Query 018875
Match_columns 349
No_of_seqs 402 out of 2742
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 07:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 5.9E-36 2E-40 257.6 21.6 180 10-190 5-187 (196)
2 4f02_A Polyadenylate-binding p 100.0 8E-36 2.7E-40 260.8 17.4 169 15-187 12-182 (213)
3 2cjk_A Nuclear polyadenylated 100.0 4.1E-36 1.4E-40 252.0 11.0 165 17-186 2-166 (167)
4 3md3_A Nuclear and cytoplasmic 100.0 1.4E-34 4.8E-39 242.0 19.9 164 19-185 1-166 (166)
5 2qfj_A FBP-interacting repress 100.0 6.5E-35 2.2E-39 254.9 18.3 175 16-190 26-209 (216)
6 1b7f_A Protein (SXL-lethal pro 100.0 1.4E-34 4.7E-39 242.8 19.5 164 16-183 1-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 3.5E-34 1.2E-38 239.8 20.3 163 17-183 1-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 3E-33 1E-37 236.0 19.1 165 16-184 1-175 (175)
9 2g4b_A Splicing factor U2AF 65 100.0 6.3E-32 2.2E-36 227.5 18.1 158 17-184 3-172 (172)
10 1fje_B Nucleolin RBD12, protei 100.0 1.1E-32 3.7E-37 233.1 13.0 167 12-186 7-174 (175)
11 2yh0_A Splicing factor U2AF 65 100.0 1.4E-31 4.8E-36 230.5 19.7 167 16-188 2-196 (198)
12 3pgw_A U1-A; protein-RNA compl 100.0 5.2E-31 1.8E-35 239.9 22.0 164 13-184 4-281 (282)
13 3smz_A Protein raver-1, ribonu 100.0 6.4E-31 2.2E-35 239.5 20.5 171 16-188 93-266 (284)
14 3tyt_A Heterogeneous nuclear r 100.0 2E-31 6.7E-36 231.3 15.9 161 16-183 2-204 (205)
15 2adc_A Polypyrimidine tract-bi 100.0 6.5E-31 2.2E-35 232.2 18.3 164 13-186 29-228 (229)
16 2ghp_A U4/U6 snRNA-associated 100.0 9.4E-31 3.2E-35 239.3 17.5 169 16-186 115-291 (292)
17 3sde_A Paraspeckle component 1 100.0 1.5E-30 5.3E-35 234.3 17.3 162 10-188 14-181 (261)
18 2ghp_A U4/U6 snRNA-associated 100.0 2.2E-30 7.5E-35 236.9 17.3 165 11-189 34-200 (292)
19 1qm9_A Polypyrimidine tract-bi 100.0 1.5E-30 5E-35 224.5 14.5 160 17-186 2-197 (198)
20 3smz_A Protein raver-1, ribonu 100.0 1.3E-29 4.3E-34 230.9 20.1 156 16-188 20-177 (284)
21 2kn4_A Immunoglobulin G-bindin 99.9 2.7E-24 9.2E-29 178.7 17.6 141 47-189 2-153 (158)
22 2i2y_A Fusion protein consists 99.9 5.4E-22 1.9E-26 163.3 14.1 126 56-187 9-149 (150)
23 4f25_A Polyadenylate-binding p 99.9 4.8E-22 1.7E-26 156.1 9.9 104 17-122 4-113 (115)
24 3pgw_S U1-70K; protein-RNA com 99.9 4.2E-22 1.4E-26 191.1 10.1 154 35-188 9-184 (437)
25 4fxv_A ELAV-like protein 1; RN 99.8 5.8E-21 2E-25 145.8 10.9 82 104-185 17-98 (99)
26 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.2E-20 4E-25 156.3 12.8 85 103-187 36-120 (156)
27 2lea_A Serine/arginine-rich sp 99.8 2.3E-21 7.7E-26 156.6 8.2 123 62-189 6-130 (135)
28 3s8s_A Histone-lysine N-methyl 99.8 4.8E-20 1.6E-24 143.4 11.3 84 104-187 4-87 (110)
29 2cpz_A CUG triplet repeat RNA- 99.8 6E-20 2E-24 144.1 11.9 91 101-191 20-110 (115)
30 1whw_A Hypothetical protein ri 99.8 1.1E-19 3.6E-24 138.7 12.5 88 103-190 5-92 (99)
31 2cq0_A Eukaryotic translation 99.8 1.1E-19 3.8E-24 139.6 12.8 90 101-190 10-99 (103)
32 2dgo_A Cytotoxic granule-assoc 99.8 4.2E-19 1.4E-23 139.2 15.8 91 100-190 9-99 (115)
33 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.7E-20 2E-24 153.6 10.6 125 65-189 11-155 (165)
34 2dnz_A Probable RNA-binding pr 99.8 1.8E-19 6E-24 136.3 12.0 86 104-189 3-88 (95)
35 4fxv_A ELAV-like protein 1; RN 99.8 9.8E-20 3.4E-24 138.9 10.6 80 16-95 17-98 (99)
36 2dgs_A DAZ-associated protein 99.8 2.1E-19 7.4E-24 137.0 12.5 88 102-190 6-93 (99)
37 2lxi_A RNA-binding protein 10; 99.8 2.1E-20 7.1E-25 140.4 6.7 83 106-188 1-85 (91)
38 2dnm_A SRP46 splicing factor; 99.8 1.2E-19 4.1E-24 139.4 10.7 90 101-190 8-97 (103)
39 2cqd_A RNA-binding region cont 99.8 5.7E-19 2E-23 138.7 14.7 89 100-189 11-99 (116)
40 2cpf_A RNA binding motif prote 99.8 1.8E-19 6.2E-24 137.1 11.3 87 104-190 3-92 (98)
41 1x5u_A Splicing factor 3B subu 99.8 3.2E-19 1.1E-23 137.5 12.8 89 101-189 10-98 (105)
42 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.3E-19 4.4E-24 139.0 10.4 89 103-191 9-97 (102)
43 2do4_A Squamous cell carcinoma 99.8 4.4E-19 1.5E-23 135.5 13.1 88 100-188 11-98 (100)
44 2d9p_A Polyadenylate-binding p 99.8 3.8E-19 1.3E-23 136.6 12.8 89 100-190 9-97 (103)
45 1x4h_A RNA-binding protein 28; 99.8 4.6E-19 1.6E-23 138.0 13.0 90 101-190 10-105 (111)
46 2dnh_A Bruno-like 5, RNA bindi 99.8 5.2E-19 1.8E-23 136.3 12.9 89 101-190 10-101 (105)
47 2cph_A RNA binding motif prote 99.8 4.1E-19 1.4E-23 137.3 12.3 91 100-190 9-101 (107)
48 2dng_A Eukaryotic translation 99.8 6.4E-19 2.2E-23 135.4 13.1 87 101-189 10-96 (103)
49 1x5s_A Cold-inducible RNA-bind 99.8 1.9E-19 6.4E-24 138.1 10.1 88 102-189 8-95 (102)
50 1u6f_A Tcubp1, RNA-binding pro 99.8 7.8E-19 2.7E-23 142.4 14.3 89 101-189 37-125 (139)
51 2cqg_A TDP-43, TAR DNA-binding 99.8 8.9E-19 3E-23 134.5 13.4 91 10-100 7-97 (103)
52 1x5t_A Splicing factor 3B subu 99.8 3.1E-19 1.1E-23 135.2 10.5 86 104-189 3-89 (96)
53 2fy1_A RNA-binding motif prote 99.8 5.8E-19 2E-23 138.7 12.3 86 103-189 4-89 (116)
54 2cqc_A Arginine/serine-rich sp 99.8 5.1E-19 1.7E-23 133.7 11.6 85 101-185 10-94 (95)
55 2lkz_A RNA-binding protein 5; 99.8 7.3E-20 2.5E-24 138.3 6.8 83 103-185 6-94 (95)
56 2dgp_A Bruno-like 4, RNA bindi 99.8 3E-19 1E-23 137.9 10.3 89 101-189 8-99 (106)
57 2e5h_A Zinc finger CCHC-type a 99.8 6.2E-19 2.1E-23 133.0 11.9 84 101-184 11-94 (94)
58 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.2E-19 1.1E-23 132.5 10.1 82 105-186 5-86 (87)
59 3md1_A Nuclear and cytoplasmic 99.8 4.8E-19 1.7E-23 130.4 10.9 82 106-187 1-82 (83)
60 2cpz_A CUG triplet repeat RNA- 99.8 7.1E-19 2.4E-23 137.9 12.4 92 9-100 16-109 (115)
61 2do4_A Squamous cell carcinoma 99.8 1.2E-18 4.1E-23 133.1 13.3 95 3-98 2-98 (100)
62 3p5t_L Cleavage and polyadenyl 99.8 6E-20 2E-24 137.6 5.8 84 107-190 2-87 (90)
63 2lxi_A RNA-binding protein 10; 99.8 1.3E-19 4.5E-24 136.0 7.5 81 18-98 1-85 (91)
64 2cpe_A RNA-binding protein EWS 99.8 4.9E-19 1.7E-23 138.4 10.9 89 101-189 10-106 (113)
65 2cqd_A RNA-binding region cont 99.8 1.3E-18 4.6E-23 136.5 13.3 96 4-99 3-99 (116)
66 2cq3_A RNA-binding protein 9; 99.8 1.7E-18 5.8E-23 132.9 13.6 89 101-191 10-98 (103)
67 1wi8_A EIF-4B, eukaryotic tran 99.8 9.7E-19 3.3E-23 134.6 12.1 86 102-189 11-97 (104)
68 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.8E-19 1.6E-23 131.0 9.9 82 103-184 4-85 (85)
69 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-18 6.3E-23 135.5 13.8 93 8-100 5-99 (115)
70 2dh8_A DAZ-associated protein 99.8 6.1E-19 2.1E-23 136.0 10.8 89 100-189 10-98 (105)
71 1p27_B RNA-binding protein 8A; 99.8 5.8E-19 2E-23 136.3 10.3 86 102-187 19-104 (106)
72 3q2s_C Cleavage and polyadenyl 99.8 5.8E-20 2E-24 161.6 5.0 82 105-186 67-150 (229)
73 2dhg_A TRNA selenocysteine ass 99.8 1.2E-18 4E-23 134.1 11.8 87 102-189 5-93 (104)
74 2do0_A HnRNP M, heterogeneous 99.8 4E-18 1.4E-22 133.3 15.0 87 102-189 11-97 (114)
75 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.7E-18 9.3E-23 131.8 13.4 87 101-189 10-96 (103)
76 1x4c_A Splicing factor, argini 99.8 2.7E-18 9.2E-23 133.1 13.2 80 103-189 12-96 (108)
77 2x1f_A MRNA 3'-END-processing 99.8 9E-19 3.1E-23 132.8 10.2 85 105-189 1-85 (96)
78 2cqg_A TDP-43, TAR DNA-binding 99.8 4.1E-18 1.4E-22 130.8 14.1 88 101-190 10-97 (103)
79 2div_A TRNA selenocysteine ass 99.8 9.9E-19 3.4E-23 133.2 10.5 85 103-187 6-95 (99)
80 1x5u_A Splicing factor 3B subu 99.8 1.4E-18 4.7E-23 133.9 11.4 92 8-99 5-98 (105)
81 4f25_A Polyadenylate-binding p 99.8 8.7E-19 3E-23 137.4 10.4 83 105-189 4-86 (115)
82 3ex7_B RNA-binding protein 8A; 99.8 5.9E-19 2E-23 140.6 9.4 87 102-188 18-104 (126)
83 2kxn_B Transformer-2 protein h 99.8 8.3E-19 2.8E-23 140.4 10.1 87 101-187 41-127 (129)
84 3s8s_A Histone-lysine N-methyl 99.8 1.3E-18 4.5E-23 135.2 10.9 81 15-95 3-85 (110)
85 2jrs_A RNA-binding protein 39; 99.8 1.4E-18 4.7E-23 134.7 11.0 87 101-187 21-107 (108)
86 2cq0_A Eukaryotic translation 99.8 2.2E-18 7.5E-23 132.3 11.9 89 11-99 8-98 (103)
87 1whw_A Hypothetical protein ri 99.8 3E-18 1E-22 130.5 12.3 88 13-100 3-92 (99)
88 2dis_A Unnamed protein product 99.8 2.1E-18 7.2E-23 133.8 11.6 88 103-190 5-96 (109)
89 4a8x_A RNA-binding protein wit 99.8 9.6E-19 3.3E-23 130.2 9.1 83 105-187 3-86 (88)
90 2la6_A RNA-binding protein FUS 99.8 2E-18 6.7E-23 131.6 11.0 85 100-184 7-99 (99)
91 1x4b_A Heterogeneous nuclear r 99.8 9.1E-19 3.1E-23 137.5 9.4 85 104-189 25-109 (116)
92 1x4a_A Splicing factor, argini 99.8 3.7E-18 1.3E-22 132.4 12.7 85 101-188 17-101 (109)
93 2cph_A RNA binding motif prote 99.8 2.5E-18 8.4E-23 132.9 11.7 93 8-100 5-101 (107)
94 2dgs_A DAZ-associated protein 99.8 3.9E-18 1.3E-22 130.0 12.5 89 12-100 4-93 (99)
95 2cqp_A RNA-binding protein 12; 99.8 9.3E-19 3.2E-23 133.1 9.0 85 102-186 11-95 (98)
96 2cqc_A Arginine/serine-rich sp 99.8 2.6E-18 8.8E-23 129.8 11.4 88 8-95 5-94 (95)
97 1x4h_A RNA-binding protein 28; 99.8 4.3E-18 1.5E-22 132.5 12.9 93 8-100 5-105 (111)
98 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-18 4.1E-23 135.5 9.7 86 102-187 22-107 (110)
99 2khc_A Testis-specific RNP-typ 99.8 1.4E-18 4.9E-23 136.8 10.2 83 102-184 36-118 (118)
100 2cpi_A CCR4-NOT transcription 99.8 2.1E-18 7.3E-23 134.3 11.0 89 100-188 9-103 (111)
101 2dnh_A Bruno-like 5, RNA bindi 99.8 4.8E-18 1.7E-22 130.8 12.9 89 10-99 7-100 (105)
102 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-18 4E-23 133.3 9.2 82 103-190 13-96 (105)
103 2hgn_A Heterogeneous nuclear r 99.8 2E-19 6.7E-24 145.4 5.0 122 61-187 2-124 (139)
104 2dgu_A Heterogeneous nuclear r 99.8 6.3E-18 2.2E-22 129.8 13.3 80 103-190 8-87 (103)
105 2ywk_A Putative RNA-binding pr 99.8 1.6E-18 5.6E-23 130.9 9.8 83 102-185 12-94 (95)
106 3ucg_A Polyadenylate-binding p 99.8 2.6E-18 8.9E-23 128.1 10.6 81 105-186 5-85 (89)
107 2dgw_A Probable RNA-binding pr 99.8 3.8E-18 1.3E-22 127.9 11.5 83 102-187 6-88 (91)
108 1p27_B RNA-binding protein 8A; 99.8 2E-18 7E-23 133.2 10.1 91 7-97 12-104 (106)
109 2dh8_A DAZ-associated protein 99.8 2.4E-18 8.4E-23 132.5 10.4 93 8-100 6-99 (105)
110 3s7r_A Heterogeneous nuclear r 99.8 3.4E-18 1.1E-22 127.1 10.8 82 12-93 5-87 (87)
111 3s7r_A Heterogeneous nuclear r 99.8 4E-18 1.4E-22 126.6 11.2 81 102-183 7-87 (87)
112 2dnm_A SRP46 splicing factor; 99.8 2.1E-18 7.2E-23 132.4 9.9 89 11-99 6-96 (103)
113 2fc9_A NCL protein; structure 99.8 5.6E-18 1.9E-22 129.5 12.3 84 102-189 11-94 (101)
114 2dgv_A HnRNP M, heterogeneous 99.8 3.1E-18 1.1E-22 128.6 10.7 84 103-188 5-88 (92)
115 2dgx_A KIAA0430 protein; RRM d 99.8 3E-18 1E-22 129.9 10.6 81 105-188 8-92 (96)
116 2lkz_A RNA-binding protein 5; 99.8 9.1E-19 3.1E-23 132.2 7.5 82 14-95 5-94 (95)
117 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3E-18 1E-22 131.3 10.5 89 12-100 6-96 (102)
118 2rs2_A Musashi-1, RNA-binding 99.8 3.9E-18 1.3E-22 132.4 11.2 86 102-188 21-106 (109)
119 2d9p_A Polyadenylate-binding p 99.8 6.5E-18 2.2E-22 129.7 12.3 91 9-101 6-98 (103)
120 3ns6_A Eukaryotic translation 99.8 4.5E-19 1.5E-23 135.5 5.6 82 105-186 5-93 (100)
121 2rs2_A Musashi-1, RNA-binding 99.8 3.3E-18 1.1E-22 132.8 10.6 92 7-98 14-106 (109)
122 1wez_A HnRNP H', FTP-3, hetero 99.8 2.9E-18 9.8E-23 131.5 10.0 83 102-187 11-93 (102)
123 2dng_A Eukaryotic translation 99.8 8.6E-18 2.9E-22 129.0 12.7 89 10-100 7-97 (103)
124 2e5h_A Zinc finger CCHC-type a 99.8 5.2E-18 1.8E-22 127.9 11.2 86 9-94 7-94 (94)
125 2m2b_A RNA-binding protein 10; 99.8 1.3E-18 4.3E-23 139.8 8.2 89 101-190 18-112 (131)
126 3ulh_A THO complex subunit 4; 99.8 3.9E-18 1.3E-22 131.8 10.6 82 102-184 25-106 (107)
127 2hgl_A HNRPF protein, heteroge 99.8 1.8E-18 6E-23 139.3 8.8 121 61-186 2-125 (136)
128 2cq1_A PTB-like protein L; RRM 99.8 9.5E-18 3.2E-22 128.0 12.4 84 101-190 10-95 (101)
129 2dgp_A Bruno-like 4, RNA bindi 99.8 3.9E-18 1.3E-22 131.6 10.4 90 10-99 5-99 (106)
130 2kt5_A RNA and export factor-b 99.8 6.5E-18 2.2E-22 134.2 12.0 91 102-193 31-121 (124)
131 2dnz_A Probable RNA-binding pr 99.8 5.8E-18 2E-22 127.9 11.1 85 15-99 2-88 (95)
132 1x5s_A Cold-inducible RNA-bind 99.8 4.3E-18 1.5E-22 130.4 10.4 89 12-100 6-96 (102)
133 1x4d_A Matrin 3; structural ge 99.8 2.8E-18 9.4E-23 131.0 9.2 81 103-189 12-95 (102)
134 1s79_A Lupus LA protein; RRM, 99.8 2.6E-18 8.9E-23 131.9 9.0 82 102-185 7-88 (103)
135 2fc8_A NCL protein; structure 99.8 7.4E-18 2.5E-22 129.1 11.6 86 100-188 9-94 (102)
136 1wi8_A EIF-4B, eukaryotic tran 99.8 5.6E-18 1.9E-22 130.3 10.9 89 10-100 7-98 (104)
137 2ek1_A RNA-binding protein 12; 99.8 9.7E-19 3.3E-23 132.2 6.4 81 105-185 14-94 (95)
138 1p1t_A Cleavage stimulation fa 99.8 1.4E-18 4.7E-23 133.7 7.3 85 104-188 6-90 (104)
139 3lqv_A PRE-mRNA branch site pr 99.7 1.1E-18 3.9E-23 136.7 6.8 103 15-132 5-109 (115)
140 2cq4_A RNA binding motif prote 99.7 3.5E-19 1.2E-23 139.5 3.6 83 105-188 24-106 (114)
141 2cq3_A RNA-binding protein 9; 99.7 1.6E-17 5.5E-22 127.5 12.9 91 9-101 6-98 (103)
142 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.5E-17 5.1E-22 127.6 12.7 89 10-100 7-97 (103)
143 2ad9_A Polypyrimidine tract-bi 99.7 4.9E-18 1.7E-22 133.0 10.1 84 102-191 27-112 (119)
144 3n9u_C Cleavage and polyadenyl 99.7 4.8E-18 1.6E-22 140.3 10.5 82 105-186 54-137 (156)
145 2dgt_A RNA-binding protein 30; 99.7 8.6E-18 2.9E-22 126.3 11.0 82 101-190 5-86 (92)
146 1wg5_A Heterogeneous nuclear r 99.7 1.1E-17 3.8E-22 128.7 11.8 84 103-188 12-96 (104)
147 1u6f_A Tcubp1, RNA-binding pro 99.7 1.1E-17 3.9E-22 135.5 12.5 90 11-100 35-126 (139)
148 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.8E-18 2E-22 125.7 9.8 81 16-96 4-86 (87)
149 1wg5_A Heterogeneous nuclear r 99.7 9.5E-18 3.2E-22 129.1 11.3 88 10-98 7-96 (104)
150 1x5t_A Splicing factor 3B subu 99.7 5.5E-18 1.9E-22 128.3 9.8 86 15-100 2-90 (96)
151 2dnq_A RNA-binding protein 4B; 99.7 1E-17 3.5E-22 125.3 11.2 79 103-189 5-83 (90)
152 2cpx_A Hypothetical protein FL 99.7 2.2E-18 7.4E-23 135.1 7.6 89 102-190 21-109 (115)
153 2cqp_A RNA-binding protein 12; 99.7 4.7E-18 1.6E-22 129.2 9.2 87 10-96 7-95 (98)
154 2kxn_B Transformer-2 protein h 99.7 5.9E-18 2E-22 135.4 10.1 88 10-97 38-127 (129)
155 3r27_A HnRNP L, heterogeneous 99.7 6.8E-18 2.3E-22 127.7 9.8 80 102-187 17-98 (100)
156 3md1_A Nuclear and cytoplasmic 99.7 1.1E-17 3.8E-22 123.0 10.7 79 18-96 1-81 (83)
157 1oo0_B CG8781-PA, drosophila Y 99.7 4.7E-18 1.6E-22 132.1 9.1 90 8-97 16-107 (110)
158 1x4e_A RNA binding motif, sing 99.7 1.1E-18 3.8E-23 129.1 5.2 81 104-184 3-83 (85)
159 2cpf_A RNA binding motif prote 99.7 9.1E-18 3.1E-22 127.6 10.4 85 16-100 3-92 (98)
160 2jrs_A RNA-binding protein 39; 99.7 1.3E-17 4.4E-22 129.2 11.4 87 11-97 19-107 (108)
161 1wex_A Hypothetical protein (r 99.7 1.4E-17 4.9E-22 127.8 11.5 83 102-190 11-95 (104)
162 2jwn_A Embryonic polyadenylate 99.7 1.2E-17 3.9E-22 132.7 11.3 83 105-188 35-117 (124)
163 2ywk_A Putative RNA-binding pr 99.7 6.7E-18 2.3E-22 127.5 9.5 85 9-94 7-93 (95)
164 3ex7_B RNA-binding protein 8A; 99.7 4.7E-18 1.6E-22 135.4 9.0 93 7-99 11-105 (126)
165 2cpe_A RNA-binding protein EWS 99.7 1.1E-17 3.9E-22 130.5 11.0 89 11-99 8-106 (113)
166 1wez_A HnRNP H', FTP-3, hetero 99.7 9.5E-18 3.3E-22 128.5 10.3 85 12-98 9-94 (102)
167 2la6_A RNA-binding protein FUS 99.7 1.3E-17 4.6E-22 127.0 11.1 87 8-94 3-99 (99)
168 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.4E-17 4.8E-22 137.7 12.0 86 13-98 34-121 (156)
169 1x4b_A Heterogeneous nuclear r 99.7 6E-18 2.1E-22 132.8 9.3 85 16-100 25-110 (116)
170 1x5o_A RNA binding motif, sing 99.7 1.5E-17 5E-22 130.1 11.4 84 102-186 21-112 (114)
171 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.3E-18 1.1E-22 130.7 7.4 84 102-187 15-99 (100)
172 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7.1E-18 2.4E-22 124.6 9.0 81 14-94 3-85 (85)
173 2do0_A HnRNP M, heterogeneous 99.7 3.9E-17 1.3E-21 127.7 13.5 87 11-98 8-96 (114)
174 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.7E-18 9.2E-23 124.4 6.4 76 107-183 1-76 (77)
175 2wbr_A GW182, gawky, LD47780P; 99.7 7.4E-18 2.5E-22 123.2 8.7 74 105-184 6-79 (89)
176 1why_A Hypothetical protein ri 99.7 1.7E-17 5.7E-22 126.0 11.0 80 102-187 13-94 (97)
177 2dnp_A RNA-binding protein 14; 99.7 1.5E-17 5.3E-22 124.3 10.6 79 102-188 5-83 (90)
178 2div_A TRNA selenocysteine ass 99.7 1.2E-17 4.1E-22 127.2 10.2 84 14-97 5-95 (99)
179 2mss_A Protein (musashi1); RNA 99.7 3E-18 1E-22 123.6 6.4 75 108-183 1-75 (75)
180 2hvz_A Splicing factor, argini 99.7 6.5E-18 2.2E-22 129.2 8.4 93 19-116 1-101 (101)
181 1sjq_A Polypyrimidine tract-bi 99.7 7.7E-18 2.6E-22 128.7 8.6 82 14-101 12-97 (105)
182 2dhg_A TRNA selenocysteine ass 99.7 1.8E-17 6.2E-22 127.4 10.8 87 13-100 4-94 (104)
183 2khc_A Testis-specific RNP-typ 99.7 1.3E-17 4.5E-22 131.2 10.0 80 14-93 36-117 (118)
184 1x4d_A Matrin 3; structural ge 99.7 1.1E-17 3.7E-22 127.7 9.2 82 11-98 8-94 (102)
185 1s79_A Lupus LA protein; RRM, 99.7 9.7E-18 3.3E-22 128.6 8.9 81 14-95 7-88 (103)
186 3p5t_L Cleavage and polyadenyl 99.7 4.2E-18 1.4E-22 127.5 6.7 80 19-98 2-85 (90)
187 2cpy_A RNA-binding protein 12; 99.7 5.1E-18 1.7E-22 132.8 7.5 84 102-187 11-95 (114)
188 2nlw_A Eukaryotic translation 99.7 1.6E-17 5.5E-22 128.0 10.1 84 102-187 11-101 (105)
189 2dgw_A Probable RNA-binding pr 99.7 4.1E-17 1.4E-21 122.2 12.0 82 13-97 5-88 (91)
190 1wf1_A RNA-binding protein RAL 99.7 1.3E-17 4.4E-22 129.6 9.6 96 84-188 6-102 (110)
191 2ki2_A SS-DNA binding protein 99.7 1.4E-18 4.9E-23 129.9 3.9 83 107-190 2-84 (90)
192 1x4g_A Nucleolysin TIAR; struc 99.7 2.5E-17 8.4E-22 127.8 11.0 82 103-190 22-103 (109)
193 2err_A Ataxin-2-binding protei 99.7 9.2E-18 3.2E-22 130.3 8.6 85 100-186 23-107 (109)
194 2fy1_A RNA-binding motif prote 99.7 2.9E-17 9.9E-22 128.9 11.5 85 14-99 3-89 (116)
195 2cpd_A Apobec-1 stimulating pr 99.7 5.2E-17 1.8E-21 123.7 12.5 79 102-188 11-91 (99)
196 2dnn_A RNA-binding protein 12; 99.7 1.1E-17 3.7E-22 129.6 8.6 79 105-186 15-93 (109)
197 3beg_B Splicing factor, argini 99.7 1E-17 3.4E-22 131.4 8.6 76 105-187 15-95 (115)
198 2ek1_A RNA-binding protein 12; 99.7 5.5E-18 1.9E-22 128.0 6.8 82 13-94 10-93 (95)
199 2cq1_A PTB-like protein L; RRM 99.7 4.4E-17 1.5E-21 124.3 11.8 83 12-100 9-95 (101)
200 2dnn_A RNA-binding protein 12; 99.7 1.1E-17 3.9E-22 129.4 8.7 81 13-95 11-92 (109)
201 1x4a_A Splicing factor, argini 99.7 3.8E-17 1.3E-21 126.7 11.7 87 9-98 13-101 (109)
202 2x1f_A MRNA 3'-END-processing 99.7 1.9E-17 6.5E-22 125.4 9.6 82 17-98 1-84 (96)
203 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.8E-17 9.6E-22 133.2 11.2 82 102-183 59-140 (140)
204 2cpy_A RNA-binding protein 12; 99.7 1.2E-17 4.1E-22 130.7 8.6 84 12-96 9-94 (114)
205 2m2b_A RNA-binding protein 10; 99.7 8.9E-18 3.1E-22 134.8 8.0 90 9-99 14-111 (131)
206 1wex_A Hypothetical protein (r 99.7 4.6E-17 1.6E-21 125.0 11.7 82 13-100 10-95 (104)
207 2cpj_A Non-POU domain-containi 99.7 2.9E-17 9.9E-22 125.1 10.4 82 102-189 11-92 (99)
208 2db1_A Heterogeneous nuclear r 99.7 1.3E-17 4.3E-22 131.4 8.3 82 103-186 14-98 (118)
209 2lea_A Serine/arginine-rich sp 99.7 1.3E-17 4.5E-22 134.4 8.6 91 10-100 39-131 (135)
210 1wel_A RNA-binding protein 12; 99.7 6.1E-18 2.1E-22 134.4 6.6 84 102-186 21-104 (124)
211 1x4f_A Matrin 3; structural ge 99.7 2.3E-17 7.8E-22 127.8 9.5 82 103-190 22-106 (112)
212 2cpi_A CCR4-NOT transcription 99.7 2.1E-17 7.3E-22 128.6 9.4 90 8-97 5-102 (111)
213 3ulh_A THO complex subunit 4; 99.7 3.4E-17 1.2E-21 126.5 10.4 82 12-94 23-106 (107)
214 2e5j_A Methenyltetrahydrofolat 99.7 3E-17 1E-21 124.6 9.9 81 102-187 15-95 (97)
215 1x5o_A RNA binding motif, sing 99.7 6.3E-17 2.2E-21 126.5 12.0 84 12-96 19-112 (114)
216 3ns6_A Eukaryotic translation 99.7 4.9E-18 1.7E-22 129.7 5.4 81 15-95 3-92 (100)
217 2jvr_A Nucleolar protein 3; RN 99.7 1.4E-17 4.8E-22 129.2 8.0 78 105-186 27-105 (111)
218 2dgv_A HnRNP M, heterogeneous 99.7 4.2E-17 1.4E-21 122.4 10.4 83 14-98 4-88 (92)
219 1p1t_A Cleavage stimulation fa 99.7 1.2E-17 4E-22 128.4 7.4 84 14-97 4-89 (104)
220 2hvz_A Splicing factor, argini 99.7 2.9E-17 9.9E-22 125.5 9.6 78 107-189 1-78 (101)
221 2db1_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 129.1 9.9 83 12-95 11-97 (118)
222 2ytc_A PRE-mRNA-splicing facto 99.7 6.6E-17 2.3E-21 119.4 10.9 78 101-184 7-85 (85)
223 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.2E-17 1.1E-21 136.9 10.3 91 9-99 63-155 (165)
224 1fj7_A Nucleolin RBD1, protein 99.7 3.2E-18 1.1E-22 130.9 3.8 84 103-188 14-97 (101)
225 2cqh_A IGF-II mRNA-binding pro 99.7 2.2E-17 7.4E-22 124.3 8.3 80 103-189 5-86 (93)
226 2e5g_A U6 snRNA-specific termi 99.7 8.5E-17 2.9E-21 121.3 11.5 80 104-189 6-85 (94)
227 3r27_A HnRNP L, heterogeneous 99.7 4.3E-17 1.5E-21 123.3 9.7 80 12-97 15-98 (100)
228 2jvo_A Nucleolar protein 3; nu 99.7 3.5E-17 1.2E-21 126.8 9.5 82 99-188 24-105 (108)
229 3ucg_A Polyadenylate-binding p 99.7 5.7E-17 1.9E-21 120.8 10.3 80 17-96 5-85 (89)
230 2dis_A Unnamed protein product 99.7 5.1E-17 1.7E-21 125.9 10.4 86 15-100 5-96 (109)
231 2ad9_A Polypyrimidine tract-bi 99.7 4.8E-17 1.7E-21 127.3 10.2 83 13-101 26-112 (119)
232 2kt5_A RNA and export factor-b 99.7 1.3E-16 4.5E-21 126.6 13.0 87 13-100 30-118 (124)
233 2wbr_A GW182, gawky, LD47780P; 99.7 4.8E-17 1.6E-21 118.9 9.5 72 16-93 5-78 (89)
234 2cq4_A RNA binding motif prote 99.7 1.5E-17 5.2E-22 130.0 7.3 80 16-96 23-104 (114)
235 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 8.9E-17 3E-21 130.2 11.7 82 12-93 57-140 (140)
236 4a8x_A RNA-binding protein wit 99.7 3.5E-17 1.2E-21 121.6 8.5 81 16-96 2-85 (88)
237 2xs2_A Deleted in azoospermia- 99.7 1.3E-17 4.3E-22 127.8 6.2 86 13-99 4-89 (102)
238 2fc9_A NCL protein; structure 99.7 1E-16 3.4E-21 122.5 11.2 85 11-99 8-94 (101)
239 2dgx_A KIAA0430 protein; RRM d 99.7 6.6E-17 2.2E-21 122.4 10.0 81 15-98 6-92 (96)
240 2mss_A Protein (musashi1); RNA 99.7 2.6E-17 9E-22 118.6 7.3 74 20-93 1-75 (75)
241 2a3j_A U1 small nuclear ribonu 99.7 7.3E-17 2.5E-21 128.3 10.5 82 103-187 26-111 (127)
242 1fj7_A Nucleolin RBD1, protein 99.7 7.8E-18 2.7E-22 128.8 4.7 91 6-98 5-97 (101)
243 1x4e_A RNA binding motif, sing 99.7 1.4E-17 4.9E-22 123.1 5.9 79 15-93 2-82 (85)
244 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.1E-17 7.3E-22 119.6 6.6 75 19-93 1-76 (77)
245 2fc8_A NCL protein; structure 99.7 9.4E-17 3.2E-21 122.9 10.6 86 11-99 8-95 (102)
246 2kn4_A Immunoglobulin G-bindin 99.7 1.2E-16 4.1E-21 132.3 12.0 87 13-99 65-153 (158)
247 1x4f_A Matrin 3; structural ge 99.7 5.5E-17 1.9E-21 125.6 9.2 80 14-99 21-105 (112)
248 1iqt_A AUF1, heterogeneous nuc 99.7 1.1E-17 3.9E-22 120.5 5.0 75 108-183 1-75 (75)
249 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.7E-17 5.7E-22 126.7 6.1 88 8-96 9-98 (100)
250 1sjr_A Polypyrimidine tract-bi 99.7 8.9E-17 3E-21 132.2 10.9 79 105-187 45-125 (164)
251 1wel_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 130.1 8.0 82 14-95 21-103 (124)
252 2krb_A Eukaryotic translation 99.7 2.2E-17 7.4E-22 121.0 6.3 73 106-180 1-80 (81)
253 2lcw_A RNA-binding protein FUS 99.5 1.4E-18 5E-23 136.4 0.0 86 103-188 4-97 (116)
254 2hgl_A HNRPF protein, heteroge 99.7 6.2E-17 2.1E-21 130.3 9.5 81 13-95 39-124 (136)
255 1x5p_A Negative elongation fac 99.7 4E-16 1.4E-20 118.3 13.5 80 102-189 11-90 (97)
256 3n9u_C Cleavage and polyadenyl 99.7 6.9E-17 2.4E-21 133.4 9.9 80 17-96 54-137 (156)
257 1fjc_A Nucleolin RBD2, protein 99.7 4.3E-17 1.5E-21 123.4 7.9 83 101-188 11-93 (96)
258 2lmi_A GRSF-1, G-rich sequence 99.7 1.5E-17 5.1E-22 128.6 5.3 84 102-187 7-93 (107)
259 2la4_A Nuclear and cytoplasmic 99.7 4.7E-17 1.6E-21 124.4 7.9 76 105-186 26-101 (101)
260 2cpj_A Non-POU domain-containi 99.7 1E-16 3.6E-21 122.0 9.9 85 8-98 5-91 (99)
261 1x4c_A Splicing factor, argini 99.7 2.5E-16 8.4E-21 121.9 12.0 81 13-100 10-97 (108)
262 2xnq_A Nuclear polyadenylated 99.7 1.5E-16 5.3E-21 120.6 10.6 77 102-186 18-95 (97)
263 2dha_A FLJ20171 protein; RRM d 99.7 3.2E-17 1.1E-21 129.6 6.9 80 105-186 22-105 (123)
264 2hgm_A HNRPF protein, heteroge 99.7 4.3E-17 1.5E-21 129.2 7.5 82 12-95 36-120 (126)
265 2f3j_A RNA and export factor b 99.7 6E-17 2E-21 136.6 8.7 86 103-189 85-170 (177)
266 1iqt_A AUF1, heterogeneous nuc 99.7 2.6E-17 8.9E-22 118.6 5.5 74 20-93 1-75 (75)
267 2dnl_A Cytoplasmic polyadenyla 99.7 1.2E-16 4.2E-21 124.9 9.6 80 14-94 4-86 (114)
268 2kvi_A Nuclear polyadenylated 99.7 5E-17 1.7E-21 123.1 7.1 78 103-188 7-85 (96)
269 2cpx_A Hypothetical protein FL 99.7 4.8E-17 1.6E-21 127.3 7.0 89 12-100 19-109 (115)
270 3q2s_C Cleavage and polyadenyl 99.7 8.6E-17 2.9E-21 141.3 9.4 79 17-95 67-149 (229)
271 2e5j_A Methenyltetrahydrofolat 99.7 1.9E-16 6.6E-21 120.0 10.1 86 7-97 8-95 (97)
272 2nlw_A Eukaryotic translation 99.7 1.7E-16 5.8E-21 122.2 9.8 83 12-96 9-100 (105)
273 1why_A Hypothetical protein ri 99.7 3.1E-16 1.1E-20 118.8 11.2 80 12-97 11-94 (97)
274 2err_A Ataxin-2-binding protei 99.7 9.9E-17 3.4E-21 124.4 8.5 85 10-96 21-107 (109)
275 2e44_A Insulin-like growth fac 99.7 1.5E-16 5.1E-21 120.3 9.3 81 103-187 12-93 (96)
276 3d2w_A TAR DNA-binding protein 99.7 9.2E-17 3.2E-21 119.8 8.0 82 11-97 4-85 (89)
277 1whx_A Hypothetical protein ri 99.7 6.8E-17 2.3E-21 125.8 7.4 79 105-189 9-87 (111)
278 2dnq_A RNA-binding protein 4B; 99.7 3E-16 1E-20 117.2 10.7 79 14-100 4-84 (90)
279 1nu4_A U1A RNA binding domain; 99.7 6.2E-17 2.1E-21 122.7 7.0 83 103-188 5-91 (97)
280 2hgm_A HNRPF protein, heteroge 99.7 4.1E-17 1.4E-21 129.3 6.1 81 103-186 39-121 (126)
281 4f02_A Polyadenylate-binding p 99.7 2.2E-16 7.4E-21 137.4 11.1 85 103-187 12-96 (213)
282 2xs2_A Deleted in azoospermia- 99.7 4.5E-17 1.6E-21 124.7 5.8 83 104-189 7-89 (102)
283 2cq2_A Hypothetical protein LO 99.7 1.7E-16 5.8E-21 123.0 9.1 82 103-190 22-110 (114)
284 2hgn_A Heterogeneous nuclear r 99.7 3.1E-17 1E-21 132.5 5.0 84 12-97 40-124 (139)
285 3lqv_A PRE-mRNA branch site pr 99.7 2.2E-16 7.6E-21 123.5 9.6 81 104-187 6-86 (115)
286 2dha_A FLJ20171 protein; RRM d 99.7 9.9E-17 3.4E-21 126.8 7.5 79 15-94 20-103 (123)
287 2jwn_A Embryonic polyadenylate 99.7 3.3E-16 1.1E-20 124.3 10.5 81 17-97 35-116 (124)
288 1wg1_A KIAA1579 protein, homol 99.7 1.7E-16 5.9E-21 118.1 8.2 76 105-187 4-79 (88)
289 2ki2_A SS-DNA binding protein 99.7 3.8E-17 1.3E-21 122.1 4.7 79 19-98 2-82 (90)
290 2cpd_A Apobec-1 stimulating pr 99.7 8.4E-16 2.9E-20 116.9 12.2 83 8-98 5-91 (99)
291 2dgu_A Heterogeneous nuclear r 99.7 5.4E-16 1.9E-20 118.9 11.2 80 13-100 6-87 (103)
292 2lmi_A GRSF-1, G-rich sequence 99.7 8.2E-17 2.8E-21 124.4 6.3 83 12-95 5-91 (107)
293 2voo_A Lupus LA protein; RNA-b 99.7 5.1E-16 1.7E-20 132.8 11.6 116 69-186 63-187 (193)
294 2ytc_A PRE-mRNA-splicing facto 99.7 4.7E-16 1.6E-20 114.8 9.7 77 11-93 5-84 (85)
295 2a3j_A U1 small nuclear ribonu 99.7 3.8E-16 1.3E-20 124.2 9.7 82 13-97 24-111 (127)
296 2dgt_A RNA-binding protein 30; 99.6 1.1E-15 3.8E-20 114.6 11.3 80 12-99 4-85 (92)
297 1fxl_A Paraneoplastic encephal 99.6 7.2E-16 2.4E-20 128.0 11.2 83 106-188 2-84 (167)
298 1wf0_A TDP-43, TAR DNA-binding 99.6 2.1E-16 7.1E-21 117.6 7.0 81 15-100 2-82 (88)
299 1wf0_A TDP-43, TAR DNA-binding 99.6 2E-16 6.8E-21 117.7 6.7 78 105-189 4-81 (88)
300 1b7f_A Protein (SXL-lethal pro 99.6 6.1E-16 2.1E-20 128.7 10.5 84 105-188 2-85 (168)
301 1fjc_A Nucleolin RBD2, protein 99.6 4.8E-16 1.6E-20 117.5 8.6 83 11-98 9-93 (96)
302 3d2w_A TAR DNA-binding protein 99.6 3.7E-16 1.3E-20 116.5 7.9 80 102-188 7-86 (89)
303 2jvo_A Nucleolar protein 3; nu 99.6 5.6E-16 1.9E-20 119.9 9.1 79 11-97 24-104 (108)
304 3zzy_A Polypyrimidine tract-bi 99.6 7.2E-16 2.5E-20 122.2 9.8 79 105-188 27-108 (130)
305 1wf1_A RNA-binding protein RAL 99.6 1E-15 3.5E-20 118.8 10.5 77 14-98 23-102 (110)
306 2e44_A Insulin-like growth fac 99.6 6.3E-16 2.2E-20 116.8 9.0 82 12-97 9-93 (96)
307 2f3j_A RNA and export factor b 99.6 6.7E-16 2.3E-20 130.2 10.0 82 14-96 84-167 (177)
308 1l3k_A Heterogeneous nuclear r 99.6 9.4E-16 3.2E-20 131.0 11.0 87 101-188 8-94 (196)
309 2j8a_A Histone-lysine N-methyl 99.6 4.2E-16 1.4E-20 121.6 7.9 79 107-185 3-95 (136)
310 2dnp_A RNA-binding protein 14; 99.6 1E-15 3.6E-20 114.3 9.9 79 13-99 4-84 (90)
311 2dnl_A Cytoplasmic polyadenyla 99.6 1.2E-15 4.1E-20 119.2 10.6 78 104-184 6-86 (114)
312 2e5g_A U6 snRNA-specific termi 99.6 1.6E-15 5.4E-20 114.3 10.9 79 15-99 5-85 (94)
313 2krb_A Eukaryotic translation 99.6 3E-16 1E-20 114.9 6.6 71 18-90 1-80 (81)
314 1x4g_A Nucleolysin TIAR; struc 99.6 9.6E-16 3.3E-20 118.8 9.7 80 14-99 21-102 (109)
315 2lcw_A RNA-binding protein FUS 99.4 1.9E-17 6.7E-22 129.9 0.0 86 14-99 3-98 (116)
316 2jvr_A Nucleolar protein 3; RN 99.6 4.9E-16 1.7E-20 120.5 7.9 79 14-96 24-105 (111)
317 2e5i_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 119.2 11.0 75 107-187 26-103 (124)
318 2diu_A KIAA0430 protein; struc 99.6 2.3E-15 7.9E-20 111.0 10.6 76 105-190 7-88 (96)
319 2la4_A Nuclear and cytoplasmic 99.6 6.4E-16 2.2E-20 118.0 7.9 76 14-95 23-100 (101)
320 3egn_A RNA-binding protein 40; 99.6 1.6E-16 5.3E-21 129.4 4.6 87 103-189 42-133 (143)
321 1x5p_A Negative elongation fac 99.6 5.1E-15 1.7E-19 112.1 12.4 83 9-99 6-90 (97)
322 3pgw_S U1-70K; protein-RNA com 99.6 1.4E-15 4.8E-20 145.8 11.4 85 14-98 98-184 (437)
323 2xnq_A Nuclear polyadenylated 99.6 2.6E-15 9E-20 113.8 9.8 77 12-96 16-95 (97)
324 2kvi_A Nuclear polyadenylated 99.6 1.2E-15 4E-20 115.5 7.4 79 13-99 5-86 (96)
325 1nu4_A U1A RNA binding domain; 99.6 6.5E-16 2.2E-20 117.0 5.8 81 14-97 4-90 (97)
326 2pe8_A Splicing factor 45; RRM 99.6 4.6E-15 1.6E-19 113.9 10.6 83 104-186 6-94 (105)
327 2i2y_A Fusion protein consists 99.6 2.5E-15 8.5E-20 123.3 9.7 81 11-96 66-148 (150)
328 2hzc_A Splicing factor U2AF 65 99.6 1.9E-15 6.4E-20 112.0 7.8 71 105-182 5-86 (87)
329 2cqh_A IGF-II mRNA-binding pro 99.6 2.7E-15 9.3E-20 112.7 8.5 80 14-100 4-87 (93)
330 3md3_A Nuclear and cytoplasmic 99.6 6.9E-15 2.3E-19 121.9 11.8 83 12-94 81-165 (166)
331 1wg1_A KIAA1579 protein, homol 99.6 3.7E-15 1.3E-19 110.8 8.9 74 16-96 3-78 (88)
332 2bz2_A Negative elongation fac 99.6 2.7E-15 9.2E-20 118.5 8.5 79 103-189 36-114 (121)
333 1whx_A Hypothetical protein ri 99.6 1.4E-15 5E-20 118.2 6.7 75 16-96 8-84 (111)
334 3u1l_A PRE-mRNA-splicing facto 99.6 1.5E-15 5E-20 133.2 7.4 102 80-187 108-230 (240)
335 3beg_B Splicing factor, argini 99.6 1.7E-15 6E-20 118.5 7.0 76 15-97 13-95 (115)
336 1sjr_A Polypyrimidine tract-bi 99.6 9.4E-15 3.2E-19 120.1 11.6 82 14-99 42-127 (164)
337 2qfj_A FBP-interacting repress 99.6 3.8E-15 1.3E-19 129.2 9.5 83 105-187 27-109 (216)
338 3tyt_A Heterogeneous nuclear r 99.6 4.9E-15 1.7E-19 128.0 9.7 78 105-187 3-81 (205)
339 2e5i_A Heterogeneous nuclear r 99.6 2.3E-14 8E-19 113.0 12.6 75 18-98 25-104 (124)
340 2yh0_A Splicing factor U2AF 65 99.6 1.2E-14 4.2E-19 124.2 11.8 84 15-98 111-196 (198)
341 2cq2_A Hypothetical protein LO 99.6 5.6E-15 1.9E-19 114.4 8.4 77 13-95 20-105 (114)
342 3egn_A RNA-binding protein 40; 99.6 1.2E-15 4.2E-20 124.1 4.9 85 14-98 41-132 (143)
343 3zzy_A Polypyrimidine tract-bi 99.6 1.4E-14 4.7E-19 114.8 10.4 81 15-100 25-110 (130)
344 3nmr_A Cugbp ELAV-like family 99.6 7.8E-15 2.7E-19 122.7 9.4 84 105-188 2-90 (175)
345 2j8a_A Histone-lysine N-methyl 99.6 5.4E-15 1.8E-19 115.3 7.5 76 19-94 3-94 (136)
346 2g4b_A Splicing factor U2AF 65 99.6 1.6E-14 5.4E-19 120.7 10.4 80 15-94 91-172 (172)
347 2dit_A HIV TAT specific factor 99.5 5.5E-14 1.9E-18 109.4 12.5 83 102-188 11-104 (112)
348 2cjk_A Nuclear polyadenylated 99.5 7.6E-15 2.6E-19 122.0 8.0 80 17-96 86-166 (167)
349 2voo_A Lupus LA protein; RNA-b 99.5 2.1E-14 7.3E-19 122.7 10.8 79 17-96 108-187 (193)
350 2hzc_A Splicing factor U2AF 65 99.5 1.1E-14 3.9E-19 107.7 7.3 71 15-92 3-86 (87)
351 2bz2_A Negative elongation fac 99.5 1.9E-14 6.5E-19 113.5 8.7 80 11-98 32-113 (121)
352 3pgw_A U1-A; protein-RNA compl 99.5 3.7E-14 1.3E-18 128.3 11.0 82 103-187 6-91 (282)
353 2diu_A KIAA0430 protein; struc 99.5 7.4E-14 2.5E-18 103.0 9.4 73 17-99 7-87 (96)
354 2adc_A Polypyrimidine tract-bi 99.5 5.9E-14 2E-18 123.3 10.4 81 102-187 30-111 (229)
355 2pe8_A Splicing factor 45; RRM 99.5 9.5E-14 3.2E-18 106.6 9.9 81 15-95 5-93 (105)
356 3v4m_A Splicing factor U2AF 65 99.5 5E-14 1.7E-18 108.2 7.8 83 104-186 3-97 (105)
357 2dit_A HIV TAT specific factor 99.5 4.2E-13 1.4E-17 104.3 12.2 85 11-99 8-105 (112)
358 3sde_A Paraspeckle component 1 99.5 1.1E-13 3.7E-18 124.0 9.4 82 99-186 15-96 (261)
359 3ue2_A Poly(U)-binding-splicin 99.5 1.2E-13 4.1E-18 108.1 8.3 81 105-185 19-108 (118)
360 2d9o_A DNAJ (HSP40) homolog, s 99.5 8.6E-13 3E-17 100.0 12.6 68 116-190 27-94 (100)
361 2d9o_A DNAJ (HSP40) homolog, s 99.5 8.5E-13 2.9E-17 100.1 12.3 76 18-98 10-92 (100)
362 1fje_B Nucleolin RBD12, protei 99.5 1.9E-13 6.3E-18 114.6 9.3 79 13-96 94-174 (175)
363 1qm9_A Polypyrimidine tract-bi 99.5 7.8E-14 2.7E-18 119.4 7.1 79 105-188 2-81 (198)
364 3u1l_A PRE-mRNA-splicing facto 99.4 1E-13 3.5E-18 121.4 7.4 79 14-98 130-231 (240)
365 1jmt_A Splicing factor U2AF 35 99.4 4.2E-14 1.4E-18 108.4 4.0 73 111-184 20-104 (104)
366 3ue2_A Poly(U)-binding-splicin 99.4 1.5E-12 5.3E-17 101.8 8.0 78 17-94 19-107 (118)
367 3v4m_A Splicing factor U2AF 65 99.3 1.7E-12 5.8E-17 99.5 7.4 80 16-95 3-96 (105)
368 3tht_A Alkylated DNA repair pr 99.3 2.4E-12 8.3E-17 118.6 9.5 77 102-184 14-97 (345)
369 3s6e_A RNA-binding protein 39; 99.3 4.8E-12 1.7E-16 98.3 8.0 78 104-185 5-92 (114)
370 1jmt_A Splicing factor U2AF 35 99.3 1.3E-12 4.5E-17 100.0 3.9 70 23-93 20-103 (104)
371 3tht_A Alkylated DNA repair pr 99.3 6.8E-12 2.3E-16 115.6 8.9 114 8-130 8-132 (345)
372 1owx_A Lupus LA protein, SS-B, 99.2 5.1E-11 1.8E-15 92.7 8.8 76 103-184 15-94 (121)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 7.8E-11 2.7E-15 86.0 7.9 76 104-188 5-88 (91)
374 3s6e_A RNA-binding protein 39; 99.1 2.4E-10 8.2E-15 88.7 8.3 76 15-94 4-91 (114)
375 1owx_A Lupus LA protein, SS-B, 99.0 1E-09 3.6E-14 85.3 8.7 74 14-93 14-93 (121)
376 1ufw_A Synaptojanin 2; RNP dom 99.0 9.8E-10 3.4E-14 80.6 6.2 74 103-185 12-94 (95)
377 3dxb_A Thioredoxin N-terminall 98.9 9.5E-09 3.2E-13 89.4 11.3 68 118-185 141-212 (222)
378 2dhx_A Poly (ADP-ribose) polym 98.9 1.6E-08 5.5E-13 75.0 10.2 89 15-119 5-99 (104)
379 2dnr_A Synaptojanin-1; RRM dom 98.8 1.3E-08 4.5E-13 74.3 7.3 73 16-96 5-86 (91)
380 2l9w_A U4/U6 snRNA-associated- 98.7 6E-08 2.1E-12 72.5 8.4 72 105-182 20-96 (117)
381 3dxb_A Thioredoxin N-terminall 98.6 1.4E-07 4.7E-12 81.9 9.6 77 18-94 124-211 (222)
382 1ufw_A Synaptojanin 2; RNP dom 98.6 5.7E-08 1.9E-12 71.2 5.4 72 15-94 12-93 (95)
383 2l9w_A U4/U6 snRNA-associated- 98.3 2.4E-06 8.1E-11 63.9 8.3 71 15-91 18-95 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.2 1.6E-05 5.4E-10 59.0 10.8 75 104-187 6-85 (104)
385 1whv_A Poly(A)-specific ribonu 98.0 3.2E-05 1.1E-09 56.6 8.9 62 10-80 8-69 (100)
386 1wey_A Calcipressin 1; structu 97.9 6.4E-05 2.2E-09 56.0 8.7 77 105-187 4-85 (104)
387 1uw4_A UPF3X; nonsense mediate 97.6 0.00033 1.1E-08 51.2 8.7 79 107-185 2-87 (91)
388 1wey_A Calcipressin 1; structu 97.6 0.00022 7.6E-09 53.1 7.6 76 16-97 3-85 (104)
389 1whv_A Poly(A)-specific ribonu 97.6 0.00018 6.1E-09 52.7 6.6 56 105-169 15-70 (100)
390 1wwh_A Nucleoporin 35, nucleop 97.4 0.00055 1.9E-08 52.4 7.5 73 104-184 22-95 (119)
391 3ctr_A Poly(A)-specific ribonu 97.4 0.00018 6.3E-09 52.8 4.6 53 18-79 6-58 (101)
392 3ctr_A Poly(A)-specific ribonu 97.3 0.00028 9.5E-09 51.8 5.2 53 108-169 8-60 (101)
393 2l08_A Regulator of nonsense t 97.2 0.00097 3.3E-08 49.0 6.8 80 105-184 8-94 (97)
394 1uw4_A UPF3X; nonsense mediate 97.2 0.0011 3.6E-08 48.5 6.8 61 19-79 2-64 (91)
395 1wwh_A Nucleoporin 35, nucleop 97.2 0.0019 6.5E-08 49.4 8.4 73 14-93 20-94 (119)
396 3pq1_A Poly(A) RNA polymerase; 96.6 0.001 3.5E-08 63.2 3.1 57 17-79 52-108 (464)
397 2l08_A Regulator of nonsense t 96.4 0.0033 1.1E-07 46.2 4.5 63 17-79 8-72 (97)
398 3pq1_A Poly(A) RNA polymerase; 95.9 0.0027 9.1E-08 60.4 2.2 57 105-167 52-108 (464)
399 3p3d_A Nucleoporin 53; structu 95.5 0.011 3.8E-07 45.8 3.9 76 17-93 6-96 (132)
400 3p3d_A Nucleoporin 53; structu 94.7 0.029 9.9E-07 43.5 4.0 79 105-185 6-98 (132)
401 3d45_A Poly(A)-specific ribonu 92.9 0.27 9.2E-06 47.5 8.2 55 17-80 439-493 (507)
402 4eyt_A Telomerase associated p 91.6 1.9 6.5E-05 30.6 9.0 70 15-92 9-78 (129)
403 3d45_A Poly(A)-specific ribonu 91.4 0.34 1.2E-05 46.8 6.9 56 106-170 440-495 (507)
404 4eyt_A Telomerase associated p 90.7 1.2 4.2E-05 31.6 7.3 56 105-168 11-66 (129)
405 2g0c_A ATP-dependent RNA helic 83.5 2.2 7.6E-05 29.3 5.3 60 116-184 11-75 (76)
406 2cu1_A Mitogen-activated prote 75.3 4.1 0.00014 29.5 4.4 68 111-187 21-89 (103)
407 3lpe_A Putative transcription 73.2 19 0.00066 25.6 7.8 31 45-80 40-70 (92)
408 3zzp_A TS9, ribosomal protein 68.2 7.6 0.00026 26.9 4.5 59 62-130 7-68 (77)
409 2lfv_A Protein DAMX; cell divi 69.2 1.3 4.4E-05 33.0 0.0 52 118-171 34-87 (106)
410 2ew9_A Copper-transporting ATP 62.7 32 0.0011 25.9 7.9 128 19-168 6-141 (149)
411 3fry_A Probable copper-exporti 61.9 11 0.00038 24.9 4.4 56 105-167 5-60 (73)
412 2inr_A DNA topoisomerase 4 sub 61.1 13 0.00043 35.6 5.9 94 18-126 275-372 (514)
413 4ev1_A Anabena TIC22; TIC22 fo 59.7 15 0.00052 31.6 5.7 29 151-180 158-186 (252)
414 3ilw_A DNA gyrase subunit A; D 58.7 12 0.00043 35.2 5.3 63 17-80 235-301 (470)
415 2l69_A Rossmann 2X3 fold prote 52.6 32 0.0011 24.5 5.4 18 150-167 53-70 (134)
416 4hhu_A OR280; engineered prote 51.6 58 0.002 24.2 6.8 99 68-182 11-128 (170)
417 3lpx_A GYRA, DNA gyrase, A sub 50.2 22 0.00074 33.7 5.5 63 17-80 225-290 (500)
418 3h7h_B Transcription elongatio 47.1 40 0.0014 24.7 5.5 36 44-84 40-75 (106)
419 2rop_A Copper-transporting ATP 46.2 1.1E+02 0.0039 24.4 10.6 138 18-168 21-183 (202)
420 4e8u_A Putative uncharacterize 45.8 41 0.0014 27.0 5.8 47 108-157 14-71 (172)
421 2hiy_A Hypothetical protein; C 45.8 1.2E+02 0.004 24.5 8.9 122 19-156 7-144 (183)
422 2xcs_B DNA gyrase subunit B, D 45.7 24 0.00082 35.0 5.2 62 18-80 457-522 (692)
423 2kjw_A TS9, 30S ribosomal prot 45.4 14 0.00049 26.7 2.7 59 62-130 7-68 (96)
