols=177 Identities=21% Similarity=0.422 Sum_probs=154.1
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v 90 (349)
...+.+.+|||+-.|+..++.-+|.+||+.++.|.+|.|+.|+.+.++++.|||+|.|.+.+..||. ..+.+.+.+|.|
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 3445567899999999999999999999999999999999999999999999999999999999987 666888899999
Q ss_pred eecCCCCCCCC----------CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHH
Q 018875 91 KRTIPKGSGQS----------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEV 160 (349)
Q Consensus 91 ~~~~~~~~~~~----------~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~ 160 (349)
+.......... -..+-..|+|+||.+++|+++|+.+|++||.|+.|.+++|.+|+++++|+||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 87543322111 01122349999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcccCCeEEEEEeCCCCCC
Q 018875 161 VDEMLSKGNMIDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 161 a~~Ai~~l~~~~~~g~~i~v~~a~~~~~ 188 (349)
|++|+++||+.+|.++.|+|.....+..
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecc
Confidence 9999999999999999999987665443
No 31
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.86 E-value=6.2e-21 Score=176.21 Aligned_cols=167 Identities=19% Similarity=0.340 Sum_probs=136.1
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc-CccCCcEEEEee
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKR 92 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~-~~~~g~~i~v~~ 92 (349)
.......|-|..|||++|++||++||+.| .|+++++.+. +++..|-|||||++++++++||++. ..+..+-|+|-.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 34556789999999999999999999998 4666555554 7899999999999999999999943 467778888887
Q ss_pred cCCCCCCCC-------CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEE-EEEEecCCCCCcccEEEEEecCHHHHHHH
Q 018875 93 TIPKGSGQS-------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE-HQIIRDHETNRSRGFGFVIFDSEEVVDEM 164 (349)
Q Consensus 93 ~~~~~~~~~-------~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~-v~i~~~~~~g~~~G~afV~f~~~~~a~~A 164 (349)
+...+.... .....-+|.+..||+.||++||.++|+-.-.|.. |.++.+ ..+++.+.|||.|++.+.|++|
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHH
Confidence 755443221 1135568999999999999999999998877776 444554 5677999999999999999999
Q ss_pred HHhCCCcccCCeEEEEEeCCC
Q 018875 165 LSKGNMIDMAGTQVEIKKAEP 185 (349)
Q Consensus 165 i~~l~~~~~~g~~i~v~~a~~ 185 (349)
|.+ |...|..+.|+|..+..
T Consensus 162 l~r-hre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 162 LGR-HRENIGHRYIEVFRSSR 181 (510)
T ss_pred HHH-HHHhhccceEEeehhHH
Confidence 997 88899999999987653
No 32
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.4e-21 Score=177.30 Aligned_cols=177 Identities=21% Similarity=0.419 Sum_probs=153.5
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC---ccCC--
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH---IING-- 85 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~---~~~g-- 85 (349)
.......+++|||+-|++.+||.||+++|++||.|++|.|+++. .+.+||+|||.|++.|.|..||+.+| .+++
T Consensus 117 E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs 195 (510)
T KOG0144|consen 117 ERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCS 195 (510)
T ss_pred hhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCC
Confidence 33344568899999999999999999999999999999999998 89999999999999999999999665 4444
Q ss_pred cEEEEeecCCCCCCCCCC--------------------------------------------------------------
Q 018875 86 KQVEIKRTIPKGSGQSKD-------------------------------------------------------------- 103 (349)
Q Consensus 86 ~~i~v~~~~~~~~~~~~~-------------------------------------------------------------- 103 (349)
.+|.|+++.+++.+..+.
T Consensus 196 ~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~q 275 (510)
T KOG0144|consen 196 QPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQ 275 (510)
T ss_pred CceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHH
Confidence 578888887665421000
Q ss_pred --------------------------------------------------------------------------------
Q 018875 104 -------------------------------------------------------------------------------- 103 (349)
Q Consensus 104 -------------------------------------------------------------------------------- 103 (349)
T Consensus 276 q~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~ 355 (510)
T KOG0144|consen 276 QAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAG 355 (510)
T ss_pred HHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccccccccc
Confidence
Q ss_pred ------------------------------------------------------------------CCCCeEEEcCCCCC
Q 018875 104 ------------------------------------------------------------------FKTKKIFVGGIPSS 117 (349)
Q Consensus 104 ------------------------------------------------------------------~~~~~l~V~nL~~~ 117 (349)
.+-..|||.+||.+
T Consensus 356 ~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqe 435 (510)
T KOG0144|consen 356 TTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQE 435 (510)
T ss_pred ccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchh
Confidence 01125999999999
Q ss_pred CCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCCC
Q 018875 118 VSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 118 ~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~~ 188 (349)
.-+.+|-..|..||.|+..++.-|+.|+.+++|.||.|++..+|+.||..||+..|..+.++|.+.+.+..
T Consensus 436 fgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 436 FGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred hhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998877644
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.9e-20 Score=175.24 Aligned_cols=162 Identities=23% Similarity=0.486 Sum_probs=145.2
Q ss_pred EEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecCCCCC
Q 018875 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGS 98 (349)
Q Consensus 21 lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~~~~~ 98 (349)
|||.||++++|..+|.++|+.||+|.+|+++.+.+ + +++| ||+|+++++|++|++.++ .+.++.|.|-....+.+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999973 4 9999 999999999999999665 88999999988776655
Q ss_pred CCCCC----CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC
Q 018875 99 GQSKD----FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (349)
Q Consensus 99 ~~~~~----~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~ 174 (349)
..... ...+.++|.+++.++++++|+++|.+++.|..+.++.+. .+++++|+||.|+++++|..|++.|+...+.
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 44322 245679999999999999999999999999999999985 4559999999999999999999999999999
Q ss_pred CeEEEEEeCCCC
Q 018875 175 GTQVEIKKAEPK 186 (349)
Q Consensus 175 g~~i~v~~a~~~ 186 (349)
+..+.|..+..+
T Consensus 235 ~~~~~V~~aqkk 246 (369)
T KOG0123|consen 235 DKELYVGRAQKK 246 (369)
T ss_pred ccceeecccccc
Confidence 999999887764
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1.9e-19 Score=146.31 Aligned_cols=151 Identities=23% Similarity=0.364 Sum_probs=127.2
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--ccCccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~--~~~~~~g~~i~v~~ 92 (349)
...+++|||+|||.++-+.+|+++|.+|+.|.+|.|.... ....||||+|+++.+|+.||. +.-.+++..|.|++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 3568899999999999999999999999999998886643 344799999999999999998 44589999999998
Q ss_pred cCCCCCCC----------------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccE
Q 018875 93 TIPKGSGQ----------------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF 150 (349)
Q Consensus 93 ~~~~~~~~----------------------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~ 150 (349)
+..-.... ........|.|+.||.+.+|+||++++.+.|+|....+.+|- .
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~ 152 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------V 152 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------c
Confidence 75432111 111244579999999999999999999999999999998873 8
Q ss_pred EEEEecCHHHHHHHHHhCCCcccCC
Q 018875 151 GFVIFDSEEVVDEMLSKGNMIDMAG 175 (349)
Q Consensus 151 afV~f~~~~~a~~Ai~~l~~~~~~g 175 (349)
..|+|...|+++-|+.+|+.+.+..
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred eeeeeeehhhHHHHHHhhccccccC
Confidence 9999999999999999998877654
No 35
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=1.6e-19 Score=147.74 Aligned_cols=86 Identities=30% Similarity=0.639 Sum_probs=80.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
....++|||.|||+++||++|+++|++||.|++|.|+.+..++++++||||+|+++++|++||+.|+++.|+++.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018875 183 AEPKKS 188 (349)
Q Consensus 183 a~~~~~ 188 (349)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 986543
No 36
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.81 E-value=2.5e-18 Score=168.46 Aligned_cols=79 Identities=15% Similarity=0.402 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~ 93 (349)
...++|||+|||+++++++|+++|+.||+|++++|++++.+++++|||||+|.+.++|.+||+.++ .|.++.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 356799999999999999999999999999999999999889999999999999999999999665 788999998765
Q ss_pred C
Q 018875 94 I 94 (349)
Q Consensus 94 ~ 94 (349)
.
T Consensus 282 i 282 (612)
T TIGR01645 282 V 282 (612)
T ss_pred C
Confidence 5
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.78 E-value=5.4e-18 Score=143.04 Aligned_cols=161 Identities=19% Similarity=0.332 Sum_probs=135.0
Q ss_pred CCCceEEEcCCCcCCcHHHHHH----HHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 16 ASPGKIFIGGLPKDTTYATFNK----HFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~----~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
.+..||||.||+..+..++|+. +|++||.|.+|.... +.+.+|-|||.|.+.+.|..|+..++ .+-++.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3444999999999999999998 999999999988877 56788999999999999999999766 77888888
Q ss_pred EeecCCCCCCC----------------------------------------------CCCCCCCeEEEcCCCCCCCHHHH
Q 018875 90 IKRTIPKGSGQ----------------------------------------------SKDFKTKKIFVGGIPSSVSEDEL 123 (349)
Q Consensus 90 v~~~~~~~~~~----------------------------------------------~~~~~~~~l~V~nL~~~~t~e~l 123 (349)
|.++..+.... ....+...||+.|||.+++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 87765432211 01335668999999999999999
Q ss_pred HHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC-CeEEEEEeCC
Q 018875 124 KNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA-GTQVEIKKAE 184 (349)
Q Consensus 124 ~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~-g~~i~v~~a~ 184 (349)
..+|++|.-.++|+++..+ ++.|||+|.+...|..|.+.|....|. ..+++|.+++
T Consensus 164 ~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999998763 349999999999999999999988876 7888887664
No 38
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.76 E-value=2.3e-17 Score=150.17 Aligned_cols=167 Identities=23% Similarity=0.394 Sum_probs=141.1
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHH-hcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHF-GKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F-~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
+..+.|||.|||+++.+++|+++| ++.++|+-|.|+.|. +++++++|.|||+++|.+++|++.++ .+++++|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 445669999999999999999999 567999999999998 89999999999999999999999554 89999999976
Q ss_pred cCCCCCCC------------------------------------------C-----------------------------
Q 018875 93 TIPKGSGQ------------------------------------------S----------------------------- 101 (349)
Q Consensus 93 ~~~~~~~~------------------------------------------~----------------------------- 101 (349)
....+..+ .
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 43311100 0
Q ss_pred ----------CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCc
Q 018875 102 ----------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI 171 (349)
Q Consensus 102 ----------~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~ 171 (349)
..+...++||.||.+.+....|++.|.-.|.|+.|.+--+++. .++++|.|+|.++-.|.+||..|+..
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG-~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG-NSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc-ccCCeeEEEecchHHHHHHHHhhccC
Confidence 0112347899999999999999999999999999999988664 89999999999999999999999988
Q ss_pred ccCCeEEEEEeCC
Q 018875 172 DMAGTQVEIKKAE 184 (349)
Q Consensus 172 ~~~g~~i~v~~a~ 184 (349)
-+..++..+.+.+
T Consensus 280 g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 280 GLFDRRMTVRLDR 292 (608)
T ss_pred CCccccceeeccc
Confidence 8888887777644
No 39
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=3e-18 Score=146.06 Aligned_cols=148 Identities=25% Similarity=0.455 Sum_probs=124.6
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecCCC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPK 96 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~~~ 96 (349)
..|||++||+.+.+.+|+.||..|+.|.++.|.. +|+||+|++..+|+.|+..++ +|.+..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4699999999999999999999999999888776 689999999999999998555 677777777777632
Q ss_pred CC----------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHH
Q 018875 97 GS----------------GQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEV 160 (349)
Q Consensus 97 ~~----------------~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~ 160 (349)
.. ..........|+|.+|+..+.|.+|+++|.++|++..+.+... ++||+|++.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~--------~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRN--------FAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhcc--------ccceeehhhhh
Confidence 11 0112345568999999999999999999999999966655333 99999999999
Q ss_pred HHHHHHhCCCcccCCeEEEEEe
Q 018875 161 VDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 161 a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
|.+||++|+...+.++.|++..
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhhcchhccchhhcCceeeecc
Confidence 9999999999999999999943
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=2.9e-17 Score=134.33 Aligned_cols=83 Identities=30% Similarity=0.620 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~ 91 (349)
....+++|||+|||+++|+++|+++|++|++|++|.|+.++.++++++||||+|+++++|++||+.+ +.|+++.|+|+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999855 48999999999
Q ss_pred ecCCC
Q 018875 92 RTIPK 96 (349)
Q Consensus 92 ~~~~~ 96 (349)
++.++
T Consensus 110 ~a~~~ 114 (144)
T PLN03134 110 PANDR 114 (144)
T ss_pred eCCcC
Confidence 98754
No 41
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.2e-16 Score=134.16 Aligned_cols=83 Identities=23% Similarity=0.421 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
.+..+|.|.||+.+++|++|+++|.+||.|.+|.|.++++|+.++|||||+|++.++|++||+.||+.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 018875 184 EPK 186 (349)
Q Consensus 184 ~~~ 186 (349)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 985
No 42
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=1.4e-16 Score=153.35 Aligned_cols=165 Identities=21% Similarity=0.324 Sum_probs=130.0
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
...+.+.|+|+|||..+..++|.+.|..|++|..+.|.+.- --|.|+|.++.+|.+|+..+. .+...++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G------~~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG------TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCccc------ceeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 55677899999999999999999999999999998555322 149999999999999998554 3444444443
Q ss_pred ecCCCCCC-------------------C-----------C---------------CCC-CCCeEEEcCCCCCCCHHHHHH
Q 018875 92 RTIPKGSG-------------------Q-----------S---------------KDF-KTKKIFVGGIPSSVSEDELKN 125 (349)
Q Consensus 92 ~~~~~~~~-------------------~-----------~---------------~~~-~~~~l~V~nL~~~~t~e~l~~ 125 (349)
|+...... . . ... ..++|||.||++++|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 32100000 0 0 001 122499999999999999999
Q ss_pred HhhccCceEEEEEEecCCCC---CcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 126 FFSKYGKVLEHQIIRDHETN---RSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 126 ~F~~~G~v~~v~i~~~~~~g---~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
+|.+.|.|..|.|.+.++.. .+.||+||+|.++++|++|+++|+++.|+++.|.|.++.
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999999998875432 345999999999999999999999999999999999998
No 43
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.69 E-value=1.4e-16 Score=149.52 Aligned_cols=162 Identities=20% Similarity=0.324 Sum_probs=128.5
Q ss_pred eEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecCCCC
Q 018875 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKG 97 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~~~~ 97 (349)
.|||+||..++|+++|+.+|++|+.|+.|.++++..|+++++|+||+|.+.++|.+|++.++ +|.++.|+|...+.+.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 39999999999999999999999999999999999899999999999999999999999665 8889999875432111
Q ss_pred CCCC--------------------------------------------------------------------CC------
Q 018875 98 SGQS--------------------------------------------------------------------KD------ 103 (349)
Q Consensus 98 ~~~~--------------------------------------------------------------------~~------ 103 (349)
.... +.
T Consensus 360 ~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 439 (549)
T KOG0147|consen 360 DTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF 439 (549)
T ss_pred ccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc
Confidence 1000 00
Q ss_pred -CCCCeEEEcCCCC--CCC--------HHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcc
Q 018875 104 -FKTKKIFVGGIPS--SVS--------EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (349)
Q Consensus 104 -~~~~~l~V~nL~~--~~t--------~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~ 172 (349)
.++.++.|.|+=. +.| .|+|.+.+.+||.|..|.|-++ +.|+.||.|.+.++|.+|+.+||+.+
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrW 514 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRW 514 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhh
Confidence 1222344444311 111 3778888999999988887655 33799999999999999999999999
Q ss_pred cCCeEEEEEeCCCC
Q 018875 173 MAGTQVEIKKAEPK 186 (349)
Q Consensus 173 ~~g~~i~v~~a~~~ 186 (349)
|.++.|++.+....
T Consensus 515 F~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 515 FAGRMITAKYLPLE 528 (549)
T ss_pred hccceeEEEEeehh
Confidence 99999999887654
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.68 E-value=3.6e-15 Score=132.55 Aligned_cols=167 Identities=20% Similarity=0.298 Sum_probs=134.3
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccC
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITD--------SVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IIN 84 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--------~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~ 84 (349)
+...+.|||.+||.++|.+++.++|++||.|.. |+|.++. .++.||-|.|.|...++++.|++.+. .+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344556999999999999999999999998763 6777776 59999999999999999999999554 788
Q ss_pred CcEEEEeecCCCCC----------------------------------CCCCCCCCCeEEEcCCCC----CCC-------
Q 018875 85 GKQVEIKRTIPKGS----------------------------------GQSKDFKTKKIFVGGIPS----SVS------- 119 (349)
Q Consensus 85 g~~i~v~~~~~~~~----------------------------------~~~~~~~~~~l~V~nL~~----~~t------- 119 (349)
++.|+|+.+.-... ...+....++|.|.||=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 99999987642111 011222456888888731 222
Q ss_pred HHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 120 EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 120 ~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
+++|.+.+++||.|..|.|.... +.|.+.|.|.+.++|+.||+.|++..|++++|+.+....+
T Consensus 290 kedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 46777889999999999998654 4669999999999999999999999999999999876544
No 45
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.1e-16 Score=139.57 Aligned_cols=103 Identities=21% Similarity=0.384 Sum_probs=91.6
Q ss_pred eecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
+...+.........+-+||||.-|+++++|..|+++|+.||+|+.|.|+.++.|++++|||||+|+++.++.+|.++.++
T Consensus 86 ~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG 165 (335)
T KOG0113|consen 86 KLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG 165 (335)
T ss_pred HhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC
Confidence 34455555566667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCeEEEEEeCCCCCCCCCCC
Q 018875 171 IDMAGTQVEIKKAEPKKSSNPPP 193 (349)
Q Consensus 171 ~~~~g~~i~v~~a~~~~~~~~~~ 193 (349)
+.|+++.|.|++...+......|
T Consensus 166 ~~Idgrri~VDvERgRTvkgW~P 188 (335)
T KOG0113|consen 166 IKIDGRRILVDVERGRTVKGWLP 188 (335)
T ss_pred ceecCcEEEEEeccccccccccc
Confidence 99999999999988776554433
No 46
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=3.5e-16 Score=145.76 Aligned_cols=85 Identities=25% Similarity=0.402 Sum_probs=80.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
.....++|||.|||+++||++|+++|++|++|++|+|+++..++++++||||+|+++++|++||++|+++.|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC
Q 018875 182 KAEPK 186 (349)
Q Consensus 182 ~a~~~ 186 (349)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98764
No 47
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.67 E-value=2.1e-15 Score=126.43 Aligned_cols=155 Identities=15% Similarity=0.244 Sum_probs=115.1
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHccC--cc---CCcEE
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKD-RYTGQPRGFGFITYADPSVVDKVIEDTH--II---NGKQV 88 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~-~~~g~~kG~afVef~~~~~a~~al~~~~--~~---~g~~i 88 (349)
....+||||.+||.++...||..+|..|--.+.+.|... +.....+-+|||+|.+..+|.+|+..++ .| ....|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 345899999999999999999999999866666665443 3344566899999999999999999766 22 34566
Q ss_pred EEeecCCCCCCCC-------------------------------------------------C-----------------
Q 018875 89 EIKRTIPKGSGQS-------------------------------------------------K----------------- 102 (349)
Q Consensus 89 ~v~~~~~~~~~~~-------------------------------------------------~----------------- 102 (349)
.|+.+++...... +
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 6665543211000 0
Q ss_pred ----------------CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHH
Q 018875 103 ----------------DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 103 ----------------~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 166 (349)
.....||||.||..+|||++|+.+|+.|--...++|... .+. ..|||+|++.+.|..|+.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFADFEEIEQATDAMN 266 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEeecHHHHHHHHHHHH
Confidence 001237999999999999999999999976666666432 222 289999999999999999
Q ss_pred hCCCccc
Q 018875 167 KGNMIDM 173 (349)
Q Consensus 167 ~l~~~~~ 173 (349)
.|++..|
T Consensus 267 ~lqg~~~ 273 (284)
T KOG1457|consen 267 HLQGNLL 273 (284)
T ss_pred Hhhccee
Confidence 8877654
No 48
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=4.3e-16 Score=119.48 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
+++||||+||++.+|||+|.++|+++|+|..|.+-.|+.+..+.|||||+|.+.++|+.|++-++++.|+.++|.|+|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 018875 185 PK 186 (349)
Q Consensus 185 ~~ 186 (349)
--
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 54
No 49
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=3.5e-16 Score=132.44 Aligned_cols=81 Identities=30% Similarity=0.663 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC-ccCCcEEEEeec
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEIKRT 93 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~-~~~g~~i~v~~~ 93 (349)
+...++|||++|+|++++|+|+++|++||+|++.+|+.|+.++++|||+||+|.|.++|++|+++.+ .|++|+..|+.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 3446789999999999999999999999999999999999999999999999999999999999766 899999999887
Q ss_pred CC
Q 018875 94 IP 95 (349)
Q Consensus 94 ~~ 95 (349)
..
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 65
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.64 E-value=2.6e-14 Score=132.71 Aligned_cols=166 Identities=19% Similarity=0.285 Sum_probs=127.7
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecC
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTI 94 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~ 94 (349)
....+|.|..||+.||++||.+||+.+-.|.+..++.....+++.+-|||.|++.++|++||. +...|..+-|+|..+.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 678899999999999999999999998777764434433477899999999999999999998 5557777777774421
Q ss_pred CCCC-----------------------C-----------------------------------C---------------C
Q 018875 95 PKGS-----------------------G-----------------------------------Q---------------S 101 (349)
Q Consensus 95 ~~~~-----------------------~-----------------------------------~---------------~ 101 (349)
..+. . . .
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 0000 0 0 0
Q ss_pred CC----------------CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHH
Q 018875 102 KD----------------FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165 (349)
Q Consensus 102 ~~----------------~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai 165 (349)
.. .....+++..||+..++.+|..+|+..-.+ .|.|.-. ++++..+.|+|+|++.++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhh
Confidence 00 011358889999999999999999987555 4554443 67889999999999999999999
Q ss_pred HhCCCcccCCeEEEEEeCC
Q 018875 166 SKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 166 ~~l~~~~~~g~~i~v~~a~ 184 (349)
.+ ++..+..+-|++....
T Consensus 339 sk-d~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 339 GK-DGANMGHRYVELFLNG 356 (510)
T ss_pred cc-CCcccCcceeeecccC
Confidence 87 8888888888886653
No 51
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=4.8e-15 Score=140.82 Aligned_cols=177 Identities=24% Similarity=0.367 Sum_probs=136.3
Q ss_pred CCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 9 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
...+......++|||++||..+++++++|+++.|+++....++.+..++-+++|||.+|.++.....|++.++ .+-.+
T Consensus 280 ~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 280 PASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred ccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 3344556678899999999999999999999999999999999999999999999999999999999999766 56667
Q ss_pred EEEEeecCCCCCCCCC--------------------CCCCCeEEEcCCC--CCC-C-------HHHHHHHhhccCceEEE
Q 018875 87 QVEIKRTIPKGSGQSK--------------------DFKTKKIFVGGIP--SSV-S-------EDELKNFFSKYGKVLEH 136 (349)
Q Consensus 87 ~i~v~~~~~~~~~~~~--------------------~~~~~~l~V~nL~--~~~-t-------~e~l~~~F~~~G~v~~v 136 (349)
+|.|..+......... ..++..|.+.|+= .++ . .|+|+..+.+|+.|..|
T Consensus 360 ~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v 439 (500)
T KOG0120|consen 360 KLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSV 439 (500)
T ss_pred eeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEE
Confidence 8887766543322211 1123333333321 111 1 14456678899999999
Q ss_pred EEEecCCC---CCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCC
Q 018875 137 QIIRDHET---NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP 185 (349)
Q Consensus 137 ~i~~~~~~---g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~ 185 (349)
.|+.+... .-..|..||+|.+.+++++|+++|++.++.++.|...+-..
T Consensus 440 ~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 440 EIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred ecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 99887322 23356789999999999999999999999999999987654
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=2.3e-15 Score=107.58 Aligned_cols=70 Identities=34% Similarity=0.765 Sum_probs=67.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 109 IFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 109 l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
|||.|||+++|+++|+++|++||.|..+.++.+ .++.++++|||+|++.++|++|++.|++..+.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 7788999999999999999999999999999999985
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.62 E-value=1.1e-14 Score=131.71 Aligned_cols=149 Identities=23% Similarity=0.481 Sum_probs=118.1
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecC-
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTI- 94 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~- 94 (349)
.++|||+|||+++|+++|.++|.+|++|..+.|+.++.++++++||||+|.++++|..|++.++ .|.++.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999999999999554 8999999999854
Q ss_pred ---CCCCCC----------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEe
Q 018875 95 ---PKGSGQ----------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155 (349)
Q Consensus 95 ---~~~~~~----------------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f 155 (349)
...... ........+++.+++..++.+++..+|..++.+..+.+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 222211 1223556899999999999999999999999997777766654443433344444
Q ss_pred cCHHHHHHHHH
Q 018875 156 DSEEVVDEMLS 166 (349)
Q Consensus 156 ~~~~~a~~Ai~ 166 (349)
.....+..++.
T Consensus 275 ~~~~~~~~~~~ 285 (306)
T COG0724 275 EASKDALESNS 285 (306)
T ss_pred hHHHhhhhhhc
Confidence 44444444433
No 54
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=3e-15 Score=121.16 Aligned_cols=78 Identities=24% Similarity=0.487 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
-.++|||.||+..+++.||+.+|..||+|..|+|... +.+||||||+++.+|+.|+..|++..|++..|+|++++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4679999999999999999999999999999999885 56799999999999999999999999999999999988
Q ss_pred CCC
Q 018875 185 PKK 187 (349)
Q Consensus 185 ~~~ 187 (349)
-+.
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 653
No 55
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=3.2e-15 Score=126.68 Aligned_cols=83 Identities=29% Similarity=0.550 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
.+..-++|||++|+|+++.|+|++.|++||+|+++.|+.|+.++++|||+||+|.|.++|++|++. .+..|++|+..|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 344567899999999999999999999999999999999999999999999999999999999986 5567999999998
Q ss_pred eCCC
Q 018875 182 KAEP 185 (349)
Q Consensus 182 ~a~~ 185 (349)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8765
No 56
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.59 E-value=5.8e-15 Score=144.75 Aligned_cols=110 Identities=15% Similarity=0.259 Sum_probs=94.3
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKY--GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~--G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
...++|||+|||+++|+++|+++|++| ++|++|.+++ +||||+|++.++|++||+.++ .|.++.|+|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456789999999999999999999999 9999998764 499999999999999998654 8999999999
Q ss_pred ecCCCCCCC------------------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCce
Q 018875 92 RTIPKGSGQ------------------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKV 133 (349)
Q Consensus 92 ~~~~~~~~~------------------------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v 133 (349)
++.+..... .....+.++++.||+++++++.|.++|..++.|
T Consensus 303 ~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~ 368 (578)
T TIGR01648 303 LAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPI 368 (578)
T ss_pred EccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCccc
Confidence 997754331 112356789999999999999999999998764
No 57
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.56 E-value=1.1e-14 Score=120.85 Aligned_cols=83 Identities=28% Similarity=0.446 Sum_probs=79.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
...+|.|-||.+.+|.++|..+|++||.|-+|.|+.|+.|..+++||||.|.+..+|+.|+++|++..|+++.|.|.+|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 018875 185 PKK 187 (349)
Q Consensus 185 ~~~ 187 (349)
--.
T Consensus 92 ygr 94 (256)
T KOG4207|consen 92 YGR 94 (256)
T ss_pred cCC
Confidence 544
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=2.4e-14 Score=102.54 Aligned_cols=70 Identities=34% Similarity=0.706 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 109 IFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 109 l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
|+|.|||+++++++|+++|+.++.|..+.+..++. ++++++|||+|.++++|++|++.+++..+.++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 89999999999999999999999998999999885
No 59
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=1.3e-14 Score=128.06 Aligned_cols=82 Identities=28% Similarity=0.526 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
....++|+|+|||+...|.||+.+|++||.|.+|.|+.+. .-+|||+||+|++.+||++|.++||+..|.+|+|+|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3467899999999999999999999999999999999874 34899999999999999999999999999999999999
Q ss_pred CCCC
Q 018875 183 AEPK 186 (349)
Q Consensus 183 a~~~ 186 (349)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8865
No 60
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.55 E-value=1.1e-13 Score=124.12 Aligned_cols=171 Identities=18% Similarity=0.246 Sum_probs=136.7
Q ss_pred CCCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH----ccCc
Q 018875 7 SDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE----DTHI 82 (349)
Q Consensus 7 ~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~----~~~~ 82 (349)
.+..++...+.+..|.|.+|-..++|.+|.+.++.||+|.-+.++..+ -.|.|+|+|.+.|+.++. +...
T Consensus 20 e~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~ 93 (494)
T KOG1456|consen 20 EDNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIY 93 (494)
T ss_pred ccCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCccc
Confidence 344556677888999999999999999999999999999988888765 379999999999999876 3336
Q ss_pred cCCcEEEEeecCCCCCCCCC---CCCCCeEE--EcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC
Q 018875 83 INGKQVEIKRTIPKGSGQSK---DFKTKKIF--VGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS 157 (349)
Q Consensus 83 ~~g~~i~v~~~~~~~~~~~~---~~~~~~l~--V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~ 157 (349)
+.++...+..++.+...... ..+.+.|. |-|--+.+|.+.|..++..+|.|.+|.|++. ++. .|.|||++
T Consensus 94 i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFds 168 (494)
T KOG1456|consen 94 IAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDS 168 (494)
T ss_pred ccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeech
Confidence 77777777777555443332 22334444 4455578999999999999999999999876 222 79999999
Q ss_pred HHHHHHHHHhCCCcccCC--eEEEEEeCCCCCC
Q 018875 158 EEVVDEMLSKGNMIDMAG--TQVEIKKAEPKKS 188 (349)
Q Consensus 158 ~~~a~~Ai~~l~~~~~~g--~~i~v~~a~~~~~ 188 (349)
.+.|++|.++||+.+|.. .+|+|++|++.+-
T Consensus 169 v~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 169 VEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred hHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 999999999999999865 6889999998653
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.1e-14 Score=122.13 Aligned_cols=82 Identities=20% Similarity=0.394 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
-.+.++|.|.|||.+++|++|+++|.+|+.|..|.|.+++.|+.+||||||.|.+.++|++||+.++ -++...|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 3477899999999999999999999999999999999999999999999999999999999999665 77888999999
Q ss_pred cCCC
Q 018875 93 TIPK 96 (349)
Q Consensus 93 ~~~~ 96 (349)
+.|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 62
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=2.7e-14 Score=101.97 Aligned_cols=68 Identities=25% Similarity=0.691 Sum_probs=62.0
Q ss_pred EEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 21 lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
|||+|||+++|+++|+++|++|++|..+.++.+ .+++++++|||+|++.++|++|++.++ .+.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999998 488899999999999999999999554 77777663
No 63
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.4e-14 Score=111.24 Aligned_cols=82 Identities=21% Similarity=0.380 Sum_probs=75.2
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--ccCccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~--~~~~~~g~~i~v 90 (349)
.+...++||||+||+..+|||+|.++|+++|+|..|+|=.|+.+..+.|||||+|-+.++|+.|++ +...++.++|.+
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 345678999999999999999999999999999999999999999999999999999999999999 445889999999
Q ss_pred eecC
Q 018875 91 KRTI 94 (349)
Q Consensus 91 ~~~~ 94 (349)
.|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 8764
No 64
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.54 E-value=3.5e-13 Score=122.31 Aligned_cols=159 Identities=18% Similarity=0.259 Sum_probs=129.1
Q ss_pred CceEEEcCCC-cCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeecC
Q 018875 18 PGKIFIGGLP-KDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRTI 94 (349)
Q Consensus 18 ~~~lfV~nLp-~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~~ 94 (349)
.++|.|.||- ..+|.+.|..+|.-||.|..|+|+.++.+ .|.|+|.|...|+.|++++ +.+.++.|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 6789999995 55999999999999999999999998753 6999999999999999954 58889999998876
Q ss_pred CCCCCCC-------------------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCC
Q 018875 95 PKGSGQS-------------------------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHE 143 (349)
Q Consensus 95 ~~~~~~~-------------------------------~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~ 143 (349)
....... --+++.+|++.|+|.+++||+|+++|.+-|-+.+......
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-- 449 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-- 449 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--
Confidence 5433211 1125568999999999999999999999876544433322
Q ss_pred CCCcccEEEEEecCHHHHHHHHHhCCCcccCCe-EEEEEeCCC
Q 018875 144 TNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QVEIKKAEP 185 (349)
Q Consensus 144 ~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~-~i~v~~a~~ 185 (349)
+.+.+|++.+++.|+|..|+..++.+.+... -|+|++++.
T Consensus 450 --kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 450 --KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred --CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 1233999999999999999999999888664 889988764
No 65
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.8e-14 Score=111.54 Aligned_cols=87 Identities=18% Similarity=0.369 Sum_probs=80.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
.....-.|||.++.+.+||++|.+.|..||+|++|.+..|+.|+-.||||+|+|++.+.|++||++||+..|.+.+|.|+
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 33455679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 018875 182 KAEPKKS 188 (349)
Q Consensus 182 ~a~~~~~ 188 (349)
|+-.+.+
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9876543
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=5.7e-14 Score=123.09 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
..++|||+|||+.+|+++|+++|+.||.|++|+|+.+.. +++||||+|+++++|+.||. |++..|.++.|+|.++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 357999999999999999999999999999999998864 46799999999999999995 89999999999999987
Q ss_pred CCC
Q 018875 185 PKK 187 (349)
Q Consensus 185 ~~~ 187 (349)
...
T Consensus 79 ~~~ 81 (260)
T PLN03120 79 DYQ 81 (260)
T ss_pred CCC
Confidence 543
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.53 E-value=2.5e-13 Score=124.06 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
+.++|+|.|||+++||+.|++-|.+||.|+.++|+. .+++++ .|.|.++++|++|+..|++..|+++.|+|.+.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 335799999999999999999999999999999954 366666 99999999999999999999999999999863
No 68
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.53 E-value=1.5e-14 Score=129.98 Aligned_cols=168 Identities=15% Similarity=0.250 Sum_probs=126.6
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcC----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCCcEEEE
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKY----GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEI 90 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~----G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~~i~v 90 (349)
.+.-.|.+.+||+++|+.+|.+||.+. +.++.|.++... +++..|-|||.|..+++|+.||.+ .+.+.-+-|++
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 445678889999999999999999643 234566666655 788999999999999999999983 33333333333
Q ss_pred eecCCCCC---------------------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCc-eEE--EEEEe
Q 018875 91 KRTIPKGS---------------------------GQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGK-VLE--HQIIR 140 (349)
Q Consensus 91 ~~~~~~~~---------------------------~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~-v~~--v~i~~ 140 (349)
-+++..+. .........+|.+.+||++++.|+|.++|..|-. |.. |.++.
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 22111000 0011223568999999999999999999998853 333 66666
Q ss_pred cCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCC
Q 018875 141 DHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP 185 (349)
Q Consensus 141 ~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~ 185 (349)
+ ..+++.|.|||+|.++|+|.+|.++.+++.+..+.|+|..+..
T Consensus 318 N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 318 N-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred c-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 6 5689999999999999999999999999989999999987653
No 69
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.1e-13 Score=126.44 Aligned_cols=167 Identities=28% Similarity=0.457 Sum_probs=124.9
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCC--CCCcce---EEEEEeCCHHHHHHHHHccC-------
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRY--TGQPRG---FGFITYADPSVVDKVIEDTH------- 81 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~--~g~~kG---~afVef~~~~~a~~al~~~~------- 81 (349)
...-+++|||+.||++++|++|...|..||.+..-+-.+... .-.++| |+|+.|+++..+.+.|..-.
