BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018876
(349 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 563 bits (1450), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/350 (74%), Positives = 303/350 (86%), Gaps = 1/350 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGKCKQPEKAHELFQ M++EGC N + +TAL+SAY RSG FD AF+LLE MK++ +CQ
Sbjct: 159 MLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQ 218
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV+TYSILIKS L+ FAFDKVQ LLSDM QGIRPNT+TYNTLIDAYG+AKMF EME T
Sbjct: 219 PDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMEST 278
Query: 121 LVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L++ML ED C+PD WTMN TLRAFG +GQI+ ME CYEKFQS+GI+P+I TFNILLDSYG
Sbjct: 279 LIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYG 338
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K+G+++KMSAVMEYMQKYHYSWTIVTYN+VIDAFGRAGDLKQMEYLFRLM+SERI PSCV
Sbjct: 339 KSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCV 398
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
TLCSLVRAYG A K +K+G VLRFI+NSDI LD VFFNCLVDAYGR++ FAEMKGVLE+M
Sbjct: 399 TLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELM 458
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
+++G KPDK+TYRTMV+AY +GM H KE +VE + E + +K+PDF
Sbjct: 459 EKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVVESVGEAQVVVKKPDF 508
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 116/230 (50%), Gaps = 2/230 (0%)
Query: 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK 154
+PN Y LI G+ K + +M++E C + + A+ SG+ D
Sbjct: 147 KPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFT 206
Query: 155 CYEKFQSA-GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAF 213
E+ +S+ QP ++T++IL+ S+ + F+K+ ++ M++ +TYN +IDA+
Sbjct: 207 LLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAY 266
Query: 214 GRAGDLKQME-YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD 272
G+A +ME L +++ + KP T+ S +RA+G G+ E + + +S I +
Sbjct: 267 GKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPN 326
Query: 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322
FN L+D+YG+ + +M V+E MQ+ VTY ++ A+ G
Sbjct: 327 IRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAG 376
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 332 bits (850), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 158/332 (47%), Positives = 232/332 (69%), Gaps = 1/332 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+LG CKQP++A LF+ M+ EG +T+L+S YG+S L DKAFS LE+MK+ DC+
Sbjct: 103 VLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCK 162
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV T+++LI C K FD V++++ +MS G+ +TVTYNT+ID YG+A MF EME
Sbjct: 163 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV 222
Query: 121 LVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L M+ + D PDV T+N + ++GN + ME Y +FQ G+QP I TFNIL+ S+G
Sbjct: 223 LADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFG 282
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
KAG ++KM +VM++M+K +S T VTYNIVI+ FG+AG +++M+ +FR M+ + +KP+ +
Sbjct: 283 KAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSI 342
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T CSLV AY AG K+ SVLR I NSD++LDT FFNC+++AYG+ A MK + M
Sbjct: 343 TYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM 402
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQ 331
++R CKPDK+T+ TM++ Y+ +G+ + +E +
Sbjct: 403 EERKCKPDKITFATMIKTYTAHGIFDAVQELE 434
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 104/189 (55%), Gaps = 4/189 (2%)
Query: 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT 65
++ E + FQ M G + +F L+ ++G++G++ K S+++ M+ V T
Sbjct: 253 RKMESWYSRFQLM---GVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTV-T 308
Query: 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125
Y+I+I++ KA +K+ + M QG++PN++TY +L++AY +A + +++ L +++
Sbjct: 309 YNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIV 368
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185
+ D D NC + A+G +G + TM++ Y + + +P TF ++ +Y G F+
Sbjct: 369 NSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFD 428
Query: 186 KMSAVMEYM 194
+ + + M
Sbjct: 429 AVQELEKQM 437
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 72/266 (27%)
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
EP T + GN Q D +E S G++P+I+ + L+ YGK+ +K +
Sbjct: 91 EPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFS 150
Query: 190 VMEYMQKYH------YSWTI------------------------------VTYNIVIDAF 213
+EYM+ +++T+ VTYN +ID +
Sbjct: 151 TLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGY 210
Query: 214 GRAGDLKQMEYLF--------------------------RLMRSER----------IKPS 237
G+AG ++ME + R MR ++P
Sbjct: 211 GKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPD 270
Query: 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297
T L+ ++G AG +K+ SV+ F++ L TV +N +++ +G+ +M V
Sbjct: 271 ITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFR 330
Query: 298 VMQQRGCKPDKVTYRTMVRAYSTNGM 323
M+ +G KP+ +TY ++V AYS G+
Sbjct: 331 KMKYQGVKPNSITYCSLVNAYSKAGL 356
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 3/167 (1%)
Query: 175 LDSYGKAGHFEKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233
LD K ++ + ++K H Y TY + G Q LF +M SE
Sbjct: 65 LDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEG 124
Query: 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN-SDIMLDTVFFNCLVDAYGRLKCFAEM 292
+KP+ SL+ YG + +K S L ++ + SD D F L+ +L F +
Sbjct: 125 LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLV 184
Query: 293 KGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDLVEKMD 338
K ++ M G VTY T++ Y GM + D++E D
Sbjct: 185 KSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGD 231
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
GK + EK ++F+ M +G N+ ++ +L++AY ++GL K S+L + N+ D
Sbjct: 316 FGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNS-DVVL 374
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
D ++ +I + +A ++ L M + +P+ +T+ T+I Y +F ++
Sbjct: 375 DTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELE 434
Query: 122 VKMLSEDCEPDV 133
+M+S D+
Sbjct: 435 KQMISSGENLDI 446
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 297 bits (760), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/346 (44%), Positives = 209/346 (60%), Gaps = 1/346 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+LGK QP +A +LF M++EG + + +TALL+AY RS L D AFS+L+ MK+ P CQ
Sbjct: 133 LLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQ 192
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV TYS L+K+C+ A FD V +L +M + I PNTVT N ++ YGR F +ME
Sbjct: 193 PDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKV 252
Query: 121 LVKML-SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L ML S C+PDVWTMN L FGN G+ID ME YEKF++ GI+P TFNIL+ SYG
Sbjct: 253 LSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYG 312
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K ++KMS+VMEYM+K + WT TYN +I+AF GD K ME F MRSE +K
Sbjct: 313 KKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTK 372
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T C L+ Y +AG K+ S ++ +I +T F+N ++ A + EM+ V M
Sbjct: 373 TFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRM 432
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMK 345
++R C D T+ MV AY GM + + +K+ + +A K
Sbjct: 433 KERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRTVATK 478
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 135/281 (48%), Gaps = 2/281 (0%)
Query: 45 KAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL 104
+A + + ++ QP TY L+ K+ ++ Q L +M +G+ P Y L
Sbjct: 106 QALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTAL 165
Query: 105 IDAYGRAKMFAEMELTLVKMLS-EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163
+ AY R+ + + L KM S C+PDV+T + L+A ++ Q D ++ Y++
Sbjct: 166 LAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERL 225
Query: 164 IQPSINTFNILLDSYGKAGHFEKMSAVM-EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222
I P+ T NI+L YG+ G F++M V+ + + + T NI++ FG G + M
Sbjct: 226 ITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMM 285
Query: 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282
E + R+ I+P T L+ +YG +K+ SV+ ++ + T +N +++A
Sbjct: 286 ESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEA 345
Query: 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323
+ + M+ + M+ G K D T+ ++ Y+ G+
Sbjct: 346 FADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGL 386
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 188/385 (48%), Gaps = 40/385 (10%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+LG+ +K E+F M +G + S+TAL++AYGR+G ++ + LL+ MKN
Sbjct: 150 LLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNE-KIS 208
Query: 61 PDVNTYSILIKSCLKA-FAFDKVQALLSDMSTQGIRPNTVTYNTLIDA------------ 107
P + TY+ +I +C + ++ + L ++M +GI+P+ VTYNTL+ A
Sbjct: 209 PSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEM 268
Query: 108 -----------------------YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144
+G+ + ++ L +M S PD+ + N L A+
Sbjct: 269 VFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYA 328
Query: 145 NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV 204
SG I + + Q+AG P+ NT+++LL+ +G++G ++ + + M+ +
Sbjct: 329 KSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAA 388
Query: 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264
TYNI+I+ FG G K++ LF M E I+P T ++ A G G E +L+++
Sbjct: 389 TYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYM 448
Query: 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324
+DI+ + + +++A+G+ + E M + G P T+ +++ +++ G+
Sbjct: 449 TANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGL- 507
Query: 325 NHAKEFQDLVEKMDETCLAMKRPDF 349
KE + ++ ++ ++ + R F
Sbjct: 508 --VKESEAILSRLVDSGIPRNRDTF 530
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 154/341 (45%), Gaps = 11/341 (3%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
++A +F+ M D G + +++ L+ +G+ +K LL M + PD+ +Y++
Sbjct: 264 DEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSL-PDITSYNV 322
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
L+++ K+ + + + M G PN TY+ L++ +G++ + ++ ++M S +
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
+PD T N + FG G + + I+P + T+ ++ + GK G E
Sbjct: 383 TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDAR 442
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
+++YM + Y VI+AFG+A ++ F M PS T SL+ ++
Sbjct: 443 KILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSF 502
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
G ++ ++L + +S I + FN ++AY + F E M++ C PD+
Sbjct: 503 ARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDE 562
Query: 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
T ++ YS F LV++ E MK D
Sbjct: 563 RTLEAVLSVYS----------FARLVDECREQFEEMKASDI 593
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 148/336 (44%), Gaps = 4/336 (1%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
GK ++ EK +L M G + S+ LL AY +SG +A + M+ C P
Sbjct: 292 FGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ-AAGCTP 350
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
+ NTYS+L+ ++ +D V+ L +M + P+ TYN LI+ +G F E+
Sbjct: 351 NANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLF 410
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
M+ E+ EPD+ T + A G G + K + + I PS + +++++G+A
Sbjct: 411 HDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 470
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
+E+ M + + +I T++ ++ +F R G +K+ E + + I + T
Sbjct: 471 ALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTF 530
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
+ + AY GK E+ ++ S D ++ Y + E + E M+
Sbjct: 531 NAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKA 590
Query: 302 RGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337
P + Y M+ Y G + +L+E+M
Sbjct: 591 SDILPSIMCYCMMLAVY---GKTERWDDVNELLEEM 623
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 147/338 (43%), Gaps = 38/338 (11%)
Query: 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM 89
F + + G + ++ L ++M+ C+P+ + Y+I+I + DK + +M
Sbjct: 108 FALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEM 167
Query: 90 STQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV--------------------------- 122
+QG+ + +Y LI+AYGR + E L L+
Sbjct: 168 PSQGVSRSVFSYTALINAYGRNGRY-ETSLELLDRMKNEKISPSILTYNTVINACARGGL 226
Query: 123 ----------KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFN 172
+M E +PD+ T N L A G D E + GI P + T++
Sbjct: 227 DWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYS 286
Query: 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232
L++++GK EK+ ++ M I +YN++++A+ ++G +K+ +F M++
Sbjct: 287 HLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA 346
Query: 233 RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM 292
P+ T L+ +G +G+ + + + + +S+ D +N L++ +G F E+
Sbjct: 347 GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEV 406
Query: 293 KGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
+ M + +PD TY ++ A G+ A++
Sbjct: 407 VTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKI 444
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/316 (20%), Positives = 134/316 (42%), Gaps = 7/316 (2%)
Query: 14 LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC 73
LF MV+E + + +++ ++ A G+ GL + A +L++M D P Y+ +I++
Sbjct: 409 LFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYM-TANDIVPSSKAYTGVIEAF 467
Query: 74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV 133
+A +++ + M G P+ T+++L+ ++ R + E E L +++ +
Sbjct: 468 GQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNR 527
Query: 134 WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY 193
T N + A+ G+ + K Y + + P T +L Y A ++ E
Sbjct: 528 DTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEE 587
Query: 194 MQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA-YGHAG 252
M+ +I+ Y +++ +G+ + L M S R+ + +++ Y
Sbjct: 588 MKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDS 647
Query: 253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD----- 307
+ + VL +++ L F+N L+DA L VL +RG P+
Sbjct: 648 NWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPELFRKN 707
Query: 308 KVTYRTMVRAYSTNGM 323
K+ + V S GM
Sbjct: 708 KLVWSVDVHRMSEGGM 723
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 5/180 (2%)
Query: 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY-SWTIVTYNIV 209
++ +C + F++ + S+N F ++ + G +++ + +YMQ+ + Y I+
Sbjct: 91 SIARCLDIFKN---KLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIM 147
Query: 210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269
I GR G L + +F M S+ + S + +L+ AYG G+ E +L + N I
Sbjct: 148 ISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKI 207
Query: 270 MLDTVFFNCLVDAYGRLKCFAE-MKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAK 328
+ +N +++A R E + G+ M+ G +PD VTY T++ A + G+ + A+
Sbjct: 208 SPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAE 267
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 36/352 (10%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
GK +P++A ++ MV G + ++ +L+SAY R G+ D+A L M +PD
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEK-GTKPD 383
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
V TY+ L+ +A + ++ +M G +PN T+N I YG F EM
Sbjct: 384 VFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD 443
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
++ PD+ T N L FG +G + +++ + AG P TFN L+ +Y + G
Sbjct: 444 EINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
FE+ V M + + TYN V+ A R G +Q E + M R KP+ +T C
Sbjct: 504 SFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYC 563
Query: 243 SLVRAYGHAGKPEKLGSVLR-----FIDNSDIMLDTVF---------------------- 275
SL+ AY + + + S+ I+ ++L T+
Sbjct: 564 SLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER 623
Query: 276 --------FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319
N +V YGR + A+ GVL+ M++RG P TY +++ +S
Sbjct: 624 GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHS 675