424 4e8u_A Putative uncharacterize 44.3 35 0.0012 27.5 5.1 50 19-71 13-73 (172)
425 3lpe_A Putative transcription 43.9 54 0.0018 23.2 5.7 34 133-171 40-73 (92)
426 2ofg_X Zinc-transporting ATPas 43.6 83 0.0028 22.6 7.0 57 106-168 9-69 (111)
427 3dxs_X Copper-transporting ATP 43.4 54 0.0018 21.2 5.5 55 107-167 4-62 (74)
428 3fry_A Probable copper-exporti 42.2 45 0.0015 21.7 4.9 55 18-79 6-60 (73)
429 2lsl_A Telomerase associated p 46.2 6 0.00021 28.3 0.0 78 13-90 13-107 (137)
430 2crl_A Copper chaperone for su 39.4 97 0.0033 21.7 6.7 55 18-79 20-75 (98)
431 3tqs_A Ribosomal RNA small sub 38.1 24 0.00081 30.3 3.6 34 108-141 98-131 (255)
432 3uzu_A Ribosomal RNA small sub 37.9 15 0.00051 32.1 2.2 36 106-141 114-149 (279)
433 2rf4_B DNA-directed RNA polyme 37.6 25 0.00085 24.7 2.8 32 11-42 12-43 (87)
434 2cu1_A Mitogen-activated prote 37.6 56 0.0019 23.6 4.7 47 25-79 23-70 (103)
435 1yg0_A COP associated protein; 36.2 73 0.0025 19.4 5.6 54 108-167 4-60 (66)
436 1kvi_A Copper-transporting ATP 34.3 93 0.0032 20.0 5.8 57 105-167 8-68 (79)
437 2lsl_A Telomerase associated p 40.0 8.7 0.0003 27.5 0.0 23 148-170 77-99 (137)
438 3ced_A Methionine import ATP-b 33.7 76 0.0026 22.6 5.2 56 116-171 30-88 (98)
439 2exu_A Transcription initiatio 32.8 74 0.0025 26.3 5.5 25 59-83 148-172 (200)
440 3j21_T 50S ribosomal protein L 32.4 66 0.0022 22.6 4.4 51 114-167 30-82 (86)
441 2qyc_A Ferredoxin-like protein 31.9 1.3E+02 0.0044 21.4 6.3 54 109-163 8-71 (103)
442 2xmw_A PACS-N, cation-transpor 31.9 92 0.0032 19.2 5.8 55 107-167 5-62 (71)
443 3uzu_A Ribosomal RNA small sub 31.8 21 0.00072 31.2 2.2 35 18-52 114-148 (279)
444 3ftd_A Dimethyladenosine trans 31.8 89 0.003 26.5 6.2 32 107-138 96-127 (249)
445 1cqm_A Ribosomal protein S6; a 31.6 72 0.0025 22.9 4.8 64 26-89 10-87 (101)
446 3bb5_A Stress responsive alpha 31.3 1.6E+02 0.0054 21.8 7.1 59 107-165 22-91 (121)
447 2g9o_A Copper-transporting ATP 30.5 92 0.0031 21.2 5.1 56 107-168 5-64 (90)
448 4a4j_A Pacszia, cation-transpo 30.5 1E+02 0.0035 19.3 6.3 55 107-167 4-61 (69)
449 2npt_B Mitogen-activated prote 30.5 72 0.0025 22.8 4.3 52 111-170 33-85 (100)
450 2i9x_A Putative septation prot 30.1 67 0.0023 22.6 4.1 26 132-157 5-30 (87)
451 2kt2_A Mercuric reductase; nme 29.3 1E+02 0.0035 19.0 6.9 54 108-167 3-59 (69)
452 1q4r_A Protein AT3G17210; cent 29.2 1.4E+02 0.0049 21.5 6.2 59 20-78 13-82 (112)
453 3bde_A MLL5499 protein; stress 29.0 1.6E+02 0.0056 21.7 6.5 55 109-163 24-86 (120)
454 3fut_A Dimethyladenosine trans 28.8 41 0.0014 29.2 3.5 34 18-52 110-143 (271)
455 1q8l_A Copper-transporting ATP 28.7 1.3E+02 0.0043 19.8 7.7 57 106-168 10-70 (84)
456 1ip9_A BEM1 protein; ubiquitin 27.8 55 0.0019 22.9 3.3 55 21-80 23-77 (85)
457 3bgu_A Ferredoxin-like protein 27.5 1.5E+02 0.005 21.8 6.0 57 21-78 25-91 (116)
458 3bb5_A Stress responsive alpha 27.3 1.9E+02 0.0064 21.3 7.3 60 19-78 22-92 (121)
459 3h7h_B Transcription elongatio 27.0 83 0.0029 23.0 4.4 27 147-173 50-76 (106)
460 1opz_A Potential copper-transp 27.0 1.2E+02 0.0041 19.0 6.4 56 106-167 7-66 (76)
461 1cpz_A Protein (COPZ); copper 27.0 1.1E+02 0.0038 18.6 8.0 54 108-167 3-60 (68)
462 1x8d_A Hypothetical protein YI 26.9 1.1E+02 0.0038 22.1 5.1 43 119-165 25-67 (104)
463 1xn9_A 30S ribosomal protein S 26.6 1.6E+02 0.0055 21.3 5.8 50 27-77 27-81 (101)
464 2xzm_P RPS24E; ribosome, trans 26.2 53 0.0018 25.7 3.3 47 28-75 31-82 (149)
465 2l3m_A Copper-ION-binding prot 26.1 1.2E+02 0.0041 18.7 6.2 56 107-168 7-66 (71)
466 2jrh_A Mitogen-activated prote 26.0 73 0.0025 22.5 3.6 63 113-184 19-82 (94)
467 3bgu_A Ferredoxin-like protein 25.6 1.5E+02 0.0051 21.7 5.8 56 108-164 24-89 (116)
468 1ywx_A 30S ribosomal protein S 25.4 1.6E+02 0.0055 21.3 5.6 47 28-75 28-79 (102)
469 2ia9_A Putative septation prot 25.2 89 0.003 22.6 4.1 26 132-157 5-30 (100)
470 3cjk_B Copper-transporting ATP 25.0 1.3E+02 0.0046 18.9 6.6 55 108-168 5-63 (75)
471 1y3j_A Copper-transporting ATP 24.5 74 0.0025 20.5 3.6 55 107-167 5-63 (77)
472 1osd_A MERP, hypothetical prot 24.4 1.3E+02 0.0045 18.6 7.4 56 107-168 5-64 (72)
473 3eye_A PTS system N-acetylgala 24.4 1.3E+02 0.0046 23.9 5.5 29 61-91 82-110 (168)
474 2nov_A DNA topoisomerase 4 sub 24.4 17 0.0006 34.5 0.3 24 18-41 251-274 (496)
475 2ot8_C HnRNP M, heterogeneous 24.4 26 0.0009 19.0 0.8 10 338-347 16-25 (30)
476 1qyr_A KSGA, high level kasuga 24.2 61 0.0021 27.6 3.7 33 19-51 91-123 (252)
477 2kpo_A Rossmann 2X2 fold prote 24.1 85 0.0029 21.5 3.6 50 118-180 33-83 (110)
478 1yjr_A Copper-transporting ATP 23.9 1.4E+02 0.0047 18.6 6.9 56 106-167 5-64 (75)
479 2v94_A RPS24, 30S ribosomal pr 23.9 1.6E+02 0.0054 21.6 5.4 48 28-76 37-89 (107)
480 2i9z_A Putative septation prot 23.7 1E+02 0.0034 22.6 4.2 26 132-157 5-30 (105)
481 1i4w_A Mitochondrial replicati 23.3 35 0.0012 30.9 2.1 23 19-41 143-165 (353)
482 1zvu_A Topoisomerase IV subuni 23.2 75 0.0026 31.6 4.5 36 19-54 224-262 (716)
483 1tr0_A Stable protein 1; plant 23.1 2.1E+02 0.0071 20.4 6.5 59 20-78 11-82 (108)
484 2c60_A Human mitogen-activated 22.7 69 0.0024 23.2 3.0 50 113-170 46-96 (111)
485 2crl_A Copper chaperone for su 22.5 1.6E+02 0.0055 20.5 5.3 54 108-168 22-76 (98)
486 2kyz_A Heavy metal binding pro 22.5 74 0.0025 19.8 3.2 53 108-167 4-56 (67)
487 1p6t_A Potential copper-transp 22.5 2.4E+02 0.0081 20.8 12.0 119 20-168 9-135 (151)
488 4a18_J EIF6, translation initi 22.4 1E+02 0.0035 26.3 4.7 130 26-167 75-223 (248)
489 1nz8_A Transcription antitermi 22.2 1.3E+02 0.0043 22.2 4.8 49 59-131 61-116 (119)
490 2i9x_A Putative septation prot 21.9 1.2E+02 0.004 21.4 4.1 26 44-69 5-30 (87)
491 2e5p_A Protein PHF1, PHD finge 21.5 29 0.00098 23.1 0.8 10 149-158 38-47 (68)
492 1zvp_A Hypothetical protein VC 21.4 1.7E+02 0.0057 22.3 5.3 121 32-169 5-131 (133)
493 1mli_A Muconolactone isomerase 21.2 2.3E+02 0.0079 20.2 9.6 68 24-95 9-86 (96)
494 3ftd_A Dimethyladenosine trans 21.1 55 0.0019 27.8 2.8 34 19-52 96-129 (249)
495 3tqs_A Ribosomal RNA small sub 21.0 33 0.0011 29.4 1.4 33 20-52 98-130 (255)
496 3lo3_A Uncharacterized conserv 20.9 1.6E+02 0.0056 20.6 4.9 20 147-166 52-71 (94)
497 3fut_A Dimethyladenosine trans 20.7 50 0.0017 28.6 2.5 34 106-140 110-143 (271)
498 4bby_A Alkyldihydroxyacetoneph 20.7 83 0.0028 31.0 4.4 56 113-169 350-409 (658)
499 4a8j_B Elongator complex prote 20.7 2.3E+02 0.0077 24.4 6.4 48 19-66 167-222 (270)
500 1mwy_A ZNTA; open-faced beta-s 20.6 1.7E+02 0.0057 18.3 7.1 55 107-167 5-61 (73)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=5.9e-36 Score=257.59 Aligned_cols=180 Identities=36% Similarity=0.669 Sum_probs=153.7
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCCcEE
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQV 88 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~~i 88 (349)
..+.++.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++||+. .+.+.++.|
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l 84 (196)
T 1l3k_A 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84 (196)
T ss_dssp ---CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEEC
T ss_pred cCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEe
Confidence 3445667889999999999999999999999999999999999998999999999999999999999984 458999999
Q ss_pred EEeecCCCCCCCC--CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHH
Q 018875 89 EIKRTIPKGSGQS--KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 89 ~v~~~~~~~~~~~--~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 166 (349)
.|.++.+...... .....++|||.|||+++|+++|+++|++||.|+.|.|+.+..++++++||||+|++.++|++||+
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 9999876544332 33466899999999999999999999999999999999999899999999999999999999999
Q ss_pred hCCCcccCCeEEEEEeCCCCCCCC
Q 018875 167 KGNMIDMAGTQVEIKKAEPKKSSN 190 (349)
Q Consensus 167 ~l~~~~~~g~~i~v~~a~~~~~~~ 190 (349)
. ++..|+++.|+|.++.++....
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp C-SCCEETTEECEEEECC------
T ss_pred h-CCcEECCEEEEEEecCChhHhc
Confidence 7 7899999999999999886553
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=8e-36 Score=260.85 Aligned_cols=169 Identities=23% Similarity=0.465 Sum_probs=150.5
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
..+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.++ .+.++.|.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3466899999999999999999999999999999999999999999999999999999999998544 78999999988
Q ss_pred cCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcc
Q 018875 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~ 172 (349)
+...... ......+|||.|||+++|+++|+++|++||.|+.|.|+.++ ..+++||||+|++.++|++||++||+..
T Consensus 92 ~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 92 SQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML 167 (213)
T ss_dssp CCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred ccccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCE
Confidence 7654322 22245789999999999999999999999999999999885 3479999999999999999999999999
Q ss_pred cCCeEEEEEeCCCCC
Q 018875 173 MAGTQVEIKKAEPKK 187 (349)
Q Consensus 173 ~~g~~i~v~~a~~~~ 187 (349)
|.+++|+|.+++++.
T Consensus 168 ~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 168 LNDRKVFVGRFKSRK 182 (213)
T ss_dssp ETTEECEEEECCCHH
T ss_pred ECCEEEEEEEcCCCc
Confidence 999999999998753
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=4.1e-36 Score=251.99 Aligned_cols=165 Identities=47% Similarity=0.855 Sum_probs=154.1
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEEeecCCC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPK 96 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~~~ 96 (349)
++++|||+|||+++|+++|+++|++||+|.+|.|++++.++++++||||+|.++++|++|+++.+.++++.|.|.++.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 56899999999999999999999999999999999998899999999999999999999999888999999999887654
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCe
Q 018875 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (349)
Q Consensus 97 ~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~ 176 (349)
.. ..+..+|||.|||+++|+++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++|++ +++..|.++
T Consensus 82 ~~----~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 82 DE----QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp HH----HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred hh----ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 22 2256799999999999999999999999999999999998899999999999999999999998 799999999
Q ss_pred EEEEEeCCCC
Q 018875 177 QVEIKKAEPK 186 (349)
Q Consensus 177 ~i~v~~a~~~ 186 (349)
+|+|.++.++
T Consensus 157 ~i~V~~a~pk 166 (167)
T 2cjk_A 157 KIEIKRAEPR 166 (167)
T ss_dssp CEEEEECCCC
T ss_pred EEEEeecCCC
Confidence 9999999876
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=241.98 Aligned_cols=164 Identities=24% Similarity=0.416 Sum_probs=151.0
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeecCCC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRTIPK 96 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~~~~ 96 (349)
++|||+|||+++|+++|+++|++||+|.+|.|+.++ ++++++||||+|.+.++|++|++.+ ..+.++.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999997 5779999999999999999999744 4889999999998765
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCe
Q 018875 97 GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT 176 (349)
Q Consensus 97 ~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~ 176 (349)
.. ....+..+|||.|||+++|+++|+++|++||.|..+.|+.+..+++++++|||+|.+.++|++|++.||+..|.++
T Consensus 80 ~~--~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 80 QQ--SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp CC--CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CC--CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 43 3344678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCC
Q 018875 177 QVEIKKAEP 185 (349)
Q Consensus 177 ~i~v~~a~~ 185 (349)
+|+|.++++
T Consensus 158 ~i~v~~a~~ 166 (166)
T 3md3_A 158 PLRINWAAK 166 (166)
T ss_dssp ECEEEESCC
T ss_pred EEEEEecCC
Confidence 999999863
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=6.5e-35 Score=254.88 Aligned_cols=175 Identities=22% Similarity=0.475 Sum_probs=155.2
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~ 93 (349)
.+.++|||+|||+++|+++|+++|++||+|++|.|++++.++++++||||+|.++++|++|++.+ ..|.++.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 35679999999999999999999999999999999999888999999999999999999999954 4899999999887
Q ss_pred CCCCCCC-------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHH
Q 018875 94 IPKGSGQ-------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 94 ~~~~~~~-------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 166 (349)
....... ......++|||.|||+++|+++|+++|++||.|+.|.|+.+..++++++||||+|++.++|++||+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 6543221 123466899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcccCCeEEEEEeCCCCCCCC
Q 018875 167 KGNMIDMAGTQVEIKKAEPKKSSN 190 (349)
Q Consensus 167 ~l~~~~~~g~~i~v~~a~~~~~~~ 190 (349)
+||+..|.++.|+|.++.++....
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HccCCEeCCcEEEEEEecCCCCCC
Confidence 999999999999999999875443
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.4e-34 Score=242.76 Aligned_cols=164 Identities=27% Similarity=0.510 Sum_probs=152.2
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--cCccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED--THIINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~--~~~~~g~~i~v~~~ 93 (349)
++.++|||+|||+++|+++|+++|++||+|.++.|+.++.++++++||||+|.++++|++|++. ...+.++.|.|.++
T Consensus 1 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 1 ASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp -CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 3678999999999999999999999999999999999988999999999999999999999984 44889999999998
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 94 IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 94 ~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
.+... ..+.++|||.|||.++|+++|+++|++||.|..+.|+.+..+++++++|||+|.+.++|++|++.||+..+
T Consensus 81 ~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 81 RPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp CCCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 76543 34678999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CC--eEEEEEeC
Q 018875 174 AG--TQVEIKKA 183 (349)
Q Consensus 174 ~g--~~i~v~~a 183 (349)
.+ ++|+|.+|
T Consensus 157 ~g~~~~l~V~~A 168 (168)
T 1b7f_A 157 EGGSQPLSVRLA 168 (168)
T ss_dssp TTCSSCCEEEEC
T ss_pred cCCCeEEEEEeC
Confidence 88 99999886
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.5e-34 Score=239.81 Aligned_cols=163 Identities=29% Similarity=0.598 Sum_probs=150.6
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeecC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRTI 94 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~~ 94 (349)
++++|||+|||+++|+++|+++|++||+|.++.++.++.++++++||||+|.++++|++|++.+ ..+.++.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4689999999999999999999999999999999999989999999999999999999999844 48899999999987
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC
Q 018875 95 PKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (349)
Q Consensus 95 ~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~ 174 (349)
+... .....+|||.|||+++|+++|+++|++||.|..+.|+.+..+++++++|||+|.+.++|++|++.||+..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6533 336689999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeE--EEEEeC
Q 018875 175 GTQ--VEIKKA 183 (349)
Q Consensus 175 g~~--i~v~~a 183 (349)
++. |+|++|
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 965 888775
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3e-33 Score=236.01 Aligned_cols=165 Identities=21% Similarity=0.434 Sum_probs=145.7
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHccC--ccC---CcEE
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTG--QPRGFGFITYADPSVVDKVIEDTH--IIN---GKQV 88 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g--~~kG~afVef~~~~~a~~al~~~~--~~~---g~~i 88 (349)
++.++|||+|||+++|+++|+++|++||+|.+|+|++++.++ ++++||||+|.++++|++|++.++ .+. .+.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 357899999999999999999999999999999999998776 899999999999999999998554 333 5677
Q ss_pred EEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhC
Q 018875 89 EIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (349)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 168 (349)
.+.++.+... .....++|||.|||+++|+++|+++|++||.|..|.|+.+. ++++++||||+|++.++|++|++.|
T Consensus 81 ~~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 81 QMKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAM 156 (175)
T ss_dssp EEEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEcccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHh
Confidence 7777665433 23467899999999999999999999999999999999985 5889999999999999999999999
Q ss_pred CCcccCC---eEEEEEeCC
Q 018875 169 NMIDMAG---TQVEIKKAE 184 (349)
Q Consensus 169 ~~~~~~g---~~i~v~~a~ 184 (349)
|+..+.. ++|+|.+|.
T Consensus 157 ~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 157 HQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TTSCCCTTCSSCCEEEECC
T ss_pred cCCcccCCCCCCeEEEecC
Confidence 9987764 999999874
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=6.3e-32 Score=227.50 Aligned_cols=158 Identities=20% Similarity=0.475 Sum_probs=142.1
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKY----G-------DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIIN 84 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~----G-------~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~ 84 (349)
++++|||+|||+++|+++|+++|++| + +|.++.+.++ ++||||+|.++++|++|++ +...+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 56899999999999999999999999 6 6777766654 5899999999999999994 334889
Q ss_pred CcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHH
Q 018875 85 GKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 164 (349)
Q Consensus 85 g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~A 164 (349)
+++|.|.++..... ....++|||.|||+++|+++|+++|++||.|..|.|+.+..+++++++|||+|+++++|++|
T Consensus 77 g~~i~v~~~~~~~~----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP----LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp TEECEEECCSSCCC----CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred CceeeecCCcccCC----CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 99999998765433 23578999999999999999999999999999999999988999999999999999999999
Q ss_pred HHhCCCcccCCeEEEEEeCC
Q 018875 165 LSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 165 i~~l~~~~~~g~~i~v~~a~ 184 (349)
+++||+..|.+++|+|++|.
T Consensus 153 ~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 153 IAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHTTCEETTEECEEEECC
T ss_pred HHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999873
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.1e-32 Score=233.05 Aligned_cols=167 Identities=20% Similarity=0.374 Sum_probs=145.8
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v 90 (349)
..++.+.++|||+|||+++|+++|+++|++|+.|.. .++.+..++++++||||+|.++++|++|++ +...+.++.|.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v 85 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 85 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEE
Confidence 345677899999999999999999999999998776 344444578899999999999999999997 334889999999
Q ss_pred eecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 91 KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
.++.+... ....+.++|||.|||+++|+++|+++|++|+.|..+ ..++++++||||+|.+.++|++||+.|++
T Consensus 86 ~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 86 EKPKGRDS--KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp ECCCCSSC--STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred ecCCCccc--cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 99876543 334467899999999999999999999999988765 56788999999999999999999999999
Q ss_pred cccCCeEEEEEeCCCC
Q 018875 171 IDMAGTQVEIKKAEPK 186 (349)
Q Consensus 171 ~~~~g~~i~v~~a~~~ 186 (349)
..|.++.|+|+++.++
T Consensus 159 ~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 159 AEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEETTEEEEEEECSSC
T ss_pred CEECCeEEEEEecCCC
Confidence 9999999999999875
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=1.4e-31 Score=230.52 Aligned_cols=167 Identities=19% Similarity=0.425 Sum_probs=144.2
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCcc
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKY----G-------DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHII 83 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~----G-------~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~ 83 (349)
..+++|||+|||+++|+++|+++|++| + .|.++.+. ++++||||+|.++++|++||+ +...+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 357899999999999999999999999 4 55555554 346999999999999999994 23388
Q ss_pred CCcEEEEeecCCCCCCC----------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCc
Q 018875 84 NGKQVEIKRTIPKGSGQ----------------SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRS 147 (349)
Q Consensus 84 ~g~~i~v~~~~~~~~~~----------------~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~ 147 (349)
.++.|.|.++....... ......++|||.|||+++|+++|+++|++||.|..|.|+.+..++++
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 99999999876553221 11246689999999999999999999999999999999999889999
Q ss_pred ccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCCC
Q 018875 148 RGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 148 ~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~~ 188 (349)
++||||+|.++++|++|++.||+..|.++.|+|.++.++..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999987643
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.98 E-value=5.2e-31 Score=239.86 Aligned_cols=164 Identities=16% Similarity=0.290 Sum_probs=143.9
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFN----KHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~----~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
.+..++++|||+|||+++|+++|+ ++|++||+|++|+|++ ++++++||||+|.+.++|++||+.++ .|.++
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345678999999999999999976 8999999999999886 67789999999999999999998554 88999
Q ss_pred EEEEeecCCCCCC-------------------------------------------------------------------
Q 018875 87 QVEIKRTIPKGSG------------------------------------------------------------------- 99 (349)
Q Consensus 87 ~i~v~~~~~~~~~------------------------------------------------------------------- 99 (349)
.|.|+++......
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 9999987654320
Q ss_pred ----------------------------------------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEE
Q 018875 100 ----------------------------------------QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139 (349)
Q Consensus 100 ----------------------------------------~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~ 139 (349)
.....+.++|||.|||+++|+++|+++|++||.|++|+|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 0122245789999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC-CeEEEEEeCC
Q 018875 140 RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA-GTQVEIKKAE 184 (349)
Q Consensus 140 ~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~-g~~i~v~~a~ 184 (349)
.++ ++||||+|.+.++|++||+.||+..|. ++.|+|+|++
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 764 579999999999999999999999999 9999999986
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=6.4e-31 Score=239.48 Aligned_cols=171 Identities=15% Similarity=0.313 Sum_probs=156.1
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~ 93 (349)
...++|||+|||+++|+++|+++|++||+|.++.|+.+..++++++||||+|.+.++|++|++.+ ..+.++.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999999999999999744 4889999999998
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcc
Q 018875 94 IPKGSGQSKDFKTKKIFVGGIPSSV-SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (349)
Q Consensus 94 ~~~~~~~~~~~~~~~l~V~nL~~~~-t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~ 172 (349)
.+..... ...+.++|||.|||+++ |+++|+++|++||.|..|.|+.+. +++++++|||+|.+.++|++|+++||+..
T Consensus 173 ~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 250 (284)
T 3smz_A 173 DAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLS 250 (284)
T ss_dssp CGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCc
Confidence 8765433 34577899999999995 999999999999999999999985 78999999999999999999999999999
Q ss_pred cCCeEEEEEeCCCCCC
Q 018875 173 MAGTQVEIKKAEPKKS 188 (349)
Q Consensus 173 ~~g~~i~v~~a~~~~~ 188 (349)
|.+++|+|.++.++..
T Consensus 251 ~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 251 LGGSHLRVSFCAPGPP 266 (284)
T ss_dssp ETTEECEEEECCSSSC
T ss_pred cCCeEEEEEEecCCCc
Confidence 9999999999988654
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2e-31 Score=231.29 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=136.8
Q ss_pred CCCceEEEcCCC-cCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 16 ASPGKIFIGGLP-KDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 16 ~~~~~lfV~nLp-~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
.+.++|||+||| +++|+++|+++|++||+|.+|+|++++ +|||||+|.++++|++||+.++ .+.+++|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 899999999999999999999998753 5899999999999999999554 89999999998
Q ss_pred cCCCCCCCC---------------------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhccCce--EEEE
Q 018875 93 TIPKGSGQS---------------------------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKV--LEHQ 137 (349)
Q Consensus 93 ~~~~~~~~~---------------------------------~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v--~~v~ 137 (349)
+..+...+. ...+.++|||.|||+++|+++|+++|++||.| ..|+
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 754321100 01245689999999999999999999999999 8898
Q ss_pred EEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCe----EEEEEeC
Q 018875 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT----QVEIKKA 183 (349)
Q Consensus 138 i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~----~i~v~~a 183 (349)
|+.++ +.++++|||+|++.++|++||+.||+.+|.++ ++.|.++
T Consensus 157 ~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 88774 45668999999999999999999999999886 5666554
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=6.5e-31 Score=232.18 Aligned_cols=164 Identities=20% Similarity=0.304 Sum_probs=143.2
Q ss_pred CCCCCCceEEEcCCCc-CCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEE
Q 018875 13 GDGASPGKIFIGGLPK-DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVE 89 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~ 89 (349)
....+.++|||+|||+ ++|+++|+++|++||+|++|.|+.++ ++||||+|.++++|++|++.+ ..+.++.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456789999999999 99999999999999999999999875 589999999999999999844 488999999
Q ss_pred EeecCCCCCCCC-------------------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhccC-ceEEEE
Q 018875 90 IKRTIPKGSGQS-------------------------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQ 137 (349)
Q Consensus 90 v~~~~~~~~~~~-------------------------------~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G-~v~~v~ 137 (349)
|.++........ ...+.++|||.|||+++|+++|+++|++|| .|..|.
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 998875421110 112468899999999999999999999999 999999
Q ss_pred EEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC-CeEEEEEeCCCC
Q 018875 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA-GTQVEIKKAEPK 186 (349)
Q Consensus 138 i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~-g~~i~v~~a~~~ 186 (349)
|+.+ .+++|||+|++.++|++||+.|++..|. +++|+|.+++++
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9653 3679999999999999999999999999 999999999864
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=9.4e-31 Score=239.33 Aligned_cols=169 Identities=14% Similarity=0.269 Sum_probs=144.7
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEee
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKR 92 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~ 92 (349)
.+.++|||+|||+++|+++|+++|++|| +|.+|.|+.+.. +++++||||+|.+.++|++|++.+ ..+.++.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4678999999999999999999999999 999999999874 788999999999999999999954 488999999999
Q ss_pred cCCCCCCCC---CCCCCCeEEEcCCCCC-CCHHHHHHHhhccCceEEEEEEecCC-CCCcccEEEEEecCHHHHHHHHHh
Q 018875 93 TIPKGSGQS---KDFKTKKIFVGGIPSS-VSEDELKNFFSKYGKVLEHQIIRDHE-TNRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 93 ~~~~~~~~~---~~~~~~~l~V~nL~~~-~t~e~l~~~F~~~G~v~~v~i~~~~~-~g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
+.+...... .....++|||.|||++ +|+++|+++|++||.|..|.|+.+.. |+++++||||+|.+.++|++|| .
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 887654432 3456789999999999 99999999999999999999999866 5899999999999999999999 9
Q ss_pred CCCcccCCeEEEEEeCCCC
Q 018875 168 GNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 168 l~~~~~~g~~i~v~~a~~~ 186 (349)
||+..|.++.|+|.++.++
T Consensus 273 l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 273 MNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GTTEEETTEEEEEEECCCC
T ss_pred hcCCEECCcEEEEEEecCC
Confidence 9999999999999999876
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.5e-30 Score=234.28 Aligned_cols=162 Identities=24% Similarity=0.444 Sum_probs=144.4
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcE
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQ 87 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~ 87 (349)
+......+.++|||+|||+++|+++|+++|++||+|.+|.|+++ ++||||+|.+.++|++|++.+ ..+.++.
T Consensus 14 p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 14 PGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp TTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 33445567789999999999999999999999999999999764 489999999999999999844 4889999
Q ss_pred EEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh
Q 018875 88 VEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 88 i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
|.|.++. +..+|||.|||+++|+++|+++|++||.|..|.|+.+ .++++++||||+|.+.++|++||+.
T Consensus 88 l~v~~a~----------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 88 LRIRFAT----------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CEEEECC----------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred eEeeecc----------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 9999986 4679999999999999999999999999999999999 6899999999999999999999999
Q ss_pred CCC-cccC---CeEEEEEeCCCCCC
Q 018875 168 GNM-IDMA---GTQVEIKKAEPKKS 188 (349)
Q Consensus 168 l~~-~~~~---g~~i~v~~a~~~~~ 188 (349)
|++ ..+. +++|.|+++.+...
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCCEES
T ss_pred hcCCeEEecCCCceEEEeeccccCc
Confidence 955 3333 99999999987643
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.2e-30 Score=236.88 Aligned_cols=165 Identities=16% Similarity=0.222 Sum_probs=138.2
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVE 89 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~ 89 (349)
....+.+.++|||+|||+++|+++|+++|++||+|.+|.|+.+... +++||||+|.++++|++|++ +...+.++.|.
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 111 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEII 111 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEE
Confidence 4445667899999999999999999999999999999999998743 57999999999999999997 33488999999
Q ss_pred EeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccC-ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhC
Q 018875 90 IKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (349)
Q Consensus 90 v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 168 (349)
|.++ +.++|||.|||+++|+++|+++|++|| .|..|.|+.+.. +.+++||||+|.+.++|++|++.|
T Consensus 112 v~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l 179 (292)
T 2ghp_A 112 VSHL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKL 179 (292)
T ss_dssp EEEC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHH
T ss_pred EEEC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHh
Confidence 9986 478999999999999999999999999 999999998865 778999999999999999999999
Q ss_pred CCcccCCeEEEEEeCCCCCCC
Q 018875 169 NMIDMAGTQVEIKKAEPKKSS 189 (349)
Q Consensus 169 ~~~~~~g~~i~v~~a~~~~~~ 189 (349)
++..|.++.|.|.++.++...
T Consensus 180 ~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 180 NGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp TTCEETTEECEEEECCCC---
T ss_pred CCCEeCCcEEEEEECCCCccc
Confidence 999999999999999876543
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.5e-30 Score=224.53 Aligned_cols=160 Identities=19% Similarity=0.303 Sum_probs=140.6
Q ss_pred CCceEEEcCCCc-CCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeec
Q 018875 17 SPGKIFIGGLPK-DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRT 93 (349)
Q Consensus 17 ~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~ 93 (349)
++++|||+|||+ ++|+++|+++|++||+|.+|.|+.++ ++||||+|.++++|++|++.+ ..+.++.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999999875 589999999999999999844 4889999999987
Q ss_pred CCCCCCCC-------------------------------CCCCCCeEEEcCCCCCCCHHHHHHHhhccC-ceEEEEEEec
Q 018875 94 IPKGSGQS-------------------------------KDFKTKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQIIRD 141 (349)
Q Consensus 94 ~~~~~~~~-------------------------------~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G-~v~~v~i~~~ 141 (349)
........ ...++++|||.|||+++|+++|+++|++|| .|..|.|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 65421110 123478899999999999999999999999 9999999764
Q ss_pred CCCCCcccEEEEEecCHHHHHHHHHhCCCcccC-CeEEEEEeCCCC
Q 018875 142 HETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA-GTQVEIKKAEPK 186 (349)
Q Consensus 142 ~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~-g~~i~v~~a~~~ 186 (349)
.+++|||+|++.++|++|++.||+..+. +++|+|.+++++
T Consensus 157 -----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 -----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp -----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2679999999999999999999999999 999999999864
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.3e-29 Score=230.91 Aligned_cols=156 Identities=15% Similarity=0.307 Sum_probs=143.7
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~ 93 (349)
.++++|||+|||+++|+++|+++|++|| |.++.+ .++++||||+|.++++|++|++.+ ..+.++.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4678999999999999999999999999 888888 345689999999999999999854 4889999999985
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 94 IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 94 ~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
. ...+|||.|||+++|+++|+++|++||.|..|.|+.+..++++++||||+|.+.++|++|++.|++..|
T Consensus 93 ~----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 93 P----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp C----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred C----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4 457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCC
Q 018875 174 AGTQVEIKKAEPKKS 188 (349)
Q Consensus 174 ~g~~i~v~~a~~~~~ 188 (349)
.++.|.|.++.++..
T Consensus 163 ~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 163 GPRTLYVHWTDAGQL 177 (284)
T ss_dssp TTEECEEEECCGGGC
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999987654
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=2.7e-24 Score=178.69 Aligned_cols=141 Identities=20% Similarity=0.271 Sum_probs=113.8
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC---ccCCcEE------EEeecC--CCCCCCCCCCCCCeEEEcCCC
Q 018875 47 DSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH---IINGKQV------EIKRTI--PKGSGQSKDFKTKKIFVGGIP 115 (349)
Q Consensus 47 ~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~---~~~g~~i------~v~~~~--~~~~~~~~~~~~~~l~V~nL~ 115 (349)
++.|+.+.. +++|||||+|.++++|++|++.++ .+++... ...... .............+|||.|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 466777753 689999999999999999997433 2222221 111111 111222334567899999999
Q ss_pred CCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCCCC
Q 018875 116 SSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSS 189 (349)
Q Consensus 116 ~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~~~ 189 (349)
+++|+++|+++|++||.|..|.|+.++.++++++||||+|++.++|++||+.||+..|.+++|+|.+++++...
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986543
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=5.4e-22 Score=163.33 Aligned_cols=126 Identities=17% Similarity=0.268 Sum_probs=110.0
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHcc-C--ccCCcEEEEeecCCCC------------CCCCCCCCCCeEEEcCCCCCCCH
Q 018875 56 TGQPRGFGFITYADPSVVDKVIEDT-H--IINGKQVEIKRTIPKG------------SGQSKDFKTKKIFVGGIPSSVSE 120 (349)
Q Consensus 56 ~g~~kG~afVef~~~~~a~~al~~~-~--~~~g~~i~v~~~~~~~------------~~~~~~~~~~~l~V~nL~~~~t~ 120 (349)
..+.+|+++|+|.+.++|++|++++ + .+++ .|.+.++.... .......+.++|||.|||+++|+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3467899999999999999999865 3 8888 89998776421 22334557789999999999999
Q ss_pred HHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCC
Q 018875 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187 (349)
Q Consensus 121 e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~ 187 (349)
++|+++|++||.|..|.|+.+ +++||||+|.+.++|++||+.||+..|.+++|+|+++.++.