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 445688999999999999999999999999986544432221 123566 99999999999998876322
Q ss_pred ------ccCCcEEEEeecCCCCC-----CCCCCCCCCeEEEcCCCCCCCHHHHHHHhh-ccCceEEEEEEecCCCCCccc
Q 018875 82 ------IINGKQVEIKRTIPKGS-----GQSKDFKTKKIFVGGIPSSVSEDELKNFFS-KYGKVLEHQIIRDHETNRSRG 149 (349)
Q Consensus 82 ------~~~g~~i~v~~~~~~~~-----~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~-~~G~v~~v~i~~~~~~g~~~G 149 (349)
.+..+.|+|........ ....-.+.+||||+.||--++.++|..+|+ .||.|..+-|-.|.+-.-++|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 22333344433222111 122334778999999999999999999999 799999999999988888999
Q ss_pred EEEEEecCHHHHHHHHHh----CCCcccCCeEEEEE
Q 018875 150 FGFVIFDSEEVVDEMLSK----GNMIDMAGTQVEIK 181 (349)
Q Consensus 150 ~afV~f~~~~~a~~Ai~~----l~~~~~~g~~i~v~ 181 (349)
-+=|+|.+..+-.+||.+ |+..+|+- .|+|+
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~K-RVEIk 449 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDIDK-RVEIK 449 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccce-eeeec
Confidence 999999999999999986 44444443 45553
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=4.4e-14 Score=124.83 Aligned_cols=89 Identities=19% Similarity=0.514 Sum_probs=78.4
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
.++...-.++|+|.|||+..-|.||+.+|.+||.|.+|.||.+ ..-||||.||+|+++++|++|.+++| .|++|+|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 3445556789999999999999999999999999999999997 45789999999999999999999877 8999999
Q ss_pred EEeecCCCCCCCC
Q 018875 89 EIKRTIPKGSGQS 101 (349)
Q Consensus 89 ~v~~~~~~~~~~~ 101 (349)
+|..++++-...+
T Consensus 167 EVn~ATarV~n~K 179 (376)
T KOG0125|consen 167 EVNNATARVHNKK 179 (376)
T ss_pred EEeccchhhccCC
Confidence 9999987644433
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3e-13 Score=121.04 Aligned_cols=172 Identities=15% Similarity=0.265 Sum_probs=134.0
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
+...-++|||..+.++++|+||+..|+.||+|.+|.+.+......+|||.||||.+..+...|+..++ .+.+.-|+|-
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 34567899999999999999999999999999999999999888999999999999999999998555 6778888774
Q ss_pred ecCCCCCCC-----------------------------------------------------------------------
Q 018875 92 RTIPKGSGQ----------------------------------------------------------------------- 100 (349)
Q Consensus 92 ~~~~~~~~~----------------------------------------------------------------------- 100 (349)
.+......-
T Consensus 286 k~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi 365 (544)
T KOG0124|consen 286 KCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVI 365 (544)
T ss_pred cccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCcee
Confidence 432111000
Q ss_pred ---------------------------------------------------------------------------CCCCC
Q 018875 101 ---------------------------------------------------------------------------SKDFK 105 (349)
Q Consensus 101 ---------------------------------------------------------------------------~~~~~ 105 (349)
.....
T Consensus 366 ~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~ 445 (544)
T KOG0124|consen 366 TGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQE 445 (544)
T ss_pred ccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhcccc
Confidence 00002
Q ss_pred CCeEEEcCC--CCCC---CHHHHHHHhhccCceEEEEEEecCCCCCcc----cEEEEEecCHHHHHHHHHhCCCcccCCe
Q 018875 106 TKKIFVGGI--PSSV---SEDELKNFFSKYGKVLEHQIIRDHETNRSR----GFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (349)
Q Consensus 106 ~~~l~V~nL--~~~~---t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~----G~afV~f~~~~~a~~Ai~~l~~~~~~g~ 176 (349)
++.|.+.|+ |.++ -+.+|.+.|.+||.|.+|.|...+.+.... ---||+|....++.+|+++|++..|.++
T Consensus 446 S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr 525 (544)
T KOG0124|consen 446 STVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGR 525 (544)
T ss_pred CcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCc
Confidence 335666775 3333 356788999999999999999887655322 1359999999999999999999999999
Q ss_pred EEEEEeCCC
Q 018875 177 QVEIKKAEP 185 (349)
Q Consensus 177 ~i~v~~a~~ 185 (349)
+|..+.-..
T Consensus 526 ~VvAE~YDQ 534 (544)
T KOG0124|consen 526 KVVAEVYDQ 534 (544)
T ss_pred eeehhhhhh
Confidence 998765543
No 72
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.3e-14 Score=115.13 Aligned_cols=76 Identities=20% Similarity=0.482 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~ 93 (349)
.-.++|||+||+..+++.||+.+|..||+|.+|||...+. |||||||+++.+|+.|+..|+ .|.+..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 4478999999999999999999999999999999999764 899999999999999999655 889999999987
Q ss_pred CCC
Q 018875 94 IPK 96 (349)
Q Consensus 94 ~~~ 96 (349)
.-.
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 654
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=6.9e-14 Score=122.18 Aligned_cols=89 Identities=24% Similarity=0.468 Sum_probs=79.4
Q ss_pred CCCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--cCccC
Q 018875 7 SDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED--THIIN 84 (349)
Q Consensus 7 ~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~--~~~~~ 84 (349)
++.+......+-+||||.-|+.+++|.+|+..|+.||+|+.|.|+.++.|++++|||||+|+++.++.+|.++ ..+|+
T Consensus 90 P~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id 169 (335)
T KOG0113|consen 90 PNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID 169 (335)
T ss_pred CCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec
Confidence 4444555567889999999999999999999999999999999999999999999999999999999999984 44899
Q ss_pred CcEEEEeecCC
Q 018875 85 GKQVEIKRTIP 95 (349)
Q Consensus 85 g~~i~v~~~~~ 95 (349)
++.|.|.....
T Consensus 170 grri~VDvERg 180 (335)
T KOG0113|consen 170 GRRILVDVERG 180 (335)
T ss_pred CcEEEEEeccc
Confidence 99999987643
No 74
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.51 E-value=5.7e-14 Score=127.36 Aligned_cols=158 Identities=14% Similarity=0.162 Sum_probs=120.9
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc----CccCCcEEE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT----HIINGKQVE 89 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~----~~~~g~~i~ 89 (349)
...+++.|.++|||++++|+||.+++.+||.|+.+.+++-++ -|||||+|+++|...+..- ..+.+++|.
T Consensus 24 ~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~y 97 (492)
T KOG1190|consen 24 MAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIY 97 (492)
T ss_pred ccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCccee
Confidence 345899999999999999999999999999999999988764 6999999999999855411 156666666
Q ss_pred EeecCCCCCCC------------------------------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCce
Q 018875 90 IKRTIPKGSGQ------------------------------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKV 133 (349)
Q Consensus 90 v~~~~~~~~~~------------------------------------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v 133 (349)
|+++....-.. .....-..++|.++-+.+|-|.|..+|++||.|
T Consensus 98 iq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~V 177 (492)
T KOG1190|consen 98 IQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFV 177 (492)
T ss_pred ehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhccee
Confidence 65533211100 001122357889999999999999999999999
Q ss_pred EEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 134 LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 134 ~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
.+|........ =.|+|.|.+++.|+.|...|++..|..-.+.++
T Consensus 178 lKIiTF~Knn~----FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLr 221 (492)
T KOG1190|consen 178 LKIITFTKNNG----FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLR 221 (492)
T ss_pred EEEEEEecccc----hhhhhhccchhhHHHHHHhccCCcccCceeEEE
Confidence 88766554221 158999999999999999999999877544443
No 75
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.5e-14 Score=119.62 Aligned_cols=89 Identities=28% Similarity=0.527 Sum_probs=83.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||.+|..+++|..|...|-+||.|+.|.|+.|.++.+.++|+||+|+..|+|.+||..||..+|.++.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 018875 183 AEPKKSSNP 191 (349)
Q Consensus 183 a~~~~~~~~ 191 (349)
|+|.+....
T Consensus 87 AkP~kikeg 95 (298)
T KOG0111|consen 87 AKPEKIKEG 95 (298)
T ss_pred cCCccccCC
Confidence 998765443
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.9e-13 Score=97.84 Aligned_cols=68 Identities=25% Similarity=0.619 Sum_probs=60.3
Q ss_pred EEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 21 lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
|||.|||+++|+++|.++|+.++.|..+.++.+++ +.++++|||+|.++++|++|++..+ .++++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 8999999999999999999999443 78887764
No 77
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=4.1e-13 Score=117.70 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=68.7
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecCCC
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 96 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~~~ 96 (349)
.++|||+|||+++|+++|++||+.||+|++|.|+.+.. +++||||+|+++++|+.||. +...|.++.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998863 46899999999999999997 445899999999997644
No 78
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=8.8e-15 Score=119.01 Aligned_cols=104 Identities=21% Similarity=0.463 Sum_probs=86.7
Q ss_pred ccCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHH
Q 018875 82 IINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVV 161 (349)
Q Consensus 82 ~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a 161 (349)
.++.+.|++-.+.. ......-.++.-|||++||+++||.||..+|++||+|++|.+++|+.|++++||||+.|++..+.
T Consensus 12 ~lne~Elq~g~~~~-~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRST 90 (219)
T KOG0126|consen 12 KLNERELQLGIADK-KSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRST 90 (219)
T ss_pred HhhHHhhccccccc-cchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccce
Confidence 44555555544431 11222334677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 162 DEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 162 ~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
..|+..||+..|.++.|+|+.....
T Consensus 91 ILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 91 ILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred EEEEeccCCceecceeEEeeecccc
Confidence 9999999999999999999876543
No 79
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4.9e-13 Score=109.18 Aligned_cols=79 Identities=22% Similarity=0.509 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
.+++|||.|||.++.+.+|+++|.+|+.|.+|.|... -.+..||||+|+++.+|+.||..-++.++++..|.|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 5689999999999999999999999999999988654 2345699999999999999999999999999999999987
Q ss_pred CC
Q 018875 185 PK 186 (349)
Q Consensus 185 ~~ 186 (349)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 53
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=6.9e-13 Score=94.35 Aligned_cols=72 Identities=35% Similarity=0.701 Sum_probs=67.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
+|+|.|||.++++++|+++|++||.|..+.++.+. +.++++|||+|.+.++|++|++.+++..+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 6678899999999999999999999999999998873
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=3.6e-13 Score=124.79 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCH--HHHHHHHHhCCCcccCCeEEEEEe
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSE--EVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~--~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
...+|||+||++++|+++|+++|.+||.|.+|.|+ +.++ ++||||+|.+. +++++||+.||+.++.++.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 55799999999999999999999999999999999 4556 89999999987 789999999999999999999999
Q ss_pred CCCC
Q 018875 183 AEPK 186 (349)
Q Consensus 183 a~~~ 186 (349)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8863
No 82
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=8.2e-13 Score=97.78 Aligned_cols=82 Identities=16% Similarity=0.350 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
...++.|||.|||+++|.|++.++|.+||.|..|+|-..+. .+|.|||.|++..+|++|++.|++..++++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34567899999999999999999999999999999987765 478999999999999999999999999999999988
Q ss_pred CCCCC
Q 018875 183 AEPKK 187 (349)
Q Consensus 183 a~~~~ 187 (349)
..+.+
T Consensus 92 yq~~~ 96 (124)
T KOG0114|consen 92 YQPED 96 (124)
T ss_pred cCHHH
Confidence 77643
No 83
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=7.8e-13 Score=93.69 Aligned_cols=71 Identities=39% Similarity=0.761 Sum_probs=67.0
Q ss_pred EcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 111 VGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 111 V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
|.|||..+++++|+++|++||.|..+.+..++.+.+++++|||+|.+.++|++|++.|++..+.++.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988888999999999999999999999999999999998873
No 84
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=1e-12 Score=118.70 Aligned_cols=80 Identities=38% Similarity=0.764 Sum_probs=77.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCC
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP 185 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~ 185 (349)
..+|||.|||+.+|+++|.++|.+|+.|..|.|..++.+++++++|||+|.++++|..|++.+++..|.++.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999653
No 85
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=1.3e-12 Score=112.79 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
...+|||.||++.+|+++|+++|+.||+|.+|.|+.+. +.+++|||+|+++++|+.|| .|++..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 34689999999999999999999999999999999884 34579999999999999999 589999999999998876
Q ss_pred CC
Q 018875 185 PK 186 (349)
Q Consensus 185 ~~ 186 (349)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 86
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.41 E-value=3.8e-13 Score=109.68 Aligned_cols=83 Identities=29% Similarity=0.518 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
....||||.||+..++++.|+++|-++|+|.++.|++++.+...+|||||+|.++|+|+-|++.||...|.+++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 36779999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 018875 184 EPK 186 (349)
Q Consensus 184 ~~~ 186 (349)
...
T Consensus 87 s~~ 89 (203)
T KOG0131|consen 87 SAH 89 (203)
T ss_pred ccc
Confidence 843
No 87
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.41 E-value=2e-13 Score=129.20 Aligned_cols=79 Identities=23% Similarity=0.548 Sum_probs=74.7
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecCCC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPK 96 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~~~ 96 (349)
++|||+|||++++|++|.++|+..++|.+++++.|+.+++++||+||+|.++++|++|++.++ ++.+++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999777 899999999887644
Q ss_pred C
Q 018875 97 G 97 (349)
Q Consensus 97 ~ 97 (349)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 88
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.2e-13 Score=111.85 Aligned_cols=89 Identities=21% Similarity=0.444 Sum_probs=81.3
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
.......++|||++|..++||.-|...|-+||.|++|.|+.|..+.++++|+||+|+..|+|.+||.+++ ++.++.|+
T Consensus 4 ~~~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grtir 83 (298)
T KOG0111|consen 4 QQMANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIR 83 (298)
T ss_pred ccccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEE
Confidence 3455678999999999999999999999999999999999999999999999999999999999999877 89999999
Q ss_pred EeecCCCCCCC
Q 018875 90 IKRTIPKGSGQ 100 (349)
Q Consensus 90 v~~~~~~~~~~ 100 (349)
|..+.|.....
T Consensus 84 VN~AkP~kike 94 (298)
T KOG0111|consen 84 VNLAKPEKIKE 94 (298)
T ss_pred EeecCCccccC
Confidence 99998765433
No 89
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=8e-13 Score=102.47 Aligned_cols=90 Identities=22% Similarity=0.433 Sum_probs=79.8
Q ss_pred CCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 9 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
.+-++.+..--.|||.++..++||++|.+.|..||+|+++.|-.|+.|+..||||+|+|++.++|++|++.++ .+.++
T Consensus 63 ~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 63 RPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred CCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 3345555566689999999999999999999999999999999999999999999999999999999999766 88999
Q ss_pred EEEEeecCCCCC
Q 018875 87 QVEIKRTIPKGS 98 (349)
Q Consensus 87 ~i~v~~~~~~~~ 98 (349)
+|.|.|+..+..
T Consensus 143 ~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 143 NVSVDWCFVKGP 154 (170)
T ss_pred ceeEEEEEecCC
Confidence 999999865543
No 90
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=2.5e-12 Score=95.24 Aligned_cols=93 Identities=22% Similarity=0.311 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 1 MGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 1 ~~~~s~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
|+...+......-++...+.|||.|||+++|.|++.++|-+||.|..|+|=..+ ..+|.|||.|++..+|++|++++
T Consensus 1 m~~~~~~~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhl 77 (124)
T KOG0114|consen 1 MAMTGKKKQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHL 77 (124)
T ss_pred CCccccccCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHh
Confidence 555666666667777888999999999999999999999999999998887654 45699999999999999999976
Q ss_pred C--ccCCcEEEEeecCCC
Q 018875 81 H--IINGKQVEIKRTIPK 96 (349)
Q Consensus 81 ~--~~~g~~i~v~~~~~~ 96 (349)
. .+.++.+.|-...+.
T Consensus 78 sg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 78 SGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred cccccCCceEEEEecCHH
Confidence 5 778888888776654
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=7.1e-13 Score=122.88 Aligned_cols=79 Identities=16% Similarity=0.432 Sum_probs=69.4
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHccC--ccCCcEEE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADP--SVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~--~~a~~al~~~~--~~~g~~i~ 89 (349)
......+|||+||++++|+++|...|.+||.|.+|.|++. ++ ||||||+|.+. +++++||+.++ .+.++.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 3455689999999999999999999999999999999954 55 89999999987 68999999665 89999999
Q ss_pred EeecCCC
Q 018875 90 IKRTIPK 96 (349)
Q Consensus 90 v~~~~~~ 96 (349)
|..+.+.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9987653
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.38 E-value=6.9e-13 Score=110.16 Aligned_cols=83 Identities=24% Similarity=0.500 Sum_probs=76.7
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
+.+.+...+|.|-||.+.+|.++|..+|++||.|-+|.|.+|+.|..++|||||.|.+..+|+.|++.+. .|+++.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 5566777899999999999999999999999999999999999999999999999999999999999665 89999999
Q ss_pred EeecC
Q 018875 90 IKRTI 94 (349)
Q Consensus 90 v~~~~ 94 (349)
|+++.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 98764
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.9e-12 Score=123.22 Aligned_cols=165 Identities=19% Similarity=0.418 Sum_probs=133.9
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcC------------CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCc
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKY------------GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THI 82 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~------------G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~ 82 (349)
-..+.++|.+||..++++++..||..- -+|..+.|-..+ .||||+|.+.++|..|+.. ...
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~~~~~~ 246 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMALDGII 246 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhcccchh
Confidence 456789999999999999999999653 125555555544 6999999999999999873 335
Q ss_pred cCCcEEEEeecCCCCC-------------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCC
Q 018875 83 INGKQVEIKRTIPKGS-------------------GQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHE 143 (349)
Q Consensus 83 ~~g~~i~v~~~~~~~~-------------------~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~ 143 (349)
+.+.++.+........ .+.......+++|.+||..+++++++++++.|+++....++.+..
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 6666666543322111 112233556899999999999999999999999999999999999
Q ss_pred CCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 144 TNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 144 ~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
++.+++|||.+|.++.....|++.||+..+.+.+|.|..|-..
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 9999999999999999999999999999999999999877654
No 94
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=6.2e-12 Score=89.87 Aligned_cols=74 Identities=38% Similarity=0.744 Sum_probs=68.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
+|+|.+||..+++++|+++|+.++.|..+.+..+..+ .++++|||+|.+.++|+.|++.++...+.++.|+|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988655 6788999999999999999999999999999999864
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=5.1e-12 Score=109.10 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=67.5
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~~ 95 (349)
...+|||.||++++|+++|++||+.||+|++|.|+++. +.++||||+|+++++|+.|+. +...|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 34799999999999999999999999999999999985 445799999999999999997 55688999999987553
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.36 E-value=7.7e-11 Score=106.08 Aligned_cols=167 Identities=16% Similarity=0.232 Sum_probs=130.5
Q ss_pred CCCCCCCceEEEcCCCcC-CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 12 TGDGASPGKIFIGGLPKD-TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~-~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
+.-..+.+.++|-+|... ++-+.|.++|..||.|+.|++|+.+. +.|.||+.|+.++++|+..++ .+.+.+|
T Consensus 281 p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 281 PGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 345577889999999755 77888999999999999999999874 789999999999999999665 6788888
Q ss_pred EEeecCCCCCCC---------------------------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCc-eE
Q 018875 89 EIKRTIPKGSGQ---------------------------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGK-VL 134 (349)
Q Consensus 89 ~v~~~~~~~~~~---------------------------------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~-v~ 134 (349)
.|..++...... .-..++++|..-|.|..+|||.|.++|..... ..
T Consensus 356 ~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~ 435 (494)
T KOG1456|consen 356 NVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPT 435 (494)
T ss_pred EEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcc
Confidence 887654332111 12236778999999999999999999987643 44
Q ss_pred EEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCe------EEEEEeCCC
Q 018875 135 EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT------QVEIKKAEP 185 (349)
Q Consensus 135 ~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~------~i~v~~a~~ 185 (349)
+|+|..-+ +.++. .+++||++.++|..||.+||...|.+. .|++.++.+
T Consensus 436 svkvFp~k-serSs-sGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 436 SVKVFPLK-SERSS-SGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred eEEeeccc-ccccc-cceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 56666654 34433 679999999999999999999998763 345555544
No 97
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=2e-13 Score=111.11 Aligned_cols=81 Identities=27% Similarity=0.556 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~ 93 (349)
.++--|||++||+++||.+|...|++||+|++|.|++|+.|++++||||+.|+|..+...|+.+++ .|.++.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 456689999999999999999999999999999999999999999999999999999999999777 889999999865
Q ss_pred CCC
Q 018875 94 IPK 96 (349)
Q Consensus 94 ~~~ 96 (349)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 543
No 98
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.34 E-value=1.8e-12 Score=113.06 Aligned_cols=73 Identities=27% Similarity=0.682 Sum_probs=70.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
.+|||+|||..+++.+|+.+|++||.|.+|+|+++ |+||..++.++++.||..|++..|++..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999998 9999999999999999999999999999999998887
Q ss_pred C
Q 018875 187 K 187 (349)
Q Consensus 187 ~ 187 (349)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 4
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=7.6e-12 Score=88.87 Aligned_cols=69 Identities=30% Similarity=0.661 Sum_probs=61.3
Q ss_pred eEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
+|||.|||..+++++|+++|++|++|..+.++.+. +.++++|||+|.+.++|++|++.++ .+.++.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 59999999999999999999999999999999876 6788999999999999999998544 667777765
No 100
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.9e-12 Score=114.42 Aligned_cols=84 Identities=19% Similarity=0.428 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
.++.+.|||..|++-+|+|+|+-+|+.||.|..|.|+++..|+.+..||||+|++.+++++|.-+|++..|+++.|+|++
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 018875 183 AEPK 186 (349)
Q Consensus 183 a~~~ 186 (349)
+.+-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 7754
No 101
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.31 E-value=5.7e-12 Score=114.13 Aligned_cols=172 Identities=20% Similarity=0.323 Sum_probs=139.5
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~ 93 (349)
...+++|++++.+.+.+.++..++.+.+.+..+.+......-.+++++.|.|+..+.+..||+... .+....+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 468899999999999999999999999988888888877778899999999999999999998322 333333333322
Q ss_pred CCCCC------CCCCCCCCCeEE-EcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHH
Q 018875 94 IPKGS------GQSKDFKTKKIF-VGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 94 ~~~~~------~~~~~~~~~~l~-V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 166 (349)
..... .........+++ |.+|++++++++|+.+|..++.|..++++.+..++.+++||+|.|.+...+.+|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 22221 111222334455 99999999999999999999999999999999999999999999999999999998
Q ss_pred hCCCcccCCeEEEEEeCCCCCC
Q 018875 167 KGNMIDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 167 ~l~~~~~~g~~i~v~~a~~~~~ 188 (349)
. +...+..+++.|...++...
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred c-ccCcccCcccccccCCCCcc
Confidence 7 88889999999998887644
No 102
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=5e-13 Score=111.95 Aligned_cols=148 Identities=16% Similarity=0.256 Sum_probs=119.7
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
.++...+||||.||...++|+-|.|+|-+.|+|.+|.|..++ +.+.| ||||+|+++-.+.-|++-++ .+.+.+++|
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 345668899999999999999999999999999999999887 55666 99999999999999998433 555555555
Q ss_pred eecCCCCCCCCCCCCCCeEEEcC----CCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHH
Q 018875 91 KRTIPKGSGQSKDFKTKKIFVGG----IPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~V~n----L~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 166 (349)
+. +.++ |...+++|.+.++|+..+++..+++..+.+ ++.+-+.||++....+...|+.
T Consensus 82 ~~-----------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 82 TL-----------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred cc-----------------ccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhh
Confidence 43 3333 667889999999999999999999998854 7788899999988888888888
Q ss_pred hCCCcccCCeEEEE
Q 018875 167 KGNMIDMAGTQVEI 180 (349)
Q Consensus 167 ~l~~~~~~g~~i~v 180 (349)
.....++.-+++.+
T Consensus 144 ~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 144 LYQGLELFQKKVTI 157 (267)
T ss_pred hhcccCcCCCCccc
Confidence 76666555555444
No 103
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=1.4e-11 Score=87.21 Aligned_cols=68 Identities=26% Similarity=0.651 Sum_probs=61.3
Q ss_pred EcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 23 IGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 23 V~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
|.|||.++++++|+++|++|++|..+.++.++.+.+++++|||+|.+.++|++|++.++ .+.++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 57999999999999999999999999999988778999999999999999999998554 667777765
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.30 E-value=6.6e-12 Score=118.91 Aligned_cols=82 Identities=33% Similarity=0.609 Sum_probs=79.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
.+|||+|||+++++|+|.++|+..+.|..++++.|+++++++||+||+|.+.++|++|++.||..++.+++|+|+++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CC
Q 018875 187 KS 188 (349)
Q Consensus 187 ~~ 188 (349)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.26 E-value=2.4e-11 Score=86.92 Aligned_cols=61 Identities=23% Similarity=0.338 Sum_probs=55.2
Q ss_pred HHHHHHHhh----ccCceEEEE-EEecCCC--CCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 120 EDELKNFFS----KYGKVLEHQ-IIRDHET--NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 120 ~e~l~~~F~----~~G~v~~v~-i~~~~~~--g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
+++|+++|+ +||.|.+|. |+.++.+ +.+++++||+|++.++|++|++.||+..+.++.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7776666 889999999999999999999999999999999986
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.25 E-value=6.1e-11 Score=84.61 Aligned_cols=71 Identities=27% Similarity=0.654 Sum_probs=63.2
Q ss_pred eEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
+|+|.+||+.+++++|+++|+.+++|..+.++.+..+ .++++|||+|.+.++|..|++.++ .++++.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999988744 778999999999999999999555 5678877775
No 107
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.24 E-value=3e-11 Score=82.41 Aligned_cols=56 Identities=32% Similarity=0.532 Sum_probs=51.0
Q ss_pred HHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 123 LKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 123 l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
|.++|++||+|++|.+..++ +++|||+|.+.++|++|++.||+..+.+++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998764 469999999999999999999999999999999985
No 108
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.22 E-value=1e-10 Score=110.32 Aligned_cols=81 Identities=22% Similarity=0.489 Sum_probs=71.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
.+|||.|||.++++++|+++|.+||+|+...|......++..+|+||+|++.++++.||++ +...|.+++|.|+..++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 3699999999999999999999999999988887654455558999999999999999998 688999999999988775
Q ss_pred CC
Q 018875 187 KS 188 (349)
Q Consensus 187 ~~ 188 (349)
..
T Consensus 368 ~~ 369 (419)
T KOG0116|consen 368 FR 369 (419)
T ss_pred cc
Confidence 43
No 109
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=9e-13 Score=129.60 Aligned_cols=148 Identities=17% Similarity=0.278 Sum_probs=129.4
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC-ccCCcEEEEeecCC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEIKRTIP 95 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~-~~~g~~i~v~~~~~ 95 (349)
...++||.||+..+.+++|...|..++.|..+.|....++++.+|+|||+|.+++++.+|+.-.. .+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~----------- 734 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF----------- 734 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-----------
Confidence 45689999999999999999999999998888888667789999999999999999999998321 111
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCC
Q 018875 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (349)
Q Consensus 96 ~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g 175 (349)
....|+|.|+|+..|.++|+.++..++.+..++++.. ..+++++.|+|.|.++.++.+++...+...+..
T Consensus 735 ---------gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 735 ---------GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred ---------hhhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhh
Confidence 1457999999999999999999999999999997776 568999999999999999999999988888888
Q ss_pred eEEEEEeCCC
Q 018875 176 TQVEIKKAEP 185 (349)
Q Consensus 176 ~~i~v~~a~~ 185 (349)
..+.|....+
T Consensus 805 ~~~~v~vsnp 814 (881)
T KOG0128|consen 805 NNGEVQVSNP 814 (881)
T ss_pred cCccccccCC
Confidence 8888877555
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.20 E-value=4.5e-11 Score=107.91 Aligned_cols=170 Identities=15% Similarity=0.215 Sum_probs=125.5
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEe
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIK 91 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~ 91 (349)
....+...|....|||..++++|..||+-.-.+.--+.+.....++-.+.|.|.|.|+|.-+.|++ +.+.+..+.|+|-
T Consensus 55 ~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievY 134 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVY 134 (508)
T ss_pred cccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeee
Confidence 344556678889999999999999999766443333333333356777999999999999999998 6678888889887
Q ss_pred ecCCCCCCC--------CC----CCCCCeEEEcCCCCCCCHHHHHHHhhccC----ceEEEEEEecCCCCCcccEEEEEe
Q 018875 92 RTIPKGSGQ--------SK----DFKTKKIFVGGIPSSVSEDELKNFFSKYG----KVLEHQIIRDHETNRSRGFGFVIF 155 (349)
Q Consensus 92 ~~~~~~~~~--------~~----~~~~~~l~V~nL~~~~t~e~l~~~F~~~G----~v~~v~i~~~~~~g~~~G~afV~f 155 (349)
.+...+-.. .. ....-.|.+.+||+++|+.|+.++|-+-- .++.|.+++. .+++..|-|||.|
T Consensus 135 ka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlf 213 (508)
T KOG1365|consen 135 KATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLF 213 (508)
T ss_pred ccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEe
Confidence 765432211 11 11234577899999999999999996432 3344544443 6789999999999
Q ss_pred cCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 156 DSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 156 ~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
..+++|+.||.+ |...|..+.|++..+.
T Consensus 214 a~ee~aq~aL~k-hrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 214 ACEEDAQFALRK-HRQNIGQRYIELFRST 241 (508)
T ss_pred cCHHHHHHHHHH-HHHHHhHHHHHHHHHh
Confidence 999999999998 7777877777775544
No 111
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.19 E-value=3.9e-11 Score=109.03 Aligned_cols=118 Identities=42% Similarity=0.637 Sum_probs=96.3
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~~ 95 (349)
...+|||+.||.++++++|+++|++|+.|..+.++.|..+.++++|+||+|.+++++++++. ..|.|+++.|+|+.+.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 46699999999999999999999999999999999999999999999999999999999988 67899999999999998
Q ss_pred CCCCCCCCC-CCCeEEEcCCCCCCCHHHHHHHhhccCceE
Q 018875 96 KGSGQSKDF-KTKKIFVGGIPSSVSEDELKNFFSKYGKVL 134 (349)
Q Consensus 96 ~~~~~~~~~-~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~ 134 (349)
+........ ........++....+.-.|..+|+-|+.+.
T Consensus 176 k~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 176 KEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred hhhccccccccccccccccccccccccccchhccccCccc
Confidence 877654322 222233335555555666777777776554
No 112
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.15 E-value=4.1e-11 Score=102.75 Aligned_cols=170 Identities=19% Similarity=0.285 Sum_probs=131.7
Q ss_pred CCCceEEEcCCCcCCcHHH-H--HHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEE
Q 018875 16 ASPGKIFIGGLPKDTTYAT-F--NKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEI 90 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~-l--~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v 90 (349)
.....+++.++-.++..+- | ...|+.+-.+....++++. .+..+.++|+.|...+.-.++..+. .++.-.+|++
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 3444566666655555444 3 5667777777777777776 5666789999999888777766532 2444455666
Q ss_pred eecCCCCCCCC--CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhC
Q 018875 91 KRTIPKGSGQS--KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (349)
Q Consensus 91 ~~~~~~~~~~~--~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 168 (349)
...+..+.... -+..+.+||++.|..+++++.|...|.+|-.....++++++.|+++++|.||.|.+.+++..|+..|
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 65555554443 3345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCeEEEEEeCCCC
Q 018875 169 NMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 169 ~~~~~~g~~i~v~~a~~~ 186 (349)
++.-+..++|++..+.-+
T Consensus 253 ~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred cccccccchhHhhhhhHH
Confidence 999999999998765543
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.13 E-value=1.2e-10 Score=113.66 Aligned_cols=111 Identities=22% Similarity=0.409 Sum_probs=89.9
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~ 89 (349)
.....-++||||+.|+..++|++|.++|+.||+|++|+++..+ ++|||.+...++|++||.++ +.+..+.|+
T Consensus 415 d~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Ik 488 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIK 488 (894)
T ss_pred cceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeE
Confidence 3344567899999999999999999999999999999999876 79999999999999999955 488899999
Q ss_pred EeecCCCCCCC-CCCCCCCeEEEcCCCCCCCHHHHHHHhh
Q 018875 90 IKRTIPKGSGQ-SKDFKTKKIFVGGIPSSVSEDELKNFFS 128 (349)
Q Consensus 90 v~~~~~~~~~~-~~~~~~~~l~V~nL~~~~t~e~l~~~F~ 128 (349)
|.|+..+.... -++.....|=|.-|||+.-.++|+.+++
T Consensus 489 i~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 489 IAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred EeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 99998776544 1233344556777888766666777766
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.3e-10 Score=103.94 Aligned_cols=89 Identities=18% Similarity=0.371 Sum_probs=79.3
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCC
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIING 85 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g 85 (349)
+-+...-..+.++|||-.|.+-+|+++|+-+|+.||.|.+|.|+++..|+.+..||||||++.+++++|.-++ ..|+.
T Consensus 229 DlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 229 DLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred CCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc
Confidence 4455566678899999999999999999999999999999999999999999999999999999999998744 38899
Q ss_pred cEEEEeecCCC
Q 018875 86 KQVEIKRTIPK 96 (349)
Q Consensus 86 ~~i~v~~~~~~ 96 (349)
+.|.|.++.+.
T Consensus 309 rRIHVDFSQSV 319 (479)
T KOG0415|consen 309 RRIHVDFSQSV 319 (479)
T ss_pred ceEEeehhhhh
Confidence 99999887643
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=8e-11 Score=116.57 Aligned_cols=163 Identities=14% Similarity=0.271 Sum_probs=132.2
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
.++...+.|||++||+.++++.+|+..|..+|.|.+|.|.... .+.-.-|+||.|.+.+.+-.|+.++. .|..-.++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 4455788999999999999999999999999999999887764 34444689999999998888776332 33333444
Q ss_pred EeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC
Q 018875 90 IKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (349)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 169 (349)
+....+ +...++.|+|..|..++....|..+|..||.|..|++-.... ||+|.|++...++.|++.|.
T Consensus 445 ~glG~~------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~------yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 445 IGLGQP------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP------YAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred cccccc------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc------ceeeecccCccchhhHHHHh
Confidence 444332 344778999999999999999999999999999988866543 99999999999999999999
Q ss_pred CcccCC--eEEEEEeCCCCC
Q 018875 170 MIDMAG--TQVEIKKAEPKK 187 (349)
Q Consensus 170 ~~~~~g--~~i~v~~a~~~~ 187 (349)
...|.+ +.|.|.++.+..
T Consensus 513 gap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 513 GAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred cCcCCCCCcccccccccCCC
Confidence 988865 568888887643
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=99.06 E-value=6.8e-10 Score=79.35 Aligned_cols=59 Identities=22% Similarity=0.429 Sum_probs=50.6
Q ss_pred HHHHHHHHh----cCCCeeEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 32 YATFNKHFG----KYGDITDSV-IMKDRYT--GQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 32 e~~l~~~F~----~~G~i~~~~-i~~~~~~--g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
+++|+++|+ +||.|.++. |+.++.+ ++++||+||+|.+.++|.+|+++++ .+.++.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999996 6666655 8899999999999999999999665 788888765
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.04 E-value=4.9e-10 Score=109.44 Aligned_cols=76 Identities=28% Similarity=0.521 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
.++||||+.|+.+++|+||..+|++||+|..|.++.. ++||||++....+|++||++|++..+..+.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 5679999999999999999999999999999999876 5699999999999999999999999999999999987
Q ss_pred CC
Q 018875 185 PK 186 (349)
Q Consensus 185 ~~ 186 (349)
.+
T Consensus 494 g~ 495 (894)
T KOG0132|consen 494 GK 495 (894)
T ss_pred cC
Confidence 54
No 118
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=99.03 E-value=3.5e-08 Score=89.24 Aligned_cols=86 Identities=24% Similarity=0.387 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceE--------EEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL--------EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~--------~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~ 174 (349)
.....+|||..||..+++++|.++|.+|+.|+ .|+|.++++|.++|+-|.|+|+++.+|++||+.++...+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44667999999999999999999999999887 4789999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCC
Q 018875 175 GTQVEIKKAEPKKS 188 (349)
Q Consensus 175 g~~i~v~~a~~~~~ 188 (349)
+.+|+|.+|+.+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999987653
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1e-09 Score=98.21 Aligned_cols=81 Identities=27% Similarity=0.561 Sum_probs=72.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh-CCCcccCCeEE
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK-GNMIDMAGTQV 178 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~-l~~~~~~g~~i 178 (349)
+.++...++|||.+|...++|.+|+++|.+||+|..|.++..+ ++|||+|.+.++|++|.++ ++...|++..|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3455567899999999999999999999999999999998874 3999999999999999887 77778999999
Q ss_pred EEEeCCCC
Q 018875 179 EIKKAEPK 186 (349)
Q Consensus 179 ~v~~a~~~ 186 (349)
+|.|.++.