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 174/350 (49%), Gaps = 40/350 (11%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGL-FDKAFSLLEHMKNTPDCQPDVNTYSI 68
+A +F+ M ++GC ++ +L+ +G+ G ++K SL+E MK + PD TY+
Sbjct: 226 EAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMK-SDGIAPDAYTYNT 284
Query: 69 LIKSCLKA-----------------FAFDKVQ------------------ALLSDMSTQG 93
LI C + F++DKV +L++M G
Sbjct: 285 LITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNG 344
Query: 94 IRPNTVTYNTLIDAYGRAKMFAE-MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTM 152
P+ VTYN+LI AY R M E MEL +M + +PDV+T L F +G++++
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELK-NQMAEKGTKPDVFTYTTLLSGFERAGKVESA 403
Query: 153 EKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212
+E+ ++AG +P+I TFN + YG G F +M + + + S IVT+N ++
Sbjct: 404 MSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAV 463
Query: 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD 272
FG+ G ++ +F+ M+ P T +L+ AY G E+ +V R + ++ + D
Sbjct: 464 FGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPD 523
Query: 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322
+N ++ A R + + + VL M+ CKP+++TY +++ AY+ NG
Sbjct: 524 LSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYA-NG 572
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 161/323 (49%), Gaps = 2/323 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
MLGK + A +F + ++G + S+T+L+SA+ SG + +A ++ + M+ C+
Sbjct: 182 MLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED-GCK 240
Query: 61 PDVNTYSILIKSCLK-AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
P + TY++++ K ++K+ +L+ M + GI P+ TYNTLI R + E
Sbjct: 241 PTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQ 300
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
+M + D T N L +G S + K + G PSI T+N L+ +Y
Sbjct: 301 VFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYA 360
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
+ G ++ + M + + TY ++ F RAG ++ +F MR+ KP+
Sbjct: 361 RDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNIC 420
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T + ++ YG+ GK ++ + I+ + D V +N L+ +G+ +E+ GV + M
Sbjct: 421 TFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480
Query: 300 QQRGCKPDKVTYRTMVRAYSTNG 322
++ G P++ T+ T++ AYS G
Sbjct: 481 KRAGFVPERETFNTLISAYSRCG 503
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 159/325 (48%), Gaps = 1/325 (0%)
Query: 14 LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC 73
+F+ M G ++F L+SAY R G F++A ++ M + PD++TY+ ++ +
Sbjct: 476 VFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDA-GVTPDLSTYNTVLAAL 534
Query: 74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV 133
+ +++ + +L++M +PN +TY +L+ AY K M ++ S EP
Sbjct: 535 ARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRA 594
Query: 134 WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY 193
+ + + E+ + + + G P I T N ++ YG+ K + V++Y
Sbjct: 595 VLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDY 654
Query: 194 MQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253
M++ ++ ++ TYN ++ R+ D + E + R + ++ IKP ++ +++ AY +
Sbjct: 655 MKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTR 714
Query: 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRT 313
+ + NS I+ D + +N + +Y F E GV+ M + GC+P++ TY +
Sbjct: 715 MRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNS 774
Query: 314 MVRAYSTNGMKNHAKEFQDLVEKMD 338
+V Y K+ AK F + + +D
Sbjct: 775 IVDGYCKLNRKDEAKLFVEDLRNLD 799
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 146/375 (38%), Gaps = 42/375 (11%)
Query: 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP--DVNTYSILI 70
ELF+ D+ ++ + A L G FD A + D Q D + +I+I
Sbjct: 122 ELFEPFKDK-PESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIII 180
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
K + + + G + +Y +LI A+ + + E KM + C+
Sbjct: 181 SMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCK 240
Query: 131 PDVWTMNCTLRAFGNSG-QIDTMEKCYEKFQSAGIQPSINTFNI---------------- 173
P + T N L FG G + + EK +S GI P T+N
Sbjct: 241 PTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQ 300
Query: 174 -------------------LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214
LLD YGK+ ++ V+ M +S +IVTYN +I A+
Sbjct: 301 VFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYA 360
Query: 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV 274
R G L + L M + KP T +L+ + AGK E S+ + N+ +
Sbjct: 361 RDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNIC 420
Query: 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334
FN + YG F EM + + + G PD VT+ T++ + NGM + E +
Sbjct: 421 TFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDS---EVSGVF 477
Query: 335 EKMDETCLAMKRPDF 349
++M +R F
Sbjct: 478 KEMKRAGFVPERETF 492
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 148 bits (373), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 171/346 (49%), Gaps = 14/346 (4%)
Query: 2 LGKCKQPEKAHELFQAMVDEGC-DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
LGK + + E+F+ M + + ++ L+S G+ G A L MKN+ C+
Sbjct: 107 LGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS-GCR 165
Query: 61 PDVNTYSILIKSCL----KAFAFDKVQALLSDMSTQGI---RPNTVTYNTLIDAYGRAKM 113
PD + Y+ LI + L KA A +KV+ L M +GI +PN VTYN L+ A+ ++
Sbjct: 166 PDASVYNALITAHLHTRDKAKALEKVRGYLDKM--KGIERCQPNVVTYNILLRAFAQSGK 223
Query: 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI 173
++ + PDV+T N + A+G +G I ME + +S +P I TFN+
Sbjct: 224 VDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNV 283
Query: 174 LLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233
L+DSYGK FEKM + + + T+ T+N +I +G+A + + E++F+ M
Sbjct: 284 LIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMN 343
Query: 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293
PS +T ++ YG+ G + + + SD +L N +++ Y R + E
Sbjct: 344 YIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEAD 403
Query: 294 GVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339
+ PD TY+ + +AY+ MK ++ Q L++KM++
Sbjct: 404 KLFHNASAFRVHPDASTYKFLYKAYTKADMK---EQVQILMKKMEK 446
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 145/297 (48%), Gaps = 7/297 (2%)
Query: 33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92
L G+S + + + M+ PD YS LI K L S+M
Sbjct: 103 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 162
Query: 93 GIRPNTVTYNTLIDAY----GRAKMFAEMELTLVKMLS-EDCEPDVWTMNCTLRAFGNSG 147
G RP+ YN LI A+ +AK ++ L KM E C+P+V T N LRAF SG
Sbjct: 163 GCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSG 222
Query: 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207
++D + ++ + + P + TFN ++D+YGK G ++M AV+ M+ I+T+N
Sbjct: 223 KVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFN 282
Query: 208 IVIDAFGRAGDLKQMEYLFR-LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266
++ID++G+ + ++ME F+ LMRS+ KP+ T S++ YG A +K V + +++
Sbjct: 283 VLIDSYGKKQEFEKMEQTFKSLMRSKE-KPTLPTFNSMIINYGKARMIDKAEWVFKKMND 341
Query: 267 SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323
+ + + + C++ YG + + + E + + T M+ Y NG+
Sbjct: 342 MNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGL 398
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 141/323 (43%), Gaps = 39/323 (12%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAY----GRSGLFDKAFSLLEHMKNT 56
++GK Q A LF M + GC + + AL++A+ ++ +K L+ MK
Sbjct: 142 VMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGI 201
Query: 57 PDCQPDVNTYSILIKSCLKAFAFDKVQALLSD---------------------------- 88
CQP+V TY+IL+++ ++ D+V AL D
Sbjct: 202 ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKE 261
Query: 89 -------MSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR 141
M + +P+ +T+N LID+YG+ + F +ME T ++ +P + T N +
Sbjct: 262 MEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMII 321
Query: 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW 201
+G + ID E ++K PS T+ ++ YG G + + E + +
Sbjct: 322 NYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVL 381
Query: 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261
T N +++ + R G + + LF + R+ P T L +AY A E++ ++
Sbjct: 382 KASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILM 441
Query: 262 RFIDNSDIMLDTVFFNCLVDAYG 284
+ ++ I+ + FF ++ +G
Sbjct: 442 KKMEKDGIVPNKRFFLEALEVFG 464
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 158/312 (50%), Gaps = 8/312 (2%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E A + + M N+ F+ LL+ + G + K F +L+ MK+ +PD Y++
Sbjct: 391 ESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSI-GVKPDRQFYNV 449
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID---AYGRAKMFAEMELTLVKML 125
+I + K D M ++GI P+ VT+NTLID +GR + EM M
Sbjct: 450 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEM---FEAME 506
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185
C P T N + ++G+ + D M++ K +S GI P++ T L+D YGK+G F
Sbjct: 507 RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFN 566
Query: 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245
+E M+ + YN +I+A+ + G +Q FR+M S+ +KPS + L SL+
Sbjct: 567 DAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLI 626
Query: 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305
A+G + + +VL+++ + + D V + L+ A R+ F ++ V E M GCK
Sbjct: 627 NAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCK 686
Query: 306 PDKVTYRTMVRA 317
PD+ R+M+R+
Sbjct: 687 PDRKA-RSMLRS 697
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 149/326 (45%), Gaps = 1/326 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
K P KA +L G A T + +++SA SG +A +L E ++ + +P
Sbjct: 279 FAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQS-GIKP 337
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
Y+ L+K +K ++++S+M +G+ P+ TY+ LIDAY A + + L
Sbjct: 338 RTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVL 397
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
+M + D +P+ + + L F + G+ + ++ +S G++P +N+++D++GK
Sbjct: 398 KEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKF 457
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
+ + M VT+N +ID + G E +F M P T
Sbjct: 458 NCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTY 517
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
++ +YG + + + +L + + I+ + V LVD YG+ F + LE M+
Sbjct: 518 NIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKS 577
Query: 302 RGCKPDKVTYRTMVRAYSTNGMKNHA 327
G KP Y ++ AY+ G+ A
Sbjct: 578 VGLKPSSTMYNALINAYAQRGLSEQA 603
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 157/343 (45%), Gaps = 36/343 (10%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A LF+ + G T+++ ALL Y ++G A S++ M+ PD +TYS+L
Sbjct: 322 EAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKR-GVSPDEHTYSLL 380
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
I + + A ++ + +L +M ++PN+ ++ L+ + + + L +M S
Sbjct: 381 IDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGV 440
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
+PD N + FG +D +++ S GI+P T+N L+D + K G
Sbjct: 441 KPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEE 500
Query: 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249
+ E M++ TYNI+I+++G M+ L M+S+ I P+ VT +LV YG
Sbjct: 501 MFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYG 560
Query: 250 HAG-----------------KP------------------EKLGSVLRFIDNSDIMLDTV 274
+G KP E+ + R + + + +
Sbjct: 561 KSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLL 620
Query: 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRA 317
N L++A+G + AE VL+ M++ G KPD VTY T+++A
Sbjct: 621 ALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKA 663
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 43/344 (12%)
Query: 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM 89
++ L+ A GRS +AF L + TP TY+ LI +C + +K L++ M
Sbjct: 170 YSILIHALGRSEKLYEAFLLSQKQTLTP------LTYNALIGACARNNDIEKALNLIAKM 223
Query: 90 STQGIRPNTVTYNTLIDAYGRA-KMFAEMELTLVKMLSED-CEPDVWTMN---------- 137
G + + V Y+ +I + R+ K+ + M L L K + D E DV +N
Sbjct: 224 RQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSG 283
Query: 138 -------------------------CTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFN 172
+ A +SG+ E +E+ + +GI+P +N
Sbjct: 284 DPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYN 343
Query: 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232
LL Y K G + +++ M+K S TY+++IDA+ AG + + + M +
Sbjct: 344 ALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAG 403
Query: 233 RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM 292
++P+ L+ + G+ +K VL+ + + + D F+N ++D +G+ C
Sbjct: 404 DVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHA 463
Query: 293 KGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
+ M G +PD+VT+ T++ + +G A+E + +E+
Sbjct: 464 MTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER 507
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 1/235 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
GK + A F M+ EG + + ++ L+ + + G A + E M+ C P
Sbjct: 454 FGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERR-GCLP 512
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
TY+I+I S +D ++ LL M +QGI PN VT+ TL+D YG++ F + L
Sbjct: 513 CATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECL 572
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
+M S +P N + A+ G + + S G++PS+ N L++++G+
Sbjct: 573 EEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGED 632
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 236
+ AV++YM++ +VTY ++ A R +++ ++ M KP
Sbjct: 633 RRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKP 687
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 146/320 (45%), Gaps = 1/320 (0%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A +L M D GC + ++ L++ + G D+A L M ++ CQP+V T++I++
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS-GCQPNVITHNIIL 316
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
+S + + LL+DM +G P+ VT+N LI+ R + L KM C+
Sbjct: 317 RSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190
P+ + N L F ++D + E+ S G P I T+N +L + K G E +
Sbjct: 377 PNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEI 436
Query: 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250
+ + S ++TYN VID +AG + L MR++ +KP +T SLV
Sbjct: 437 LNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496
Query: 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT 310
GK ++ + I + V FN ++ + + L M RGCKP++ +
Sbjct: 497 EGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETS 556
Query: 311 YRTMVRAYSTNGMKNHAKEF 330
Y ++ + GM A E
Sbjct: 557 YTILIEGLAYEGMAKEALEL 576
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/368 (25%), Positives = 162/368 (44%), Gaps = 36/368 (9%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPD--- 58
LGK ++ K E+ + G + ++ ++S Y ++G + A S+L+ M +PD
Sbjct: 150 LGKTRKAAKILEILEG---SGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVT 206
Query: 59 ----------------------------CQPDVNTYSILIKSCLKAFAFDKVQALLSDMS 90
C PDV TY+ILI++ + LL +M
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR 266
Query: 91 TQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150
+G P+ VTYN L++ + E L M S C+P+V T N LR+ ++G+
Sbjct: 267 DRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWM 326
Query: 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210
EK G PS+ TFNIL++ + G + ++E M ++ ++YN ++
Sbjct: 327 DAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLL 386
Query: 211 DAFGRAGDL-KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269
F + + + +EYL R M S P VT +++ A GK E +L + +
Sbjct: 387 HGFCKEKKMDRAIEYLER-MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445
Query: 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE 329
+ +N ++D + + +L+ M+ + KPD +TY ++V S G + A +
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIK 505
Query: 330 FQDLVEKM 337
F E+M
Sbjct: 506 FFHEFERM 513
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 139/322 (43%), Gaps = 4/322 (1%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E+ + + MV G + T L+ + R G KA +LE ++ + PDV TY++
Sbjct: 119 EEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGS-GAVPDVITYNV 177