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999876 57899999999999999999999999999999999998763
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=4.8e-22 Score=156.14 Aligned_cols=104 Identities=17% Similarity=0.436 Sum_probs=71.7
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeecC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRTI 94 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~~ 94 (349)
.+.+|||+|||+++|+++|+++|++||+|++|+|+.+. ..+++||||+|.++++|++||+.+ ..|+++.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46689999999999999999999999999999999985 348999999999999999999854 48999999999987
Q ss_pred CCCCCCC----CCCCCCeEEEcCCCCCCCHHH
Q 018875 95 PKGSGQS----KDFKTKKIFVGGIPSSVSEDE 122 (349)
Q Consensus 95 ~~~~~~~----~~~~~~~l~V~nL~~~~t~e~ 122 (349)
++..... ...+.++|||.|||+++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 7654332 233456799999999999874
No 24
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.86 E-value=4.2e-22 Score=191.06 Aligned_cols=154 Identities=15% Similarity=0.263 Sum_probs=110.2
Q ss_pred HHHHHhcCCCeeEEEEeec----C-CCCCcceEE--EEEeCCHHHHHHHHHccCc-----------c----CCcEEEEee
Q 018875 35 FNKHFGKYGDITDSVIMKD----R-YTGQPRGFG--FITYADPSVVDKVIEDTHI-----------I----NGKQVEIKR 92 (349)
Q Consensus 35 l~~~F~~~G~i~~~~i~~~----~-~~g~~kG~a--fVef~~~~~a~~al~~~~~-----------~----~g~~i~v~~ 92 (349)
|.++|.++++|..|..+.. + .+....+++ |++|.+.+++..++..++. + .-....+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7889999999887643332 1 112223333 7777665433322211000 0 000001112
Q ss_pred cCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcc
Q 018875 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~ 172 (349)
..+.........+.++|||.|||++||+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||++||++.
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 22223333344567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEeCCCCCC
Q 018875 173 MAGTQVEIKKAEPKKS 188 (349)
Q Consensus 173 ~~g~~i~v~~a~~~~~ 188 (349)
|.++.|.|.++.++..
T Consensus 169 i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 169 IDGRRVLVDVERGRTV 184 (437)
T ss_pred ECCEEEEEEEeCCCCC
Confidence 9999999999997654
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=5.8e-21 Score=145.76 Aligned_cols=82 Identities=26% Similarity=0.537 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
.+.++|||+|||+++|+++|+++|++||+|+.|.|++++.++++++||||+|+++++|++||+.||+..|.+++|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 018875 184 EP 185 (349)
Q Consensus 184 ~~ 185 (349)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 26
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=1.2e-20 Score=156.32 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=81.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.|++..|.+++|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 018875 183 AEPKK 187 (349)
Q Consensus 183 a~~~~ 187 (349)
+++..
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 98754
No 27
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=2.3e-21 Score=156.64 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=85.0
Q ss_pred EEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEE
Q 018875 62 FGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139 (349)
Q Consensus 62 ~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~ 139 (349)
++|++|++...+..|++.++ ...++ ........+....+.++|||.|||+++|+++|+++|++||.|+.|.|+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~-----~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~ 80 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGR-----GSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIP 80 (135)
T ss_dssp ----------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECC
T ss_pred cccccccCCCchhhhhhhccCCCCCCC-----CCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 57788888888888887554 11121 112222334445577899999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCCCC
Q 018875 140 RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSS 189 (349)
Q Consensus 140 ~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~~~ 189 (349)
.++.++++++||||+|++.++|++||+.|++..|.+++|+|+++++....
T Consensus 81 ~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 81 RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 99889999999999999999999999999999999999999999876543
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=143.36 Aligned_cols=84 Identities=21% Similarity=0.317 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
.+.++|||.|||+++|+++|+++|++||.|++|.|+.++.++++++||||+|++.++|++||++||+..|.++.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 018875 184 EPKK 187 (349)
Q Consensus 184 ~~~~ 187 (349)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7653
No 29
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=6e-20 Score=144.08 Aligned_cols=91 Identities=20% Similarity=0.416 Sum_probs=84.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.++.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCC
Q 018875 181 KKAEPKKSSNP 191 (349)
Q Consensus 181 ~~a~~~~~~~~ 191 (349)
++++++....+
T Consensus 100 ~~a~~~~~~~~ 110 (115)
T 2cpz_A 100 QLKRSKNDSKS 110 (115)
T ss_dssp ECCCCSCCCCC
T ss_pred EEcCCCCcCCC
Confidence 99998766543
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=138.68 Aligned_cols=88 Identities=24% Similarity=0.368 Sum_probs=82.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.+++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 018875 183 AEPKKSSN 190 (349)
Q Consensus 183 a~~~~~~~ 190 (349)
+.++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99876543
No 31
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=139.61 Aligned_cols=90 Identities=19% Similarity=0.359 Sum_probs=84.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.|++..|.++.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCC
Q 018875 181 KKAEPKKSSN 190 (349)
Q Consensus 181 ~~a~~~~~~~ 190 (349)
.+++++....
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9999876543
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=4.2e-19 Score=139.21 Aligned_cols=91 Identities=20% Similarity=0.436 Sum_probs=84.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
.....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|.++++|++||+.|++..|.++.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33455788999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCC
Q 018875 180 IKKAEPKKSSN 190 (349)
Q Consensus 180 v~~a~~~~~~~ 190 (349)
|.+++++....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99999876543
No 33
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=5.7e-20 Score=153.64 Aligned_cols=125 Identities=17% Similarity=0.236 Sum_probs=81.0
Q ss_pred EEeCCHHHHHHHHHccC----ccCCcEEEEeecCC----------------CCCCCCCCCCCCeEEEcCCCCCCCHHHHH
Q 018875 65 ITYADPSVVDKVIEDTH----IINGKQVEIKRTIP----------------KGSGQSKDFKTKKIFVGGIPSSVSEDELK 124 (349)
Q Consensus 65 Vef~~~~~a~~al~~~~----~~~g~~i~v~~~~~----------------~~~~~~~~~~~~~l~V~nL~~~~t~e~l~ 124 (349)
.+|+++++|+.|+..+. ...++.+.+.+... ....+....+.++|||.|||+++|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 67888888887776433 22233333322111 11112233456789999999999999999
Q ss_pred HHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCCCC
Q 018875 125 NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSS 189 (349)
Q Consensus 125 ~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~~~ 189 (349)
++|++||.|..|.|+.++.++++++||||+|.+.++|++||+.||+..|.+++|.|.++.++...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999876543
No 34
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=136.32 Aligned_cols=86 Identities=24% Similarity=0.546 Sum_probs=81.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
.+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018875 184 EPKKSS 189 (349)
Q Consensus 184 ~~~~~~ 189 (349)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887543
No 35
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=9.8e-20 Score=138.89 Aligned_cols=80 Identities=18% Similarity=0.483 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~ 93 (349)
.+.++|||+|||+++|+++|+++|++||+|++|.|++++.+++++|||||+|.++++|++|++.++ .+.+++|.|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456789999999999999999999999999999999999899999999999999999999998554 899999999998
Q ss_pred CC
Q 018875 94 IP 95 (349)
Q Consensus 94 ~~ 95 (349)
.|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 36
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=136.98 Aligned_cols=88 Identities=44% Similarity=0.816 Sum_probs=82.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+ |++..|.++.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred eCCCCCCCC
Q 018875 182 KAEPKKSSN 190 (349)
Q Consensus 182 ~a~~~~~~~ 190 (349)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 999876544
No 37
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-20 Score=140.43 Aligned_cols=83 Identities=20% Similarity=0.492 Sum_probs=77.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC-CcccCCeEEEEEeC
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN-MIDMAGTQVEIKKA 183 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~-~~~~~g~~i~v~~a 183 (349)
+++|||.|||+++|+++|+++|++|| +|++|+|++++.++++++||||+|+++++|++||+.|+ ...|.+++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999874 56799999999999
Q ss_pred CCCCC
Q 018875 184 EPKKS 188 (349)
Q Consensus 184 ~~~~~ 188 (349)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 38
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=139.44 Aligned_cols=90 Identities=22% Similarity=0.332 Sum_probs=83.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|.++++|++||++||+..|.++.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCC
Q 018875 181 KKAEPKKSSN 190 (349)
Q Consensus 181 ~~a~~~~~~~ 190 (349)
+++++.....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2dnm_A 88 QVARYGRRDL 97 (103)
T ss_dssp EECSSCCSCC
T ss_pred EECCcCCCCC
Confidence 9999865443
No 39
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.7e-19 Score=138.66 Aligned_cols=89 Identities=28% Similarity=0.538 Sum_probs=82.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
...+.+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.|+. .|.++.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred EEeCCCCCCC
Q 018875 180 IKKAEPKKSS 189 (349)
Q Consensus 180 v~~a~~~~~~ 189 (349)
|+++.+....
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999876443
No 40
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=137.09 Aligned_cols=87 Identities=24% Similarity=0.384 Sum_probs=80.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCC---CCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHE---TNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~---~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
.+.++|||.|||+++|+++|+++|++||.|+.|.|+.+.. ++++++||||+|.+.++|++||+.|++..|.++.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3678999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred EeCCCCCCCC
Q 018875 181 KKAEPKKSSN 190 (349)
Q Consensus 181 ~~a~~~~~~~ 190 (349)
++++++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9999876544
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=137.49 Aligned_cols=89 Identities=30% Similarity=0.505 Sum_probs=83.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.|++..|.++.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44557889999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 018875 181 KKAEPKKSS 189 (349)
Q Consensus 181 ~~a~~~~~~ 189 (349)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999887654
No 42
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=138.97 Aligned_cols=89 Identities=26% Similarity=0.482 Sum_probs=83.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.|++..|.++.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 44778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 018875 183 AEPKKSSNP 191 (349)
Q Consensus 183 a~~~~~~~~ 191 (349)
++++.....
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998765543
No 43
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=135.48 Aligned_cols=88 Identities=17% Similarity=0.428 Sum_probs=81.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
.....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++ ++++++||||+|+++++|++||+.|++..|.++.|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678899999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 018875 180 IKKAEPKKS 188 (349)
Q Consensus 180 v~~a~~~~~ 188 (349)
|.+++++..
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999987653
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=136.61 Aligned_cols=89 Identities=21% Similarity=0.446 Sum_probs=82.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
.....+.++|||.|||+++|+++|+++|++||.|..|.|+.+ ++++++||||+|++.++|++||+.||+..|.++.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344557889999999999999999999999999999999998 788999999999999999999999999999999999
Q ss_pred EEeCCCCCCCC
Q 018875 180 IKKAEPKKSSN 190 (349)
Q Consensus 180 v~~a~~~~~~~ 190 (349)
|.+++++....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2d9p_A 87 VALAQRKEERQ 97 (103)
T ss_dssp EEECSSCCCCC
T ss_pred EEEecccccCC
Confidence 99999876544
No 45
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=137.97 Aligned_cols=90 Identities=18% Similarity=0.378 Sum_probs=83.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC------CcccC
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN------MIDMA 174 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~------~~~~~ 174 (349)
....+.++|||.|||+++|+++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++||+.|+ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344578899999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CeEEEEEeCCCCCCCC
Q 018875 175 GTQVEIKKAEPKKSSN 190 (349)
Q Consensus 175 g~~i~v~~a~~~~~~~ 190 (349)
++.|+|.++.++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999999876543
No 46
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=5.2e-19 Score=136.30 Aligned_cols=89 Identities=24% Similarity=0.384 Sum_probs=82.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCC---eE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG---TQ 177 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g---~~ 177 (349)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+.||+..+.+ +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 344578999999999999999999999999999999999996 78999999999999999999999999999998 99
Q ss_pred EEEEeCCCCCCCC
Q 018875 178 VEIKKAEPKKSSN 190 (349)
Q Consensus 178 i~v~~a~~~~~~~ 190 (349)
|+|.+++++....
T Consensus 89 l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 89 LVVKFADTDKESG 101 (105)
T ss_dssp CEEEESCSSCCCS
T ss_pred EEEEECccCcccC
Confidence 9999999876543
No 47
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=137.32 Aligned_cols=91 Identities=23% Similarity=0.418 Sum_probs=83.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEec-CCCCCcccEEEEEecCHHHHHHHHHhC-CCcccCCeE
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRD-HETNRSRGFGFVIFDSEEVVDEMLSKG-NMIDMAGTQ 177 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~-~~~g~~~G~afV~f~~~~~a~~Ai~~l-~~~~~~g~~ 177 (349)
.....+.++|||.|||+++|+++|+++|++||.|+.|.|+.+ +.++++++||||+|++.++|++||+.| |+..|.++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344557899999999999999999999999999999999999 789999999999999999999999999 999999999
Q ss_pred EEEEeCCCCCCCC
Q 018875 178 VEIKKAEPKKSSN 190 (349)
Q Consensus 178 i~v~~a~~~~~~~ 190 (349)
|+|++++++....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876543
No 48
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=6.4e-19 Score=135.37 Aligned_cols=87 Identities=20% Similarity=0.394 Sum_probs=80.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++|+ |+.|.|+.++.++++++||||+|+++++|++|| +|++..|.++.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445778999999999999999999999996 999999999999999999999999999999999 89999999999999
Q ss_pred EeCCCCCCC
Q 018875 181 KKAEPKKSS 189 (349)
Q Consensus 181 ~~a~~~~~~ 189 (349)
+++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999987554
No 49
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=138.07 Aligned_cols=88 Identities=33% Similarity=0.595 Sum_probs=82.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34477899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 018875 182 KAEPKKSS 189 (349)
Q Consensus 182 ~a~~~~~~ 189 (349)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99887654
No 50
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=7.8e-19 Score=142.41 Aligned_cols=89 Identities=26% Similarity=0.481 Sum_probs=83.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
......++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||++||+..|.++.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 018875 181 KKAEPKKSS 189 (349)
Q Consensus 181 ~~a~~~~~~ 189 (349)
++++++...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999987543
No 51
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.9e-19 Score=134.53 Aligned_cols=91 Identities=25% Similarity=0.435 Sum_probs=82.9
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEE
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVE 89 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~ 89 (349)
.......+.++|||.|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||++.+.|+++.|.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~ 86 (103)
T 2cqg_A 7 GVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCD 86 (103)
T ss_dssp SCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEE
T ss_pred CCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEE
Confidence 34555677899999999999999999999999999999999999888999999999999999999999988899999999
Q ss_pred EeecCCCCCCC
Q 018875 90 IKRTIPKGSGQ 100 (349)
Q Consensus 90 v~~~~~~~~~~ 100 (349)
|+++.++....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cqg_A 87 CKLPNSKQSQD 97 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EEecCCCCcCC
Confidence 99998775544
No 52
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=135.19 Aligned_cols=86 Identities=27% Similarity=0.458 Sum_probs=81.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEE-EEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH-QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v-~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
.+.++|||.|||+++|+++|+++|++||.|..| .|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 367899999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 018875 183 AEPKKSS 189 (349)
Q Consensus 183 a~~~~~~ 189 (349)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9887543
No 53
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=138.66 Aligned_cols=86 Identities=27% Similarity=0.481 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||.|||+++|+++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+.|++..|.++.|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 018875 183 AEPKKSS 189 (349)
Q Consensus 183 a~~~~~~ 189 (349)
++++...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876543
No 54
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=133.71 Aligned_cols=85 Identities=26% Similarity=0.482 Sum_probs=80.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||++||+..|.+++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC
Q 018875 181 KKAEP 185 (349)
Q Consensus 181 ~~a~~ 185 (349)
+++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99874
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=7.3e-20 Score=138.29 Aligned_cols=83 Identities=22% Similarity=0.386 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCc--eEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCc----ccCCe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGK--VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI----DMAGT 176 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~--v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~----~~~g~ 176 (349)
...-.+|||+|||+++|+|+|+++|++||. |.+|+|++|+.+++++|||||+|.++++|++||+.||+. .|+++
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345679999999999999999999999995 668999999999999999999999999999999999886 48999
Q ss_pred EEEEEeCCC
Q 018875 177 QVEIKKAEP 185 (349)
Q Consensus 177 ~i~v~~a~~ 185 (349)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999975
No 56
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=3e-19 Score=137.93 Aligned_cols=89 Identities=25% Similarity=0.468 Sum_probs=82.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc---CCeE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM---AGTQ 177 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~---~g~~ 177 (349)
..+.+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3455788999999999999999999999999999999999999999999999999999999999999999988 8999
Q ss_pred EEEEeCCCCCCC
Q 018875 178 VEIKKAEPKKSS 189 (349)
Q Consensus 178 i~v~~a~~~~~~ 189 (349)
|+|.++.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999987654
No 57
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.2e-19 Score=133.00 Aligned_cols=84 Identities=25% Similarity=0.474 Sum_probs=79.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCC
Q 018875 181 KKAE 184 (349)
Q Consensus 181 ~~a~ 184 (349)
++++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9975
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=132.54 Aligned_cols=82 Identities=21% Similarity=0.446 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
+.++|||.|||+++|+++|+++|++||.|.+|.|+.++.++++++||||+|++.++|++|++.|++..|.++.|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CC
Q 018875 185 PK 186 (349)
Q Consensus 185 ~~ 186 (349)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 59
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=4.8e-19 Score=130.37 Aligned_cols=82 Identities=28% Similarity=0.504 Sum_probs=78.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCC
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP 185 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~ 185 (349)
+.+|||.|||+++++++|+++|++||.|..|.|+.+..++++++||||+|+++++|++|++.|++..|.+++|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 018875 186 KK 187 (349)
Q Consensus 186 ~~ 187 (349)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=7.1e-19 Score=137.92 Aligned_cols=92 Identities=20% Similarity=0.418 Sum_probs=81.4
Q ss_pred CCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 9 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
.....+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.++ .|.++
T Consensus 16 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 16 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp BSCCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CccCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3444555677999999999999999999999999999999999999899999999999999999999998544 89999
Q ss_pred EEEEeecCCCCCCC
Q 018875 87 QVEIKRTIPKGSGQ 100 (349)
Q Consensus 87 ~i~v~~~~~~~~~~ 100 (349)
.|.|+++.++....
T Consensus 96 ~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 96 RLKVQLKRSKNDSK 109 (115)
T ss_dssp ECEEECCCCSCCCC
T ss_pred EEEEEEcCCCCcCC
Confidence 99999998765543
No 61
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=133.07 Aligned_cols=95 Identities=20% Similarity=0.362 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC-
Q 018875 3 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH- 81 (349)
Q Consensus 3 ~~s~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~- 81 (349)
++..+......+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|.+.++|++|++.++
T Consensus 2 ssg~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g 80 (100)
T 2do4_A 2 SSGSSGVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDG 80 (100)
T ss_dssp CCCCSSCCCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCcCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCC
Confidence 4445555666677889999999999999999999999999999999999998 89999999999999999999998544
Q ss_pred -ccCCcEEEEeecCCCCC
Q 018875 82 -IINGKQVEIKRTIPKGS 98 (349)
Q Consensus 82 -~~~g~~i~v~~~~~~~~ 98 (349)
.+.++.|.|+++.++..
T Consensus 81 ~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 81 MTIKENIIKVAISNSGPS 98 (100)
T ss_dssp EESSSCEEEEEECCCCSC
T ss_pred CEECCEEEEEEECCCCCC
Confidence 89999999999987543
No 62
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=6e-20 Score=137.61 Aligned_cols=84 Identities=14% Similarity=0.325 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYG--KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G--~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
.+|||.|||+++|+++|+++|++|| .|.+|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 018875 185 PKKSSN 190 (349)
Q Consensus 185 ~~~~~~ 190 (349)
+.....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 875443
No 63
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=136.03 Aligned_cols=81 Identities=22% Similarity=0.444 Sum_probs=74.7
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc-C--ccCCcEEEEeec
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-H--IINGKQVEIKRT 93 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~-~--~~~g~~i~v~~~ 93 (349)
+++|||+|||+++|+++|+++|++|| +|++|+|++++.+++++|||||+|.++++|++||+.+ + .+.+++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 8999999999999999999999999999999999854 3 689999999999
Q ss_pred CCCCC
Q 018875 94 IPKGS 98 (349)
Q Consensus 94 ~~~~~ 98 (349)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 64
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-19 Score=138.35 Aligned_cols=89 Identities=25% Similarity=0.383 Sum_probs=83.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceE--------EEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcc
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL--------EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID 172 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~--------~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~ 172 (349)
....+.++|||.|||+++|+++|+++|++||.|. .|.|+.++.++++++||||+|.++++|++||+.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3455788999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred cCCeEEEEEeCCCCCCC
Q 018875 173 MAGTQVEIKKAEPKKSS 189 (349)
Q Consensus 173 ~~g~~i~v~~a~~~~~~ 189 (349)
|.++.|+|.+++++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999987654
No 65
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=136.52 Aligned_cols=96 Identities=33% Similarity=0.615 Sum_probs=84.5
Q ss_pred CCCCCCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC-c
Q 018875 4 KSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-I 82 (349)
Q Consensus 4 ~s~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~-~ 82 (349)
...+....+.++.+.++|||.|||+++|+++|+++|++|++|++|+|+.++.++++++||||+|.+.++|++||+.++ .
T Consensus 3 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~ 82 (116)
T 2cqd_A 3 SGSSGMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPI 82 (116)
T ss_dssp CCCCCCCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCE
T ss_pred CCCCCCCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCc
Confidence 344455556677788999999999999999999999999999999999999899999999999999999999999554 8
Q ss_pred cCCcEEEEeecCCCCCC
Q 018875 83 INGKQVEIKRTIPKGSG 99 (349)
Q Consensus 83 ~~g~~i~v~~~~~~~~~ 99 (349)
|.++.|.|+++.+....
T Consensus 83 ~~g~~l~V~~a~~~~~~ 99 (116)
T 2cqd_A 83 IDGRKANVNLAYLGAKP 99 (116)
T ss_dssp ETTEECEEEESTTTCCC
T ss_pred CCCEEEEEEEcccCCCc
Confidence 99999999999765443
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=132.93 Aligned_cols=89 Identities=27% Similarity=0.526 Sum_probs=80.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.. +++||||+|++.++|++||++|++..|.++.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557889999999999999999999999999999999988643 8899999999999999999999999999999999
Q ss_pred EeCCCCCCCCC
Q 018875 181 KKAEPKKSSNP 191 (349)
Q Consensus 181 ~~a~~~~~~~~ 191 (349)
.++.++.....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cq3_A 88 NNATARVMTNS 98 (103)
T ss_dssp EECCSSCCCCC
T ss_pred EEcccCCCCCC
Confidence 99998765543
No 67
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.7e-19 Score=134.60 Aligned_cols=86 Identities=20% Similarity=0.426 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCC-CCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHET-NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~-g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
...+.++|||.|||+++|+++|+++|++|| |+.|.|+.++.+ +++++||||+|+++++|++|| .|++..|.++.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445678999999999999999999999999 999999999887 999999999999999999999 99999999999999
Q ss_pred EeCCCCCCC
Q 018875 181 KKAEPKKSS 189 (349)
Q Consensus 181 ~~a~~~~~~ 189 (349)
+++.++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999987543
No 68
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=4.8e-19 Score=131.00 Aligned_cols=82 Identities=27% Similarity=0.488 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||.|||+++++++|+++|++||.|..|.|+.+..++++++||||+|+++++|++|++.||+..|.+++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 018875 183 AE 184 (349)
Q Consensus 183 a~ 184 (349)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 69
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.9e-18 Score=135.48 Aligned_cols=93 Identities=22% Similarity=0.468 Sum_probs=83.3
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCC
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IING 85 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g 85 (349)
+.....+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.++ .|.+
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 5 SSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp CCSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 44555666788999999999999999999999999999999999998899999999999999999999998554 8999
Q ss_pred cEEEEeecCCCCCCC
Q 018875 86 KQVEIKRTIPKGSGQ 100 (349)
Q Consensus 86 ~~i~v~~~~~~~~~~ 100 (349)
+.|.|+++.++....
T Consensus 85 ~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 85 RQIRTNWATRKPPAP 99 (115)
T ss_dssp EECEEEESSCCCCCS
T ss_pred EEEEEEEccCCCCCC
Confidence 999999998765544
No 70
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.1e-19 Score=135.96 Aligned_cols=89 Identities=34% Similarity=0.647 Sum_probs=82.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
.....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+. +++.|.++.|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEeCCCCCCC
Q 018875 180 IKKAEPKKSS 189 (349)
Q Consensus 180 v~~a~~~~~~ 189 (349)
|+++.++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999887654
No 71
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.8e-19 Score=136.27 Aligned_cols=86 Identities=16% Similarity=0.355 Sum_probs=81.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|..|.|+.++.++++++||||+|++.++|++||++|++..|.++.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 018875 182 KAEPKK 187 (349)
Q Consensus 182 ~a~~~~ 187 (349)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998764
No 72
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=5.8e-20 Score=161.59 Aligned_cols=82 Identities=16% Similarity=0.347 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYG--KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G--~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..++|||.|||+++|+++|+++|++|| .|++|+|+.++.++++++||||+|++.++|++||++||++.|.++.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 018875 183 AEPK 186 (349)
Q Consensus 183 a~~~ 186 (349)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8764
No 73
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=134.10 Aligned_cols=87 Identities=28% Similarity=0.422 Sum_probs=81.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhc-cCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcc-cCCeEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSK-YGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID-MAGTQVE 179 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~-~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~-~~g~~i~ 179 (349)
...+.++|||.|||+++|+++|+++|++ ||.|..|.|+.++ ++++++||||+|++.++|++||+.|++.. |.++.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3446789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EEeCCCCCCC
Q 018875 180 IKKAEPKKSS 189 (349)
Q Consensus 180 v~~a~~~~~~ 189 (349)
|+++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999876544
No 74
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4e-18 Score=133.30 Aligned_cols=87 Identities=24% Similarity=0.289 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+.||+..|.++.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34467899999999999999999999999999999999996 58999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 018875 182 KAEPKKSS 189 (349)
Q Consensus 182 ~a~~~~~~ 189 (349)
+++.....
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99865433
No 75
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=131.79 Aligned_cols=87 Identities=22% Similarity=0.358 Sum_probs=79.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.+ +++||||+|+++++|++||+.|++..|.++.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34557889999999999999999999999999999999998554 6889999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 018875 181 KKAEPKKSS 189 (349)
Q Consensus 181 ~~a~~~~~~ 189 (349)
.+++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999986543
No 76
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=133.07 Aligned_cols=80 Identities=25% Similarity=0.373 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCC-----eE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG-----TQ 177 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g-----~~ 177 (349)
....++|||.|||+++|+++|+++|++||+|+.|.|+.+ +||||+|+++++|++||++||+..|.+ ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 346789999999999999999999999999999999876 699999999999999999999999999 99
Q ss_pred EEEEeCCCCCCC
Q 018875 178 VEIKKAEPKKSS 189 (349)
Q Consensus 178 i~v~~a~~~~~~ 189 (349)
|+|++++++...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999986543
No 77
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=9e-19 Score=132.75 Aligned_cols=85 Identities=20% Similarity=0.392 Sum_probs=80.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
++++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|++.++|++|++.|++..|.++.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 018875 185 PKKSS 189 (349)
Q Consensus 185 ~~~~~ 189 (349)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87543
No 78
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-18 Score=130.79 Aligned_cols=88 Identities=33% Similarity=0.519 Sum_probs=80.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+. .+.|.++.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEE
Confidence 3455778999999999999999999999999999999999999999999999999999999999994 67899999999
Q ss_pred EeCCCCCCCC
Q 018875 181 KKAEPKKSSN 190 (349)
Q Consensus 181 ~~a~~~~~~~ 190 (349)
.++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqg_A 88 KLPNSKQSQD 97 (103)
T ss_dssp ECCCTTCCCC
T ss_pred EecCCCCcCC
Confidence 9999876543
No 79
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.9e-19 Score=133.23 Aligned_cols=85 Identities=20% Similarity=0.319 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceE-EEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeE----
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL-EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ---- 177 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~-~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~---- 177 (349)
..+.++|||.|||+++|+++|+++|++||.|. .|.|+.++.++++++||||+|+++++|++||+.||+..|.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34688999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q 018875 178 VEIKKAEPKK 187 (349)
Q Consensus 178 i~v~~a~~~~ 187 (349)
|+|+++++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998754
No 80
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=133.91 Aligned_cols=92 Identities=20% Similarity=0.416 Sum_probs=82.4
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCC
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IING 85 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g 85 (349)
......+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.++ .|.+
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 5 SSGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp SSCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 34445666788999999999999999999999999999999999998899999999999999999999999654 8999
Q ss_pred cEEEEeecCCCCCC
Q 018875 86 KQVEIKRTIPKGSG 99 (349)
Q Consensus 86 ~~i~v~~~~~~~~~ 99 (349)
+.|.|+++.++...
T Consensus 85 ~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 85 KPIRVNKASAHNKN 98 (105)
T ss_dssp CBCEEEETTTTSCC
T ss_pred eEEEEEECCCCCcC
Confidence 99999999876543
No 81
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=8.7e-19 Score=137.44 Aligned_cols=83 Identities=25% Similarity=0.526 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
...+|||+|||+++|+++|+++|++||.|++|+|+.++ ..+++||||+|+++++|++||++|++..|.+++|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999985 3479999999999999999999999999999999999998
Q ss_pred CCCCC
Q 018875 185 PKKSS 189 (349)
Q Consensus 185 ~~~~~ 189 (349)
++...
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 76543
No 82
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=5.9e-19 Score=140.64 Aligned_cols=87 Identities=16% Similarity=0.352 Sum_probs=81.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.||+..|.++.|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 018875 182 KAEPKKS 188 (349)
Q Consensus 182 ~a~~~~~ 188 (349)
++.++..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9987654
No 83
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=8.3e-19 Score=140.36 Aligned_cols=87 Identities=26% Similarity=0.477 Sum_probs=82.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||++|++..|.+++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 018875 181 KKAEPKK 187 (349)
Q Consensus 181 ~~a~~~~ 187 (349)
+++.+++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998764
No 84
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=135.20 Aligned_cols=81 Identities=12% Similarity=0.240 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
+.+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|++.++|++|+++++ .+.++.|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999999655 89999999998
Q ss_pred cCC
Q 018875 93 TIP 95 (349)
Q Consensus 93 ~~~ 95 (349)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 864
No 85
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=134.72 Aligned_cols=87 Identities=25% Similarity=0.560 Sum_probs=81.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++||+.|++..|.++.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 018875 181 KKAEPKK 187 (349)
Q Consensus 181 ~~a~~~~ 187 (349)
++++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 86
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=132.33 Aligned_cols=89 Identities=20% Similarity=0.364 Sum_probs=80.6
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
...+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.++ .|.++.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34456778999999999999999999999999999999999998899999999999999999999999554 8999999
Q ss_pred EEeecCCCCCC
Q 018875 89 EIKRTIPKGSG 99 (349)
Q Consensus 89 ~v~~~~~~~~~ 99 (349)
.|+++.++...
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 87
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=130.54 Aligned_cols=88 Identities=20% Similarity=0.453 Sum_probs=79.9
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
....+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.++ .|.++.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345678999999999999999999999999999999999998899999999999999999999998655 889999999
Q ss_pred eecCCCCCCC
Q 018875 91 KRTIPKGSGQ 100 (349)
Q Consensus 91 ~~~~~~~~~~ 100 (349)
+++.++....
T Consensus 83 ~~a~~~~~~~ 92 (99)
T 1whw_A 83 LPSTIKKEAS 92 (99)
T ss_dssp EECCCCSTTC
T ss_pred EEcCCCcccc
Confidence 9998876543
No 88
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=133.79 Aligned_cols=88 Identities=25% Similarity=0.417 Sum_probs=80.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCc-eEEEEEE-ecCCCCCcccEEEEEecCHHHHHHHHHhCC--CcccCCeEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGK-VLEHQII-RDHETNRSRGFGFVIFDSEEVVDEMLSKGN--MIDMAGTQV 178 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~-v~~v~i~-~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~--~~~~~g~~i 178 (349)
..+.++|||.|||+++|+++|+++|++||. |..|.|+ .++.++++++||||+|.++++|++||+.|+ ...|.++.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 788888999999999999999999999996 689999999
Q ss_pred EEEeCCCCCCCC
Q 018875 179 EIKKAEPKKSSN 190 (349)
Q Consensus 179 ~v~~a~~~~~~~ 190 (349)
+|++++++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999876543
No 89
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=9.6e-19 Score=130.18 Aligned_cols=83 Identities=19% Similarity=0.398 Sum_probs=78.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCC-cccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNR-SRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~-~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
+.++|||.|||+++|+++|+++|++||.|..|.|+.+..+.. +++||||+|++.++|++|++.||+..|.++.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 578999999999999999999999999999999999887766 8999999999999999999999999999999999999
Q ss_pred CCCC
Q 018875 184 EPKK 187 (349)
Q Consensus 184 ~~~~ 187 (349)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 90
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=131.63 Aligned_cols=85 Identities=19% Similarity=0.347 Sum_probs=79.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEE--------EEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCc
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE--------HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI 171 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~--------v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~ 171 (349)
.....+.++|||.|||+++|+++|+++|++||.|.. |.|+.++.++++++||||+|++.++|++||+.|++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344557889999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccCCeEEEEEeCC
Q 018875 172 DMAGTQVEIKKAE 184 (349)
Q Consensus 172 ~~~g~~i~v~~a~ 184 (349)
.|.++.|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 91
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.1e-19 Score=137.50 Aligned_cols=85 Identities=34% Similarity=0.659 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
.+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+. ++..|.++.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3568999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred CCCCCC
Q 018875 184 EPKKSS 189 (349)
Q Consensus 184 ~~~~~~ 189 (349)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 987654
No 92
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.7e-18 Score=132.44 Aligned_cols=85 Identities=16% Similarity=0.405 Sum_probs=77.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+.+ .++++||||+|+++++|++||+.||+..|.++.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34557789999999999999999999999999999999654 457899999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 018875 181 KKAEPKKS 188 (349)
Q Consensus 181 ~~a~~~~~ 188 (349)
++++++..
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99987654
No 93
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=132.93 Aligned_cols=93 Identities=17% Similarity=0.350 Sum_probs=82.6
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHcc---Ccc
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKD-RYTGQPRGFGFITYADPSVVDKVIEDT---HII 83 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~-~~~g~~kG~afVef~~~~~a~~al~~~---~~~ 83 (349)
+........+.++|||+|||+++|+++|+++|++||+|++|.|+.+ +.++++++||||+|.+.++|++||+.+ ..|
T Consensus 5 s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 5 SSGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp CCCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 3445566678899999999999999999999999999999999999 778999999999999999999999965 389
Q ss_pred CCcEEEEeecCCCCCCC
Q 018875 84 NGKQVEIKRTIPKGSGQ 100 (349)
Q Consensus 84 ~g~~i~v~~~~~~~~~~ 100 (349)
.++.|.|+++.++....
T Consensus 85 ~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 85 YGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp SSCBCEEEECCCCCCCC
T ss_pred CCCEEEEEeCCCCCCCC
Confidence 99999999998765543
No 94
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-18 Score=129.97 Aligned_cols=89 Identities=38% Similarity=0.721 Sum_probs=80.3
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v 90 (349)
..+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+ +.+.|.++.|.|
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V 83 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 83 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEE
Confidence 4455678999999999999999999999999999999999998899999999999999999999998 444899999999
Q ss_pred eecCCCCCCC
Q 018875 91 KRTIPKGSGQ 100 (349)
Q Consensus 91 ~~~~~~~~~~ 100 (349)
+++.++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9998765543
No 95
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.3e-19 Score=133.14 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
.....++|||.|||+++|+++|+++|++||.|+.+.++.++.++++++||||+|+++++|++||+.||+..|.++.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34467899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eCCCC
Q 018875 182 KAEPK 186 (349)
Q Consensus 182 ~a~~~ 186 (349)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98764
No 96
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=129.81 Aligned_cols=88 Identities=20% Similarity=0.363 Sum_probs=79.3
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCC
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IING 85 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g 85 (349)
......++.+.++|||.|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++|++.++ .+.+
T Consensus 5 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 5 SSGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CCCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34455566778999999999999999999999999999999999999889999999999999999999999554 8999
Q ss_pred cEEEEeecCC
Q 018875 86 KQVEIKRTIP 95 (349)
Q Consensus 86 ~~i~v~~~~~ 95 (349)
+.|.|+++.+
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 9999998763
No 97
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=132.47 Aligned_cols=93 Identities=14% Similarity=0.312 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--------
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-------- 79 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-------- 79 (349)
..+.+.+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 5 SSGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred CCCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 344556677889999999999999999999999999999999999998999999999999999999999984
Q ss_pred cCccCCcEEEEeecCCCCCCC
Q 018875 80 THIINGKQVEIKRTIPKGSGQ 100 (349)
Q Consensus 80 ~~~~~g~~i~v~~~~~~~~~~ 100 (349)
...|.++.|.|+++.++....
T Consensus 85 ~~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEESSSCEEEEECCCCCCCCC
T ss_pred CcEEcCEEEEEEECCCCccCC
Confidence 448999999999998765544
No 98
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.2e-18 Score=135.49 Aligned_cols=86 Identities=20% Similarity=0.332 Sum_probs=81.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+.|++..|.++.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 018875 182 KAEPKK 187 (349)
Q Consensus 182 ~a~~~~ 187 (349)
++.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998764
No 99
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.4e-18 Score=136.78 Aligned_cols=83 Identities=19% Similarity=0.420 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+.||+..|.++.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q 018875 182 KAE 184 (349)
Q Consensus 182 ~a~ 184 (349)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 100
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=134.32 Aligned_cols=89 Identities=16% Similarity=0.260 Sum_probs=80.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHH---HHhhccCceEEEEEEecCCCC---CcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELK---NFFSKYGKVLEHQIIRDHETN---RSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~---~~F~~~G~v~~v~i~~~~~~g---~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
.....+.++|||.|||+++++++|+ ++|++||+|++|.|+.++.++ ++++||||+|+++++|++||+.||+..|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3445578899999999999999999 999999999999999887644 5669999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCC
Q 018875 174 AGTQVEIKKAEPKKS 188 (349)
Q Consensus 174 ~g~~i~v~~a~~~~~ 188 (349)
++++|+|+++.++..
T Consensus 89 ~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 89 DGRTLKASLGTTKYC 103 (111)
T ss_dssp TTEEEEEESCCCCSC
T ss_pred CCEEEEEEecccccc
Confidence 999999999998753
No 101
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=4.8e-18 Score=130.83 Aligned_cols=89 Identities=17% Similarity=0.340 Sum_probs=78.5
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCC--
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IING-- 85 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g-- 85 (349)
.......+.++|||+|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|.+.++|++||+.++ .+.+
T Consensus 7 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~ 85 (105)
T 2dnh_A 7 GSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA 85 (105)
T ss_dssp CCCCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 334455678999999999999999999999999999999999998 79999999999999999999998554 6777
Q ss_pred -cEEEEeecCCCCCC
Q 018875 86 -KQVEIKRTIPKGSG 99 (349)
Q Consensus 86 -~~i~v~~~~~~~~~ 99 (349)
+.|.|+++.++...
T Consensus 86 ~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 86 SSSLVVKFADTDKES 100 (105)
T ss_dssp SSCCEEEESCSSCCC
T ss_pred CccEEEEECccCccc
Confidence 99999999876554
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=133.25 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC--CcccCCeEEEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN--MIDMAGTQVEI 180 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~--~~~~~g~~i~v 180 (349)
+.+.++|||+|||+++|+++|+++|++||.|++|.|+++ ++||||+|+++++|++||+.|+ ...|.+++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 347789999999999999999999999999999999875 6799999999999999999875 47899999999
Q ss_pred EeCCCCCCCC
Q 018875 181 KKAEPKKSSN 190 (349)
Q Consensus 181 ~~a~~~~~~~ 190 (349)
.+++++....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998876544
No 103
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=2e-19 Score=145.39 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=74.5
Q ss_pred eEEEEEeCCHHHHHHHHHccCcc-CCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEE
Q 018875 61 GFGFITYADPSVVDKVIEDTHII-NGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139 (349)
Q Consensus 61 G~afVef~~~~~a~~al~~~~~~-~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~ 139 (349)
++||.+|..++.+..++.+.... .+....-.. ............++|||.|||+++|+++|+++|++|+ |+.|.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~--g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGS--GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCC--CCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 57888888888877777654422 222211111 1111122344678999999999999999999999999 6699999
Q ss_pred ecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCC
Q 018875 140 RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187 (349)
Q Consensus 140 ~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~ 187 (349)
.++. +++++||||+|+++++|++|| +++...|.++.|+|.++.++.
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 9966 999999999999999999999 789999999999999988654
No 104
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=6.3e-18 Score=129.79 Aligned_cols=80 Identities=28% Similarity=0.485 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||.|||+++|+++|+++|++||.|+.|.|+++ ||||+|+++++|++||+.|++..|.++.|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--------EEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 346789999999999999999999999999999999744 999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 018875 183 AEPKKSSN 190 (349)
Q Consensus 183 a~~~~~~~ 190 (349)
++++....
T Consensus 80 a~~~~~~~ 87 (103)
T 2dgu_A 80 AKPPDQKR 87 (103)
T ss_dssp CCCCCCCC
T ss_pred cCCCcccc
Confidence 99876544
No 105
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=130.95 Aligned_cols=83 Identities=25% Similarity=0.471 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++++++|+++|++||.|+.|.|+.++. +++++||||+|+++++|++||+.||+..|.++.|+|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345678999999999999999999999999999999999975 8899999999999999999999999999999999999
Q ss_pred eCCC
Q 018875 182 KAEP 185 (349)
Q Consensus 182 ~a~~ 185 (349)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 106
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=2.6e-18 Score=128.14 Aligned_cols=81 Identities=22% Similarity=0.419 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
+.++|||.|||+++|+++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++|+ .|++..|.++.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4579999999999999999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred CC
Q 018875 185 PK 186 (349)
Q Consensus 185 ~~ 186 (349)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 107
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=127.92 Aligned_cols=83 Identities=24% Similarity=0.393 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
.....++|||.|||+++|+++|+++|++| .|..|.|+.+ .++++++||||+|+++++|++||+ |++..|.++.|+|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999999 889999999999999999999999 99999999999999
Q ss_pred eCCCCC
Q 018875 182 KAEPKK 187 (349)
Q Consensus 182 ~a~~~~ 187 (349)
+++++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 108
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=133.19 Aligned_cols=91 Identities=20% Similarity=0.427 Sum_probs=79.5
Q ss_pred CCCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccC
Q 018875 7 SDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIIN 84 (349)
Q Consensus 7 ~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~ 84 (349)
+..+.+....+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++|++.+ ..|.
T Consensus 12 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 12 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp ---CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 34445555667889999999999999999999999999999999999989999999999999999999999854 4899
Q ss_pred CcEEEEeecCCCC
Q 018875 85 GKQVEIKRTIPKG 97 (349)
Q Consensus 85 g~~i~v~~~~~~~ 97 (349)
++.|.|+++.++.
T Consensus 92 g~~l~V~~a~~~~ 104 (106)
T 1p27_B 92 GQPISVDWCFVRG 104 (106)
T ss_dssp SSBCEEEESEESS
T ss_pred CcEEEEEeecCCC
Confidence 9999999987653
No 109
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=132.54 Aligned_cols=93 Identities=37% Similarity=0.729 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCCc
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGK 86 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~ 86 (349)
......+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|+++++|++||+. ...|.++
T Consensus 6 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 85 (105)
T 2dh8_A 6 SGMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR 85 (105)
T ss_dssp CCCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTE
T ss_pred CCCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCE
Confidence 344455677889999999999999999999999999999999999988999999999999999999999995 4489999
Q ss_pred EEEEeecCCCCCCC
Q 018875 87 QVEIKRTIPKGSGQ 100 (349)
Q Consensus 87 ~i~v~~~~~~~~~~ 100 (349)
.|.|+++.++....
T Consensus 86 ~l~V~~a~~~~~~~ 99 (105)
T 2dh8_A 86 NIDPKPCTPRGMQP 99 (105)
T ss_dssp EEBCCCSCCSSCCT
T ss_pred EEEEEEccCCCCCC
Confidence 99999988765543
No 110
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=3.4e-18 Score=127.05 Aligned_cols=82 Identities=35% Similarity=0.739 Sum_probs=74.2
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCCcEEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEI 90 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~~i~v 90 (349)
+.++.+.++|||+|||+++|+++|+++|++||+|+++.|+.++.++++++||||+|.++++|++|++. .+.++++.|.|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 45567889999999999999999999999999999999999998999999999999999999999984 34799999999
Q ss_pred eec
Q 018875 91 KRT 93 (349)
Q Consensus 91 ~~~ 93 (349)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 111
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=4e-18 Score=126.63 Aligned_cols=81 Identities=36% Similarity=0.706 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
.+.+.++|||.|||+++|+++|+++|++||.|..|.|+.++.++++++||||+|+++++|++||+. ++..|+++.|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 345788999999999999999999999999999999999999999999999999999999999975 7788999999998
Q ss_pred eC
Q 018875 182 KA 183 (349)
Q Consensus 182 ~a 183 (349)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 112
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=132.44 Aligned_cols=89 Identities=19% Similarity=0.318 Sum_probs=80.3
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQV 88 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i 88 (349)
.+.+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.+ ..|.++.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3455677899999999999999999999999999999999999988999999999999999999999954 48999999
Q ss_pred EEeecCCCCCC
Q 018875 89 EIKRTIPKGSG 99 (349)
Q Consensus 89 ~v~~~~~~~~~ 99 (349)
.|+++.+....
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dnm_A 86 RVQVARYGRRD 96 (103)
T ss_dssp EEEECSSCCSC
T ss_pred EEEECCcCCCC
Confidence 99999876543
No 113
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=129.53 Aligned_cols=84 Identities=21% Similarity=0.411 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
.+.+.++|||.|||+++|+++|+++|++|+.| .|+.+ .++++++||||+|+++++|++||+.|++..|.++.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45578999999999999999999999999977 55665 678899999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 018875 182 KAEPKKSS 189 (349)
Q Consensus 182 ~a~~~~~~ 189 (349)
+++++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99987543
No 114
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=3.1e-18 Score=128.58 Aligned_cols=84 Identities=25% Similarity=0.413 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||.|||+++|+++|+++|++||.|+.|.|+.+ ++++++||||+|++.++|++||++|++..|.++.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999984 788999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018875 183 AEPKKS 188 (349)
Q Consensus 183 a~~~~~ 188 (349)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 988654
No 115
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=129.86 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 105 KTKKIFVGGIPSSVSEDELK----NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~----~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
+.++|||.|||+++++++|+ ++|++||.|++|.|+.++.+ ++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 56799999999999999999 99999999999999998766 779999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 018875 181 KKAEPKKS 188 (349)
Q Consensus 181 ~~a~~~~~ 188 (349)
+++++...
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99987643
No 116
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=9.1e-19 Score=132.23 Aligned_cols=82 Identities=17% Similarity=0.340 Sum_probs=73.9
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCC--eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC------ccCC
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGD--ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH------IING 85 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~--i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~------~~~g 85 (349)
....-+||||+|||+++|+++|+++|++||. |.+|+|++++.+++++|||||+|.++++|++|++.++ .+++
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4556789999999999999999999999995 6799999999999999999999999999999998543 4889
Q ss_pred cEEEEeecCC
Q 018875 86 KQVEIKRTIP 95 (349)
Q Consensus 86 ~~i~v~~~~~ 95 (349)
++|.|+++.+
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 117
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=131.28 Aligned_cols=89 Identities=22% Similarity=0.428 Sum_probs=80.0
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
.....+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++|++.++ .|.++.|.