T Consensus 296 ~i~Wg~~~ 303 (377)
T KOG0153|consen 296 KIKWGRPK 303 (377)
T ss_pred EEEeCCCc
Confidence 99999983
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.2e-09 Score=97.82 Aligned_cols=81 Identities=28% Similarity=0.531 Sum_probs=72.1
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc---CccCCc
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT---HIINGK 86 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~---~~~~g~ 86 (349)
-.+.++....+|||++|-..++|++|+++|.+||+|.++.++..+ ++|||+|.+.+.|+.|.++. ..|++.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 345567788999999999899999999999999999999999976 59999999999999999833 388999
Q ss_pred EEEEeecCCC
Q 018875 87 QVEIKRTIPK 96 (349)
Q Consensus 87 ~i~v~~~~~~ 96 (349)
.|.|.|..++
T Consensus 294 Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 294 RLKIKWGRPK 303 (377)
T ss_pred EEEEEeCCCc
Confidence 9999998873
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.00 E-value=1.5e-09 Score=90.70 Aligned_cols=84 Identities=27% Similarity=0.443 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc-CceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKY-GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~-G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
......++|..+|.-+.+.+|...|.+| |.|..+++.+++.|+.+++||||+|++++.|+-|.+.||+..|.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456689999999999999999999998 888889999999999999999999999999999999999999999999998
Q ss_pred eCCCC
Q 018875 182 KAEPK 186 (349)
Q Consensus 182 ~a~~~ 186 (349)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87765
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.97 E-value=3e-09 Score=102.72 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
.|.|.|+|++++-+||.++|..|-.+-.-.+++..+.+++.|.|.|.|++.++|.+|...|+++.|..++|.|.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 589999999999999999999997776655556568899999999999999999999999999999999999875
No 123
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.96 E-value=2.1e-09 Score=73.20 Aligned_cols=54 Identities=30% Similarity=0.625 Sum_probs=46.9
Q ss_pred HHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeec
Q 018875 35 FNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRT 93 (349)
Q Consensus 35 l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~ 93 (349)
|.++|++||+|+++.+..+. +++|||+|.+.++|++|++.++ .+.+++|.|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998865 4799999999999999999554 899999999875
No 124
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.96 E-value=3e-09 Score=93.16 Aligned_cols=86 Identities=22% Similarity=0.397 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
+....+|.|.|||+.|+++||+++|++|+.++.+.|..+ ..+.+.+.|-|.|+..++|++|++++++..++++.+++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 335578999999999999999999999998988888887 6788999999999999999999999999999999999988
Q ss_pred CCCCCCC
Q 018875 183 AEPKKSS 189 (349)
Q Consensus 183 a~~~~~~ 189 (349)
..+....
T Consensus 159 i~~~~~~ 165 (243)
T KOG0533|consen 159 ISSPSQS 165 (243)
T ss_pred ecCcccc
Confidence 8765543
No 125
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.95 E-value=2.4e-09 Score=91.01 Aligned_cols=82 Identities=24% Similarity=0.486 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 105 KTKKIFVGGIPSSVSEDELKN----FFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~----~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
+..||||.||++.+..++|++ +|++||.|.+|...+ +.+.+|.|||.|.+.+.|-.|+.+|++..+.+++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999988 999999999988875 4668999999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 018875 181 KKAEPKKSS 189 (349)
Q Consensus 181 ~~a~~~~~~ 189 (349)
.+|+.+...
T Consensus 85 qyA~s~sdi 93 (221)
T KOG4206|consen 85 QYAKSDSDI 93 (221)
T ss_pred ecccCccch
Confidence 999876543
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.94 E-value=1.1e-08 Score=85.72 Aligned_cols=83 Identities=16% Similarity=0.396 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKY-GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~-G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
.......++|..||.-+.+.+|..+|.++ +.|..+++.+++.|+.+++||||+|++++.|+-|.+.++ .+.++-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456678999999999999999999998 778888888999999999999999999999999999666 677888888
Q ss_pred eecCCC
Q 018875 91 KRTIPK 96 (349)
Q Consensus 91 ~~~~~~ 96 (349)
....+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 776554
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.93 E-value=2.9e-09 Score=100.70 Aligned_cols=80 Identities=25% Similarity=0.556 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCC
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP 185 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~ 185 (349)
.+.|||.+|+..+...+|+.+|++||.|+-++|+.+..+.-.++|+||++.+.++|.+||+.|+.++|.++.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 35799999999999999999999999999999999998888899999999999999999999999999999999988764
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.91 E-value=1.5e-10 Score=105.80 Aligned_cols=155 Identities=21% Similarity=0.411 Sum_probs=126.0
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC---ccCCcEEEEeecC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKY-GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH---IINGKQVEIKRTI 94 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~-G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~---~~~g~~i~v~~~~ 94 (349)
+.||++||.+.++..+|+.+|... -+...-.|+.. +||||.+.+..+|.+|++.+. .+.++.+++..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 479999999999999999999664 22333444443 799999999999999999554 8899999998887
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEe-cCCCCCcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 95 PKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIR-DHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 95 ~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~-~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
++.. .++++-|.|+|....||.|..++.+|+.|+.|..+. +.++ -..-|+|.+.+.++.||.+|++..+
T Consensus 75 ~kkq------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 75 PKKQ------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred hHHH------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHh
Confidence 6544 456699999999999999999999999999886543 2221 1335789999999999999999999
Q ss_pred CCeEEEEEeCCCCCCCC
Q 018875 174 AGTQVEIKKAEPKKSSN 190 (349)
Q Consensus 174 ~g~~i~v~~a~~~~~~~ 190 (349)
....++|.+-..+....
T Consensus 145 en~~~k~~YiPdeq~~q 161 (584)
T KOG2193|consen 145 ENQHLKVGYIPDEQNAQ 161 (584)
T ss_pred hhhhhhcccCchhhhhc
Confidence 99999999887665444
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.86 E-value=6.5e-09 Score=100.50 Aligned_cols=170 Identities=10% Similarity=-0.003 Sum_probs=125.0
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC-ccCCcEEEEe
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEIK 91 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~-~~~g~~i~v~ 91 (349)
+-..+.+.|-+..+++++++.++++||... .|..+.|..+.......|-++|+|....++.+|++... .+-.+.++|.
T Consensus 306 qvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~ 384 (944)
T KOG4307|consen 306 QVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTG 384 (944)
T ss_pred cccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeec
Confidence 344667788889999999999999999653 34455555554333336889999999999999999443 4555666654
Q ss_pred ecCCCCCC-----------------------------------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEE
Q 018875 92 RTIPKGSG-----------------------------------QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH 136 (349)
Q Consensus 92 ~~~~~~~~-----------------------------------~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v 136 (349)
........ ........+|||..||..+++.++.++|...-.|++.
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~ 464 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF 464 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhe
Confidence 32211100 0011133579999999999999999999998888885
Q ss_pred EEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 137 QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 137 ~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
..+....+++.+..|||+|..++++.+|+..-+++.+..+.|+|.-.
T Consensus 465 I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 465 IELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 44455577888889999999999999998877888888888888543
No 130
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=4.3e-09 Score=91.01 Aligned_cols=84 Identities=26% Similarity=0.501 Sum_probs=73.9
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
.-.+-|.|||=.||.+..+.||...|-.||.|++.++..|+.|+.+|.|.||.|.++.+|++||..++ .|.=+.|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 44678999999999999999999999999999999999999999999999999999999999999766 5555667776
Q ss_pred ecCCCC
Q 018875 92 RTIPKG 97 (349)
Q Consensus 92 ~~~~~~ 97 (349)
...++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 655554
No 131
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.83 E-value=6.5e-09 Score=91.28 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=80.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
.+..+.+.+||+|+.+.+|.++|+.+|+.|+.|..|.|+.++..+.+++|+||+|.+.+.+++|++ |+..+|.++.|+|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 456688899999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred EeCCCC
Q 018875 181 KKAEPK 186 (349)
Q Consensus 181 ~~a~~~ 186 (349)
.+.+.+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 988766
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.75 E-value=3.4e-08 Score=93.64 Aligned_cols=80 Identities=20% Similarity=0.472 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~ 93 (349)
...+.|||.+|+..+-..+|+++|++||.|+-.+|+.+..+.-.+.|.||++.+.++|.+||+++| .|+++.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 446789999999999999999999999999999999998888889999999999999999999887 899999999876
Q ss_pred CC
Q 018875 94 IP 95 (349)
Q Consensus 94 ~~ 95 (349)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 53
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.74 E-value=3.1e-08 Score=93.63 Aligned_cols=79 Identities=27% Similarity=0.504 Sum_probs=67.3
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~~ 95 (349)
...+|||.|||.++++++|+++|+.||+|+...|.......+...|+||+|++.++++.||+ +...+.+++|.|+....
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 44569999999999999999999999999998887765344445899999999999999999 55588899999987654
No 134
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.72 E-value=6e-08 Score=87.00 Aligned_cols=81 Identities=19% Similarity=0.393 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEE--------EEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCC
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE--------HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~--------v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g 175 (349)
..++.|||++||.++|.+++.++|++||.|.. |.|.++. .++.+|-|+|.|.-.++++.||+.|+..+|.+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 35567999999999999999999999998874 7888884 49999999999999999999999999999999
Q ss_pred eEEEEEeCCC
Q 018875 176 TQVEIKKAEP 185 (349)
Q Consensus 176 ~~i~v~~a~~ 185 (349)
+.|+|+.|+-
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999998864
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.70 E-value=7.4e-08 Score=84.47 Aligned_cols=84 Identities=14% Similarity=0.368 Sum_probs=73.4
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
.+..+.+|+|.|||..|++++|+++|.+|++++.+.|..++ .+++.|.|-|.|+..++|++|++.++ .++++.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 44556789999999999999999999999999999888887 89999999999999999999999544 8899998888
Q ss_pred ecCCCCC
Q 018875 92 RTIPKGS 98 (349)
Q Consensus 92 ~~~~~~~ 98 (349)
...+...
T Consensus 158 ~i~~~~~ 164 (243)
T KOG0533|consen 158 IISSPSQ 164 (243)
T ss_pred EecCccc
Confidence 7665433
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=8.2e-09 Score=86.92 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
..+||||.||...++||.|.++|-+.|+|.+|.|+.++. .+.| ||||+|+++-.+.-|++.+|+..+.+..|+|.+..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 578999999999999999999999999999999998865 4455 99999999999999999999999999988886543
No 137
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.68 E-value=1.7e-07 Score=79.29 Aligned_cols=85 Identities=18% Similarity=0.350 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEE-ecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC---CeEEEE
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII-RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA---GTQVEI 180 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~-~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~---g~~i~v 180 (349)
..+||||.+||.++...+|..+|..|--.+.+.|. .++....++-+|||+|.+..+|++|+++||+..|+ ...|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 47899999999999999999999998655554443 33333445669999999999999999999999986 678999
Q ss_pred EeCCCCCCC
Q 018875 181 KKAEPKKSS 189 (349)
Q Consensus 181 ~~a~~~~~~ 189 (349)
++++...+.
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 998876543
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=3.9e-08 Score=93.40 Aligned_cols=160 Identities=17% Similarity=0.245 Sum_probs=105.1
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
....+..+|+|-|||.+|++++|+.+|+.||+|..|+..+.+ ++.+||+|-|..+|++|++.++ ++.++.|+.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 345678899999999999999999999999999986655543 4899999999999999999665 666766662
Q ss_pred eecCCCCC------------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEE
Q 018875 91 KRTIPKGS------------------GQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGF 152 (349)
Q Consensus 91 ~~~~~~~~------------------~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~af 152 (349)
........ ........-++++- |++..+...++..+.-++.++. +... ...-.-|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~-----~~~hq~~ 217 (549)
T KOG4660|consen 145 PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETP-----LLNHQRF 217 (549)
T ss_pred CCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cccc-----chhhhhh
Confidence 11111100 00111122344444 8888888666677776776654 2111 1111567
Q ss_pred EEecCHHHHHHHHHhCCCcccCCeEEEEEeCCC
Q 018875 153 VIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP 185 (349)
Q Consensus 153 V~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~ 185 (349)
++|.+..++..++... +..+.+....+.++.+
T Consensus 218 ~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 218 VEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 8888888885555533 5555555555555444
No 139
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=5.7e-08 Score=83.37 Aligned_cols=73 Identities=23% Similarity=0.580 Sum_probs=67.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
..|||.+||+.+.+++|+++|..|+.|.+|.+... |+||+|+++.+|..|+..|+..+|.+..+.|++++.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g--------f~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG--------FGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc--------cceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 46899999999999999999999999999998765 9999999999999999999999999999999988865
Q ss_pred C
Q 018875 187 K 187 (349)
Q Consensus 187 ~ 187 (349)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 3
No 140
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.58 E-value=1.9e-08 Score=91.33 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=110.5
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEee
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT---GQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKR 92 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~---g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~ 92 (349)
....|-|.||.+.+|.+++..+|..+|.|.++.|+..... ....-.|||.|.|...+..|.. ....|-++.|.|..
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 3458999999999999999999999999999999885422 3445689999999998887765 33455566665543
Q ss_pred cCCCCCCC-------------------------------C----------CC-----------CCCCeEEEcCCCCCCCH
Q 018875 93 TIPKGSGQ-------------------------------S----------KD-----------FKTKKIFVGGIPSSVSE 120 (349)
Q Consensus 93 ~~~~~~~~-------------------------------~----------~~-----------~~~~~l~V~nL~~~~t~ 120 (349)
........ . .. .-.++|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 22110000 0 00 01146899999999999
Q ss_pred HHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC
Q 018875 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (349)
Q Consensus 121 e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~ 174 (349)
.++.+.|+.+|+|....+..... .-+|.|+|........|++. ++.++.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 99999999999998776654322 22778999999888888875 554444
No 141
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.57 E-value=9.7e-08 Score=87.91 Aligned_cols=93 Identities=15% Similarity=0.224 Sum_probs=72.5
Q ss_pred EEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEec---CCCC--C--------cccEEEEEe
Q 018875 89 EIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRD---HETN--R--------SRGFGFVIF 155 (349)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~---~~~g--~--------~~G~afV~f 155 (349)
+|++..+-.....++.+.++|.+.|||.+-.-|.|.++|..||.|+.|+|++. .++. . .+-+|+|+|
T Consensus 214 KVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEy 293 (484)
T KOG1855|consen 214 KVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEY 293 (484)
T ss_pred eeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhh
Confidence 34445555555667789999999999999999999999999999999999987 2221 1 145799999
Q ss_pred cCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 156 DSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 156 ~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
++.+.|.+|.+.|+....+-.-|+|.
T Consensus 294 e~~~~A~KA~e~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 294 EEVEAARKARELLNPEQNWRMGLKVK 319 (484)
T ss_pred hhhHHHHHHHHhhchhhhhhhcchhh
Confidence 99999999999987666554444443
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.55 E-value=5.3e-07 Score=67.91 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=69.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc--CceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC----CeEEEE
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKY--GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA----GTQVEI 180 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~--G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~----g~~i~v 180 (349)
+||.|.|||...|.++|.+++.+. +...-+.++.|..+....|||||.|.++++|.+-.+.+++..+. .+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988764 66777889999999999999999999999999999999988765 567788
Q ss_pred EeCCCC
Q 018875 181 KKAEPK 186 (349)
Q Consensus 181 ~~a~~~ 186 (349)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 877643
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=5.5e-08 Score=92.42 Aligned_cols=78 Identities=28% Similarity=0.430 Sum_probs=68.8
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCe
Q 018875 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (349)
Q Consensus 97 ~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~ 176 (349)
.....++....+|+|-|||.+|++++|+++|+.||+|..|+.-.. .++.+||+|-|..+|++|+++|+..+|.++
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 334455778899999999999999999999999999999765544 466999999999999999999999999999
Q ss_pred EEE
Q 018875 177 QVE 179 (349)
Q Consensus 177 ~i~ 179 (349)
.|+
T Consensus 141 ~~k 143 (549)
T KOG4660|consen 141 RIK 143 (549)
T ss_pred hhc
Confidence 888
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.51 E-value=1.5e-07 Score=82.76 Aligned_cols=83 Identities=20% Similarity=0.476 Sum_probs=74.4
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v 90 (349)
...+.+.+.|||+|+...+|.++|..+|+.|+.|..+.|+.++.++++++||||+|.+.+.++.+++ +...|.++++.|
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 3566788999999999999999999999999999999999999888899999999999999999999 555888888888
Q ss_pred eecC
Q 018875 91 KRTI 94 (349)
Q Consensus 91 ~~~~ 94 (349)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 7654
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.50 E-value=9.4e-07 Score=66.55 Aligned_cols=61 Identities=13% Similarity=0.234 Sum_probs=53.5
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKY--GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~--G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
+||+|.|||...|.++|.+++... +...-+-++.|..+..+.|||||.|.+++.|.+..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHH
Confidence 689999999999999999999654 5566677888888889999999999999999998884
No 146
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.44 E-value=2.6e-07 Score=79.76 Aligned_cols=82 Identities=17% Similarity=0.502 Sum_probs=72.4
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
.-+.++.+||++.|..+++++.|...|++|-.....++++++.|++++||.||.|.+++++..|+.+++ .+..+.|.+
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 345678899999999999999999999999999999999999999999999999999999999999655 677777776
Q ss_pred eecC
Q 018875 91 KRTI 94 (349)
Q Consensus 91 ~~~~ 94 (349)
..+.
T Consensus 265 RkS~ 268 (290)
T KOG0226|consen 265 RKSE 268 (290)
T ss_pred hhhh
Confidence 6544
No 147
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.37 E-value=5.3e-07 Score=81.71 Aligned_cols=89 Identities=22% Similarity=0.342 Sum_probs=74.6
Q ss_pred CCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDIT--------DSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 9 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~--------~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
.....+.....+|||-.||..+++++|.++|.+|+.|. .|+|-+++.|.+.|+-|.|.|+|+..|++||+..
T Consensus 57 ~~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ 136 (351)
T KOG1995|consen 57 ASSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWF 136 (351)
T ss_pred cCccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhh
Confidence 34445567778999999999999999999999998875 4778888889999999999999999999999944
Q ss_pred --CccCCcEEEEeecCCCC
Q 018875 81 --HIINGKQVEIKRTIPKG 97 (349)
Q Consensus 81 --~~~~g~~i~v~~~~~~~ 97 (349)
..+.+.+|+|..+....
T Consensus 137 agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 137 AGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred ccccccCCCchhhhhhhcc
Confidence 47888888887765543
No 148
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=3.6e-08 Score=97.73 Aligned_cols=158 Identities=13% Similarity=0.125 Sum_probs=118.2
Q ss_pred CCceEEEcCCCcCCcHH-HHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecC
Q 018875 17 SPGKIFIGGLPKDTTYA-TFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTI 94 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~-~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~ 94 (349)
....+.+.++.+...+. .++..|..++.|+.|.+......-...-+.+++++...+++.|.. ....+..+.+.|..+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCC
Confidence 34456677776555444 677888999999999998843222222388999999999999887 3335666666666655
Q ss_pred CCCCCCCCC------CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhC
Q 018875 95 PKGSGQSKD------FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (349)
Q Consensus 95 ~~~~~~~~~------~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 168 (349)
+........ .+..++||+||+..+.+++|...|..++.+..+.|.-+.+.++.+|.|+|+|.+++.+.+||...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 544322211 23357999999999999999999999999988888777788999999999999999999999865
Q ss_pred CCcccC
Q 018875 169 NMIDMA 174 (349)
Q Consensus 169 ~~~~~~ 174 (349)
..+.+.
T Consensus 730 d~~~~g 735 (881)
T KOG0128|consen 730 DSCFFG 735 (881)
T ss_pred hhhhhh
Confidence 555444
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.32 E-value=8.3e-07 Score=68.36 Aligned_cols=70 Identities=23% Similarity=0.394 Sum_probs=45.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCc-----ccCCeEEEEE
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI-----DMAGTQVEIK 181 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~-----~~~g~~i~v~ 181 (349)
..|+|.+++..++.++|+++|++|+.|..|.+..... .|+|.|.++++|++|++++... .|.+..++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 3688999999999999999999999999999987643 8999999999999999975443 5666666655
Q ss_pred e
Q 018875 182 K 182 (349)
Q Consensus 182 ~ 182 (349)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.31 E-value=1.3e-06 Score=85.25 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecC---CCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDH---ETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~---~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
++.++.|||.||++.++++.|...|..||+|..|+|+-.+ +..+.+-|+||.|.+..+|++|++.|++..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 5577889999999999999999999999999999998654 3345566999999999999999999999999999999
Q ss_pred EEeCCCCC
Q 018875 180 IKKAEPKK 187 (349)
Q Consensus 180 v~~a~~~~ 187 (349)
+.|.++-.
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99986543
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.20 E-value=5.4e-06 Score=80.98 Aligned_cols=80 Identities=15% Similarity=0.393 Sum_probs=68.1
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT---GQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~---g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
+...+.|||+||++.++++.|...|-.||+|.+++||..+.. .+.+-++||.|-+..+|++|++.++ .+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 456778999999999999999999999999999999987632 3456689999999999999999766 66777777
Q ss_pred EeecC
Q 018875 90 IKRTI 94 (349)
Q Consensus 90 v~~~~ 94 (349)
+-|..
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 77764
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.19 E-value=5.6e-06 Score=59.54 Aligned_cols=73 Identities=16% Similarity=0.333 Sum_probs=48.0
Q ss_pred CeEEEcCCCCCCCHHHHH----HHhhccC-ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 107 KKIFVGGIPSSVSEDELK----NFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~----~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
..|+|.|||.+.+...|+ ++++.|| .|..|. .+.|+|.|.+++.|++|++.|++..+.+.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999999877764 5666774 565542 1389999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 018875 182 KAEPKKSS 189 (349)
Q Consensus 182 ~a~~~~~~ 189 (349)
+.......
T Consensus 73 ~~~~~r~~ 80 (90)
T PF11608_consen 73 FSPKNREF 80 (90)
T ss_dssp SS--S---
T ss_pred EcCCcccc
Confidence 98655443
No 153
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.05 E-value=3.5e-06 Score=75.85 Aligned_cols=78 Identities=12% Similarity=0.306 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYG--KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G--~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
...++||+||-|++|++||.+.+...| .+.++++..++.++.+||||+|...+..++++.++.|..++|.++.-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 456899999999999999999888765 577888999999999999999999999999999999999999998666643
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.88 E-value=2.8e-05 Score=51.92 Aligned_cols=52 Identities=19% Similarity=0.486 Sum_probs=42.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHH
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai 165 (349)
+.|.|.+.+.+..+..|+ +|.+||+|.++.+....+ ..+|+|++..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 568888988777755555 888999999998873322 8999999999999985
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.78 E-value=7.8e-05 Score=67.05 Aligned_cols=87 Identities=16% Similarity=0.378 Sum_probs=68.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHH------HHHhhccCceEEEEEEecCCCCCc-ccEE--EEEecCHHHHHHHHHhCCC
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDEL------KNFFSKYGKVLEHQIIRDHETNRS-RGFG--FVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l------~~~F~~~G~v~~v~i~~~~~~g~~-~G~a--fV~f~~~~~a~~Ai~~l~~ 170 (349)
.....+..-+||-.||+.+..|++ .++|.+||.|..|.|-+...+..+ ...+ ||+|.+.|+|.+||++.++
T Consensus 108 niRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg 187 (480)
T COG5175 108 NIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG 187 (480)
T ss_pred cceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcc
Confidence 334456677999999998877762 478999999999988766532222 2223 9999999999999999999
Q ss_pred cccCCeEEEEEeCCCC
Q 018875 171 IDMAGTQVEIKKAEPK 186 (349)
Q Consensus 171 ~~~~g~~i~v~~a~~~ 186 (349)
..++++.|+..+-..+
T Consensus 188 s~~DGr~lkatYGTTK 203 (480)
T COG5175 188 SLLDGRVLKATYGTTK 203 (480)
T ss_pred ccccCceEeeecCchH
Confidence 9999999999876643
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.78 E-value=5.7e-05 Score=50.45 Aligned_cols=53 Identities=21% Similarity=0.461 Sum_probs=43.6
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI 77 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al 77 (349)
++.|-|.+++.+..+ +|+.+|++||+|.++.+.... -+++|.|++..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 357889999987665 567799999999998887433 48999999999999985
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.76 E-value=2.8e-05 Score=59.88 Aligned_cols=57 Identities=16% Similarity=0.386 Sum_probs=38.0
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH 81 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~ 81 (349)
+.|+|.+++.+++.++|+++|++|++|.-|.+.+.. -.|+|.|.++++|++|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHH
Confidence 468999999999999999999999999988888765 379999999999999998544
No 158
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.64 E-value=6.3e-05 Score=68.45 Aligned_cols=82 Identities=22% Similarity=0.473 Sum_probs=71.7
Q ss_pred CCceEE-EcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecC
Q 018875 17 SPGKIF-IGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTI 94 (349)
Q Consensus 17 ~~~~lf-V~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~ 94 (349)
...++| |.+|+.++++++|.++|..++.|..+++..+..++.+++||+|+|.+...+..++. ..+.+.++++.+....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 344555 99999999999999999999999999999999999999999999999999999998 4557888888888776
Q ss_pred CCCC
Q 018875 95 PKGS 98 (349)
Q Consensus 95 ~~~~ 98 (349)
+...
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 5533
No 159
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.56 E-value=0.00027 Score=51.00 Aligned_cols=67 Identities=7% Similarity=0.307 Sum_probs=43.6
Q ss_pred ceEEEcCCCcCCcHHHHHHHHh----cCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 19 GKIFIGGLPKDTTYATFNKHFG----KYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~----~~G-~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
..|+|.|||.+.+...|+.-++ .|| .|.+| .. +.|.|.|.+++.|++|++.+. .+.++.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~~--------~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--SG--------GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----T--------T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--eC--------CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4799999999988887666554 564 45544 21 469999999999999999544 7889999998
Q ss_pred ecCC
Q 018875 92 RTIP 95 (349)
Q Consensus 92 ~~~~ 95 (349)
....
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8743
No 160
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.56 E-value=3.3e-05 Score=69.64 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=61.6
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEe
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYG--DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIK 91 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G--~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~ 91 (349)
....+||+||-|-+|+++|.+.+...| .|.++++..++..+.+||||+|...++..+++.++-+ ..|+++.-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 345799999999999999999997765 4778888899889999999999999999999988833 36666654443
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.49 E-value=0.00012 Score=67.90 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=57.3
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeec---CCCC--C--------cceEEEEEeCCHHHHHHHHHcc
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKD---RYTG--Q--------PRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~---~~~g--~--------~kG~afVef~~~~~a~~al~~~ 80 (349)
.+.++++|.+-|||.+-..|.|.++|..+|.|+.|+|+.. ..+. . .+-+|+|||+..+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3468999999999999999999999999999999999987 2221 1 2457999999999999999855
Q ss_pred C
Q 018875 81 H 81 (349)
Q Consensus 81 ~ 81 (349)
+
T Consensus 307 ~ 307 (484)
T KOG1855|consen 307 N 307 (484)
T ss_pred c
Confidence 4
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.47 E-value=0.00028 Score=61.43 Aligned_cols=89 Identities=15% Similarity=0.284 Sum_probs=72.4
Q ss_pred ccCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHH
Q 018875 82 IINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVV 161 (349)
Q Consensus 82 ~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a 161 (349)
...++.++|.++. + ..|+|.||+.-++.|.|.+.|+.|++|+...++.| ..++..+-.+|+|...-.|
T Consensus 18 ~~~~~~lr~rfa~----------~-a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a 85 (275)
T KOG0115|consen 18 FPKGRSLRVRFAM----------H-AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNA 85 (275)
T ss_pred CCCCCceEEEeec----------c-ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhH
Confidence 5778999999986 3 68999999999999999999999999998887777 5577777899999999999
Q ss_pred HHHHHhCCCcc----cCCeEEEEEe
Q 018875 162 DEMLSKGNMID----MAGTQVEIKK 182 (349)
Q Consensus 162 ~~Ai~~l~~~~----~~g~~i~v~~ 182 (349)
.+|+..++..- ...+++-|..
T Consensus 86 ~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 86 RKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred HHHHHHhccCccccCCCCCccCCCh
Confidence 99998764333 3344444443
No 163
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.44 E-value=7e-05 Score=65.17 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=52.6
Q ss_pred HHHHHHhh-ccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCC
Q 018875 121 DELKNFFS-KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP 185 (349)
Q Consensus 121 e~l~~~F~-~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~ 185 (349)
|+|..+|+ +|++|+++.|..+. ...-.|-++|.|..+++|++|++.||+..+.+++|..++..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44445555 89999999777653 344577899999999999999999999999999999988764
No 164
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.43 E-value=0.00058 Score=49.27 Aligned_cols=59 Identities=14% Similarity=0.262 Sum_probs=42.8
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH 81 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~ 81 (349)
.+..++..+|. +|.+|...||.++|+.||.|.- .-+.+. .|||...+.+.|..|+..+.
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~V-sWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYV-SWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCEEE-EEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcEEE-EEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 44556677777 9999999999999999999864 444443 79999999999999887543
No 165
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00067 Score=64.65 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=61.7
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFG-KYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~-~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
+..-.+.+||||+.||--+|.++|..+|+ .||-|.-+-|-.|++-+.++|.+-|+|.+..+-.+||+.
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34456789999999999999999999998 789999999999977899999999999999999999983
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.00042 Score=66.48 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCC--CC----HHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC-Ce
Q 018875 104 FKTKKIFVGGIPSS--VS----EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA-GT 176 (349)
Q Consensus 104 ~~~~~l~V~nL~~~--~t----~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~-g~ 176 (349)
.-...|+|.|+|-- +. ...|..+|+++|+|..+.++.+.+++ .+|+.|++|++..+|+.|++.||++.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 35668888888842 22 23456899999999999999886555 9999999999999999999999999875 56
Q ss_pred EEEEEe
Q 018875 177 QVEIKK 182 (349)
Q Consensus 177 ~i~v~~ 182 (349)
++.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 676653
No 167
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.23 E-value=0.0019 Score=44.25 Aligned_cols=56 Identities=25% Similarity=0.450 Sum_probs=46.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc---CceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKY---GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~---G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 168 (349)
...+|+|.++ .+++.++|+.+|..| .....|..+.|. .|-|.|.+.+.|.+||.+|
T Consensus 4 rpeavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4568999998 568899999999988 235577777774 7899999999999999875
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.20 E-value=0.0015 Score=49.54 Aligned_cols=72 Identities=24% Similarity=0.396 Sum_probs=51.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEE-------------EEecCCCCCcccEEEEEecCHHHHHHHHHhCCCc
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ-------------IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI 171 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~-------------i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~ 171 (349)
....|.|-+.|+. ....|.++|++||+|.+.. +... .....|+|+++.+|++||.+ |+.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~------~NWi~I~Y~~~~~A~rAL~~-NG~ 76 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSG------GNWIHITYDNPLSAQRALQK-NGT 76 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CC------TTEEEEEESSHHHHHHHHTT-TTE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCC------CCEEEEECCCHHHHHHHHHh-CCe
Confidence 4556888888888 6677889999999998774 2222 22889999999999999997 999
Q ss_pred ccCCeEE-EEEeCC
Q 018875 172 DMAGTQV-EIKKAE 184 (349)
Q Consensus 172 ~~~g~~i-~v~~a~ 184 (349)
.|.+..+ -|.+++
T Consensus 77 i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 77 IFSGSLMVGVKPCD 90 (100)
T ss_dssp EETTCEEEEEEE-H
T ss_pred EEcCcEEEEEEEcH
Confidence 9988654 465553
No 169
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.19 E-value=0.00077 Score=60.83 Aligned_cols=111 Identities=18% Similarity=0.311 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCcCCcHHH------HHHHHhcCCCeeEEEEeecCCCC-CcceEE--EEEeCCHHHHHHHHHc--cCccC
Q 018875 16 ASPGKIFIGGLPKDTTYAT------FNKHFGKYGDITDSVIMKDRYTG-QPRGFG--FITYADPSVVDKVIED--THIIN 84 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~------l~~~F~~~G~i~~~~i~~~~~~g-~~kG~a--fVef~~~~~a~~al~~--~~~~~ 84 (349)
...+-|||-.||+.+..|+ -.++|-+||.|..|.|-+..... .....+ ||+|.+.|+|.+||.+ ...++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456789999998877766 24789999999988887654211 112234 9999999999999984 44889
Q ss_pred CcEEEEeecCCCCC----CCCCCCCCCeEEEcCCC---CCCCHHHHHHH
Q 018875 85 GKQVEIKRTIPKGS----GQSKDFKTKKIFVGGIP---SSVSEDELKNF 126 (349)
Q Consensus 85 g~~i~v~~~~~~~~----~~~~~~~~~~l~V~nL~---~~~t~e~l~~~ 126 (349)
++.|+...-..+-- ....=....++|+..-- ...|.++|...
T Consensus 192 Gr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 192 GRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred CceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 99888876543210 01111133455554432 34577777543
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.18 E-value=0.00011 Score=64.02 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=48.8
Q ss_pred HHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecC
Q 018875 33 ATFNKHFG-KYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTI 94 (349)
Q Consensus 33 ~~l~~~F~-~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~ 94 (349)
|+|..+|+ +|++|++++|..+. .-...|-++|.|..+++|++|++.++ .+.+++|..+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555554 89999999887765 44567889999999999999999665 8999998887764
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.00048 Score=66.11 Aligned_cols=76 Identities=18% Similarity=0.314 Sum_probs=57.4
Q ss_pred CCCceEEEcCCCcC--Cc----HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC---ccCCc
Q 018875 16 ASPGKIFIGGLPKD--TT----YATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH---IINGK 86 (349)
Q Consensus 16 ~~~~~lfV~nLp~~--~t----e~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~---~~~g~ 86 (349)
.-...|+|.++|.- +. +.-|.++|+++|+|..+.++.+. .+.++||+|++|++..+|+.|+++++ .....
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 56778999999853 22 22355678999999999999887 45599999999999999999999655 23334
Q ss_pred EEEEee
Q 018875 87 QVEIKR 92 (349)
Q Consensus 87 ~i~v~~ 92 (349)
++.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 444443
No 172
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.0011 Score=63.54 Aligned_cols=70 Identities=14% Similarity=0.270 Sum_probs=54.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc--cCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC--CcccCCeEEEE
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSK--YGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN--MIDMAGTQVEI 180 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~--~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~--~~~~~g~~i~v 180 (349)
+.+.|.|..||+++-+|+|+.+|+. |-.+.+|.+..+. -=||+|++.+||++|.+.|. .++|.+++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4567788999999999999999974 7778888876652 35999999999999988654 34566666554
Q ss_pred E
Q 018875 181 K 181 (349)
Q Consensus 181 ~ 181 (349)
.
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 173
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.99 E-value=0.0035 Score=47.59 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=48.5
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecC-------CCCCcceEEEEEeCCHHHHHHHHHc-cCccCCc
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDR-------YTGQPRGFGFITYADPSVVDKVIED-THIINGK 86 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~-------~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~ 86 (349)
..+++.|.|=++|+. ....|.++|++||+|.+..-+... ..........|+|.++.+|++||.+ ...+.+.
T Consensus 3 ~~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~ 81 (100)
T PF05172_consen 3 QDSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGS 81 (100)
T ss_dssp -GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTC
T ss_pred CcCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCc
Confidence 345667888899998 555788999999999877511100 0011224899999999999999994 4466664
Q ss_pred EE-EEeec
Q 018875 87 QV-EIKRT 93 (349)
Q Consensus 87 ~i-~v~~~ 93 (349)
.+ -|.+.
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 43 35554
No 174
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.98 E-value=0.02 Score=52.08 Aligned_cols=7 Identities=14% Similarity=0.236 Sum_probs=2.9
Q ss_pred CHHHHHH
Q 018875 119 SEDELKN 125 (349)
Q Consensus 119 t~e~l~~ 125 (349)
+|++|+.