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
+I KA + ++L MS + P+ VTYNT++ + + + L +ML D
Sbjct: 178 MISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
C PDV T + A + K ++ + G P + T+N+L++ K G ++
Sbjct: 235 CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
+ M ++T+NI++ + G E L M + PS VT L+
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFL 354
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
G + +L + +++ +N L+ + + K LE M RGC PD
Sbjct: 355 CRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDI 414
Query: 309 VTYRTMVRAYSTNGMKNHAKEF 330
VTY TM+ A +G A E
Sbjct: 415 VTYNTMLTALCKDGKVEDAVEI 436
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 8/244 (3%)
Query: 87 SDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146
S + + G+ + TL Y + ED E N LR +
Sbjct: 61 SKVESSGLNGRAQKFETLSSGYSNSNGNGHYSSVNSSFALEDVES-----NNHLRQMVRT 115
Query: 147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY 206
G+++ K E G P I L+ + + G K + ++E ++ ++TY
Sbjct: 116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITY 175
Query: 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266
N++I + +AG++ + M + P VT +++R+ +GK ++ VL +
Sbjct: 176 NVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ 232
Query: 267 SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNH 326
D D + + L++A R +L+ M+ RGC PD VTY +V G +
Sbjct: 233 RDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDE 292
Query: 327 AKEF 330
A +F
Sbjct: 293 AIKF 296
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 14/184 (7%)
Query: 158 KFQSAGIQPSINTFNILLDSYGKA---GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214
K +S+G+ F L Y + GH+ +++ ++ V N +
Sbjct: 62 KVESSGLNGRAQKFETLSSGYSNSNGNGHYSSVNS--------SFALEDVESNNHLRQMV 113
Query: 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV 274
R G+L++ M P + +L+R + GK K +L ++ S + D +
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173
Query: 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334
+N ++ Y + E+ L V+ + PD VTY T++R+ +G A E D +
Sbjct: 174 TYNVMISGYCKA---GEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230
Query: 335 EKMD 338
+ D
Sbjct: 231 LQRD 234
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
L K + KA +L M + +T ++++L+ R G D+A + +P
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM-GIRP 517
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
+ T++ ++ K+ D+ L M +G +PN +Y LI+ M E
Sbjct: 518 NAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA---- 573
Query: 122 VKMLSEDC 129
+++L+E C
Sbjct: 574 LELLNELC 581
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 1 MLGKCK--QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKN 55
MLG CK Q ++A + M++ GC N S+T L+ G+ +A LL + N
Sbjct: 526 MLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCN 582
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 164/327 (50%), Gaps = 1/327 (0%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
+ KQ + AH LF M + +++ L++++G+ G+FD A S L+ M+ D+
Sbjct: 167 RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQD-RVSGDL 225
Query: 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123
YS LI+ + + K ++ S + GI P+ V YN++I+ YG+AK+F E L + +
Sbjct: 226 VLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKE 285
Query: 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
M P+ + + L + + + + + + + T NI++D YG+
Sbjct: 286 MNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDM 345
Query: 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
++ + ++K +V+YN ++ +G A + +LFRLM+ + I+ + VT +
Sbjct: 346 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT 405
Query: 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
+++ YG + EK ++++ + + I + + ++ ++ +G+ + + ++ G
Sbjct: 406 MIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSG 465
Query: 304 CKPDKVTYRTMVRAYSTNGMKNHAKEF 330
+ D+V Y+TM+ AY G+ HAK
Sbjct: 466 VEIDQVLYQTMIVAYERVGLMGHAKRL 492
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 148/316 (46%), Gaps = 5/316 (1%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
GK K +A L + M + G NT S++ LLS Y + F +A S+ MK +C D
Sbjct: 271 GKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV-NCALD 329
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
+ T +I+I + + L + I PN V+YNT++ YG A++F E
Sbjct: 330 LTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFR 389
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
M +D E +V T N ++ +G + + + ++ QS GI+P+ T++ ++ +GKAG
Sbjct: 390 LMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAG 449
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
++ + + + ++ V Y +I A+ R G M + RL+ ++ P +
Sbjct: 450 KLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVG---LMGHAKRLLHELKL-PDNIPRE 505
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
+ + AG+ E+ V R S + D F C+++ Y R + + + V E M+
Sbjct: 506 TAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTA 565
Query: 303 GCKPDKVTYRTMVRAY 318
G PD ++ AY
Sbjct: 566 GYFPDSNVIAMVLNAY 581
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/370 (21%), Positives = 165/370 (44%), Gaps = 40/370 (10%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+L Q + ELF + S ++S R + ++ +LL+ +
Sbjct: 95 LLASIHQTQNEKELFSLL--STYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYT 152
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P V Y++++++ L+A FD L +M + + P+ TY+TLI ++G+ MF + L+
Sbjct: 153 PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMF-DSALS 211
Query: 121 LVKMLSED-------------------CE-----------------PDVWTMNCTLRAFG 144
++ + +D C+ PD+ N + +G
Sbjct: 212 WLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYG 271
Query: 145 NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV 204
+ ++ AG+ P+ +++ LL Y + F + +V M++ + + +
Sbjct: 272 KAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLT 331
Query: 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264
T NI+ID +G+ +K+ + LF +R I+P+ V+ +++R YG A + + R +
Sbjct: 332 TCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLM 391
Query: 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG-M 323
DI + V +N ++ YG+ + +++ MQ RG +P+ +TY T++ + G +
Sbjct: 392 QRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKL 451
Query: 324 KNHAKEFQDL 333
A FQ L
Sbjct: 452 DRAATLFQKL 461
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/349 (20%), Positives = 141/349 (40%), Gaps = 30/349 (8%)
Query: 6 KQPEKAHELFQAMVDEGCDANTQSFTALLS--AYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
KQPEK T SF AL Y RS D + E + + Q +
Sbjct: 61 KQPEKN--------------TTSSFQALRKHRRYQRSAFLDHNVDMDELLASIHQTQNEK 106
Query: 64 NTYSILIKSCLKAFAFDKVQALLS------------DMSTQGIR--PNTVTYNTLIDAYG 109
+S+L + + + +LLS D + + P+ YN ++
Sbjct: 107 ELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVL 166
Query: 110 RAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN 169
RAK F +M PD +T + + +FG G D+ +K + + +
Sbjct: 167 RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLV 226
Query: 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229
++ L++ + + K ++ +++ + +V YN +I+ +G+A ++ L + M
Sbjct: 227 LYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEM 286
Query: 230 RSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289
+ P+ V+ +L+ Y K + SV + + LD N ++D YG+L
Sbjct: 287 NEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMV 346
Query: 290 AEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338
E + +++ +P+ V+Y T++R Y + A L+++ D
Sbjct: 347 KEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKD 395
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 116/261 (44%), Gaps = 32/261 (12%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
G+ + +A LF+ M + + N ++ ++ YG++ +KA +L++ M+ + +P+
Sbjct: 376 GEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQ-SRGIEPN 434
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA-------KMFA 115
TYS +I KA D+ L + + G+ + V Y T+I AY R ++
Sbjct: 435 AITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLH 494
Query: 116 EMEL-------TLVKMLSE--DCEPDVWTMN---------------CTLRAFGNSGQIDT 151
E++L T + +L++ E W C + + + +
Sbjct: 495 ELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVN 554
Query: 152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID 211
+ + +EK ++AG P N ++L++YGK FEK V MQ+ + + ++
Sbjct: 555 VIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLS 614
Query: 212 AFGRAGDLKQMEYLFRLMRSE 232
+ D + +E LF+ + S+
Sbjct: 615 LYSSKKDFEMVESLFQRLESD 635
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
GK ++ EKA +++ M +EGC + +LS Y K F ++E + + P+
Sbjct: 582 GKQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSSK----KDFEMVESLFQRLESDPN 637
Query: 63 VNTYSI-LIKSCL--KAFAFDKVQALLSDMSTQGI 94
VN+ + L+ + L +A + +++ M +GI
Sbjct: 638 VNSKELHLVVAALYERADKLNDASRVMNRMRERGI 672
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 161/336 (47%), Gaps = 2/336 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
LG+ + A +F+ G +F+AL+SAYGRSGL ++A S+ MK +P
Sbjct: 243 LGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY-GLRP 301
Query: 62 DVNTYSILIKSCLKA-FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
++ TY+ +I +C K F +V +M G++P+ +T+N+L+ R ++
Sbjct: 302 NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNL 361
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+M + E DV++ N L A GQ+D + + I P++ +++ ++D + K
Sbjct: 362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
AG F++ + M+ + V+YN ++ + + G ++ + R M S IK VT
Sbjct: 422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVT 481
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
+L+ YG GK +++ V + ++ + + ++ L+D Y + + E + +
Sbjct: 482 YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
G + D V Y ++ A NG+ A D + K
Sbjct: 542 SAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTK 577
Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 149/332 (44%), Gaps = 22/332 (6%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E A LF M + + + S+ LL A + G D AF +L M P+V +YS
Sbjct: 356 EAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMP-VKRIMPNVVSYST 414
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
+I KA FD+ L +M GI + V+YNTL+ Y + E L +M S
Sbjct: 415 VIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVG 474
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
+ DV T N L +G G+ D ++K + + + + P++ T++ L+D Y K G +++
Sbjct: 475 IKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAM 534
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
+ + +V Y+ +IDA + G + L M E I P+ VT S++ A+
Sbjct: 535 EIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAF 594
Query: 249 GHAGKPEKL-----GSVLRFIDNSDIMLDTVFFNCLVDAYGRL-------------KCFA 290
G + ++ G L F ++ L N ++ +G+L +
Sbjct: 595 GRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQ 654
Query: 291 EMKGVLEV---MQQRGCKPDKVTYRTMVRAYS 319
E+ +LEV M Q KP+ VT+ ++ A S
Sbjct: 655 ELSCILEVFRKMHQLEIKPNVVTFSAILNACS 686
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 119/267 (44%), Gaps = 22/267 (8%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
K + ++A LF M G + S+ LLS Y + G ++A +L M + +
Sbjct: 419 FAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASV-GIKK 477
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
DV TY+ L+ K +D+V+ + ++M + + PN +TY+TLID Y + ++ E
Sbjct: 478 DVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIF 537
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
+ S DV + + A +G + + ++ GI P++ T+N ++D++G++
Sbjct: 538 REFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRS 597
Query: 182 GHFEKMS-----AVMEYMQKYHYSWTIVTYNIVIDAFGRAG----------------DLK 220
++ + + + + T N VI FG+ +L
Sbjct: 598 ATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELS 657
Query: 221 QMEYLFRLMRSERIKPSCVTLCSLVRA 247
+ +FR M IKP+ VT +++ A
Sbjct: 658 CILEVFRKMHQLEIKPNVVTFSAILNA 684
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Query: 140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY 199
+ G G++ ++ +E + G ++ F+ L+ +YG++G E+ +V M++Y
Sbjct: 240 ISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGL 299
Query: 200 SWTIVTYNIVIDAFGRAG-DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLG 258
+VTYN VIDA G+ G + KQ+ F M+ ++P +T SL+ G E
Sbjct: 300 RPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAAR 359
Query: 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK---PDKVTYRTMV 315
++ + N I D +N L+DA + +M E++ Q K P+ V+Y T++
Sbjct: 360 NLFDEMTNRRIEQDVFSYNTLLDAICK---GGQMDLAFEILAQMPVKRIMPNVVSYSTVI 416
Query: 316 RAYSTNG 322
++ G
Sbjct: 417 DGFAKAG 423
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 100/229 (43%), Gaps = 48/229 (20%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
GK + ++ ++F M E N +++ L+ Y + GL+ +A + K + + D
Sbjct: 490 GKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK-SAGLRAD 548
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA----------- 111
V YS LI + K +L+ +M+ +GI PN VTYN++IDA+GR+
Sbjct: 549 VVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSN 608
Query: 112 -----------------------KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ 148
++F ++ ++DCE + ++C L F Q
Sbjct: 609 GGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQ 668
Query: 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY 197
++ I+P++ TF+ +L++ + FE S ++E ++ +
Sbjct: 669 LE-------------IKPNVVTFSAILNACSRCNSFEDASMLLEELRLF 704
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 98/235 (41%), Gaps = 20/235 (8%)
Query: 105 IDAYGRAKMFAEMELTLVKML--SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYE----K 158
ID G +MF + L+ L S+DC +R GN + D YE +
Sbjct: 173 IDFSGDDEMFHSLMLSFESKLCGSDDC-------TYIIRELGNRNECDKAVGFYEFAVKR 225
Query: 159 FQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218
+ Q + + ++ + G+ G + E Y T+ ++ +I A+GR+G
Sbjct: 226 ERRKNEQGKLAS--AMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGL 283
Query: 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID---NSDIMLDTVF 275
++ +F M+ ++P+ VT +++ A G G K V +F D + + D +
Sbjct: 284 HEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFK--QVAKFFDEMQRNGVQPDRIT 341
Query: 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
FN L+ R + + + + M R + D +Y T++ A G + A E
Sbjct: 342 FNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEI 396
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 161/349 (46%), Gaps = 7/349 (2%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+ GK +A + + M + C A++ ++ L++AY R+G +A ++E M
Sbjct: 325 VFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKK-GVM 383
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P+ TY+ +I + KA D+ L M G PNT TYN ++ G+ EM
Sbjct: 384 PNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKM 443
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
L M S C P+ T N L GN G + + + + +S G +P +TFN L+ +YG+
Sbjct: 444 LCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGR 503
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
G S + M + ++ + TYN +++A R GD + E + M+S+ KP+ +
Sbjct: 504 CGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETS 563
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
+++ Y G + + I I + L+ A + + A + + +
Sbjct: 564 YSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFK 623
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
+ G KPD V + +M+ ++ N M + A + ++E + E L+ PD
Sbjct: 624 KHGYKPDMVIFNSMLSIFTRNNMYDQA---EGILESIREDGLS---PDL 666
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 154/320 (48%), Gaps = 6/320 (1%)
Query: 9 EKAHELFQAMV----DEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVN 64
E+A LF+ +V + Q + GR + A LL+ + + DV
Sbjct: 153 ERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIP-LQEYLLDVR 211
Query: 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR-AKMFAEMELTLVK 123
Y+ ++ + + ++K L M G P VTYN ++D +G+ + + ++ L +
Sbjct: 212 AYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDE 271
Query: 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
M S+ + D +T + L A G + ++ + + +S G +P T+N LL +GKAG
Sbjct: 272 MRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGV 331
Query: 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