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3345678999999999999999999999999999999999998899999999999999999999998544 89999999
Q ss_pred EeecCCCCCCC
Q 018875 90 IKRTIPKGSGQ 100 (349)
Q Consensus 90 v~~~~~~~~~~ 100 (349)
|+++.++....
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 2cqb_A 86 VNLAKPMRIKE 96 (102)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998765544
No 118
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=3.9e-18 Score=132.40 Aligned_cols=86 Identities=31% Similarity=0.623 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|..|.|+.++.++++++||||+|++.++|++||+.++ ..|.++.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999875 99999999999
Q ss_pred eCCCCCC
Q 018875 182 KAEPKKS 188 (349)
Q Consensus 182 ~a~~~~~ 188 (349)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987654
No 119
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.5e-18 Score=129.67 Aligned_cols=91 Identities=21% Similarity=0.409 Sum_probs=80.3
Q ss_pred CCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 9 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
........+.++|||+|||+++|+++|+++|++||+|++|.|+.+ ++++++||||+|.+.++|++||+.++ .|.++
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 6 SGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 344455668899999999999999999999999999999999998 78899999999999999999999544 89999
Q ss_pred EEEEeecCCCCCCCC
Q 018875 87 QVEIKRTIPKGSGQS 101 (349)
Q Consensus 87 ~i~v~~~~~~~~~~~ 101 (349)
.|.|+++.++.....
T Consensus 84 ~l~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 84 PLYVALAQRKEERQS 98 (103)
T ss_dssp BCEEEECSSCCCCCC
T ss_pred EEEEEEecccccCCC
Confidence 999999987765443
No 120
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=4.5e-19 Score=135.53 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=78.7
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCC-eE
Q 018875 105 KTKKIFVGGIPS------SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG-TQ 177 (349)
Q Consensus 105 ~~~~l~V~nL~~------~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g-~~ 177 (349)
.+++|||.|||+ ++++++|+++|++||.|..|.|+.++.++++++||||+|+++++|++||+.||+..|.+ +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEeCCCC
Q 018875 178 VEIKKAEPK 186 (349)
Q Consensus 178 i~v~~a~~~ 186 (349)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 121
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=3.3e-18 Score=132.80 Aligned_cols=92 Identities=34% Similarity=0.643 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc-CccCC
Q 018875 7 SDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIING 85 (349)
Q Consensus 7 ~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~-~~~~g 85 (349)
+.....+...+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.+ +.+.+
T Consensus 14 ~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g 93 (109)
T 2rs2_A 14 LVPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDS 93 (109)
T ss_dssp ------------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETT
T ss_pred CCccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCC
Confidence 33444556678899999999999999999999999999999999999988999999999999999999999955 48999
Q ss_pred cEEEEeecCCCCC
Q 018875 86 KQVEIKRTIPKGS 98 (349)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (349)
+.|.|+++.++..
T Consensus 94 ~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 94 KTIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEEECCCCCC
T ss_pred EEEEEEEccCCCC
Confidence 9999999987654
No 122
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=131.46 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
.....++|||.|||+++|+++|+++|++|+.| .|.|+.++ ++++++||||+|+++++|++||+ +|.+.|.++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999965 99999997 89999999999999999999995 79999999999999
Q ss_pred eCCCCC
Q 018875 182 KAEPKK 187 (349)
Q Consensus 182 ~a~~~~ 187 (349)
++.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887654
No 123
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=8.6e-18 Score=129.00 Aligned_cols=89 Identities=12% Similarity=0.332 Sum_probs=78.8
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcE
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQ 87 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~ 87 (349)
..+....+.++|||+|||+++|+++|+++|++|+ |++|.|+.++.++++++||||+|.+.++|++|| +++ .|.++.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 3445566789999999999999999999999995 999999999989999999999999999999999 454 889999
Q ss_pred EEEeecCCCCCCC
Q 018875 88 VEIKRTIPKGSGQ 100 (349)
Q Consensus 88 i~v~~~~~~~~~~ 100 (349)
|.|+++.++....
T Consensus 85 l~V~~a~~~~~~~ 97 (103)
T 2dng_A 85 LRVDIAEGRKQDK 97 (103)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEEecCCCCCC
Confidence 9999998765443
No 124
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=127.87 Aligned_cols=86 Identities=23% Similarity=0.434 Sum_probs=77.5
Q ss_pred CCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 9 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
........+.++|||.|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.++++|++|++.++ .+.++
T Consensus 7 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 7 GMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3444556678999999999999999999999999999999999999889999999999999999999998555 88999
Q ss_pred EEEEeecC
Q 018875 87 QVEIKRTI 94 (349)
Q Consensus 87 ~i~v~~~~ 94 (349)
.|.|+++.
T Consensus 87 ~l~v~~ak 94 (94)
T 2e5h_A 87 VIKASIAI 94 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999863
No 125
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=139.78 Aligned_cols=89 Identities=17% Similarity=0.334 Sum_probs=82.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEE--EEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCc----ccC
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE--HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI----DMA 174 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~--v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~----~~~ 174 (349)
......++|||.|||+++|+++|+++|++||.|.. |+|+.++.++++++||||+|++. +|++||+.||+. .|+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34567789999999999999999999999999977 99999999999999999999999 999999999999 999
Q ss_pred CeEEEEEeCCCCCCCC
Q 018875 175 GTQVEIKKAEPKKSSN 190 (349)
Q Consensus 175 g~~i~v~~a~~~~~~~ 190 (349)
++.|+|++++++....
T Consensus 97 gr~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 97 GKTINVEFAKGSKRDM 112 (131)
T ss_dssp GCCCCCEECCCSCCCC
T ss_pred CEEEEEEECCCCCCCC
Confidence 9999999998875543
No 126
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=3.9e-18 Score=131.81 Aligned_cols=82 Identities=18% Similarity=0.308 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|+.|.|+.+. ++++++||||+|+++++|++||++|++..|.++.|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34467899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred eCC
Q 018875 182 KAE 184 (349)
Q Consensus 182 ~a~ 184 (349)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 127
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.8e-18 Score=139.32 Aligned_cols=121 Identities=20% Similarity=0.144 Sum_probs=78.1
Q ss_pred eEEEEEeCCHHHHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCc---eEEEE
Q 018875 61 GFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGK---VLEHQ 137 (349)
Q Consensus 61 G~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~---v~~v~ 137 (349)
+++|.+|..++.+...........+..-. ............+.++|||.|||+++|+++|+++|++||. |+.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~---g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~ 78 (136)
T 2hgl_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQM---GRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVH 78 (136)
T ss_dssp ------------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEE
T ss_pred ccccccccchHHHHhhccCCCcccCCCCC---CCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEE
Confidence 45666666666555554433222111100 0001111233446789999999999999999999999999 88999
Q ss_pred EEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 138 IIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 138 i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
|+.++. ++++|||||+|+++++|++||+ |++..|.++.|+|.++.++
T Consensus 79 i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 79 FIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp EEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 999977 9999999999999999999999 9999999999999998654
No 128
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.5e-18 Score=128.04 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=74.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhC--CCcccCCeEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG--NMIDMAGTQV 178 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l--~~~~~~g~~i 178 (349)
....++++|||.|||+++|+++|+++|++||.|++|.|+++ ++||||+|++.++|++||+.| +...|.+++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34457789999999999999999999999999999998865 679999999999999999976 5678999999
Q ss_pred EEEeCCCCCCCC
Q 018875 179 EIKKAEPKKSSN 190 (349)
Q Consensus 179 ~v~~a~~~~~~~ 190 (349)
.|.+++++....
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999999876543
No 129
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=3.9e-18 Score=131.61 Aligned_cols=90 Identities=23% Similarity=0.462 Sum_probs=79.9
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--cc---C
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--II---N 84 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~---~ 84 (349)
..+..+.+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++|++.++ .+ .
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 344556778999999999999999999999999999999999999889999999999999999999998554 45 7
Q ss_pred CcEEEEeecCCCCCC
Q 018875 85 GKQVEIKRTIPKGSG 99 (349)
Q Consensus 85 g~~i~v~~~~~~~~~ 99 (349)
++.|.|+++.++...
T Consensus 85 g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 85 NRPIQVKPADSESRG 99 (106)
T ss_dssp SSCCEEEECCCCSCC
T ss_pred CceEEEEECCccccc
Confidence 899999999876543
No 130
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=6.5e-18 Score=134.21 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=83.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++++++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+.|++..|.++.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34467899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCC
Q 018875 182 KAEPKKSSNPPP 193 (349)
Q Consensus 182 ~a~~~~~~~~~~ 193 (349)
++.+.....+.+
T Consensus 110 ~a~~~~~~~~~~ 121 (124)
T 2kt5_A 110 LVASQIDLEHHH 121 (124)
T ss_dssp EECCTTCCCCCC
T ss_pred EeCCCCCCCCCc
Confidence 999876655443
No 131
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=127.89 Aligned_cols=85 Identities=25% Similarity=0.548 Sum_probs=77.8
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~ 92 (349)
+.++++|||+|||+++|+++|+++|++|++|++|.|+.++.++++++||||+|.+.++|++|++.+ ..+.++.|.|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 356789999999999999999999999999999999999888999999999999999999999954 489999999999
Q ss_pred cCCCCCC
Q 018875 93 TIPKGSG 99 (349)
Q Consensus 93 ~~~~~~~ 99 (349)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876543
No 132
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=130.42 Aligned_cols=89 Identities=30% Similarity=0.642 Sum_probs=79.6
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
.....+.++|||.|||+++|+++|+++|++|++|++|.|+.++.++++++||||+|.++++|++||+.++ .|.++.|.
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3445678999999999999999999999999999999999998889999999999999999999998544 89999999
Q ss_pred EeecCCCCCCC
Q 018875 90 IKRTIPKGSGQ 100 (349)
Q Consensus 90 v~~~~~~~~~~ 100 (349)
|+++.++....
T Consensus 86 v~~a~~~~~~~ 96 (102)
T 1x5s_A 86 VDQAGKSSDNR 96 (102)
T ss_dssp EEEEECCCCCC
T ss_pred EEECCCCCCCC
Confidence 99988765543
No 133
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=131.01 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC--cccCCeEEE
Q 018875 103 DFKTKKIFVGGIPS-SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM--IDMAGTQVE 179 (349)
Q Consensus 103 ~~~~~~l~V~nL~~-~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~--~~~~g~~i~ 179 (349)
..+.++|||.|||+ ++|+++|+++|++||.|.+|.|+++ ++||||+|+++++|++||+.|+. ..|.+++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 44788999999999 9999999999999999999999875 46999999999999999998874 469999999
Q ss_pred EEeCCCCCCC
Q 018875 180 IKKAEPKKSS 189 (349)
Q Consensus 180 v~~a~~~~~~ 189 (349)
|.++++....
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999976544
No 134
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=131.86 Aligned_cols=82 Identities=24% Similarity=0.421 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
.+.+.++|||.|||+++|+++|+++|++||+|..|.|+.++. ++++|||||+|+++++|++||+ ++++.|.++.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 344678999999999999999999999999999999999977 9999999999999999999999 89999999999999
Q ss_pred eCCC
Q 018875 182 KAEP 185 (349)
Q Consensus 182 ~a~~ 185 (349)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8664
No 135
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.4e-18 Score=129.06 Aligned_cols=86 Identities=31% Similarity=0.517 Sum_probs=78.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
.....+.++|||.|||+++|+++|+++|++| ..|.++.++.++++++||||+|+++++|++||+.|++..|.++.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3455678999999999999999999999987 3678888888999999999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 018875 180 IKKAEPKKS 188 (349)
Q Consensus 180 v~~a~~~~~ 188 (349)
|++++++..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999998654
No 136
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-18 Score=130.28 Aligned_cols=89 Identities=16% Similarity=0.313 Sum_probs=78.7
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT-GQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~-g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
..+....+.++|||+|||+++|+++|+++|++|+ |++|.|+.++.+ +++++||||+|.++++|++|| .++ .|.++
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 3444556779999999999999999999999999 999999999877 899999999999999999999 544 89999
Q ss_pred EEEEeecCCCCCCC
Q 018875 87 QVEIKRTIPKGSGQ 100 (349)
Q Consensus 87 ~i~v~~~~~~~~~~ 100 (349)
.|.|+++.++....
T Consensus 85 ~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 85 RIRVDVADQAQDKD 98 (104)
T ss_dssp ECEEEECCCCCCCC
T ss_pred EEEEEEccCCCCCC
Confidence 99999998765543
No 137
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=9.7e-19 Score=132.20 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
..++|||.|||+++|+++|+++|++||.|+.+.++.++.++++++||||+|+++++|++||++||+..|.+++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 56899999999999999999999999999999999998999999999999999999999999999999999999999876
Q ss_pred C
Q 018875 185 P 185 (349)
Q Consensus 185 ~ 185 (349)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 138
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-18 Score=133.65 Aligned_cols=85 Identities=27% Similarity=0.572 Sum_probs=80.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
.+.++|||.|||+++|+++|+++|++||.|..|.|+.++.++++++||||+|.+.++|++||+.|++..|.++.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 018875 184 EPKKS 188 (349)
Q Consensus 184 ~~~~~ 188 (349)
.++..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87653
No 139
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=1.1e-18 Score=136.68 Aligned_cols=103 Identities=19% Similarity=0.302 Sum_probs=90.0
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
+.+.++|||+|||+++|+++|+++|++||+|.+|.|+.+. .+++||||+|.+.++|++|++.++ .+.++.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999754 458999999999999999999544 89999999999
Q ss_pred cCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCc
Q 018875 93 TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGK 132 (349)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~ 132 (349)
+.+.... .+++...++++|+++|++||.
T Consensus 82 a~~~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 8764332 567788899999999999974
No 140
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-19 Score=139.47 Aligned_cols=83 Identities=23% Similarity=0.432 Sum_probs=78.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
..++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++|| .||+..|.++.|+|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 5579999999999999999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred CCCC
Q 018875 185 PKKS 188 (349)
Q Consensus 185 ~~~~ 188 (349)
++..
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 7543
No 141
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=127.47 Aligned_cols=91 Identities=21% Similarity=0.524 Sum_probs=79.2
Q ss_pred CCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 9 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
........+.++|||+|||+++|+++|+++|++||+|++|.|+.+.. .+++||||+|.+.++|++||+.++ .|.++
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34455667789999999999999999999999999999999999864 388999999999999999998544 89999
Q ss_pred EEEEeecCCCCCCCC
Q 018875 87 QVEIKRTIPKGSGQS 101 (349)
Q Consensus 87 ~i~v~~~~~~~~~~~ 101 (349)
.|.|+++.++.....
T Consensus 84 ~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 84 KIEVNNATARVMTNS 98 (103)
T ss_dssp ECEEEECCSSCCCCC
T ss_pred EEEEEEcccCCCCCC
Confidence 999999987755443
No 142
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=127.63 Aligned_cols=89 Identities=16% Similarity=0.331 Sum_probs=77.7
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcE
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQ 87 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~ 87 (349)
....+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+ +++||||+|.+.++|++|++.++ .|.++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 7 GMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 34556677899999999999999999999999999999999998643 68999999999999999999554 889999
Q ss_pred EEEeecCCCCCCC
Q 018875 88 VEIKRTIPKGSGQ 100 (349)
Q Consensus 88 i~v~~~~~~~~~~ 100 (349)
|.|+++.++....
T Consensus 85 l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 85 VKVNWATTPSSQK 97 (103)
T ss_dssp EEEEECCCTTCCC
T ss_pred EEEEECCCCcccc
Confidence 9999998765433
No 143
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=133.01 Aligned_cols=84 Identities=18% Similarity=0.311 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC--CcccCCeEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN--MIDMAGTQVE 179 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~--~~~~~g~~i~ 179 (349)
...+.++|||.|||+++|+++|+++|++||.|++|.|+++ ++||||+|++.++|++||+.|+ ...|.+++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3446789999999999999999999999999999999875 6799999999999999999887 4689999999
Q ss_pred EEeCCCCCCCCC
Q 018875 180 IKKAEPKKSSNP 191 (349)
Q Consensus 180 v~~a~~~~~~~~ 191 (349)
|.+++++.....
T Consensus 101 V~~a~~k~~~~~ 112 (119)
T 2ad9_A 101 IQFSNHKELKTD 112 (119)
T ss_dssp EEECSSSSCCCC
T ss_pred EEEccCCCCCcc
Confidence 999998765543
No 144
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=140.33 Aligned_cols=82 Identities=20% Similarity=0.376 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYG--KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G--~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..++|||.|||+++|+++|+++|++|| .|..|.|+.++.+++++|||||+|++.++|++||+.||+..|.++.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 018875 183 AEPK 186 (349)
Q Consensus 183 a~~~ 186 (349)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 145
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=126.25 Aligned_cols=82 Identities=23% Similarity=0.464 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|+.|.|+++ ||||+|+++++|++||+.||+..|.++.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34457889999999999999999999999999999999855 9999999999999999999999999999999
Q ss_pred EeCCCCCCCC
Q 018875 181 KKAEPKKSSN 190 (349)
Q Consensus 181 ~~a~~~~~~~ 190 (349)
++++++....
T Consensus 77 ~~a~~~~~~~ 86 (92)
T 2dgt_A 77 QLSTSRLRTA 86 (92)
T ss_dssp EESSCCCSCC
T ss_pred EEccCCCCCC
Confidence 9999875543
No 146
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=128.68 Aligned_cols=84 Identities=26% Similarity=0.346 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEE-EEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE-HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~-v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
..+..+|||.|||+++|+++|+++|++||.|.. |.|+.+ .++++++||||+|+++++|++||++ ++..|.++.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 346789999999999999999999999999998 888888 8899999999999999999999998 9999999999999
Q ss_pred eCCCCCC
Q 018875 182 KAEPKKS 188 (349)
Q Consensus 182 ~a~~~~~ 188 (349)
++.++..
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 9876543
No 147
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=135.48 Aligned_cols=90 Identities=20% Similarity=0.354 Sum_probs=80.8
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
...++...++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.++ .|.++.|
T Consensus 35 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp SSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34455678999999999999999999999999999999999999889999999999999999999999655 8999999
Q ss_pred EEeecCCCCCCC
Q 018875 89 EIKRTIPKGSGQ 100 (349)
Q Consensus 89 ~v~~~~~~~~~~ 100 (349)
.|+++.+.....
T Consensus 115 ~v~~a~~~~~~~ 126 (139)
T 1u6f_A 115 KVALAASGHQRP 126 (139)
T ss_dssp EEEESSCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999998765543
No 148
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=125.69 Aligned_cols=81 Identities=26% Similarity=0.547 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~ 93 (349)
.+.++|||+|||.++|+++|+++|++||+|.++.|+.++.++++++||||+|.+.++|++|++.+ ..+.++.|.|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999889999999999999999999999954 4899999999998
Q ss_pred CCC
Q 018875 94 IPK 96 (349)
Q Consensus 94 ~~~ 96 (349)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 149
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.5e-18 Score=129.06 Aligned_cols=88 Identities=18% Similarity=0.346 Sum_probs=77.0
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCCcE
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITD-SVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQ 87 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~-~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~~ 87 (349)
....+..+.++|||+|||+++|+++|+++|++|++|.+ |.|+.+ .+++++|||||+|.++++|++||+. ...+.++.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 7 GNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp CCCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 33455567899999999999999999999999999987 888888 6899999999999999999999994 44899999
Q ss_pred EEEeecCCCCC
Q 018875 88 VEIKRTIPKGS 98 (349)
Q Consensus 88 i~v~~~~~~~~ 98 (349)
|.|.++..+..
T Consensus 86 i~v~~~~~~~~ 96 (104)
T 1wg5_A 86 IEIFKSSRAEV 96 (104)
T ss_dssp CEEEEECTTTS
T ss_pred EEEEECCHHHH
Confidence 99998876543
No 150
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=128.30 Aligned_cols=86 Identities=26% Similarity=0.469 Sum_probs=78.2
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDS-VIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~-~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
+.+.++|||+|||+++|+++|+++|++||+|+++ .|+.++.++++++||||+|.++++|++|++.++ .+.++.|.|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3567899999999999999999999999999999 999998899999999999999999999999555 8899999999
Q ss_pred ecCCCCCCC
Q 018875 92 RTIPKGSGQ 100 (349)
Q Consensus 92 ~~~~~~~~~ 100 (349)
++.++....
T Consensus 82 ~a~~~~~~~ 90 (96)
T 1x5t_A 82 YAFKKDSKG 90 (96)
T ss_dssp ESCCCCCCC
T ss_pred EecccCCCC
Confidence 998765543
No 151
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=125.27 Aligned_cols=79 Identities=25% Similarity=0.616 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||.|||+++|+++|+++|++||.|+.|.|+ ++||||+|+++++|++||+.|++..|.++.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4477899999999999999999999999999999998 45999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 018875 183 AEPKKSS 189 (349)
Q Consensus 183 a~~~~~~ 189 (349)
++++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9987654
No 152
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-18 Score=135.06 Aligned_cols=89 Identities=21% Similarity=0.304 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|..|.+..+..++++++||||+|++.++|++||+.|++..|.++.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34467899999999999999999999999998443332222377889999999999999999999999999999999999
Q ss_pred eCCCCCCCC
Q 018875 182 KAEPKKSSN 190 (349)
Q Consensus 182 ~a~~~~~~~ 190 (349)
+++++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999876544
No 153
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.7e-18 Score=129.22 Aligned_cols=87 Identities=17% Similarity=0.241 Sum_probs=77.7
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcE
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQ 87 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~ 87 (349)
.........++|||+|||+++|+++|+++|++|++|+++.++.++.++++++||||+|.++++|++||+.++ .|.++.
T Consensus 7 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 7 GASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CCCCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 334455677899999999999999999999999999999999988899999999999999999999998655 899999
Q ss_pred EEEeecCCC
Q 018875 88 VEIKRTIPK 96 (349)
Q Consensus 88 i~v~~~~~~ 96 (349)
|.|+++...
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999998754
No 154
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=5.9e-18 Score=135.40 Aligned_cols=88 Identities=23% Similarity=0.386 Sum_probs=79.5
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcE
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQ 87 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~ 87 (349)
....++.+.++|||.|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.++ .|.++.
T Consensus 38 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 38 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344556778999999999999999999999999999999999998889999999999999999999999544 899999
Q ss_pred EEEeecCCCC
Q 018875 88 VEIKRTIPKG 97 (349)
Q Consensus 88 i~v~~~~~~~ 97 (349)
|.|+++.++.
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999987653
No 155
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=6.8e-18 Score=127.72 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcc--cCCeEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMID--MAGTQVE 179 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~--~~g~~i~ 179 (349)
...++++|||+|||+++|+++|+++|++||.|++|.|++. |+||||+|++.++|++|++.|+... |.+++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3447889999999999999999999999999999999853 6799999999999999999988765 8899999
Q ss_pred EEeCCCCC
Q 018875 180 IKKAEPKK 187 (349)
Q Consensus 180 v~~a~~~~ 187 (349)
|++++++.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998764
No 156
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1.1e-17 Score=122.98 Aligned_cols=79 Identities=20% Similarity=0.439 Sum_probs=73.8
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeecCC
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRTIP 95 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~~~ 95 (349)
+.+|||+|||+++|+++|+++|++||+|.++.|+.++.++++++||||+|.++++|++|++.+ ..+.++.|.|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999999999889999999999999999999999954 489999999999986
Q ss_pred C
Q 018875 96 K 96 (349)
Q Consensus 96 ~ 96 (349)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 157
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=4.7e-18 Score=132.08 Aligned_cols=90 Identities=19% Similarity=0.358 Sum_probs=79.4
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCC
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IING 85 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g 85 (349)
..+.+....+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++|++.++ .|.+
T Consensus 16 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 16 LEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp --CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34445556778899999999999999999999999999999999998899999999999999999999999544 8899
Q ss_pred cEEEEeecCCCC
Q 018875 86 KQVEIKRTIPKG 97 (349)
Q Consensus 86 ~~i~v~~~~~~~ 97 (349)
+.|.|+++.++.
T Consensus 96 ~~l~V~~a~~~~ 107 (110)
T 1oo0_B 96 QTIQVDWCFVKG 107 (110)
T ss_dssp EECEEEESEESS
T ss_pred cEEEEEEcccCC
Confidence 999999987654
No 158
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-18 Score=129.07 Aligned_cols=81 Identities=20% Similarity=0.441 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
.+.++|||.|||+++++++|+++|++||.|..|.|+.++.++++++||||+|+++++|++||+.||+..|.++.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred C
Q 018875 184 E 184 (349)
Q Consensus 184 ~ 184 (349)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.1e-18 Score=127.60 Aligned_cols=85 Identities=25% Similarity=0.434 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRY---TGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~---~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
.+.++|||+|||+++|+++|+++|++||+|++|.|+.++. ++++++||||+|.+.++|++|++.++ .|.++.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5678999999999999999999999999999999999876 55899999999999999999999554 899999999
Q ss_pred eecCCCCCCC
Q 018875 91 KRTIPKGSGQ 100 (349)
Q Consensus 91 ~~~~~~~~~~ 100 (349)
+++.++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998765443
No 160
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=129.19 Aligned_cols=87 Identities=24% Similarity=0.504 Sum_probs=78.6
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQV 88 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i 88 (349)
.+..+.+.++|||+|||.++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++|++.+ ..|.++.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445667899999999999999999999999999999999999889999999999999999999999844 48999999
Q ss_pred EEeecCCCC
Q 018875 89 EIKRTIPKG 97 (349)
Q Consensus 89 ~v~~~~~~~ 97 (349)
.|+++.++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999987653
No 161
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=127.77 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC--cccCCeEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM--IDMAGTQVE 179 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~--~~~~g~~i~ 179 (349)
...++++|||.|||+++|+++|+++|++||.|++|.|+++ ++||||+|++.++|++||+.|+. ..|.+++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3446789999999999999999999999999999998864 67999999999999999998754 569999999
Q ss_pred EEeCCCCCCCC
Q 018875 180 IKKAEPKKSSN 190 (349)
Q Consensus 180 v~~a~~~~~~~ 190 (349)
|.+++.+....
T Consensus 85 V~~a~~~~~~~ 95 (104)
T 1wex_A 85 FNYSTSKRITR 95 (104)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCccccC
Confidence 99998876543
No 162
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=1.2e-17 Score=132.73 Aligned_cols=83 Identities=16% Similarity=0.387 Sum_probs=78.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++|| +|++..|.++.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4679999999999999999999999999999999999999999999999999999999999 899999999999999998
Q ss_pred CCCC
Q 018875 185 PKKS 188 (349)
Q Consensus 185 ~~~~ 188 (349)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 163
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=127.53 Aligned_cols=85 Identities=22% Similarity=0.425 Sum_probs=73.9
Q ss_pred CCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCc
Q 018875 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGK 86 (349)
Q Consensus 9 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~ 86 (349)
...+..+.+.++|||.|||+++|+++|+++|++||+|++|.|+.++. +++++||||+|.++++|++|++.+ ..+.++
T Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 7 GMFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp -----CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 34455667789999999999999999999999999999999999984 899999999999999999999954 489999
Q ss_pred EEEEeecC
Q 018875 87 QVEIKRTI 94 (349)
Q Consensus 87 ~i~v~~~~ 94 (349)
.|.|+++.
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 99999875
No 164
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=4.7e-18 Score=135.41 Aligned_cols=93 Identities=19% Similarity=0.413 Sum_probs=81.0
Q ss_pred CCCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccC
Q 018875 7 SDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIIN 84 (349)
Q Consensus 7 ~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~ 84 (349)
.+.+.+....+.++|||.|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.+ ..|.
T Consensus 11 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 11 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp ---CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 34455566677899999999999999999999999999999999999889999999999999999999999854 4899
Q ss_pred CcEEEEeecCCCCCC
Q 018875 85 GKQVEIKRTIPKGSG 99 (349)
Q Consensus 85 g~~i~v~~~~~~~~~ 99 (349)
++.|.|+++.++...
T Consensus 91 g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 91 GQPISVDWCFVRGPP 105 (126)
T ss_dssp SSBCEEEESEESSSC
T ss_pred CeEEEEEEecCCCCC
Confidence 999999998765443
No 165
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=130.54 Aligned_cols=89 Identities=20% Similarity=0.363 Sum_probs=79.9
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDIT--------DSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-- 80 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~--------~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~-- 80 (349)
.+.+..+.++|||+|||+++|+++|+++|++|++|+ .|.|+.++.++++++||||+|.+.++|++||+.+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 345667889999999999999999999999999999 6999999889999999999999999999999954
Q ss_pred CccCCcEEEEeecCCCCCC
Q 018875 81 HIINGKQVEIKRTIPKGSG 99 (349)
Q Consensus 81 ~~~~g~~i~v~~~~~~~~~ 99 (349)
..|.++.|.|+++.++...
T Consensus 88 ~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CEETTEECEEECSSCCCCS
T ss_pred CccCCCEEEEEECCCCCCC
Confidence 4899999999999876554
No 166
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.5e-18 Score=128.53 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=74.9
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v 90 (349)
...+...++|||+|||+++|+++|+++|++|+.| +|.|+.++ +++++|||||+|+++++|++||+ +.+.|.++.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 4456677899999999999999999999999955 99999998 89999999999999999999997 344899999999
Q ss_pred eecCCCCC
Q 018875 91 KRTIPKGS 98 (349)
Q Consensus 91 ~~~~~~~~ 98 (349)
.++.+...
T Consensus 87 ~~~~~~~~ 94 (102)
T 1wez_A 87 FLNSTAGT 94 (102)
T ss_dssp EEECCCCC
T ss_pred EECCCCCC
Confidence 98876543
No 167
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=126.95 Aligned_cols=87 Identities=21% Similarity=0.365 Sum_probs=78.1
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITD--------SVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--------~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
+.+........++|||+|||+++|+++|+++|++||.|.+ +.|+.++.+++++|||||+|.+.++|++|++.
T Consensus 3 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 3 HHHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp SSCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 3445566778899999999999999999999999999999 99999988999999999999999999999985
Q ss_pred c--CccCCcEEEEeecC
Q 018875 80 T--HIINGKQVEIKRTI 94 (349)
Q Consensus 80 ~--~~~~g~~i~v~~~~ 94 (349)
+ ..+.++.|.|+++.
T Consensus 83 l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 83 FDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HTTCBSSSSBCEEEECC
T ss_pred hCCCEeCCcEEEEEecC
Confidence 4 48999999998863
No 168
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=1.4e-17 Score=137.74 Aligned_cols=86 Identities=16% Similarity=0.240 Sum_probs=78.3
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
....+.++|||.|||+++|+++|+++|++|++|++|.|+.++.++++++||||+|.++++|++||+.++ .|.++.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344578999999999999999999999999999999999999899999999999999999999999554 899999999
Q ss_pred eecCCCCC
Q 018875 91 KRTIPKGS 98 (349)
Q Consensus 91 ~~~~~~~~ 98 (349)
+++.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99986533
No 169
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6e-18 Score=132.78 Aligned_cols=85 Identities=34% Similarity=0.650 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCCcEEEEeecC
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTI 94 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~~i~v~~~~ 94 (349)
.+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+. .+.|.++.|.|+++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 3458999999999999999999999999999999999988899999999999999999999995 348999999999998
Q ss_pred CCCCCC
Q 018875 95 PKGSGQ 100 (349)
Q Consensus 95 ~~~~~~ 100 (349)
++....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 775543
No 170
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=130.13 Aligned_cols=84 Identities=25% Similarity=0.490 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc--------
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM-------- 173 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~-------- 173 (349)
.+.+.++|||.|||+++|+++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44577899999999999999999999999999999999997 899999999999999999999999999999
Q ss_pred CCeEEEEEeCCCC
Q 018875 174 AGTQVEIKKAEPK 186 (349)
Q Consensus 174 ~g~~i~v~~a~~~ 186 (349)
.+++|.|.++.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999854
No 171
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=3.3e-18 Score=130.68 Aligned_cols=84 Identities=20% Similarity=0.434 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecC-CCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDH-ETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~-~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
.....++|||.|||+++|+++|+++|++|| |..|.|+.++ .++++++||||+|.+.++|++|| .|++..|.++.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345778999999999999999999999999 9999999998 68999999999999999999999 89999999999999
Q ss_pred EeCCCCC
Q 018875 181 KKAEPKK 187 (349)
Q Consensus 181 ~~a~~~~ 187 (349)
++++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998753
No 172
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=7.1e-18 Score=124.61 Aligned_cols=81 Identities=22% Similarity=0.415 Sum_probs=74.3
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~ 91 (349)
.+.+.++|||+|||+++|+++|+++|++||+|.++.|+.++.++++++||||+|.++++|++|++.+ ..+.++.|.|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3567899999999999999999999999999999999999889999999999999999999999844 48999999998
Q ss_pred ecC
Q 018875 92 RTI 94 (349)
Q Consensus 92 ~~~ 94 (349)
++.
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 863
No 173
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-17 Score=127.67 Aligned_cols=87 Identities=16% Similarity=0.308 Sum_probs=77.2
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
........++|||+|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|.+.++|++||+.++ .|.++.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 34455678999999999999999999999999999999999998 68999999999999999999999544 8999999
Q ss_pred EEeecCCCCC
Q 018875 89 EIKRTIPKGS 98 (349)
Q Consensus 89 ~v~~~~~~~~ 98 (349)
.|+++.....
T Consensus 87 ~v~~a~~~~~ 96 (114)
T 2do0_A 87 HVKMDERALP 96 (114)
T ss_dssp EEEECSCCCC
T ss_pred EEEEcccCCC
Confidence 9999875433
No 174
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-18 Score=124.43 Aligned_cols=76 Identities=34% Similarity=0.683 Sum_probs=73.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
++|||.|||+++|+++|+++|++||+|..|.|+.++.++++++||||+|+++++|++|++.++ ..+.+++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999999 9999999999986
No 175
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=7.4e-18 Score=123.19 Aligned_cols=74 Identities=9% Similarity=0.186 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
.+..|+|+||++.+||++|+++|.+||+|.++.|+. ++|||||+|.++++|++|++.||++.+.+++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999975 58999999999999999999999999999999999984
No 176
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=125.96 Aligned_cols=80 Identities=16% Similarity=0.353 Sum_probs=73.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC--CeEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA--GTQVE 179 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~--g~~i~ 179 (349)
...+.++|||.|||+++|+++|+++|++||.|+.|.|+.+ ++||||+|+++++|++||+.||+..|. ++.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3446789999999999999999999999999999999764 679999999999999999999999999 99999
Q ss_pred EEeCCCCC
Q 018875 180 IKKAEPKK 187 (349)
Q Consensus 180 v~~a~~~~ 187 (349)
|++++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99999864
No 177
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=124.32 Aligned_cols=79 Identities=23% Similarity=0.503 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|..|.|+++ ||||+|++.++|++||+.|++..|.++.|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457889999999999999999999999999999999855 99999999999999999999999999999999
Q ss_pred eCCCCCC
Q 018875 182 KAEPKKS 188 (349)
Q Consensus 182 ~a~~~~~ 188 (349)
+++++..
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9988754
No 178
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=127.18 Aligned_cols=84 Identities=19% Similarity=0.445 Sum_probs=76.0
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcE---
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDIT-DSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQ--- 87 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~-~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~--- 87 (349)
.....++|||+|||+++|+++|+++|++||+|+ +|.|+.++.++++++||||+|.+.++|++|++.++ .+.++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 445678999999999999999999999999999 99999999899999999999999999999999655 788888
Q ss_pred -EEEeecCCCC
Q 018875 88 -VEIKRTIPKG 97 (349)
Q Consensus 88 -i~v~~~~~~~ 97 (349)
|.|.++.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 8898887643
No 179
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=3e-18 Score=123.58 Aligned_cols=75 Identities=40% Similarity=0.760 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
+|||.|||+++|+++|+++|++||+|..|.|+.++.++++++||||+|+++++|++|++ |++..|.++.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 8999999999999875
No 180
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=6.5e-18 Score=129.19 Aligned_cols=93 Identities=19% Similarity=0.450 Sum_probs=79.5
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeecCCC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRTIPK 96 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~~~~ 96 (349)
++|||+|||+++|+++|+++|++||+|++|.|+.+ +++||||+|.+.++|++|++.+ ..+.++.|.|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 6689999999999999999954 4899999999999876
Q ss_pred CCCCC------CCCCCCeEEEcCCCC
Q 018875 97 GSGQS------KDFKTKKIFVGGIPS 116 (349)
Q Consensus 97 ~~~~~------~~~~~~~l~V~nL~~ 116 (349)
..... ......+|||++|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCCC
Confidence 54322 122367899999973
No 181
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.7e-18 Score=128.71 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=72.7
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc----CccCCcEEE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT----HIINGKQVE 89 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~----~~~~g~~i~ 89 (349)
.+.+.++|||+|||+++|+++|+++|++||+|++|+|+++ |+||||+|+++++|++|++.+ ..|.+++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567899999999999999999999999999999999986 489999999999999999943 368999999
Q ss_pred EeecCCCCCCCC
Q 018875 90 IKRTIPKGSGQS 101 (349)
Q Consensus 90 v~~~~~~~~~~~ 101 (349)
|.++.++.....
T Consensus 86 V~~A~~~~~~~~ 97 (105)
T 1sjq_A 86 IQFSNHKELKTD 97 (105)
T ss_dssp BCCCSSSSCCCT
T ss_pred EEEcCCCCCCcc
Confidence 999987655543
No 182
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=127.35 Aligned_cols=87 Identities=24% Similarity=0.512 Sum_probs=78.1
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhc-CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--c-cCCcEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGK-YGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--I-INGKQV 88 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~-~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~-~~g~~i 88 (349)
.+..+.++|||+|||+++|+++|+++|++ |++|++|.|+.++ ++++++||||+|.+.++|++||+.++ . +.++.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34567789999999999999999999999 9999999999998 99999999999999999999999665 6 899999
Q ss_pred EEeecCCCCCCC
Q 018875 89 EIKRTIPKGSGQ 100 (349)
Q Consensus 89 ~v~~~~~~~~~~ 100 (349)
.|+++.++....
T Consensus 83 ~v~~a~~~~~~~ 94 (104)
T 2dhg_A 83 RLSVAIPKASRV 94 (104)
T ss_dssp CCCBCCCCCSCC
T ss_pred EEEEccCCCcCC
Confidence 999987665443
No 183
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.3e-17 Score=131.22 Aligned_cols=80 Identities=20% Similarity=0.479 Sum_probs=74.0
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++|++.++ .|.++.|.|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999654 8899999998
Q ss_pred ec
Q 018875 92 RT 93 (349)
Q Consensus 92 ~~ 93 (349)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 184
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=127.69 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=71.5
Q ss_pred CCCCCCCCceEEEcCCCc-CCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC----ccCC
Q 018875 11 HTGDGASPGKIFIGGLPK-DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH----IING 85 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~----~~~g 85 (349)
......++++|||+|||+ ++|+++|+++|++||+|++|+|++++ +||||+|+++++|++|++.++ .|.+
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 8 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 344456789999999999 99999999999999999999999764 799999999999999999543 4899
Q ss_pred cEEEEeecCCCCC
Q 018875 86 KQVEIKRTIPKGS 98 (349)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (349)
++|.|.++.....
T Consensus 82 r~l~V~~a~~~~~ 94 (102)
T 1x4d_A 82 KPVRVHLSQKYKR 94 (102)
T ss_dssp EECEEEEECCCTT
T ss_pred cEEEEEECCCCCC
Confidence 9999999986443
No 185
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.7e-18 Score=128.65 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEee
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKR 92 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~ 92 (349)
++.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++. ++++|||||+|.++++|++||+ +.+.+.++.|.|++
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 455678999999999999999999999999999999999986 9999999999999999999999 34489999999998
Q ss_pred cCC
Q 018875 93 TIP 95 (349)
Q Consensus 93 ~~~ 95 (349)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 654
No 186
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=4.2e-18 Score=127.45 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=68.9
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYG--DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTI 94 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G--~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~ 94 (349)
.+|||+|||+++|+++|+++|++|| +|.++.|+.++.+++++|||||+|.+.++|++|++.++ .++++.|.|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999899999999999999999999998554 8999999999988
Q ss_pred CCCC
Q 018875 95 PKGS 98 (349)
Q Consensus 95 ~~~~ 98 (349)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 187
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.1e-18 Score=132.84 Aligned_cols=84 Identities=12% Similarity=0.159 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCce-EEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKV-LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v-~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
...+.++|||.|||+++|+++|+++|++|+.| ..|.|+.++ ++++++||||+|+++++|++||+. ++..|.++.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 889999997 899999999999999999999998 999999999999
Q ss_pred EeCCCCC
Q 018875 181 KKAEPKK 187 (349)
Q Consensus 181 ~~a~~~~ 187 (349)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998764
No 188
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=128.00 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCC------CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCC
Q 018875 102 KDFKTKKIFVGGIPSSV------SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~------t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g 175 (349)
.....++|||.|||+.+ |+++|+++|++||.|..|.|+ +.++++++||||+|.+.++|++||+.||+..|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999988 4678999999999999999999999999999999
Q ss_pred e-EEEEEeCCCCC
Q 018875 176 T-QVEIKKAEPKK 187 (349)
Q Consensus 176 ~-~i~v~~a~~~~ 187 (349)
+ +|+|.++....
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 8 99999998654
No 189
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-17 Score=122.23 Aligned_cols=82 Identities=15% Similarity=0.318 Sum_probs=75.0
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
......++|||+|||+++|+++|+++|++| .|.+|.|+.+ .++++++||||+|.+.++|++||+ ++ .|.++.|.|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 345677899999999999999999999999 9999999999 589999999999999999999999 65 899999999
Q ss_pred eecCCCC
Q 018875 91 KRTIPKG 97 (349)
Q Consensus 91 ~~~~~~~ 97 (349)
.++.++.
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9987653
No 190
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=1.3e-17 Score=129.64 Aligned_cols=96 Identities=21% Similarity=0.442 Sum_probs=79.7
Q ss_pred CCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHH
Q 018875 84 NGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSS-VSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD 162 (349)
Q Consensus 84 ~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~-~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~ 162 (349)
.+.+|.++.+...... ......++|||.|||++ +|+++|+++|++||.|+.|.| +++||||+|+++++|+
T Consensus 6 ~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 3455555555443222 23345689999999999 999999999999999999998 4679999999999999
Q ss_pred HHHHhCCCcccCCeEEEEEeCCCCCC
Q 018875 163 EMLSKGNMIDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 163 ~Ai~~l~~~~~~g~~i~v~~a~~~~~ 188 (349)
+||++|++..|.++.|+|+++++...
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHcCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999986543
No 191
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.4e-18 Score=129.94 Aligned_cols=83 Identities=36% Similarity=0.700 Sum_probs=74.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.+ |++|++.||+..+.++.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999887
Q ss_pred CCCC
Q 018875 187 KSSN 190 (349)
Q Consensus 187 ~~~~ 190 (349)
....
T Consensus 81 ~~~~ 84 (90)
T 2ki2_A 81 KSLE 84 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 5543
No 192
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=127.80 Aligned_cols=82 Identities=21% Similarity=0.443 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
....++|||.|||+++|+++|+++|++||.|..|.|+.+ ++||||+|++.++|++||+.|++..|.++.|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 346789999999999999999999999999999999876 67999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 018875 183 AEPKKSSN 190 (349)
Q Consensus 183 a~~~~~~~ 190 (349)
++++....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 99876543
No 193
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.2e-18 Score=130.27 Aligned_cols=85 Identities=27% Similarity=0.549 Sum_probs=78.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
.....+.++|||.|||+++|+++|+++|++||.|+.|.|+.++. .+++||||+|++.++|++|++.|++..|.++.|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34555788999999999999999999999999999999998853 4899999999999999999999999999999999
Q ss_pred EEeCCCC
Q 018875 180 IKKAEPK 186 (349)
Q Consensus 180 v~~a~~~ 186 (349)
|++++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999875
No 194
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=128.90 Aligned_cols=85 Identities=33% Similarity=0.690 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|.+.++|++|++.++ .|.++.|.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34667899999999999999999999999999999999998 89999999999999999999999554 8999999999
Q ss_pred ecCCCCCC
Q 018875 92 RTIPKGSG 99 (349)
Q Consensus 92 ~~~~~~~~ 99 (349)
++.+....
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 98866543
No 195
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.2e-17 Score=123.66 Aligned_cols=79 Identities=25% Similarity=0.341 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcc--CceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKY--GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~--G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
...+.++|||.|||+++|+++|+++|++| +.|..|.++ ++||||+|.+.++|++||+.||+..|.++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34467899999999999999999999999 999999875 44999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 018875 180 IKKAEPKKS 188 (349)
Q Consensus 180 v~~a~~~~~ 188 (349)
|.+++++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999988654
No 196
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=129.58 Aligned_cols=79 Identities=30% Similarity=0.435 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
+..+|||.|||+++|+++|+++|++| .|..|.|+.++. ++++|||||+|+++++|++|| +||+..|.++.|+|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34689999999999999999999999 899999999865 999999999999999999999 689999999999999887
Q ss_pred CC
Q 018875 185 PK 186 (349)
Q Consensus 185 ~~ 186 (349)
++
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 197
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=1e-17 Score=131.35 Aligned_cols=76 Identities=25% Similarity=0.407 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeE-----EE
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ-----VE 179 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~-----i~ 179 (349)
...+|||.|||+++|+++|+++|++||+|+.|.|+.+ +||||+|+++++|++||++||+.+|+++. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 5689999999999999999999999999999999865 69999999999999999999999999998 77
Q ss_pred EEeCCCCC
Q 018875 180 IKKAEPKK 187 (349)
Q Consensus 180 v~~a~~~~ 187 (349)
|+.+.++.
T Consensus 88 v~~~~~~~ 95 (115)
T 3beg_B 88 VKVDGPRS 95 (115)
T ss_dssp EEECC---
T ss_pred eccCCCCC
Confidence 77776643
No 198
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=5.5e-18 Score=128.00 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=72.1
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v 90 (349)
......++|||+|||+++|+++|+++|++|++|+++.++.++.++++++||||+|.++++|++||+.+ ..|.++.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 34445699999999999999999999999999999999999889999999999999999999999854 4899999999
Q ss_pred eecC
Q 018875 91 KRTI 94 (349)
Q Consensus 91 ~~~~ 94 (349)
+++.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9875
No 199
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.4e-17 Score=124.30 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=72.5
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc----CccCCcE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT----HIINGKQ 87 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~----~~~~g~~ 87 (349)
.....++++|||+|||+++|+++|+++|++||.|++|.|+++ ++||||+|++.++|++|++.+ ..+.+++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 445567889999999999999999999999999999998875 489999999999999999843 3699999
Q ss_pred EEEeecCCCCCCC
Q 018875 88 VEIKRTIPKGSGQ 100 (349)
Q Consensus 88 i~v~~~~~~~~~~ 100 (349)
|.|.++..+....
T Consensus 83 l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 83 IYIQYSNHKELKT 95 (101)
T ss_dssp CEEEECSCSSCCC
T ss_pred EEEEEcCcccCcC
Confidence 9999998765544
No 200
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=129.41 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=71.6
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEe
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIK 91 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~ 91 (349)
....+.++|||+|||+++|+++|+++|++| .|++|.|+.++ +++++|||||+|.++++|++||+ +.+.|.++.|.|.
T Consensus 11 ~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 11 PINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVS 88 (109)
T ss_dssp CCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 344456899999999999999999999999 99999999997 49999999999999999999996 3448999999998
Q ss_pred ecCC
Q 018875 92 RTIP 95 (349)
Q Consensus 92 ~~~~ 95 (349)
.+..