T Consensus 199 ~w~~iE~ 205 (465)
T KOG3973|consen 199 TWPEIEK 205 (465)
T ss_pred hHHHHHH
Confidence 4444433
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.97 E-value=0.00069 Score=59.01 Aligned_cols=73 Identities=22% Similarity=0.358 Sum_probs=62.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCC--------CCccc----EEEEEecCHHHHHHHHHhCCCcc
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHET--------NRSRG----FGFVIFDSEEVVDEMLSKGNMID 172 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~--------g~~~G----~afV~f~~~~~a~~Ai~~l~~~~ 172 (349)
..-.||+++||+.+....|+++|++||.|-+|.|.....+ +..+. .+.|+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5568999999999999999999999999999998877655 22222 35799999999999999999999
Q ss_pred cCCeE
Q 018875 173 MAGTQ 177 (349)
Q Consensus 173 ~~g~~ 177 (349)
|.++.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 176
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=96.94 E-value=0.0017 Score=47.90 Aligned_cols=66 Identities=20% Similarity=0.400 Sum_probs=48.0
Q ss_pred EEEEeCCHHHHHHHHHcc-C--ccCCcEEEEeecCCCCCC-----CCCCCCCCeEEEcCCCCCCCHHHHHHHhh
Q 018875 63 GFITYADPSVVDKVIEDT-H--IINGKQVEIKRTIPKGSG-----QSKDFKTKKIFVGGIPSSVSEDELKNFFS 128 (349)
Q Consensus 63 afVef~~~~~a~~al~~~-~--~~~g~~i~v~~~~~~~~~-----~~~~~~~~~l~V~nL~~~~t~e~l~~~F~ 128 (349)
|.|+|.+++.|++.++.. + .++...+.|+...-.... -......++|.|++||..+.+|+|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 789999999999999833 2 666666666543322211 12345778999999999999999998754
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.88 E-value=0.0039 Score=50.30 Aligned_cols=75 Identities=24% Similarity=0.312 Sum_probs=51.7
Q ss_pred CCCCeEEEcCCCC-----CCCH----HHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC
Q 018875 104 FKTKKIFVGGIPS-----SVSE----DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (349)
Q Consensus 104 ~~~~~l~V~nL~~-----~~t~----e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~ 174 (349)
++.-||.|+-+.+ .... .+|.+.|.+||+|.=|+++.+ .-+|+|.+-+.|.+|++. ++.++.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~-dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSL-DGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHG-CCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHcc-CCcEEC
Confidence 3555666655551 1222 356678889999888888766 679999999999999985 999999
Q ss_pred CeEEEEEeCCCCC
Q 018875 175 GTQVEIKKAEPKK 187 (349)
Q Consensus 175 g~~i~v~~a~~~~ 187 (349)
++.|+|.+..+..
T Consensus 96 g~~l~i~LKtpdW 108 (146)
T PF08952_consen 96 GRTLKIRLKTPDW 108 (146)
T ss_dssp TEEEEEEE-----
T ss_pred CEEEEEEeCCccH
Confidence 9999999887654
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.79 E-value=0.0041 Score=55.26 Aligned_cols=66 Identities=26% Similarity=0.118 Sum_probs=53.3
Q ss_pred HHHHHHHhhccCceEEEEEEecCCCCCc-ccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCC
Q 018875 120 EDELKNFFSKYGKVLEHQIIRDHETNRS-RGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP 185 (349)
Q Consensus 120 ~e~l~~~F~~~G~v~~v~i~~~~~~g~~-~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~ 185 (349)
++++++.+++||.|.+|.|..+...-.. .--.||+|+..++|.+|+-.||+..|.++.|...+-..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5678899999999999998877432222 11369999999999999999999999999998766543
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.74 E-value=0.0094 Score=40.83 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=44.0
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
...+|+|.++. +++.++|+.+|..| .....|.-+.|. .|-|.|.+++.|.+||.++
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 45689999984 57778999999988 123456677765 5899999999999999753
No 180
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.72 E-value=0.0035 Score=54.73 Aligned_cols=60 Identities=18% Similarity=0.407 Sum_probs=53.7
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
..|+|.||+.-++.|.|++.|+.|++|+..+++.|. ..+..+-.+|+|...-.|.+|+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHH
Confidence 579999999999999999999999999988888876 677778899999999999888873
No 181
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.65 E-value=0.0025 Score=58.73 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=60.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCC---CCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHET---NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~---g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
..|.|.||.+++|.++|+.+|.-+|.|.++.|+..... ....-.|||.|.+...+..|.. |.++.|-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 48999999999999999999999999999988864322 2334489999999999888865 5666666666666543
No 182
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.54 E-value=0.0017 Score=61.26 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=57.1
Q ss_pred eEEEcCCCCCC-CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 108 KIFVGGIPSSV-SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 108 ~l~V~nL~~~~-t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
.|.+.-.|+.+ |-++|..+|.+||.|..|.|-.... .|.|+|.+..+|-+|.. .+...|+++.|+|.|..+.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 34444455544 6688999999999999998865422 79999999999977765 4888999999999998873
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.47 E-value=0.0025 Score=61.73 Aligned_cols=77 Identities=10% Similarity=0.121 Sum_probs=62.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhh-ccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc---CCeE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFS-KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM---AGTQ 177 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~-~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~---~g~~ 177 (349)
....+..|+|.||-.-.|.-+|++++. .++.|++.||-+. |-.|||.|.+.++|.+.+.+||+... +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445677999999999999999999998 6788887755433 33899999999999999999998874 4466
Q ss_pred EEEEeCC
Q 018875 178 VEIKKAE 184 (349)
Q Consensus 178 i~v~~a~ 184 (349)
|.|.+..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 7776654
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.41 E-value=0.019 Score=45.76 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=57.4
Q ss_pred CCCCCCeEEEcCCCCCCC-HHHHH---HHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeE
Q 018875 102 KDFKTKKIFVGGIPSSVS-EDELK---NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t-~e~l~---~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~ 177 (349)
++.+-.||.|.=|..++. .|||+ ..++.||+|..|.+.-.. .|.|.|+|..+|-+|+.+++. ..-+..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 456777888887766653 34444 556789999999887542 799999999999999999776 566777
Q ss_pred EEEEeCCC
Q 018875 178 VEIKKAEP 185 (349)
Q Consensus 178 i~v~~a~~ 185 (349)
+.+.|-..
T Consensus 154 ~qCsWqqr 161 (166)
T PF15023_consen 154 FQCSWQQR 161 (166)
T ss_pred EEeecccc
Confidence 77776553
No 185
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.29 E-value=0.011 Score=42.67 Aligned_cols=55 Identities=15% Similarity=0.326 Sum_probs=40.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
...+|. +|.++...||.++|+.||.|.--+| .+. .|||...+.+.|..|+..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-NDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 345555 9999999999999999999864444 442 899999999999999887654
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.20 E-value=0.013 Score=56.59 Aligned_cols=69 Identities=10% Similarity=0.237 Sum_probs=56.2
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHh--cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH----ccCccCCcEEE
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFG--KYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE----DTHIINGKQVE 89 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~--~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~----~~~~~~g~~i~ 89 (349)
...|.|.|..||.++.+|+|+.+|+ .|-++++|.+..+. -.||+|+++.||+.|.+ +.+.|.+++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3456778899999999999999995 47788899888876 37999999999999876 34478888775
Q ss_pred Ee
Q 018875 90 IK 91 (349)
Q Consensus 90 v~ 91 (349)
.+
T Consensus 246 AR 247 (684)
T KOG2591|consen 246 AR 247 (684)
T ss_pred hh
Confidence 43
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.16 E-value=0.006 Score=59.18 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=59.2
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC-----cc
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFG-KYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-----II 83 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~-~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~-----~~ 83 (349)
+.++....++.|+|.||-.-+|.-+|++++. .++.|++.||-+-+ -.|||.|.+.++|.+.+..+| .-
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK------ShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK------SHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh------cceeEecccHHHHHHHHHHHhccccCCC
Confidence 3444667789999999999999999999996 67888888665544 479999999999998877655 22
Q ss_pred CCcEEEEee
Q 018875 84 NGKQVEIKR 92 (349)
Q Consensus 84 ~g~~i~v~~ 92 (349)
+.+.|.+.+
T Consensus 510 NPK~L~adf 518 (718)
T KOG2416|consen 510 NPKHLIADF 518 (718)
T ss_pred CCceeEeee
Confidence 345555544
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.14 E-value=0.063 Score=41.55 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=51.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcc-CceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCC
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKY-GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~-G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g 175 (349)
...+.+...|+.++.++|..+.+.+ -.|..++|+++... .+=.++++|.+.++|.+-.+.+|++.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455555666677777887777766 45778899987543 34478999999999999999999988754
No 189
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.14 E-value=0.36 Score=44.27 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=3.6
Q ss_pred HHHHHHhh
Q 018875 121 DELKNFFS 128 (349)
Q Consensus 121 e~l~~~F~ 128 (349)
++|.+.|.
T Consensus 243 ~ei~~~~~ 250 (465)
T KOG3973|consen 243 EEIQSILS 250 (465)
T ss_pred HHHHHHHH
Confidence 34444443
No 190
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.12 E-value=0.0037 Score=54.58 Aligned_cols=70 Identities=16% Similarity=0.380 Sum_probs=55.3
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCC--------CCcce----EEEEEeCCHHHHHHHHHccC--c
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT--------GQPRG----FGFITYADPSVVDKVIEDTH--I 82 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~--------g~~kG----~afVef~~~~~a~~al~~~~--~ 82 (349)
..-+||+++||+.+....|+++|+.||+|-.|.|.....+ +.++. -.+|||.+...|+++.+.++ .
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999887654 22222 36799999999998877443 4
Q ss_pred cCCc
Q 018875 83 INGK 86 (349)
Q Consensus 83 ~~g~ 86 (349)
|.++
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 4443
No 191
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.00 E-value=0.22 Score=44.74 Aligned_cols=158 Identities=9% Similarity=0.128 Sum_probs=101.1
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCC-------CCCcceEEEEEeCCHHHHHHHHH----cc
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRY-------TGQPRGFGFITYADPSVVDKVIE----DT 80 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~-------~g~~kG~afVef~~~~~a~~al~----~~ 80 (349)
-.++=.++.|...||..+++-.++...|.+|++|++|.++.+.. .-+..-...+.|-+.+.|..... .+
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 44555678899999999999999999999999999999998761 11234578899999998765432 22
Q ss_pred ----CccCCcEEEEeecCCCCCC---------C-------------CCCCCCCeEEEcCCCCCC-CHHHHHHHhh---cc
Q 018875 81 ----HIINGKQVEIKRTIPKGSG---------Q-------------SKDFKTKKIFVGGIPSSV-SEDELKNFFS---KY 130 (349)
Q Consensus 81 ----~~~~g~~i~v~~~~~~~~~---------~-------------~~~~~~~~l~V~nL~~~~-t~e~l~~~F~---~~ 130 (349)
..++...|.+.....+-.. . .....++.|.|.=- ..+ +++.|.+.+. .-
T Consensus 89 sEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccC
Confidence 2556666665543311000 0 01124455665433 333 3333433322 11
Q ss_pred C----ceEEEEEEecCCC--CCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 131 G----KVLEHQIIRDHET--NRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 131 G----~v~~v~i~~~~~~--g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
. .|+.|.|+..... .-++-||.++|-+...|...++-|..
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 2 4677888865433 33566999999999999988886553
No 192
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.98 E-value=0.045 Score=43.76 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=54.3
Q ss_pred CCCCceEEEcCCCcC----CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC-ccCCcEEE
Q 018875 15 GASPGKIFIGGLPKD----TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVE 89 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~----~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~-~~~g~~i~ 89 (349)
+.+-.||.|.=|..+ -+...|...++.||+|++|.++-.. .|.|.|+|..+|-+|+...+ ...+..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 445567777655544 3444566678899999998887654 69999999999999999655 56677777
Q ss_pred EeecC
Q 018875 90 IKRTI 94 (349)
Q Consensus 90 v~~~~ 94 (349)
+.|..
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 77654
No 193
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.75 E-value=0.0026 Score=64.46 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=66.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
.+.+||++||+..+++.+|+..|..+|.|.+|+|-..+....+. |+||.|.+.+.+-+|...+....|..-.+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa-~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESA-YAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccc-hhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 56799999999999999999999999999999998775444344 99999999999999998888887776666665554
No 194
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.60 E-value=0.049 Score=44.02 Aligned_cols=73 Identities=15% Similarity=0.307 Sum_probs=49.9
Q ss_pred CCCceEEEcCCC------cCCcH---HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCC
Q 018875 16 ASPGKIFIGGLP------KDTTY---ATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIING 85 (349)
Q Consensus 16 ~~~~~lfV~nLp------~~~te---~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g 85 (349)
.+.-||.|.=+. ....+ ++|.+.|++||++.-++++.+. -+|+|.+-+.|.+|++ +...+.+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEETT
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEECC
Confidence 345566665444 12222 3577788899998878777764 7899999999999999 6678999
Q ss_pred cEEEEeecCCC
Q 018875 86 KQVEIKRTIPK 96 (349)
Q Consensus 86 ~~i~v~~~~~~ 96 (349)
+.|.|+...+.
T Consensus 97 ~~l~i~LKtpd 107 (146)
T PF08952_consen 97 RTLKIRLKTPD 107 (146)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEeCCcc
Confidence 99999887654
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.44 E-value=0.013 Score=49.60 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=50.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc-cCce---EEEEEEecCCCC--CcccEEEEEecCHHHHHHHHHhCCCcccCC---
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSK-YGKV---LEHQIIRDHETN--RSRGFGFVIFDSEEVVDEMLSKGNMIDMAG--- 175 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~-~G~v---~~v~i~~~~~~g--~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g--- 175 (349)
...+|.|.+||+++||+++.+.+.. +... ..+.-......- ....-|+|.|.+.+++..-++.++++.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999998876 5544 233311222211 123358999999999999999999877643
Q ss_pred --eEEEEEeCCCCC
Q 018875 176 --TQVEIKKAEPKK 187 (349)
Q Consensus 176 --~~i~v~~a~~~~ 187 (349)
....|++|.-+.
T Consensus 86 ~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 86 NEYPAVVEFAPYQK 99 (176)
T ss_dssp -EEEEEEEE-SS--
T ss_pred CCcceeEEEcchhc
Confidence 355666666533
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.44 E-value=0.078 Score=50.15 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=54.9
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKY-GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH 81 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~-G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~ 81 (349)
...+++++.|+|=-+|..+|..||..|...+ -.|.+|+|+++... ++=.+.|.|.+.++|....++.+
T Consensus 68 ~~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 68 LKNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred cccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcC
Confidence 3444458899999999999999999999765 45899999996533 33369999999999999998544
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.43 E-value=0.16 Score=39.30 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=48.3
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
...+......+.+...|+-++.++|..+.+.+- .|..++|+++.. .++=.+.|+|.+.++|++..++.
T Consensus 6 ~~~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~f 74 (110)
T PF07576_consen 6 DLPDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEF 74 (110)
T ss_pred CCCCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHh
Confidence 333444455566666667777777877777764 477788888753 35557999999999999998853
No 198
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.11 Score=50.66 Aligned_cols=127 Identities=13% Similarity=0.223 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCcC-CcHHHHHHHHhcC----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEE
Q 018875 15 GASPGKIFIGGLPKD-TTYATFNKHFGKY----GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVE 89 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~-~te~~l~~~F~~~----G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~ 89 (349)
...+++|-|-||.|+ +...+|.-+|+.| |.|.+|.|.... |-....++. .+++-++.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------------FGkeRM~eE------eV~GP~~e 232 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------------FGKERMKEE------EVHGPPKE 232 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------------hhHHHhhhh------cccCChhh
Confidence 456889999999998 7888999999877 578888888753 222211111 23343333
Q ss_pred EeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC
Q 018875 90 IKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (349)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 169 (349)
+..... ...... ..+...++.+++.+.+|. +..+... ||.|+|.+.+.|.+..+.++
T Consensus 233 l~~~~e--~~~~s~----------sD~ee~~~~~~~kLR~Yq-~~rLkYY----------yAVvecDsi~tA~~vYe~CD 289 (650)
T KOG2318|consen 233 LFKPVE--EYKESE----------SDDEEEEDVDREKLRQYQ-LNRLKYY----------YAVVECDSIETAKAVYEECD 289 (650)
T ss_pred hccccc--cCcccc----------cchhhhhhHHHHHHHHHH-hhhheeE----------EEEEEecCchHHHHHHHhcC
Confidence 222111 111000 111111222344444442 2222221 89999999999999999999
Q ss_pred CcccCCeEEEEEe
Q 018875 170 MIDMAGTQVEIKK 182 (349)
Q Consensus 170 ~~~~~g~~i~v~~ 182 (349)
+.++......+.+
T Consensus 290 G~EfEsS~~~~DL 302 (650)
T KOG2318|consen 290 GIEFESSANKLDL 302 (650)
T ss_pred cceeccccceeee
Confidence 9998876555443
No 199
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.17 E-value=0.0025 Score=62.55 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--cCccC
Q 018875 7 SDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED--THIIN 84 (349)
Q Consensus 7 ~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~--~~~~~ 84 (349)
+..+..+...+.-+|||+||...+..+-++.++..||.|.++..+. |.|++|..+..+..|+.. ...++
T Consensus 29 p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 29 PIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCC
Confidence 3444555667788999999999999999999999999998766655 899999999988888773 33565
Q ss_pred CcEEEEee
Q 018875 85 GKQVEIKR 92 (349)
Q Consensus 85 g~~i~v~~ 92 (349)
+..+.++.
T Consensus 100 ~~kl~~~~ 107 (668)
T KOG2253|consen 100 DQKLIENV 107 (668)
T ss_pred cchhhccc
Confidence 66555443
No 200
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.15 E-value=0.06 Score=48.08 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCeeEEEEeecCCCCCcc-eEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecC
Q 018875 32 YATFNKHFGKYGDITDSVIMKDRYTGQPR-GFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTI 94 (349)
Q Consensus 32 e~~l~~~F~~~G~i~~~~i~~~~~~g~~k-G~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~ 94 (349)
++++++..++|+.|..|+|.......... --.||+|+..++|.+|+-+++ .|.++.+...+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45678888999999999998876433222 238999999999999998766 7778877665543
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.13 E-value=0.0066 Score=55.22 Aligned_cols=83 Identities=16% Similarity=0.346 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhhccCceEEEEEEecCC--C-CCcccEEEEEecCHHHHHHHHHhCCCcccCCeE
Q 018875 104 FKTKKIFVGGIPSSVSEDELK---NFFSKYGKVLEHQIIRDHE--T-NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~---~~F~~~G~v~~v~i~~~~~--~-g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~ 177 (349)
....-+||-.|+..+..+++. +.|.+||.|..|.+..+.. . .-...-++|+|++.++|..||+..++..++++.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 455678888999887666654 5788899999998887652 1 111224799999999999999999999999998
Q ss_pred EEEEeCCCC
Q 018875 178 VEIKKAEPK 186 (349)
Q Consensus 178 i~v~~a~~~ 186 (349)
|++.+..++
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 887776654
No 202
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.07 E-value=0.073 Score=38.07 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHhhccC-----ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 116 SSVSEDELKNFFSKYG-----KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 116 ~~~t~e~l~~~F~~~G-----~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
..++..+|..++.... .|-.|+|..+ |+||+-... .|++++++|++..+.+++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4678888888887653 4667888776 999998655 788899999999999999999875
No 203
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.86 E-value=0.021 Score=57.81 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=62.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc--CCeEEEEEeCCCC
Q 018875 109 IFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM--AGTQVEIKKAEPK 186 (349)
Q Consensus 109 l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~--~g~~i~v~~a~~~ 186 (349)
..+.|.+-.++-..|..+|.+||.|..++.+++.+ +|.|+|.+.+.|-.|+++|+++++ .+.+.+|.+++..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 34445556677788999999999999999988855 899999999999999999999874 6788999998876
Q ss_pred CC
Q 018875 187 KS 188 (349)
Q Consensus 187 ~~ 188 (349)
..
T Consensus 375 ~~ 376 (1007)
T KOG4574|consen 375 PM 376 (1007)
T ss_pred cc
Confidence 43
No 204
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.83 E-value=0.029 Score=52.42 Aligned_cols=76 Identities=18% Similarity=0.389 Sum_probs=58.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCc-ccCCeEEEEEeCCC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI-DMAGTQVEIKKAEP 185 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~-~~~g~~i~v~~a~~ 185 (349)
.+||+.||.+.++..+|..+|...-.-..-.++. ..+||||...+...|.+|++.++++ ++.+..++|+..-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999998652111111221 1349999999999999999998866 58899999988776
Q ss_pred CCC
Q 018875 186 KKS 188 (349)
Q Consensus 186 ~~~ 188 (349)
++.
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 543
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.38 E-value=0.13 Score=43.75 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=46.2
Q ss_pred CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC--CcccCCeEEEEEeCCCC
Q 018875 119 SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN--MIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 119 t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~--~~~~~g~~i~v~~a~~~ 186 (349)
..+.|+++|..+..+..+.+++.-. -..|.|.+.++|++|...|+ ...+.+..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4578999999999988887776522 68999999999999999999 88999999999887543
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.19 E-value=0.034 Score=54.90 Aligned_cols=73 Identities=19% Similarity=0.143 Sum_probs=64.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+..++||.||...+..+-++.++..||.|..+..+. |.|++|..+..+..|+..|+...+++..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 344678999999999999999999999999988776654 99999999999999999999999998887776
Q ss_pred eC
Q 018875 182 KA 183 (349)
Q Consensus 182 ~a 183 (349)
..
T Consensus 107 ~d 108 (668)
T KOG2253|consen 107 VD 108 (668)
T ss_pred ch
Confidence 53
No 207
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.96 E-value=0.077 Score=44.88 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=38.7
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhc-CCCe---eEEEEeecCC--CCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGK-YGDI---TDSVIMKDRY--TGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~-~G~i---~~~~i~~~~~--~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
+....+|.|.+||+.+|++++.+.++. +... ..+.-..... ......-|||.|.+.+++...++..
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~ 75 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF 75 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc
Confidence 455679999999999999999987776 4444 2222112211 1112345999999999988888743
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.90 E-value=0.26 Score=46.78 Aligned_cols=69 Identities=16% Similarity=0.322 Sum_probs=59.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-CceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKY-GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~-G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g 175 (349)
....|+|-.+|..+|-.||..++..+ -.|..++|+++....+- .++|+|.+.++|..-.+.+|++.|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnry--mvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRY--MVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceE--EEEEEeccchhHHHHHHHcCCCcCCC
Confidence 38899999999999999999999876 46889999997544433 68999999999999999999998765
No 209
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.83 E-value=0.061 Score=51.12 Aligned_cols=76 Identities=14% Similarity=0.269 Sum_probs=59.3
Q ss_pred CCCceEEEcCCCcCC-cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDT-TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~-te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~ 93 (349)
.+.+.|-|..+|... |.++|..+|.+||+|..|.|-... -.|.|+|.+..+|-+|.. ....|+++.|+|.|-
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEEe
Confidence 445566666666663 677899999999999998887763 269999999999955544 667899999999998
Q ss_pred CCCC
Q 018875 94 IPKG 97 (349)
Q Consensus 94 ~~~~ 97 (349)
.+..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 7643
No 210
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.77 E-value=0.28 Score=44.11 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=51.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeE-EEEEeCC
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ-VEIKKAE 184 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~-i~v~~a~ 184 (349)
+.-|.|-++|... ...|..+|++||+|++.....+-+ +-+|.|.+..+|+|||.+ |++.|++.. |-|..+.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~ngN------wMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSNGN------WMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCCCc------eEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 4556666666543 345778999999998776653222 889999999999999997 777777654 3355444
Q ss_pred C
Q 018875 185 P 185 (349)
Q Consensus 185 ~ 185 (349)
.
T Consensus 269 D 269 (350)
T KOG4285|consen 269 D 269 (350)
T ss_pred C
Confidence 3
No 211
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.20 E-value=1.5 Score=44.81 Aligned_cols=61 Identities=7% Similarity=0.094 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHhhccCc-----eEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 115 PSSVSEDELKNFFSKYGK-----VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 115 ~~~~t~e~l~~~F~~~G~-----v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
...++..+|..++..-+. |-.|+|..+ |.||+... +.|.+.++.|++..+.+++|.|+.+.
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 356778888777765443 445777766 89999864 45788889999999999999999875
No 212
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=93.14 E-value=0.13 Score=42.12 Aligned_cols=116 Identities=17% Similarity=0.187 Sum_probs=77.3
Q ss_pred EEEcCC-C-cCCcHHHHHHHHhc-CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc-CccCCcEEEEeecCCC
Q 018875 21 IFIGGL-P-KDTTYATFNKHFGK-YGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK 96 (349)
Q Consensus 21 lfV~nL-p-~~~te~~l~~~F~~-~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~-~~~~g~~i~v~~~~~~ 96 (349)
..|+.+ . .+.+-+.|.+.+.+ +.....+.+..-. .++..++|.+++++.++++.. ..+.+..+.++...+.
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEecccccccccchhhhhhccc
Confidence 344444 2 34667778877755 3433334443322 158999999999999999844 3677777777766654
Q ss_pred CCCCCCCC--CCCeEEEcCCCCC-CCHHHHHHHhhccCceEEEEEEec
Q 018875 97 GSGQSKDF--KTKKIFVGGIPSS-VSEDELKNFFSKYGKVLEHQIIRD 141 (349)
Q Consensus 97 ~~~~~~~~--~~~~l~V~nL~~~-~t~e~l~~~F~~~G~v~~v~i~~~ 141 (349)
........ ...-|.|.+||.. .+++.|+++.+.+|.+..++....
T Consensus 93 ~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 93 FNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 33333222 3334777899987 577888999999999988887654
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.36 E-value=0.56 Score=42.27 Aligned_cols=70 Identities=17% Similarity=0.334 Sum_probs=50.3
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc-CccCCc-EEEEeecC
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGK-QVEIKRTI 94 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~-~~~~g~-~i~v~~~~ 94 (349)
+.=|-|-++|..... .|+.+|++||+|+++....+- .+-+|.|.+..+|.+||... ..|++. -|-|+.++
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecC
Confidence 566777788776444 688899999999987777433 38999999999999999844 344443 23344443
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.14 E-value=0.81 Score=31.84 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 116 SSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 116 ~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
..++.++|+..+.+|.- .+|..++ + ==||.|.+.++|++|....+...+....|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~-t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDR-T-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecC-C-----EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35788999999999853 3455553 1 2489999999999999999998887777654
No 215
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=90.86 E-value=0.91 Score=34.90 Aligned_cols=116 Identities=19% Similarity=0.256 Sum_probs=60.7
Q ss_pred CCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCCCCCC
Q 018875 26 LPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDF 104 (349)
Q Consensus 26 Lp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~~~~~~~~~~~ 104 (349)
||+-+++ |-++|+.-|+|.+|..+..- .| .+|.--+. .+..+++. |.|-..........+..
T Consensus 11 lPPYTnK--LSDYfeSPGKI~svItvtqy-------------pd-ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gT 73 (145)
T TIGR02542 11 LPPYTNK--LSDYFESPGKIQSVITVTQY-------------PD-NDALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGT 73 (145)
T ss_pred cCCccch--hhHHhcCCCceEEEEEEecc-------------CC-chhhheeeeehhhccCc-EEEccCCCcccEEEecC
Confidence 6766554 89999999999988776543 21 11221111 22245554 44443332111111111
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc---cCceEEEEEEecCCCCCcccEEEEEecCHH
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSK---YGKVLEHQIIRDHETNRSRGFGFVIFDSEE 159 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~---~G~v~~v~i~~~~~~g~~~G~afV~f~~~~ 159 (349)
++ ---|.--|+++|-.+|+++|++ |--|.+-.+.+|-...-+--.||..|....
T Consensus 74 Ps-gnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 74 PS-GNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CC-CCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 11 0012234678999999999985 333443344444333333347888887653
No 216
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.66 E-value=1.3 Score=41.53 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=45.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCce-EEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKV-LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v-~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
-...|-|.++|.....|||..+|+.|..- -+|..+.++ .||-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 45689999999999999999999998642 244444443 899999999999999975
No 217
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=89.55 E-value=2.1 Score=35.84 Aligned_cols=27 Identities=7% Similarity=0.268 Sum_probs=13.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEE
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~ 137 (349)
.+..||+.| .++|-++=|-|+.|.++.
T Consensus 79 fNAPIylen------k~qIGKVDEIfG~i~d~~ 105 (215)
T KOG3262|consen 79 FNAPIYLEN------KEQIGKVDEIFGPINDVH 105 (215)
T ss_pred CCCceeecc------hhhhcchhhhcccccccE
Confidence 344566554 344444444455555543
No 218
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.33 E-value=1.1 Score=41.96 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=49.5
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDI-TDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i-~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
...+..-.++|-|-++|.....+||...|+.|..- -+|..+.+. .||..|++...|..||.-.
T Consensus 384 ll~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 384 LLRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLK 447 (528)
T ss_pred CCCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhcc
Confidence 33455567899999999999999999999999652 344445554 6999999999999999843
No 219
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.19 E-value=1.2 Score=37.86 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=42.6
Q ss_pred CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC----ccCCcEEEEeecCCC
Q 018875 30 TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH----IINGKQVEIKRTIPK 96 (349)
Q Consensus 30 ~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~----~~~g~~i~v~~~~~~ 96 (349)
...+.|+++|..+.++..+..++.- .=..|.|.+.++|++|...++ .+.+..++|..+...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3567899999999998888777764 358999999999999999655 678888888877544
No 220
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=88.51 E-value=2.4 Score=39.87 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=31.2
Q ss_pred CCCCceEEEcCCCcC-CcHHHHHHHHhcC----CCeeEEEEeec
Q 018875 15 GASPGKIFIGGLPKD-TTYATFNKHFGKY----GDITDSVIMKD 53 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~-~te~~l~~~F~~~----G~i~~~~i~~~ 53 (349)
-..++.|-|-||.|+ +...+|...|+.| |.|..|.|...
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 456788999999988 7888899888877 56777777764
No 221
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.74 E-value=0.28 Score=44.88 Aligned_cols=109 Identities=23% Similarity=0.353 Sum_probs=67.1
Q ss_pred CCceEEEcCCCcCCcHHHHH---HHHhcCCCeeEEEEeecCC--CC-CcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 17 SPGKIFIGGLPKDTTYATFN---KHFGKYGDITDSVIMKDRY--TG-QPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~---~~F~~~G~i~~~~i~~~~~--~g-~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
..+.+||-.|+..+..+++. ++|.+|+.|.+|.+..+.. .. -..-.++|+|+.+++|..||...+ .++++.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34668888998776665554 4688889999988888652 11 112248999999999999999544 5666665
Q ss_pred EEeecCCCCCCC----CCCCCCCeEEEcCCC---CCCCHHHHHH
Q 018875 89 EIKRTIPKGSGQ----SKDFKTKKIFVGGIP---SSVSEDELKN 125 (349)
Q Consensus 89 ~v~~~~~~~~~~----~~~~~~~~l~V~nL~---~~~t~e~l~~ 125 (349)
+......+-... ..-.....+|+..+. ..+|.++++.
T Consensus 156 ka~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~ 199 (327)
T KOG2068|consen 156 KASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKS 199 (327)
T ss_pred HHhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHH
Confidence 554443322111 111123356665554 3455666554
No 222
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.55 E-value=0.35 Score=49.31 Aligned_cols=68 Identities=7% Similarity=0.202 Sum_probs=52.9
Q ss_pred EEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC----ccCCcEEEEeecCC
Q 018875 22 FIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH----IINGKQVEIKRTIP 95 (349)
Q Consensus 22 fV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~----~~~g~~i~v~~~~~ 95 (349)
.+.|.+...+...|..+|.+|+.|.++|.+++.+ .|.|+|.+.+.|..|++.++ .+.+-+.+|..+..
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3444555677788899999999999999999874 79999999999999998655 34455666666543
No 223
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=86.76 E-value=0.3 Score=45.64 Aligned_cols=64 Identities=11% Similarity=0.143 Sum_probs=53.2
Q ss_pred CCCCceEEEcCCCcCCcHH--------HHHHHHhc--CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 018875 15 GASPGKIFIGGLPKDTTYA--------TFNKHFGK--YGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~--------~l~~~F~~--~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~ 78 (349)
....+.+|+..+..+.+.+ ++..+|.+ +.++..+.+.++.....+++..|++|...+.|++++.
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4456778888887765554 89999988 6788888888887778899999999999999999986
No 224
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=86.62 E-value=0.74 Score=38.35 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=39.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-CceEEEEEEecCCC-CCcccEEEEEecCHHHHHHHHHh
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKY-GKVLEHQIIRDHET-NRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~-G~v~~v~i~~~~~~-g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
..++++.. .|+++|.++..-. +.+.+|.+....+. -..+|-.||+|.+.+.|.++++.
T Consensus 110 ~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 110 KERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 44566665 5555555544432 57888877665433 25678899999999999998875
No 225
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=85.22 E-value=2.3 Score=29.78 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=45.8
Q ss_pred HHHHHHhhccC-ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 121 DELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 121 e~l~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
++|.+.|...| +|..|.-+....+..+--.-||+++...+..+ .++-..+.+..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 57778887776 67788777777667776678888877655333 35677888999999876654
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.67 E-value=4.1 Score=36.54 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=39.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceE-EEEEEecCCCCCcccEEEEEecC-------HHHHHHHHHhCC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVL-EHQIIRDHETNRSRGFGFVIFDS-------EEVVDEMLSKGN 169 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~-~v~i~~~~~~g~~~G~afV~f~~-------~~~a~~Ai~~l~ 169 (349)
..|+|.|||.++...||+..+.+.+.+. .+...- +.+-||++|-+ .+++.+++..++
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 4699999999999999999998765432 232222 34579999965 445555555443
No 227
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=84.60 E-value=1.6 Score=40.67 Aligned_cols=56 Identities=9% Similarity=0.121 Sum_probs=40.3
Q ss_pred EEEEeCCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhh
Q 018875 63 GFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128 (349)
Q Consensus 63 afVef~~~~~a~~al~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~ 128 (349)
|||+|++.++|..|++.....+...+.++.+. +.+.|.-.||..+..+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~AP----------eP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAP----------EPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCC----------CcccccccccCCChHHHHHHHHHH
Confidence 79999999999999996555555666666655 445577788877777666665443
No 228
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=83.26 E-value=2.6 Score=29.42 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=46.3
Q ss_pred HHHHHHhhccC-ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 121 DELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 121 e~l~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
++|++.|++.| ++..|.-+....+..+--+-+|+.....+... .|+-+.|.++.|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 57888888887 68888888877766676677888876644433 46777889999998766543
No 229
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.79 E-value=4.8 Score=28.54 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=31.0
Q ss_pred cCCcHHHHHHHHhcCCC-----eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeec
Q 018875 28 KDTTYATFNKHFGKYGD-----ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRT 93 (349)
Q Consensus 28 ~~~te~~l~~~F~~~G~-----i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~ 93 (349)
..++..+|..++..... |-+|.|..+ |+||+.... .|+.+++.+ ..+.+++|.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45888999999977643 445666664 788988776 455666643 3788999998764
No 230
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.42 E-value=8.2 Score=26.85 Aligned_cols=42 Identities=29% Similarity=0.456 Sum_probs=32.7
Q ss_pred CCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 29 DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 29 ~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
.++.++|+..|+.|.- .+|+.++ + | -||.|.+.++|+++...