+ + +V++ M++ VTYN ++ A+ RAG K+ + +M + + P+ +T +
Sbjct: 332 YTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTT 391
Query: 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
++ AYG AGK ++ + + + + +T +N ++ G+ EM +L M+ G
Sbjct: 392 VIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNG 451
Query: 304 CKPDKVTYRTMVRAYSTNGM 323
C P++ T+ TM+ GM
Sbjct: 452 CSPNRATWNTMLALCGNKGM 471
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 153/327 (46%), Gaps = 1/327 (0%)
Query: 12 HELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIK 71
+ +F+ M G + + +F L+SAYGR G A + M V TY+ L+
Sbjct: 476 NRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRA-GFNACVTTYNALLN 534
Query: 72 SCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEP 131
+ + + + ++SDM ++G +P +Y+ ++ Y + + +E ++ P
Sbjct: 535 ALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFP 594
Query: 132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVM 191
+ L A + E+ + F+ G +P + FN +L + + +++ ++
Sbjct: 595 SWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGIL 654
Query: 192 EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA 251
E +++ S +VTYN ++D + R G+ + E + + + ++KP V+ ++++ +
Sbjct: 655 ESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRR 714
Query: 252 GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTY 311
G ++ +L + I +N V Y + FAE++ V+E M + C+P+++T+
Sbjct: 715 GLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTF 774
Query: 312 RTMVRAYSTNGMKNHAKEFQDLVEKMD 338
+ +V Y G + A +F ++ D
Sbjct: 775 KMVVDGYCRAGKYSEAMDFVSKIKTFD 801
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/366 (23%), Positives = 156/366 (42%), Gaps = 44/366 (12%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGL-FDKAFSLLEHMKNTPDCQPDVNTYS 67
EKA +LF+ M + G ++ +L +G+ G + K +L+ M+ + + D T S
Sbjct: 227 EKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMR-SKGLKFDEFTCS 285
Query: 68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127
++ +C + + + +++ + G P TVTYN L+ +G+A ++ E L +M
Sbjct: 286 TVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEEN 345
Query: 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKM 187
C D T N + A+ +G E G+ P+ T+ ++D+YGKAG ++
Sbjct: 346 SCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEA 405
Query: 188 SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247
+ M++ TYN V+ G+ +M + M+S P+ T +++
Sbjct: 406 LKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLAL 465
Query: 248 YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL-------KCFAEM-------- 292
G+ G + + V R + + D FN L+ AYGR K + EM
Sbjct: 466 CGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNAC 525
Query: 293 --------------------KGVLEVMQQRGCKPDKVTYRTMVRAYSTNG-------MKN 325
+ V+ M+ +G KP + +Y M++ Y+ G ++N
Sbjct: 526 VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEN 585
Query: 326 HAKEFQ 331
KE Q
Sbjct: 586 RIKEGQ 591
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 154/370 (41%), Gaps = 39/370 (10%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
GK + ++A +LF +M + GC NT ++ A+LS G+ ++ +L MK+ C P+
Sbjct: 397 GKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSN-GCSPN 455
Query: 63 VNTYSILIKSC---------------LKAFAF----DKVQALLS---------------- 87
T++ ++ C +K+ F D L+S
Sbjct: 456 RATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYG 515
Query: 88 DMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG 147
+M+ G TYN L++A R + E + M S+ +P + + L+ + G
Sbjct: 516 EMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGG 575
Query: 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207
+E+ + + I PS LL + K +K+ Y +V +N
Sbjct: 576 NYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFN 635
Query: 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267
++ F R Q E + +R + + P VT SL+ Y G+ K +L+ ++ S
Sbjct: 636 SMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKS 695
Query: 268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327
+ D V +N ++ + R E +L M +RG +P TY T V Y+ GM
Sbjct: 696 QLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM---F 752
Query: 328 KEFQDLVEKM 337
E +D++E M
Sbjct: 753 AEIEDVIECM 762
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 152/323 (47%), Gaps = 2/323 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+LG+ Q A +L + + + +++T +L AY R+G ++KA L E MK
Sbjct: 184 ILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGP-S 242
Query: 61 PDVNTYSILIKSCLK-AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
P + TY++++ K ++ K+ +L +M ++G++ + T +T++ A R + E +
Sbjct: 243 PTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKE 302
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
++ S EP T N L+ FG +G ++ + T+N L+ +Y
Sbjct: 303 FFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYV 362
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
+AG ++ + V+E M K +TY VIDA+G+AG + LF M+ P+
Sbjct: 363 RAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTC 422
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T +++ G + ++ +L + ++ + +N ++ G + V M
Sbjct: 423 TYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREM 482
Query: 300 QQRGCKPDKVTYRTMVRAYSTNG 322
+ G +PD+ T+ T++ AY G
Sbjct: 483 KSCGFEPDRDTFNTLISAYGRCG 505
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 115/220 (52%), Gaps = 1/220 (0%)
Query: 109 GRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI 168
GR ++ L K+ ++ DV L A+ +G+ + +E+ + G P++
Sbjct: 186 GRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTL 245
Query: 169 NTFNILLDSYGKAGH-FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR 227
T+N++LD +GK G + K+ V++ M+ + T + V+ A R G L++ + F
Sbjct: 246 VTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFA 305
Query: 228 LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287
++S +P VT +L++ +G AG + SVL+ ++ + D+V +N LV AY R
Sbjct: 306 ELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAG 365
Query: 288 CFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327
E GV+E+M ++G P+ +TY T++ AY G ++ A
Sbjct: 366 FSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEA 405
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 4/199 (2%)
Query: 140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY 199
+R G Q K +K + + +L +Y + G +EK + E M++
Sbjct: 182 VRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGP 241
Query: 200 SWTIVTYNIVIDAFGRAG-DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLG 258
S T+VTYN+++D FG+ G +++ + MRS+ +K T +++ A G +
Sbjct: 242 SPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAK 301
Query: 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318
+ + TV +N L+ +G+ + E VL+ M++ C D VTY +V AY
Sbjct: 302 EFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAY 361
Query: 319 STNGMKNHAKEFQDLVEKM 337
G +KE ++E M
Sbjct: 362 VRAGF---SKEAAGVIEMM 377
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 124/304 (40%), Gaps = 7/304 (2%)
Query: 30 FTALLSAYGRSGLFDKAFSLLEHM---KNTPDCQPDVNTYSILIKSCLKAFAFDKVQALL 86
+L+ SG +++A L E + N+ + D I ++ + + LL
Sbjct: 139 LVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLL 198
Query: 87 SDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146
+ Q + Y T++ AY R + + +M P + T N L FG
Sbjct: 199 DKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKM 258
Query: 147 GQ-IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVT 205
G+ + ++ +S G++ T + +L + + G + ++ Y VT
Sbjct: 259 GRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVT 318
Query: 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265
YN ++ FG+AG + + + M VT LV AY AG ++ V+ +
Sbjct: 319 YNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMT 378
Query: 266 NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKN 325
+M + + + ++DAYG+ E + M++ GC P+ TY ++ S G K+
Sbjct: 379 KKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVL---SLLGKKS 435
Query: 326 HAKE 329
+ E
Sbjct: 436 RSNE 439
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 166/340 (48%), Gaps = 8/340 (2%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKN---TPDC 59
G+ Q ++A L+ +++ ++ L+ AY +GL ++A +L M+N +P
Sbjct: 166 GQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKT 225
Query: 60 QPDVNTYSILIKSCLKAFA-FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA-KMFAEM 117
V Y+ I+ +K ++ + M +P T TYN +I+ YG+A K +
Sbjct: 226 -IGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSW 284
Query: 118 ELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177
+L +M S C+P++ T + AF G + E+ +E+ Q G++P + +N L++S
Sbjct: 285 KL-YCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMES 343
Query: 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237
Y +AG+ + + MQ +YNI++DA+GRAG E +F M+ I P+
Sbjct: 344 YSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPT 403
Query: 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297
+ L+ AY A K ++++ + + + DT N +++ YGRL F +M+ +L
Sbjct: 404 MKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILA 463
Query: 298 VMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDLVEK 336
M+ C D TY ++ Y G +E F +L EK
Sbjct: 464 EMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEK 503
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 149/303 (49%), Gaps = 3/303 (0%)
Query: 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT 98
R G ++A + + MK C+P TY+++I KA L +M + +PN
Sbjct: 241 RKGNTEEAIDVFQRMKRD-RCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNI 299
Query: 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEK 158
TY L++A+ R + + E ++ + EPDV+ N + ++ +G + +
Sbjct: 300 CTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSL 359
Query: 159 FQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218
Q G +P ++NI++D+YG+AG AV E M++ + T+ ++ +++ A+ +A D
Sbjct: 360 MQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARD 419
Query: 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC 278
+ + E + + M ++P L S++ YG G+ K+ +L ++N D +N
Sbjct: 420 VTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNI 479
Query: 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338
L++ YG+ ++ + ++++ +PD VT+ + + AYS K + K + E +D
Sbjct: 480 LINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRK--KLYVKCLEVFEEMID 537
Query: 339 ETC 341
C
Sbjct: 538 SGC 540
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 145/320 (45%), Gaps = 36/320 (11%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+ GK + + +L+ M C N ++TAL++A+ R GL +KA + E ++ +
Sbjct: 273 LYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQED-GLE 331
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV Y+ L++S +A + S M G P+ +YN ++DAYGRA + ++ E
Sbjct: 332 PDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 391
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+M P + + L A+ + + E ++ G++P N +L+ YG+
Sbjct: 392 FEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGR 451
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
G F KM ++ M+ + I TYNI+I+ +G+AG L+++E LF ++ + +P VT
Sbjct: 452 LGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVT 511
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
S + AY R K + + V E M
Sbjct: 512 WTS-----------------------------------RIGAYSRKKLYVKCLEVFEEMI 536
Query: 301 QRGCKPDKVTYRTMVRAYST 320
GC PD T + ++ A S+
Sbjct: 537 DSGCAPDGGTAKVLLSACSS 556
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 130/257 (50%), Gaps = 7/257 (2%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKA---FSLLEHMKNTPDCQPDVNT 65
EKA E+F+ + ++G + + + AL+ +Y R+G A FSL++HM C+PD +
Sbjct: 316 EKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHM----GCEPDRAS 371
Query: 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125
Y+I++ + +A +A+ +M GI P ++ L+ AY +A+ + E + +M
Sbjct: 372 YNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMS 431
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185
EPD + +N L +G GQ MEK + ++ I+T+NIL++ YGKAG E
Sbjct: 432 ENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLE 491
Query: 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245
++ + +++ ++ +VT+ I A+ R + +F M P T L+
Sbjct: 492 RIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLL 551
Query: 246 RAYGHAGKPEKLGSVLR 262
A + E++ SVLR
Sbjct: 552 SACSSEEQVEQVTSVLR 568
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 117/238 (49%), Gaps = 7/238 (2%)
Query: 8 PEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS 67
P A E+F M GC+ + S+ ++ AYGR+GL A ++ E MK P + ++
Sbjct: 350 PYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL-GIAPTMKSHM 408
Query: 68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127
+L+ + KA K +A++ +MS G+ P+T N++++ YGR F +ME L +M +
Sbjct: 409 LLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENG 468
Query: 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKM 187
C D+ T N + +G +G ++ +E+ + + + +P + T+ + +Y + + K
Sbjct: 469 PCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKC 528
Query: 188 SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245
V E M + T +++ A ++Q+ + R M VT+ SLV
Sbjct: 529 LEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMH------KGVTVSSLV 580
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 4/238 (1%)
Query: 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK 154
+P+ + +N LIDAYG+ + E E V++L P T ++A+ +G I+ E
Sbjct: 152 QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEV 211
Query: 155 CYEKFQSAGIQP---SINTFNILLDSYGK-AGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210
+ Q+ + P + +N ++ K G+ E+ V + M++ T TYN++I
Sbjct: 212 VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMI 271
Query: 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270
+ +G+A L+ MRS + KP+ T +LV A+ G EK + + +
Sbjct: 272 NLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLE 331
Query: 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAK 328
D +N L+++Y R + +MQ GC+PD+ +Y MV AY G+ + A+
Sbjct: 332 PDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAE 389
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 162/314 (51%), Gaps = 2/314 (0%)
Query: 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT 65
+ ++ E+F+ M ++G + F L+ ++ GL ++A + M+ + +
Sbjct: 323 RSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKK-GIRSNTIV 381
Query: 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125
Y+ L+ + K+ ++V+ L ++M +G++P+ TYN L+DAY R +E L +M
Sbjct: 382 YNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREME 441
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEK-CYEKFQSAGIQPSINTFNILLDSYGKAGHF 184
EP+V + C + A+G + ++ M + + + G++PS +++ L+ +Y +G
Sbjct: 442 DLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWH 501
Query: 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244
EK A E M K ++ TY V+DAF R+GD ++ +++LM E+IK + +T +L
Sbjct: 502 EKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTL 561
Query: 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC 304
+ + G + V+ + + +N L++AY R A++ +L+ M
Sbjct: 562 LDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNL 621
Query: 305 KPDKVTYRTMVRAY 318
KPD +TY TM+ A+
Sbjct: 622 KPDSITYSTMIYAF 635
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 149/307 (48%), Gaps = 2/307 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E+A + M +G +NT + L+ AY +S ++ L M++ +P TY+I
Sbjct: 361 EEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDK-GLKPSAATYNI 419
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL-TLVKMLSE 127
L+ + + D V+ LL +M G+ PN +Y LI AYGR K ++M ++M
Sbjct: 420 LMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKV 479
Query: 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKM 187
+P + + A+ SG + +E+ GI+PS+ T+ +LD++ ++G K+
Sbjct: 480 GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKL 539
Query: 188 SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247
+ + M + T +TYN ++D F + G + + ++PS +T L+ A
Sbjct: 540 MEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNA 599
Query: 248 YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307
Y G+ KL +L+ + ++ D++ ++ ++ A+ R++ F ++M + G PD
Sbjct: 600 YARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPD 659
Query: 308 KVTYRTM 314
+Y +
Sbjct: 660 PRSYEKL 666