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 7753
No 201
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-17 Score=126.68 Aligned_cols=87 Identities=20% Similarity=0.352 Sum_probs=75.2
Q ss_pred CCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 9 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
.....+..+.++|||+|||+++|+++|+++|++|++|++|.|+.+ .++++||||+|.+.++|++||+.++ .|+++
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 334455667899999999999999999999999999999999664 4588999999999999999998544 89999
Q ss_pred EEEEeecCCCCC
Q 018875 87 QVEIKRTIPKGS 98 (349)
Q Consensus 87 ~i~v~~~~~~~~ 98 (349)
.|.|+++.+...
T Consensus 90 ~l~V~~a~~~~~ 101 (109)
T 1x4a_A 90 RLRVEFPRSGRG 101 (109)
T ss_dssp ECEEECCCCCCC
T ss_pred EEEEEEcccCCC
Confidence 999999887644
No 202
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=1.9e-17 Score=125.36 Aligned_cols=82 Identities=16% Similarity=0.323 Sum_probs=75.5
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEeecC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKRTI 94 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~~~ 94 (349)
++++|||+|||.++|+++|+++|++||+|.+|.|+.++.++++++||||+|.+.++|++|++.+ ..+.++.|.|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4689999999999999999999999999999999999888999999999999999999999854 48999999999998
Q ss_pred CCCC
Q 018875 95 PKGS 98 (349)
Q Consensus 95 ~~~~ 98 (349)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7543
No 203
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=133.17 Aligned_cols=82 Identities=27% Similarity=0.484 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.|++..|.++.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eC
Q 018875 182 KA 183 (349)
Q Consensus 182 ~a 183 (349)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 204
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=130.73 Aligned_cols=84 Identities=12% Similarity=0.099 Sum_probs=75.8
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDI-TDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i-~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~~i~ 89 (349)
...+.+.++|||+|||+++|+++|+++|++|+.| .+|.|+.++ +++++|||||+|.++++|++||+. ...|.++.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 87 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAF 87 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEE
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEE
Confidence 3455678999999999999999999999999999 899999998 999999999999999999999985 3489999999
Q ss_pred EeecCCC
Q 018875 90 IKRTIPK 96 (349)
Q Consensus 90 v~~~~~~ 96 (349)
|.++.++
T Consensus 88 v~~a~~~ 94 (114)
T 2cpy_A 88 VHVVTLE 94 (114)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 205
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=8.9e-18 Score=134.78 Aligned_cols=90 Identities=17% Similarity=0.293 Sum_probs=78.5
Q ss_pred CCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--C---
Q 018875 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITD--SVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--H--- 81 (349)
Q Consensus 9 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~--- 81 (349)
...+......++|||+|||+++|+++|+++|++||+|+. |+|++++.+++++|||||+|.+. +|++|++.+ .
T Consensus 14 ~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 14 GSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 334445577889999999999999999999999999976 99999999999999999999999 999999843 3
Q ss_pred -ccCCcEEEEeecCCCCCC
Q 018875 82 -IINGKQVEIKRTIPKGSG 99 (349)
Q Consensus 82 -~~~g~~i~v~~~~~~~~~ 99 (349)
.++++.|.|+++.+....
T Consensus 93 ~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp CCGGGCCCCCEECCCSCCC
T ss_pred ccCCCEEEEEEECCCCCCC
Confidence 789999999998876443
No 206
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.6e-17 Score=124.96 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=71.5
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--C--ccCCcEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--H--IINGKQV 88 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~--~~~g~~i 88 (349)
....++++|||+|||+++|+++|+++|++||+|++|+|+++ |+||||+|++.++|++|++.+ + .+.+++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34567899999999999999999999999999999998874 489999999999999999843 2 5899999
Q ss_pred EEeecCCCCCCC
Q 018875 89 EIKRTIPKGSGQ 100 (349)
Q Consensus 89 ~v~~~~~~~~~~ 100 (349)
.|.++..+....
T Consensus 84 ~V~~a~~~~~~~ 95 (104)
T 1wex_A 84 FFNYSTSKRITR 95 (104)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCccccC
Confidence 999998765443
No 207
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=125.08 Aligned_cols=82 Identities=27% Similarity=0.537 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|||+++|+++|+++|++||.|+.|.|+++ ++||||+|++.++|++||+.|++..|.+++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3457789999999999999999999999999999999854 6799999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 018875 182 KAEPKKSS 189 (349)
Q Consensus 182 ~a~~~~~~ 189 (349)
+++++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpj_A 85 FACHSASL 92 (99)
T ss_dssp ESSCCSCC
T ss_pred EcCCCCCC
Confidence 99986543
No 208
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=1.3e-17 Score=131.41 Aligned_cols=82 Identities=26% Similarity=0.309 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCc---eEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGK---VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~---v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
..+.++|||.|||+++|+++|+++|++|+. |..|+|+.++. +++++||||+|+++++|++||+ |+++.|.++.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999999 89999999976 9999999999999999999999 899999999999
Q ss_pred EEeCCCC
Q 018875 180 IKKAEPK 186 (349)
Q Consensus 180 v~~a~~~ 186 (349)
|.++.++
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998754
No 209
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=1.3e-17 Score=134.43 Aligned_cols=91 Identities=22% Similarity=0.433 Sum_probs=80.8
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcE
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQ 87 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~ 87 (349)
..+.+..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.++ .|.++.
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344555678899999999999999999999999999999999998889999999999999999999998554 899999
Q ss_pred EEEeecCCCCCCC
Q 018875 88 VEIKRTIPKGSGQ 100 (349)
Q Consensus 88 i~v~~~~~~~~~~ 100 (349)
|.|+++.+.....
T Consensus 119 l~V~~a~~~~~~~ 131 (135)
T 2lea_A 119 LRVQMARYGRPPD 131 (135)
T ss_dssp CEEEECCCCCCCT
T ss_pred EEEEECCCCCCCc
Confidence 9999998765433
No 210
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.1e-18 Score=134.40 Aligned_cols=84 Identities=19% Similarity=0.275 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+..+|||.|||+++|+++|+++|++||.|..+.++.+..++++++||||+|+++++|++||+ ||+..|.++.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34466899999999999999999999999999987777777899999999999999999999999 99999999999999
Q ss_pred eCCCC
Q 018875 182 KAEPK 186 (349)
Q Consensus 182 ~a~~~ 186 (349)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98764
No 211
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=127.78 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC--CcccCCeEEE
Q 018875 103 DFKTKKIFVGGIPSS-VSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN--MIDMAGTQVE 179 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~-~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~--~~~~~g~~i~ 179 (349)
..+.++|||.|||++ +|+++|+++|++||.|.+|.|++ +++||||+|++.++|++||+.|+ ...|.+++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446889999999998 99999999999999999999974 36799999999999999999875 5679999999
Q ss_pred EEeCCCCCCCC
Q 018875 180 IKKAEPKKSSN 190 (349)
Q Consensus 180 v~~a~~~~~~~ 190 (349)
|.+++.+....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998776543
No 212
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=128.61 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=78.5
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHH---HHHhcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHccC
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFN---KHFGKYGDITDSVIMKDRYT---GQPRGFGFITYADPSVVDKVIEDTH 81 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~---~~F~~~G~i~~~~i~~~~~~---g~~kG~afVef~~~~~a~~al~~~~ 81 (349)
+..........++|||+|||+++|+++|+ ++|++||+|++|.|+.+..+ .++++||||+|+++++|++||+.++
T Consensus 5 s~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 5 SSGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp SSCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 34445566678999999999999999999 99999999999999998764 3567999999999999999999654
Q ss_pred --ccCCcEEEEeecCCCC
Q 018875 82 --IINGKQVEIKRTIPKG 97 (349)
Q Consensus 82 --~~~g~~i~v~~~~~~~ 97 (349)
.|+++.|.|+++.++.
T Consensus 85 g~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 85 NVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp TEEETTEEEEEESCCCCS
T ss_pred CCEECCEEEEEEeccccc
Confidence 8999999999998765
No 213
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=3.4e-17 Score=126.47 Aligned_cols=82 Identities=16% Similarity=0.344 Sum_probs=74.9
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
.....+.++|||.|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|.+.++|++|++.++ .|.++.|.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4455678999999999999999999999999999999999998 99999999999999999999999544 89999999
Q ss_pred EeecC
Q 018875 90 IKRTI 94 (349)
Q Consensus 90 v~~~~ 94 (349)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 214
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=124.58 Aligned_cols=81 Identities=14% Similarity=0.263 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
.....++|||.|||+++|+++|+++|++||.|. +.++.+ ++++||||+|++.++|++||+.||+..|.++.|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344678999999999999999999999999997 666654 568899999999999999999999999999999999
Q ss_pred eCCCCC
Q 018875 182 KAEPKK 187 (349)
Q Consensus 182 ~a~~~~ 187 (349)
+++++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
No 215
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.3e-17 Score=126.46 Aligned_cols=84 Identities=20% Similarity=0.414 Sum_probs=74.1
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--cc------
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--II------ 83 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~------ 83 (349)
...+.+.++|||+|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|.+.++|++||+.++ .|
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 4455678999999999999999999999999999999999998 89999999999999999999999554 55
Q ss_pred --CCcEEEEeecCCC
Q 018875 84 --NGKQVEIKRTIPK 96 (349)
Q Consensus 84 --~g~~i~v~~~~~~ 96 (349)
.+++|.|+++.+.
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5677888887643
No 216
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=4.9e-18 Score=129.73 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCc------CCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCC-
Q 018875 15 GASPGKIFIGGLPK------DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IING- 85 (349)
Q Consensus 15 ~~~~~~lfV~nLp~------~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g- 85 (349)
+..+++|||+|||+ ++++++|+++|++||+|++|.|+.++.+++++|||||+|.++++|++||+.++ .+.+
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 44578999999999 99999999999999999999999999889999999999999999999998554 8898
Q ss_pred cEEEEeecCC
Q 018875 86 KQVEIKRTIP 95 (349)
Q Consensus 86 ~~i~v~~~~~ 95 (349)
+.|.|.++.+
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999998865
No 217
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.4e-17 Score=129.23 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYG-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
...+|||.|||+++|+++|+++|++|| +|..|.|+.. ++++||||+|++.++|++||++||+.+|.+++|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 567999999999999999999999999 8999988643 47899999999999999999999999999999999998
Q ss_pred CCC
Q 018875 184 EPK 186 (349)
Q Consensus 184 ~~~ 186 (349)
+..
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 754
No 218
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=4.2e-17 Score=122.36 Aligned_cols=83 Identities=18% Similarity=0.472 Sum_probs=74.7
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
...+.++|||+|||+++|+++|+++|++||+|+++.|+.+ ++++++||||+|.+.++|++|++.++ .+.++.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457789999999999999999999999999999999984 78899999999999999999999544 8999999999
Q ss_pred ecCCCCC
Q 018875 92 RTIPKGS 98 (349)
Q Consensus 92 ~~~~~~~ 98 (349)
++.+...
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9887644
No 219
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=128.38 Aligned_cols=84 Identities=21% Similarity=0.488 Sum_probs=76.7
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
.+.+.++|||+|||+++|+++|+++|++||+|.++.|+.++.++++++||||+|.+.++|++|++.++ .+.++.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999998554 8899999999
Q ss_pred ecCCCC
Q 018875 92 RTIPKG 97 (349)
Q Consensus 92 ~~~~~~ 97 (349)
++.+..
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 987653
No 220
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=125.54 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
++|||.|||+++|+++|+++|++||+|+.|.|+.+ +++||||+|+++++|++|+++|++..|.++.|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999887 6789999999999999999999999999999999999987
Q ss_pred CCC
Q 018875 187 KSS 189 (349)
Q Consensus 187 ~~~ 189 (349)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 221
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=3.1e-17 Score=129.10 Aligned_cols=83 Identities=13% Similarity=0.234 Sum_probs=73.9
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGD---ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQ 87 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~---i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~ 87 (349)
.......++|||+|||+++|+++|+++|++|++ |++|+|+.++. ++++|||||+|.++++|++||+ +.+.|.++.
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 344567889999999999999999999999999 89999999985 9999999999999999999999 333889999
Q ss_pred EEEeecCC
Q 018875 88 VEIKRTIP 95 (349)
Q Consensus 88 i~v~~~~~ 95 (349)
|.|.++..
T Consensus 90 i~V~~a~~ 97 (118)
T 2db1_A 90 IEVFKSHR 97 (118)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99988753
No 222
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.6e-17 Score=119.39 Aligned_cols=78 Identities=19% Similarity=0.496 Sum_probs=72.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhC-CCcccCCeEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG-NMIDMAGTQVE 179 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l-~~~~~~g~~i~ 179 (349)
..+.+.++|||.|||+++|+++|+++|++||.|..|.|+.+ ++||||+|++.++|++|++.| ++..+.+++|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34457789999999999999999999999999999999874 679999999999999999998 99999999999
Q ss_pred EEeCC
Q 018875 180 IKKAE 184 (349)
Q Consensus 180 v~~a~ 184 (349)
|++++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 223
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=3.2e-17 Score=136.87 Aligned_cols=91 Identities=19% Similarity=0.367 Sum_probs=78.1
Q ss_pred CCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 9 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
.+.+....+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+.++ .|.++
T Consensus 63 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 142 (165)
T 1rk8_A 63 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 142 (165)
T ss_dssp ---CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3445556678899999999999999999999999999999999998899999999999999999999998554 79999
Q ss_pred EEEEeecCCCCCC
Q 018875 87 QVEIKRTIPKGSG 99 (349)
Q Consensus 87 ~i~v~~~~~~~~~ 99 (349)
.|.|.++.++...
T Consensus 143 ~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 143 TIQVDWCFVKGPK 155 (165)
T ss_dssp ECEEEESEECC--
T ss_pred EEEEEEecCCCCC
Confidence 9999998766543
No 224
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-18 Score=130.92 Aligned_cols=84 Identities=23% Similarity=0.353 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||.|||+++|+++|+++|++||.|.. .++.+..++++++||||+|++.++|++||+ |++..|.++.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999999888 666676788899999999999999999999 999999999999999
Q ss_pred CCCCCC
Q 018875 183 AEPKKS 188 (349)
Q Consensus 183 a~~~~~ 188 (349)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987654
No 225
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=124.26 Aligned_cols=80 Identities=16% Similarity=0.381 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCc-eEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC-cccCCeEEEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGK-VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM-IDMAGTQVEI 180 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~-v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~-~~~~g~~i~v 180 (349)
..+.++|||.|||+++|+++|+++|++||. |..+.+. +++||||+|+++++|++||+.||+ ..|.++.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 346789999999999999999999999999 5555553 467999999999999999999999 9999999999
Q ss_pred EeCCCCCCC
Q 018875 181 KKAEPKKSS 189 (349)
Q Consensus 181 ~~a~~~~~~ 189 (349)
++++++...
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999987543
No 226
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.5e-17 Score=121.29 Aligned_cols=80 Identities=21% Similarity=0.434 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
...++|||.|||+++|+++|+++|++||.|.+| +.++.+++ ||||+|.++++|++||+ |++..|.++.|+|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356799999999999999999999999999987 55555555 99999999999999999 9999999999999988
Q ss_pred CCCCCC
Q 018875 184 EPKKSS 189 (349)
Q Consensus 184 ~~~~~~ 189 (349)
.++...
T Consensus 80 ~~~~~~ 85 (94)
T 2e5g_A 80 EQKEFQ 85 (94)
T ss_dssp CCSCCC
T ss_pred CcCCCC
Confidence 766543
No 227
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=123.34 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=69.3
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC----ccCCcE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH----IINGKQ 87 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~----~~~g~~ 87 (349)
.....++++|||+|||+++|+++|+++|++||+|++++|++. |+||||+|++.++|++|++.++ .+.+++
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 344567889999999999999999999999999999999864 4899999999999999998543 378999
Q ss_pred EEEeecCCCC
Q 018875 88 VEIKRTIPKG 97 (349)
Q Consensus 88 i~v~~~~~~~ 97 (349)
|.|.++.+++
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999997653
No 228
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=3.5e-17 Score=126.76 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=73.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEE
Q 018875 99 GQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (349)
Q Consensus 99 ~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i 178 (349)
....+.+.++|||.|||+++|+++|+++|++||.|+.|.|+ ++||||+|++.++|++|++.|++..|.++.|
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34455678999999999999999999999999999999998 5699999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q 018875 179 EIKKAEPKKS 188 (349)
Q Consensus 179 ~v~~a~~~~~ 188 (349)
+|.+++++..
T Consensus 96 ~V~~a~~~~~ 105 (108)
T 2jvo_A 96 EVVYSKLPAK 105 (108)
T ss_dssp EEESCSCCC-
T ss_pred EEEEecCCCC
Confidence 9999987643
No 229
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=5.7e-17 Score=120.80 Aligned_cols=80 Identities=23% Similarity=0.576 Sum_probs=73.3
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~~ 95 (349)
+.++|||+|||+++|+++|+++|++||+|.++.|+.++.++++++||||+|.+.++|++|++ +...+.++.|.|+++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 46799999999999999999999999999999999998899999999999999999999994 23389999999999875
Q ss_pred C
Q 018875 96 K 96 (349)
Q Consensus 96 ~ 96 (349)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 230
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.1e-17 Score=125.95 Aligned_cols=86 Identities=19% Similarity=0.348 Sum_probs=77.0
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCC-eeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHcc----CccCCcEE
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGD-ITDSVIM-KDRYTGQPRGFGFITYADPSVVDKVIEDT----HIINGKQV 88 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~-i~~~~i~-~~~~~g~~kG~afVef~~~~~a~~al~~~----~~~~g~~i 88 (349)
+.+.++|||+|||+++|+++|+++|++||+ |++|.|+ .++.++++++||||+|.+.++|++|++.+ ..+.++.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 77778899999999999999999999964 47899999
Q ss_pred EEeecCCCCCCC
Q 018875 89 EIKRTIPKGSGQ 100 (349)
Q Consensus 89 ~v~~~~~~~~~~ 100 (349)
.|+++.++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999998765543
No 231
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.8e-17 Score=127.35 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=73.0
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc----CccCCcEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT----HIINGKQV 88 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~----~~~~g~~i 88 (349)
....++++|||+|||+++|+++|+++|++||+|++|.|+++ ++||||+|++.++|++|++.+ ..|.+++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34456789999999999999999999999999999999986 489999999999999999844 36999999
Q ss_pred EEeecCCCCCCCC
Q 018875 89 EIKRTIPKGSGQS 101 (349)
Q Consensus 89 ~v~~~~~~~~~~~ 101 (349)
.|.++.++.....
T Consensus 100 ~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 100 YIQFSNHKELKTD 112 (119)
T ss_dssp EEEECSSSSCCCC
T ss_pred EEEEccCCCCCcc
Confidence 9999987765543
No 232
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=1.3e-16 Score=126.61 Aligned_cols=87 Identities=14% Similarity=0.278 Sum_probs=78.2
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
......++|||+|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|.+.++|++|++.++ .+.++.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345677899999999999999999999999999999999998 89999999999999999999999554 899999999
Q ss_pred eecCCCCCCC
Q 018875 91 KRTIPKGSGQ 100 (349)
Q Consensus 91 ~~~~~~~~~~ 100 (349)
+++.+.....
T Consensus 109 ~~a~~~~~~~ 118 (124)
T 2kt5_A 109 QLVASQIDLE 118 (124)
T ss_dssp EEECCTTCCC
T ss_pred EEeCCCCCCC
Confidence 9988754433
No 233
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=4.8e-17 Score=118.88 Aligned_cols=72 Identities=8% Similarity=0.100 Sum_probs=65.9
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~ 93 (349)
-.+..|||+||++.+||++|+++|.+||+|+++.++. ++|||||+|.++++|++|++.++ ++.+++|.|+.+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3577899999999999999999999999999999976 46999999999999999999665 899999999876
No 234
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-17 Score=130.05 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~ 93 (349)
...++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++|| .++ .|.++.|.|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34579999999999999999999999999999999999988999999999999999999999 544 899999999987
Q ss_pred CCC
Q 018875 94 IPK 96 (349)
Q Consensus 94 ~~~ 96 (349)
.++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 643
No 235
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=8.9e-17 Score=130.19 Aligned_cols=82 Identities=23% Similarity=0.461 Sum_probs=74.8
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
.....+.++|||+|||.++|+++|+++|++||+|+++.|+.++.++++++||||+|.+.++|++|++.++ .|.++.|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455678999999999999999999999999999999999998899999999999999999999998665 78999999
Q ss_pred Eeec
Q 018875 90 IKRT 93 (349)
Q Consensus 90 v~~~ 93 (349)
|+++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9874
No 236
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=121.65 Aligned_cols=81 Identities=20% Similarity=0.477 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEee
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQ-PRGFGFITYADPSVVDKVIEDT--HIINGKQVEIKR 92 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~-~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~~ 92 (349)
...++|||+|||+++|+++|+++|++||+|.++.|+.+..+.. +++||||+|.+.++|++|++.+ ..+.++.|.|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999886655 8999999999999999999954 489999999999
Q ss_pred cCCC
Q 018875 93 TIPK 96 (349)
Q Consensus 93 ~~~~ 96 (349)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8764
No 237
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.3e-17 Score=127.83 Aligned_cols=86 Identities=26% Similarity=0.570 Sum_probs=76.8
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEEee
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKR 92 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~ 92 (349)
..+..+++|||+|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|.+.++|++|+++.+.++++.|.|.+
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGP 82 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEE
Confidence 344567899999999999999999999999999999999998 9999999999999999999999955689999999999
Q ss_pred cCCCCCC
Q 018875 93 TIPKGSG 99 (349)
Q Consensus 93 ~~~~~~~ 99 (349)
+.++...
T Consensus 83 a~~~~~~ 89 (102)
T 2xs2_A 83 AIRKQNL 89 (102)
T ss_dssp EEECC--
T ss_pred CCcCcch
Confidence 8765443
No 238
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=122.51 Aligned_cols=85 Identities=19% Similarity=0.355 Sum_probs=73.7
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
....+.+.++|||+|||+++|+++|+++|++|++| .|+.+ .++++++||||+|.++++|++||+.++ .|.++.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 34466778999999999999999999999999877 56666 588999999999999999999999655 8899999
Q ss_pred EEeecCCCCCC
Q 018875 89 EIKRTIPKGSG 99 (349)
Q Consensus 89 ~v~~~~~~~~~ 99 (349)
.|+++.++...
T Consensus 84 ~v~~a~~~~~~ 94 (101)
T 2fc9_A 84 RLELQGPRGSP 94 (101)
T ss_dssp EEEECSSCCCC
T ss_pred EEEEcCCCCCC
Confidence 99999876543
No 239
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.6e-17 Score=122.43 Aligned_cols=81 Identities=6% Similarity=0.105 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCcCCcHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 15 GASPGKIFIGGLPKDTTYATFN----KHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~----~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
..+.++|||+|||+++|+++|+ ++|++||+|++|.|+.++.+ ++||||+|.++++|++|++.++ .+.++.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4466899999999999999999 99999999999999998755 7899999999999999999655 8999999
Q ss_pred EEeecCCCCC
Q 018875 89 EIKRTIPKGS 98 (349)
Q Consensus 89 ~v~~~~~~~~ 98 (349)
.|+++.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 240
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2.6e-17 Score=118.60 Aligned_cols=74 Identities=42% Similarity=0.754 Sum_probs=68.9
Q ss_pred eEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeec
Q 018875 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRT 93 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~ 93 (349)
+|||+|||+++|+++|+++|++||+|.++.|+.++.++++++||||+|.++++|++|++ +...+.++.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998889999999999999999999998 344899999999864
No 241
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=7.3e-17 Score=128.32 Aligned_cols=82 Identities=15% Similarity=0.302 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELK----NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~----~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i 178 (349)
..+.++|||.|||+++++++|+ ++|++||.|.+|.+.. +++++|||||+|++.++|++||+.||+..|.+++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3467899999999999999876 6999999999988753 57789999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q 018875 179 EIKKAEPKK 187 (349)
Q Consensus 179 ~v~~a~~~~ 187 (349)
+|.+++++.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998764
No 242
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=7.8e-18 Score=128.75 Aligned_cols=91 Identities=19% Similarity=0.389 Sum_probs=77.9
Q ss_pred CCCCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--cc
Q 018875 6 KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--II 83 (349)
Q Consensus 6 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~ 83 (349)
..+........+.++|||+|||+++|+++|+++|++|++|.+ .++.+..++++++||||+|.+.++|++||+ ++ .|
T Consensus 5 ~~~p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~ 82 (101)
T 1fj7_A 5 LEDPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV 82 (101)
T ss_dssp CCCSCCSTTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB
T ss_pred CCCCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE
Confidence 344444455667899999999999999999999999999988 667776688999999999999999999998 54 88
Q ss_pred CCcEEEEeecCCCCC
Q 018875 84 NGKQVEIKRTIPKGS 98 (349)
Q Consensus 84 ~g~~i~v~~~~~~~~ 98 (349)
.++.|.|+++.++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 83 FGNEIKLEKPKGRDG 97 (101)
T ss_dssp TTBCCEEECCSCCCC
T ss_pred CCcEEEEEEcCCCCC
Confidence 999999999887544
No 243
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-17 Score=123.07 Aligned_cols=79 Identities=22% Similarity=0.424 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
..+.++|||+|||+++|+++|+++|++||+|.++.|+.++.++++++||||+|.++++|++|++.++ .+.++.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 3567899999999999999999999999999999999998899999999999999999999999554 77777766654
Q ss_pred c
Q 018875 93 T 93 (349)
Q Consensus 93 ~ 93 (349)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 244
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=119.63 Aligned_cols=75 Identities=37% Similarity=0.750 Sum_probs=70.4
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc-CccCCcEEEEeec
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRT 93 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~-~~~~g~~i~v~~~ 93 (349)
++|||+|||+++|+++|+++|++||+|.++.|+.++.++++++||||+|.++++|++|++.+ ..++++.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 57999999999999999999999999999999999888999999999999999999999954 4889999999876
No 245
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.4e-17 Score=122.86 Aligned_cols=86 Identities=29% Similarity=0.530 Sum_probs=75.3
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQV 88 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i 88 (349)
......+.++|||+|||+++|+++|+++|+.| .+|.++.++.++++++||||+|.++++|++||+.+ ..|.++.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 8 PNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp TSSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34556778999999999999999999999976 47888888889999999999999999999999854 48999999
Q ss_pred EEeecCCCCCC
Q 018875 89 EIKRTIPKGSG 99 (349)
Q Consensus 89 ~v~~~~~~~~~ 99 (349)
.|+++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2fc8_A 85 TLDWAKPKGEG 95 (102)
T ss_dssp EEEECCCCCSS
T ss_pred EEEEecCCCCC
Confidence 99999876543
No 246
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=1.2e-16 Score=132.27 Aligned_cols=87 Identities=23% Similarity=0.449 Sum_probs=78.9
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
......++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+.++ .|.++.|.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344568899999999999999999999999999999999998899999999999999999999998655 899999999
Q ss_pred eecCCCCCC
Q 018875 91 KRTIPKGSG 99 (349)
Q Consensus 91 ~~~~~~~~~ 99 (349)
+++.+....
T Consensus 145 ~~a~~~~~~ 153 (158)
T 2kn4_A 145 QMARYGRPP 153 (158)
T ss_dssp EEECCSSCC
T ss_pred EECCCCCCC
Confidence 999876443
No 247
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.5e-17 Score=125.65 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=70.2
Q ss_pred CCCCCceEEEcCCCcC-CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc----CccCCcEE
Q 018875 14 DGASPGKIFIGGLPKD-TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT----HIINGKQV 88 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~-~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~----~~~~g~~i 88 (349)
+..++++|||+|||++ +|+++|+++|++||+|++|+|++. ++||||+|++.++|++|++.+ ..|.+++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3567889999999998 999999999999999999999854 589999999999999999854 25899999
Q ss_pred EEeecCCCCCC
Q 018875 89 EIKRTIPKGSG 99 (349)
Q Consensus 89 ~v~~~~~~~~~ 99 (349)
.|.++..+...
T Consensus 95 ~V~~a~~~~~~ 105 (112)
T 1x4f_A 95 KVDLSEKYKKL 105 (112)
T ss_dssp EEEEECSCSSS
T ss_pred EEEECcccccc
Confidence 99998765443
No 248
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.1e-17 Score=120.51 Aligned_cols=75 Identities=35% Similarity=0.683 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
+|||.|||+++|+++|+++|++||+|..|.|+.++.++++++||||+|+++++|++|++. ++..+.++.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999996 889999999999875
No 249
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=126.73 Aligned_cols=88 Identities=15% Similarity=0.335 Sum_probs=70.9
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHH-ccCccCC
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDR-YTGQPRGFGFITYADPSVVDKVIE-DTHIING 85 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~-~~g~~kG~afVef~~~~~a~~al~-~~~~~~g 85 (349)
+.+........++|||+|||+++|+++|+++|++|| |.+|.|+.++ .++++++||||+|.+.++|++||+ +...|.+
T Consensus 9 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g 87 (100)
T 2j76_E 9 HHRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 87 (100)
T ss_dssp -----------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTT
T ss_pred CCCCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 334455667889999999999999999999999999 9999999998 589999999999999999999994 2338999
Q ss_pred cEEEEeecCCC
Q 018875 86 KQVEIKRTIPK 96 (349)
Q Consensus 86 ~~i~v~~~~~~ 96 (349)
+.|.|+++.++
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999998764
No 250
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=8.9e-17 Score=132.22 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCC--eEEEEEe
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG--TQVEIKK 182 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g--~~i~v~~ 182 (349)
...+|||.||++.+|+++|+++|++||.|++|.|+... +++||||+|++.++|++|++.||+.+|.+ ++|+|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 45678999999999999999999999999999997542 57899999999999999999999999976 9999999
Q ss_pred CCCCC
Q 018875 183 AEPKK 187 (349)
Q Consensus 183 a~~~~ 187 (349)
++++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 99864
No 251
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-17 Score=130.12 Aligned_cols=82 Identities=13% Similarity=0.276 Sum_probs=72.9
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEee
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKR 92 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~ 92 (349)
.....++|||+|||+++|+++|+++|++|++|.++.++.+..+++++|||||+|.+.++|++||+ +...|.++.|.|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 34567899999999999999999999999999987777777799999999999999999999999 33389999999998
Q ss_pred cCC
Q 018875 93 TIP 95 (349)
Q Consensus 93 ~~~ 95 (349)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 764
No 252
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=120.98 Aligned_cols=73 Identities=16% Similarity=0.353 Sum_probs=68.0
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCe-EE
Q 018875 106 TKKIFVGGIPSSV------SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QV 178 (349)
Q Consensus 106 ~~~l~V~nL~~~~------t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~-~i 178 (349)
+++|||.|||+++ |+++|+++|++||.|..|.|+ +.++++++||||+|+++++|++||+.||+..|.++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 46789999999999999999999999999999999 88
Q ss_pred EE
Q 018875 179 EI 180 (349)
Q Consensus 179 ~v 180 (349)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 253
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-18 Score=136.37 Aligned_cols=86 Identities=19% Similarity=0.353 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEE--------EEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLE--------HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA 174 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~--------v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~ 174 (349)
..+.++|||.|||+++|+++|+++|++||.|.. |.|+.++.++++++||||+|++.++|++||+.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999998 899999889999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCC
Q 018875 175 GTQVEIKKAEPKKS 188 (349)
Q Consensus 175 g~~i~v~~a~~~~~ 188 (349)
+++|+|.+++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987643
No 254
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=6.2e-17 Score=130.25 Aligned_cols=81 Identities=12% Similarity=0.209 Sum_probs=73.5
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGD---ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQ 87 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~---i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~ 87 (349)
++..+.++|||+|||+++|+++|+++|++|++ |++|.|+.++. ++++|||||+|+++++|++||+ ++ .|.++.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34566789999999999999999999999999 89999999985 9999999999999999999999 44 899999
Q ss_pred EEEeecCC
Q 018875 88 VEIKRTIP 95 (349)
Q Consensus 88 i~v~~~~~ 95 (349)
|.|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99988753
No 255
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4e-16 Score=118.26 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+.++|||.|| ++|+++|+++|++||.|..|.|. ++++||||+|++.++|++||+.|++..|.++.|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3446789999996 89999999999999999999995 457799999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 018875 182 KAEPKKSS 189 (349)
Q Consensus 182 ~a~~~~~~ 189 (349)
++.++...
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99887544
No 256
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=6.9e-17 Score=133.38 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=73.5
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYG--DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G--~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
..++|||+|||+++|+++|+++|++|| +|.+|+|+.++.+++++|||||+|.+.++|++||+.++ .|.++.|.|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 467999999999999999999999999 99999999999999999999999999999999999654 89999999998
Q ss_pred cCCC
Q 018875 93 TIPK 96 (349)
Q Consensus 93 ~~~~ 96 (349)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8643
No 257
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=4.3e-17 Score=123.36 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=74.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++|+.|..+ ..++++++||||+|.++++|++||+.|++..|.++.|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999887655 356788999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 018875 181 KKAEPKKS 188 (349)
Q Consensus 181 ~~a~~~~~ 188 (349)
+++.++..
T Consensus 86 ~~a~~~~~ 93 (96)
T 1fjc_A 86 YYTGEKGG 93 (96)
T ss_dssp EECSSSCC
T ss_pred EEcCCCCC
Confidence 99987643
No 258
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=128.65 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCc---eEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGK---VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~---v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i 178 (349)
......+|||.|||+++|+++|+++|++||. |..|.|+.++. ++++|||||+|++.++|++||+ |++..|.++.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3446789999999999999999999999998 89999999977 9999999999999999999999 89999999999
Q ss_pred EEEeCCCCC
Q 018875 179 EIKKAEPKK 187 (349)
Q Consensus 179 ~v~~a~~~~ 187 (349)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987643
No 259
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.7e-17 Score=124.36 Aligned_cols=76 Identities=17% Similarity=0.396 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
..++|||.|||+++|+++|+++|++||.|.+|.|+ ++++||||+|++.++|++||+.||+..|.++.|+|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 56899999999999999999999999999999998 357799999999999999999999999999999999988
Q ss_pred CC
Q 018875 185 PK 186 (349)
Q Consensus 185 ~~ 186 (349)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 260
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=121.97 Aligned_cols=85 Identities=27% Similarity=0.477 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCC
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IING 85 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g 85 (349)
+.+.+....+.++|||+|||+++|+++|+++|++||+|++|.|+++ ++||||+|.+.++|++|++.++ .|.+
T Consensus 5 s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 5 SSGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp SSCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3444556678899999999999999999999999999999999865 4899999999999999998544 8999
Q ss_pred cEEEEeecCCCCC
Q 018875 86 KQVEIKRTIPKGS 98 (349)
Q Consensus 86 ~~i~v~~~~~~~~ 98 (349)
+.|.|+++.++..
T Consensus 79 ~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 79 KQLRVRFACHSAS 91 (99)
T ss_dssp BCCEEEESSCCSC
T ss_pred ceEEEEEcCCCCC
Confidence 9999999987544
No 261
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-16 Score=121.94 Aligned_cols=81 Identities=15% Similarity=0.366 Sum_probs=71.9
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCC-----
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IING----- 85 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g----- 85 (349)
......++|||+|||+++|+++|+++|++||+|++|.|+.+ +||||+|+++++|++||+.++ .|.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34466899999999999999999999999999999999886 799999999999999999665 7788
Q ss_pred cEEEEeecCCCCCCC
Q 018875 86 KQVEIKRTIPKGSGQ 100 (349)
Q Consensus 86 ~~i~v~~~~~~~~~~ 100 (349)
+.|.|+++.++....
T Consensus 83 ~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 83 AYIRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEEEESSCCSCCC
T ss_pred eEEEEEeCCCCCCCC
Confidence 999999998765443
No 262
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.5e-16 Score=120.61 Aligned_cols=77 Identities=23% Similarity=0.518 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 102 KDFKTKKIFVGGIPS-SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~-~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
...+.++|||.|||+ ++++++|+++|++||.|..|.|. ++||||+|++.++|++||+.|++..+.++.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445788999999998 99999999999999999999984 569999999999999999999999999999999
Q ss_pred EeCCCC
Q 018875 181 KKAEPK 186 (349)
Q Consensus 181 ~~a~~~ 186 (349)
++++++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999865
No 263
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=129.60 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCce----EEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKV----LEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v----~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
+..+|||.|||+++|+++|+++|++|+.| ..|.|+.+ .+++++|||||+|+++++|++||++ +++.|.++.|+|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 56799999999999999999999999875 68999998 5899999999999999999999997 999999999999
Q ss_pred EeCCCC
Q 018875 181 KKAEPK 186 (349)
Q Consensus 181 ~~a~~~ 186 (349)
..+.++
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988654
No 264
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=4.3e-17 Score=129.22 Aligned_cols=82 Identities=21% Similarity=0.361 Sum_probs=72.3
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCee--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCCcEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDIT--DSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQV 88 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~--~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~~i 88 (349)
..+..+.++|||+|||+++|+++|+++|++| .|+ +|.|+.++. ++++|||||+|+++++|++||+. ...|.++.|
T Consensus 36 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I 113 (126)
T 2hgm_A 36 SADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYI 113 (126)
T ss_dssp TTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence 3445677899999999999999999999999 777 899999985 99999999999999999999984 348899999
Q ss_pred EEeecCC
Q 018875 89 EIKRTIP 95 (349)
Q Consensus 89 ~v~~~~~ 95 (349)
.|..+.+
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9987754
No 265
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=6e-17 Score=136.63 Aligned_cols=86 Identities=16% Similarity=0.281 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||.|||+++++++|+++|++||.|+.|.|+.+. ++++++||||+|++.++|++||++|++..|.+++|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 018875 183 AEPKKSS 189 (349)
Q Consensus 183 a~~~~~~ 189 (349)
+......
T Consensus 164 a~~~~~~ 170 (177)
T 2f3j_A 164 VASQIDL 170 (177)
T ss_dssp ESSGGGG
T ss_pred ecCCCCC
Confidence 9876443
No 266
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.6e-17 Score=118.59 Aligned_cols=74 Identities=35% Similarity=0.607 Sum_probs=69.0
Q ss_pred eEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCCcEEEEeec
Q 018875 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRT 93 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~~i~v~~~ 93 (349)
+|||+|||+++|+++|+++|++||+|.++.|+.++.++++++||||+|.++++|++|++. .+.+.++.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999988899999999999999999999994 45899999988764
No 267
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=124.92 Aligned_cols=80 Identities=21% Similarity=0.410 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHccCccCCcEEEE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT---GQPRGFGFITYADPSVVDKVIEDTHIINGKQVEI 90 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~---g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v 90 (349)
.....++|||+|||+++|+++|+++|++||+|+ +.++.+..+ ++++|||||+|+++++|++||+.++.++++.|.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~ 82 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLC 82 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEe
Confidence 345678999999999999999999999999999 888887766 6999999999999999999999888889999888
Q ss_pred eecC
Q 018875 91 KRTI 94 (349)
Q Consensus 91 ~~~~ 94 (349)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 7544
No 268
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=5e-17 Score=123.05 Aligned_cols=78 Identities=23% Similarity=0.474 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 103 DFKTKKIFVGGIPS-SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 103 ~~~~~~l~V~nL~~-~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
..+.++|||.|||+ ++|+++|+++|++||.|..|.|. ++||||+|++.++|++||++|++..+.+++|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34788999999999 99999999999999999999995 5699999999999999999999999999999999
Q ss_pred eCCCCCC
Q 018875 182 KAEPKKS 188 (349)
Q Consensus 182 ~a~~~~~ 188 (349)
+++++..
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9987654
No 269
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.8e-17 Score=127.34 Aligned_cols=89 Identities=18% Similarity=0.255 Sum_probs=73.4
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
.....+.++|||+|||+++|+++|+++|++||.|.++.+..+..++++++||||+|.+.++|++||+.++ .|.++.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3344577999999999999999999999999998544333333377899999999999999999999554 88999999
Q ss_pred EeecCCCCCCC
Q 018875 90 IKRTIPKGSGQ 100 (349)
Q Consensus 90 v~~~~~~~~~~ 100 (349)
|+++.++....
T Consensus 99 v~~a~~~~~~~ 109 (115)
T 2cpx_A 99 IEFGKNKKQRS 109 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEccCCCCCC
Confidence 99998765543
No 270
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=8.6e-17 Score=141.31 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=72.9
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYG--DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G--~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
..++|||+|||+++|+++|+++|++|| +|++|+|++++.+++++|||||+|.+.++|++||+.++ .|.++.|.|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999999655 89999999998
Q ss_pred cCC
Q 018875 93 TIP 95 (349)
Q Consensus 93 ~~~ 95 (349)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 271
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=120.03 Aligned_cols=86 Identities=13% Similarity=0.358 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccC
Q 018875 7 SDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IIN 84 (349)
Q Consensus 7 ~~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~ 84 (349)
+..+...+....++|||+|||+++|+++|+++|++||+|. +.++.+ ++++||||+|.+.++|++|++.++ .|.
T Consensus 8 ~~~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 8 PGSPPGEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp CCCCCCSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred CCCCCCCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3444455667789999999999999999999999999997 666654 567999999999999999998544 899
Q ss_pred CcEEEEeecCCCC
Q 018875 85 GKQVEIKRTIPKG 97 (349)
Q Consensus 85 g~~i~v~~~~~~~ 97 (349)
++.|.|+++.++.
T Consensus 83 g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 83 TDTLRVALARQQR 95 (97)
T ss_dssp SSCCEEEECCCCC
T ss_pred CcEEEEEEcCCCC
Confidence 9999999987653
No 272
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=122.23 Aligned_cols=83 Identities=17% Similarity=0.346 Sum_probs=73.3
Q ss_pred CCCCCCCceEEEcCCCcCC------cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--cc
Q 018875 12 TGDGASPGKIFIGGLPKDT------TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--II 83 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~------te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~ 83 (349)
+.+....++|||+|||+++ |+++|+++|++||+|.+|.|+ +.+++++|||||+|.+.++|++|++.++ .+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 3445567899999999999 889999999999999999988 3578999999999999999999999665 88
Q ss_pred CCc-EEEEeecCCC
Q 018875 84 NGK-QVEIKRTIPK 96 (349)
Q Consensus 84 ~g~-~i~v~~~~~~ 96 (349)
.++ .|.|+++...
T Consensus 87 ~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 87 DKQHTFRVNLFTDF 100 (105)
T ss_dssp STTCEEEEECSCCC
T ss_pred CCCceEEEEEcchH
Confidence 998 9999998754
No 273
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-16 Score=118.85 Aligned_cols=80 Identities=16% Similarity=0.405 Sum_probs=70.7
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccC--CcE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IIN--GKQ 87 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~--g~~ 87 (349)
.....+.++|||+|||+++|+++|+++|++|++|++|.|+.+ ++||||+|.+.++|++|++.++ .+. ++.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 445567799999999999999999999999999999999865 4899999999999999999544 788 899
Q ss_pred EEEeecCCCC
Q 018875 88 VEIKRTIPKG 97 (349)
Q Consensus 88 i~v~~~~~~~ 97 (349)
|.|+++.++.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999998753
No 274
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.9e-17 Score=124.41 Aligned_cols=85 Identities=22% Similarity=0.574 Sum_probs=74.8
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcE
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQ 87 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~ 87 (349)
....+..+.++|||+|||.++|+++|+++|++||+|++|.|+.++ ..+++||||+|.+.++|++|++.++ .+.++.
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 334556678999999999999999999999999999999999985 3488999999999999999999544 899999
Q ss_pred EEEeecCCC
Q 018875 88 VEIKRTIPK 96 (349)
Q Consensus 88 i~v~~~~~~ 96 (349)
|.|+++.++
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998764
No 275
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=120.33 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEE-EEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEH-QIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v-~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
....++|||.|||+++|+++|+++|++||.|+.| .|+.++.++ .|||+|.+.++|++||+.||+..|.+++|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999 488776554 39999999999999999999999999999999
Q ss_pred eCCCCC
Q 018875 182 KAEPKK 187 (349)
Q Consensus 182 ~a~~~~ 187 (349)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 999874
No 276
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=9.2e-17 Score=119.84 Aligned_cols=82 Identities=30% Similarity=0.517 Sum_probs=65.4
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEI 90 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v 90 (349)
......+.++|||+|||+++|+++|+++|++||+|++|.|+.+ ++|||||+|+++++|+++......+.++.|.|
T Consensus 4 ~~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 4 SHHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHI 78 (89)
T ss_dssp -------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEE
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEE
Confidence 3445678899999999999999999999999999999999874 67999999999999997655544678999999
Q ss_pred eecCCCC
Q 018875 91 KRTIPKG 97 (349)
Q Consensus 91 ~~~~~~~ 97 (349)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9988654
No 277
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.8e-17 Score=125.76 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
..++|||.|||+++|+++|+++|++||.|..|.|+. +++||||+|++.++|++||+.||+..|.++.|.|+++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999999874 46799999999999999999999999999999999998
Q ss_pred CCCCC
Q 018875 185 PKKSS 189 (349)
Q Consensus 185 ~~~~~ 189 (349)
.....
T Consensus 83 ~~~~~ 87 (111)
T 1whx_A 83 IGVFG 87 (111)
T ss_dssp TTTTC
T ss_pred CCccC
Confidence 75443
No 278
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=117.24 Aligned_cols=79 Identities=23% Similarity=0.550 Sum_probs=70.4
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
...+.++|||+|||+++|+++|+++|++||+|++|.|+ ++||||+|.+.++|++|++.++ .++++.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999999999999999998 3799999999999999998554 7999999999
Q ss_pred ecCCCCCCC
Q 018875 92 RTIPKGSGQ 100 (349)
Q Consensus 92 ~~~~~~~~~ 100 (349)
++.++....
T Consensus 76 ~a~~~~~~~ 84 (90)
T 2dnq_A 76 ASKNKSKAS 84 (90)
T ss_dssp CSSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998765543
No 279
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=6.2e-17 Score=122.68 Aligned_cols=83 Identities=23% Similarity=0.429 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELK----NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~----~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i 178 (349)
..+.++|||.|||+++++++|+ ++|++||.|..|.|+. ++++++||||+|.+.++|++|++.|++..|.++.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999 9999999999999874 46678999999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q 018875 179 EIKKAEPKKS 188 (349)
Q Consensus 179 ~v~~a~~~~~ 188 (349)
+|.+++++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999988653
No 280
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=4.1e-17 Score=129.35 Aligned_cols=81 Identities=22% Similarity=0.382 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceE--EEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL--EHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~--~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
..+..+|||.|||+++|+++|+++|++| .|+ .|.|+.++. ++++|||||+|+++++|++||++ ++..|.++.|+|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3467899999999999999999999999 666 899999876 99999999999999999999986 669999999999
Q ss_pred EeCCCC
Q 018875 181 KKAEPK 186 (349)
Q Consensus 181 ~~a~~~ 186 (349)
..+.++
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 888654
No 281
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=2.2e-16 Score=137.35 Aligned_cols=85 Identities=26% Similarity=0.403 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.|+...+.++.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 018875 183 AEPKK 187 (349)
Q Consensus 183 a~~~~ 187 (349)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87653
No 282
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=4.5e-17 Score=124.68 Aligned_cols=83 Identities=34% Similarity=0.651 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
...++|||.|||+++|+++|+++|++||.|..|.|+.++ ++++++||||+|++.++|++||+ ++..|+++.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 356899999999999999999999999999999999997 89999999999999999999998 889999999999998
Q ss_pred CCCCCC
Q 018875 184 EPKKSS 189 (349)
Q Consensus 184 ~~~~~~ 189 (349)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 866543
No 283
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=122.99 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=72.3
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc-----CC
Q 018875 103 DFKTKKIFV--GGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM-----AG 175 (349)
Q Consensus 103 ~~~~~~l~V--~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~-----~g 175 (349)
..++++||| .||++++|+++|+++|++||+|++|.|+.+ ++||||+|+++++|++|+++||+.+| .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 346789999 669999999999999999999999988643 67999999999999999999999988 68
Q ss_pred eEEEEEeCCCCCCCC
Q 018875 176 TQVEIKKAEPKKSSN 190 (349)
Q Consensus 176 ~~i~v~~a~~~~~~~ 190 (349)
++|.|.+++......