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~ 52 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRA 52 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHh
Confidence 5788899999999854 3445554 3 4 48999999999999984
No 231
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=79.22 E-value=6.6 Score=35.14 Aligned_cols=36 Identities=31% Similarity=0.572 Sum_probs=29.0
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHhhccCceEEEEEEe
Q 018875 105 KTKKIFVGGIPSS------------VSEDELKNFFSKYGKVLEHQIIR 140 (349)
Q Consensus 105 ~~~~l~V~nL~~~------------~t~e~l~~~F~~~G~v~~v~i~~ 140 (349)
.+.||++..||-. .+++.|+..|+.||.|..|+|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 4568999998832 36788999999999999988763
No 232
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=78.54 E-value=0.5 Score=48.37 Aligned_cols=38 Identities=24% Similarity=0.495 Sum_probs=28.6
Q ss_pred CCCCCceEEEcCCCcC-CcHHHHHHHHhcCC--CeeEEEEe
Q 018875 14 DGASPGKIFIGGLPKD-TTYATFNKHFGKYG--DITDSVIM 51 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~-~te~~l~~~F~~~G--~i~~~~i~ 51 (349)
+..+++||+|..||.+ .++++|.++|++.. +|....++
T Consensus 204 ~~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~~i~~~~l~ 244 (827)
T COG5594 204 NNLSSRTVLISGLPSELRSDEELKELFDKLKVGEIDSDVLC 244 (827)
T ss_pred cCCCCceEEeecCChhhcCchhHHHHHhhcCeeeeccchhh
Confidence 5668999999999988 57778999998863 34444333
No 233
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=77.52 E-value=44 Score=28.45 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=73.8
Q ss_pred EEEcC--CCcCCcHHHHHHHH-hcCCCeeEEEEeecCC--CC---------CcceEEEEEeCCHHHHHHHHHccCccCCc
Q 018875 21 IFIGG--LPKDTTYATFNKHF-GKYGDITDSVIMKDRY--TG---------QPRGFGFITYADPSVVDKVIEDTHIINGK 86 (349)
Q Consensus 21 lfV~n--Lp~~~te~~l~~~F-~~~G~i~~~~i~~~~~--~g---------~~kG~afVef~~~~~a~~al~~~~~~~g~ 86 (349)
+|... +| +|+++|+-+- ++..+-..- ++.|-- |+ ..++.++.-=.+++.++...++...+.-.
T Consensus 8 ~F~~~~~~p--~TK~EIRal~ls~L~~~~g~-~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~ 84 (187)
T COG2242 8 LFERDEGGP--MTKEEIRALTLSKLRPRPGD-RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD 84 (187)
T ss_pred hhccCCCCC--CcHHHHHHHHHHhhCCCCCC-EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC
Confidence 55555 66 8999998764 554332222 222211 11 12344444444444444433455567677
Q ss_pred EEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHH
Q 018875 87 QVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 87 ~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 166 (349)
.|+|......+.-...+ ....+||++= .+.++|-+.+..+ +. +-+--.+.+.+.|.+.+|++
T Consensus 85 n~~vv~g~Ap~~L~~~~-~~daiFIGGg---~~i~~ile~~~~~--l~------------~ggrlV~naitlE~~~~a~~ 146 (187)
T COG2242 85 NLEVVEGDAPEALPDLP-SPDAIFIGGG---GNIEEILEAAWER--LK------------PGGRLVANAITLETLAKALE 146 (187)
T ss_pred cEEEEeccchHhhcCCC-CCCEEEECCC---CCHHHHHHHHHHH--cC------------cCCeEEEEeecHHHHHHHHH
Confidence 77777665554444333 6778999874 4444444444332 00 01122334445555666666
Q ss_pred hCCCcccCCeEEEEEeCCCCC
Q 018875 167 KGNMIDMAGTQVEIKKAEPKK 187 (349)
Q Consensus 167 ~l~~~~~~g~~i~v~~a~~~~ 187 (349)
+|....+. ..++|.+++.++
T Consensus 147 ~~~~~g~~-ei~~v~is~~~~ 166 (187)
T COG2242 147 ALEQLGGR-EIVQVQISRGKP 166 (187)
T ss_pred HHHHcCCc-eEEEEEeeccee
Confidence 55555554 666666665543
No 234
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.87 E-value=6.1 Score=35.48 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=36.4
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHH
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPS 71 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~ 71 (349)
....|+|.|||.++-..+|+..+.+.+-+. +.|.+ .-+.+-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc-eeEee----ecCCcceeEecCCcc
Confidence 455699999999999999999998764432 22332 234567999998754
No 235
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=75.96 E-value=3.5 Score=34.47 Aligned_cols=57 Identities=9% Similarity=0.055 Sum_probs=37.1
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHH
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRY-TGQPRGFGFITYADPSVVDKVIE 78 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~-~g~~kG~afVef~~~~~a~~al~ 78 (349)
.++||.. |.+...++|.+|.+ +.+..|.+.+..+ ....+|..||+|.+.++|.++++
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 4456665 33344444544444 5666666555432 13678999999999999999877
No 236
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=75.93 E-value=6.6 Score=27.49 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=45.1
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEEeecCCC
Q 018875 33 ATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPK 96 (349)
Q Consensus 33 ~~l~~~F~~~G-~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~~~ 96 (349)
++|.+.|...| +|..+.-+....+....-.-||+.+...+..++ -+...+.+..|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i-~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI-YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce-eehHhhCCeEEEEecCCCC
Confidence 46788887776 577888888877777778899998887663333 2444677888888876543
No 237
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=75.37 E-value=44 Score=27.36 Aligned_cols=130 Identities=16% Similarity=0.096 Sum_probs=69.3
Q ss_pred HhcCC-CeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHccCccCCcEE-EEeecCCCCCCCCCCCCCCeEEEcCCC
Q 018875 39 FGKYG-DITDSVIMKDRYT-GQPRGFGFITYADPSVVDKVIEDTHIINGKQV-EIKRTIPKGSGQSKDFKTKKIFVGGIP 115 (349)
Q Consensus 39 F~~~G-~i~~~~i~~~~~~-g~~kG~afVef~~~~~a~~al~~~~~~~g~~i-~v~~~~~~~~~~~~~~~~~~l~V~nL~ 115 (349)
++++| +|..+.-.+++.+ .+-.--.-++..+++.+++.++.+ +.++-.| ++.-.. ......+|.|+.+-
T Consensus 26 ls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~-e~~Gi~I~~~dg~~-------~~~~~~vvLIGhiv 97 (170)
T COG2061 26 LSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLL-EEEGIIIIRFDGAR-------LREKTDVVLIGHIV 97 (170)
T ss_pred hhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHH-HhCCcEEEEecCcC-------cceeEeEEEEEeee
Confidence 44553 5767766666543 222222233344455555555543 2233222 221111 11145578888877
Q ss_pred CCCCHHHHHHHhh-ccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCe
Q 018875 116 SSVSEDELKNFFS-KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (349)
Q Consensus 116 ~~~t~e~l~~~F~-~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~ 176 (349)
.+--.+.|.++=+ .+-.|.++.+......+.+.-.--+...++++.++|+..++.....-.
T Consensus 98 ~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l~ev~~eK~ 159 (170)
T COG2061 98 HTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRLKEVAMEKD 159 (170)
T ss_pred cCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHHHHHHhhcC
Confidence 6655566655543 233677887777666666633333444578999999987765544333
No 238
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=74.83 E-value=3.7 Score=32.09 Aligned_cols=49 Identities=8% Similarity=0.232 Sum_probs=28.0
Q ss_pred eEEEcCCCcC---------CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHH
Q 018875 20 KIFIGGLPKD---------TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPS 71 (349)
Q Consensus 20 ~lfV~nLp~~---------~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~ 71 (349)
++.|.|+|.+ ++.++|++.|+.|.+++ ++.+.... -+.++|.|+|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCCh
Confidence 5667777654 35678999999998875 55666542 56799999998855
No 239
>PRK11901 hypothetical protein; Reviewed
Probab=74.61 E-value=5.7 Score=36.56 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=39.8
Q ss_pred CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEE--EecCHHHHHHHHHhCCCc
Q 018875 117 SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFV--IFDSEEVVDEMLSKGNMI 171 (349)
Q Consensus 117 ~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV--~f~~~~~a~~Ai~~l~~~ 171 (349)
...++.|+++..++. +..++|......++.. |.+| .|.+.++|++||+.|...
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 345788888888775 4667777766666665 6655 799999999999987653
No 240
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=74.28 E-value=6.6 Score=27.44 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=45.8
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEEeecCCC
Q 018875 33 ATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPK 96 (349)
Q Consensus 33 ~~l~~~F~~~G-~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~~~ 96 (349)
++|++.|+++| ++..+..|....+....-.-||+.....+... +-+++.+.++.|.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCccc
Confidence 46888888876 57888888888777777788888877654444 33555788888888876543
No 241
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=74.09 E-value=53 Score=27.73 Aligned_cols=18 Identities=6% Similarity=0.095 Sum_probs=10.8
Q ss_pred EEEEEecCHHHHHHHHHh
Q 018875 150 FGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 150 ~afV~f~~~~~a~~Ai~~ 167 (349)
.|=|.+++.+.+-+.-+.
T Consensus 80 NAPIylenk~qIGKVDEI 97 (215)
T KOG3262|consen 80 NAPIYLENKEQIGKVDEI 97 (215)
T ss_pred CCceeecchhhhcchhhh
Confidence 355666776666655443
No 242
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=73.28 E-value=2.7 Score=35.18 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=50.3
Q ss_pred CeEEEcCCCCCCC-----HHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCe-EEEE
Q 018875 107 KKIFVGGIPSSVS-----EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QVEI 180 (349)
Q Consensus 107 ~~l~V~nL~~~~t-----~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~-~i~v 180 (349)
.++.+.+|+..+- ....+.+|.+|-+.....+++. ....-|.|.+++.|..|..+++...|.+. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4566666665542 2333456666555444444432 33677899999999999999999999998 7777
Q ss_pred EeCCCC
Q 018875 181 KKAEPK 186 (349)
Q Consensus 181 ~~a~~~ 186 (349)
-++.+.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 777654
No 243
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=72.60 E-value=25 Score=27.99 Aligned_cols=59 Identities=12% Similarity=-0.024 Sum_probs=43.7
Q ss_pred CCHHHHHHHhhccCc-eEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 118 VSEDELKNFFSKYGK-VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 118 ~t~e~l~~~F~~~G~-v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
.+.+.|++.+++-+. ++.+..-.+ ...|.|++.++-.+|.+.|....-++..|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 566788888887763 444444333 78999999999999998877776666777776665
No 244
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=71.98 E-value=10 Score=29.64 Aligned_cols=37 Identities=19% Similarity=0.418 Sum_probs=21.5
Q ss_pred CCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC
Q 018875 118 VSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS 157 (349)
Q Consensus 118 ~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~ 157 (349)
++.++|++.|+.|..++...+ .... -+.++++|+|.+
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l-~~~~--gh~g~aiv~F~~ 65 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPL-YGKQ--GHTGFAIVEFNK 65 (116)
T ss_dssp --SHHHHHHHHH---SEEEEE-EETT--EEEEEEEEE--S
T ss_pred cCHHHHHHHHHhcCCceeEEC-cCCC--CCcEEEEEEECC
Confidence 355889999999988764444 4322 467899999975
No 245
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=71.78 E-value=0.61 Score=45.42 Aligned_cols=63 Identities=3% Similarity=-0.025 Sum_probs=47.5
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~ 78 (349)
...++|||.||+++++-++|..+++.+--+..+.+.......+..-+.+|+|+-.-....|+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~ 291 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACW 291 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHH
Confidence 346789999999999999999999998777766666665556666778888876544444444
No 246
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=71.45 E-value=2.5 Score=36.89 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=29.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ 137 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~ 137 (349)
.....+||+-|||..+|++.|+++.++++.+..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 34678999999999999999999999998665543
No 247
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=71.17 E-value=0.57 Score=45.62 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=52.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g 175 (349)
.+++|+|.|++++++.++|..+|+.+--+..+.+.......+..-+.+|+|+-.-....|+.+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 44679999999999999999999998777777666554444455577899986666666666666655443
No 248
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=68.76 E-value=7.6 Score=35.14 Aligned_cols=81 Identities=11% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecC-------CCCCcccEEEEEecCHHHHHHHH----HhCC--C
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDH-------ETNRSRGFGFVIFDSEEVVDEML----SKGN--M 170 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~-------~~g~~~G~afV~f~~~~~a~~Ai----~~l~--~ 170 (349)
..++.|...||..+++-..+...|.+|++|+.|.++.+. +..+......+.|-+.+.|..-. +.|+ +
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999999999876 12233447789999988776532 2232 2
Q ss_pred cccCCeEEEEEeCC
Q 018875 171 IDMAGTQVEIKKAE 184 (349)
Q Consensus 171 ~~~~g~~i~v~~a~ 184 (349)
+.+....|+|.+..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 34566666666544
No 249
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=67.34 E-value=30 Score=26.01 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=39.5
Q ss_pred eEEEcCCCcCCcHHHHHHHHhcC--------CCeeEEEEeecC-----CCCCcce-EEEEEeCCHHHHHHHHHccCccCC
Q 018875 20 KIFIGGLPKDTTYATFNKHFGKY--------GDITDSVIMKDR-----YTGQPRG-FGFITYADPSVVDKVIEDTHIING 85 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~~~--------G~i~~~~i~~~~-----~~g~~kG-~afVef~~~~~a~~al~~~~~~~g 85 (349)
++|| |.++++++++..+++++ +.|.++...-.+ -.+..+| |.++.|..+.++.+.++....++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~lri~e 87 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKALKLDE 87 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHhCCCC
Confidence 4555 55667777766655443 345544422211 1345667 688999988888888885444544
Q ss_pred cEE
Q 018875 86 KQV 88 (349)
Q Consensus 86 ~~i 88 (349)
.-|
T Consensus 88 ~Vl 90 (97)
T CHL00123 88 NVL 90 (97)
T ss_pred CeE
Confidence 433
No 250
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=64.15 E-value=30 Score=23.05 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=40.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCH----HHHHHHHHh
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSE----EVVDEMLSK 167 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~----~~a~~Ai~~ 167 (349)
|+.|.+|.-.-....|++.+.+.-.|..+.+-... ..+-|+|... ++..++|++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 56788888888889999999998888888876543 2788888743 666777765
No 251
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=62.86 E-value=18 Score=24.70 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCCeeEEEEee
Q 018875 32 YATFNKHFGKYGDITDSVIMK 52 (349)
Q Consensus 32 e~~l~~~F~~~G~i~~~~i~~ 52 (349)
.++|+++|+++|+|.-+-+-.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcc
Confidence 458999999999997555443
No 252
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=62.56 E-value=8.9 Score=28.34 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=23.0
Q ss_pred EEEEecCHHHHHHHHHh-CCCcccCCeEEEEEe
Q 018875 151 GFVIFDSEEVVDEMLSK-GNMIDMAGTQVEIKK 182 (349)
Q Consensus 151 afV~f~~~~~a~~Ai~~-l~~~~~~g~~i~v~~ 182 (349)
|+|+|++++.|++.+++ -+...++...+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 68999999999999886 233345666655543
No 253
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.47 E-value=25 Score=29.09 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=40.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 169 (349)
++.| +|+..+.+|-|.++.+-+|.|.+. .+ + .-.+.|-+.+..++||+.+.
T Consensus 114 ~iRv-~l~~~i~~erl~ei~E~~gvI~Ef---ee-~------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 114 TIRV-KLKKPIQEERLQEISEWHGVIFEF---EE-D------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred eEEE-ecCccchHHHHHHHHHHhceeEEe---cC-C------cEEEEeccHHHHHHHHHHHH
Confidence 4444 689999999999999999988665 22 1 44788999999999998653
No 254
>PRK10905 cell division protein DamX; Validated
Probab=62.37 E-value=14 Score=34.05 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEE--EecCHHHHHHHHHhCCCc
Q 018875 116 SSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFV--IFDSEEVVDEMLSKGNMI 171 (349)
Q Consensus 116 ~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV--~f~~~~~a~~Ai~~l~~~ 171 (349)
-..+++.|+++..+++ +....+......++.+ |.++ .|.+.++|++||++|-..
T Consensus 254 A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 254 SSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred ecCCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCCHH
Confidence 3346788888888874 4445555555555544 5544 799999999999987543
No 255
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=61.72 E-value=36 Score=34.84 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=37.2
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
.++|.|..||+.++.+.|.+.+.+. +.|. |.-++|. +.+ .=.--|+++....++..++.+
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~-s~~-~v~i~i~l~~~~~~~~~~~~L 282 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDY-TAE-NVEIEIKLPRGVYASEVIEAL 282 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeC-CCC-cEEEEEEECCCCCHHHHHHHH
Confidence 3689999999999999988876443 4444 4455554 222 122344566655666555543
No 256
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=60.47 E-value=33 Score=30.96 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=13.2
Q ss_pred CCCCCCHHHHHHHhhcc
Q 018875 114 IPSSVSEDELKNFFSKY 130 (349)
Q Consensus 114 L~~~~t~e~l~~~F~~~ 130 (349)
-...-++++|+++.++.
T Consensus 197 y~y~Y~~~eL~~~a~ki 213 (263)
T COG1801 197 YDYRYNEEELKEWAEKI 213 (263)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 34567999999998874
No 257
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.20 E-value=1.4 Score=41.81 Aligned_cols=78 Identities=6% Similarity=-0.163 Sum_probs=59.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP 185 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~ 185 (349)
...++..||..++++++.-+|+.++.|..+.+.+..+.+..+-.+||+-.. ++++.+|+.+.-+.+.+.+++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456788899999999999999999999998887766666666678887654 456667776666677777777766654
No 258
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=60.07 E-value=9.5 Score=35.39 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=25.3
Q ss_pred EEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCC
Q 018875 151 GFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187 (349)
Q Consensus 151 afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~ 187 (349)
|||+|++.++|+.|++.+...+. +.++|..|.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc
Confidence 79999999999999996555443 444666655443
No 259
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=58.87 E-value=29 Score=33.93 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=35.9
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEE-EeCCHHHHHHHHH
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGFGFI-TYADPSVVDKVIE 78 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~g~~kG~afV-ef~~~~~a~~al~ 78 (349)
.++|.|..||..++.+++.+.+... ..+..|.-++|..+.. +.-|| +++....++..++
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~--~vrivI~lk~~~~~~~~~~ 287 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDRE--GIRFVIELKRGAMAEVVLN 287 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCCC--ceEEEEEECCCccHHHHHH
Confidence 4689999999999999988876543 2333344444542222 45444 5655555554444
No 260
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=58.25 E-value=45 Score=30.35 Aligned_cols=140 Identities=8% Similarity=0.020 Sum_probs=61.5
Q ss_pred CCcHHHHHHHHhcCCCeeEEEEeecCCC------CCc--ceEEEEEeCCHHHHHHHHHccCccC---CcEEEE---eecC
Q 018875 29 DTTYATFNKHFGKYGDITDSVIMKDRYT------GQP--RGFGFITYADPSVVDKVIEDTHIIN---GKQVEI---KRTI 94 (349)
Q Consensus 29 ~~te~~l~~~F~~~G~i~~~~i~~~~~~------g~~--kG~afVef~~~~~a~~al~~~~~~~---g~~i~v---~~~~ 94 (349)
.+++++|.+.+... -|.++.+.+. ... ......-|-+.++|+++++++..-+ ...++| ....
T Consensus 62 AL~~~~V~~kL~~V----PVF~itn~~G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~ 137 (274)
T PF04278_consen 62 ALPEEEVEEKLAGV----PVFTITNSQGEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASGAKVVPVSLGK 137 (274)
T ss_dssp ---HHHHHHHHTTS----EEEEEE-TT--B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHH
T ss_pred cCCHHHHHHHhcCc----eEEEEECCCCCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCceEEEEecHHH
Confidence 46788899888763 2333333210 011 2234466779999999888443211 122222 2211
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCce----E--EEEEEec----CCCCCcccEEEEEecCHHHHHHH
Q 018875 95 PKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKV----L--EHQIIRD----HETNRSRGFGFVIFDSEEVVDEM 164 (349)
Q Consensus 95 ~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v----~--~v~i~~~----~~~g~~~G~afV~f~~~~~a~~A 164 (349)
..+.......+...|...=+|.....+.-++++++-+.- . -|-+.+. -...+........|-+.++++++
T Consensus 138 vY~l~~~~~~k~~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlFF~kedL~~~ 217 (274)
T PF04278_consen 138 VYQLAQENKKKPEGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLFFDKEDLQAA 217 (274)
T ss_dssp HHHHHHHTTT-TT-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEESSHHHHHHH
T ss_pred HHHHHHHhhcCCcCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEEecHHHHHHH
Confidence 100000111144556666666655555555554433321 1 1222222 00011122456688999999999
Q ss_pred HHhCCCcc
Q 018875 165 LSKGNMID 172 (349)
Q Consensus 165 i~~l~~~~ 172 (349)
++++....
T Consensus 218 l~k~~kq~ 225 (274)
T PF04278_consen 218 LEKAKKQQ 225 (274)
T ss_dssp HHHHTTT-
T ss_pred HHHHHHhC
Confidence 99865443
No 261
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=58.10 E-value=22 Score=26.06 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHhhcc-C-ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh
Q 018875 113 GIPSSVSEDELKNFFSKY-G-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 113 nL~~~~t~e~l~~~F~~~-G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
-++..++..+|++.++++ + .|..|..+.... ..--|+|++...++|.....+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 356788999999999875 3 466666655432 223699999988888776554
No 262
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=56.92 E-value=27 Score=25.12 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=37.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhcc-C-ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh
Q 018875 109 IFVGGIPSSVSEDELKNFFSKY-G-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 109 l~V~nL~~~~t~e~l~~~F~~~-G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
.|+=.++..++..+|++.++++ + .|..|..+.-.. ..--|||++..-++|...-.+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 3444467788999999999875 3 456665554432 223699999887777766544
No 263
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=56.58 E-value=71 Score=22.84 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=37.8
Q ss_pred EEEcCCCCCCCHHHHHHHhh-------ccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh
Q 018875 109 IFVGGIPSSVSEDELKNFFS-------KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 109 l~V~nL~~~~t~e~l~~~F~-------~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
|...+||..+|.++|.+... ++-.|..++.......+ +-||+.+=.|++++.++.++
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~ 66 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARR 66 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHH
Confidence 45678998899999876544 34345555444443322 44777777889988888776
No 264
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=56.47 E-value=9.5 Score=33.41 Aligned_cols=36 Identities=11% Similarity=0.295 Sum_probs=30.2
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDS 48 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~ 48 (349)
+......+||+-|||..+|++.|.++.++++-++.+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 445667789999999999999999999999865543
No 265
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=55.59 E-value=14 Score=31.09 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=45.7
Q ss_pred CCceEEEcCCCcCC-----cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc-EE
Q 018875 17 SPGKIFIGGLPKDT-----TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK-QV 88 (349)
Q Consensus 17 ~~~~lfV~nLp~~~-----te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~-~i 88 (349)
-.+++.+.+|+.++ .+...+++|.++.+.....+++. ....-|.|.+++.|+.|...++ .+.++ .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 34457777777553 22234455666655544444443 3578899999999999887554 67777 55
Q ss_pred EEeecCC
Q 018875 89 EIKRTIP 95 (349)
Q Consensus 89 ~v~~~~~ 95 (349)
..-.+.+
T Consensus 83 k~yfaQ~ 89 (193)
T KOG4019|consen 83 KLYFAQP 89 (193)
T ss_pred EEEEccC
Confidence 5555543
No 266
>PRK11901 hypothetical protein; Reviewed
Probab=55.22 E-value=51 Score=30.51 Aligned_cols=54 Identities=17% Similarity=0.296 Sum_probs=36.4
Q ss_pred CCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEE--EeCCHHHHHHHHHccC
Q 018875 26 LPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFI--TYADPSVVDKVIEDTH 81 (349)
Q Consensus 26 Lp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afV--ef~~~~~a~~al~~~~ 81 (349)
|-....++.|..|.+++. +..+++.+....++. -|..| +|.+.++|++|++.|.
T Consensus 250 L~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 250 LSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred eecCCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCC
Confidence 334456888888888774 456666665433333 35444 5999999999999654
No 267
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=55.07 E-value=40 Score=25.66 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=31.4
Q ss_pred CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh
Q 018875 119 SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 119 t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
-+.+|.++++++| |.+-.|..+..++.- |+++++.|.++..++|.+
T Consensus 25 vWPE~~a~lk~ag-i~nYSIfLde~~n~l--Fgy~E~~d~~a~m~~~a~ 70 (105)
T COG3254 25 VWPELLALLKEAG-IRNYSIFLDEEENLL--FGYWEYEDFEADMAKMAE 70 (105)
T ss_pred ccHHHHHHHHHcC-CceeEEEecCCcccE--EEEEEEcChHHHHHHHhC
Confidence 3567888888887 555566655544333 999999977766666653
No 268
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=54.00 E-value=63 Score=27.44 Aligned_cols=74 Identities=16% Similarity=0.352 Sum_probs=50.1
Q ss_pred CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCC----
Q 018875 43 GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSS---- 117 (349)
Q Consensus 43 G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~---- 117 (349)
-.+.-|.+++++ +-|.+.++|.+.++ +...+....|.|....+. .+..+++|||.-+.-.
T Consensus 35 ~~l~PVlF~rdK----------~I~qs~e~ai~~lE~e~KlWreteI~I~~g~p~-----VNE~TkkIYICPFTGKVF~D 99 (238)
T PF10915_consen 35 FNLQPVLFVRDK----------IIFQSAEDAIRILEEEGKLWRETEIKIQSGKPS-----VNEQTKKIYICPFTGKVFGD 99 (238)
T ss_pred cCCCceeeecch----------hhccCHHHHHHHHHHhcchheeeeEEEecCCcc-----cccccceEEEcCCcCccccC
Confidence 355667777776 78999999999998 444566667777665432 3345677777654321
Q ss_pred ----CCHHHHHHHhhccC
Q 018875 118 ----VSEDELKNFFSKYG 131 (349)
Q Consensus 118 ----~t~e~l~~~F~~~G 131 (349)
-.++.|.+..++|-
T Consensus 100 Nt~~nPQDAIYDWvSkCP 117 (238)
T PF10915_consen 100 NTHPNPQDAIYDWVSKCP 117 (238)
T ss_pred CCCCChHHHHHHHHhhCC
Confidence 23577888888874
No 269
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=53.50 E-value=14 Score=28.85 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=26.7
Q ss_pred HHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC
Q 018875 125 NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (349)
Q Consensus 125 ~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~ 174 (349)
++|...-.+....|-.+ -|+..|.+-+.|-.|..-|-++.++
T Consensus 98 qlfn~~~dlq~fii~dd--------raifm~kdge~a~e~k~fll~qd~~ 139 (164)
T KOG4357|consen 98 QLFNAHVDLQRFIIDDD--------RAIFMFKDGEQAFEAKDFLLGQDFC 139 (164)
T ss_pred HhhccccceEEEEecCC--------eEEEEEeChhHHHHHHHHhhccchh
Confidence 45555544444333333 6888999999888887766655543
No 270
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=53.09 E-value=32 Score=31.57 Aligned_cols=70 Identities=7% Similarity=0.075 Sum_probs=46.3
Q ss_pred ceEEEEEeCCHHHHHHHH-HccCccCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEE
Q 018875 60 RGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138 (349)
Q Consensus 60 kG~afVef~~~~~a~~al-~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i 138 (349)
+-|+..+|.+.++|.+.. .+.....-+...+-.+-+ ....+|.+.|++|.++.+.+++.+. +.++.+
T Consensus 34 ~~~~~~dypsle~av~~yl~~~~~~~~~~a~~AiAgP--------v~gd~v~lTN~~W~~s~~~~r~~Lg----l~~v~l 101 (320)
T COG0837 34 ETYACADYPSLEEAVQDYLSEHTAVAPRSACFAIAGP--------IDGDEVRLTNHDWVFSIARMRAELG----LDHLSL 101 (320)
T ss_pred ceecccCcCCHHHHHHHHHHHhhccCccceEEEEecC--------ccCCEEeeecCcccccHHHHHHhcC----CCcEEE
Confidence 457788899988876643 333222222223333322 2556899999999999999998875 567778
Q ss_pred Eec
Q 018875 139 IRD 141 (349)
Q Consensus 139 ~~~ 141 (349)
++|
T Consensus 102 iND 104 (320)
T COG0837 102 IND 104 (320)
T ss_pred ech
Confidence 777
No 271
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=51.24 E-value=20 Score=33.77 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=46.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-ceEEEEEEecCCC--CCcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQIIRDHET--NRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G-~v~~v~i~~~~~~--g~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
....|.|.+||..+++++|.+....|- .|....+...... ......|+|.|..++++..-..-++++.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 456789999999999999999888753 2333344422211 11244689999999997777666666553
No 272
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=51.08 E-value=66 Score=21.30 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=39.3
Q ss_pred eEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCH----HHHHHHHH
Q 018875 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADP----SVVDKVIE 78 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~----~~a~~al~ 78 (349)
||.|.+|.=..-...|++.+...-.|.++.+-... ..+-|+|... ++..++|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHH
Confidence 57787887777778899999999889888876654 3688888755 44455554
No 273
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=50.80 E-value=7.4 Score=36.75 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=50.3
Q ss_pred CCeEEEcCCCCCCCH--------HHHHHHhhc--cCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHH
Q 018875 106 TKKIFVGGIPSSVSE--------DELKNFFSK--YGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~--------e~l~~~F~~--~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 166 (349)
.+.+|+.++..+.+. ++|..+|.. +..+..|...++.....+++..|++|...+.|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 456777777766554 489999998 6788888888887778889999999999999999984
No 274
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=50.49 E-value=37 Score=33.19 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=35.6
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEE-EEeCCHHHHHHHHH
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGFGF-ITYADPSVVDKVIE 78 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~g~~kG~af-Vef~~~~~a~~al~ 78 (349)
++|.|..||..++.+++.+.+.+. ..|..+.-+.+..+.+ .+.-| |+++....++..++
T Consensus 233 ~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des~~~-~~vrivI~lk~~~~~~~~~~ 295 (445)
T smart00434 233 NTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDR-TGVRIVIELKRGAMAEVVLN 295 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhccCCC-CceEEEEEECCCcCHHHHHH
Confidence 689999999999999988876542 3444444444432122 24444 45655544554444
No 275
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=50.46 E-value=25 Score=29.35 Aligned_cols=60 Identities=18% Similarity=0.086 Sum_probs=35.1
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFG-KYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~-~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~ 78 (349)
.....|-|.-=|+.++-++|.++|- .+.+.+....=.|. +..-..| |-|.++++.+.|.+
T Consensus 73 ~HaEvvrV~ydpk~~sy~~Lld~Fw~~HdPtt~n~QG~D~--GtQYRS~-I~~~s~eq~k~A~~ 133 (191)
T KOG1635|consen 73 NHAEVVRVQYDPKVISYEELLDFFWSRHDPTTLNRQGNDV--GTQYRSG-IYTYSPEQEKLARE 133 (191)
T ss_pred CcceEEEEEeCcccccHHHHHHHHHHcCCchhhhccCCcc--cceeeee-eeeCCHHHHHHHHH
Confidence 3455688888899999999999994 44444432222221 1111122 55666666666655
No 276
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=49.82 E-value=73 Score=28.83 Aligned_cols=132 Identities=12% Similarity=0.024 Sum_probs=64.0
Q ss_pred CCcHHHHHHHHhcCCC--ee----EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCcc---CCcEEEEeecCCCCCC
Q 018875 29 DTTYATFNKHFGKYGD--IT----DSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHII---NGKQVEIKRTIPKGSG 99 (349)
Q Consensus 29 ~~te~~l~~~F~~~G~--i~----~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~---~g~~i~v~~~~~~~~~ 99 (349)
..++++|.+.+...-- |. +..++..++..+ .+-|-|...++|+++++++..- .+..++|.........
T Consensus 69 AL~e~eV~ekL~~VPVFtItn~~G~pvl~s~~~~~~---~~gvf~s~qedA~afL~~lk~~~p~l~~~~kV~pvsL~~vY 145 (270)
T TIGR00995 69 TLPPEEVAKILAGTSVFTVSNAQNEFVLASDNDGEK---SIGLLCFRQEDAEAFLAQLRKRKPEVGSQAKVVPITLDQVY 145 (270)
T ss_pred cCCHHHHHHHhcCCceEEEEcCCCCeEEEECCCCCc---eEEEEECCHHHHHHHHHHHHhhCccccCCceEEEEEHHHHH
Confidence 4789999998876411 11 122233232222 3445556677799998854322 1333444332111111
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhh--c--c-Cc-e---EEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFS--K--Y-GK-V---LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~--~--~-G~-v---~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
... ...|.+.=+|....-+.-+++.+ + + |. | ..+.|.++.+ --.-.|-+.+++++.++++..
T Consensus 146 kl~---~e~l~F~fiP~~~qV~~A~~ll~~~~~~~~GVPlF~~~~Lti~~~n~------~~iP~FF~Kedlq~~L~~~kk 216 (270)
T TIGR00995 146 KLK---VEGIGFRFLPDPAQIKNALELPAANSEYFDGVPVFQSGLLVVQKKNE------RYCPVYFSKEDIEQELSKFKR 216 (270)
T ss_pred HHh---hcCccEEEeCCHHHHHHHHHHHhcCccCCCCccEEeecceEEEeCCe------EEEeeEeeHHHHHHHHHHHhH
Confidence 100 11155555665555555455551 1 1 11 1 1223333211 334477788999998887654
Q ss_pred cc
Q 018875 171 ID 172 (349)
Q Consensus 171 ~~ 172 (349)
..
T Consensus 217 q~ 218 (270)
T TIGR00995 217 ES 218 (270)
T ss_pred hC
Confidence 43
No 277
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.09 E-value=39 Score=23.11 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=16.5
Q ss_pred HHHHHHHhhccCceEEEEEEe
Q 018875 120 EDELKNFFSKYGKVLEHQIIR 140 (349)
Q Consensus 120 ~e~l~~~F~~~G~v~~v~i~~ 140 (349)
.++|+++|++.|+|.-+.|-.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcc
Confidence 367999999999998665543
No 278
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=48.84 E-value=80 Score=28.45 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=27.1
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEee
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMK 52 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~ 52 (349)
.....|+|||+.+|..-|.++++..-.+..+.+|.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 45788999999999999999998765554444444
No 279
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=47.82 E-value=1.4e+02 Score=23.87 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=50.3
Q ss_pred ceEEEcCC----CcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEE-eCCHHHHHHHHH-ccCccCCcEEEE--
Q 018875 19 GKIFIGGL----PKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFIT-YADPSVVDKVIE-DTHIINGKQVEI-- 90 (349)
Q Consensus 19 ~~lfV~nL----p~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVe-f~~~~~a~~al~-~~~~~~g~~i~v-- 90 (349)
..+++++| ...+.-.+|+++|+..| ..+|+..... |-..++ =.++++.+..|+ .+....+..+.|
T Consensus 4 yiaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~S------GNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~v 76 (137)
T PF08002_consen 4 YIALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQS------GNVVFESDRDPAELAAKIEKALEERFGFDVPVIV 76 (137)
T ss_dssp EEEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETTT------TEEEEEESS-HHHHHHHHHHHHHHH-TT---EEE
T ss_pred EEEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEee------CCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 35677766 23488999999999987 3555544432 333333 333444444444 222223333333
Q ss_pred eec------CCCCC-CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEE
Q 018875 91 KRT------IPKGS-GQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139 (349)
Q Consensus 91 ~~~------~~~~~-~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~ 139 (349)
... ..... ......+.++++|.=|...++.+.+.++-..-...+.+.+.
T Consensus 77 rs~~el~~i~~~nPf~~~~~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~~ 132 (137)
T PF08002_consen 77 RSAEELRAIIAANPFPWEAEADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRVG 132 (137)
T ss_dssp EEHHHHHHHHTT--GGGGS----SEEEEEEE-TT--HHHHHHHHTS---SEEEEE-
T ss_pred eeHHHHHHHHHHCCCcccccCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEEe
Confidence 211 01111 11112466788888888888888787777665555555553
No 280
>PF14893 PNMA: PNMA
Probab=46.38 E-value=19 Score=33.69 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSK 129 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~ 129 (349)
..+.|.|.+||.+|++++|++.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 4567999999999999999987764
No 281
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=45.79 E-value=40 Score=32.76 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=34.1
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEE-EEeCCHHHHHHHHHcc
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGFGF-ITYADPSVVDKVIEDT 80 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~g~~kG~af-Vef~~~~~a~~al~~~ 80 (349)
++|.|..||..++.+++++.+.+. +.|. |.-++|. +.+ +.-| |++....++++.++.+
T Consensus 217 ~~i~ITELP~~~~t~~~~e~i~~l~~~~~i~-I~d~~D~-Sd~--~v~ivI~lk~~~~~~~~~~~L 278 (426)
T PF00521_consen 217 NTIVITELPYGVWTEKYKEKIEELVEDKKIK-ISDYRDE-SDR--GVRIVIELKRGADPEKILEGL 278 (426)
T ss_dssp EEEEEEE--TT--HHHHHHHHHHHHHTTSST-EEEEEE--BBT--BS-EEEEESTTSHHHHHHHHH
T ss_pred cEEEEEeCCccccHHHHHHHHHHHhccCcch-hhHHHhc-CCC--ceeEEEEecCCccHHHHHHHH
Confidence 799999999999999988887654 4566 5556665 433 4444 4666655555555543
No 282
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=45.25 E-value=23 Score=33.38 Aligned_cols=63 Identities=13% Similarity=0.242 Sum_probs=43.0
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCC-eeEEEEeecCC--CCCcceEEEEEeCCHHHHHHHHH
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGD-ITDSVIMKDRY--TGQPRGFGFITYADPSVVDKVIE 78 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~-i~~~~i~~~~~--~g~~kG~afVef~~~~~a~~al~ 78 (349)
...+.|.|..||...++++|.+.+.++-+ +....+..... ...-...|+|.|..++++.....