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 151/323 (46%), Gaps = 3/323 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDK-AFSLLEHMKNTPDCQ 60
L ++ + A E+++AM + + L++ ++G K + + E M +
Sbjct: 283 LSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEK-GVK 341
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
+ + L+KS ++ + ++M +GIR NT+ YNTL+DAY ++ E+E
Sbjct: 342 WSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGL 401
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+M + +P T N + A+ Q D +E + + G++P++ ++ L+ +YG+
Sbjct: 402 FTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGR 461
Query: 181 AGHFEKMSA-VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
M+A M+K + +Y +I A+ +G ++ F M E IKPS
Sbjct: 462 TKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVE 521
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T S++ A+ +G KL + + + I + +N L+D + + + E + V+
Sbjct: 522 TYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEF 581
Query: 300 QQRGCKPDKVTYRTMVRAYSTNG 322
+ G +P +TY ++ AY+ G
Sbjct: 582 SKMGLQPSVMTYNMLMNAYARGG 604
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 111/224 (49%), Gaps = 2/224 (0%)
Query: 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSG-LFDKAFSLLEHMKNTPDCQPDVNT 65
QP+ L + M D G + N +S+T L+SAYGR+ + D A MK +P ++
Sbjct: 429 QPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKV-GLKPSSHS 487
Query: 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125
Y+ LI + + +K A +M +GI+P+ TY +++DA+ R+ ++ ML
Sbjct: 488 YTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLML 547
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185
E + T N L F G +F G+QPS+ T+N+L+++Y + G
Sbjct: 548 REKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDA 607
Query: 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229
K+ +++ M + +TY+ +I AF R D K+ + ++M
Sbjct: 608 KLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMM 651
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 153/339 (45%), Gaps = 3/339 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+LG+ + + L + D+ + + + A +S S +D A+ + E M +
Sbjct: 247 LLGRERMADYILLLLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDKI-NVY 305
Query: 61 PDVNTYSILIKSCLKA-FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
PD T +ILI + KA + +V + MS +G++ + + L+ ++ + E +
Sbjct: 306 PDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALV 365
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
+M + + N + A+ S I+ +E + + + G++PS T+NIL+D+Y
Sbjct: 366 IQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYA 425
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY-LFRLMRSERIKPSC 238
+ + + ++ M+ + +Y +I A+GR + M F M+ +KPS
Sbjct: 426 RRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSS 485
Query: 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298
+ +L+ AY +G EK + + I + ++DA+ R ++ + ++
Sbjct: 486 HSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKL 545
Query: 299 MQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337
M + K ++TY T++ ++ G+ A++ KM
Sbjct: 546 MLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKM 584
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 126/298 (42%), Gaps = 45/298 (15%)
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS 126
S +KSCL + + +Q + S R +V + L GR +M + L L +
Sbjct: 215 SGFVKSCLYFYEWMSLQ----EPSLASPRACSVLFTLL----GRERMADYILLLLSNLPD 266
Query: 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH--- 183
++ DV N + S + D + YE + P T IL+ + KAG
Sbjct: 267 KEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAK 326
Query: 184 -----FEKMS----------------------------AVMEYMQKYHYSWTIVTYNIVI 210
FEKMS + M+K + YN ++
Sbjct: 327 EVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLM 386
Query: 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270
DA+ ++ ++++E LF MR + +KPS T L+ AY +P+ + ++LR +++ +
Sbjct: 387 DAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLE 446
Query: 271 LDTVFFNCLVDAYGRLKCFAEMKG-VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327
+ + CL+ AYGR K ++M M++ G KP +Y ++ AYS +G A
Sbjct: 447 PNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKA 504
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 158/328 (48%), Gaps = 10/328 (3%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
++A ++F+ M + GC +F L+ YG+ G +++ LL+ M QP+ T +I
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 465
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME-LTLVKMLSE 127
L+++ ++ ++ M + G++P+ VT+NTL AY R E + + +ML
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHN 525
Query: 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKM 187
+P+V T + + G+++ + + + + G+ P++ FN L+ + + +
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 585
Query: 188 SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247
V++ M+++ +VT++ +++A+ GD+K+ E ++ M I P L +
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645
Query: 248 YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA-EMKGVLEVMQQR---- 302
Y AG+PEK +L + + + V + ++ + C A EMK ++V ++
Sbjct: 646 YARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGW----CSAGEMKKAMQVYKKMCGIV 701
Query: 303 GCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
G P+ TY T++ + A+E
Sbjct: 702 GLSPNLTTYETLIWGFGEAKQPWKAEEL 729
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 153/334 (45%), Gaps = 7/334 (2%)
Query: 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY 66
+P++AH +F +++EG + ++T L++A R F SL+ ++ +PD +
Sbjct: 334 RPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKN-GLKPDTILF 392
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS 126
+ +I + ++ D+ + M G +P T+NTLI YG+ E L ML
Sbjct: 393 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLR 452
Query: 127 ED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH-- 183
++ +P+ T N ++A+ N +I+ K QS G++P + TFN L +Y + G
Sbjct: 453 DEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTC 512
Query: 184 -FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
E M ++ M + T +++ + G +++ F M+ + P+
Sbjct: 513 TAEDM--IIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFN 570
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
SL++ + + + +G V+ ++ + D V F+ L++A+ + + + M +
Sbjct: 571 SLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEG 630
Query: 303 GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
G PD + + + Y+ G A++ + + K
Sbjct: 631 GIDPDIHAFSILAKGYARAGEPEKAEQILNQMRK 664
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 143/315 (45%), Gaps = 44/315 (13%)
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
DV + + L+ ++ + ++ + + +G +P+ +TY TL+ A R K F + +
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 377
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
K+ +PD N + A SG +D K +EK + +G +P+ +TFN L+ YGK
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437
Query: 182 GHFEKMSAVMEYM-----------------------QKYHYSWTI-------------VT 205
G E+ S +++ M +K +W I VT
Sbjct: 438 GKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVT 497
Query: 206 YNIVIDAFGRAGDLKQME-YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRF- 263
+N + A+ R G E + M ++KP+ T ++V Y GK E+ LRF
Sbjct: 498 FNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEE---ALRFF 554
Query: 264 --IDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321
+ + + FN L+ + + + V+++M++ G KPD VT+ T++ A+S+
Sbjct: 555 YRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSV 614
Query: 322 G-MKNHAKEFQDLVE 335
G MK + + D++E
Sbjct: 615 GDMKRCEEIYTDMLE 629
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 103/240 (42%), Gaps = 2/240 (0%)
Query: 14 LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC 73
+ M+ N ++ +++ Y G ++A MK P++ ++ LIK
Sbjct: 518 IIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKEL-GVHPNLFVFNSLIKGF 576
Query: 74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV 133
L D V ++ M G++P+ VT++TL++A+ E ML +PD+
Sbjct: 577 LNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDI 636
Query: 134 WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY 193
+ + + +G+ + E+ + + G++P++ + ++ + AG +K V +
Sbjct: 637 HAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKK 696
Query: 194 M-QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG 252
M S + TY +I FG A + E L + M + + P+ T+ + + G
Sbjct: 697 MCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIADGWKSIG 756
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
++ E++ M++ G D + +F+ L Y R+G +KA +L M+ +P+V Y+
Sbjct: 618 KRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKF-GVRPNVVIYTQ 676
Query: 69 LIKSCLKAFAFDKVQALLSDM-STQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127
+I A K + M G+ PN TY TLI +G AK + E L M +
Sbjct: 677 IISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGK 736
Query: 128 DCEPDVWTMNCTLRAFGNSG 147
+ P TM + + G
Sbjct: 737 NVVPTRKTMQLIADGWKSIG 756
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 154/341 (45%), Gaps = 9/341 (2%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
LG+ KQ ++L MV +GC NT ++ L+ +YGR+ ++A ++ M+ C+P
Sbjct: 374 LGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEA-GCKP 432
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
D TY LI KA D + M G+ P+T TY+ +I+ G+A
Sbjct: 433 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 492
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
+M+ + C P++ T N + + K Y Q+AG +P T++I+++ G
Sbjct: 493 CEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHC 552
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
G+ E+ AV MQ+ ++ Y +++D +G+AG++++ ++ M ++P+ T
Sbjct: 553 GYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTC 612
Query: 242 CSLVRAYGHAGKP----EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297
SL+ + K E L ++L + T+ +C D +L +M +
Sbjct: 613 NSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKL----DMGFCGQ 668
Query: 298 VMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338
+M G + ++NHA F DL+ D
Sbjct: 669 LMASTGHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSED 709
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 129/276 (46%)
Query: 43 FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN 102
+ A +K P + D +TY+ ++ + +A F + LL +M G +PNTVTYN
Sbjct: 344 YGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYN 403
Query: 103 TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162
LI +YGRA E +M C+PD T + +G +D Y++ Q+
Sbjct: 404 RLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAG 463
Query: 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222
G+ P T++++++ GKAGH + M + +VTYNI++D +A + +
Sbjct: 464 GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNA 523
Query: 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282
L+R M++ +P VT ++ GH G E+ +V + + + D + LVD
Sbjct: 524 LKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDL 583
Query: 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318
+G+ + + M G +P+ T +++ +
Sbjct: 584 WGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTF 619
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 107/230 (46%)
Query: 93 GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTM 152
G + + TY T++ GRAK F + L +M+ + C+P+ T N + ++G + ++
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEA 418
Query: 153 EKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212
+ + Q AG +P T+ L+D + KAG + + + MQ S TY+++I+
Sbjct: 419 MNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINC 478
Query: 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD 272
G+AG L LF M + P+ VT ++ + A + + R + N+ D
Sbjct: 479 LGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPD 538
Query: 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322
V ++ +++ G E + V MQQ+ PD+ Y +V + G
Sbjct: 539 KVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAG 588
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 149/322 (46%), Gaps = 4/322 (1%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
LG+ K+ AH L M +G + S++ +++ Y R G DK + L+E MK +P
Sbjct: 259 LGRIKE---AHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRK-GLKP 314
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
+ Y +I + + + S+M QGI P+TV Y TLID + +
Sbjct: 315 NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
+M S D PDV T + F G + K + + G++P TF L++ Y KA
Sbjct: 375 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA 434
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
GH + V +M + S +VTY +ID + GDL L M ++P+ T
Sbjct: 435 GHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTY 494
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
S+V +G E+ ++ + + + DTV + L+DAY + + + +L+ M
Sbjct: 495 NSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG 554
Query: 302 RGCKPDKVTYRTMVRAYSTNGM 323
+G +P VT+ ++ + +GM
Sbjct: 555 KGLQPTIVTFNVLMNGFCLHGM 576
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 141/299 (47%), Gaps = 1/299 (0%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A +LF M +G + ++ +FT L++ Y ++G AF + HM C P+V TY+ L
Sbjct: 404 EAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA-GCSPNVVTYTTL 462
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
I K D LL +M G++PN TYN++++ ++ E + + +
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
D T + A+ SG++D ++ ++ G+QP+I TFN+L++ + G E
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 582
Query: 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249
++ +M + T+N ++ + +LK +++ M S + P T +LV+ +
Sbjct: 583 LLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC 642
Query: 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
A ++ + + + + ++ L+ + + K F E + V + M++ G DK
Sbjct: 643 KARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADK 701
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 142/318 (44%), Gaps = 3/318 (0%)
Query: 3 GKCKQPE--KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK+ + A + F M + ++TA++S + + G +A L M +
Sbjct: 360 GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM-FCKGLE 418
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PD T++ LI KA + + M G PN VTY TLID +
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 478
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
L +M +P+++T N + SG I+ K +F++AG+ T+ L+D+Y K
Sbjct: 479 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 538
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
+G +K +++ M TIVT+N++++ F G L+ E L M ++ I P+ T
Sbjct: 539 SGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 598
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
SLV+ Y + ++ + + + + D + LV + + + E + + M+
Sbjct: 599 FNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMK 658
Query: 301 QRGCKPDKVTYRTMVRAY 318
+G TY +++ +
Sbjct: 659 GKGFSVSVSTYSVLIKGF 676
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 108/261 (41%)
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
+V +Y+I+I + + LL M +G P+ ++Y+T+++ Y R ++ +
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
M + +P+ + + ++ E+ + + GI P + L+D + K
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
G S M + ++TY +I F + GD+ + LF M + ++P VT
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
L+ Y AG + V + + + V + L+D + +L M +
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484
Query: 302 RGCKPDKVTYRTMVRAYSTNG 322
G +P+ TY ++V +G
Sbjct: 485 IGLQPNIFTYNSIVNGLCKSG 505
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 96/238 (40%)
Query: 93 GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTM 152
G+ N +YN +I + E L+ M + PDV + + + + G++D +
Sbjct: 241 GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKV 300
Query: 153 EKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212
K E + G++P+ + ++ + + M + V Y +ID
Sbjct: 301 WKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDG 360
Query: 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD 272
F + GD++ F M S I P +T +++ + G + G + + + D
Sbjct: 361 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 420
Query: 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
+V F L++ Y + + V M Q GC P+ VTY T++ G + A E
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 478