T Consensus 96 ~~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 96 ITLYLNFVEKVQWSG 110 (114)
T ss_dssp EECEEEEESCCCCSS
T ss_pred cEEEEEecccCcccC
Confidence 999999998665443
No 284
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=3.1e-17 Score=132.49 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=71.1
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEI 90 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v 90 (349)
.......++|||+|||+++|+++|+++|++|+ |++|.|+.++. ++++|||||+|+++++|++||+ +...|.++.|+|
T Consensus 40 ~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 40 TVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIEL 117 (139)
T ss_dssp -----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEE
Confidence 34556778999999999999999999999999 67999999984 9999999999999999999996 334899999999
Q ss_pred eecCCCC
Q 018875 91 KRTIPKG 97 (349)
Q Consensus 91 ~~~~~~~ 97 (349)
..+.+..
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 8877654
No 285
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.67 E-value=2.2e-16 Score=123.54 Aligned_cols=81 Identities=11% Similarity=0.321 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
.+.++|||.|||+++|+++|+++|++||.|..|.|+.+. .+++||||+|.+.++|++|++.||+..|.++.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 367899999999999999999999999999999999763 45899999999999999999999999999999999999
Q ss_pred CCCC
Q 018875 184 EPKK 187 (349)
Q Consensus 184 ~~~~ 187 (349)
.++.
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8643
No 286
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=9.9e-17 Score=126.78 Aligned_cols=79 Identities=18% Similarity=0.320 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCe----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCCcEEE
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDI----TDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVE 89 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i----~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~~i~ 89 (349)
..+.++|||+|||+++|+++|+++|++|++| ++|.|+.+. +++++|||||+|+++++|++||+. .+.|.++.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3567899999999999999999999999875 689999985 899999999999999999999984 4478888888
Q ss_pred EeecC
Q 018875 90 IKRTI 94 (349)
Q Consensus 90 v~~~~ 94 (349)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 87764
No 287
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=3.3e-16 Score=124.27 Aligned_cols=81 Identities=21% Similarity=0.568 Sum_probs=73.9
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~~ 95 (349)
+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.+.++|++||+ +...|.++.|.|+++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46799999999999999999999999999999999998899999999999999999999994 23389999999999875
Q ss_pred CC
Q 018875 96 KG 97 (349)
Q Consensus 96 ~~ 97 (349)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 288
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=1.7e-16 Score=118.08 Aligned_cols=76 Identities=13% Similarity=0.240 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
..++|||.|||+++++++|+++|++| .|..|.|. ++++||||+|+++++|++|++.||+..+.+++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 56899999999999999999999999 99999884 578899999999999999999999999999999999997
Q ss_pred CCC
Q 018875 185 PKK 187 (349)
Q Consensus 185 ~~~ 187 (349)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 289
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=3.8e-17 Score=122.08 Aligned_cols=79 Identities=27% Similarity=0.548 Sum_probs=70.3
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeecCCC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPK 96 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~~~~ 96 (349)
++|||+|||.++|+++|+++|++||+|+++.|+.++.++++++||||+|.+.+ |++|++.++ .+.++.|.|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999988999999999999999 999999654 899999999998765
Q ss_pred CC
Q 018875 97 GS 98 (349)
Q Consensus 97 ~~ 98 (349)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 290
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.4e-16 Score=116.89 Aligned_cols=83 Identities=13% Similarity=0.321 Sum_probs=71.8
Q ss_pred CCCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--cc
Q 018875 8 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKY--GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--II 83 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~--G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~ 83 (349)
+........+.++|||+|||+++|+++|+++|++| +.|.+|.++ ++||||+|.+.++|++|++.++ .|
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 5 SSGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp CCCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred ccccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 44455566778999999999999999999999999 889988775 3699999999999999999554 89
Q ss_pred CCcEEEEeecCCCCC
Q 018875 84 NGKQVEIKRTIPKGS 98 (349)
Q Consensus 84 ~g~~i~v~~~~~~~~ 98 (349)
.++.|.|+++.++..
T Consensus 77 ~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 77 DGSPIEVTLAKPVDK 91 (99)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999987654
No 291
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=5.4e-16 Score=118.87 Aligned_cols=80 Identities=20% Similarity=0.385 Sum_probs=70.4
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
....+.++|||+|||+++|+++|+++|++||+|++|.|++ +||||+|.++++|++||+.++ .|+++.|.|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 3445678999999999999999999999999999999884 499999999999999999544 899999999
Q ss_pred eecCCCCCCC
Q 018875 91 KRTIPKGSGQ 100 (349)
Q Consensus 91 ~~~~~~~~~~ 100 (349)
+++.++....
T Consensus 78 ~~a~~~~~~~ 87 (103)
T 2dgu_A 78 VFAKPPDQKR 87 (103)
T ss_dssp EECCCCCCCC
T ss_pred EEcCCCcccc
Confidence 9998765544
No 292
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=8.2e-17 Score=124.43 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=73.5
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGD---ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQ 87 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~---i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~ 87 (349)
..+....++|||+|||+++|+++|+++|++|+. |.+|.|+.++. ++++|||||+|.+.++|++||+ +...+.++.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 345567889999999999999999999999988 89999999986 9999999999999999999999 334788899
Q ss_pred EEEeecCC
Q 018875 88 VEIKRTIP 95 (349)
Q Consensus 88 i~v~~~~~ 95 (349)
|.|.++.+
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 98887754
No 293
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=5.1e-16 Score=132.81 Aligned_cols=116 Identities=22% Similarity=0.378 Sum_probs=90.1
Q ss_pred CHHHHHHHHHcc--C--ccCCcEEEEeecCCCCCCCC-----CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEE
Q 018875 69 DPSVVDKVIEDT--H--IINGKQVEIKRTIPKGSGQS-----KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQII 139 (349)
Q Consensus 69 ~~~~a~~al~~~--~--~~~g~~i~v~~~~~~~~~~~-----~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~ 139 (349)
+.+.+..|++.. . .+......|........... ...+.++|||.|||+++|+++|+++|++||.|..|+|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667777888754 2 33444445554422111111 12345899999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCC
Q 018875 140 RDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 186 (349)
Q Consensus 140 ~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~ 186 (349)
.+. +++++|||||+|+++++|++||+.++ ..|.++.|.|.++..-
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 985 58899999999999999999998765 5899999999988764
No 294
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.7e-16 Score=114.78 Aligned_cols=77 Identities=22% Similarity=0.539 Sum_probs=68.6
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc-C--ccCCcE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-H--IINGKQ 87 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~-~--~~~g~~ 87 (349)
.+.++.+.++|||+|||+++|+++|+++|++||+|+++.|+++ ++||||+|.+.++|++|++.+ + .+.++.
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3444567789999999999999999999999999999999975 489999999999999999965 3 789999
Q ss_pred EEEeec
Q 018875 88 VEIKRT 93 (349)
Q Consensus 88 i~v~~~ 93 (349)
|.|+++
T Consensus 79 l~v~~a 84 (85)
T 2ytc_A 79 LNVKWG 84 (85)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 999886
No 295
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=3.8e-16 Score=124.16 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=71.3
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFN----KHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~----~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
.+..+.++|||+|||+++++++|+ ++|++||+|++|.++. +++++|||||+|.+.++|++|++.++ .|.++
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 445567899999999999999876 6899999999988764 56789999999999999999999655 88999
Q ss_pred EEEEeecCCCC
Q 018875 87 QVEIKRTIPKG 97 (349)
Q Consensus 87 ~i~v~~~~~~~ 97 (349)
+|.|.++..+.
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999987653
No 296
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=114.61 Aligned_cols=80 Identities=16% Similarity=0.367 Sum_probs=70.7
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
.....+.++|||+|||+++|+++|+++|++||+|++|.|++ +||||+|.+.++|++|++.++ .+.++.|.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34566789999999999999999999999999999999985 399999999999999998544 89999999
Q ss_pred EeecCCCCCC
Q 018875 90 IKRTIPKGSG 99 (349)
Q Consensus 90 v~~~~~~~~~ 99 (349)
|+++.++...
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 297
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=7.2e-16 Score=128.02 Aligned_cols=83 Identities=19% Similarity=0.472 Sum_probs=79.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCC
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP 185 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~ 185 (349)
+++|||.|||+++|+++|+++|++||.|..|.|+.++.++++++||||+|.++++|++|++.|++..+.++.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CCC
Q 018875 186 KKS 188 (349)
Q Consensus 186 ~~~ 188 (349)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 643
No 298
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=117.58 Aligned_cols=81 Identities=30% Similarity=0.545 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEEeecC
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTI 94 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~ 94 (349)
...+++|||+|||+++|+++|+++|++||+|++|.|+.+ +++||||+|.+.++|++|+.....+.++.|.|.++.
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAE 76 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecC
Confidence 346789999999999999999999999999999999875 679999999999999988776557799999999988
Q ss_pred CCCCCC
Q 018875 95 PKGSGQ 100 (349)
Q Consensus 95 ~~~~~~ 100 (349)
++....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 765543
No 299
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2e-16 Score=117.70 Aligned_cols=78 Identities=35% Similarity=0.655 Sum_probs=68.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
++++|||.|||+++|+++|+++|++||.|+.|.|+.+ +++||||+|+++++|++|+.. ...+.++.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 5789999999999999999999999999999999865 688999999999999876442 456799999999998
Q ss_pred CCCCC
Q 018875 185 PKKSS 189 (349)
Q Consensus 185 ~~~~~ 189 (349)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 300
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=6.1e-16 Score=128.73 Aligned_cols=84 Identities=25% Similarity=0.398 Sum_probs=79.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
+.++|||.|||+++|+++|+++|++||+|.+|.|+.++.++++++||||+|.++++|++|++.|++..+.+++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 018875 185 PKKS 188 (349)
Q Consensus 185 ~~~~ 188 (349)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 301
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=4.8e-16 Score=117.53 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=71.4
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
......+.++|||+|||+++|+++|+++|++|++|..+ ..++++++||||+|.+.++|++|++.++ .+.++.|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34455678999999999999999999999999887655 2367899999999999999999999665 8999999
Q ss_pred EEeecCCCCC
Q 018875 89 EIKRTIPKGS 98 (349)
Q Consensus 89 ~v~~~~~~~~ 98 (349)
.|+++.++..
T Consensus 84 ~v~~a~~~~~ 93 (96)
T 1fjc_A 84 SLYYTGEKGG 93 (96)
T ss_dssp EEEECSSSCC
T ss_pred EEEEcCCCCC
Confidence 9999876543
No 302
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=3.7e-16 Score=116.54 Aligned_cols=80 Identities=31% Similarity=0.606 Sum_probs=63.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEE
Q 018875 102 KDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK 181 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~ 181 (349)
...+..+|||.|||+++|+++|+++|++||.|++|.|+.+ ++|||||+|+++++|+++.. ....+.++.|.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG--EDLIIKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT--CEEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC--CCcccCCEEEEEE
Confidence 3447789999999999999999999999999999999874 78999999999999985432 2445679999999
Q ss_pred eCCCCCC
Q 018875 182 KAEPKKS 188 (349)
Q Consensus 182 ~a~~~~~ 188 (349)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9987653
No 303
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=5.6e-16 Score=119.89 Aligned_cols=79 Identities=20% Similarity=0.457 Sum_probs=68.7
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQV 88 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i 88 (349)
....+.+.++|||+|||+++|+++|+++|++||+|++|.|+ ++||||+|.+.++|++|++.+ ..+.++.|
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34456788999999999999999999999999999999998 489999999999999999854 48899999
Q ss_pred EEeecCCCC
Q 018875 89 EIKRTIPKG 97 (349)
Q Consensus 89 ~v~~~~~~~ 97 (349)
.|+++.+..
T Consensus 96 ~V~~a~~~~ 104 (108)
T 2jvo_A 96 EVVYSKLPA 104 (108)
T ss_dssp EEESCSCCC
T ss_pred EEEEecCCC
Confidence 999987654
No 304
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=7.2e-16 Score=122.20 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccE-EEEEecCHHHHHHHHHhCCCcccCC--eEEEEE
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF-GFVIFDSEEVVDEMLSKGNMIDMAG--TQVEIK 181 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~-afV~f~~~~~a~~Ai~~l~~~~~~g--~~i~v~ 181 (349)
+...|||.||++.+|+++|+++|++||.|.+|.|+.. .+++ |||+|++.++|++|++.||+.+|.+ +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4557889999999999999999999999999998864 2567 9999999999999999999999998 999999
Q ss_pred eCCCCCC
Q 018875 182 KAEPKKS 188 (349)
Q Consensus 182 ~a~~~~~ 188 (349)
+++++..
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 9998643
No 305
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=1e-15 Score=118.81 Aligned_cols=77 Identities=17% Similarity=0.437 Sum_probs=67.7
Q ss_pred CCCCCceEEEcCCCcC-CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEE
Q 018875 14 DGASPGKIFIGGLPKD-TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEI 90 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~-~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v 90 (349)
.....++|||+|||++ +|+++|+++|++||+|++|.| +++||||+|.+.++|++|++.+ ..|.++.|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999998 3589999999999999999854 4899999999
Q ss_pred eecCCCCC
Q 018875 91 KRTIPKGS 98 (349)
Q Consensus 91 ~~~~~~~~ 98 (349)
+++.+...
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99875443
No 306
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.3e-16 Score=116.84 Aligned_cols=82 Identities=11% Similarity=0.192 Sum_probs=70.6
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDS-VIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~-~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
.......++|||+|||+++|+++|+++|++||+|+++ .|+.++.+ +.|||+|.+.++|++|++.++ .|.++.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 9 VPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3344567899999999999999999999999999999 58877644 339999999999999998544 8999999
Q ss_pred EEeecCCCC
Q 018875 89 EIKRTIPKG 97 (349)
Q Consensus 89 ~v~~~~~~~ 97 (349)
.|+++.++.
T Consensus 85 ~V~~a~~~~ 93 (96)
T 2e44_A 85 KVAYIPDEM 93 (96)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCccc
Confidence 999998763
No 307
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=6.7e-16 Score=130.17 Aligned_cols=82 Identities=15% Similarity=0.325 Sum_probs=75.4
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
.....++|||.|||+++|+++|+++|++||+|++|.|+.+. ++++++||||+|.+.++|++||+.++ .|.++.|.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999554 8999999999
Q ss_pred ecCCC
Q 018875 92 RTIPK 96 (349)
Q Consensus 92 ~~~~~ 96 (349)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98754
No 308
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.64 E-value=9.4e-16 Score=130.98 Aligned_cols=87 Identities=30% Similarity=0.608 Sum_probs=78.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 101 SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 101 ~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
....+.++|||.|||+++|+++|+++|++||.|.+|.|+.++.++++++||||+|.++++|++||+. ++..|.++.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3445778999999999999999999999999999999999999999999999999999999999987 889999999999
Q ss_pred EeCCCCCC
Q 018875 181 KKAEPKKS 188 (349)
Q Consensus 181 ~~a~~~~~ 188 (349)
.++.++..
T Consensus 87 ~~~~~~~~ 94 (196)
T 1l3k_A 87 KRAVSRED 94 (196)
T ss_dssp EECCC---
T ss_pred ecccCccc
Confidence 99887643
No 309
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.2e-16 Score=121.56 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=72.3
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC----HHH----HHHHHH--hCCCcc
Q 018875 107 KKIFVGGI----PSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS----EEV----VDEMLS--KGNMID 172 (349)
Q Consensus 107 ~~l~V~nL----~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~----~~~----a~~Ai~--~l~~~~ 172 (349)
++|||.|| |+++++++|+++|++||+|.+|.++.|+.|++++|||||+|.+ +++ |.+|++ +|+++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 899988 789999
Q ss_pred cCCeEEEEEeCCC
Q 018875 173 MAGTQVEIKKAEP 185 (349)
Q Consensus 173 ~~g~~i~v~~a~~ 185 (349)
|++++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 310
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=114.25 Aligned_cols=79 Identities=18% Similarity=0.397 Sum_probs=69.8
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
....+.++|||+|||+++|+++|+++|++||+|++|.|+++ ||||+|.+.++|++|++.++ .+.++.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567789999999999999999999999999999999853 89999999999999999544 899999999
Q ss_pred eecCCCCCC
Q 018875 91 KRTIPKGSG 99 (349)
Q Consensus 91 ~~~~~~~~~ 99 (349)
+++.+....
T Consensus 76 ~~a~~~~~~ 84 (90)
T 2dnp_A 76 ELSTKGQKK 84 (90)
T ss_dssp EESCCCCCC
T ss_pred EECCCCCCC
Confidence 999876443
No 311
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=119.21 Aligned_cols=78 Identities=23% Similarity=0.510 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCC---CCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHET---NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~---g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
...++|||.|||+++|+++|+++|++||.|. +.++.+..+ +++++||||+|+++++|++||++|+ .++++.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3578999999999999999999999999999 888888777 6999999999999999999999983 356666655
Q ss_pred EeCC
Q 018875 181 KKAE 184 (349)
Q Consensus 181 ~~a~ 184 (349)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 312
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=114.27 Aligned_cols=79 Identities=16% Similarity=0.400 Sum_probs=67.8
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
....++|||+|||+++|+++|+++|++||+|.+| +.++.+++ ||||+|.++++|++||+ ++ .|.++.|.|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 4566899999999999999999999999999987 55554554 99999999999999999 55 88999999998
Q ss_pred cCCCCCC
Q 018875 93 TIPKGSG 99 (349)
Q Consensus 93 ~~~~~~~ 99 (349)
+.++...
T Consensus 79 a~~~~~~ 85 (94)
T 2e5g_A 79 REQKEFQ 85 (94)
T ss_dssp SCCSCCC
T ss_pred CCcCCCC
Confidence 8765443
No 313
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=114.86 Aligned_cols=71 Identities=20% Similarity=0.453 Sum_probs=63.0
Q ss_pred CceEEEcCCCcCC------cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc-EE
Q 018875 18 PGKIFIGGLPKDT------TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK-QV 88 (349)
Q Consensus 18 ~~~lfV~nLp~~~------te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~-~i 88 (349)
+++|||+|||+++ |+++|+++|++||+|.++.|+ +.+++++|||||+|.+.++|++|++.++ .+.++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999988 3478999999999999999999999655 77777 66
Q ss_pred EE
Q 018875 89 EI 90 (349)
Q Consensus 89 ~v 90 (349)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 55
No 314
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.6e-16 Score=118.75 Aligned_cols=80 Identities=15% Similarity=0.351 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i~v~ 91 (349)
.....++|||+|||+++|+++|+++|++||+|++|.|+.+ ++||||+|.+.++|++|++.+ ..|.++.|.|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567889999999999999999999999999999999987 489999999999999999854 48999999999
Q ss_pred ecCCCCCC
Q 018875 92 RTIPKGSG 99 (349)
Q Consensus 92 ~~~~~~~~ 99 (349)
++.+....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99876543
No 315
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-17 Score=129.87 Aligned_cols=86 Identities=21% Similarity=0.364 Sum_probs=77.7
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--cc
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITD--------SVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--II 83 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~--------~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~ 83 (349)
+..+.++|||+|||+++|+++|+++|++|++|.+ |.|+.++.++++++||||+|.+.++|++|++.++ .|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567889999999999999999999999999998 8999998889999999999999999999999554 88
Q ss_pred CCcEEEEeecCCCCCC
Q 018875 84 NGKQVEIKRTIPKGSG 99 (349)
Q Consensus 84 ~g~~i~v~~~~~~~~~ 99 (349)
.++.|.|+++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999998876543
No 316
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=4.9e-16 Score=120.50 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=68.7
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYG-DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G-~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
.+...++|||+|||+++|+++|+++|++|| +|..+.|+.. +++|||||+|++.++|++||+.++ .|.++.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 8999888643 478999999999999999998665 899999999
Q ss_pred eecCCC
Q 018875 91 KRTIPK 96 (349)
Q Consensus 91 ~~~~~~ 96 (349)
+++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998643
No 317
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.9e-15 Score=119.24 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=68.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccE-EEEEecCHHHHHHHHHhCCCcccCC--eEEEEEeC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGF-GFVIFDSEEVVDEMLSKGNMIDMAG--TQVEIKKA 183 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~-afV~f~~~~~a~~Ai~~l~~~~~~g--~~i~v~~a 183 (349)
..|||.||++.+|+++|+++|++||.|++|.|+.. .+| |||+|++.++|++|++.||+.+|.+ +.|+|+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34679999999999999999999999999999753 266 9999999999999999999999988 69999999
Q ss_pred CCCC
Q 018875 184 EPKK 187 (349)
Q Consensus 184 ~~~~ 187 (349)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8875
No 318
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=111.02 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=67.5
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHhhcc-CceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEE
Q 018875 105 KTKK-IFVGGIPSSVSEDE----LKNFFSKY-GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (349)
Q Consensus 105 ~~~~-l~V~nL~~~~t~e~----l~~~F~~~-G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i 178 (349)
++.| |||.|||+.+++++ |+++|++| |.|.+| ++ |+|||+|++.++|++|+++|++.+|.+++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4556 99999999999998 45899999 599988 22 899999999999999999999999999999
Q ss_pred EEEeCCCCCCCC
Q 018875 179 EIKKAEPKKSSN 190 (349)
Q Consensus 179 ~v~~a~~~~~~~ 190 (349)
+|.+|+.+....
T Consensus 77 ~v~~A~~~sd~~ 88 (96)
T 2diu_A 77 IVSFTPKNRELC 88 (96)
T ss_dssp EEESSCCSCCCC
T ss_pred EEEecCCCccee
Confidence 999999886544
No 319
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.4e-16 Score=117.98 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=67.5
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
.+...++|||+|||.++|+++|+++|++||+|+++.|++ +++||||+|.+.++|++|++.++ .+.++.|.|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344578999999999999999999999999999999983 45899999999999999998544 8899999999
Q ss_pred ecCC
Q 018875 92 RTIP 95 (349)
Q Consensus 92 ~~~~ 95 (349)
++.+
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8865
No 320
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=1.6e-16 Score=129.44 Aligned_cols=87 Identities=21% Similarity=0.326 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEE-----EecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI-----IRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i-----~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~ 177 (349)
..+.++|||.|||+++|+++|+++|++||.|..|.+ +....++++++||||+|.+.++|++||+.||+..|.++.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 346789999999999999999999999998876410 111246788999999999999999999999999999999
Q ss_pred EEEEeCCCCCCC
Q 018875 178 VEIKKAEPKKSS 189 (349)
Q Consensus 178 i~v~~a~~~~~~ 189 (349)
|.|.++++....
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876543
No 321
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.1e-15 Score=112.10 Aligned_cols=83 Identities=17% Similarity=0.306 Sum_probs=71.1
Q ss_pred CCCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 9 NPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 9 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
.+......+.++|||+|| ++|+++|+++|++||+|++|.|. ++++||||+|.+.++|++||+.++ .|.++
T Consensus 6 ~~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 6 SGERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp SSCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 344555667899999996 89999999999999999999985 356899999999999999998655 88999
Q ss_pred EEEEeecCCCCCC
Q 018875 87 QVEIKRTIPKGSG 99 (349)
Q Consensus 87 ~i~v~~~~~~~~~ 99 (349)
.|.|+++.++...
T Consensus 78 ~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 78 QLKVNIARKQPML 90 (97)
T ss_dssp EEEEECCSSCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 322
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=1.4e-15 Score=145.79 Aligned_cols=85 Identities=22% Similarity=0.461 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~ 91 (349)
...+.++|||+|||++||+++|+++|++||+|+.|.|+.++.++++++||||+|.+.++|++||+.++ .|.++.|.|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999998655 8999999999
Q ss_pred ecCCCCC
Q 018875 92 RTIPKGS 98 (349)
Q Consensus 92 ~~~~~~~ 98 (349)
++.+...
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9876543
No 323
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=2.6e-15 Score=113.76 Aligned_cols=77 Identities=26% Similarity=0.504 Sum_probs=67.0
Q ss_pred CCCCCCCceEEEcCCCc-CCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 12 TGDGASPGKIFIGGLPK-DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
.....+.++|||+|||+ ++|+++|+++|++||+|.++.|. ++||||+|.+.++|++|++.++ .+.++.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556789999999998 99999999999999999999984 5899999999999999999554 7889999
Q ss_pred EEeecCCC
Q 018875 89 EIKRTIPK 96 (349)
Q Consensus 89 ~v~~~~~~ 96 (349)
.|+++..+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998754
No 324
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.2e-15 Score=115.47 Aligned_cols=79 Identities=25% Similarity=0.469 Sum_probs=66.9
Q ss_pred CCCCCCceEEEcCCCc-CCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 13 GDGASPGKIFIGGLPK-DTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~-~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
.+..+.++|||+|||+ ++|+++|+++|++||+|++|.|. ++||||+|.+.++|++|++.++ .+.++.|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3456788999999998 99999999999999999999985 4899999999999999999544 78899999
Q ss_pred EeecCCCCCC
Q 018875 90 IKRTIPKGSG 99 (349)
Q Consensus 90 v~~~~~~~~~ 99 (349)
|+++.+....
T Consensus 77 V~~a~~~~~~ 86 (96)
T 2kvi_A 77 LEVSSSNARP 86 (96)
T ss_dssp EEEEECCCC-
T ss_pred EEEcCcCCCC
Confidence 9998765443
No 325
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.60 E-value=6.5e-16 Score=116.98 Aligned_cols=81 Identities=16% Similarity=0.333 Sum_probs=70.8
Q ss_pred CCCCCceEEEcCCCcCCcHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFN----KHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQ 87 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~----~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~ 87 (349)
+..+.++|||+|||+++|+++|+ ++|++||+|.+|.|+. ++++++||||+|.+.++|++|++.+ ..+.++.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45577899999999999999999 9999999999998874 4567899999999999999999854 4889999
Q ss_pred EEEeecCCCC
Q 018875 88 VEIKRTIPKG 97 (349)
Q Consensus 88 i~v~~~~~~~ 97 (349)
|.|+++.+..
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999988754
No 326
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=4.6e-15 Score=113.94 Aligned_cols=83 Identities=20% Similarity=0.097 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhccCceEEEEEEecCCC-CCcccEEEEEecCHHHHHHHHHhCCCcccCCeE
Q 018875 104 FKTKKIFVGGIPS-----SVSEDELKNFFSKYGKVLEHQIIRDHET-NRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQ 177 (349)
Q Consensus 104 ~~~~~l~V~nL~~-----~~t~e~l~~~F~~~G~v~~v~i~~~~~~-g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~ 177 (349)
.++++|+|.||.. +.++++|+++|++||.|++|.|+.++.+ ++++|+|||+|+++++|++|++.||+..+.+++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3678999999963 2378999999999999999999998654 688999999999999999999999999999999
Q ss_pred EEEEeCCCC
Q 018875 178 VEIKKAEPK 186 (349)
Q Consensus 178 i~v~~a~~~ 186 (349)
|.|.++.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998753
No 327
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=2.5e-15 Score=123.27 Aligned_cols=81 Identities=20% Similarity=0.504 Sum_probs=72.3
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQV 88 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i 88 (349)
........++|||+|||+++|+++|+++|++||+|++|.|+.+ +++||||+|.+.++|++|++.+ ..|.+++|
T Consensus 66 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 66 HRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp CSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3445567899999999999999999999999999999999886 4699999999999999999854 48899999
Q ss_pred EEeecCCC
Q 018875 89 EIKRTIPK 96 (349)
Q Consensus 89 ~v~~~~~~ 96 (349)
.|+++.++
T Consensus 141 ~v~~a~~~ 148 (150)
T 2i2y_A 141 RVELSNGE 148 (150)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99998765
No 328
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=1.9e-15 Score=111.98 Aligned_cols=71 Identities=28% Similarity=0.585 Sum_probs=66.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKY----G-------KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~----G-------~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
+.++|||.|||+++|+++|+++|++| | .|.++.++.+ ++||||+|+++++|++|+ .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 57899999999999999999999999 8 8999998765 679999999999999999 9999999
Q ss_pred CCeEEEEEe
Q 018875 174 AGTQVEIKK 182 (349)
Q Consensus 174 ~g~~i~v~~ 182 (349)
.++.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 329
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=112.67 Aligned_cols=80 Identities=23% Similarity=0.433 Sum_probs=67.6
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc---CccCCcEEE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGD-ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT---HIINGKQVE 89 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~-i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~---~~~~g~~i~ 89 (349)
...+.++|||+|||+++|+++|+++|++|++ |..+.++ +++||||+|.+.++|++|++.+ ..+.++.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 6655553 3589999999999999999844 569999999
Q ss_pred EeecCCCCCCC
Q 018875 90 IKRTIPKGSGQ 100 (349)
Q Consensus 90 v~~~~~~~~~~ 100 (349)
|+++.++....
T Consensus 77 v~~a~~~~~~~ 87 (93)
T 2cqh_A 77 VDYSVSKKLRS 87 (93)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCccccC
Confidence 99998765543
No 330
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.9e-15 Score=121.90 Aligned_cols=83 Identities=19% Similarity=0.435 Sum_probs=76.2
Q ss_pred CCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEE
Q 018875 12 TGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVE 89 (349)
Q Consensus 12 ~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~ 89 (349)
.....+.++|||.|||+++|+++|+++|++||+|.++.++.+..++++++||||+|.+.++|++|++.++ .+.++.|.
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 3455678899999999999999999999999999999999998899999999999999999999999544 89999999
Q ss_pred EeecC
Q 018875 90 IKRTI 94 (349)
Q Consensus 90 v~~~~ 94 (349)
|.++.
T Consensus 161 v~~a~ 165 (166)
T 3md3_A 161 INWAA 165 (166)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99875
No 331
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=3.7e-15 Score=110.77 Aligned_cols=74 Identities=16% Similarity=0.321 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~ 93 (349)
.+.++|||+|||+++|+++|+++|++| +|+++.|. ++++||||+|.++++|++|++.++ .+.++.|.|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999885 567999999999999999999655 899999999998
Q ss_pred CCC
Q 018875 94 IPK 96 (349)
Q Consensus 94 ~~~ 96 (349)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 332
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=2.7e-15 Score=118.45 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEe
Q 018875 103 DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKK 182 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~ 182 (349)
..+.++|||.|| ++|+++|+++|++||.|..|.|. ++++||||+|++.++|++||+.|++..|.++.|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999996 69999999999999999999986 4678999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 018875 183 AEPKKSS 189 (349)
Q Consensus 183 a~~~~~~ 189 (349)
+.++...
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9886543
No 333
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-15 Score=118.17 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEeec
Q 018875 16 ASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRT 93 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~~ 93 (349)
.+.++|||+|||+++|+++|+++|++||+|++|.|+. +++||||+|.+.++|++|++.++ .+.++.|.|+++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3568999999999999999999999999999998875 44899999999999999999654 889999999998
Q ss_pred CCC
Q 018875 94 IPK 96 (349)
Q Consensus 94 ~~~ 96 (349)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 653
No 334
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=1.5e-15 Score=133.15 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=77.4
Q ss_pred cCccCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCC---------CHHHHHHHhhccCceEEEEEEecCCCCCcccE
Q 018875 80 THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSV---------SEDELKNFFSKYGKVLEHQIIRDHETNRSRGF 150 (349)
Q Consensus 80 ~~~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~---------t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~ 150 (349)
...+.++....................++|||.||+..+ ++++|+++|++||+|++|.|+.+ ++|
T Consensus 108 ~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~ 181 (240)
T 3u1l_A 108 VLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNC 181 (240)
T ss_dssp SBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTE
T ss_pred CcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCE
Confidence 345556643332222222222345578899999999998 79999999999999999999853 789
Q ss_pred EEEEecCHHHHHHHHHhCCCccc------------CCeEEEEEeCCCCC
Q 018875 151 GFVIFDSEEVVDEMLSKGNMIDM------------AGTQVEIKKAEPKK 187 (349)
Q Consensus 151 afV~f~~~~~a~~Ai~~l~~~~~------------~g~~i~v~~a~~~~ 187 (349)
|||+|.+.++|++|+++|++..| .++.|.|.||....
T Consensus 182 AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 182 GFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp EEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 99999999999999999999999 89999999998754
No 335
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=1.7e-15 Score=118.49 Aligned_cols=76 Identities=16% Similarity=0.418 Sum_probs=62.7
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcE-----
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQ----- 87 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~----- 87 (349)
....++|||.|||+++|+++|+++|++||+|++|.|+.+ +||||+|+++++|++||+.++ .|+++.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 345789999999999999999999999999999999876 799999999999999999655 788887
Q ss_pred EEEeecCCCC
Q 018875 88 VEIKRTIPKG 97 (349)
Q Consensus 88 i~v~~~~~~~ 97 (349)
|.|+.+.+..
T Consensus 86 i~v~~~~~~~ 95 (115)
T 3beg_B 86 IRVKVDGPRS 95 (115)
T ss_dssp CEEEECC---
T ss_pred EEeccCCCCC
Confidence 7777665543
No 336
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=9.4e-15 Score=120.14 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=70.2
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCC--cEEE
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IING--KQVE 89 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g--~~i~ 89 (349)
.++...+|||+||++++|+++|+++|++||+|++|+|+.+. +++||||+|++.++|++|++.++ .|.+ +.|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 34556679999999999999999999999999999987543 56899999999999999999766 6754 9999
Q ss_pred EeecCCCCCC
Q 018875 90 IKRTIPKGSG 99 (349)
Q Consensus 90 v~~~~~~~~~ 99 (349)
|+++.++...
T Consensus 118 V~~Ak~~~l~ 127 (164)
T 1sjr_A 118 IDFSKLTSLN 127 (164)
T ss_dssp EEECSSSSCC
T ss_pred EEEecCCccc
Confidence 9999876543
No 337
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=3.8e-15 Score=129.20 Aligned_cols=83 Identities=20% Similarity=0.434 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
+.++|||.|||+++|+++|+++|++||.|.+|.|+.+..++++++||||+|.++++|++||+.|++..|.++.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999998877
Q ss_pred CCC
Q 018875 185 PKK 187 (349)
Q Consensus 185 ~~~ 187 (349)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 653
No 338
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=4.9e-15 Score=127.95 Aligned_cols=78 Identities=21% Similarity=0.298 Sum_probs=72.6
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 105 KTKKIFVGGIP-SSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 105 ~~~~l~V~nL~-~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
+.++|||+||| +++|+++|+++|++||.|.+|+|+++ .++||||+|+++++|++||+.||+..|.+++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 89999999999999999999999875 3689999999999999999999999999999999999
Q ss_pred CCCC
Q 018875 184 EPKK 187 (349)
Q Consensus 184 ~~~~ 187 (349)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 339
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=2.3e-14 Score=112.96 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=64.3
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHccC--ccCC--cEEEEee
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF-GFITYADPSVVDKVIEDTH--IING--KQVEIKR 92 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~-afVef~~~~~a~~al~~~~--~~~g--~~i~v~~ 92 (349)
...|||+|||+.+|+++|+++|++||+|++|+|+.. .|| |||+|.+.++|++|++.++ .|.+ ++|.|++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 344679999999999999999999999999999762 276 9999999999999999665 6766 6899999
Q ss_pred cCCCCC
Q 018875 93 TIPKGS 98 (349)
Q Consensus 93 ~~~~~~ 98 (349)
+.++..
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 887653
No 340
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=1.2e-14 Score=124.17 Aligned_cols=84 Identities=26% Similarity=0.473 Sum_probs=77.2
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
....++|||.|||+++|+++|+++|++||+|.++.|+.++.++++++||||+|.+.++|++|++.++ .+.++.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3677999999999999999999999999999999999998899999999999999999999999544 89999999999
Q ss_pred cCCCCC
Q 018875 93 TIPKGS 98 (349)
Q Consensus 93 ~~~~~~ 98 (349)
+.++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987543
No 341
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.6e-15 Score=114.40 Aligned_cols=77 Identities=9% Similarity=0.155 Sum_probs=64.3
Q ss_pred CCCCCCceEEE--cCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--cc-----
Q 018875 13 GDGASPGKIFI--GGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--II----- 83 (349)
Q Consensus 13 ~~~~~~~~lfV--~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~----- 83 (349)
....++++||| +||++++|+++|+++|++||+|++|.|+.+ ++||||+|+++++|++|++.++ .+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34456789999 779999999999999999999999888653 5899999999999999999665 44
Q ss_pred CCcEEEEeecCC
Q 018875 84 NGKQVEIKRTIP 95 (349)
Q Consensus 84 ~g~~i~v~~~~~ 95 (349)
.+++|.|.++..
T Consensus 94 ~g~~l~v~~a~~ 105 (114)
T 2cq2_A 94 QKITLYLNFVEK 105 (114)
T ss_dssp CEEECEEEEESC
T ss_pred CCcEEEEEeccc
Confidence 467777777654
No 342
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=124.08 Aligned_cols=85 Identities=19% Similarity=0.388 Sum_probs=70.6
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSV--I---MKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~--i---~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
...+.++|||+|||+++|+++|+++|++||.|.++. + +....++++++||||+|.+.++|++||+.++ .|.++
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 356778999999999999999999999999987741 1 1112367899999999999999999999554 89999
Q ss_pred EEEEeecCCCCC
Q 018875 87 QVEIKRTIPKGS 98 (349)
Q Consensus 87 ~i~v~~~~~~~~ 98 (349)
.|.|.++.+...
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999876543
No 343
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=1.4e-14 Score=114.84 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=68.9
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHccC--ccCC--cEEE
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGF-GFITYADPSVVDKVIEDTH--IING--KQVE 89 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~-afVef~~~~~a~~al~~~~--~~~g--~~i~ 89 (349)
++....|||+||++.+|+++|+++|++||+|++|+|+.+. ++| |||+|.+.++|++|++.++ .|.+ +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 3455677899999999999999999999999999988743 588 9999999999999999665 6766 8899
Q ss_pred EeecCCCCCCC
Q 018875 90 IKRTIPKGSGQ 100 (349)
Q Consensus 90 v~~~~~~~~~~ 100 (349)
|+++.+....-
T Consensus 100 I~~ak~~~l~v 110 (130)
T 3zzy_A 100 IDFSKLTSLNV 110 (130)
T ss_dssp EEECSCSSCCC
T ss_pred EEecCCCceeE
Confidence 99998765433
No 344
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.56 E-value=7.8e-15 Score=122.74 Aligned_cols=84 Identities=30% Similarity=0.552 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCC--CcccEEEEEecCHHHHHHHHHhCCCcccC---CeEEE
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETN--RSRGFGFVIFDSEEVVDEMLSKGNMIDMA---GTQVE 179 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g--~~~G~afV~f~~~~~a~~Ai~~l~~~~~~---g~~i~ 179 (349)
+.++|||.|||+++|+++|+++|++||+|.+|.|+.++.++ ++++||||+|.++++|++|++.|++..+. .+.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56799999999999999999999999999999999998876 89999999999999999999999998776 67888
Q ss_pred EEeCCCCCC
Q 018875 180 IKKAEPKKS 188 (349)
Q Consensus 180 v~~a~~~~~ 188 (349)
+.++.+...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888776543
No 345
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.4e-15 Score=115.30 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=66.8
Q ss_pred ceEEEcCC----CcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--cc--Cc
Q 018875 19 GKIFIGGL----PKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD----PSV----VDKVIE--DT--HI 82 (349)
Q Consensus 19 ~~lfV~nL----p~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~----~~~----a~~al~--~~--~~ 82 (349)
++|||+|| |+++++++|+++|++||+|.++.++.|+.|++++|||||+|.| +++ |.+|++ .+ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 778877 33 38
Q ss_pred cCCcEEEEeecC
Q 018875 83 INGKQVEIKRTI 94 (349)
Q Consensus 83 ~~g~~i~v~~~~ 94 (349)
|.++.|.|+...
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998654
No 346
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.55 E-value=1.6e-14 Score=120.67 Aligned_cols=80 Identities=26% Similarity=0.489 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v~~ 92 (349)
....++|||.|||+++|+++|+++|++||+|.++.|+.++.++++++||||+|.+.++|++|++.++ .+.++.|.|++
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3457899999999999999999999999999999999998899999999999999999999999544 89999999998
Q ss_pred cC
Q 018875 93 TI 94 (349)
Q Consensus 93 ~~ 94 (349)
+.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 347
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.5e-14 Score=109.36 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 102 KDFKTKKIFVGGIPSSVS-----------EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~~~t-----------~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
...++++|+|.||....+ +++|+++|++||.|++|.| .++ .+++||||+|+++++|++||+.||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445789999999954432 6899999999999999966 443 3789999999999999999999999
Q ss_pred cccCCeEEEEEeCCCCCC
Q 018875 171 IDMAGTQVEIKKAEPKKS 188 (349)
Q Consensus 171 ~~~~g~~i~v~~a~~~~~ 188 (349)
..|.+++|+|.++.++..
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999987654
No 348
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=7.6e-15 Score=122.02 Aligned_cols=80 Identities=40% Similarity=0.764 Sum_probs=74.1
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCcEEEEeecCC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIP 95 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~~i~v~~~~~ 95 (349)
+.++|||.|||+++|+++|+++|++||+|+++.|+.++.+++++|||||+|.+.++|++|++ +...+.+++|.|+++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 46789999999999999999999999999999999998889999999999999999999998 33389999999999986
Q ss_pred C
Q 018875 96 K 96 (349)
Q Consensus 96 ~ 96 (349)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 349
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=2.1e-14 Score=122.68 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=72.2
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc-CccCCcEEEEeecCC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIP 95 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~-~~~~g~~i~v~~~~~ 95 (349)
..++|||+|||+++|+++|+++|++||+|.+|.|+++. +++++|||||+|+++++|++|++.+ +.+.++.|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 35899999999999999999999999999999999987 6899999999999999999999843 489999999998765
Q ss_pred C
Q 018875 96 K 96 (349)
Q Consensus 96 ~ 96 (349)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=1.1e-14 Score=107.67 Aligned_cols=71 Identities=20% Similarity=0.451 Sum_probs=63.6
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKY----G-------DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-- 81 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~----G-------~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~-- 81 (349)
..+.++|||+|||+++|+++|+++|++| + +|.++.++++ ++||||+|.++++|++|+ .++
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3567899999999999999999999999 8 8999998865 489999999999999999 554
Q ss_pred ccCCcEEEEee
Q 018875 82 IINGKQVEIKR 92 (349)
Q Consensus 82 ~~~g~~i~v~~ 92 (349)
.+.++.|.|++
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 88999999875
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=1.9e-14 Score=113.55 Aligned_cols=80 Identities=18% Similarity=0.333 Sum_probs=67.6
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc--CccCCcEE
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT--HIINGKQV 88 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~--~~~~g~~i 88 (349)
......+.++|||+|| ++|+++|+++|++||+|++|.|+ ++++||||+|.+.++|++|++.+ ..+.++.|
T Consensus 32 ~~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 32 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp ---CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3344567899999996 79999999999999999999986 35689999999999999999854 48999999
Q ss_pred EEeecCCCCC
Q 018875 89 EIKRTIPKGS 98 (349)
Q Consensus 89 ~v~~~~~~~~ 98 (349)
.|.++.++..
T Consensus 104 ~V~~a~~~~~ 113 (121)
T 2bz2_A 104 KVNIARKQPM 113 (121)
T ss_dssp EEEECCSSCC
T ss_pred EEEEeCCCCC
Confidence 9999887643
No 352
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=3.7e-14 Score=128.33 Aligned_cols=82 Identities=23% Similarity=0.427 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEE
Q 018875 103 DFKTKKIFVGGIPSSVSEDELK----NFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~~t~e~l~----~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i 178 (349)
..++++|||.|||+++|+++|+ ++|++||.|++|.|++ ++++++||||+|.+.++|++||+.||+..|.++.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4578899999999999999977 8999999999999886 57789999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q 018875 179 EIKKAEPKK 187 (349)
Q Consensus 179 ~v~~a~~~~ 187 (349)
+|.+++.+.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 353
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=7.4e-14 Score=102.97 Aligned_cols=73 Identities=10% Similarity=0.191 Sum_probs=62.2
Q ss_pred CCce-EEEcCCCcCCcHHH----HHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 17 SPGK-IFIGGLPKDTTYAT----FNKHFGKY-GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 17 ~~~~-lfV~nLp~~~te~~----l~~~F~~~-G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
++.| |||.|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|+++++ .+.+++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3445 99999999999988 55899999 599988 22 899999999999999999655 8999999
Q ss_pred EEeecCCCCCC
Q 018875 89 EIKRTIPKGSG 99 (349)
Q Consensus 89 ~v~~~~~~~~~ 99 (349)
+|.++......
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999876543
No 354
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.50 E-value=5.9e-14 Score=123.27 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 102 KDFKTKKIFVGGIPS-SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 102 ~~~~~~~l~V~nL~~-~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
...+.++|||.|||+ ++|+++|+++|++||.|.+|.|+.++ ++||||+|.++++|++||+.|++..|.++.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345788999999999 99999999999999999999999874 679999999999999999999999999999999
Q ss_pred EeCCCCC
Q 018875 181 KKAEPKK 187 (349)
Q Consensus 181 ~~a~~~~ 187 (349)
.++.++.
T Consensus 105 ~~a~~~~ 111 (229)
T 2adc_A 105 TLSKHQN 111 (229)
T ss_dssp ECCSCCC
T ss_pred EEecCcc
Confidence 9998764
No 355
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=9.5e-14 Score=106.55 Aligned_cols=81 Identities=12% Similarity=0.125 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCc-----CCcHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 15 GASPGKIFIGGLPK-----DTTYATFNKHFGKYGDITDSVIMKDRYT-GQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 15 ~~~~~~lfV~nLp~-----~~te~~l~~~F~~~G~i~~~~i~~~~~~-g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
..++++|+|.||.. +.++++|+++|++||+|++|+|++++.+ ++++|||||+|.++++|++|++.++ .+.++
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999962 2478999999999999999999998654 6889999999999999999999665 89999
Q ss_pred EEEEeecCC
Q 018875 87 QVEIKRTIP 95 (349)
Q Consensus 87 ~i~v~~~~~ 95 (349)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998764
No 356
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=5e-14 Score=108.16 Aligned_cols=83 Identities=22% Similarity=0.218 Sum_probs=71.8
Q ss_pred CCCCeEEEcCC--CCCC--------CHHHHHHHhhccCceEEEEEEecCCC--CCcccEEEEEecCHHHHHHHHHhCCCc
Q 018875 104 FKTKKIFVGGI--PSSV--------SEDELKNFFSKYGKVLEHQIIRDHET--NRSRGFGFVIFDSEEVVDEMLSKGNMI 171 (349)
Q Consensus 104 ~~~~~l~V~nL--~~~~--------t~e~l~~~F~~~G~v~~v~i~~~~~~--g~~~G~afV~f~~~~~a~~Ai~~l~~~ 171 (349)
.++++|.|.|+ |..+ ++++|+++|++||.|++|.|++++.+ .+++|+|||+|+++++|++|+++||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36788999998 3333 34789999999999999999988755 468999999999999999999999999
Q ss_pred ccCCeEEEEEeCCCC
Q 018875 172 DMAGTQVEIKKAEPK 186 (349)
Q Consensus 172 ~~~g~~i~v~~a~~~ 186 (349)
.+.+++|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999987643
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.2e-13 Score=104.32 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=69.9
Q ss_pred CCCCCCCCceEEEcCCCcCC-----------cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 11 HTGDGASPGKIFIGGLPKDT-----------TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~-----------te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
....+.++++|+|.||.... ++++|+++|++||+|++|.| .++ .++|||||+|.+.++|++|++.