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~ 70 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRR 70 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHh
Confidence 45678999999999999999998887633 33233332111 11224679999999999666655
No 283
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=43.80 E-value=1.2e+02 Score=21.73 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=37.2
Q ss_pred EEEcCCCcCCcHHHHHHHHhcC-------CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 21 IFIGGLPKDTTYATFNKHFGKY-------GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 21 lfV~nLp~~~te~~l~~~F~~~-------G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
|-..+||..+|.++|.+.-.+. ..|.-+.-..+. ...+-||+.+=.|++.+.++.+.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~--d~~k~~Cly~Ap~~eaV~~~~~~ 66 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSE--DDGKIFCLYEAPDEEAVREHARR 66 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEec--CCCeEEEEEECCCHHHHHHHHHH
Confidence 5567899889999988876432 233333333332 23356888888888888887763
No 284
>PF14893 PNMA: PNMA
Probab=43.46 E-value=21 Score=33.30 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=33.8
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhc-CCCeeEEEEeec---CCCCCcceEEEEEeCCHHH
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGK-YGDITDSVIMKD---RYTGQPRGFGFITYADPSV 72 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~-~G~i~~~~i~~~---~~~g~~kG~afVef~~~~~ 72 (349)
+..+.|.|.+||.++++++|++.+.. +-++-..+|+-. +.. ..-.|+|+|...-+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e~~n 74 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAEDVN 74 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeecccccc
Confidence 45678999999999999999998754 222222222221 111 12357888766443
No 285
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=42.74 E-value=72 Score=24.13 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=26.9
Q ss_pred cCCcHHHHHHHHhc-CCCeeEEEEeecCCC----CCcceEEEEEeCCHHHHHH
Q 018875 28 KDTTYATFNKHFGK-YGDITDSVIMKDRYT----GQPRGFGFITYADPSVVDK 75 (349)
Q Consensus 28 ~~~te~~l~~~F~~-~G~i~~~~i~~~~~~----g~~kG~afVef~~~~~a~~ 75 (349)
.+.+..+|++-+.+ +..-.+..++..-.| +++.|||.| |.+.+.|++
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 35778888887744 443334444444333 566777766 555555543
No 286
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=41.89 E-value=1.9e+02 Score=28.87 Aligned_cols=48 Identities=8% Similarity=0.006 Sum_probs=35.3
Q ss_pred HHHHHHHHh----cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 32 YATFNKHFG----KYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 32 e~~l~~~F~----~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
--+|..+|. .+|.|+++.+...+ ..+.+...++.|.+.++|.+|+..+
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p-~p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLP-KPPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEc-CCcceEEEEEECCCHHHHHHHHHHH
Confidence 446777664 57888888887765 3344567789999999999988753
No 287
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=41.44 E-value=1.3e+02 Score=24.89 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=43.9
Q ss_pred cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCCcEEEEeecCCCCCCCCCCCCCCeE
Q 018875 31 TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKTKKI 109 (349)
Q Consensus 31 te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~~i~v~~~~~~~~~~~~~~~~~~l 109 (349)
.-++|.+.+.+.=+|.++..+.+. .--.+=.++|......+....+.+ ...+..+-+.+... +-+|
T Consensus 55 ~i~qi~kQl~Kli~V~~V~~~~~~-~~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~------------~~~i 121 (157)
T TIGR00119 55 VLEQITKQLNKLVDVIKVSDLTES-AIVERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPD------------SYTV 121 (157)
T ss_pred HHHHHHHHHhcCccEEEEEecCCC-cceeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCC------------EEEE
Confidence 344455555555555555544443 234456788888764433332322 22566666666321 1222
Q ss_pred EEcCCCCCCCHHHHHHHhhccCceEE
Q 018875 110 FVGGIPSSVSEDELKNFFSKYGKVLE 135 (349)
Q Consensus 110 ~V~nL~~~~t~e~l~~~F~~~G~v~~ 135 (349)
-+.+ ....-+.+.+++++|+.++-
T Consensus 122 e~tG--~~~ki~~~~~~l~~~gi~e~ 145 (157)
T TIGR00119 122 EVTG--DSDKIDAFLELLRPFGIKEV 145 (157)
T ss_pred EEcC--CHHHHHHHHHHhhhcCCEEE
Confidence 2222 22233456677778885543
No 288
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=41.12 E-value=78 Score=22.73 Aligned_cols=55 Identities=5% Similarity=0.077 Sum_probs=38.6
Q ss_pred EEEcCCCcCCcHHHHHHHHhcC-C-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 018875 21 IFIGGLPKDTTYATFNKHFGKY-G-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (349)
Q Consensus 21 lfV~nLp~~~te~~l~~~F~~~-G-~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~ 78 (349)
-|+-.++.++++.+|++.++.+ + .|.+|..+..+. ..--|||.+...++|.....
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 3444578899999999999875 3 366666665542 22359999998888877544
No 289
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=40.87 E-value=64 Score=30.04 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=24.9
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT 56 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~ 56 (349)
+..++|++-+-.+---+.|++-...-|--....+.++..|
T Consensus 80 p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~T 119 (343)
T KOG2854|consen 80 PGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPT 119 (343)
T ss_pred CCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCC
Confidence 3478999988777666666666666554444444444333
No 290
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=40.39 E-value=1.2e+02 Score=27.91 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=20.9
Q ss_pred eEEEcCCCcCCcHHHHHHHHhcCCCe
Q 018875 20 KIFIGGLPKDTTYATFNKHFGKYGDI 45 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~~~G~i 45 (349)
.+.|.|||+.++...|.++++....+
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~ 128 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLF 128 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCC
Confidence 57889999999999999998653333
No 291
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=40.25 E-value=70 Score=26.93 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH-HHHccCccCCcEEEEeecCCCCCCCCCCCCCCeEE
Q 018875 32 YATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIF 110 (349)
Q Consensus 32 e~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~-al~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~l~ 110 (349)
-++|.+.|.++-.+.++..+.+. .--.+=.++|.......... .++-.+.+..+-+.+... +-+|-
T Consensus 57 ieqL~kQL~KLidVl~V~~~~~~-~~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~------------~~~ie 123 (174)
T CHL00100 57 IEQLTKQLYKLVNILKVQDITNI-PCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEE------------SLILE 123 (174)
T ss_pred HHHHHHHHHHHhHhhEEEecCCc-cceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCC------------EEEEE
Confidence 67888888888777777777664 33445578887765432222 222222566666666422 12232
Q ss_pred EcCCCCCCCHHHHHHHhhccCceEE
Q 018875 111 VGGIPSSVSEDELKNFFSKYGKVLE 135 (349)
Q Consensus 111 V~nL~~~~t~e~l~~~F~~~G~v~~ 135 (349)
+.+ ..-.-+.+.+++++||.++-
T Consensus 124 ~tG--~~~ki~a~~~~l~~~gi~e~ 146 (174)
T CHL00100 124 VTG--DPGKIVAIEQLLEKFGIIEI 146 (174)
T ss_pred EcC--CHHHHHHHHHHhhhcCCEEE
Confidence 322 22233456677778885543
No 292
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=39.92 E-value=88 Score=32.82 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=35.9
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEE-EeCCHHHHHHHHH
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGFGFI-TYADPSVVDKVIE 78 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~g~~kG~afV-ef~~~~~a~~al~ 78 (349)
..+|.|..||+.++.++|.+.+.+. ..+..+.-++|..+. .+.-|| +++....++..+.
T Consensus 248 ~~~i~ItEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~Des~~--~~vrivi~lk~~~~~~~~~~ 310 (738)
T TIGR01061 248 LNQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDR--NGIRIIIELKKDANAEKILN 310 (738)
T ss_pred CcEEEEEecCCccCHHHHHHHHHHHHhcCCccccceeeeccCC--CceEEEEEECCCCCHHHHHH
Confidence 3479999999999999988876543 223334445554332 245444 5555555555554
No 293
>PRK05560 DNA gyrase subunit A; Validated
Probab=39.71 E-value=74 Score=33.75 Aligned_cols=59 Identities=14% Similarity=0.242 Sum_probs=35.3
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEE-EeCCHHHHHHHHH
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGFGFI-TYADPSVVDKVIE 78 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~g~~kG~afV-ef~~~~~a~~al~ 78 (349)
.++|.|..||+.++.++|.+.+.+. ..|..+.-++|..+ ..++-|| +++...+++..++
T Consensus 251 ~~~i~iteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~--~~~~~~~i~~~~~~~~~~~~~ 313 (805)
T PRK05560 251 REAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDLRDESD--RDGMRIVIELKRDAVPEVVLN 313 (805)
T ss_pred CcEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccchhcCC--CCceEEEEEECCCCCHHHHHH
Confidence 4579999999999988877766432 33333333445433 2345444 5555555555544
No 294
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=38.78 E-value=54 Score=32.05 Aligned_cols=60 Identities=15% Similarity=0.064 Sum_probs=38.0
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
.++|.|..||..++.++|.+.+.+. +.|. |.-++|..+ ..- ---|++....+++..|..+
T Consensus 220 ~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~-~~v-~i~I~Lk~~~~~~~vl~~L 282 (479)
T PRK09630 220 DKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFST-DLP-HIEIKLPKGIYAKDLLRPL 282 (479)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCC-CCc-eEEEEECCCCCHHHHHHHH
Confidence 4589999999999999988876543 4443 444555422 221 2345666666666666643
No 295
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=38.48 E-value=1.5e+02 Score=21.21 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=41.3
Q ss_pred CCCCCCCHHHHHHHh-hccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 113 GIPSSVSEDELKNFF-SKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 113 nL~~~~t~e~l~~~F-~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
.+|..+.-+||.... ..||...++....+ .-.|-..+.++..+|++.++. ...-+.|+|-
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRil 75 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDR-SPHMKSLRIL 75 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHcc-CccccceeEe
Confidence 355566667766544 56888877777665 467888999999999998776 3333444443
No 296
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=38.22 E-value=2.3e+02 Score=26.55 Aligned_cols=117 Identities=14% Similarity=0.227 Sum_probs=60.0
Q ss_pred ceEEEc---CCCcCCcHHHHHHH----HhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCcc-CCcEEEE
Q 018875 19 GKIFIG---GLPKDTTYATFNKH----FGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHII-NGKQVEI 90 (349)
Q Consensus 19 ~~lfV~---nLp~~~te~~l~~~----F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~-~g~~i~v 90 (349)
.+|-|. |.+++-+-|.|+.. +++||.-.+++|++.-...+.-|.+.++...... ++..+.. .++..+|
T Consensus 110 ~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~yP~GgGeV~~~v~p~~~----l~~i~l~~~g~i~~i 185 (326)
T cd00874 110 STVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFYPRGGGEVVLTVEPSKL----LPPLLLEERGEIEKI 185 (326)
T ss_pred EEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcCCCCCEEEEEEEecccC----CCcceeecCCCeEEE
Confidence 345553 55666666666664 4678876677777654333334444444433211 1111100 0111111
Q ss_pred eecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHH---HhhccCceEEEEEEecCCCCCcccEEEEEe
Q 018875 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKN---FFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~---~F~~~G~v~~v~i~~~~~~g~~~G~afV~f 155 (349)
.-..++.+||.++.+.+++. ++++. .+.++.+..+...+.+.|++.+.+
T Consensus 186 ---------------rg~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 186 ---------------RGISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred ---------------EEEEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEE
Confidence 11467789998888777654 45552 223455555544566777765443
No 297
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=38.15 E-value=41 Score=24.43 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=23.0
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC
Q 018875 44 DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH 81 (349)
Q Consensus 44 ~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~ 81 (349)
.|.++....+ .+||.|||=.+++++..|++...
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~ 65 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIR 65 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-T
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhccc
Confidence 4555555543 56999999999999999999654
No 298
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=38.13 E-value=79 Score=33.55 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=34.3
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEE-EeCCHHHHHHHHH
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGFGFI-TYADPSVVDKVIE 78 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~g~~kG~afV-ef~~~~~a~~al~ 78 (349)
.++|.|..||..+..++|.+.+.+. ..+..+.-++|..+. .++-|| +++....++..++
T Consensus 248 ~~~i~IteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~--~~~~~~i~~k~~~~~~~~~~ 310 (800)
T TIGR01063 248 REAIIVTEIPYQVNKARLIEKIAELVREKKIEGISDIRDESDR--EGIRIVIELKRDAVAEVVLN 310 (800)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHhcCCCCccccceecCCC--CceEEEEEeCCCCCHHHHHH
Confidence 4579999999999988877766543 223333334454222 255554 4444444554444
No 299
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=37.90 E-value=85 Score=22.94 Aligned_cols=55 Identities=4% Similarity=0.050 Sum_probs=39.2
Q ss_pred EEcCCCcCCcHHHHHHHHhcC-C-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 22 FIGGLPKDTTYATFNKHFGKY-G-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 22 fV~nLp~~~te~~l~~~F~~~-G-~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
|+-.++.++++.+|++.++.+ + .|.+|..+..+. ..--|||.+...++|......
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 333467889999999999875 3 366777666542 223599999999888876553
No 300
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=37.15 E-value=43 Score=30.11 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=29.0
Q ss_pred CCCceEEEcCCCcCC------------cHHHHHHHHhcCCCeeEEEEee
Q 018875 16 ASPGKIFIGGLPKDT------------TYATFNKHFGKYGDITDSVIMK 52 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~------------te~~l~~~F~~~G~i~~~~i~~ 52 (349)
..+.||++..||-.| +++.|+..|+.||+|..|.|+.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 445689998888543 6777999999999998887754
No 301
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=36.54 E-value=84 Score=33.30 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=36.6
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhc---CCCeeEEEEeecCCCCCcceEE-EEEeCCHHHHHHHHHcc
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGK---YGDITDSVIMKDRYTGQPRGFG-FITYADPSVVDKVIEDT 80 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~---~G~i~~~~i~~~~~~g~~kG~a-fVef~~~~~a~~al~~~ 80 (349)
..++|.|..||+.++.+.|.+-+.+ -+.|. |.-+++. +.. ..- .|+++...+++..++.+
T Consensus 240 ~~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~-s~~--~vrivI~lk~~~~~~~~~~~L 303 (869)
T PRK12758 240 DKKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDN-TAA--DVEILVHLAPGVSPDKTIDAL 303 (869)
T ss_pred CCCEEEEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEec-CCC--ceEEEEEeCCCCCHHHHHHHH
Confidence 3568999999999888887776643 24454 4445553 322 233 34566655566555544
No 302
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.06 E-value=2.8e+02 Score=28.18 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=62.3
Q ss_pred cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH---HHHccC------c-cCCcEEEEeecCCCCCCC
Q 018875 31 TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK---VIEDTH------I-INGKQVEIKRTIPKGSGQ 100 (349)
Q Consensus 31 te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~---al~~~~------~-~~g~~i~v~~~~~~~~~~ 100 (349)
-.++|.+.|..-..|.++.+.-. +|-++.+.....++. ++.+.. . -.+++|.|+.+.+.
T Consensus 59 iA~~i~~~l~~~~~~~~veiaGp-------gfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaN---- 127 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAGP-------GFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSAN---- 127 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcCC-------CEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCC----
Confidence 34456666655444566655543 455555554333333 333211 2 25789999988776
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccC-ceEEEEEEec
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQIIRD 141 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G-~v~~v~i~~~ 141 (349)
++..++|+.|=..+-=+.|..+++.+| .|+....+.|
T Consensus 128 ----ptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 128 ----PTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred ----CCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 677899999999999999999999887 4666665555
No 303
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=36.01 E-value=2.5e+02 Score=25.20 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=44.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCC--CCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHET--NRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~--g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
..-||--||..+.+.-+..+-+.-+....|.+..+..- .+..-|++-|..|.++..+|....|.
T Consensus 87 vd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~na~~iaNP 152 (340)
T KOG4354|consen 87 VDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIKNARLIANP 152 (340)
T ss_pred eeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHhhhhhccCC
Confidence 34567778888887777776666677666666555422 23455778899999998888765553
No 304
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=35.77 E-value=1.3e+02 Score=29.92 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=37.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCH
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSE 158 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~ 158 (349)
..||-=++|. ..-.|++++...++-.+|.+...++.+...+-++|-|+.+
T Consensus 419 e~~~~~~fpe--rpgaL~~Fl~~l~~~~~It~f~Yr~~~~~~g~~l~gi~~~ 468 (499)
T TIGR01124 419 ERLYSFEFPE--RPGALLRFLNTLQGYWNISLFHYRNHGADYGRVLAGFQVP 468 (499)
T ss_pred ceEEEEeCCC--CccHHHHHHHhcCCCCceeeEEEecCCcccCCEEEEEecC
Confidence 4555555554 4456888888888888888888788888888888888754
No 305
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=35.44 E-value=66 Score=23.92 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=35.7
Q ss_pred EcCCCCCCCHHHHHHHhhccCce-EEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 111 VGGIPSSVSEDELKNFFSKYGKV-LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 111 V~nL~~~~t~e~l~~~F~~~G~v-~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
|-.+.+.+++..|...|.--+.- +...+.+| .-+-+|.|+|.+.+.+.+|.+.|..
T Consensus 17 lYS~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD----~W~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 17 LYSQTPNLDNNQILKQFPFPGKKNKPPSLRKD----YWRPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred EEecCcccChhHHHHhccCCCcccCCchhccc----cceEeEEEECCChHHHHHHHHHHHH
Confidence 33455677777787777654421 11222222 2344999999999999999987543
No 306
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=35.03 E-value=38 Score=34.54 Aligned_cols=91 Identities=12% Similarity=0.115 Sum_probs=57.7
Q ss_pred CCcHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecCCCCCCCCCCCCC
Q 018875 29 DTTYATFNKHFGKYGDITDSVIMKDRYT-GQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKT 106 (349)
Q Consensus 29 ~~te~~l~~~F~~~G~i~~~~i~~~~~~-g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~~~~~~~~~~~~~ 106 (349)
.+...||++.+..+..|.+.-++-..+. +-..-+|||.+++.......|. ++.. .|+-.. ..-..+.
T Consensus 507 RigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~----~VR~~i-------gp~a~P~ 575 (626)
T KOG1175|consen 507 RIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVK----HVRSVI-------GPYAVPR 575 (626)
T ss_pred eecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHH----HHHhhc-------Ccccccc
Confidence 4677889999999988888777665432 2334589999987644433333 2110 000000 0112266
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKY 130 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~ 130 (349)
+.++|.+||.+.+-..++.++.+.
T Consensus 576 ~I~~v~~LPkTrSGKimRr~lrki 599 (626)
T KOG1175|consen 576 LIVFVPGLPKTRSGKIMRRALRKI 599 (626)
T ss_pred eeEecCCCCccccchhHHHHHHHH
Confidence 789999999999988888887764
No 307
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=34.99 E-value=75 Score=30.15 Aligned_cols=101 Identities=20% Similarity=0.303 Sum_probs=50.8
Q ss_pred cHHHHHHHHhc--CCCeeEEEEeecCCCCCcceEEEEEeCCH---------HHHHHHHHccC-ccCCcEEE--EeecCCC
Q 018875 31 TYATFNKHFGK--YGDITDSVIMKDRYTGQPRGFGFITYADP---------SVVDKVIEDTH-IINGKQVE--IKRTIPK 96 (349)
Q Consensus 31 te~~l~~~F~~--~G~i~~~~i~~~~~~g~~kG~afVef~~~---------~~a~~al~~~~-~~~g~~i~--v~~~~~~ 96 (349)
+..+|.+.|.. .+.|++|.+-........+..|.|+|.+- -..++++.++. .++..... +....++
T Consensus 29 D~~~l~~~f~~~~~~~i~~I~~~~GD~H~~Gr~V~~l~f~~g~kivYKPRsl~~d~~f~~l~~~ln~~~~~~~~~l~~~~ 108 (370)
T PF13575_consen 29 DRSELREEFGIGSPGKITSIEFGLGDTHNGGRSVAILEFSSGKKIVYKPRSLSIDKAFNDLLEWLNEKNGTPSLDLPTPK 108 (370)
T ss_pred HHHHHHHHhCCCCCCCceEecCCCCCcCCCCceEEEEEECCCCEEEEeCcccHHHHHHHHHHHHHhhhccccccccccce
Confidence 34556666632 36788888744332334467899999774 23444444322 11111110 0111000
Q ss_pred CCCCCCCC-CCCeEEEcCCCCCCCHHHHHHHhhccCceE
Q 018875 97 GSGQSKDF-KTKKIFVGGIPSSVSEDELKNFFSKYGKVL 134 (349)
Q Consensus 97 ~~~~~~~~-~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~ 134 (349)
.-.... -.-.-||.+.|.. +++++++++.++|.+.
T Consensus 109 --~l~~g~~YgW~EfI~~~~c~-~~~ev~~yY~r~G~ll 144 (370)
T PF13575_consen 109 --VLDRGDGYGWQEFIEHEPCN-SEEEVERYYYRLGVLL 144 (370)
T ss_pred --eeeccCcceeEEEecCCCCC-CHHHHHHHHHHHHHHH
Confidence 000111 2334566666554 7889999888877544
No 308
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=34.88 E-value=1.2e+02 Score=23.63 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=27.8
Q ss_pred cCCcHHHHHHHHhcC-CCeeEEEEeec----CCCCCcceEEEEEeCCHHHHHH
Q 018875 28 KDTTYATFNKHFGKY-GDITDSVIMKD----RYTGQPRGFGFITYADPSVVDK 75 (349)
Q Consensus 28 ~~~te~~l~~~F~~~-G~i~~~~i~~~----~~~g~~kG~afVef~~~~~a~~ 75 (349)
..++++||++-+.+. -.-.++.++.. --.+++.+||.| |.+.|.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 457888998887653 22223333322 235788899987 555555543
No 309
>TIGR02515 IV_pilus_PilQ type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure.
Probab=34.87 E-value=68 Score=31.05 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC--HHHHHHHHHccC----ccCCcEEEEeec
Q 018875 32 YATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD--PSVVDKVIEDTH----IINGKQVEIKRT 93 (349)
Q Consensus 32 e~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~--~~~a~~al~~~~----~~~g~~i~v~~~ 93 (349)
+.+|+++|+.+.....+.|+.++.- .+..-+.|.+ .++|-.+|.+.+ ..++..+.|...
T Consensus 10 ~~~l~dvL~~la~~~g~NiVi~~~V---~g~Vtl~~~~v~~~~al~~Il~~~gl~~~~~gnvi~V~~~ 74 (418)
T TIGR02515 10 DIPVRTVLQVIAEFTNLNIVVSDSV---QGNITLRLKNVPWDQALDIILKSKGLDKRRDGNIIYIAPL 74 (418)
T ss_pred CCCHHHHHHHHHHHhCCeEEECCCC---cceEEEEEeCCCHHHHHHHHHHhCCCCEEEECCEEEEecH
Confidence 3455555555555555555555421 2445555653 445555554322 346677777643
No 310
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=34.87 E-value=59 Score=23.47 Aligned_cols=23 Identities=17% Similarity=0.554 Sum_probs=16.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKY 130 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~ 130 (349)
.++-|+|+. ++.++.|++.|..|
T Consensus 69 ~~~lV~IG~---~l~~~~l~~~l~~~ 91 (92)
T smart00833 69 RTRLVFIGR---DLDEEAIRAALDAC 91 (92)
T ss_pred ceEEEEEeC---CCCHHHHHHHHHHh
Confidence 455666664 57888899888754
No 311
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=34.46 E-value=1.2e+02 Score=27.41 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=23.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCce
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKV 133 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v 133 (349)
.....|+|||+++|..-|..+++..-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 4578899999999999999999875444
No 312
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.08 E-value=7.5 Score=37.10 Aligned_cols=52 Identities=6% Similarity=-0.247 Sum_probs=42.5
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCH
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADP 70 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~ 70 (349)
.+.|+..||..++++++.-+|..++.|.-+.+.+..+.+..+-.+||...+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~ 55 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA 55 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc
Confidence 4567889999999999999999999998887777766666677888876654
No 313
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=33.93 E-value=1.7e+02 Score=26.36 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=19.6
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhc
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGK 41 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~ 41 (349)
..+.|+|||+.++.+-|..++..
T Consensus 106 ~~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 106 PLKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred cceEEEeCCccchHHHHHHHHhc
Confidence 36789999999999888888865
No 314
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.74 E-value=74 Score=22.89 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=17.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhccC
Q 018875 109 IFVGGIPSSVSEDELKNFFSKYG 131 (349)
Q Consensus 109 l~V~nL~~~~t~e~l~~~F~~~G 131 (349)
-+|--|....++|+|+++|+..+
T Consensus 51 y~V~Fl~~~~s~eev~~ele~mg 73 (88)
T COG4009 51 YYVVFLEEVESEEEVERELEDMG 73 (88)
T ss_pred EEEEEEeccCCHHHHHHHHHHhC
Confidence 34444567789999999998876
No 315
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=33.60 E-value=34 Score=33.74 Aligned_cols=73 Identities=12% Similarity=0.237 Sum_probs=45.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 109 IFVGGIPSSVSEDELKNFFSK-YGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 109 l~V~nL~~~~t~e~l~~~F~~-~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
..+..+|..+....+...+.. +..... ..+.-.. ..+++++|++++.+.+|+..+++.......+.+......
T Consensus 28 ~~~e~~~~~~~q~~~~k~~~~~~~~~~s----~tk~~~~-~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 28 ISIEMIPTFIGQKQLNKVLLKILRDVKS----KTKLPKM-PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred cceeccCchhhhhHHHhhhhhhcccccc----cCCCCCC-CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 344455555555555554443 222211 1111122 339999999999999999999988887777776655543
No 316
>PHA00019 IV phage assembly protein
Probab=33.40 E-value=1.6e+02 Score=28.57 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=17.7
Q ss_pred CCcHHHHHHHHhcCCCeeEEEEeecC
Q 018875 29 DTTYATFNKHFGKYGDITDSVIMKDR 54 (349)
Q Consensus 29 ~~te~~l~~~F~~~G~i~~~~i~~~~ 54 (349)
++...+|+++|.-++++..+.++.++
T Consensus 27 ~f~~~dI~~vl~~la~~~g~NiVidp 52 (428)
T PHA00019 27 ELNNSPIREFVSWYSQQTGKSVVLGP 52 (428)
T ss_pred EecCCCHHHHHHHHHHhcCceEEECC
Confidence 44556677777766777777777765
No 317
>COG5337 CotH Spore coat assembly protein [Cell envelope biogenesis, outer membrane]
Probab=33.19 E-value=67 Score=30.13 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=45.2
Q ss_pred EEeCCHHHHHHHHHccC--ccCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEE-EEEEec
Q 018875 65 ITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE-HQIIRD 141 (349)
Q Consensus 65 Vef~~~~~a~~al~~~~--~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~-v~i~~~ 141 (349)
|.++-.-.++.+.+... .+.-.++.|+..+.+.-+.-+......+++. |.-+.+..-..+|+.+|.|.. +.+..-
T Consensus 99 IrlkGq~~~q~~~k~ss~id~~~~p~lisFdky~dgr~yrgit~lA~r~g--~sl~~e~laL~~~se~G~vsp~~sfa~v 176 (473)
T COG5337 99 IRLKGQSHIQDFKKKSSHIDVSTWPLLISFDKYKDGRGYRGITLLAERKG--PSLMREKLALDFFSELGTVSPKASFAFV 176 (473)
T ss_pred eEecchhhHHHhhccccccccccccceeeecccccccchhhhhHhhccCC--chHhhhhHHHHHHHHhccccccceeEEE
Confidence 34444444555554322 3444566666655544333322222223332 333344445678899987752 222211
Q ss_pred CCCCCcccEEEEEecCHHHHHHHHH
Q 018875 142 HETNRSRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 142 ~~~g~~~G~afV~f~~~~~a~~Ai~ 166 (349)
+.+.++. -.+|+.+++++--.|..
T Consensus 177 ~~nd~~~-~~yl~le~vDE~Yl~k~ 200 (473)
T COG5337 177 KMNDKNE-GVYLELESVDEYYLAKR 200 (473)
T ss_pred EecCCCC-cEEEEEecccHHHHHHh
Confidence 1222222 24566666555544433
No 318
>KOG4000 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.87 E-value=1.7e+02 Score=25.95 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=25.1
Q ss_pred HhcCCCeeEEEEeecCCCCCcceEE-EEE-eCCHHHHHHHHH
Q 018875 39 FGKYGDITDSVIMKDRYTGQPRGFG-FIT-YADPSVVDKVIE 78 (349)
Q Consensus 39 F~~~G~i~~~~i~~~~~~g~~kG~a-fVe-f~~~~~a~~al~ 78 (349)
....-+|+.+.|+.+. ...++||- .|. +.+..+|+....
T Consensus 11 ~~~~~PIT~~~IVad~-nraP~gf~~I~~~~dd~~dADLWrD 51 (291)
T KOG4000|consen 11 LPDNRPITSLHIVADF-NRAPKGFSAISRTYDDDSDADLWRD 51 (291)
T ss_pred CCCCCcceeEEEEecc-ccCCCccchheeecccccchhhhhc
Confidence 3455689999999998 66778886 443 344444444433
No 319
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=32.61 E-value=1.6e+02 Score=21.68 Aligned_cols=47 Identities=9% Similarity=-0.008 Sum_probs=32.5
Q ss_pred CHHHHHHHhhccC-ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC
Q 018875 119 SEDELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (349)
Q Consensus 119 t~e~l~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 169 (349)
.++.++++++++| +|+.+.+.... -.-...+++.|.+.|.++.-.+.
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHHHH
Confidence 3466788888874 67777776543 33367889999998887765433
No 320
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.44 E-value=1.6e+02 Score=24.52 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=44.7
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH 81 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~ 81 (349)
....+....++.| +|+..+.++-|.++-+-+|-|.+. .+. .-.+.|-+.+..++||++..
T Consensus 105 ~v~~p~~~~~iRv-~l~~~i~~erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 105 EVKAPPGFETIRV-KLKKPIQEERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred hcCCCCCceeEEE-ecCccchHHHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHHHH
Confidence 3344455566666 599999999999998888888665 332 24678999999999998654
No 321
>PLN02690 Agmatine deiminase
Probab=32.39 E-value=2.4e+02 Score=26.94 Aligned_cols=27 Identities=7% Similarity=0.135 Sum_probs=19.9
Q ss_pred CCcCCcHHHHHHHHhcCCCeeEEEEee
Q 018875 26 LPKDTTYATFNKHFGKYGDITDSVIMK 52 (349)
Q Consensus 26 Lp~~~te~~l~~~F~~~G~i~~~~i~~ 52 (349)
=.+.+|+++|++.|+++--|++|..+.
T Consensus 185 RNP~lsk~~ie~~Lk~~LGv~kvIWL~ 211 (374)
T PLN02690 185 RNPHLTKEEIEEELKEYLGVEKVIWLP 211 (374)
T ss_pred CCCCCCHHHHHHHHHHHhCCCEEEEeC
Confidence 345689999999998865566665554
No 322
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=32.36 E-value=1.4e+02 Score=20.72 Aligned_cols=46 Identities=11% Similarity=0.213 Sum_probs=36.3
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCH
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADP 70 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~ 70 (349)
.+|.|.++.=.-=...|.+.++....+.++.+-... +.++|+|.+.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~~ 49 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDSN 49 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcCC
Confidence 467777777666677899999999888888887775 4589999883
No 323
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=31.81 E-value=1.8e+02 Score=20.36 Aligned_cols=56 Identities=13% Similarity=0.262 Sum_probs=35.2
Q ss_pred EEEcCCCcCCcHHHHHHHHhc-CCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC
Q 018875 21 IFIGGLPKDTTYATFNKHFGK-YGDI-TDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH 81 (349)
Q Consensus 21 lfV~nLp~~~te~~l~~~F~~-~G~i-~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~ 81 (349)
++.-.||..++-++|...+.+ |... ..+.|......+ -+|...+.++...|++...
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 333346778888888887744 3321 244443332222 3799999999999998443
No 324
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=31.74 E-value=1e+02 Score=25.01 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=33.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhccC--ceEEEEEEecCCCCCcccEEEEEecCHHHHHHH
Q 018875 109 IFVGGIPSSVSEDELKNFFSKYG--KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164 (349)
Q Consensus 109 l~V~nL~~~~t~e~l~~~F~~~G--~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~A 164 (349)
.++=-++..++..+|++.++++- .|..|..+.-.. ..--|||.+....+|...
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---g~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---GLKKAYIRLSPDVDALDV 138 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---CceEEEEEECCCCcHHHH
Confidence 44444677889999999998753 355554444322 122699999776654443
No 325
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=30.78 E-value=1.4e+02 Score=31.45 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=25.9
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecC
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDR 54 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~ 54 (349)
..+|.|..||+.++.++|.+.+.+. ..+..+.-++|.
T Consensus 258 ~~~i~itEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~d~ 297 (742)
T PRK05561 258 RWQIVITELPYQVSKAKLIEQIAELMNAKKLPGIADVRDE 297 (742)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCccccccceec
Confidence 4679999999999999888876543 234444444554
No 326
>PHA01632 hypothetical protein
Probab=30.41 E-value=47 Score=22.02 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=17.1
Q ss_pred EEEcCCCcCCcHHHHHHHHhc
Q 018875 21 IFIGGLPKDTTYATFNKHFGK 41 (349)
Q Consensus 21 lfV~nLp~~~te~~l~~~F~~ 41 (349)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445789999999999988754
No 327
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.40 E-value=2.5e+02 Score=26.27 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=20.9
Q ss_pred EEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 153 VIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 153 V~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
||.-..++...|++.|.+-++..|. .|+.+.
T Consensus 326 IE~v~~~~v~~a~erm~kgdV~yRf-VvD~s~ 356 (360)
T KOG0023|consen 326 IELVKLSEVNEAYERMEKGDVRYRF-VVDVSK 356 (360)
T ss_pred eEEEehhHHHHHHHHHHhcCeeEEE-EEEccc
Confidence 3334445677888888888888877 555554
No 328
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.32 E-value=2.2e+02 Score=23.14 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=36.2
Q ss_pred CCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 25 GLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 25 nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
.|+..+.++.|.++.+-+|-|.+.. -.| ..+.|-|.+.+.+||++.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHH
Confidence 3788899999999998888887655 222 456799999999999854
No 329
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=30.10 E-value=91 Score=25.52 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=23.4
Q ss_pred eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 45 ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 45 i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
|.++.++.. ..||.||+....+++..++.+.
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v 66 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGI 66 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcC
Confidence 555555543 5799999999888888888754
No 330
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.07 E-value=55 Score=22.91 Aligned_cols=25 Identities=8% Similarity=-0.006 Sum_probs=20.9
Q ss_pred EEEEEecCHHHHHHHHHhCCCcccC
Q 018875 150 FGFVIFDSEEVVDEMLSKGNMIDMA 174 (349)
Q Consensus 150 ~afV~f~~~~~a~~Ai~~l~~~~~~ 174 (349)
+.+|+|.+..+|.+|-+.|+...+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCc
Confidence 6899999999999998887766553
No 331
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=29.99 E-value=2e+02 Score=20.18 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=34.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cCce-EEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC
Q 018875 109 IFVGGIPSSVSEDELKNFFSK-YGKV-LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (349)
Q Consensus 109 l~V~nL~~~~t~e~l~~~F~~-~G~v-~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 169 (349)
++.-.||..++-++|.+...+ |... ..+.|.-..+. --+|...+.++.+.|++.+.
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Ded-----gd~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDED-----GDLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCC-----CCEEEecCHHHHHHHHHHHH
Confidence 333446678888888766553 4321 12333221111 23899999999999998654
No 332
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=29.95 E-value=1.5e+02 Score=20.66 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=41.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC----HHHHHHHHHh
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS----EEVVDEMLSK 167 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~----~~~a~~Ai~~ 167 (349)
..+|+|.++.-.-....+++.++....|..+.+-.+. +.++|+|++ .++...||+.