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 86/186 (46%), Gaps = 3/186 (1%)
Query: 147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ--KYHYSWTIV 204
G + + +EK + G+ S+++ N+ L K ++ +A++ + + + W +
Sbjct: 189 GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDC-YKTATAIIVFREFPEVGVCWNVA 247
Query: 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264
+YNIVI + G +K+ +L LM + P ++ ++V Y G+ +K+ ++ +
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307
Query: 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324
+ ++ + ++ R+ AE + M ++G PD V Y T++ + G
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367
Query: 325 NHAKEF 330
A +F
Sbjct: 368 RAASKF 373
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 3/175 (1%)
Query: 5 CKQPE--KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
CK E KA E+ + M+ +G +F L++ + G+ + LL M P+
Sbjct: 537 CKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWML-AKGIAPN 595
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
T++ L+K A+ DM ++G+ P+ TY L+ + +A+ E
Sbjct: 596 ATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQ 655
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177
+M + V T + ++ F + + +++ + G+ F+ D+
Sbjct: 656 EMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDT 710
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A +++ M G + +++ L+ + ++ +A+ L + MK V+TYS+LI
Sbjct: 615 ATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK-GFSVSVSTYSVLI 673
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK 112
K LK F + + + M +G+ + ++ D + K
Sbjct: 674 KGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGK 715
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 163/359 (45%), Gaps = 39/359 (10%)
Query: 7 QPEKAHELFQAMVDE---GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
+ ++A EL M D+ G + S+T +++ + + G DKA+S M + PDV
Sbjct: 173 RSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR-GILPDV 231
Query: 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123
TY+ +I + KA A DK +L+ M G+ P+ +TYN+++ Y + E L K
Sbjct: 232 VTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291
Query: 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
M S+ EPDV T + + +G+ K ++ G++P I T+ LL Y G
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351
Query: 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT--- 240
+M +++ M + ++I+I A+ + G + Q +F MR + + P+ VT
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411
Query: 241 ----LC----------------------------SLVRAYGHAGKPEKLGSVLRFIDNSD 268
LC SL+ K E+ ++ + +
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471
Query: 269 IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327
I L+T+FFN ++D++ + E + + E+M + G KP+ +TY T++ Y G + A
Sbjct: 472 ICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEA 530
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 137/332 (41%), Gaps = 5/332 (1%)
Query: 14 LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKN--TPDCQPDVNTYSILIK 71
+ + M + GC N S+ LL +A LL M + PDV +Y+ +I
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 72 SCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEP 131
K DK + +M +GI P+ VTYN++I A +A+ + L M+ P
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264
Query: 132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVM 191
D T N L + +SGQ +K +S G++P + T+++L+D K G + +
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIF 324
Query: 192 EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA 251
+ M K I TY ++ + G L +M L LM I P L+ AY
Sbjct: 325 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQ 384
Query: 252 GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTY 311
GK ++ V + + + V + ++ + + E M G P + Y
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 444
Query: 312 RTMVRAYSTNGMKNHAKEFQDLVEKMDE-TCL 342
+++ T A+E ++E +D CL
Sbjct: 445 NSLIHGLCTCNKWERAEEL--ILEMLDRGICL 474
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 144/324 (44%), Gaps = 1/324 (0%)
Query: 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY 66
QP++A + M +G + + +++ L+ ++G +A + + M +P++ TY
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR-GLKPEITTY 339
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS 126
L++ A ++ LL M GI P+ ++ LI AY + + L KM
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQ 399
Query: 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
+ P+ T + SG+++ +E+ G+ P +N L+ +E+
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 459
Query: 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
++ M + +N +ID+ + G + + E LF LM +KP+ +T +L+
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLIN 519
Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
Y AGK ++ +L + + + +TV ++ L++ Y ++ + + + M+ G P
Sbjct: 520 GYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSP 579
Query: 307 DKVTYRTMVRAYSTNGMKNHAKEF 330
D +TY +++ AKE
Sbjct: 580 DIITYNIILQGLFQTRRTAAAKEL 603
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 143/332 (43%), Gaps = 5/332 (1%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
G+C + A ++F +M G ++ LL Y G + LL+ M PD
Sbjct: 315 GRCME---ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPD 370
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
+SILI + K D+ + S M QG+ PN VTY +I ++ + L
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
+M+ E P N + + + E+ + GI + FN ++DS+ K G
Sbjct: 431 QMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG 490
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
+ + E M + ++TYN +I+ + AG + + L M S +KP+ VT
Sbjct: 491 RVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYS 550
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
+L+ Y + E + + +++S + D + +N ++ + + A K + + +
Sbjct: 551 TLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITES 610
Query: 303 GCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDL 333
G + + TY ++ N + + A + FQ+L
Sbjct: 611 GTQIELSTYNIILHGLCKNKLTDDALQMFQNL 642
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 140/320 (43%), Gaps = 7/320 (2%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMK--NTPDCQPDVNTY 66
E A +F ++ G A+ L+ R A S M + PD+ TY
Sbjct: 32 EDARHVFDELLRRGRGASIYGLNRALADVARDSP-AAAVSRYNRMARAGADEVTPDLCTY 90
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE-MELTLVKML 125
ILI C +A D A L ++ +G R + + + L+ K ++ M++ L +M
Sbjct: 91 GILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 150
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF---QSAGIQPSINTFNILLDSYGKAG 182
C P+V++ N L+ + + + + G P + ++ +++ + K G
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEG 210
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
+K + M +VTYN +I A +A + + + M + P C+T
Sbjct: 211 DSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
S++ Y +G+P++ L+ + + + D V ++ L+D + E + + + M +R
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330
Query: 303 GCKPDKVTYRTMVRAYSTNG 322
G KP+ TY T+++ Y+T G
Sbjct: 331 GLKPEITTYGTLLQGYATKG 350
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 21/342 (6%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
++A +F M +G + N ++ A++ +SG + A E M + P Y+
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGLSPGNIVYNS 446
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LI +++ + L+ +M +GI NT+ +N++ID++ + E E M+
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
+P+V T N + + +G++D K S G++P+ T++ L++ Y K E
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL-CSLVRA 247
+ + M+ S I+TYNI++ + + L+ RI S + S
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY-----VRITESGTQIELSTYNI 621
Query: 248 YGHAGKPEKL-GSVLRFIDN---SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
H KL L+ N D+ L+ FN ++DA ++ E K + G
Sbjct: 622 ILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 681
Query: 304 CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMK 345
P+ TYR M G L+E++D+ L+M+
Sbjct: 682 LVPNYWTYRLMAENIIGQG----------LLEELDQLFLSME 713
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 116/279 (41%), Gaps = 3/279 (1%)
Query: 5 CKQPE--KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
CK+ ++ +LF+ MV G N ++ L++ Y +G D+A LL M + +P+
Sbjct: 487 CKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSV-GLKPN 545
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
TYS LI K + L +M + G+ P+ +TYN ++ + + A + V
Sbjct: 546 TVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 605
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
++ + ++ T N L + D + ++ ++ TFNI++D+ K G
Sbjct: 606 RITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVG 665
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
++ + TY ++ + G L++++ LF M L
Sbjct: 666 RNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLN 725
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281
+VR G+ + G+ L ID L+ + +D
Sbjct: 726 FIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 143/308 (46%), Gaps = 3/308 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E A ++F + GC + ++ LL AYG+SG D+ F L + M +T +C+ + T++I
Sbjct: 802 EIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM-STHECEANTITHNI 860
Query: 69 LIKSCLKAFAFDKVQALLSD-MSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127
+I +KA D L D MS + P TY LID ++ E + ML
Sbjct: 861 VISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDY 920
Query: 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKM 187
C P+ N + FG +G+ D +++ G++P + T+++L+D G ++
Sbjct: 921 GCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEG 980
Query: 188 SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER-IKPSCVTLCSLVR 246
+ +++ + +V YN++I+ G++ L++ LF M++ R I P T SL+
Sbjct: 981 LHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLIL 1040
Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
G AG E+ G + I + + + FN L+ Y V + M G P
Sbjct: 1041 NLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSP 1100
Query: 307 DKVTYRTM 314
+ TY +
Sbjct: 1101 NTGTYEQL 1108
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 155/337 (45%), Gaps = 2/337 (0%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+LG+ + +A+E+ + M DEGC + ++T L+ A + D A + E MK T +
Sbjct: 267 VLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMK-TGRHK 325
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PD TY L+ D V+ S+M G P+ VT+ L+DA +A F E T
Sbjct: 326 PDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDT 385
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
L M + P++ T N + ++D + + +S G++P+ T+ + +D YGK
Sbjct: 386 LDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGK 445
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
+G E M+ + IV N + + +AG ++ + +F ++ + P VT
Sbjct: 446 SGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVT 505
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
+++ Y G+ ++ +L + + D + N L++ + E + M+
Sbjct: 506 YNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMK 565
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDLVEK 336
+ KP VTY T++ NG A E F+ +V+K
Sbjct: 566 EMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQK 602
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 144/314 (45%), Gaps = 1/314 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
LGK + + L + M G N +FT + GR+G ++A+ +L+ M + C P
Sbjct: 233 LGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDE-GCGP 291
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
DV TY++LI + A D + + M T +P+ VTY TL+D + + ++
Sbjct: 292 DVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFW 351
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
+M + PDV T + A +G + + GI P+++T+N L+ +
Sbjct: 352 SEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRV 411
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
+ + M+ T TY + ID +G++GD F M+++ I P+ V
Sbjct: 412 HRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVAC 471
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
+ + + AG+ + + + + ++ D+V +N ++ Y ++ E +L M +
Sbjct: 472 NASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMME 531
Query: 302 RGCKPDKVTYRTMV 315
GC+PD + +++
Sbjct: 532 NGCEPDVIVVNSLI 545
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 149/329 (45%), Gaps = 1/329 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+ + + M +G + +FT L+ A ++G F +AF L+ M++ P+++TY+
Sbjct: 345 DSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQ-GILPNLHTYNT 403
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LI L+ D L +M + G++P TY ID YG++ T KM ++
Sbjct: 404 LICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG 463
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
P++ N +L + +G+ ++ + + G+ P T+N+++ Y K G ++
Sbjct: 464 IAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAI 523
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
++ M + ++ N +I+ +A + + +F M+ ++KP+ VT +L+
Sbjct: 524 KLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGL 583
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
G GK ++ + + +T+ FN L D + +L M GC PD
Sbjct: 584 GKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDV 643
Query: 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337
TY T++ NG A F ++K+
Sbjct: 644 FTYNTIIFGLVKNGQVKEAMCFFHQMKKL 672
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 132/299 (44%), Gaps = 14/299 (4%)
Query: 46 AFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLI 105
A +L E QP + TY++LI L+A + Q + + + G P+ TYN L+
Sbjct: 768 ARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLL 827
Query: 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQI-DTMEKCYEKFQSAGI 164
DAYG++ E+ +M + +CE + T N + +G + D ++ Y+
Sbjct: 828 DAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDF 887
Query: 165 QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY 224
P+ T+ L+D K+G + + E M Y YNI+I+ FG+AG+
Sbjct: 888 SPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACA 947
Query: 225 LFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284
LF+ M E ++P T LV G+ ++ + + S + D V +N +++ G
Sbjct: 948 LFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLG 1007
Query: 285 R-------LKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
+ L F EMK RG PD TY +++ GM A + + +++
Sbjct: 1008 KSHRLEEALVLFNEMK------TSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1060
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 121/254 (47%), Gaps = 1/254 (0%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
GK + ++ EL++ M C+ANT + ++S ++G D A L + + D P
Sbjct: 831 GKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPT 890
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
TY LI K+ + + L M G RPN YN LI+ +G+A
Sbjct: 891 ACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFK 950
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
+M+ E PD+ T + + G++D +++ + +G+ P + +N++++ GK+
Sbjct: 951 RMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSH 1010
Query: 183 HFEKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
E+ + M+ + + TYN +I G AG +++ ++ ++ ++P+ T
Sbjct: 1011 RLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTF 1070
Query: 242 CSLVRAYGHAGKPE 255
+L+R Y +GKPE
Sbjct: 1071 NALIRGYSLSGKPE 1084
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 2/206 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
L K + +A +LF+ M+D GC N + L++ +G++G D A +L + M +P
Sbjct: 901 LSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVK-EGVRP 959
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
D+ TYS+L+ D+ ++ G+ P+ V YN +I+ G++ E +
Sbjct: 960 DLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLF 1019
Query: 122 VKM-LSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+M S PD++T N + G +G ++ K Y + Q AG++P++ TFN L+ Y
Sbjct: 1020 NEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSL 1079
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTY 206
+G E AV + M +S TY
Sbjct: 1080 SGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
G KQ A + M + G N S+ L+ +S +A + M +P
Sbjct: 167 GGLKQAPYA---LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMI-LEGFRPS 222
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
+ TYS L+ K D V LL +M T G++PN T+ I GRA E L
Sbjct: 223 LQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILK 282