T Consensus 8 ~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 8 GPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHH
Confidence 34466789999999994433 26899999999999999965 544 3789999999999999999996
Q ss_pred cC--ccCCcEEEEeecCCCCCC
Q 018875 80 TH--IINGKQVEIKRTIPKGSG 99 (349)
Q Consensus 80 ~~--~~~g~~i~v~~~~~~~~~ 99 (349)
++ .+.+++|.|.++.++...
T Consensus 84 lng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 84 LDGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp STTCEETTEECEEEECCSCCCS
T ss_pred cCCCEECCcEEEEEEeCCCCCc
Confidence 65 889999999998876443
No 358
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1.1e-13 Score=123.99 Aligned_cols=82 Identities=27% Similarity=0.524 Sum_probs=73.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEE
Q 018875 99 GQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (349)
Q Consensus 99 ~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i 178 (349)
......+.++|||.|||+++|+++|+++|++||.|..|.|.++ ++||||+|.+.++|++||+.|++..|.++.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 3344456789999999999999999999999999999999754 6799999999999999999999999999999
Q ss_pred EEEeCCCC
Q 018875 179 EIKKAEPK 186 (349)
Q Consensus 179 ~v~~a~~~ 186 (349)
.|.++.+.
T Consensus 89 ~v~~a~~~ 96 (261)
T 3sde_A 89 RIRFATHG 96 (261)
T ss_dssp EEEECCCS
T ss_pred EeeecccC
Confidence 99998753
No 359
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1.2e-13 Score=108.13 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHHhhccCceEEEEEEecCC----CCCcccEEEEEecCHHHHHHHHHhCCCcccCC
Q 018875 105 KTKKIFVGGIPS-----SVSEDELKNFFSKYGKVLEHQIIRDHE----TNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (349)
Q Consensus 105 ~~~~l~V~nL~~-----~~t~e~l~~~F~~~G~v~~v~i~~~~~----~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g 175 (349)
++++|+|.|+-. +-.+++|+++|++||.|.+|.|++++. +.+++|++||+|+++++|++|++.||+..+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 577888888742 224789999999999999999999865 45778999999999999999999999999999
Q ss_pred eEEEEEeCCC
Q 018875 176 TQVEIKKAEP 185 (349)
Q Consensus 176 ~~i~v~~a~~ 185 (349)
++|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 360
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=8.6e-13 Score=100.04 Aligned_cols=68 Identities=19% Similarity=0.279 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCCCCC
Q 018875 116 SSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 190 (349)
Q Consensus 116 ~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~~~~ 190 (349)
.++|+++|+++|++||.|++|.|+. ++++||||+|+++++|++||+.++. +.+++|+|.+++++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCCC
Confidence 5789999999999999999999983 5789999999999999999998544 679999999998775443
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=8.5e-13 Score=100.07 Aligned_cols=76 Identities=11% Similarity=0.152 Sum_probs=66.0
Q ss_pred CceEEEcCCC-------cCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEE
Q 018875 18 PGKIFIGGLP-------KDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEI 90 (349)
Q Consensus 18 ~~~lfV~nLp-------~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v 90 (349)
.++|.|.-.+ .++|+++|+++|++||+|++|.|+. +++|||||+|++.++|++||+.++.+.+++|.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V 84 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKI 84 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEE
Confidence 6678777654 4589999999999999999999983 578999999999999999999888889999999
Q ss_pred eecCCCCC
Q 018875 91 KRTIPKGS 98 (349)
Q Consensus 91 ~~~~~~~~ 98 (349)
+++.+...
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99876543
No 362
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.45 E-value=1.9e-13 Score=114.57 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=69.4
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEEEE
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI 90 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i~v 90 (349)
......++|||.|||+++|+++|+++|++|++|..+ ..++++++||||+|.+.++|++|++.++ .+.++.|.|
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999887655 4478899999999999999999999655 899999999
Q ss_pred eecCCC
Q 018875 91 KRTIPK 96 (349)
Q Consensus 91 ~~~~~~ 96 (349)
+++.++
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 998765
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=7.8e-14 Score=119.43 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeC
Q 018875 105 KTKKIFVGGIPS-SVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 183 (349)
Q Consensus 105 ~~~~l~V~nL~~-~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a 183 (349)
..++|||.|||+ ++|+++|+++|++||.|.+|.|+.++ ++||||+|.++++|++||+.|++..|.++.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 467999999999 99999999999999999999998874 679999999999999999999999999999999999
Q ss_pred CCCCC
Q 018875 184 EPKKS 188 (349)
Q Consensus 184 ~~~~~ 188 (349)
.+...
T Consensus 77 ~~~~~ 81 (198)
T 1qm9_A 77 KHQNV 81 (198)
T ss_dssp CCCSC
T ss_pred cCCCc
Confidence 87643
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=1e-13 Score=121.43 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=66.9
Q ss_pred CCCCCceEEEcCCCcCC---------cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--c
Q 018875 14 DGASPGKIFIGGLPKDT---------TYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--I 82 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~---------te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~ 82 (349)
.....++|||+|||.++ |+++|+++|++||+|++|.|+.+ ++||||+|.+.++|++|++.++ .
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35678999999999998 79999999999999999999964 5899999999999999998554 5
Q ss_pred c------------CCcEEEEeecCCCCC
Q 018875 83 I------------NGKQVEIKRTIPKGS 98 (349)
Q Consensus 83 ~------------~g~~i~v~~~~~~~~ 98 (349)
| .++.|.|+++.....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 6 789999999986543
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=4.2e-14 Score=108.43 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=64.6
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEE
Q 018875 111 VGGIPSSVSEDELKNFF------------SKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (349)
Q Consensus 111 V~nL~~~~t~e~l~~~F------------~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i 178 (349)
+.+||+++++++|+++| ++||.|++|.|+++.. ++++|||||+|+++++|++|++.||+..+++++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888777666 9999999999998754 7899999999999999999999999999999999
Q ss_pred EEEeCC
Q 018875 179 EIKKAE 184 (349)
Q Consensus 179 ~v~~a~ 184 (349)
+|+++.
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 999863
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.36 E-value=1.5e-12 Score=101.78 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=67.7
Q ss_pred CCceEEEcCC--CcCC---cHHHHHHHHhcCCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHccC--ccCC
Q 018875 17 SPGKIFIGGL--PKDT---TYATFNKHFGKYGDITDSVIMKDRY----TGQPRGFGFITYADPSVVDKVIEDTH--IING 85 (349)
Q Consensus 17 ~~~~lfV~nL--p~~~---te~~l~~~F~~~G~i~~~~i~~~~~----~g~~kG~afVef~~~~~a~~al~~~~--~~~g 85 (349)
++++|+|.|+ |.++ .+++|+++|++||+|++|+|+++.. +.+++|++||+|+++++|++|++.++ .+.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 6889999998 3333 4789999999999999999999864 35678999999999999999999665 8999
Q ss_pred cEEEEeecC
Q 018875 86 KQVEIKRTI 94 (349)
Q Consensus 86 ~~i~v~~~~ 94 (349)
+.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=1.7e-12 Score=99.55 Aligned_cols=80 Identities=14% Similarity=0.146 Sum_probs=68.2
Q ss_pred CCCceEEEcCC--CcCCc--------HHHHHHHHhcCCCeeEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHccC--
Q 018875 16 ASPGKIFIGGL--PKDTT--------YATFNKHFGKYGDITDSVIMKDRYT--GQPRGFGFITYADPSVVDKVIEDTH-- 81 (349)
Q Consensus 16 ~~~~~lfV~nL--p~~~t--------e~~l~~~F~~~G~i~~~~i~~~~~~--g~~kG~afVef~~~~~a~~al~~~~-- 81 (349)
.++++|.|.|+ |.++. +++|+++|++||+|++|.|+++..+ .+++|+|||+|+++++|++|++.++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 44443 4789999999999999999988754 4689999999999999999999665
Q ss_pred ccCCcEEEEeecCC
Q 018875 82 IINGKQVEIKRTIP 95 (349)
Q Consensus 82 ~~~g~~i~v~~~~~ 95 (349)
.+.++.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 89999999998753
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=2.4e-12 Score=118.62 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=66.1
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccC---Ce
Q 018875 102 KDFKTKKIFVGG--IPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA---GT 176 (349)
Q Consensus 102 ~~~~~~~l~V~n--L~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~---g~ 176 (349)
.+.++++|||.| |++.+|+++|+++|++||+|++|.|.. .|+||||+|++.++|++||++||++++. ++
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 355889999999 589999999999999999999987753 4689999999999999999999999873 34
Q ss_pred --EEEEEeCC
Q 018875 177 --QVEIKKAE 184 (349)
Q Consensus 177 --~i~v~~a~ 184 (349)
+|.|.+++
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 56777764
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=4.8e-12 Score=98.27 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 104 FKTKKIFVGGIPSSV----------SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~----------t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
.++++|.|.|+=... .+++|+++|++||.|++|.|.++. ++|++||+|++.++|++|++.||+..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 467788888874321 246789999999999999997653 589999999999999999999999999
Q ss_pred CCeEEEEEeCCC
Q 018875 174 AGTQVEIKKAEP 185 (349)
Q Consensus 174 ~g~~i~v~~a~~ 185 (349)
.++.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999864
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=1.3e-12 Score=100.00 Aligned_cols=70 Identities=16% Similarity=0.368 Sum_probs=59.7
Q ss_pred EcCCCcCCcHHHHHHHH------------hcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 23 IGGLPKDTTYATFNKHF------------GKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 23 V~nLp~~~te~~l~~~F------------~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
+.+||+++|+++|+++| ++||+|++|.|+++. +++++|||||+|.++++|++|++.++ .+.++.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777887777666 999999999999887 57899999999999999999999655 8999999
Q ss_pred EEeec
Q 018875 89 EIKRT 93 (349)
Q Consensus 89 ~v~~~ 93 (349)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=6.8e-12 Score=115.63 Aligned_cols=114 Identities=8% Similarity=0.078 Sum_probs=77.3
Q ss_pred CCCCCCCCCCCceEEEcC--CCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--c-
Q 018875 8 DNPHTGDGASPGKIFIGG--LPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--I- 82 (349)
Q Consensus 8 ~~~~~~~~~~~~~lfV~n--Lp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~- 82 (349)
+......+.++++|||+| |+..+|+++|+++|++||+|++|+|.. +|+||||+|++.++|++|++.++ .
T Consensus 8 ~~~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 8 HEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp TTTCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred cCCceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 344455678889999999 588999999999999999999887754 45899999999999999999766 2
Q ss_pred --cCCc--EEEEeecCCCCC--CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcc
Q 018875 83 --INGK--QVEIKRTIPKGS--GQSKDFKTKKIFVGGIPSSVSEDELKNFFSKY 130 (349)
Q Consensus 83 --~~g~--~i~v~~~~~~~~--~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~ 130 (349)
..++ .|.|........ ......+.-..+ +|..+++++-.+++++.
T Consensus 82 ~~~~g~~~~ly~~~~~~~~~~~~~~~~lp~Gl~~---~p~fis~~Ee~~Ll~~i 132 (345)
T 3tht_A 82 VDDLGQKITLYLNFVEKVQWKELRPQALPPGLMV---VEEIISSEEEKMLLESV 132 (345)
T ss_dssp ECTTSCEEECEEEECSSEEEEEEECCSCCTTEEE---ETTCSCHHHHHHHHTTC
T ss_pred ccccCCceEEEEEEeecccccccccccCCCceEE---EcCcCCHHHHHHHHHhc
Confidence 2344 455555421110 011122222222 34556666666666554
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=5.1e-11 Score=92.72 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC-HHHHHHHHHhCC--CcccCCeEE
Q 018875 103 DFKTKKIFVGGIPSS-VSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS-EEVVDEMLSKGN--MIDMAGTQV 178 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~-~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~-~~~a~~Ai~~l~--~~~~~g~~i 178 (349)
-.+...|+|.||+++ +++++|+++|++||+|..|+++.+.. .|||+|.+ +++|++|+++|+ +..|++..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 346789999999999 99999999999999999999998865 69999999 899999999984 778999988
Q ss_pred EEEeCC
Q 018875 179 EIKKAE 184 (349)
Q Consensus 179 ~v~~a~ 184 (349)
+++..+
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887665
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=7.8e-11 Score=86.05 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCC
Q 018875 104 FKTKKIFVGGIP----SSVSE----DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG 175 (349)
Q Consensus 104 ~~~~~l~V~nL~----~~~t~----e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g 175 (349)
++.-||+|.-++ .++-+ .+|.+.|.+||+|..++|+.+ .+||+|++.++|.+||+ ||+.++.+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 356678887766 23333 668899999999999999988 48999999999999998 99999999
Q ss_pred eEEEEEeCCCCCC
Q 018875 176 TQVEIKKAEPKKS 188 (349)
Q Consensus 176 ~~i~v~~a~~~~~ 188 (349)
+.|+|.++++...
T Consensus 76 r~LkV~lkt~dW~ 88 (91)
T 2dnr_A 76 RTITIALKSPSGP 88 (91)
T ss_dssp EEEEEEECCCSSC
T ss_pred eEEEEEeCCCCcc
Confidence 9999999998654
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.10 E-value=2.4e-10 Score=88.66 Aligned_cols=76 Identities=9% Similarity=0.108 Sum_probs=63.0
Q ss_pred CCCCceEEEcCCC--cC--------CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--c
Q 018875 15 GASPGKIFIGGLP--KD--------TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--I 82 (349)
Q Consensus 15 ~~~~~~lfV~nLp--~~--------~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~ 82 (349)
+.++++|.|.|+= .+ ..+++|+++|++||+|++|.|+++. ++|++||+|++.++|++|++.++ .
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567889999983 22 1345789999999999999987653 58999999999999999999665 8
Q ss_pred cCCcEEEEeecC
Q 018875 83 INGKQVEIKRTI 94 (349)
Q Consensus 83 ~~g~~i~v~~~~ 94 (349)
+.++.|.|.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999864
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1e-09 Score=85.32 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=62.7
Q ss_pred CCCCCceEEEcCCCcC-CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHccC----ccCCcE
Q 018875 14 DGASPGKIFIGGLPKD-TTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD-PSVVDKVIEDTH----IINGKQ 87 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~-~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~-~~~a~~al~~~~----~~~g~~ 87 (349)
+-..-+.|+|.||+++ +++++|+++|++|++|..|.++++.. .|||+|.+ +++|++|+++++ .|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4466789999999999 99999999999999999999999874 59999999 789999998653 566666
Q ss_pred EEEeec
Q 018875 88 VEIKRT 93 (349)
Q Consensus 88 i~v~~~ 93 (349)
+.++..
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 666543
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=9.8e-10 Score=80.59 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=63.2
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 103 DFKTKKIFVGGIPSS-----VSE----DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 103 ~~~~~~l~V~nL~~~-----~t~----e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
-++.-||+|.-++.+ +-+ .+|.+.|.+||+|..++|+.+ -+||+|.+.++|.+||+ |++.++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeee
Confidence 347789999988743 222 568899999999999999998 49999999999999998 999999
Q ss_pred CCeEEEEEeCCC
Q 018875 174 AGTQVEIKKAEP 185 (349)
Q Consensus 174 ~g~~i~v~~a~~ 185 (349)
.++.|+|.+..+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999987653
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.89 E-value=9.5e-09 Score=89.37 Aligned_cols=68 Identities=21% Similarity=0.123 Sum_probs=61.4
Q ss_pred CCHHHHHHHhhccCceEEEEEEecC----CCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCC
Q 018875 118 VSEDELKNFFSKYGKVLEHQIIRDH----ETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP 185 (349)
Q Consensus 118 ~t~e~l~~~F~~~G~v~~v~i~~~~----~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~ 185 (349)
-.+++|+++|++||.|.+|.|+++. .+++++|++||+|.+.++|++|++.||+..+.+++|.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4678999999999999999998554 4458999999999999999999999999999999999998764
No 378
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.6e-08 Score=75.05 Aligned_cols=89 Identities=18% Similarity=0.400 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcC-----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCCcEE
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKY-----GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQV 88 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~-----G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g~~i 88 (349)
....++|.|.|||.+++++.|+-+|+.- |+|+++.... .-|+|+|.+.+.|++.|++ .|.+++.+|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 4567899999999999999999999772 6788888766 2599999999999999996 889999999
Q ss_pred EEeecCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 018875 89 EIKRTIPKGSGQSKDFKTKKIFVGGIPSSVS 119 (349)
Q Consensus 89 ~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t 119 (349)
.|....+. +..+|++.+|++.++
T Consensus 77 sV~P~~~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCC--------CCCCCCCCSCCCCCC
T ss_pred EEEcCCCC--------CcceEeeecCCCCCC
Confidence 99876554 677899999998875
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=1.3e-08 Score=74.25 Aligned_cols=73 Identities=14% Similarity=0.287 Sum_probs=59.3
Q ss_pred CCCceEEEcCCCc----CCcH----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccCCc
Q 018875 16 ASPGKIFIGGLPK----DTTY----ATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGK 86 (349)
Q Consensus 16 ~~~~~lfV~nLp~----~~te----~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~g~ 86 (349)
.+.-||+|.-+|. ++-. .+|++.|++||+|..++++.++ +||+|.+.++|.+||+ +...+.++
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 3455788876652 3333 6788999999999999999986 8999999999999998 33489999
Q ss_pred EEEEeecCCC
Q 018875 87 QVEIKRTIPK 96 (349)
Q Consensus 87 ~i~v~~~~~~ 96 (349)
.|+|+.+.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998754
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.70 E-value=6e-08 Score=72.49 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-----CceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKY-----GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~-----G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
..++|-|-+||.+++++.|+.+++++ +.|+.|.+..|.. =|+|+|+|..+|-+|.-+|++.+|++++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 57899999999999999999999999 9999999998854 799999999999999999999999999999
Q ss_pred EEe
Q 018875 180 IKK 182 (349)
Q Consensus 180 v~~ 182 (349)
|--
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 853
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.61 E-value=1.4e-07 Score=81.92 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=62.6
Q ss_pred CceEEEcCC-----CcCCcHHHHHHHHhcCCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHccC--ccCCc
Q 018875 18 PGKIFIGGL-----PKDTTYATFNKHFGKYGDITDSVIMKDRY----TGQPRGFGFITYADPSVVDKVIEDTH--IINGK 86 (349)
Q Consensus 18 ~~~lfV~nL-----p~~~te~~l~~~F~~~G~i~~~~i~~~~~----~g~~kG~afVef~~~~~a~~al~~~~--~~~g~ 86 (349)
+..|.+.++ ..+..+++|.+.|++||+|+++.|+++.. +++++|++||+|.+.++|++|++.++ .+.++
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 344555554 23356788999999999999999996653 45899999999999999999999665 89999
Q ss_pred EEEEeecC
Q 018875 87 QVEIKRTI 94 (349)
Q Consensus 87 ~i~v~~~~ 94 (349)
+|.+....
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99998865
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=5.7e-08 Score=71.23 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=59.0
Q ss_pred CCCCceEEEcCCCcC-----CcH----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-ccCccC
Q 018875 15 GASPGKIFIGGLPKD-----TTY----ATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIIN 84 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~-----~te----~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~-~~~~~~ 84 (349)
-.+.-||+|.-++.+ +-. .+|.+.|++||+|..++++.++ +||+|.+.++|.+||+ +...+.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC
Confidence 345668999877633 322 5688999999999999999986 9999999999999999 444999
Q ss_pred CcEEEEeecC
Q 018875 85 GKQVEIKRTI 94 (349)
Q Consensus 85 g~~i~v~~~~ 94 (349)
++.|+|+...
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998754
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.4e-06 Score=63.91 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=62.3
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcC-----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--ccCccCCcE
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKY-----GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQ 87 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~-----G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~--~~~~~~g~~ 87 (349)
.++.++|-|-+||.++++..|+.+++++ +.|+++.+..|- +=|+|+|.|...|-+|.- +..+|.++.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4567899999999999999999999999 999999999987 469999999999999876 444888888
Q ss_pred EEEe
Q 018875 88 VEIK 91 (349)
Q Consensus 88 i~v~ 91 (349)
|.+-
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8875
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=1.6e-05 Score=58.98 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-----CceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEE
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKY-----GKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQV 178 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~-----G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i 178 (349)
...++|.|.|||..+.++.|+-.|++- |+|+.|..... -|+|+|.+.++|++.|++ ..+.|++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~--------~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC--------GGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT--------EEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC--------cEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 356799999999999999999999972 68988888653 899999999999999985 5788999999
Q ss_pred EEEeCCCCC
Q 018875 179 EIKKAEPKK 187 (349)
Q Consensus 179 ~v~~a~~~~ 187 (349)
.|....++.
T Consensus 77 sV~P~~~~~ 85 (104)
T 2dhx_A 77 SLRPAPPRA 85 (104)
T ss_dssp EEEECCCCC
T ss_pred EEEcCCCCC
Confidence 997765544
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.03 E-value=3.2e-05 Score=56.64 Aligned_cols=62 Identities=15% Similarity=0.309 Sum_probs=50.0
Q ss_pred CCCCCCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 10 PHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 10 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
..+......+.++| .+|+++...||.++|++|+.|. |.-+.|. .|||.|.+++.|..|+..+
T Consensus 8 g~d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 8 GPDLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSCCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34445566777888 9999999999999999999654 5555553 7999999999999998843
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.89 E-value=6.4e-05 Score=55.98 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEE
Q 018875 105 KTKKIFVGGIPSSV-S----EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVE 179 (349)
Q Consensus 105 ~~~~l~V~nL~~~~-t----~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~ 179 (349)
-.++|+|.||+.++ + .+.|+++|.+|.++.....++.-. -..|.|.++++|.+|..+|++..+.++.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45789999998765 2 257789999999888877776522 578999999999999999999999999999
Q ss_pred EEeCCCCC
Q 018875 180 IKKAEPKK 187 (349)
Q Consensus 180 v~~a~~~~ 187 (349)
|-++++..
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 99988543
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.62 E-value=0.00033 Score=51.22 Aligned_cols=79 Identities=8% Similarity=0.124 Sum_probs=61.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCc--ccEEEEEecCHHHHHHHHHhCCCcccCCe-----EEE
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRS--RGFGFVIFDSEEVVDEMLSKGNMIDMAGT-----QVE 179 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~--~G~afV~f~~~~~a~~Ai~~l~~~~~~g~-----~i~ 179 (349)
++|.|.+||+++||+++.+.+...-.+.....+..+.+.++ ..-|+|.|.+.+++..-.+.++++.+.+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 47999999999999999999999888877777766544332 33589999999999999999988876442 345
Q ss_pred EEeCCC
Q 018875 180 IKKAEP 185 (349)
Q Consensus 180 v~~a~~ 185 (349)
|++|.-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 565543
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=0.00022 Score=53.06 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=62.0
Q ss_pred CCCceEEEcCCCcCC-c----HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC--ccCCcEE
Q 018875 16 ASPGKIFIGGLPKDT-T----YATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQV 88 (349)
Q Consensus 16 ~~~~~lfV~nLp~~~-t----e~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~--~~~g~~i 88 (349)
+-.++|+|.||+.++ + +++++++|..|.++.....++.- .=..|.|.++++|.+|...+| .+.++.+
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 346789999998765 2 36789999999999888877764 247899999999999998766 7899999
Q ss_pred EEeecCCCC
Q 018875 89 EIKRTIPKG 97 (349)
Q Consensus 89 ~v~~~~~~~ 97 (349)
+|..+.+..
T Consensus 77 r~YFgq~~~ 85 (104)
T 1wey_A 77 KLYFAQTLH 85 (104)
T ss_dssp EEECCCCSS
T ss_pred EEEecCCCC
Confidence 999887543
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.58 E-value=0.00018 Score=52.71 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=45.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 169 (349)
.+..++| .+|.++...||.++|++||.| .|..+.|. .|||.|.+++.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3445666 999999999999999999955 45555553 89999999999999998653
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.39 E-value=0.00055 Score=52.38 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=58.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCC-eEEEEEe
Q 018875 104 FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAG-TQVEIKK 182 (349)
Q Consensus 104 ~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g-~~i~v~~ 182 (349)
...+.|.|-++|... ...|.++|++||+|.+...... .-.-.|.|+++.+|++||.+ |+..|.+ ..|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 356789999998885 6778889999999998887322 22899999999999999997 8888874 6667766
Q ss_pred CC
Q 018875 183 AE 184 (349)
Q Consensus 183 a~ 184 (349)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.38 E-value=0.00018 Score=52.79 Aligned_cols=53 Identities=17% Similarity=0.407 Sum_probs=44.0
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
++.++| .+|+++...||.++|++|+.| .|.-+.|. .|||.|.+++.|..|+..
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 456677 999999999999999999854 35555553 799999999999999884
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.34 E-value=0.00028 Score=51.84 Aligned_cols=53 Identities=23% Similarity=0.397 Sum_probs=44.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 169 (349)
.++| .+|.++...||.++|++||.| .|..+.|. .|||.|.+++.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999944 56666653 89999999999999999754
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.20 E-value=0.00097 Score=49.04 Aligned_cols=80 Identities=5% Similarity=0.069 Sum_probs=58.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCc--ccEEEEEecCHHHHHHHHHhCCCcccCCe-----E
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRS--RGFGFVIFDSEEVVDEMLSKGNMIDMAGT-----Q 177 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~--~G~afV~f~~~~~a~~Ai~~l~~~~~~g~-----~ 177 (349)
.+.+|.|..||+.+||+++.+.+...=++.....+..+.+.+. -.-|+|.|.+.+++..-.+.+++..+.+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 5678999999999999999999887655544333333332221 23589999999999999999998876442 4
Q ss_pred EEEEeCC
Q 018875 178 VEIKKAE 184 (349)
Q Consensus 178 i~v~~a~ 184 (349)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5566654
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.18 E-value=0.0011 Score=48.49 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=48.7
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHc
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTG--QPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g--~~kG~afVef~~~~~a~~al~~ 79 (349)
++|.|.+||+.+||+++.+.+..+..+.....+.-+.+. ....-|+|.|.+.+++....+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~ 64 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR 64 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 589999999999999999999998777666665554322 2234699999999999988884
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.17 E-value=0.0019 Score=49.39 Aligned_cols=73 Identities=18% Similarity=0.298 Sum_probs=55.6
Q ss_pred CCCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-cCccCC-cEEEEe
Q 018875 14 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIING-KQVEIK 91 (349)
Q Consensus 14 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~-~~~~~g-~~i~v~ 91 (349)
+..+.+-|.|-++|.+. .+.|.++|++||+|.+...... ..+..|.|.++.+|++||.. ...+.+ ..|-|+
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEE
Confidence 44567889999999995 5678899999999998887322 24899999999999999994 445553 455565
Q ss_pred ec
Q 018875 92 RT 93 (349)
Q Consensus 92 ~~ 93 (349)
+.
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.56 E-value=0.001 Score=63.25 Aligned_cols=57 Identities=11% Similarity=0.287 Sum_probs=44.4
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
..++|||. +|.++++.+|.++|++||+|.++.+-++.. -||.|||.+.+++.++++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 45689997 899999999999999999999998887652 5999999999999988874
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.45 E-value=0.0033 Score=46.19 Aligned_cols=63 Identities=10% Similarity=0.087 Sum_probs=44.5
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHc
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQ--PRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~--~kG~afVef~~~~~a~~al~~ 79 (349)
.+-+|.|..||+.+||+++.+.+..+-++.....+.-+.+.+ .-.-|||.|++.+++....+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~ 72 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR 72 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 466899999999999999998888765543322222221111 123489999999999998884
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.93 E-value=0.0027 Score=60.45 Aligned_cols=57 Identities=16% Similarity=0.409 Sum_probs=43.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
..++|+|. .|..+++.+|.+.|++||+|.++.+.+++. -||.|||.+.++++++++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 34689997 799999999999999999999998887532 4999999999999988754
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.51 E-value=0.011 Score=45.79 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=51.3
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeec---------CCCCC-----cceEEEEEeCCHHHHHHHHH-ccC
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKD---------RYTGQ-----PRGFGFITYADPSVVDKVIE-DTH 81 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~---------~~~g~-----~kG~afVef~~~~~a~~al~-~~~ 81 (349)
....|.|=++|++.+. .|.++|++||.|.+..-+.+ ++..+ ...+..|+|.++.+|.+||. +..
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 4556888889887655 67888999999876322111 00011 23578999999999999998 556
Q ss_pred ccCCcEEEEeec
Q 018875 82 IINGKQVEIKRT 93 (349)
Q Consensus 82 ~~~g~~i~v~~~ 93 (349)
.|.+.-|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 777776666654
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.70 E-value=0.029 Score=43.45 Aligned_cols=79 Identities=16% Similarity=0.370 Sum_probs=53.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEE-EEEEec--------CCCCC-----cccEEEEEecCHHHHHHHHHhCCC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLE-HQIIRD--------HETNR-----SRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~-v~i~~~--------~~~g~-----~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
....|.|-+.|.+.+ ..|.++|++||.|.+ +.+.+. +...+ ......|+|+++.+|++||.+ |+
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 345677778866554 456678999999876 211110 00011 133679999999999999997 99
Q ss_pred cccCCeEEEEEeCCC
Q 018875 171 IDMAGTQVEIKKAEP 185 (349)
Q Consensus 171 ~~~~g~~i~v~~a~~ 185 (349)
..|.+.-|-|....+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999998888876653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.94 E-value=0.27 Score=47.50 Aligned_cols=55 Identities=16% Similarity=0.403 Sum_probs=44.5
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
.++.++|. +|..|...+|.++|+.|+.| +|..+.+. .|||.|.+.+.|..+++..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHH
Confidence 45677776 99999999999999999964 45544443 7999999999999998854
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=91.58 E-value=1.9 Score=30.64 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=54.1
Q ss_pred CCCCceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEEee
Q 018875 15 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKR 92 (349)
Q Consensus 15 ~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~ 92 (349)
-...+.|-|-|||..+-+.++.-.....|----|..+. |-|.|.|.+.++...|++.+..-+...++++.
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqiei 78 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEI 78 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 35677889999999999999888888877655555554 45999999999999999866555566666654
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.44 E-value=0.34 Score=46.78 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
+..++|. +|..+...+|.++|+.|+.| +|..+.++ .|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 4466666 88899999999999999955 44444432 899999999999999998653
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=90.67 E-value=1.2 Score=31.61 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=47.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhC
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKG 168 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 168 (349)
+.+-|.|-|+|..+-..++.-.....|.--.|+.+.. .|.|.|.+.++...||++|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg--------qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG--------QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS--------CEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC--------eeEEEecCChHHHHHHHHH
Confidence 4667889999999988888877787777777777654 8999999999999999975
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.50 E-value=2.2 Score=29.26 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHhhccC-----ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 116 SSVSEDELKNFFSKYG-----KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 116 ~~~t~e~l~~~F~~~G-----~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
..++..+|..++..-+ .|-.|+|..+ |+||+-... .++++++.|+...+.++.+.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 3566677777666433 4667788665 899988654 4667888889999999999988764
No 406
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=75.29 E-value=4.1 Score=29.54 Aligned_cols=68 Identities=9% Similarity=0.129 Sum_probs=44.6
Q ss_pred EcCCCCCCCHHHHHHHh-hccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCCCCC
Q 018875 111 VGGIPSSVSEDELKNFF-SKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 187 (349)
Q Consensus 111 V~nL~~~~t~e~l~~~F-~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~~~~ 187 (349)
|-.++..++-++|.... +.||.-.++....+ ...|-..+.++..+||+.|+-. ..-+.|+|-+..++.
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGS 89 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCC
Confidence 33455677777776554 46788777776633 5789999999999999986544 222334444444443
No 407
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=73.20 E-value=19 Score=25.63 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=23.5
Q ss_pred eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 45 ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 45 i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
|.++.+.. ...||.||++...++...++.+.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTC
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCC
Confidence 55555543 26799999999999988888753
No 408
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=68.24 E-value=7.6 Score=26.88 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=38.7
Q ss_pred EEEEEeCCHHHHHHHHHccCccCCcEEE---EeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcc
Q 018875 62 FGFITYADPSVVDKVIEDTHIINGKQVE---IKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKY 130 (349)
Q Consensus 62 ~afVef~~~~~a~~al~~~~~~~g~~i~---v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~ 130 (349)
|+++.|+.+.++.+-|+....++..-|+ |+...++ +-.++|| |.++++++++++++++|
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r--------~YE~m~I--l~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPG--------RYEVNIV--LNPNLDQSQLQNEKEII 68 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTT--------EEEEEEE--ECTTCCHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCC--------ceEEEEE--ECCCCCHHHHHHHHHHH
Confidence 8999998888787777754445554443 3332211 2335666 56778899988888776
No 409
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=69.18 E-value=1.3 Score=33.00 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=33.3
Q ss_pred CCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEE--EecCHHHHHHHHHhCCCc
Q 018875 118 VSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFV--IFDSEEVVDEMLSKGNMI 171 (349)
Q Consensus 118 ~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV--~f~~~~~a~~Ai~~l~~~ 171 (349)
.++++|.++..+.. +..+.+.+....++.. |..| .|.+.++|.+|++.|...
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 34566666666664 3446665544444443 4433 889999999999987654
No 410
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=62.67 E-value=32 Score=25.92 Aligned_cols=128 Identities=11% Similarity=0.183 Sum_probs=78.5
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHccCccCCcEEEEeecC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD----PSVVDKVIEDTHIINGKQVEIKRTI 94 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~----~~~a~~al~~~~~~~g~~i~v~~~~ 94 (349)
.+|.|.++.=.--...|...+...-.|.++.+-... .-+.|+|.. .++..+++++. +..+.+....
T Consensus 6 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~----G~~~~~~~~~ 75 (149)
T 2ew9_A 6 CFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMA------GKAEIKYDPEVIQPLEIAQFIQDL----GFEAAVMEDY 75 (149)
T ss_dssp EEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH----TCEEEECSCS
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecC------CEEEEEEcCCCCCHHHHHHHHhcC----CCceEeeccc
Confidence 467788887665566788888887667666654432 246777743 34455555532 1122211100
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec----CHHHHHHHHHhC
Q 018875 95 PKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD----SEEVVDEMLSKG 168 (349)
Q Consensus 95 ~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~----~~~~a~~Ai~~l 168 (349)
.......+|.|.++.-......|+..+.+.-.|..+.+-... ..+.|+|. +.++..++|+.+
T Consensus 76 ------~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 76 ------AGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALAT------SKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp ------CCSSSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTT------TEEEEECCTTTSCHHHHHHHHHHH
T ss_pred ------ccccceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCC------CEEEEEECCCCCCHHHHHHHHHhC
Confidence 001134568888988777788899999888777777765432 27888886 456677777653
No 411
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=61.93 E-value=11 Score=24.89 Aligned_cols=56 Identities=4% Similarity=-0.035 Sum_probs=43.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
...++.|.++.-.-....|++.+.+ -.|..+.+-.. ...+.|+|.+.++..++|+.
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 3457889999888889999999998 77887777443 23678888877777888876
No 412
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=61.09 E-value=13 Score=35.62 Aligned_cols=94 Identities=11% Similarity=0.125 Sum_probs=46.3
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHccCccCCcEEEEeec
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGF-GFITYADPSVVDKVIEDTHIINGKQVEIKRT 93 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~g~~kG~-afVef~~~~~a~~al~~~~~~~g~~i~v~~~ 93 (349)
..+|.|..||+.++.+.|.+.+.+. ..|..|.-++|..+. .+. -.|+++....++..++.+.+.-..+..+..
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~--~gvrivIelk~~~~~e~vl~~L~k~t~Lq~s~~~- 351 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDR--TGLRIAIELKKDVNSESIKNYLYKNSDLQISYNF- 351 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBT--TBCCEEEEC------CHHHHHHTTSSTTEEEEEE-
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCC--CceEEEEEECCCcCHHHHHHHHHHhcCceeeeee-
Confidence 4689999999999998887766542 334334444454321 133 345666666666666544332222222221
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHH
Q 018875 94 IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNF 126 (349)
Q Consensus 94 ~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~ 126 (349)
+..+++.+.|...+..+|.+.
T Consensus 352 ------------Nm~al~~g~p~~~~l~~iL~~ 372 (514)
T 2inr_A 352 ------------NMVAISDGRPKLMGIRQIIDS 372 (514)
T ss_dssp ------------ECEEEETTEEEECCHHHHHHH
T ss_pred ------------eEEEeeCCEEEECCHHHHHHH
Confidence 124446666666665555443
No 413
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=59.72 E-value=15 Score=31.64 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=20.7
Q ss_pred EEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 151 GFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 151 afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
-.-.|.+.++++.+|+++....-+ -.|.|
T Consensus 158 ~iPlFF~KedL~~~l~~~kkq~P~-~~I~V 186 (252)
T 4ev1_A 158 VVPLFLSKQDAQGLLGQVKPKHPK-ADIQV 186 (252)
T ss_dssp EEEEESSHHHHHHHHHHHTTTCTT-CEEEE
T ss_pred EEeeEecHHHHHHHHHHHHHhCCC-CcEEE
Confidence 445889999999999987655444 44554
No 414
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=58.67 E-value=12 Score=35.20 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=37.2
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHcc
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGF-GFITYADPSVVDKVIEDT 80 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~g~~kG~-afVef~~~~~a~~al~~~ 80 (349)
...+|.|..||+.++.+.|.+.+... ..|..|.-++|.++.+ .+. -.|+++....++..++.+
T Consensus 235 ~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~-~gvrivI~lk~~~~~~~~l~~L 301 (470)
T 3ilw_A 235 GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR-VGLRIVIEIKRDAVAKVVINNL 301 (470)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTT-TBCCEEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCC-CceEEEEEECCCCCHHHHHHHH
Confidence 45679999999999999888776442 3333344445441211 133 345666655555555533
No 415
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=52.64 E-value=32 Score=24.48 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=12.4
Q ss_pred EEEEEecCHHHHHHHHHh
Q 018875 150 FGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 150 ~afV~f~~~~~a~~Ai~~ 167 (349)
...|...+.+-|++||.-
T Consensus 53 ivvvvvddkewaekairf 70 (134)
T 2l69_A 53 IVVVVVDDKEWAEKAIRF 70 (134)
T ss_dssp EEEEECSSHHHHHHHHHH
T ss_pred EEEEEEccHHHHHHHHHH
Confidence 344556678888888874
No 416
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=51.56 E-value=58 Score=24.23 Aligned_cols=99 Identities=17% Similarity=0.295 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHccC----ccCCcEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHH---HhhccCceEEEEEEe
Q 018875 68 ADPSVVDKVIEDTH----IINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKN---FFSKYGKVLEHQIIR 140 (349)
Q Consensus 68 ~~~~~a~~al~~~~----~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~---~F~~~G~v~~v~i~~ 140 (349)
.|.+..++|++++. ++.+..... ..- ....|.|.++|..+..|..++ +-.+|-......|+-
T Consensus 11 ddlea~ekalkemirqarkfagtvtyt-l~g----------n~l~i~itgvpeqvrkelakeaerl~~efni~v~y~img 79 (170)
T 4hhu_A 11 DDLEALEKALKEMIRQARKFAGTVTYT-LSG----------NRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMG 79 (170)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEE-EET----------TEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CcHHHHHHHHHHHHHHHHhhcceEEEE-EeC----------CEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEe
Confidence 46777788887443 455432221 111 344677889998876654432 333454444455553
Q ss_pred cCCCCCcccEEEEEe--cCHHHHHHHHHhC-------CC---cccCCeEEEEEe
Q 018875 141 DHETNRSRGFGFVIF--DSEEVVDEMLSKG-------NM---IDMAGTQVEIKK 182 (349)
Q Consensus 141 ~~~~g~~~G~afV~f--~~~~~a~~Ai~~l-------~~---~~~~g~~i~v~~ 182 (349)
. ..+.-.|.| ++.++.++|++.| .+ ..+.+..|.|..
T Consensus 80 s-----gsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~i 128 (170)
T 4hhu_A 80 S-----GSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVI 128 (170)
T ss_dssp T-----TCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEE
T ss_pred C-----CceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEE
Confidence 3 234566777 4788899988753 22 235666666654
No 417
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=50.17 E-value=22 Score=33.72 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=38.1
Q ss_pred CCceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 17 SPGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 17 ~~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
...+|.|..||+.++.+.|.+.+... ..|..|.-++|..+...- --.|+.+....++..++.+
T Consensus 225 ~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gv-rivIelk~~~~~~~~l~~L 290 (500)
T 3lpx_A 225 GKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGM-RMVIEIKRGEVGEVVLNNL 290 (500)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCC-CEEEEECTTSCHHHHHHHH
T ss_pred CCceEEEEecCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCCce-EEEEEECCCCCHHHHHHHH
Confidence 45689999999999998888766432 334434445554332211 2345676655565555543
No 418
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=47.09 E-value=40 Score=24.72 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=27.3
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccC
Q 018875 44 DITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIIN 84 (349)
Q Consensus 44 ~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~ 84 (349)
.|.++..... .+||.|||=.++.++..|++....+.
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhccccee
Confidence 3666665544 46999999999999999999655443
No 419
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=46.20 E-value=1.1e+02 Score=24.44 Aligned_cols=138 Identities=12% Similarity=0.193 Sum_probs=81.6
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHccCccCCcEEEEeec
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD----PSVVDKVIEDTHIINGKQVEIKRT 93 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~----~~~a~~al~~~~~~~g~~i~v~~~ 93 (349)
..+|.|.++.=..=...|.+.+...-.|.++.+-... ..+.|+|.. .++..++++.... .+-.+.+...
T Consensus 21 ~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~~~-gg~~v~~~~~ 93 (202)
T 2rop_A 21 TLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLEN------KTAQVKYDPSCTSPVALQRAIEALPP-GNFKVSLPDG 93 (202)
T ss_dssp EEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHTTSSS-SCSEEEC---
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHhcc-CCeEEEeccc
Confidence 4468888886655566799999888778777765433 357788864 3445555553210 0111111000
Q ss_pred C-------------C---C-CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec
Q 018875 94 I-------------P---K-GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD 156 (349)
Q Consensus 94 ~-------------~---~-~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~ 156 (349)
. . . ...........+|.|.++.-......|+..+.+.--|..+.+-... ..+.|+|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~ 167 (202)
T 2rop_A 94 AEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAE------GTATVLYN 167 (202)
T ss_dssp --------------------------CCEEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTT------TEEEEEEC
T ss_pred cccccccccccccccccccccccccccceEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccC------CEEEEEEC
Confidence 0 0 0 0000001123568888988888888899999998778887775442 27888885
Q ss_pred ----CHHHHHHHHHhC
Q 018875 157 ----SEEVVDEMLSKG 168 (349)
Q Consensus 157 ----~~~~a~~Ai~~l 168 (349)
+.++..++|+.+
T Consensus 168 ~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 168 PAVISPEELRAAIEDM 183 (202)
T ss_dssp TTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHc
Confidence 356666777653
No 420
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.81 E-value=41 Score=27.05 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=32.8
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hccCceEEEEEEecCCCCCcccEEEEEecC
Q 018875 108 KIFVGGIPS-S--------VSEDELKNFF--SKYGKVLEHQIIRDHETNRSRGFGFVIFDS 157 (349)
Q Consensus 108 ~l~V~nL~~-~--------~t~e~l~~~F--~~~G~v~~v~i~~~~~~g~~~G~afV~f~~ 157 (349)
++.|.|+|. . ....+|++.| ..|.+++...+... .-..++|+|+|.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~---~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNY---LGHSGTAIVEFNK 71 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECS---SBEEEEEEEECCS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccC---CCCceeEEEEecC
Confidence 556667765 1 3457899977 89988875555544 2367899999975
No 421
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=45.76 E-value=1.2e+02 Score=24.52 Aligned_cols=122 Identities=9% Similarity=-0.031 Sum_probs=64.8
Q ss_pred ceEEEcCC----CcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEe-CCHHHHHHHHHc-cCccCCc--EEEE
Q 018875 19 GKIFIGGL----PKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITY-ADPSVVDKVIED-THIINGK--QVEI 90 (349)
Q Consensus 19 ~~lfV~nL----p~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef-~~~~~a~~al~~-~~~~~g~--~i~v 90 (349)
..+++.+| ...+.-.||++.|+..|- .+|+..... |-.+.+- .++++.++.|++ +..--+. ++.|
T Consensus 7 yiaLLRGINVGG~nkv~MadLr~~l~~lGf-~~V~TyI~S------GNvvF~s~~~~~~l~~~ie~~l~~~fg~~v~v~v 79 (183)
T 2hiy_A 7 YALLVRGINVGGKNKVVMAELRQELTNLGL-EKVESYINS------GNIFFTSIDSKAQLVEKLETFFAVHYPFIQSFSL 79 (183)
T ss_dssp EEEECSSCSCC-CCCCCHHHHHHHHHHHTC-EEEEEETTT------TEEEEEECSCHHHHHHHHHHHHHHHCTTCCCCEE
T ss_pred hhhhccceecCCCCcccHHHHHHHHHHcCC-ccceEEEec------CCEEEecCCCHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 45666766 356889999999998863 445544432 3333322 233444444442 1111111 1222
Q ss_pred eec------CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcc-CceEEEEEEecCCCCCcccEEEE-Eec
Q 018875 91 KRT------IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKY-GKVLEHQIIRDHETNRSRGFGFV-IFD 156 (349)
Q Consensus 91 ~~~------~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~-G~v~~v~i~~~~~~g~~~G~afV-~f~ 156 (349)
... .....-.... +..+++|.=|+..++.++|.+.+... ...+.+.+... ..|+ .|.