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~~~~~~~~i~~ai~~ 62 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDSNKVDIEAIIEAIED 62 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcCCcCCHHHHHHHHHH
Confidence 3567888888777888999999998878888887663 258999987 3444445443
No 333
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.88 E-value=1.3e+02 Score=27.78 Aligned_cols=111 Identities=12% Similarity=0.169 Sum_probs=52.3
Q ss_pred EEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHccCccCCcEEEEeecCCCCCC
Q 018875 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQ-PRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSG 99 (349)
Q Consensus 21 lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~-~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~~~~~~ 99 (349)
|+..-+.....-+--++++++|..|.+.+.-....++. .-=|+-|+|++..++-+.++ ++.-+..+....+....
T Consensus 65 vmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~----ln~~P~l~~f~P~~~n~ 140 (331)
T KOG2603|consen 65 VMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLN----LNNVPHLVLFSPAKGNK 140 (331)
T ss_pred EEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhc----ccCCCeEEEeCCCcccc
Confidence 33344444444444555556676666655555443321 22368888888666666555 22222222222221111
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEec
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRD 141 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~ 141 (349)
. .+.+.....+-.. .|+|.++.+..-+|..+.|.+.
T Consensus 141 ~----~s~~~d~~~~g~~--Ae~iaqfv~~~tkv~v~si~rP 176 (331)
T KOG2603|consen 141 K----RSDQMDQQDLGFE--AEQIAQFVADRTKVNVRSIQRP 176 (331)
T ss_pred c----cCccchhhhcchh--HHHHHHHHHHhhhheeeeeecC
Confidence 1 1111122222222 5666666666666666545444
No 334
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=29.87 E-value=51 Score=32.77 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=53.7
Q ss_pred EEEEEeCCHHHHHHHHHccC-cc-CC-cEE--EEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHH-HH---hh-ccC
Q 018875 62 FGFITYADPSVVDKVIEDTH-II-NG-KQV--EIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELK-NF---FS-KYG 131 (349)
Q Consensus 62 ~afVef~~~~~a~~al~~~~-~~-~g-~~i--~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~-~~---F~-~~G 131 (349)
..||+=.|..+...|+++-. .+ ++ -.| .|......+...-...-.+.|.+-.+|+..||..+. +. +. +|.
T Consensus 564 L~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~ 643 (755)
T KOG1131|consen 564 LLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFDHHYGREVIMEGIPYQYTESRILKARLEYLRDQFQ 643 (755)
T ss_pred eEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccccccCceEEEEeccchhhHHHHHHHHHHHHHHHhc
Confidence 35666666655555665322 11 11 122 232222222222233345688899999999986643 21 11 221
Q ss_pred ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHH-HhCCCcccCCeEEE
Q 018875 132 KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML-SKGNMIDMAGTQVE 179 (349)
Q Consensus 132 ~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai-~~l~~~~~~g~~i~ 179 (349)
++. .-|++|+.-..|.+|+ ..|..+.-.+--|-
T Consensus 644 -------irE--------~dflTFDAmRhaAQC~GrvLr~K~dYg~mI~ 677 (755)
T KOG1131|consen 644 -------IRE--------NDFLTFDAMRHAAQCLGRVLRGKTDYGLMIF 677 (755)
T ss_pred -------ccc--------cceechHhHHHHHHHHHHHHhccccceeeEe
Confidence 111 5688998887777777 44555543343333
No 335
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=29.63 E-value=2.2e+02 Score=20.59 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=35.1
Q ss_pred EcCCCcCCcHHHHHHHH-------hcCCCeeEEEEeecCCCCC-cce--E-EEEEeCCHHHHHHHHH
Q 018875 23 IGGLPKDTTYATFNKHF-------GKYGDITDSVIMKDRYTGQ-PRG--F-GFITYADPSVVDKVIE 78 (349)
Q Consensus 23 V~nLp~~~te~~l~~~F-------~~~G~i~~~~i~~~~~~g~-~kG--~-afVef~~~~~a~~al~ 78 (349)
+-.|..+++++++.+++ .++-.|.++.+-++..... .++ + .+++|++.++.++-+.
T Consensus 6 lfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~ 72 (97)
T PF07876_consen 6 LFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQT 72 (97)
T ss_dssp EEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHc
Confidence 33478888888886554 3445677887766653322 233 3 4557888887766555
No 336
>PF10105 DUF2344: Uncharacterized protein conserved in bacteria (DUF2344); InterPro: IPR018768 This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function.
Probab=29.60 E-value=1.6e+02 Score=25.04 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=39.2
Q ss_pred EEEEEeCCHHHHHHHHHccCc--cCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEE
Q 018875 62 FGFITYADPSVVDKVIEDTHI--INGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139 (349)
Q Consensus 62 ~afVef~~~~~a~~al~~~~~--~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~ 139 (349)
|.-|++...-+.+.+++.++. -.+-.|.--+..+.........-....|.-.++ .++++++.+.++.|=.-.++.+.
T Consensus 63 ~~di~l~~~~~~~~~~~rLn~~lP~Gl~i~~~~~i~~~~~sl~~~i~~~~Y~i~~~-~~~~~~~~~~~~~~~~~~~~~v~ 141 (187)
T PF10105_consen 63 YMDIELEEDIDPEEVLERLNAVLPEGLRILEAEEIPPKAPSLMALINAAEYRITLP-EIDEEELEEAIEAFLAAEEIIVE 141 (187)
T ss_pred EEEEEEecCCCHHHHHHHHHHhCCCCCEEEEEEEccCCCcchhhhcceEEEEEEec-CCCHHHHHHHHHHHHCCCCEEEE
Confidence 445555544444555554432 223322222222222222222233344555555 77788888877777555666666
Q ss_pred ecCC
Q 018875 140 RDHE 143 (349)
Q Consensus 140 ~~~~ 143 (349)
+...
T Consensus 142 k~~K 145 (187)
T PF10105_consen 142 KRTK 145 (187)
T ss_pred EeCC
Confidence 5533
No 337
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=29.59 E-value=41 Score=20.28 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=10.8
Q ss_pred CcCCcHHHHHHHHhcCC
Q 018875 27 PKDTTYATFNKHFGKYG 43 (349)
Q Consensus 27 p~~~te~~l~~~F~~~G 43 (349)
-.++++++|++.|.+..
T Consensus 18 ~~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 18 TVDTDEDQLKEVFNRIK 34 (36)
T ss_dssp SS---HHHHHHHHHCS-
T ss_pred cccCCHHHHHHHHHHhc
Confidence 35789999999998753
No 338
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=29.43 E-value=95 Score=30.35 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=20.4
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcC
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKY 42 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~ 42 (349)
.++|.|..||..++.+++.+.+...
T Consensus 227 ~~~i~ItElP~~~~~~~~~~~i~~l 251 (439)
T PHA02592 227 KTKLHITEIPVKYDRETYVAVLDPL 251 (439)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHH
Confidence 4579999999999988888876543
No 339
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=29.38 E-value=87 Score=24.04 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=19.1
Q ss_pred CcCCcHHHHHHHHhcCCCeeEEEEee
Q 018875 27 PKDTTYATFNKHFGKYGDITDSVIMK 52 (349)
Q Consensus 27 p~~~te~~l~~~F~~~G~i~~~~i~~ 52 (349)
.+.+|+++|++.|.+|-.=.++.|+.
T Consensus 42 ~~~Tt~~eiedaF~~f~~RdDIaIiL 67 (121)
T KOG3432|consen 42 DSKTTVEEIEDAFKSFTARDDIAIIL 67 (121)
T ss_pred eccCCHHHHHHHHHhhccccCeEEEE
Confidence 35899999999999986644444443
No 340
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=29.07 E-value=82 Score=29.97 Aligned_cols=54 Identities=24% Similarity=0.238 Sum_probs=40.8
Q ss_pred cCCCcCCcHHHHHHHHh----cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 018875 24 GGLPKDTTYATFNKHFG----KYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (349)
Q Consensus 24 ~nLp~~~te~~l~~~F~----~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~ 78 (349)
..|-++-|--+|+.+|- ..|.|+.+.|+..+ ..++-..||+-.++-+++.+++.
T Consensus 230 ~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~-kpksvn~af~gi~sf~~v~k~fv 287 (511)
T KOG1232|consen 230 SSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPP-KPKSVNVAFIGIESFDDVQKVFV 287 (511)
T ss_pred hhhcccCccccchhheecCCceeeEEeeEEEeecC-CCcceeEEEEccccHHHHHHHHH
Confidence 34556666777888882 35778888888766 55677789999999999888765
No 341
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=28.91 E-value=1.3e+02 Score=29.73 Aligned_cols=84 Identities=8% Similarity=0.132 Sum_probs=50.0
Q ss_pred cCCcHHHHHHHHhcCCCeeEEEEeecCCCCCc-ceEEEEEeCCHH-------HHHHHHHccCccCCcEEEEeecCCCCCC
Q 018875 28 KDTTYATFNKHFGKYGDITDSVIMKDRYTGQP-RGFGFITYADPS-------VVDKVIEDTHIINGKQVEIKRTIPKGSG 99 (349)
Q Consensus 28 ~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~-kG~afVef~~~~-------~a~~al~~~~~~~g~~i~v~~~~~~~~~ 99 (349)
.++-..+|++||.++-.|+++.++--+.+.-- .=+|.|.....+ +.+++.+ ++ | ..
T Consensus 492 ENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck------~k-l-aH-------- 555 (596)
T KOG1177|consen 492 ENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCK------GK-L-AH-------- 555 (596)
T ss_pred cccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHHHh------cc-c-cc--------
Confidence 45778899999999999999988766533211 124555544332 2222222 11 0 00
Q ss_pred CCCCCCCCeEEEcCCCCCCC----HHHHHHHhhc
Q 018875 100 QSKDFKTKKIFVGGIPSSVS----EDELKNFFSK 129 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t----~e~l~~~F~~ 129 (349)
-..+...|||.++|..+| ..+|++.++.
T Consensus 556 --FKiPky~vf~~~FPlT~tGKIqKFeir~~~k~ 587 (596)
T KOG1177|consen 556 --FKIPKYFVFVDEFPLTTTGKIQKFEIREMSKG 587 (596)
T ss_pred --ccCCcEEEEeccCcccccccchhHHHHHHHHh
Confidence 011556788888887766 6778777764
No 342
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=28.82 E-value=1.4e+02 Score=28.77 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCCC
Q 018875 114 IPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 114 L~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~~ 188 (349)
|-..++.|+|..++.-.- -++|.++.|.. |+--.|... .-...++..+..+++-..|+|-|+.++.-
T Consensus 239 LG~~~~~e~L~~ll~Fa~-~kniHvI~DEI------ya~sVF~~~-~F~Sv~ev~~~~~~~~~rvHivyslSKD~ 305 (471)
T KOG0256|consen 239 LGTTLSPEELISLLNFAS-RKNIHVISDEI------YAGSVFDKS-EFRSVLEVRKDPHLDPDRVHIVYSLSKDF 305 (471)
T ss_pred CCCccCHHHHHHHHHHHh-hcceEEEeehh------hcccccCcc-CceEHHHHhhccccCCCcEEEEEEecccc
Confidence 456778899988876332 36677777754 444444433 22222333344444667788888887754
No 343
>PHA02550 32 single-stranded DNA binding protein; Provisional
Probab=28.67 E-value=4.3e+02 Score=24.19 Aligned_cols=127 Identities=16% Similarity=0.126 Sum_probs=66.6
Q ss_pred cCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEE-eCCH--HHHHHHHHccC-----------ccCCcEEEEeec
Q 018875 28 KDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFIT-YADP--SVVDKVIEDTH-----------IINGKQVEIKRT 93 (349)
Q Consensus 28 ~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVe-f~~~--~~a~~al~~~~-----------~~~g~~i~v~~~ 93 (349)
+++..++++++-.+..-...|.|+.|.....+.|-+|.- |-.. +-..+|++-.. .+.+-.+.++..
T Consensus 101 ~n~~~~~~k~~krktsY~ANIlVIkDp~~PENEGKVF~~rfGkKI~dki~aa~~~~~~~~e~~~Dv~~~weGANF~LK~K 180 (304)
T PHA02550 101 YNTGKEEYKLRKRKTSYWANILVIKDPAAPENEGKVFKYRFGKKIMDKITAAINPDFDMGEPPVDVTCPWEGANFVLKAK 180 (304)
T ss_pred hhccchHHhhhccccceeeeeEEeCCCCCCccCccEEEehhhHHHHHHHHHHhCCCCCCCCCCcCCcCcccCcceEEEee
Confidence 556666666655555556788999998887887877763 3221 11222332111 233444444331
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEE---EecCHHHHHHHHHhCCC
Q 018875 94 IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFV---IFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 94 ~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV---~f~~~~~a~~Ai~~l~~ 170 (349)
...... .-.+++-.-.+-|+.--.++.++.+|++-..+ ..|| +|.+.++.++-+.+.-+
T Consensus 181 Kv~g~~--NYD~s~f~~~s~l~~i~De~~~~~iwe~~hdL----------------~e~~a~~~FKsye~L~~rf~kVmG 242 (304)
T PHA02550 181 KVGGFP--NYDDSKFAAPSPLPNIDDEAFQKEIWEQMHDL----------------SEFVAPDKFKSYEELETKFNKVMG 242 (304)
T ss_pred eccCCC--CcccccccccccCCCCCcHHHHHHHHHhcccH----------------HHHhCHHhcCCHHHHHHHHHHHhc
Confidence 111110 00011112223343334666678888875444 3344 78888888888876444
Q ss_pred cc
Q 018875 171 ID 172 (349)
Q Consensus 171 ~~ 172 (349)
..
T Consensus 243 ~s 244 (304)
T PHA02550 243 TS 244 (304)
T ss_pred cc
Confidence 43
No 344
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=28.59 E-value=67 Score=32.59 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=50.9
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~ 78 (349)
.+..+||+.+-....+..-+..++..+.+++..+++..........-|+++|..+..++.|..
T Consensus 509 ~s~p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s 571 (681)
T KOG3702|consen 509 ASQPTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS 571 (681)
T ss_pred cCCCceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc
Confidence 344488888887777888888888888999988888887777666789999999999866654
No 345
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=28.48 E-value=2.8e+02 Score=22.98 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC-ccCCcEEEEeecCCCCCCCCCCCCCCeEEE
Q 018875 33 ATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEIKRTIPKGSGQSKDFKTKKIFV 111 (349)
Q Consensus 33 ~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~-~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V 111 (349)
++|...+++.=+|.++..+.+. .--.+=.++|......+....+.+.. .+..+-+.+ ...++.|
T Consensus 58 ~qi~kQl~KLidV~~V~~~~~~-~~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv--------------~~~~~~i 122 (161)
T PRK11895 58 EQITKQLNKLIDVLKVVDLTEE-AHVERELALVKVRASGENRAEILRLADIFRAKIVDV--------------TPESLTI 122 (161)
T ss_pred HHHHHHHhccccEEEEEecCCc-chhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEe--------------cCCEEEE
Q ss_pred cCCCCCCCHHHHHHHhhccCceEEEE
Q 018875 112 GGIPSSVSEDELKNFFSKYGKVLEHQ 137 (349)
Q Consensus 112 ~nL~~~~t~e~l~~~F~~~G~v~~v~ 137 (349)
.---..-.-+.+.+++++||.++-++
T Consensus 123 E~tG~~~ki~~~~~~l~~~gi~e~~R 148 (161)
T PRK11895 123 EVTGDSDKIDAFIDLLRPYGIKEIVR 148 (161)
T ss_pred EEeCCHHHHHHHHHHhhhcCCEEEEc
No 346
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=28.44 E-value=2.1e+02 Score=32.40 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.9
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhc
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGK 41 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~ 41 (349)
..+|.|.-||..+..+++++++..
T Consensus 885 ~~~i~ITELP~~~~t~~y~e~l~~ 908 (1388)
T PTZ00108 885 DGTVEITELPIGKWTEDYKEFLES 908 (1388)
T ss_pred CCeEEEEeCCCcccHHHHHHHHHH
Confidence 348999999999999999998876
No 347
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.37 E-value=2.9e+02 Score=22.61 Aligned_cols=58 Identities=12% Similarity=0.206 Sum_probs=41.1
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCC---------CCcce-EEEEEeCCHHHHH
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYT---------GQPRG-FGFITYADPSVVD 74 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~---------g~~kG-~afVef~~~~~a~ 74 (349)
++.+|++..++.-+++++.++..++- .++.+|.+-+.+.+ ...+. |-+|.|++-+...
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~lk 156 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKELK 156 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhhh
Confidence 34789999999999999999888653 56777776665432 12233 8888898866543
No 348
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=28.34 E-value=1.1e+02 Score=22.30 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCCCCcccEEEEEecC
Q 018875 132 KVLEHQIIRDHETNRSRGFGFVIFDS 157 (349)
Q Consensus 132 ~v~~v~i~~~~~~g~~~G~afV~f~~ 157 (349)
+|.+|+|..-...++-+++|-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 37788888877778899999999976
No 349
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=28.34 E-value=20 Score=28.95 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=28.4
Q ss_pred EEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 150 FGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 150 ~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
+..+.|.++++++++++. ....+.+..|.+..-.+.
T Consensus 57 ~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 57 LFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPD 92 (153)
T ss_pred eEEEEEEeccceeEEEec-ccccccccchhhhhhccc
Confidence 889999999999999885 555677777777666543
No 350
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=28.18 E-value=76 Score=29.55 Aligned_cols=63 Identities=5% Similarity=0.037 Sum_probs=36.2
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCC----------CCCcceEEEEEeCCHHHHHHHHHc
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRY----------TGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~----------~g~~kG~afVef~~~~~a~~al~~ 79 (349)
....+||..+--++..+.|+.+-+.+-+...+.++.-.. .-+.--|+.|.|.++++|++..+.
T Consensus 159 ka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~ 231 (343)
T KOG2854|consen 159 KAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARA 231 (343)
T ss_pred heeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHh
Confidence 345677777766666666655444332222222211100 012235899999999999988773
No 351
>PRK01060 endonuclease IV; Provisional
Probab=28.15 E-value=1.4e+02 Score=26.70 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=24.7
Q ss_pred CceEEEcCCCcC-----CcHHHHHHHHhcCCCeeEEEEeecC
Q 018875 18 PGKIFIGGLPKD-----TTYATFNKHFGKYGDITDSVIMKDR 54 (349)
Q Consensus 18 ~~~lfV~nLp~~-----~te~~l~~~F~~~G~i~~~~i~~~~ 54 (349)
..+|.|-|++.. .+.+++.++++.+..-..+.++.|.
T Consensus 139 gv~l~iEn~~~~~~~~~~~~~~~~~l~~~v~~~~~vg~~lD~ 180 (281)
T PRK01060 139 GVTIVLENTAGQGSELGRRFEELARIIDGVEDKSRVGVCLDT 180 (281)
T ss_pred CCEEEEecCCCCCCcccCCHHHHHHHHHhcCCcccEEEEEeH
Confidence 467888888643 3677888888776542236677764
No 352
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=28.11 E-value=2.2e+02 Score=23.24 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSK 129 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~ 129 (349)
..+.|.|+|+.++.+.|..+++.
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 35778999999999999988875
No 353
>COG3938 Proline racemase [Amino acid transport and metabolism]
Probab=28.04 E-value=3.3e+02 Score=25.15 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=25.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL 134 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~ 134 (349)
+-+..+|+|.|+|.-+...++.-..+-.|.|+
T Consensus 134 dGk~E~V~l~NvPsf~~~ld~~vevpglG~l~ 165 (341)
T COG3938 134 DGKVERVRLRNVPSFLHRLDASVEVPGLGRLT 165 (341)
T ss_pred CCcEEEEEEEcchhhHhhcCCeEecCCcceEE
Confidence 33456799999999999998888888888764
No 354
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=27.89 E-value=1.3e+02 Score=26.57 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=44.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEE-EEecCC---CCCcccEEEEEecCHHHHHHHHHhC
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQ-IIRDHE---TNRSRGFGFVIFDSEEVVDEMLSKG 168 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~-i~~~~~---~g~~~G~afV~f~~~~~a~~Ai~~l 168 (349)
.-+|.|.-||-.-.++.++++|++.|--..+. +..|.. -+.++ |..|+..-.--.+.|+..|
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~-y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSR-YVDLTLTGTVRLADALNHL 183 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCc-ceEEEEeeeEEHHHHHhhh
Confidence 45788888999899999999999999554443 443432 14444 7788888777777777653
No 355
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=27.83 E-value=80 Score=29.88 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=33.5
Q ss_pred CCCeEEEcCCCC----CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC
Q 018875 105 KTKKIFVGGIPS----SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS 157 (349)
Q Consensus 105 ~~~~l~V~nL~~----~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~ 157 (349)
+.+.|||.|-+. .++.++|+++.+..-. .+.|+.| .||++|..
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvD--------EAY~eF~~ 191 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVID--------EAYIEFSP 191 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEe--------CchhhcCC
Confidence 567888887653 4689999999998766 4556666 79999999
No 356
>PRK09224 threonine dehydratase; Reviewed
Probab=27.80 E-value=4.1e+02 Score=26.45 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=35.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCH
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSE 158 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~ 158 (349)
..||-=.+|. ..-.|++++...++-.+|.....++.+...+-++|-++.+
T Consensus 423 e~~~~~~fPe--rpGal~~Fl~~l~~~~~It~f~Yr~~~~~~g~vlvgi~~~ 472 (504)
T PRK09224 423 ERLYRFEFPE--RPGALLKFLSTLGTHWNISLFHYRNHGADYGRVLAGFQVP 472 (504)
T ss_pred eEEEEEeCCC--CCCHHHHHHHhcCCCCeeEEEEEccCCcccccEEEEEecC
Confidence 4555555554 3456888888888767777777777788888888887754
No 357
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=27.71 E-value=2.3e+02 Score=20.22 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=40.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccC-ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCc
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI 171 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~ 171 (349)
+|+|.|-|- .-+.+..+|..-| .|+.+.+-.....+.++ +.++...+.+..++.+++|++.
T Consensus 6 si~v~n~pG--VL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr-iti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 6 SLVIHNDPS--VLLRISGIFARRGYYISSLNLNERDTSGVSE-MKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred EEEEecCCC--HHHHHHHHHhccCcceEEEEecccCCCCeeE-EEEEEECCHHHHHHHHHHHhCC
Confidence 455555443 2345677888765 57777766544444444 6777778999999999988775
No 358
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.49 E-value=1.1e+02 Score=22.17 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=21.9
Q ss_pred cccEEEEEecCHHHHHHHHHhCCCcc
Q 018875 147 SRGFGFVIFDSEEVVDEMLSKGNMID 172 (349)
Q Consensus 147 ~~G~afV~f~~~~~a~~Ai~~l~~~~ 172 (349)
.+||-|||=.+++++.+|++.+....
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 67899999999999999998766554
No 359
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=27.48 E-value=19 Score=25.10 Aligned_cols=38 Identities=24% Similarity=0.175 Sum_probs=25.0
Q ss_pred HHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhC
Q 018875 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (349)
Q Consensus 121 e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 168 (349)
++|++.|..+....++ ++- .+|..|++.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~--vkL--------~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKI--VKL--------KAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhh--hhh--------hhccCCCCHHHHHHHHHHh
Confidence 5777777654333222 111 6899999999998888764
No 360
>PF03337 Pox_F12L: Poxvirus F12L protein; InterPro: IPR005005 The vaccinia virus F12L gene encodes a 65 kDa protein that is expressed late during infection and is important for plaque formation, EEV production and virulence. The F12L protein is located on intracellular enveloped virus (IEV) particles, but is absent from immature virions, intracellular mature virus and cell-associated enveloped virus. F12L shows co-localization with endosomal compartments and microtubules and appears to play a role in the the transport of IEV particles to the cell surface on microtubules [].; GO: 0016032 viral reproduction
Probab=27.37 E-value=2.4e+02 Score=28.94 Aligned_cols=81 Identities=20% Similarity=0.328 Sum_probs=40.0
Q ss_pred EEcCCCcCC--cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHccCccCCcEEEEeecCC-CC
Q 018875 22 FIGGLPKDT--TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA-DPSVVDKVIEDTHIINGKQVEIKRTIP-KG 97 (349)
Q Consensus 22 fV~nLp~~~--te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~-~~~~a~~al~~~~~~~g~~i~v~~~~~-~~ 97 (349)
|++.++.+. ..++|..++..+ + .++.+.+.+ . |-.+|.+. +.+.++..+. -..|+|--.++ .+
T Consensus 2 ~~~~~~~~~~~~~~~v~~~l~~~-~-~sivlar~~-~----Gkgviv~~~Nl~~v~s~~~------~~~l~vvgit~~v~ 68 (651)
T PF03337_consen 2 FLGSLCSTNNDSTESVISTLREY-K-YSIVLARTR-D----GKGVIVYANNLEDVKSMID------LSSLEVVGITKYVE 68 (651)
T ss_pred hhhhccCCCcccchhhhHHHhcC-c-ceEEEEecC-C----CCEEEEECCcHHHHHHHhc------CceEEEEeeccccc
Confidence 344555554 366788888887 3 234555543 2 33445554 4555555543 23344443333 11
Q ss_pred CCCCCCCCCCeEEEcCCC
Q 018875 98 SGQSKDFKTKKIFVGGIP 115 (349)
Q Consensus 98 ~~~~~~~~~~~l~V~nL~ 115 (349)
.......+..+|||..+.
T Consensus 69 p~~~p~~p~~~l~i~~~d 86 (651)
T PF03337_consen 69 PVPPPPAPINRLFIDEID 86 (651)
T ss_pred cCCCCcccccceEEeecc
Confidence 222223345567776654
No 361
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=27.32 E-value=2.7e+02 Score=20.96 Aligned_cols=44 Identities=14% Similarity=-0.034 Sum_probs=31.1
Q ss_pred HHHHHHhhccCc-eEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcc
Q 018875 121 DELKNFFSKYGK-VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (349)
Q Consensus 121 e~l~~~F~~~G~-v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~ 172 (349)
++|.+.+++-+. ++.+....+ .-.|.|++.++-.+|.+.|+...
T Consensus 49 ~~v~~~L~~~~I~~k~i~~~~~--------~llirf~~~~~Ql~Ak~~L~~~L 93 (101)
T PF13721_consen 49 FQVEQALKAAGIAVKSIEQEGD--------SLLIRFDSTDQQLKAKDVLSKAL 93 (101)
T ss_pred HHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHc
Confidence 588888888764 344444332 67899999998888887765543
No 362
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=27.09 E-value=2e+02 Score=28.61 Aligned_cols=50 Identities=18% Similarity=0.066 Sum_probs=36.0
Q ss_pred HHHHHHHhh----ccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 120 EDELKNFFS----KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 120 ~e~l~~~F~----~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
--+|..+|. .+|.|+++++....... .....++.|.+.++|.+|+..+..
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~-~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPP-VARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCc-ceEEEEEECCCHHHHHHHHHHHHh
Confidence 346667665 68899998877664432 334668899999999999887543
No 363
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=27.05 E-value=1.3e+02 Score=21.23 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=27.6
Q ss_pred HHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 125 NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 125 ~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
..+.+||.|..+.--.. |+ |.|-+.+++++.+++|....+
T Consensus 15 r~L~kfG~i~Y~Skk~k--------Yv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 15 RQLRKFGDIHYVSKKMK--------YV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred HhHhhcccEEEEECCcc--------EE-EEEECHHHHHHHHHHHhcCCC
Confidence 35678998876644322 43 467788889998888777654
No 364
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=27.03 E-value=53 Score=19.77 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=14.9
Q ss_pred CCcHHHHHHHHhcCCCee
Q 018875 29 DTTYATFNKHFGKYGDIT 46 (349)
Q Consensus 29 ~~te~~l~~~F~~~G~i~ 46 (349)
++++++|++++..++.+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 588999999999987653
No 365
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=26.85 E-value=2.7e+02 Score=20.70 Aligned_cols=66 Identities=8% Similarity=0.113 Sum_probs=48.0
Q ss_pred CCCcCCcHHHHHHHH----------hcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEEeecC
Q 018875 25 GLPKDTTYATFNKHF----------GKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTI 94 (349)
Q Consensus 25 nLp~~~te~~l~~~F----------~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~ 94 (349)
+||.+++.+++.++- .+-|.+..++-+.. +...++.++-+|.++..+.|..+..+.-..++|....
T Consensus 10 ~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~~G----~~~n~~Ifdv~d~~eLh~lL~sLPL~p~m~i~VtpL~ 85 (91)
T PF02426_consen 10 NVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRVVG----RYANVSIFDVEDNDELHELLSSLPLFPYMDIEVTPLA 85 (91)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEecC----CcceEEEEECCCHHHHHHHHHhCCCccceeeeEEecc
Confidence 688888888766543 34577777776554 4456888999999999999988777766677775543
No 366
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.45 E-value=71 Score=21.78 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=24.1
Q ss_pred EEeCCHHHHHHHHHccCccCCcEEEEeecC
Q 018875 65 ITYADPSVVDKVIEDTHIINGKQVEIKRTI 94 (349)
Q Consensus 65 Vef~~~~~a~~al~~~~~~~g~~i~v~~~~ 94 (349)
.+|.+.++++.||..........+.+..+.
T Consensus 8 ~~F~~~~e~k~av~~yai~~~~~~~v~ksd 37 (67)
T PF03108_consen 8 QTFPSKEEFKEAVREYAIKNGFEFKVKKSD 37 (67)
T ss_pred CEECCHHHHHHHHHHHHHhcCcEEEEeccC
Confidence 479999999999997766777777777664
No 367
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=26.39 E-value=4e+02 Score=24.94 Aligned_cols=63 Identities=17% Similarity=0.396 Sum_probs=36.8
Q ss_pred cceEEEEEeCCHHHHHHHHHccCccCC-cEEEEeecCCCC-CCCCCCCCCCeEEE--cC--CCCCCCHH
Q 018875 59 PRGFGFITYADPSVVDKVIEDTHIING-KQVEIKRTIPKG-SGQSKDFKTKKIFV--GG--IPSSVSED 121 (349)
Q Consensus 59 ~kG~afVef~~~~~a~~al~~~~~~~g-~~i~v~~~~~~~-~~~~~~~~~~~l~V--~n--L~~~~t~e 121 (349)
...|-|..|.+++++.++|++...-.+ ..|......+.. ...........+.| .+ +||+...+
T Consensus 192 ~~~yd~~~f~~~~~~~~~i~~k~~~~~~~rlvA~~~w~~~~~~~~~~~~~~~~~i~~~~~~~~Wn~~~~ 260 (352)
T PF09848_consen 192 DENYDFRVFDSPEEMKEAIKEKNKEGGLSRLVAGYCWPWKDKGSKKDKSVNDIYIEEGDWKMPWNSENK 260 (352)
T ss_pred CCceeEEEECCHHHHHHHHHHHhcccCCceEEEecccccccccCCCCCCCCCeEEecCceecCCCCCCC
Confidence 468999999999999999996553333 233333333333 12223334455666 32 56665554
No 368
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=26.09 E-value=2.4e+02 Score=24.94 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcc
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKY 130 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~ 130 (349)
.+.|.|||+.++.+.|.++++.+
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~ 118 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKP 118 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccC
Confidence 58899999999999999999743
No 369
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.08 E-value=1.6e+02 Score=23.87 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=35.7
Q ss_pred CCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhC
Q 018875 113 GIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (349)
Q Consensus 113 nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 168 (349)
.|+..+.+|-|+++.+-+|.|.+.. -. --.+.|-+.+.+.+||+.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~---------D~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EY---------DLVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ec---------cEEEEeccHHHHHHHHHHH
Confidence 4778889999999999999886654 11 1356788999999999864
No 370
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=26.02 E-value=1.3e+02 Score=24.63 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=34.5
Q ss_pred ceEEEcCCC-cCCcHHHHHHHHhcC-CCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 19 GKIFIGGLP-KDTTYATFNKHFGKY-GDI-TDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 19 ~~lfV~nLp-~~~te~~l~~~F~~~-G~i-~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
..+|+++|- ...+-++|++++... .+. .+++....+ .-..+.|+|.-+.+|..-|..
T Consensus 5 fla~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~----~~~sv~V~f~ipreaa~~Lr~ 64 (149)
T PF13820_consen 5 FLAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVE----PWNSVRVTFSIPREAATRLRQ 64 (149)
T ss_pred EEEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccc----cCceEEEEEechHHHHHHHHH
Confidence 456778876 224556677777554 222 223332222 224799999999988887763
No 371
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.98 E-value=92 Score=31.18 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=32.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----CceEEEEEEec
Q 018875 103 DFKTKKIFVGGIPSS-VSEDELKNFFSKY----GKVLEHQIIRD 141 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~-~t~e~l~~~F~~~----G~v~~v~i~~~ 141 (349)
...+++|-|-||.|+ +..++|.-+|..| |.|..|.|...
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 446789999999994 7889999988876 58889988765
No 372
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=25.90 E-value=21 Score=24.91 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=20.8
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcC
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKY 42 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~ 42 (349)
..+++|||+.||..|-+++=..+++.+
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k~~ 51 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYKSL 51 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHHHH
Confidence 467899999999998777766665543
No 373
>PRK10905 cell division protein DamX; Validated
Probab=25.87 E-value=1.4e+02 Score=27.64 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=36.3
Q ss_pred EEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEE--EeCCHHHHHHHHHccC
Q 018875 22 FIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFI--TYADPSVVDKVIEDTH 81 (349)
Q Consensus 22 fV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afV--ef~~~~~a~~al~~~~ 81 (349)
|+=.|..-.+++.|.+|..+++ +....+......++. -|..+ .|.+.++|++|++.+.
T Consensus 248 YTLQL~A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 248 YTLQLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred eEEEEEecCCHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCC
Confidence 3334444557788888888874 454555544323322 24333 5999999999999654
No 374
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=25.87 E-value=1.2e+02 Score=22.21 Aligned_cols=48 Identities=13% Similarity=0.246 Sum_probs=28.9
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeC
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA 68 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~ 68 (349)
..-|||++++..+-|. |-+...++-+--++.|+...++ ..||+|-..-
T Consensus 25 ~~GVyVg~~s~rVRe~-lW~~v~~~~~~G~a~m~~~~~n--eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRER-LWERVTEWIGDGSAVMVWSDNN--EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHH-HHHHHHhhCCCccEEEEEccCC--CCCEEEEEeC
Confidence 4469999998887664 4444444323334445544322 6689988773
No 375
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.79 E-value=2.2e+02 Score=29.88 Aligned_cols=155 Identities=16% Similarity=0.200 Sum_probs=77.4
Q ss_pred EcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCC--------cEEEEeecC
Q 018875 23 IGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIING--------KQVEIKRTI 94 (349)
Q Consensus 23 V~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g--------~~i~v~~~~ 94 (349)
+.|.|+.+|.+++.+.++.|-++. ++.-+..++.+..+.+..-..+|++++++...+.. .+|++..-.
T Consensus 629 is~~~klltke~f~ksL~~F~P~a----LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~gi 704 (952)
T KOG0735|consen 629 ISNGPKLLTKELFEKSLKDFVPLA----LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGI 704 (952)
T ss_pred hccCcccchHHHHHHHHHhcChHH----hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccce
Confidence 456677889999999998886643 12212223445666677778888888885432222 222221110
Q ss_pred -----CCCCC------CCCCCCCCeEEEcCC---C--CCCCHHHHHHHhhccCceEEEEEEecCCCCC-c-ccEEEEEec
Q 018875 95 -----PKGSG------QSKDFKTKKIFVGGI---P--SSVSEDELKNFFSKYGKVLEHQIIRDHETNR-S-RGFGFVIFD 156 (349)
Q Consensus 95 -----~~~~~------~~~~~~~~~l~V~nL---~--~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~-~-~G~afV~f~ 156 (349)
+-.-+ ......-+.|-|++- + --.+|+.++++|++.-..+-|.+..|...-. + +|.- -+=.