Query: 123 KMLSEDCEPDVWTMN------CTLRA-----------------------------FGNSG 147
+M E C PDV T CT R F ++
Sbjct: 283 RMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNR 342
Query: 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207
+D++++ + + + G P + TF IL+D+ KAG+F + ++ M+ + TYN
Sbjct: 343 DLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYN 402
Query: 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267
+I R L LF M S +KP+ T + YG +G +
Sbjct: 403 TLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTK 462
Query: 268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327
I + V N + + + E K + ++ G PD VTY M++ YS G + A
Sbjct: 463 GIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEA 522
Query: 328 KEFQDLVEKMDETC 341
+ L E M+ C
Sbjct: 523 IKL--LSEMMENGC 534
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 113/254 (44%)
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
D NTY + KS + L M G N +YN LI +++ E
Sbjct: 152 DTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVY 211
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
+M+ E P + T + + G ID++ ++ ++ G++P++ TF I + G+A
Sbjct: 212 RRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRA 271
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
G + +++ M +VTY ++IDA A L + +F M++ R KP VT
Sbjct: 272 GKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTY 331
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
+L+ + + + ++ + D V F LVDA + F E L+VM+
Sbjct: 332 ITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD 391
Query: 302 RGCKPDKVTYRTMV 315
+G P+ TY T++
Sbjct: 392 QGILPNLHTYNTLI 405
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 1/198 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
L K + +A ++F + D G ++ ++ ++ Y + G D+A LL M C+P
Sbjct: 478 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMEN-GCEP 536
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
DV + LI + KA D+ + M ++P VTYNTL+ G+ E
Sbjct: 537 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 596
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
M+ + C P+ T N + ++ K K G P + T+N ++ K
Sbjct: 597 EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKN 656
Query: 182 GHFEKMSAVMEYMQKYHY 199
G ++ M+K Y
Sbjct: 657 GQVKEAMCFFHQMKKLVY 674
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 35/237 (14%)
Query: 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194
T N L A G+++ M ++ Q I+ NT+ + S G ++ + M
Sbjct: 120 TCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKM 179
Query: 195 QKYHYSWTIVTYN---------------------IVIDAF--------------GRAGDL 219
+++ + +YN ++++ F G+ D+
Sbjct: 180 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDI 239
Query: 220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCL 279
+ L + M + +KP+ T +R G AGK + +L+ +D+ D V + L
Sbjct: 240 DSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVL 299
Query: 280 VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
+DA + K V E M+ KPD+VTY T++ +S N + K+F +EK
Sbjct: 300 IDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEK 356
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 148/310 (47%), Gaps = 1/310 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+ A LF M +G A+ ++++L+ G +D +L M + PDV T+S
Sbjct: 262 DDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR-NIIPDVVTFSA 320
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LI +K + + L ++M T+GI P+T+TYN+LID + + E M+S+
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
CEPD+ T + + ++ + ++D + + + S G+ P+ T+N L+ + ++G
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 440
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
+ + M ++VTY I++D G+L + +F M+ R+ ++
Sbjct: 441 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
+A K + S+ + + + D V +N ++ + +E + M++ GC PD
Sbjct: 501 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDD 560
Query: 309 VTYRTMVRAY 318
TY ++RA+
Sbjct: 561 FTYNILIRAH 570
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 137/317 (43%), Gaps = 1/317 (0%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A +LF+ M + A+ ++ ++ + + G FD A SL M+ + DV TYS LI
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME-MKGIKADVVTYSSLI 287
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
+D +L +M + I P+ VT++ LID + + E + +M++
Sbjct: 288 GGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIA 347
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190
PD T N + F + + ++ S G +P I T++IL++SY KA + +
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250
+ +TYN ++ F ++G L + LF+ M S + PS VT L+
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 467
Query: 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT 310
G+ K + + S + L +N ++ + + + +G KPD VT
Sbjct: 468 NGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 527
Query: 311 YRTMVRAYSTNGMKNHA 327
Y M+ G + A
Sbjct: 528 YNVMIGGLCKKGSLSEA 544
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 139/318 (43%), Gaps = 3/318 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
+ + KQ + + M G + + + T +++ Y R AFS+L +P
Sbjct: 80 VARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKL-GYEP 138
Query: 62 DVNTYSILIKS-CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
D T+S L+ CL+ + V AL+ M RP+ VT +TLI+ +E +
Sbjct: 139 DTITFSTLVNGFCLEGRVSEAV-ALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+ +M+ +PD T L SG + K + I+ S+ ++I++DS K
Sbjct: 198 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK 257
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
G F+ ++ M+ +VTY+ +I G + R M I P VT
Sbjct: 258 DGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVT 317
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
+L+ + GK + + + I DT+ +N L+D + + C E + ++M
Sbjct: 318 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 377
Query: 301 QRGCKPDKVTYRTMVRAY 318
+GC+PD VTY ++ +Y
Sbjct: 378 SKGCEPDIVTYSILINSY 395
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 147/328 (44%), Gaps = 9/328 (2%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A +LF++M+ F L SA R+ +D + M+ + D+ T +I+I
Sbjct: 54 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGME-LNGIEHDMYTMTIMI 112
Query: 71 KS-CLKA---FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS 126
C K FAF ++L G P+T+T++TL++ + +E + +M+
Sbjct: 113 NCYCRKKKLLFAF----SVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 168
Query: 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
PD+ T++ + G++ ++ G QP T+ +L+ K+G+
Sbjct: 169 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 228
Query: 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
+ M++ + ++V Y+IVID+ + G LF M + IK VT SL+
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 288
Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
+ GK + +LR + +I+ D V F+ L+D + + E K + M RG P
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348
Query: 307 DKVTYRTMVRAYSTNGMKNHAKEFQDLV 334
D +TY +++ + + A + DL+
Sbjct: 349 DTITYNSLIDGFCKENCLHEANQMFDLM 376
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 146/342 (42%), Gaps = 26/342 (7%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A L MV+ + + + L++ G +A L++ M QPD TY +
Sbjct: 158 EAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEY-GFQPDEVTYGPV 216
Query: 70 I----KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR-------AKMFAEME 118
+ KS A A D L M + I+ + V Y+ +ID+ + +F EME
Sbjct: 217 LNRLCKSGNSALALD----LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 272
Query: 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178
+ +K DV T + + N G+ D K + I P + TF+ L+D +
Sbjct: 273 MKGIK-------ADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 325
Query: 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238
K G + + M + +TYN +ID F + L + +F LM S+ +P
Sbjct: 326 VKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDI 385
Query: 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298
VT L+ +Y A + + + R I + ++ +T+ +N LV + + K + +
Sbjct: 386 VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE 445
Query: 299 MQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340
M RG P VTY ++ NG N A E + EKM ++
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALE---IFEKMQKS 484
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 5/179 (2%)
Query: 1 MLGKCKQPE--KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPD 58
+LG C+ + A ELFQ MV G + ++ LL +G +KA + E M+ +
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR- 485
Query: 59 CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME 118
+ Y+I+I A D +L +S +G++P+ VTYN +I + +E +
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEAD 545
Query: 119 LTLVKMLSEDCEPDVWTMNCTLRA-FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD 176
+ KM + C PD +T N +RA G SG I ++E E+ + G +T +++D
Sbjct: 546 MLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE-LIEEMKVCGFSADSSTIKMVID 603
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 143/308 (46%), Gaps = 3/308 (0%)
Query: 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84
A + ++ + R D+A L M+ C+PD TY LI + +A +
Sbjct: 141 ARNDIYNMMIRLHARHNWVDQARGLFFEMQKW-SCKPDAETYDALINAHGRAGQWRWAMN 199
Query: 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144
L+ DM I P+ TYN LI+A G + + E KM PD+ T N L A+
Sbjct: 200 LMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYK 259
Query: 145 NSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT-- 202
+ Q +E + A ++P TFNI++ K G + + M++
Sbjct: 260 SGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPD 319
Query: 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR 262
+VT+ ++ + G+++ +F M +E +KP+ V+ +L+ AY G SVL
Sbjct: 320 VVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLG 379
Query: 263 FIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322
I + I+ D V + CL+++YGR + + K V +M++ KP+ VTY ++ AY +NG
Sbjct: 380 DIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG 439
Query: 323 MKNHAKEF 330
A E
Sbjct: 440 FLAEAVEI 447
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/379 (22%), Positives = 161/379 (42%), Gaps = 73/379 (19%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
++A LF M C + +++ AL++A+GR+G + A +L++ M P +TY+
Sbjct: 160 DQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAA-IAPSRSTYNN 218
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE------------ 116
LI +C + + + + M+ G+ P+ VT+N ++ AY + +++
Sbjct: 219 LINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAK 278
Query: 117 ----------------------MELTLVKMLSE---DCEPDVWTMNCTLRAFGNSGQIDT 151
L L + E +C PDV T + + G+I+
Sbjct: 279 VRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIEN 338
Query: 152 MEKCYEKFQSAGIQPSINTFNI-----------------------------------LLD 176
+E + G++P+I ++N LL+
Sbjct: 339 CRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLN 398
Query: 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 236
SYG++ K V M+K +VTYN +IDA+G G L + +FR M + IKP
Sbjct: 399 SYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKP 458
Query: 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296
+ V++C+L+ A + K + +VL + I L+T +N + +Y + +
Sbjct: 459 NVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALY 518
Query: 297 EVMQQRGCKPDKVTYRTMV 315
+ M+++ K D VT+ ++
Sbjct: 519 QSMRKKKVKADSVTFTILI 537
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 157/322 (48%), Gaps = 3/322 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEG--CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC 59
L K Q +A +LF +M ++ C + +FT+++ Y G + ++ E M
Sbjct: 293 LSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMV-AEGL 351
Query: 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
+P++ +Y+ L+ + ++L D+ GI P+ V+Y L+++YGR++ + +
Sbjct: 352 KPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKE 411
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
+ M E +P+V T N + A+G++G + + + + + GI+P++ + LL +
Sbjct: 412 VFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACS 471
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
++ + V+ Q + YN I ++ A +L++ L++ MR +++K V
Sbjct: 472 RSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSV 531
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T L+ K + S L+ +++ I L ++ ++ AY + E + + M
Sbjct: 532 TFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQM 591
Query: 300 QQRGCKPDKVTYRTMVRAYSTN 321
+ GC+PD + Y +M+ AY+ +
Sbjct: 592 KMAGCEPDVIAYTSMLHAYNAS 613
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 146/330 (44%), Gaps = 1/330 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E +F+AMV EG N S+ AL+ AY G+ A S+L +K PDV +Y+
Sbjct: 337 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQN-GIIPDVVSYTC 395
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
L+ S ++ K + + M + +PN VTYN LIDAYG AE +M +
Sbjct: 396 LLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDG 455
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
+P+V ++ L A S + ++ QS GI + +N + SY A EK
Sbjct: 456 IKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAI 515
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
A+ + M+K VT+ I+I R + + M I + S++ AY
Sbjct: 516 ALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAY 575
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
G+ + S+ + + D + + ++ AY + + + + M+ G +PD
Sbjct: 576 SKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDS 635
Query: 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338
+ ++RA++ G ++ DL+ + +
Sbjct: 636 IACSALMRAFNKGGQPSNVFVLMDLMREKE 665
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 148/346 (42%), Gaps = 14/346 (4%)
Query: 1 MLGKCKQPEK---AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP 57
+L C + +K + A G + NT ++ + + +Y + +KA +L + M+
Sbjct: 466 LLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKK- 524
Query: 58 DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEM 117
+ D T++ILI + + + + L +M I Y++++ AY + E
Sbjct: 525 KVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEA 584
Query: 118 ELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177
E +M CEPDV L A+ S + + + + ++ GI+P + L+ +
Sbjct: 585 ESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRA 644
Query: 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237
+ K G + +M+ M++ +T + + A + K+ L ++M S
Sbjct: 645 FNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLS 704
Query: 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD---AYGRLKCFAEMKG 294
++ +G +GK E + + I S + ++ + L++ A G + + E
Sbjct: 705 IGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIE--- 761
Query: 295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340
VLE M G +P YR ++ + G ++ EF+ L+ + E+
Sbjct: 762 VLEWMSGAGIQPSNQMYRDII----SFGERSAGIEFEPLIRQKLES 803
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 152 MEKCYEKFQSAGIQPSI----NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207
+E C F+ IQ + + +N+++ + + ++ + MQK+ TY+
Sbjct: 123 IELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYD 182
Query: 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267
+I+A GRAG + L M I PS T +L+ A G +G + V + + ++
Sbjct: 183 ALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDN 242
Query: 268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327
+ D V N ++ AY + +++ E+M+ +PD T+ ++ S G + A
Sbjct: 243 GVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQA 302
Query: 328 KE-FQDLVEKMDETCLAMKRPD 348
+ F + EK E RPD
Sbjct: 303 LDLFNSMREKRAEC-----RPD 319
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 151/334 (45%), Gaps = 7/334 (2%)
Query: 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY 66
+P+KA +LF M + GC + SF +L +S +KA+ L ++ D TY
Sbjct: 141 KPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSV--DTVTY 198
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS 126
++++ K +L +M +GI PN TYNT++ + RA ++M
Sbjct: 199 NVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKK 258
Query: 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
DCE DV T + FG +G+I +++ G+ PS+ T+N ++ K + E
Sbjct: 259 RDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVEN 318
Query: 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
+ E M + Y + TYN++I AG+ + E L + M +E +P+ T ++R