T Consensus 80 rs~~el~~i~~~~Pf~~~~-~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~~~--------~iy~~~~~ 144 (183)
T 2hiy_A 80 LSLEDFEAELENLPAWWSR-DLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFGKL--------GIFWGKFS 144 (183)
T ss_dssp EEHHHHHHHHTTCCGGGGS-CCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEECSS--------EEEEEECC
T ss_pred ecHHHHHHHHHhCCCCccC-CCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEECC--------EEEEEEeC
Confidence 211 0111111111 46788888888889999977766544 24466666443 6677 673
No 422
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=45.67 E-value=24 Score=34.98 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=37.0
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDR-YTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~-~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
..+|.|..||+.++.+.|.+.+.+. ..|..|.-++|. .+...- --.|+++....++..++.+
T Consensus 457 ~~~ivITElPy~v~k~~lie~I~~lv~~kki~~I~d~rDetsd~~gv-rivI~lk~~~~~~~~l~~L 522 (692)
T 2xcs_B 457 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV-RVVIDVRKDANASVILNNL 522 (692)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHTTCSCCEEEEEECCBTTTBS-CEEEEECTTSCHHHHHHHH
T ss_pred CceEEEEecCCcccHHHHHHHHHHHHhcCCCCCeeeccccCCCCCce-EEEEEECCCCCHHHHHHHH
Confidence 4689999999999998877765432 334444445554 221111 2346677766666555543
No 423
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=45.37 E-value=14 Score=26.69 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=37.4
Q ss_pred EEEEEeCCHHHHHHHHHccCccCC---cEEEEeecCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcc
Q 018875 62 FGFITYADPSVVDKVIEDTHIING---KQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKY 130 (349)
Q Consensus 62 ~afVef~~~~~a~~al~~~~~~~g---~~i~v~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~ 130 (349)
|+++.|..+.++.+-++....++. |.+.|+... -..-.++|| |.++++++++.++.++|
T Consensus 7 Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~--------Mr~YE~m~I--l~P~l~ee~~~~~ve~~ 68 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTT--------PGRYEVNIV--LNPNLDQSQLALEKEII 68 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSS--------SSCEEEEEE--CCSSCCHHHHHHHHHHH
T ss_pred EEEEEeecChhHHHHHHHHhccchhhhhhhheehhh--------hhhhheeee--eCCCCCHHHHHHHHHHH
Confidence 799999999988888874332333 333333221 013346666 77888888887776654
No 424
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.34 E-value=35 Score=27.49 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=35.9
Q ss_pred ceEEEcCCCcC---------CcHHHHHHHH--hcCCCeeEEEEeecCCCCCcceEEEEEeCCHH
Q 018875 19 GKIFIGGLPKD---------TTYATFNKHF--GKYGDITDSVIMKDRYTGQPRGFGFITYADPS 71 (349)
Q Consensus 19 ~~lfV~nLp~~---------~te~~l~~~F--~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~ 71 (349)
-++.|-|+|.+ ...++|++.| +.|.+++ |..+... .-+.++|.|+|.+.-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCCh
Confidence 35677888872 3447899977 9998876 5555554 236789999999855
No 425
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=43.88 E-value=54 Score=23.20 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=25.6
Q ss_pred eEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCc
Q 018875 133 VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI 171 (349)
Q Consensus 133 v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~ 171 (349)
|.++.++.. .+||.||+++..++...+|+.+.+.
T Consensus 40 i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 555555432 6889999999999999998765543
No 426
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=43.58 E-value=83 Score=22.56 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=42.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC----HHHHHHHHHhC
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS----EEVVDEMLSKG 168 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~----~~~a~~Ai~~l 168 (349)
..+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|.. .++..++|+.+
T Consensus 9 ~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~------~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 9 TQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVAT------GRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 3468888888888888899999988778877775442 378888873 45666777654
No 427
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=43.38 E-value=54 Score=21.15 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=41.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec----CHHHHHHHHHh
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD----SEEVVDEMLSK 167 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~----~~~~a~~Ai~~ 167 (349)
.++.|.++.-.-....|++.+.+.-.|..+.+-... ..+.|+|. +.++..++|+.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 467788888777788899999988778877775442 37888885 56677777775
No 428
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=42.18 E-value=45 Score=21.73 Aligned_cols=55 Identities=13% Similarity=0.011 Sum_probs=40.2
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
..+|.|.++.=..=...|++.+.+ -.|..+.+-... ..+.|+|.+.++..++|++
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHH
Confidence 457888888766667789999988 778777765543 4678888866666667763
No 429
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=46.18 E-value=6 Score=28.34 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=44.1
Q ss_pred CCCCCCceEEEcCCCcCCcHHHHHHH--------HhcC-----CCeeEEEEeecCCCC----CcceEEEEEeCCHHHHHH
Q 018875 13 GDGASPGKIFIGGLPKDTTYATFNKH--------FGKY-----GDITDSVIMKDRYTG----QPRGFGFITYADPSVVDK 75 (349)
Q Consensus 13 ~~~~~~~~lfV~nLp~~~te~~l~~~--------F~~~-----G~i~~~~i~~~~~~g----~~kG~afVef~~~~~a~~ 75 (349)
..-...+.|-|-|||..+-+.++.-. +..| ..|.+-.|..+.+.. ...|-|.|.|.+.++...
T Consensus 13 veikqnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqrl 92 (137)
T 2lsl_A 13 VEIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQRL 92 (137)
Confidence 34456677888889888766665432 2222 123333344433211 234778899999888888
Q ss_pred HHHccCccCCcEEEE
Q 018875 76 VIEDTHIINGKQVEI 90 (349)
Q Consensus 76 al~~~~~~~g~~i~v 90 (349)
|++++..-+...+++
T Consensus 93 aiqkllnhnnnklqi 107 (137)
T 2lsl_A 93 AIQKLLNHNNNKLQI 107 (137)
Confidence 887554333333333
No 430
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.40 E-value=97 Score=21.71 Aligned_cols=55 Identities=7% Similarity=0.122 Sum_probs=36.1
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHc
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA-DPSVVDKVIED 79 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~-~~~~a~~al~~ 79 (349)
..+|.|. +.-..-...|++.+.+.-.|.++.+-... ..+.|++. +.++..++|++
T Consensus 20 ~~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 20 TLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHHT
T ss_pred EEEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHH
Confidence 3456666 65444557789999988888887776554 35677774 44556666663
No 431
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=38.08 E-value=24 Score=30.33 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=26.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEec
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRD 141 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~ 141 (349)
...|.|||+.++.+.|..+++....+..+.++..
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 4589999999999999999987656655555443
No 432
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=37.89 E-value=15 Score=32.15 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=27.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEec
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRD 141 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~ 141 (349)
...+.|.|||+.++...|.++++....+..+.++..
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 346789999999999999999986555655555443
No 433
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=37.64 E-value=25 Score=24.67 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=25.2
Q ss_pred CCCCCCCCceEEEcCCCcCCcHHHHHHHHhcC
Q 018875 11 HTGDGASPGKIFIGGLPKDTTYATFNKHFGKY 42 (349)
Q Consensus 11 ~~~~~~~~~~lfV~nLp~~~te~~l~~~F~~~ 42 (349)
.+..-+...+|.|...|..++.++.++|+++|
T Consensus 12 ~~s~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 12 TATTLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp ----CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred CccccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 34556677889999999999999999999888
No 434
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=37.62 E-value=56 Score=23.64 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=35.3
Q ss_pred CCCcCCcHHHHHHHH-hcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 018875 25 GLPKDTTYATFNKHF-GKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79 (349)
Q Consensus 25 nLp~~~te~~l~~~F-~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~ 79 (349)
.++..++-+||..-. +.||.-.++..+... +.|-..+.++.++|++.
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~E--------llIpl~sQeDLDkaIel 70 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNNE--------LVIPLTTQDDLDKAVEL 70 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSSS--------SCEECCSHHHHHHHHHH
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecce--------EEEeccCHHHHHHHHHH
Confidence 466778888877666 456777777777332 67999999999999994
No 435
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=36.15 E-value=73 Score=19.38 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=36.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec---CHHHHHHHHHh
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD---SEEVVDEMLSK 167 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~---~~~~a~~Ai~~ 167 (349)
++.|.++.-......|++.+.+.-.|..+.+-.. ...+.|+|. +.+...++++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHH
Confidence 4566777666677888899988877777776543 226778875 44555666654
No 436
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=34.27 E-value=93 Score=20.01 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=40.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC----HHHHHHHHHh
Q 018875 105 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS----EEVVDEMLSK 167 (349)
Q Consensus 105 ~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~----~~~a~~Ai~~ 167 (349)
...++.|.++.-......|++.+.+.-.|..+.+-.. ...+.|+|.. .+...++|+.
T Consensus 8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 68 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDD 68 (79)
T ss_dssp EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456888899888888889999988766766666543 2377888863 4566666765
No 437
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=39.99 E-value=8.7 Score=27.51 Aligned_cols=23 Identities=13% Similarity=0.123 Sum_probs=19.2
Q ss_pred ccEEEEEecCHHHHHHHHHhCCC
Q 018875 148 RGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 148 ~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
.+.|.|.|.+.++...||++|-.
T Consensus 77 egqamirfqnsdeqrlaiqklln 99 (137)
T 2lsl_A 77 EGQAMIRFQNSDEQRLAIQKLLN 99 (137)
Confidence 56899999999999999987543
No 438
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=33.74 E-value=76 Score=22.64 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHhhccCceEEEEEEe-cCCCCCcccEEEEEec--CHHHHHHHHHhCCCc
Q 018875 116 SSVSEDELKNFFSKYGKVLEHQIIR-DHETNRSRGFGFVIFD--SEEVVDEMLSKGNMI 171 (349)
Q Consensus 116 ~~~t~e~l~~~F~~~G~v~~v~i~~-~~~~g~~~G~afV~f~--~~~~a~~Ai~~l~~~ 171 (349)
..+.+..|.++..+|+.-.+|.--. +...+.+-|.-+|++. +.++.++|++.|+..
T Consensus 30 ~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~ 88 (98)
T 3ced_A 30 STTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIER 88 (98)
T ss_dssp ESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHT
T ss_pred CccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHC
Confidence 3456777788888887533322111 1123345566778887 467788888876543
No 439
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=32.78 E-value=74 Score=26.26 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.3
Q ss_pred cceEEEEEeCCHHHHHHHHHccCcc
Q 018875 59 PRGFGFITYADPSVVDKVIEDTHII 83 (349)
Q Consensus 59 ~kG~afVef~~~~~a~~al~~~~~~ 83 (349)
.+||.|||=.+..++++|++.+..+
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhh
Confidence 5699999999999999999965533
No 440
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.36 E-value=66 Score=22.62 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHhhcc-C-ceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh
Q 018875 114 IPSSVSEDELKNFFSKY-G-KVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 114 L~~~~t~e~l~~~F~~~-G-~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
++..++..+|++.++++ + .|..|..+.... + .--|+|++....+|.....+
T Consensus 30 Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 30 VDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp ECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHHh
Confidence 45678999999988874 3 466666555422 1 22699999887766665443
No 441
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=31.88 E-value=1.3e+02 Score=21.36 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=32.5
Q ss_pred EEEcCCCCCCCHHHHHHHhh-------ccCceEEEEEEecCCCCCccc--EE-EEEecCHHHHHH
Q 018875 109 IFVGGIPSSVSEDELKNFFS-------KYGKVLEHQIIRDHETNRSRG--FG-FVIFDSEEVVDE 163 (349)
Q Consensus 109 l~V~nL~~~~t~e~l~~~F~-------~~G~v~~v~i~~~~~~g~~~G--~a-fV~f~~~~~a~~ 163 (349)
|.+-.|...++++++.++.+ +.-.|..+.+-.+.. ...++ ++ +++|+|.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 33445667777766554433 355677787777643 33333 44 458999887765
No 442
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=31.86 E-value=92 Score=19.24 Aligned_cols=55 Identities=9% Similarity=0.181 Sum_probs=37.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC---HHHHHHHHHh
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS---EEVVDEMLSK 167 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~---~~~a~~Ai~~ 167 (349)
.++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|.. .+...++|+.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCHHHHHHHHHH
Confidence 357777777666678888999888778877775442 267888864 3445555554
No 443
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=31.81 E-value=21 Score=31.15 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=27.2
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEee
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMK 52 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~ 52 (349)
...+.|+|||+.++..-|..+++....+..+.+|.
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 34678999999999999999998655566555554
No 444
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=31.80 E-value=89 Score=26.45 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=24.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEE
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQI 138 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i 138 (349)
..+.|.|||+.++...|..+++....+..+.+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~ 127 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVF 127 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEE
Confidence 45889999999999999999886543433333
No 445
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=31.59 E-value=72 Score=22.94 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=35.5
Q ss_pred CCcCCcHHHHHHHHhcC--------CCeeEEEEeec-----CCCCCcce-EEEEEeCCHHHHHHHHHccCccCCcEEE
Q 018875 26 LPKDTTYATFNKHFGKY--------GDITDSVIMKD-----RYTGQPRG-FGFITYADPSVVDKVIEDTHIINGKQVE 89 (349)
Q Consensus 26 Lp~~~te~~l~~~F~~~--------G~i~~~~i~~~-----~~~g~~kG-~afVef~~~~~a~~al~~~~~~~g~~i~ 89 (349)
|.++++++++..+.+++ |.|.++...=. +-.+..+| |.++.|..+.++.+-++....++..-|+
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr~~~~VlR 87 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNVRR 87 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHHHHTSTTEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHHHhcCCcceEE
Confidence 34566777766655444 34554332211 11233455 6888898887777777744445554443
No 446
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=31.33 E-value=1.6e+02 Score=21.78 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=36.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhh-------ccCceEEEEEEecCCC-CCccc--EE-EEEecCHHHHHHHH
Q 018875 107 KKIFVGGIPSSVSEDELKNFFS-------KYGKVLEHQIIRDHET-NRSRG--FG-FVIFDSEEVVDEML 165 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~-------~~G~v~~v~i~~~~~~-g~~~G--~a-fV~f~~~~~a~~Ai 165 (349)
+.|.+-.|...++++++.++.+ +.-.|..+.+-.+... ...++ ++ +++|+|.++.+.-+
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 3455667888888776655443 3556777777666432 23333 44 45899988876543
No 447
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=30.52 E-value=92 Score=21.19 Aligned_cols=56 Identities=9% Similarity=0.194 Sum_probs=39.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec----CHHHHHHHHHhC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD----SEEVVDEMLSKG 168 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~----~~~~a~~Ai~~l 168 (349)
.+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|. +.++..++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~------~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLEN------RSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTT------TEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 357777777666677889999988778887775542 27888885 356667777764
No 448
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=30.52 E-value=1e+02 Score=19.31 Aligned_cols=55 Identities=9% Similarity=0.184 Sum_probs=40.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec---CHHHHHHHHHh
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD---SEEVVDEMLSK 167 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~---~~~~a~~Ai~~ 167 (349)
.++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|. +.++..++|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHH
Confidence 467788888777888899999988778877775542 26778874 45666667765
No 449
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=30.46 E-value=72 Score=22.81 Aligned_cols=52 Identities=10% Similarity=0.212 Sum_probs=39.3
Q ss_pred EcCCCCCCCHHHHHHHhh-ccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 111 VGGIPSSVSEDELKNFFS-KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 111 V~nL~~~~t~e~l~~~F~-~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
|--++..+.-++|+.... .||...++..+.+ .-.|-..+.++..+||+.|+.
T Consensus 33 Ii~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 33 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHH
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhcc
Confidence 334566677788876554 6888888888765 568889999999999997543
No 450
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.13 E-value=67 Score=22.63 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCCCCcccEEEEEecC
Q 018875 132 KVLEHQIIRDHETNRSRGFGFVIFDS 157 (349)
Q Consensus 132 ~v~~v~i~~~~~~g~~~G~afV~f~~ 157 (349)
+|++|+|.+-...++-+++|-|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47888888887778899999999974
No 451
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=29.29 E-value=1e+02 Score=18.99 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=38.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC---HHHHHHHHHh
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS---EEVVDEMLSK 167 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~---~~~a~~Ai~~ 167 (349)
++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|.. .++..++|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPK------GTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTT------TEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCHHHHHHHHHH
Confidence 57778887777778899999888778877775442 267788763 4556666665
No 452
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=29.25 E-value=1.4e+02 Score=21.54 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=36.4
Q ss_pred eEEEcCCCcCCcHHHHHHHHh-------cCCCeeEEEEeecCCC-CCcce---EEEEEeCCHHHHHHHHH
Q 018875 20 KIFIGGLPKDTTYATFNKHFG-------KYGDITDSVIMKDRYT-GQPRG---FGFITYADPSVVDKVIE 78 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~-------~~G~i~~~~i~~~~~~-g~~kG---~afVef~~~~~a~~al~ 78 (349)
.|.+=.|..+++++++.++.+ +.-.|.++.+-.+... ...++ ...++|++.++.+.-+.
T Consensus 13 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~ 82 (112)
T 1q4r_A 13 HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIA 82 (112)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHhC
Confidence 344446888888887665543 2455777777665432 23333 34557899888776555
No 453
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=29.04 E-value=1.6e+02 Score=21.74 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=31.7
Q ss_pred EEEcCCCCCCCHHHHHHHh-------hccCceEEEEEEecCCCCCcccEEE-EEecCHHHHHH
Q 018875 109 IFVGGIPSSVSEDELKNFF-------SKYGKVLEHQIIRDHETNRSRGFGF-VIFDSEEVVDE 163 (349)
Q Consensus 109 l~V~nL~~~~t~e~l~~~F-------~~~G~v~~v~i~~~~~~g~~~G~af-V~f~~~~~a~~ 163 (349)
|.+=.|...++++++.++. .+.-.|..+.+-.+......--++| ++|+|.++.+.
T Consensus 24 IVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 24 TVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 4444566666666654443 3455677777776644321133554 58888887654
No 454
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=28.78 E-value=41 Score=29.16 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=26.4
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEee
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMK 52 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~ 52 (349)
...+.|+|||+.++...|.++++. ..+..+.+|.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 356899999999999999999977 5555544444
No 455
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=28.68 E-value=1.3e+02 Score=19.84 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=41.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec----CHHHHHHHHHhC
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD----SEEVVDEMLSKG 168 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~----~~~~a~~Ai~~l 168 (349)
..+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|. +.+...++|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDN------QEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTT------TEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 3468888888888888899999988778877774432 37888885 456667777653
No 456
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=27.84 E-value=55 Score=22.92 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=36.8
Q ss_pred EEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcc
Q 018875 21 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT 80 (349)
Q Consensus 21 lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~ 80 (349)
||+=-||.+++-++|++-+.+-=.+.++.+...+.. +.+. +..+.++...||+..
T Consensus 23 IiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~ykde--~~g~---~i~sD~dl~~aiqrn 77 (85)
T 1ip9_A 23 IFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLFD--GSGE---EIKTDSQVSNIIQAK 77 (85)
T ss_dssp CEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECCSS--SCCS---CCCSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceEEEEecCC--CCCC---cccCHHHHHHHHHhc
Confidence 666679999999999987754333444444443322 2222 888999999999853
No 457
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=27.49 E-value=1.5e+02 Score=21.78 Aligned_cols=57 Identities=7% Similarity=-0.038 Sum_probs=34.0
Q ss_pred EEEcCCCcCCcHHHHHHHHhc-------CCCeeEEEEeecCCCCCcce--EE-EEEeCCHHHHHHHHH
Q 018875 21 IFIGGLPKDTTYATFNKHFGK-------YGDITDSVIMKDRYTGQPRG--FG-FITYADPSVVDKVIE 78 (349)
Q Consensus 21 lfV~nLp~~~te~~l~~~F~~-------~G~i~~~~i~~~~~~g~~kG--~a-fVef~~~~~a~~al~ 78 (349)
|.+=.|..+++++++.++.+. .-.|.++.+-.+.. ...++ ++ .++|++.++.++-+.
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~~ 91 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQD 91 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHhc
Confidence 444458888888876665543 34567777666653 33333 34 456777777665444
No 458
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=27.27 E-value=1.9e+02 Score=21.35 Aligned_cols=60 Identities=10% Similarity=0.129 Sum_probs=36.9
Q ss_pred ceEEEcCCCcCCcHHHHHHHHh-------cCCCeeEEEEeecCCC-CCcce--EE-EEEeCCHHHHHHHHH
Q 018875 19 GKIFIGGLPKDTTYATFNKHFG-------KYGDITDSVIMKDRYT-GQPRG--FG-FITYADPSVVDKVIE 78 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~-------~~G~i~~~~i~~~~~~-g~~kG--~a-fVef~~~~~a~~al~ 78 (349)
+-|.+=.|..+++++++.++.+ ++-.|.++.+-.+... ...++ ++ .++|++.++.++.+.
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~ 92 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYAV 92 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHHc
Confidence 3344446888888877665543 3556777777666531 33333 34 457888887766555
No 459
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=27.03 E-value=83 Score=22.98 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=23.1
Q ss_pred cccEEEEEecCHHHHHHHHHhCCCccc
Q 018875 147 SRGFGFVIFDSEEVVDEMLSKGNMIDM 173 (349)
Q Consensus 147 ~~G~afV~f~~~~~a~~Ai~~l~~~~~ 173 (349)
.+||-|||=.++.++.+|++.+.+...
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v~~ 76 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNLRL 76 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccceec
Confidence 588999999999999999997766543
No 460
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=27.01 E-value=1.2e+02 Score=18.95 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=39.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec----CHHHHHHHHHh
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD----SEEVVDEMLSK 167 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~----~~~~a~~Ai~~ 167 (349)
..++.|.++.-......|+..+.+.-.|..+.+-.. ...+.|+|. +.++..++++.
T Consensus 7 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 66 (76)
T 1opz_A 7 EIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEK 66 (76)
T ss_dssp EEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346888888887778889999988877777776543 236778885 34556666654
No 461
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=26.97 E-value=1.1e+02 Score=18.60 Aligned_cols=54 Identities=11% Similarity=0.178 Sum_probs=39.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec----CHHHHHHHHHh
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD----SEEVVDEMLSK 167 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~----~~~~a~~Ai~~ 167 (349)
++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|. +.+...++++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKK------EKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 57788888777888899999988778777765432 26788886 34556666665
No 462
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=26.94 E-value=1.1e+02 Score=22.15 Aligned_cols=43 Identities=23% Similarity=0.163 Sum_probs=26.8
Q ss_pred CHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHH
Q 018875 119 SEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 165 (349)
Q Consensus 119 t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai 165 (349)
-+.+|.+.+..+| |.+..|..+.+++ .=|++++.++ +.+.+++
T Consensus 25 vWPEv~~~L~~aG-i~~ysIfl~~~~~--~LF~~~E~~d-~~~~~~~ 67 (104)
T 1x8d_A 25 IWPELEAVLKSHG-AHNYAIYLDKARN--LLFAMVEIES-EERWNAV 67 (104)
T ss_dssp CCHHHHHHHHHTT-EEEEEEEEETTTT--EEEEEEEESC-HHHHHHG
T ss_pred cCHHHHHHHHHcC-CeEEEEEEECCCC--eEEEEEEEcC-HHhHHhc
Confidence 3567888888887 5566666553332 2289999988 3333333
No 463
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=26.65 E-value=1.6e+02 Score=21.29 Aligned_cols=50 Identities=10% Similarity=0.245 Sum_probs=27.3
Q ss_pred CcCCcHHHHHHHHhcC-CCeeEEEEe---e-cCCCCCcceEEEEEeCCHHHHHHHH
Q 018875 27 PKDTTYATFNKHFGKY-GDITDSVIM---K-DRYTGQPRGFGFITYADPSVVDKVI 77 (349)
Q Consensus 27 p~~~te~~l~~~F~~~-G~i~~~~i~---~-~~~~g~~kG~afVef~~~~~a~~al 77 (349)
..+.+..+|++.+.+. ..-.++.++ + .--.+++.|||.| |.|.+.|++.-
T Consensus 27 ~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 27 GSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 3567888888887543 322222222 2 2224567777755 66666655443
No 464
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=26.19 E-value=53 Score=25.66 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=27.7
Q ss_pred cCCcHHHHHHHHhc-CCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHH
Q 018875 28 KDTTYATFNKHFGK-YGDITDSVIMKDRY----TGQPRGFGFITYADPSVVDK 75 (349)
Q Consensus 28 ~~~te~~l~~~F~~-~G~i~~~~i~~~~~----~g~~kG~afVef~~~~~a~~ 75 (349)
.+.+..||++.+.. |..-.+++++..-. .+++.|||.| |.+.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 46788889888865 33323333333322 3567777776 666666654
No 465
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=26.11 E-value=1.2e+02 Score=18.73 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=38.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec----CHHHHHHHHHhC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD----SEEVVDEMLSKG 168 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~----~~~~a~~Ai~~l 168 (349)
.+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|. +.+...++|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAE------GTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 357788887666677788888888777777765432 26778876 345566666653
No 466
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=26.04 E-value=73 Score=22.48 Aligned_cols=63 Identities=8% Similarity=0.173 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHhh-ccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEEEeCC
Q 018875 113 GIPSSVSEDELKNFFS-KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAE 184 (349)
Q Consensus 113 nL~~~~t~e~l~~~F~-~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v~~a~ 184 (349)
-++..+.-++|+.... .||...++..+.+ .-.|-..+.++..+|++.|+... .-+.|+|-+..
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~ 82 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSS-SMKSLRILLLS 82 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCc-cccceEEEEEc
Confidence 3556677777776554 6888888877755 46788999999999999754332 22334444433
No 467
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=25.62 E-value=1.5e+02 Score=21.74 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=33.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-------cCceEEEEEEecCCCCCccc--EE-EEEecCHHHHHHH
Q 018875 108 KIFVGGIPSSVSEDELKNFFSK-------YGKVLEHQIIRDHETNRSRG--FG-FVIFDSEEVVDEM 164 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~-------~G~v~~v~i~~~~~~g~~~G--~a-fV~f~~~~~a~~A 164 (349)
.|.+-.|...++++++.++.+. .-.|..+.+-.+.. ...++ ++ +++|+|.++.+.-
T Consensus 24 HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y 89 (116)
T 3bgu_A 24 HIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAY 89 (116)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHH
Confidence 3555567778888776655443 34566776666543 33333 45 4588888877643
No 468
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=25.40 E-value=1.6e+02 Score=21.32 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=26.9
Q ss_pred cCCcHHHHHHHHhcC-CC---eeEEE-EeecCCCCCcceEEEEEeCCHHHHHH
Q 018875 28 KDTTYATFNKHFGKY-GD---ITDSV-IMKDRYTGQPRGFGFITYADPSVVDK 75 (349)
Q Consensus 28 ~~~te~~l~~~F~~~-G~---i~~~~-i~~~~~~g~~kG~afVef~~~~~a~~ 75 (349)
.+.+..+|++.+.+. .. +.-|. +...--.+++.|||.| |.|.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 567888888887543 22 11122 2222224677788865 667666654
No 469
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=25.22 E-value=89 Score=22.63 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCCCCcccEEEEEecC
Q 018875 132 KVLEHQIIRDHETNRSRGFGFVIFDS 157 (349)
Q Consensus 132 ~v~~v~i~~~~~~g~~~G~afV~f~~ 157 (349)
+|++|+|.+-...++-+++|-|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788888877778899999999974
No 470
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=24.98 E-value=1.3e+02 Score=18.86 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=38.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC----HHHHHHHHHhC
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS----EEVVDEMLSKG 168 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~----~~~a~~Ai~~l 168 (349)
++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|.. .+...++|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 56777777666677888888888778777765442 267888853 46666777653
No 471
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=24.51 E-value=74 Score=20.45 Aligned_cols=55 Identities=11% Similarity=0.153 Sum_probs=37.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec----CHHHHHHHHHh
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD----SEEVVDEMLSK 167 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~----~~~~a~~Ai~~ 167 (349)
.++.|.++.-......|++.+.+.-.|..+.+-.. ...+.|+|. +.+...++|+.
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 63 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIRE 63 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 46778888777778889999988766766655332 236788885 34556666665
No 472
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=24.42 E-value=1.3e+02 Score=18.56 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=39.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec----CHHHHHHHHHhC
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD----SEEVVDEMLSKG 168 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~----~~~~a~~Ai~~l 168 (349)
.++.|.++.-......|+..+.+.-.|..+.+-... ..+.|+|. +.+...++|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFET------RQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 357778887777788899999988778777765432 26788885 345666777653
No 473
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=24.42 E-value=1.3e+02 Score=23.91 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=21.8
Q ss_pred eEEEEEeCCHHHHHHHHHccCccCCcEEEEe
Q 018875 61 GFGFITYADPSVVDKVIEDTHIINGKQVEIK 91 (349)
Q Consensus 61 G~afVef~~~~~a~~al~~~~~~~g~~i~v~ 91 (349)
--.||.|+++++|.++++....+ +.|.|-
T Consensus 82 ~~v~il~k~p~d~~~lve~Gv~i--~~vNvG 110 (168)
T 3eye_A 82 QKIFLICRTPQTVRKLVEGGIDL--KDVNVG 110 (168)
T ss_dssp CCEEEEESSHHHHHHHHHTTCCC--CEEEEC
T ss_pred ceEEEEECCHHHHHHHHHcCCCC--CEEEEC
Confidence 45899999999999999965444 344443
No 474
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=24.36 E-value=17 Score=34.50 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.2
Q ss_pred CceEEEcCCCcCCcHHHHHHHHhc
Q 018875 18 PGKIFIGGLPKDTTYATFNKHFGK 41 (349)
Q Consensus 18 ~~~lfV~nLp~~~te~~l~~~F~~ 41 (349)
..+|.|..||+.++.+.|.+.+.+
T Consensus 251 ~~~IvITElPy~v~~~~lie~I~~ 274 (496)
T 2nov_A 251 KEQIVITEIPYEINKANLVKKIDD 274 (496)
T ss_dssp CEEEEEEECCTTCCHHHHHHHTTH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHH
Confidence 468999999999999998886654
No 475
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=24.35 E-value=26 Score=19.02 Aligned_cols=10 Identities=50% Similarity=1.188 Sum_probs=7.3
Q ss_pred CCCCCCcCCC
Q 018875 338 SGSSRYHPYA 347 (349)
Q Consensus 338 ~~~~~~~~~~ 347 (349)
+++.||+||+
T Consensus 16 rggnrfepY~ 25 (30)
T 2ot8_C 16 RGGNRFEPYA 25 (30)
T ss_pred cCCccccccc
Confidence 4677888884
No 476
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=24.19 E-value=61 Score=27.61 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=24.4
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEe
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIM 51 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~ 51 (349)
..+.|.|||+.++...|..+++..-.+..+.+|
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 368899999999999998888754344444443
No 477
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=24.14 E-value=85 Score=21.54 Aligned_cols=50 Identities=16% Similarity=0.320 Sum_probs=29.6
Q ss_pred CCHHHHHHHhhccCc-eEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCCcccCCeEEEE
Q 018875 118 VSEDELKNFFSKYGK-VLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180 (349)
Q Consensus 118 ~t~e~l~~~F~~~G~-v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~~~~~g~~i~v 180 (349)
-|+++|+..++.|-. ..+| -.+|...+.+...+|.+..+..+|+-+.-+|
T Consensus 33 ktedelkkyleefrkesqni-------------kvlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNI-------------KVLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSE-------------EEEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHHHHHhhccCe-------------EEEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 378999988777621 1111 2234445667777777765666666555444
No 478
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=23.95 E-value=1.4e+02 Score=18.65 Aligned_cols=56 Identities=9% Similarity=0.173 Sum_probs=39.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC----HHHHHHHHHh
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS----EEVVDEMLSK 167 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~----~~~a~~Ai~~ 167 (349)
..++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|.. .+...++++.
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALAT------NKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTT------TEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 3468888988888888899999988778877775432 277888864 3344555554
No 479
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=23.91 E-value=1.6e+02 Score=21.57 Aligned_cols=48 Identities=6% Similarity=0.065 Sum_probs=27.3
Q ss_pred cCCcHHHHHHHHhcC-CCeeEEEEeec----CCCCCcceEEEEEeCCHHHHHHH
Q 018875 28 KDTTYATFNKHFGKY-GDITDSVIMKD----RYTGQPRGFGFITYADPSVVDKV 76 (349)
Q Consensus 28 ~~~te~~l~~~F~~~-G~i~~~~i~~~----~~~g~~kG~afVef~~~~~a~~a 76 (349)
.+.+..+|++.+.+. ..-.++.++.. --.+++.|||.| |.|.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 467888888877543 32222222222 123567788865 6777766653
No 480
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.68 E-value=1e+02 Score=22.57 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=20.5
Q ss_pred ceEEEEEEecCCCCCcccEEEEEecC
Q 018875 132 KVLEHQIIRDHETNRSRGFGFVIFDS 157 (349)
Q Consensus 132 ~v~~v~i~~~~~~g~~~G~afV~f~~ 157 (349)
+|++|+|.+-...++-+++|-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46778887777778888999999864
No 481
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=23.33 E-value=35 Score=30.93 Aligned_cols=23 Identities=0% Similarity=-0.002 Sum_probs=20.0
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhc
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGK 41 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~ 41 (349)
..+.|+|||+.++..-|..+|+.
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 45899999999999999888874
No 482
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=23.20 E-value=75 Score=31.65 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=24.3
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcC---CCeeEEEEeecC
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKY---GDITDSVIMKDR 54 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~---G~i~~~~i~~~~ 54 (349)
.+|.|..||+.++.+.|.+.+.+. ..|..|.-++|.
T Consensus 224 ~~ivITElPy~v~~~~lie~I~~l~~~kki~~I~d~rDe 262 (716)
T 1zvu_A 224 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDE 262 (716)
T ss_dssp TEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEEC
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHhcCCCccccchhhc
Confidence 589999999999998887766432 233334444444
No 483
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=23.14 E-value=2.1e+02 Score=20.40 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=35.8
Q ss_pred eEEEcCCCcCCcHHHHHHHHh-------cCCCeeEEEEeecCCC---CCcce--E-EEEEeCCHHHHHHHHH
Q 018875 20 KIFIGGLPKDTTYATFNKHFG-------KYGDITDSVIMKDRYT---GQPRG--F-GFITYADPSVVDKVIE 78 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~-------~~G~i~~~~i~~~~~~---g~~kG--~-afVef~~~~~a~~al~ 78 (349)
.|.+=.|..+++++++.++.+ +.-.|.++.+=.+... ...++ + ..++|++.++.+.-+.
T Consensus 11 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~ 82 (108)
T 1tr0_A 11 HTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEYLD 82 (108)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHHHT
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHHhC
Confidence 344445888888887665543 3456777777666432 33333 3 4457888887765554
No 484
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=22.68 E-value=69 Score=23.22 Aligned_cols=50 Identities=8% Similarity=0.234 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHhh-ccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCCC
Q 018875 113 GIPSSVSEDELKNFFS-KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNM 170 (349)
Q Consensus 113 nL~~~~t~e~l~~~F~-~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~~ 170 (349)
.++..+.-++|+.... .||...++..+.+ .-.|-..+.++..+|++.|+.
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDr 96 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR 96 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhcc
Confidence 4556677777776554 6787777777755 457888999999999997543
No 485
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.53 E-value=1.6e+02 Score=20.50 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=37.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec-CHHHHHHHHHhC
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD-SEEVVDEMLSKG 168 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~-~~~~a~~Ai~~l 168 (349)
+|.|. +.-......|++.+.+.--|..+.+-... ..+.|++. +.++..++|+.+
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHHh
Confidence 56666 66555678889999988778777775442 26777774 566777777753
No 486
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=22.51 E-value=74 Score=19.83 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=33.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHh
Q 018875 108 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK 167 (349)
Q Consensus 108 ~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 167 (349)
++.|.++.-......|++.+.+. .|..+.+-.. ...+.|++...+...++++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 45566665555567788888877 7777666543 22778888765445556654
No 487
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=22.49 E-value=2.4e+02 Score=20.83 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=76.2
Q ss_pred eEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHccCccCCcEEEEeecCC
Q 018875 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYAD----PSVVDKVIEDTHIINGKQVEIKRTIP 95 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~----~~~a~~al~~~~~~~g~~i~v~~~~~ 95 (349)
++.|.++.-..-...|...+...-.|.++.+-... ..+.|.|.. .++..+++++.- ..+.
T Consensus 9 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G----~~~~------ 72 (151)
T 1p6t_A 9 AMQVSGMTCAACAARIEKGLKRMPGVTDANVNLAT------ETVNVIYDPAETGTAAIQEKIEKLG----YHVV------ 72 (151)
T ss_dssp EEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGG------TEEEEEECTTTSCHHHHHHHHHHHT----CEEC------
T ss_pred EEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccC------CEEEEEEcCCcCCHHHHHHHHHHcC----Cccc------
Confidence 46777765544456688888887777766654432 246677753 344444554221 1110
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEec----CHHHHHHHHHhC
Q 018875 96 KGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFD----SEEVVDEMLSKG 168 (349)
Q Consensus 96 ~~~~~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~----~~~~a~~Ai~~l 168 (349)
....+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|. +.++..++|+.+
T Consensus 73 --------~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 73 --------TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFAL------ETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp --------CEEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred --------ccccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 023468888998888889999999988778777665432 27888886 466777777663
No 488
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=22.36 E-value=1e+02 Score=26.30 Aligned_cols=130 Identities=11% Similarity=0.075 Sum_probs=65.8
Q ss_pred CCcCCcHHHHHHHHhcCCCeeEEEEeecCCCC------CcceEEEEEeCCHHHHHHHHHccCccCCcEEEEeecCCCCCC
Q 018875 26 LPKDTTYATFNKHFGKYGDITDSVIMKDRYTG------QPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSG 99 (349)
Q Consensus 26 Lp~~~te~~l~~~F~~~G~i~~~~i~~~~~~g------~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~~~~~~~~ 99 (349)
||..++++||+.+-+....-..+.++.++.+. .+.-+|+|--.-+++..+.+++...+ ..++...+...-.-
T Consensus 75 vp~~~~d~El~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgV--eV~~~tIags~lVG 152 (248)
T 4a18_J 75 VPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGV--EVFRTTIANNVLVG 152 (248)
T ss_dssp ECTTCCHHHHHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTC--EEEECCBTTBSCHH
T ss_pred eCCcCCHHHHHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCC--cEEEEEcCCcceeE
Confidence 58889999988775444333345555554331 12347888877777777777732111 11111111100000
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCceE-E------------EEEEecCCCCCcccEEEEEecCHHHHHHHHH
Q 018875 100 QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVL-E------------HQIIRDHETNRSRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 100 ~~~~~~~~~l~V~nL~~~~t~e~l~~~F~~~G~v~-~------------v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 166 (349)
..--..++-+. +++.+++++|+++-+-++.-. . .-+..++ -|||..++.....+.|+
T Consensus 153 s~~v~Nn~G~L---Vhp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~-------GalVg~~tT~~El~~Ie 222 (248)
T 4a18_J 153 TYCVINNRGGL---VHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDW-------AAFCGLDTTSTEISVVE 222 (248)
T ss_dssp HHEEECSSCEE---ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEETT-------EEEEETTCCHHHHHHHH
T ss_pred EEEEEeCCeEE---ECCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeCC-------eEEECCCCCHHHHHHHH
Confidence 00000112233 357788888777655443211 1 1233332 78998887766666665
Q ss_pred h
Q 018875 167 K 167 (349)
Q Consensus 167 ~ 167 (349)
.
T Consensus 223 ~ 223 (248)
T 4a18_J 223 N 223 (248)
T ss_dssp H
T ss_pred H
Confidence 4
No 489
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=22.21 E-value=1.3e+02 Score=22.22 Aligned_cols=49 Identities=31% Similarity=0.403 Sum_probs=32.4
Q ss_pred cceEEEEEeCCHH-----HHHHHHHccCccCCcEEEEeecCCCCCCCCCCCCCCeEEE--cCCCCCCCHHHHHHHhhccC
Q 018875 59 PRGFGFITYADPS-----VVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFV--GGIPSSVSEDELKNFFSKYG 131 (349)
Q Consensus 59 ~kG~afVef~~~~-----~a~~al~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~l~V--~nL~~~~t~e~l~~~F~~~G 131 (349)
..||.||++...+ ++...+.+...+.+ || .+-|..++++++..++....
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~gV~g------------------------fvg~g~~P~pi~~~ev~~i~~~~~ 116 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPGITG------------------------FVGAGMRPVPLSPDEVRHILEVSG 116 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTTCCC------------------------CCCSSSSSCBCCHHHHHHHHHHHT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCCceE------------------------EeCCCCEEeECCHHHHHHHHHHHh
Confidence 6799999998876 66666664332111 11 23466789999988877643
No 490
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.90 E-value=1.2e+02 Score=21.37 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.3
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCC
Q 018875 44 DITDSVIMKDRYTGQPRGFGFITYAD 69 (349)
Q Consensus 44 ~i~~~~i~~~~~~g~~kG~afVef~~ 69 (349)
+|++|+|.+-...++-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888888887778899999999975
No 491
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.53 E-value=29 Score=23.07 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=8.0
Q ss_pred cEEEEEecCH
Q 018875 149 GFGFVIFDSE 158 (349)
Q Consensus 149 G~afV~f~~~ 158 (349)
..|+|.|+|.
T Consensus 38 ~~ClV~FeD~ 47 (68)
T 2e5p_A 38 EVCLVQFEDD 47 (68)
T ss_dssp TEEEEEETTT
T ss_pred cEEEEEEccC
Confidence 3899999873
No 492
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=21.45 E-value=1.7e+02 Score=22.30 Aligned_cols=121 Identities=9% Similarity=-0.015 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccC---ccCCcEEEEeecCCCCCCCCCCCCCCe
Q 018875 32 YATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH---IINGKQVEIKRTIPKGSGQSKDFKTKK 108 (349)
Q Consensus 32 e~~l~~~F~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~---~~~g~~i~v~~~~~~~~~~~~~~~~~~ 108 (349)
+.+|..+++. .+..+.... |+|+.+.........++... .-++..|.+.........-..+..-+.
T Consensus 5 ~~~l~~ll~~----m~l~l~~~~-------y~~~~l~~~~~~~~~l~~~~i~~t~eelSvV~~~~~a~~~~l~~~~~wr~ 73 (133)
T 1zvp_A 5 IKSLELLLQS----MSPELMAGD-------YVFCTVNGALSDYLSLEPIATFREPEGLTLVLEAEKAQQAGLESSALFSL 73 (133)
T ss_dssp SHHHHHHHHT----CEEEECSSC-------EEEEEECSCGGGGGGGCCSEEEEETTEEEEEEEHHHHHHTTCCCCSCEEE
T ss_pred cCCHHHHHhc----CCEEECCCc-------EEEEEecCCccCCCCCcceEEEEcCCcEEEEEchHhccccCCccCCCeEE
Confidence 5677888876 244444443 89999886443221111111 223444444432211111112223344
Q ss_pred EEEcC-CCCCCC--HHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC
Q 018875 109 IFVGG-IPSSVS--EDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (349)
Q Consensus 109 l~V~n-L~~~~t--~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 169 (349)
|.|.. ++.+.+ -..|-..+.+.+.-..+.---+ .-|-||.-++.+.|.+||+.|.
T Consensus 74 i~l~~~~~l~~vGi~a~is~~LA~agIsif~iSty~------tDhIlVp~~~~~~A~~~L~~l~ 131 (133)
T 1zvp_A 74 ITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYY------HDHIFVQKEKAQQALQALGEFA 131 (133)
T ss_dssp EEEECCC--CCSCHHHHHHHHHHHTTCCCEEEECSS------CEEEEEEGGGHHHHHHHHTTSC
T ss_pred EEEeccCCccHHHHHHHHHHHHHhCCCCcEEEEecc------ccEEEEehhHHHHHHHHHHHHh
Confidence 55532 444432 2445555555553322221111 1289999999999999998764
No 493
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=21.22 E-value=2.3e+02 Score=20.24 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=49.1
Q ss_pred cCCCcCCcHHHHHHHH----------hcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHccCccCCcEEEEeec
Q 018875 24 GGLPKDTTYATFNKHF----------GKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT 93 (349)
Q Consensus 24 ~nLp~~~te~~l~~~F----------~~~G~i~~~~i~~~~~~g~~kG~afVef~~~~~a~~al~~~~~~~g~~i~v~~~ 93 (349)
-+||.+++.+++.++- ..-|.+..++-+. ++-..++..+-+|.++..+.|..+..+.-.+|+|...
T Consensus 9 V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv~----G~y~nisIfdv~s~~eLh~iL~~LPLfpym~i~VtpL 84 (96)
T 1mli_A 9 VKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRIA----GHYANYSVFDVPSVEALHDTLMQLPLFPYMDIEVDGL 84 (96)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEec----CCccEEEEEEcCCHHHHHHHHHhCCCCceEEEEEEEc
Confidence 3689888888866553 3447777777664 4455688888999999988888877777677777764
Q ss_pred CC
Q 018875 94 IP 95 (349)
Q Consensus 94 ~~ 95 (349)
..
T Consensus 85 ~~ 86 (96)
T 1mli_A 85 CR 86 (96)
T ss_pred cc
Confidence 43
No 494
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.12 E-value=55 Score=27.80 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=25.9
Q ss_pred ceEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEee
Q 018875 19 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMK 52 (349)
Q Consensus 19 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~ 52 (349)
..+.|.|||+.++..-|..+++....+..+.+|.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 4588999999999999999998754455544444
No 495
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=21.03 E-value=33 Score=29.38 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=25.8
Q ss_pred eEEEcCCCcCCcHHHHHHHHhcCCCeeEEEEee
Q 018875 20 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMK 52 (349)
Q Consensus 20 ~lfV~nLp~~~te~~l~~~F~~~G~i~~~~i~~ 52 (349)
...|.|||+.++.+.|..+++....+..+.+|.
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 458999999999999999998765565555554
No 496
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=20.94 E-value=1.6e+02 Score=20.64 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=16.6
Q ss_pred cccEEEEEecCHHHHHHHHH
Q 018875 147 SRGFGFVIFDSEEVVDEMLS 166 (349)
Q Consensus 147 ~~G~afV~f~~~~~a~~Ai~ 166 (349)
..-...|+|.|.++|+++.+
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 34478899999999999876
No 497
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.74 E-value=50 Score=28.61 Aligned_cols=34 Identities=9% Similarity=0.300 Sum_probs=26.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEe
Q 018875 106 TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIR 140 (349)
Q Consensus 106 ~~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~ 140 (349)
...+.|.|||+.++...|.++++. ..+..+.++.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 356899999999999999999987 5554444443
No 498
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=20.71 E-value=83 Score=31.05 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCCCCCCHHHHHHHhh----ccCceEEEEEEecCCCCCcccEEEEEecCHHHHHHHHHhCC
Q 018875 113 GIPSSVSEDELKNFFS----KYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 169 (349)
Q Consensus 113 nL~~~~t~e~l~~~F~----~~G~v~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 169 (349)
.++.+.+--||..+|- .+|.|+++.|..... ...+.+++|.|.+.++|.+|+.++.
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHHH
Confidence 3445555557888884 589999988766533 2334478999999999999887643
No 499
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=20.68 E-value=2.3e+02 Score=24.41 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=37.9
Q ss_pred ceEEEcCCCc-CCcHHHHHHHHhcC-------CCeeEEEEeecCCCCCcceEEEEE
Q 018875 19 GKIFIGGLPK-DTTYATFNKHFGKY-------GDITDSVIMKDRYTGQPRGFGFIT 66 (349)
Q Consensus 19 ~~lfV~nLp~-~~te~~l~~~F~~~-------G~i~~~~i~~~~~~g~~kG~afVe 66 (349)
..|-|..++. ++++|+|...+++| .++-.+.+...++++++--|.|+.
T Consensus 167 TIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~i 222 (270)
T 4a8j_B 167 TIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFIV 222 (270)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEEE
T ss_pred heEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEEE
Confidence 5677887765 67999999999987 356677777778889988888874
No 500
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=20.63 E-value=1.7e+02 Score=18.33 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=39.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCceEEEEEEecCCCCCcccEEEEEecC--HHHHHHHHHh
Q 018875 107 KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDS--EEVVDEMLSK 167 (349)
Q Consensus 107 ~~l~V~nL~~~~t~e~l~~~F~~~G~v~~v~i~~~~~~g~~~G~afV~f~~--~~~a~~Ai~~ 167 (349)
.++.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|.. .+...++|+.
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~------~~~~v~~~~~~~~~i~~~i~~ 61 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFAT------EKLVVDADNDIRAQVESALQK 61 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTT------TEEEEEESSCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCHHHHHHHHHH
Confidence 357788888777788899999988778777775442 267788875 3445555654
Done!