T Consensus 705 LLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-sTGV 783 (952)
T KOG0735|consen 705 LLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-STGV 783 (952)
T ss_pred EEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-CCCc
Confidence 00000 001112223444331 1 2468999999999875555555544421100 0 0000 0001
Q ss_pred CHHHHHHHHHhCCCcc-cCCeEEEEEe
Q 018875 157 SEEVVDEMLSKGNMID-MAGTQVEIKK 182 (349)
Q Consensus 157 ~~~~a~~Ai~~l~~~~-~~g~~i~v~~ 182 (349)
+...+.+.+.+|++.+ +++-.|-..-
T Consensus 784 TDRVVNQlLTelDG~Egl~GV~i~aaT 810 (952)
T KOG0735|consen 784 TDRVVNQLLTELDGAEGLDGVYILAAT 810 (952)
T ss_pred hHHHHHHHHHhhccccccceEEEEEec
Confidence 2445566677788876 4444444333
No 376
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=25.70 E-value=1.9e+02 Score=25.84 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCC-CCCCCeEEEcCCCCCCCHHHHHHHhh
Q 018875 68 ADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSK-DFKTKKIFVGGIPSSVSEDELKNFFS 128 (349)
Q Consensus 68 ~~~~~a~~al~~~~~~~g~~i~v~~~~~~~~~~~~-~~~~~~l~V~nL~~~~t~e~l~~~F~ 128 (349)
+...+..+.+++... ....++|-........... ......++|+|||+.++.+-|.+++.
T Consensus 59 E~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 59 EIDPDLAKHLKERFA-SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp ESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred cCcHhHHHHHHHHhh-hcccceeeecchhccccHHhhcCCceEEEEEecccchHHHHHHHhh
Confidence 333344444443222 2334555444433222221 12456789999999999999999987
No 377
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=25.51 E-value=1.2e+02 Score=27.87 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=19.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 018875 108 KIFVGGIPSSVSEDELKNFFSK 129 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~ 129 (349)
.+.|.|||+.++...|..+++.
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4788999999999999988865
No 378
>PRK00110 hypothetical protein; Validated
Probab=25.31 E-value=1.3e+02 Score=26.77 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=26.6
Q ss_pred eEEEcCCCcC--CcHHHHHHHHhcCCC-e---eEEEEeecCCCCCcceEEEEEeC
Q 018875 20 KIFIGGLPKD--TTYATFNKHFGKYGD-I---TDSVIMKDRYTGQPRGFGFITYA 68 (349)
Q Consensus 20 ~lfV~nLp~~--~te~~l~~~F~~~G~-i---~~~~i~~~~~~g~~kG~afVef~ 68 (349)
.|.|--|..+ -|..+|+.+|++++- + -+|..+.++ .+.|+|.
T Consensus 96 aiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~-------kG~i~~~ 143 (245)
T PRK00110 96 AIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDR-------KGVIVIE 143 (245)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEecc-------ceEEEeC
Confidence 4555555433 478899999999843 3 245666665 3566665
No 379
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=24.81 E-value=3.1e+02 Score=21.34 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 116 SSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 116 ~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
..+++++|.-+.++.+. +.+.|.+||++.++
T Consensus 73 ~~i~~edI~lv~~q~gv------------------------s~~~A~~AL~~~~g 103 (115)
T PRK06369 73 VEIPEEDIELVAEQTGV------------------------SEEEARKALEEANG 103 (115)
T ss_pred CCCCHHHHHHHHHHHCc------------------------CHHHHHHHHHHcCC
Confidence 46899999999888652 57889999987554
No 380
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=24.44 E-value=1.5e+02 Score=26.68 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=19.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSK 129 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~ 129 (349)
..+.|.|||+.++.+-|..++..
T Consensus 106 ~~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 106 PLKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred cceEEEeCCccchHHHHHHHHhc
Confidence 46789999999999989888864
No 381
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=24.31 E-value=4e+02 Score=21.89 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=37.7
Q ss_pred EEEEEeCCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHH--HhhccCceEEEEEE
Q 018875 62 FGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKN--FFSKYGKVLEHQII 139 (349)
Q Consensus 62 ~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~--~F~~~G~v~~v~i~ 139 (349)
-.||.|+++++|.++++....+ +.|.|-..... +.++....++ .++++|++. .+...|.-..++++
T Consensus 81 ~vlvl~~~~~da~~l~~~g~~i--~~iNiG~m~~~--------~g~~~i~~~v--~l~~ed~~~l~~l~~~Gv~v~~q~v 148 (158)
T PRK09756 81 KIFLICRTPQTVRKLVEGGIDL--KDVNVGNMHFS--------EGKKQISSKV--YVDDQDLADLRFIKQRGVNVFIQDV 148 (158)
T ss_pred eEEEEECCHHHHHHHHHcCCCC--CEEEECCCcCC--------CCCEEEecce--eeCHHHHHHHHHHHHcCCEEEEEEC
Confidence 5899999999999999844332 34444332111 2334444443 446666554 34445655555554
Q ss_pred e
Q 018875 140 R 140 (349)
Q Consensus 140 ~ 140 (349)
.
T Consensus 149 P 149 (158)
T PRK09756 149 P 149 (158)
T ss_pred c
Confidence 4
No 382
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=24.15 E-value=1.8e+02 Score=22.13 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=28.0
Q ss_pred HHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHH
Q 018875 120 EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 120 ~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 166 (349)
+.+|.+.+...| |.+..|..+..++ .=|++++..+.+.+.+++.
T Consensus 25 WPEv~~~l~~~G-i~~ysIf~~g~~~--~LF~~~E~~~~~~~~~~l~ 68 (106)
T PF05336_consen 25 WPEVLAALREAG-IRNYSIFRDGDTG--RLFMYMETDDFDADMAALA 68 (106)
T ss_dssp -HHHHHHHHHCT-EEEEEEEEETTTT--EEEEEEEECT-CHHHHHGG
T ss_pred CHHHHHHHHHCC-CeEEEEEEeCCCC--EEEEEEEecChhhHHHHcc
Confidence 567777778776 6667777664433 3388999988555555544
No 383
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=24.14 E-value=1.4e+02 Score=27.01 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=18.3
Q ss_pred eEEEcCCCcCCcHHHHHHHHhcCC
Q 018875 20 KIFIGGLPKDTTYATFNKHFGKYG 43 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~~~G 43 (349)
.--|..||.++-+++|+..|+.+.
T Consensus 49 V~~v~~v~~~~v~~Ql~av~~D~~ 72 (263)
T COG0351 49 VHGVHPVPPEFVEAQLDAVFSDIP 72 (263)
T ss_pred eeeEEeCCHHHHHHHHHHHhhcCC
Confidence 335667888888888888888873
No 384
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=24.06 E-value=3.4e+02 Score=20.87 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=28.2
Q ss_pred CcCCcHHHHHHHHhc-CCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHH
Q 018875 27 PKDTTYATFNKHFGK-YGDITDSVIMKDRY----TGQPRGFGFITYADPSVVD 74 (349)
Q Consensus 27 p~~~te~~l~~~F~~-~G~i~~~~i~~~~~----~g~~kG~afVef~~~~~a~ 74 (349)
..+-+.++|++.+.+ ++.-.++.++.... .+++++||.| |.|.+.|.
T Consensus 29 ~~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~ 80 (107)
T COG2004 29 SPTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAK 80 (107)
T ss_pred CCCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHH
Confidence 356788888888855 44434444444433 3567777776 55655544
No 385
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=23.97 E-value=3.2e+02 Score=25.21 Aligned_cols=49 Identities=4% Similarity=0.058 Sum_probs=32.2
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
.++...+||+..=+.+...+.+++....+-.|++ |+|.+.|++.+-+++
T Consensus 56 ~~~v~i~vyL~~~~~~~~~~~v~~~i~~~~gV~~-----------------v~~~sre~~l~~L~~ 104 (297)
T COG2177 56 ESQVEITVYLQIDADQDDAALVREKIEGIPGVKS-----------------VRFISREEALKELQP 104 (297)
T ss_pred hccceEEEEEecCCChHHHHHHHHHHhcCCCcce-----------------EEEeCHHHHHHHHHH
Confidence 4456677888755555555567777777655554 677777777776663
No 386
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=23.82 E-value=1.4e+02 Score=25.00 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=20.5
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhc
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGK 41 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~ 41 (349)
....-+|.|.-=|..++-++|.++|-+
T Consensus 54 TgHaE~V~V~yDp~~isy~~LL~~ff~ 80 (174)
T COG0225 54 TGHAEAVEVTYDPKVISYEELLEVFFE 80 (174)
T ss_pred CCceEEEEEEeCCccccHHHHHHHHhe
Confidence 344556888777888999999998744
No 387
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=23.77 E-value=1.9e+02 Score=25.80 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=37.8
Q ss_pred EEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 22 FIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 22 fV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
.|-|++.-.+.+.|..+-..+-.+..|+|+.-..+-.+....|....+++.+..|.-++
T Consensus 7 cvpNfSEG~~~~~ie~i~a~~~~~~~v~ildve~danhNRsViT~vgdp~~~~~A~f~~ 65 (302)
T COG3643 7 CVPNFSEGRDLEKIEKIVAAAKSIPTVKILDVEMDANHNRSVITLVGDPSKVVNAAFAL 65 (302)
T ss_pred eccCccccccHHHHHHHHHHHhcCCceEEEEeccCCCCCceEEEEecChHHHHHHHHHH
Confidence 46688888888877777766666666666654433333345666667777776665533
No 388
>COG5584 Predicted small secreted protein [Function unknown]
Probab=23.51 E-value=87 Score=23.45 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCCcCCcHHHHHHHHhcCCCeeEEEEeecC
Q 018875 25 GLPKDTTYATFNKHFGKYGDITDSVIMKDR 54 (349)
Q Consensus 25 nLp~~~te~~l~~~F~~~G~i~~~~i~~~~ 54 (349)
||+.+..-.-+++.|+++++|+-.+|...+
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~p 58 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEP 58 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEec
Confidence 455566666677888888888877777765
No 389
>PF14350 Beta_protein: Beta protein
Probab=23.46 E-value=1.8e+02 Score=27.24 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=27.0
Q ss_pred CCCHHHHHHHhhccC-ceEEEEEEecCCCCCcccEEEEEecCHHHHHHH
Q 018875 117 SVSEDELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164 (349)
Q Consensus 117 ~~t~e~l~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~A 164 (349)
...+++|.++..... ...+|.|+.| +..|.-.+..++..+
T Consensus 136 ~~~~~~i~~i~~~l~~~~~~~~lilD--------~~~i~~~~~~~~~~~ 176 (347)
T PF14350_consen 136 DDFPSEISRILAALGLSPNEVDLILD--------LGDIRDSDESAVAEA 176 (347)
T ss_pred hhHHHHHHHHHHHcCCCccceEEEEE--------CCccCCcchHHHHHH
Confidence 345677888888877 6677888888 666665555544433
No 390
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=23.44 E-value=1.4e+02 Score=31.41 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=37.3
Q ss_pred CcceEEEEEeCCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHH
Q 018875 58 QPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKN 125 (349)
Q Consensus 58 ~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~ 125 (349)
+....|||+|++...|..|.+..+..+-....++++.. .+.|+-.||.....+--++.
T Consensus 303 ~~~~~aFVtf~sr~~A~~~aq~~~~~~~~~w~~~~APe----------P~Di~W~nl~i~~~~~~~~~ 360 (728)
T KOG1134|consen 303 KPLPAAFVTFKSRYGAAVAAQTQQSLNPTKWLTEFAPE----------PRDIYWDNLAISYVERYLRR 360 (728)
T ss_pred CCCceEEEEEEeeHHHHHHHHhhhcCCCCceEEEecCC----------cccceecccccHHHHHHHHH
Confidence 34578999999999999998865555555556666543 33455566655544433333
No 391
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=23.36 E-value=1.6e+02 Score=21.68 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=31.9
Q ss_pred HHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec--CHHHHHHHHHhCCCc
Q 018875 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD--SEEVVDEMLSKGNMI 171 (349)
Q Consensus 121 e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~--~~~~a~~Ai~~l~~~ 171 (349)
-.|++++..+++..+|+...-+.++...+.++|-|+ +.++.++.++.|+..
T Consensus 22 Gal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 22 GALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp THCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred cHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 356777777776666766666666667778888665 445555555555544
No 392
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.24 E-value=1e+02 Score=21.21 Aligned_cols=34 Identities=12% Similarity=0.404 Sum_probs=24.2
Q ss_pred CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEE
Q 018875 30 TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFI 65 (349)
Q Consensus 30 ~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afV 65 (349)
.-+.+|..+|-+.-+|+++.|...+.-. +|-+||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 4566788888888889999988875433 345555
No 393
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=23.16 E-value=6.2e+02 Score=23.63 Aligned_cols=117 Identities=13% Similarity=0.198 Sum_probs=58.7
Q ss_pred ceEEEc---CCCcCCcHHHHHHH----HhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCcc-CCcEEEE
Q 018875 19 GKIFIG---GLPKDTTYATFNKH----FGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHII-NGKQVEI 90 (349)
Q Consensus 19 ~~lfV~---nLp~~~te~~l~~~----F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~-~g~~i~v 90 (349)
.+|-|. |.+++-+-|.|+.. +++||...+++|.+.-...+.-|.+.++..-... ++..+.+ .++..+|
T Consensus 112 ~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~v~rRG~yP~GGGeV~~~i~p~~~----l~~i~l~~~G~i~~i 187 (326)
T TIGR03399 112 SRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGFYPRGGGEVRLRVEPVKK----LKPLELEERGELLRV 187 (326)
T ss_pred eEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcCCCCCEEEEEEEccccC----CCceeeecCCceEEE
Confidence 355553 45666666666654 4678887777777754333334444444433211 1111101 1111111
Q ss_pred eecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHH---HHhhccCceEEEEEEecCCCCCcccEEEEEe
Q 018875 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELK---NFFSKYGKVLEHQIIRDHETNRSRGFGFVIF 155 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~---~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f 155 (349)
.-..++.+||.++.+.+++ +++.++....++.+... +...+.|++++.+
T Consensus 188 ---------------~g~~~~~~l~~~va~r~~~~a~~~L~~~~~~~~i~~~~~-~~~~s~G~~i~L~ 239 (326)
T TIGR03399 188 ---------------SGIAHAANLPAHVAERMAKAAREELRKLGLDPEIEIEVL-DKGLGPGSGIVLW 239 (326)
T ss_pred ---------------EEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEec-cCCCCCcEEEEEE
Confidence 1256778899888776654 45555543333333321 4455666665443
No 394
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=23.05 E-value=36 Score=26.56 Aligned_cols=64 Identities=13% Similarity=0.265 Sum_probs=35.2
Q ss_pred CCcCCcHHHHHHHHhcCCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEEe
Q 018875 26 LPKDTTYATFNKHFGKYGD-ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIK 91 (349)
Q Consensus 26 Lp~~~te~~l~~~F~~~G~-i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~ 91 (349)
+....+.++|.++++..+. +..+.-.+.. +-+.-+..+.+..+.+.+++.+++. .+--++|.|.
T Consensus 34 ~~~~~s~~eL~~~l~~~g~~~~~li~t~~~-~~r~L~~~~~~~~~~~~~~~i~~~~-~LikRPivv~ 98 (117)
T COG1393 34 LKTPPSREELKKILSKLGDGVEELINTRGT-TYRELNLDKEDLSDEELIEALLENP-SLIKRPIVVD 98 (117)
T ss_pred ecCCCCHHHHHHHHHHcCccHHHHHHhccc-hHHHcCCcccccChHHHHHHHHhCh-hhccCCeEEe
Confidence 4456788888888888764 2211111111 1111223445666777777766655 5666666664
No 395
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=23.03 E-value=1.8e+02 Score=21.84 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=25.1
Q ss_pred HHHHhhccCc--eE---EEEEEecCCCCCcccEEEEEecCHHHHHHHHH
Q 018875 123 LKNFFSKYGK--VL---EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 123 l~~~F~~~G~--v~---~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 166 (349)
+...|++||- +. ++..+.. ...+.-...|+|.|.+.|..+..
T Consensus 25 ~~~a~~~~Ggr~LvRGG~v~~lEG--~w~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 25 AKPAIEKFGGRYLVRGGEVETLEG--EWRPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred hHHHHHHhCCeeEeeCCCeeeccC--CCCcccEEEEEcCCHHHHHHHhc
Confidence 4567777762 11 1222222 13334488999999998887654
No 396
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=23.01 E-value=2.4e+02 Score=26.86 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=33.8
Q ss_pred CcHHHHHHHHhcCC-Cee---EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC
Q 018875 30 TTYATFNKHFGKYG-DIT---DSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH 81 (349)
Q Consensus 30 ~te~~l~~~F~~~G-~i~---~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~ 81 (349)
+|..+++++|++-- .|. ....+.|+ +.-+.-+-||++.+.+++.+||+++.
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~l~~lDq-~~lP~~~~~~~~~~~~~v~~aI~~M~ 57 (363)
T PRK05772 3 LTVKEVKELFKPKLLPIIWKDNTLTLLDQ-SLLPFETVYVDLKTVEEVALAIRNMQ 57 (363)
T ss_pred chHHHHHHHhCCCCceEEecCCEEEEEec-CCCCCeEEEEEeCCHHHHHHHHHhCc
Confidence 56778999997631 111 11222232 34455689999999999999999765
No 397
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=22.87 E-value=3.7e+02 Score=24.05 Aligned_cols=80 Identities=9% Similarity=0.145 Sum_probs=42.2
Q ss_pred CCeEEEcCCCCCC--CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh----CCCcccCCeEEE
Q 018875 106 TKKIFVGGIPSSV--SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK----GNMIDMAGTQVE 179 (349)
Q Consensus 106 ~~~l~V~nL~~~~--t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~----l~~~~~~g~~i~ 179 (349)
...|.|+.+...- --+.|+++|+++-.|.+..|+.-+.....+-.=.|.++...+.+..|.. ......++..|.
T Consensus 129 g~~v~lg~p~~~P~~lv~~L~~lf~~~k~V~rAyL~~~~~~~d~~p~LLI~le~~~d~e~ii~~ag~~a~~~l~~d~~ID 208 (246)
T PRK11611 129 GESLLLSEVAEPPAQMIDSLTTLFKTIKPVKRAFLASIKENADAQPNLLIGIEADGDIEEIIQAAGSVATDTLPGDEPID 208 (246)
T ss_pred CCEEEecCCccchHHHHHHHHHHHhhcchHHHHHHHHHhccCCCCCceEEEEecCCCHHHHHHHHhHHHHHhCCCCCcee
Confidence 4456666554433 3477889999999888754433222111111223333322233444443 233445778888
Q ss_pred EEeCCC
Q 018875 180 IKKAEP 185 (349)
Q Consensus 180 v~~a~~ 185 (349)
|.....
T Consensus 209 i~~v~~ 214 (246)
T PRK11611 209 ICQVKE 214 (246)
T ss_pred EEEecC
Confidence 776654
No 398
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=22.73 E-value=3.9e+02 Score=23.92 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=31.4
Q ss_pred CCcCCcHHHHHHHHhcCCCeeEEEEeecCCCC------CcceEEEEEeCCHHHHHHHHHc
Q 018875 26 LPKDTTYATFNKHFGKYGDITDSVIMKDRYTG------QPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 26 Lp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g------~~kG~afVef~~~~~a~~al~~ 79 (349)
||..++++||+.+=+..-+-..+..+..+.+. .+.-+|+|-..-.++..+.+++
T Consensus 72 vp~~~~d~El~~l~~~l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d 131 (247)
T PTZ00136 72 VPSICTDQELQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQD 131 (247)
T ss_pred cCCcCCHHHHHHHHHhCcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHH
Confidence 68889999988654433111223333333221 1223889988888877777774
No 399
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=22.67 E-value=1e+02 Score=28.95 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHhhcc-CceEEEEEEe
Q 018875 115 PSSVSEDELKNFFSKY-GKVLEHQIIR 140 (349)
Q Consensus 115 ~~~~t~e~l~~~F~~~-G~v~~v~i~~ 140 (349)
...+|.++|+++|++| -.-..|+|+.
T Consensus 254 ~~~~t~~~i~~~y~~~Y~~epfVrv~~ 280 (349)
T COG0002 254 KDLVTLEELHAAYEEFYAGEPFVRVVP 280 (349)
T ss_pred CCCCCHHHHHHHHHHHhCCCCeEEEec
Confidence 3448999999999875 3334455555
No 400
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=22.58 E-value=6.6e+02 Score=23.70 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=28.1
Q ss_pred CCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 29 DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 29 ~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
.+++++|+.++++|.......+++.. .+.++...|+..
T Consensus 198 ~~d~~~ir~iL~Ey~I~nA~V~Ir~d-------------vTlDd~id~l~~ 235 (365)
T COG1163 198 HLDEDTVRAILREYRIHNADVLIRED-------------VTLDDLIDALEG 235 (365)
T ss_pred cCCHHHHHHHHHHhCcccceEEEecC-------------CcHHHHHHHHhh
Confidence 38999999999999876655555554 356777777773
No 401
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=22.31 E-value=2.8e+02 Score=19.31 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 33 ATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 33 ~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
++|++.+.+++ +....|.-.- .+ ++.|+.+.+.++++++++.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG-~G---~~v~~l~~~~~~~~~v~~~ 78 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG-GG---PTVFALCKDEDDAERVAEA 78 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS-SS---SEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC-CC---CeEEEEECCHHHHHHHHHH
Confidence 45666677777 3333443320 11 4788888899988887764
No 402
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=22.25 E-value=1.6e+02 Score=22.11 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.2
Q ss_pred ceEEEEEEecCCCCCcccEEEEEecC
Q 018875 132 KVLEHQIIRDHETNRSRGFGFVIFDS 157 (349)
Q Consensus 132 ~v~~v~i~~~~~~g~~~G~afV~f~~ 157 (349)
+|++|+|.+-...++-+++|-|+|++
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 36777777766667889999999876
No 403
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=22.13 E-value=2.8e+02 Score=27.34 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=42.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceE--EEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeE
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL--EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~--~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~ 177 (349)
.......+.|+|..|.. .--|.|++.+-+...+. .|.|..... ...-.|.+....++|+.+|--..+.+.-
T Consensus 348 ~~~~~~~kaVlVtSL~~-~yye~lr~~Y~~~~t~tGe~V~V~QpSh------e~~Q~~~~~~h~~kAlaEmyLLS~sD~L 420 (476)
T PF03254_consen 348 SSKSQKSKAVLVTSLYS-EYYEKLRNMYWEHPTVTGEVVGVHQPSH------EEYQQFGDNMHNQKALAEMYLLSLSDVL 420 (476)
T ss_pred cCCCCceEEEEEEeCCH-HHHHHHHHHHhcCCCcCCcEEEEECCCC------cccccccccchHHHHHHHHHHHHhccce
Confidence 33445778899998864 34466888776653332 233322211 3344566777778888875544444444
Q ss_pred EEE
Q 018875 178 VEI 180 (349)
Q Consensus 178 i~v 180 (349)
|.-
T Consensus 421 VTS 423 (476)
T PF03254_consen 421 VTS 423 (476)
T ss_pred Eec
Confidence 443
No 404
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=22.08 E-value=67 Score=32.37 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=48.1
Q ss_pred CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCCCeE
Q 018875 30 TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKI 109 (349)
Q Consensus 30 ~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~l 109 (349)
|.-..|.++|.+.|+|.+-.|.+.- +.|...|..-++|++++.++++....-...+|-....++. .+..+
T Consensus 708 we~p~vF~Wl~~aG~v~~~em~RTf----N~GiGmVlvVs~e~ve~v~kel~~~~e~~~~iG~vv~r~~------~s~~~ 777 (788)
T KOG0237|consen 708 WELPPVFKWLQQAGNVPDSEMARTF----NCGIGMVLVVSPENVERVLKELTNHGEEAYRIGEVVNREG------VSPQC 777 (788)
T ss_pred ccCcHHHHHHHHcCCCCHHHHHHHh----ccccceEEEEcHHHHHHHHHHHhhCCeEEEEEEeEeecCC------CCcce
Confidence 3444566777777888776666654 4578889999999999999977655444444443332211 23455
Q ss_pred EEcCCC
Q 018875 110 FVGGIP 115 (349)
Q Consensus 110 ~V~nL~ 115 (349)
.|.|+.
T Consensus 778 ~~~N~~ 783 (788)
T KOG0237|consen 778 VVVNLE 783 (788)
T ss_pred EEeehh
Confidence 666654
No 405
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=21.72 E-value=3.8e+02 Score=20.63 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=35.9
Q ss_pred EEEcCCCcCCcHHHHHHHHhc-CC---CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 21 IFIGGLPKDTTYATFNKHFGK-YG---DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 21 lfV~nLp~~~te~~l~~~F~~-~G---~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
.+.-.+...|.-.+|+++++. |- .-.++.+... -..|+.|.+.+++++.+..+
T Consensus 49 ~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF~~d~-------~~~f~~F~~~~~~k~vv~~l 105 (108)
T cd01201 49 SYCEELHGKWPFSEIRAIFSRRYLLQNTALELFLASR-------TSIFFAFPDQNAVKKVVYAL 105 (108)
T ss_pred eccccccceeeHHHHHHHHHHhhhcccceEEEEEeCC-------ceEEEEeCcHHHHHHHHhhc
Confidence 455667778999999999854 31 1223333321 35899999999999888754
No 406
>PRK02302 hypothetical protein; Provisional
Probab=21.46 E-value=1.9e+02 Score=21.41 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=27.2
Q ss_pred HHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 125 NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 125 ~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
..+.+||.|..+.-... |+ |.|.+.+++++.+++|....+
T Consensus 21 r~LrkfG~I~Y~Skk~k--------Yv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 21 RKLSKYGDIVYHSKRSR--------YL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HHHhhcCcEEEEecccc--------EE-EEEECHHHHHHHHHHHhcCCC
Confidence 34578998876654332 43 567788888888888776654
No 407
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=21.40 E-value=1.3e+02 Score=29.42 Aligned_cols=62 Identities=15% Similarity=0.290 Sum_probs=37.8
Q ss_pred CCcCCcHHHHHHHHhcC--CCeeEEEEeecCCCCCcceEEEEEeCCHH----HHHHHHHccCccCCcEEEEeecC
Q 018875 26 LPKDTTYATFNKHFGKY--GDITDSVIMKDRYTGQPRGFGFITYADPS----VVDKVIEDTHIINGKQVEIKRTI 94 (349)
Q Consensus 26 Lp~~~te~~l~~~F~~~--G~i~~~~i~~~~~~g~~kG~afVef~~~~----~a~~al~~~~~~~g~~i~v~~~~ 94 (349)
||-|-....|.+++... ..|+.+.|.-. |=+|-.+.-++ ..+.|+++.++-.|++|.|..++
T Consensus 203 lPVDSEHsAIfQ~L~g~~~~~v~kiiLTAS-------GGpFr~~~~e~l~~vT~~~ALkHP~W~MG~KITIDSAT 270 (454)
T PLN02696 203 LPADSEHSAIFQCIQGLPEGGLRRIILTAS-------GGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSAT 270 (454)
T ss_pred eecchhhHHHHHHccCCCccCccEEEEECC-------chhccCCCHHHHhCCCHHHHhhCCCCcCCCeeeeehHh
Confidence 45555556666666543 33555555443 22454443333 35568888889999999998765
No 408
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=21.08 E-value=1.8e+02 Score=21.18 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=21.7
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCC
Q 018875 44 DITDSVIMKDRYTGQPRGFGFITYAD 69 (349)
Q Consensus 44 ~i~~~~i~~~~~~g~~kG~afVef~~ 69 (349)
+|++|+|..-...++.++||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888888877678999999999987
No 409
>PF11532 HnRNP_M: Heterogeneous nuclear ribonucleoprotein M; InterPro: IPR024666 Heterogeneous nuclear ribonucleoproteins (hnRNPs) bind directly to nascent RNA polymerase II transcripts and play an important role in both transcript-specific packaging and alternative splicing of pre-mRNAs []. hnRNP M proteins are an abundant group of hnRNPs that have been shown to bind avidly to poly(G) and poly(U) RNA homopolymers []. hnRNP M family members are able to induce exon skipping and promote exon inclusion, suggesting that the proteins may broadly contribute to the fidelity of splice site recognition and alternative splicing regulation []. This entry represents the N-terminal PY nuclear localisation signal of heterogeneous nuclear ribonucleoprotein M [].; PDB: 2OT8_C.
Probab=20.95 E-value=38 Score=19.22 Aligned_cols=10 Identities=50% Similarity=1.188 Sum_probs=1.6
Q ss_pred CCCCCCcCCC
Q 018875 338 SGSSRYHPYA 347 (349)
Q Consensus 338 ~~~~~~~~~~ 347 (349)
+++.||+||.
T Consensus 16 rgg~rfEPY~ 25 (30)
T PF11532_consen 16 RGGNRFEPYA 25 (30)
T ss_dssp -------SS-
T ss_pred cCCccccccc
Confidence 3567888884
No 410
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=20.95 E-value=1.3e+02 Score=28.43 Aligned_cols=49 Identities=8% Similarity=0.211 Sum_probs=34.6
Q ss_pred CCceEEEcCC--C--cCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 018875 17 SPGKIFIGGL--P--KDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKV 76 (349)
Q Consensus 17 ~~~~lfV~nL--p--~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~a 76 (349)
....|||.|= | .-++.++|+.+++.... .+.++.|. ||++|.. +++...
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvDE--------AY~eF~~-~~~~~l 197 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVIDE--------AYIEFSP-ESSLEL 197 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEeC--------chhhcCC-chhhhh
Confidence 4667888754 3 23799999999988766 45556664 9999999 433333
No 411
>PRK02886 hypothetical protein; Provisional
Probab=20.92 E-value=2e+02 Score=21.21 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=27.1
Q ss_pred HHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 125 NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 125 ~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
..+.+||.|..+.-... |+ |.|.+.+++++.+++|....+
T Consensus 19 r~LrkyG~I~Y~Skr~k--------Yv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 19 KQLRKFGNVHYVSKRLK--------YA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HHHhhcCcEEEEecccc--------EE-EEEECHHHHHHHHHHHhcCCC
Confidence 34578998876654332 43 557788888888888776654
No 412
>PF10574 UPF0552: Uncharacterised protein family UPF0552; InterPro: IPR018889 This family of proteins has no known function.
Probab=20.89 E-value=5.7e+02 Score=22.38 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=57.1
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeE-------EEEeecCCCCCcceEE--EEEeCCHHHHHHHHHccCccCC
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITD-------SVIMKDRYTGQPRGFG--FITYADPSVVDKVIEDTHIING 85 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~-------~~i~~~~~~g~~kG~a--fVef~~~~~a~~al~~~~~~~g 85 (349)
+....-|...+||..|+.+. +-+--|.|.+ ..+|.+. +++...|. +|+|.. |++......+
T Consensus 9 aL~n~~v~s~~~~g~W~p~~---~q~G~GvilEG~l~~~sRH~I~D~-~~~k~Ry~vl~i~~~~------~hrR~fd~~G 78 (224)
T PF10574_consen 9 ALQNKPVHSSKLPGAWDPEA---HQSGDGVILEGELVDVSRHSITDA-SGQKERYYVLYIRPSR------IHRRKFDAKG 78 (224)
T ss_pred cccCCceeeeecCCCcCHHH---hcCCCeEEEEEEEEeeeEEEEEcC-CCCceEEEEEEEeech------hhhhcccCCC
Confidence 34455677889999999974 2233333332 3344444 23333344 333322 2332223345
Q ss_pred cEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhh
Q 018875 86 KQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFS 128 (349)
Q Consensus 86 ~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~ 128 (349)
..|+.+....+....---..+.+|-..+++..++.++|+.+..
T Consensus 79 ~EIepnfs~T~kVntGyL~SsykveAkg~tDrls~~~L~~~V~ 121 (224)
T PF10574_consen 79 NEIEPNFSDTTKVNTGYLNSSYKVEAKGDTDRLSPEQLKALVN 121 (224)
T ss_pred cCcCCCccceeeeeecccCcccEEEecCCccccCHHHHHHHhC
Confidence 5555544444433333333555677788999999999999884
No 413
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=20.85 E-value=1.7e+02 Score=27.00 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=31.2
Q ss_pred CCCCCCCHHHHHHHhhccCceE-EEEEEecCCCCCcccEEEEEecCHHH------HHHHHHhCCCc
Q 018875 113 GIPSSVSEDELKNFFSKYGKVL-EHQIIRDHETNRSRGFGFVIFDSEEV------VDEMLSKGNMI 171 (349)
Q Consensus 113 nL~~~~t~e~l~~~F~~~G~v~-~v~i~~~~~~g~~~G~afV~f~~~~~------a~~Ai~~l~~~ 171 (349)
+.|-.++++||..+..---++. ...|+.+... +.-.+.|.+|.-..+ |+.+|+.+.+.
T Consensus 242 r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~ 306 (331)
T KOG2014|consen 242 RDPGETSEEDLERLLQIRNELLESETIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKK 306 (331)
T ss_pred CCCccccHHHHHHHHHHHHhhccccccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcC
Confidence 5566788988887665322222 3555555332 233356677765432 35555554443
No 414
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=20.74 E-value=3.4e+02 Score=19.70 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=23.0
Q ss_pred cCCcHHHHHHHHhcC-CC----eeEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 018875 28 KDTTYATFNKHFGKY-GD----ITDSVIMKDRYTGQPRGFGFITYADPSVVDK 75 (349)
Q Consensus 28 ~~~te~~l~~~F~~~-G~----i~~~~i~~~~~~g~~kG~afVef~~~~~a~~ 75 (349)
.+.+..+|++.+... .. |.-..|...--.+++.+||.| |.+.+.+++
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 456777888877543 22 221222222223556677766 566665544
No 415
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=20.38 E-value=99 Score=27.69 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=21.2
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHh
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFG 40 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~ 40 (349)
....++|+|||+.++.+-|..++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 466799999999999999999987
No 416
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=20.19 E-value=4.6e+02 Score=20.98 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=39.4
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEEeecCCCC
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKG 97 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~~~~ 97 (349)
+..|-++| ..+++..|+.++|.+=-.+.-|.+..+. +.+.+...+++.+... . ++|.+-..-...
T Consensus 29 s~~vs~Gn-~~dv~~~d~l~~~~~D~~t~~I~ly~E~------------~~d~~~f~~~~~~a~~-~-KPVv~lk~Grt~ 93 (138)
T PF13607_consen 29 SYVVSVGN-EADVDFADLLEYLAEDPDTRVIVLYLEG------------IGDGRRFLEAARRAAR-R-KPVVVLKAGRTE 93 (138)
T ss_dssp SEEEE-TT--SSS-HHHHHHHHCT-SS--EEEEEES--------------S-HHHHHHHHHHHCC-C-S-EEEEE-----
T ss_pred eEEEEeCc-cccCCHHHHHHHHhcCCCCCEEEEEccC------------CCCHHHHHHHHHHHhc-C-CCEEEEeCCCch
Confidence 34566777 4589999999999774444433333321 4455555555543322 2 666665443221
Q ss_pred CCCCCCCCCCeEEEcCCC-CCCCHHHHHHHhhccCce
Q 018875 98 SGQSKDFKTKKIFVGGIP-SSVSEDELKNFFSKYGKV 133 (349)
Q Consensus 98 ~~~~~~~~~~~l~V~nL~-~~~t~e~l~~~F~~~G~v 133 (349)
.... .-.+.-. ..-+++.+..+|+++|.|
T Consensus 94 ~g~~-------aa~sHTgslag~~~~~~a~~~~aGv~ 123 (138)
T PF13607_consen 94 AGAR-------AAASHTGSLAGDDAVYDAALRQAGVV 123 (138)
T ss_dssp -----------------------HHHHHHHHHHCTEE
T ss_pred hhhh-------hhhccCCcccCcHHHHHHHHHHcCce
Confidence 1111 1111111 123566677889987744
No 417
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=20.16 E-value=4e+02 Score=20.33 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 018875 33 ATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78 (349)
Q Consensus 33 ~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~ 78 (349)
.+|.++++++|.- +-.|..+.. .+.=|+++++.|.++.-++|.
T Consensus 27 PE~~a~lk~agi~-nYSIfLde~--~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAGIR-NYSIFLDEE--ENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcCCc-eeEEEecCC--cccEEEEEEEcChHHHHHHHh
Confidence 3567778887654 444444432 234699999997776666665
No 418
>PF15063 TC1: Thyroid cancer protein 1
Probab=20.06 E-value=12 Score=26.58 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceE
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVL 134 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~ 134 (349)
..++--+.||=.++..+.|+.+|+.-|+.+
T Consensus 24 ~~RKkasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 24 ASRKKASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred HHhhhhhhhhhhccCHHHHHHHHHHccchh
Confidence 344556778888999999999999988653
Done!