Sbjct: 319 AVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIR 378
Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM----KGVLEVMQQR 302
Y + EK + + + D + + +N L+ K +M K +LE M +R
Sbjct: 379 YYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLE-MVER 437
Query: 303 GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
G P K T+ ++ G + AKE L K
Sbjct: 438 GFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSK 471
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 1/207 (0%)
Query: 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT 65
K+ KA E+ + MV+ G + N ++ +L + R+G A+ MK DC+ DV T
Sbjct: 209 KRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKR-DCEIDVVT 267
Query: 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125
Y+ ++ A + + + +M +G+ P+ TYN +I + + +M+
Sbjct: 268 YTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMV 327
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185
EP+V T N +R ++G+ E+ ++ ++ G +P+ T+N+++ Y + E
Sbjct: 328 RRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVE 387
Query: 186 KMSAVMEYMQKYHYSWTIVTYNIVIDA 212
K + E M + TYNI+I
Sbjct: 388 KALGLFEKMGSGDCLPNLDTYNILISG 414
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 122/294 (41%), Gaps = 2/294 (0%)
Query: 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQAL 85
+ SF + R L +SL+ M++ P T++I+ + A DK L
Sbjct: 90 DASSFDLAIDIAARLHLHPTVWSLIHRMRSL-RIGPSPKTFAIVAERYASAGKPDKAVKL 148
Query: 86 LSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN 145
+M G + ++NT++D ++K E L + L D T N L +
Sbjct: 149 FLNMHEHGCFQDLASFNTILDVLCKSKR-VEKAYELFRALRGRFSVDTVTYNVILNGWCL 207
Query: 146 SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVT 205
+ + ++ GI P++ T+N +L + +AG M+K +VT
Sbjct: 208 IKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVT 267
Query: 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265
Y V+ FG AG++K+ +F M E + PS T ++++ E + +
Sbjct: 268 YTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMV 327
Query: 266 NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319
+ +N L+ F+ + +++ M+ GC+P+ TY M+R YS
Sbjct: 328 RRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYS 381
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 36/188 (19%)
Query: 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210
T+ + +S I PS TF I+ + Y AG +K + M ++ + ++N ++
Sbjct: 109 TVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTIL 168
Query: 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270
D ++ +++ LFR +R RF
Sbjct: 169 DVLCKSKRVEKAYELFRALRG------------------------------RF------S 192
Query: 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
+DTV +N +++ + +K + VL+ M +RG P+ TY TM++ + G HA EF
Sbjct: 193 VDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEF 252
Query: 331 QDLVEKMD 338
++K D
Sbjct: 253 FLEMKKRD 260
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 163/347 (46%), Gaps = 13/347 (3%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHM---KNTPDC 59
GKC A +F+ M G + + ++ +L + F +A + E + K +P
Sbjct: 188 GKCNN---AEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSP-L 243
Query: 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
+PD Y ++I KA ++K + + S M +G+ +TVTYN+L+ + E+
Sbjct: 244 KPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSF---ETSYKEVSK 300
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
+M D +PDV + ++A+G + + + +E+ AG++P+ +NILLD++
Sbjct: 301 IYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 360
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
+G E+ V + M++ + +Y ++ A+ A D++ E F+ ++ + +P+ V
Sbjct: 361 ISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIV 420
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T +L++ Y A EK+ V + S I + ++DA GR K F G + M
Sbjct: 421 TYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEM 480
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKR 346
+ G PD+ ++ ST AKE + +ET + R
Sbjct: 481 ESCGVPPDQKAKNVLLSLASTQDELEEAKELTGI---RNETATIIAR 524
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 6/266 (2%)
Query: 68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127
+LI + K F+ + +LS +S G PN ++Y L+++YGR E +M S
Sbjct: 144 MLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSS 203
Query: 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF---QSAGIQPSINTFNILLDSYGKAGHF 184
EP T L+ F + E+ +E + + ++P +++++ Y KAG++
Sbjct: 204 GPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNY 263
Query: 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244
EK V M + VTYN ++ +F + K++ ++ M+ I+P V+ L
Sbjct: 264 EKARKVFSSMVGKGVPQSTVTYNSLM-SFETS--YKEVSKIYDQMQRSDIQPDVVSYALL 320
Query: 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC 304
++AYG A + E+ SV + ++ + +N L+DA+ + K V + M++
Sbjct: 321 IKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRI 380
Query: 305 KPDKVTYRTMVRAYSTNGMKNHAKEF 330
PD +Y TM+ AY A++F
Sbjct: 381 FPDLWSYTTMLSAYVNASDMEGAEKF 406
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Query: 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230
F +L+ +YGK G+F V+ + K + +++Y +++++GR G E +FR M+
Sbjct: 142 FLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQ 201
Query: 231 SERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI---DNSDIMLDTVFFNCLVDAYGRLK 287
S +PS +T +++ + K ++ V + S + D ++ ++ Y +
Sbjct: 202 SSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAG 261
Query: 288 CFAEMKGVLEVMQQRGCKPDKVTYRTMV 315
+ + + V M +G VTY +++
Sbjct: 262 NYEKARKVFSSMVGKGVPQSTVTYNSLM 289
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Query: 187 MSAVMEYMQKYHYSWTI--VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244
+S ++E++ +Y W + + ++I A+G+ G+ E + ++ P+ ++ +L
Sbjct: 122 VSEILEWL-RYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTAL 180
Query: 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM---QQ 301
+ +YG GK ++ R + +S + + ++ + F E + V E + ++
Sbjct: 181 MESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKK 240
Query: 302 RGCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDLVEK 336
KPD+ Y M+ Y G A++ F +V K
Sbjct: 241 SPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGK 276
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 136/285 (47%), Gaps = 5/285 (1%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
LG+ KQ + ++L MV +GC NT ++ L+ +YGR+ +A ++ M+ C+P
Sbjct: 369 LGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEA-GCEP 427
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
D TY LI KA D + M G+ P+T TY+ +I+ G+A
Sbjct: 428 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLF 487
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
+M+ + C P++ T N + + +T K Y Q+AG QP T++I+++ G
Sbjct: 488 CEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHC 547
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT- 240
G E+ V MQ+ ++ Y +++D +G+AG++ + ++ M ++P+ T
Sbjct: 548 GFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTC 607
Query: 241 ---LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282
L + +R + + L S+L + + T+ +C DA
Sbjct: 608 NSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDA 652
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 129/276 (46%)
Query: 43 FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN 102
+ A +K P + D +TY+ ++ + +A F ++ LL +M G +PNTVTYN
Sbjct: 339 YANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYN 398
Query: 103 TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162
LI +YGRA E +M CEPD T + +G +D Y++ Q A
Sbjct: 399 RLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEA 458
Query: 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222
G+ P T++++++ GKAGH + M + +VT+NI+I +A + +
Sbjct: 459 GLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETA 518
Query: 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282
L+R M++ +P VT ++ GH G E+ V + + + D + LVD
Sbjct: 519 LKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDL 578
Query: 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318
+G+ + + M Q G +P+ T +++ +
Sbjct: 579 WGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTF 614
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 113/238 (47%)
Query: 93 GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTM 152
G + + TY T++ GRAK F E+ L +M+ + C+P+ T N + ++G + +
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEA 413
Query: 153 EKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212
+ + Q AG +P T+ L+D + KAG + + + MQ+ S TY+++I+
Sbjct: 414 MNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINC 473
Query: 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD 272
G+AG L LF M + P+ VT ++ + A E + R + N+ D
Sbjct: 474 LGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPD 533
Query: 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
V ++ +++ G E +GV MQ++ PD+ Y +V + G + A ++
Sbjct: 534 KVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQW 591
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 135/305 (44%), Gaps = 5/305 (1%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A +++Q M + G +T +++ +++ G++G A L M C P++ T++I+I
Sbjct: 448 AMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQ-GCTPNLVTFNIMI 506
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
KA ++ L DM G +P+ VTY+ +++ G E E +M ++
Sbjct: 507 ALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWV 566
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190
PD + +G +G +D + Y+ AG++P++ T N LL ++ + + +
Sbjct: 567 PDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNL 626
Query: 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250
++ M ++ TY +++ A M + +LM + P+ + L + A G
Sbjct: 627 LQSMLALGLHPSLQTYTLLLSCCTDARSNFDMGFCGQLM-AVSGHPAHMFLLKMPPA-GP 684
Query: 251 AGKP--EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
G+ + + + L F+ + D + +VD + E V EV + PD
Sbjct: 685 DGQKVRDHVSNFLDFMHSEDRESKRGLMDAVVDFLHKSGLKEEAGSVWEVAAGKNVYPDA 744
Query: 309 VTYRT 313
+ ++
Sbjct: 745 LREKS 749
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 185 EKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQME-------YLFRLMRSERIKP 236
E +S+++ + H + + + +DA+ LKQM+ + + L R K
Sbjct: 298 ENVSSILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLKRQPGFKH 357
Query: 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN---SDIMLDTVFFNCLVDAYGRLKCFAEMK 293
T ++V G+ G+ ++ G + + +D +TV +N L+ +YGR E
Sbjct: 358 DGHTYTTMV---GNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAM 414
Query: 294 GVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA 343
V MQ+ GC+PD+VTY T++ ++ G + A D+ ++M E L+
Sbjct: 415 NVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIA---MDMYQRMQEAGLS 461
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 157/340 (46%), Gaps = 8/340 (2%)
Query: 3 GKCKQPEK--AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK+ + A L M +A+ F ++ + + D A +L + M+ T +
Sbjct: 159 GLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME-TKGIR 217
Query: 61 PDVNTYSILIKSCLKAFA-FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
P+V TYS LI SCL ++ + LLSDM + I PN VT+N LIDA+ + F E E
Sbjct: 218 PNVVTYSSLI-SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 276
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
M+ +PD++T N + F ++D ++ +E S P ++T+N L+ +
Sbjct: 277 LHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFC 336
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K+ E + + M VTY +I GD + +F+ M S+ + P +
Sbjct: 337 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 396
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T L+ + GK EK V ++ S+I LD + +++ + + + +
Sbjct: 397 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 456
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339
+G KP+ VTY TM+ + K +E L++KM E
Sbjct: 457 SLKGVKPNVVTYNTMISGLCS---KRLLQEAYALLKKMKE 493
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 137/321 (42%), Gaps = 38/321 (11%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHM-KNTPDCQPDVNTYSIL 69
A +L M+++ + N +F AL+ A+ + G F +A L + M K + D PD+ TY+ L
Sbjct: 239 ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSID--PDIFTYNSL 296
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
I DK + + M ++ P+ TYNTLI + ++K + +M
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 356
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
D T ++ + G D +K +++ S G+ P I T++ILLD G EK
Sbjct: 357 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 416
Query: 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249
V +YMQK I Y +I+ +AG + LF + + +KP+ VT
Sbjct: 417 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT--------- 467
Query: 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309
+N ++ + E +L+ M++ G PD
Sbjct: 468 --------------------------YNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSG 501
Query: 310 TYRTMVRAYSTNGMKNHAKEF 330
TY T++RA+ +G K + E
Sbjct: 502 TYNTLIRAHLRDGDKAASAEL 522
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 136/308 (44%), Gaps = 2/308 (0%)
Query: 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM 89
F LLSA + FD SL E M+ ++ TY+ILI + ALL M
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLG-ISHNLYTYNILINCFCRRSQISLALALLGKM 71
Query: 90 STQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQI 149
G P+ VT ++L++ Y K ++ + +M+ PD T + +
Sbjct: 72 MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 131
Query: 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV 209
++ G QP++ T+ ++++ K G + ++ M+ +V +N +
Sbjct: 132 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 191
Query: 210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269
ID+ + + LF+ M ++ I+P+ VT SL+ G+ +L + I
Sbjct: 192 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 251
Query: 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE 329
+ V FN L+DA+ + F E + + + M +R PD TY +++ + + + AK+
Sbjct: 252 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ 311
Query: 330 -FQDLVEK 336
F+ +V K
Sbjct: 312 MFEFMVSK 319
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 118/260 (45%), Gaps = 4/260 (1%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
GK + EK H+ M+ D + ++ +L++ + DKA + E M + DC PD
Sbjct: 269 GKFVEAEKLHD---DMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMV-SKDCFPD 324
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
++TY+ LIK K+ + L +MS +G+ +TVTY TLI +
Sbjct: 325 LDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 384
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
+M+S+ PD+ T + L N+G+++ + ++ Q + I+ I + +++ KAG
Sbjct: 385 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 444
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
+ + + +VTYN +I L++ L + M+ + P T
Sbjct: 445 KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYN 504
Query: 243 SLVRAYGHAGKPEKLGSVLR 262
+L+RA+ G ++R
Sbjct: 505 TLIRAHLRDGDKAASAELIR 524
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 156/340 (45%), Gaps = 8/340 (2%)
Query: 3 GKCKQPEK--AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK+ + A L M +A+ F ++ + + D A +L + M+ T +
Sbjct: 234 GLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME-TKGIR 292
Query: 61 PDVNTYSILIKSCLKAFA-FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
P+V TYS LI SCL ++ + LLSDM + I PN VT+N LIDA+ + F E E
Sbjct: 293 PNVVTYSSLI-SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 351
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
M+ +PD++T N + F ++D ++ +E S P + T+N L+ +
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC 411
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K+ E + + M VTY +I GD + +F+ M S+ + P +
Sbjct: 412 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 471
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T L+ + GK EK V ++ S+I LD + +++ + + + +
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339
+G KP+ VTY TM+ + K +E L++KM E
Sbjct: 532 SLKGVKPNVVTYNTMISGLCS---KRLLQEAYALLKKMKE 568
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 147/329 (44%), Gaps = 1/329 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
L K + + A LF+ M +G N ++++L+S G + A LL M P
Sbjct: 270 LCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK-INP 328
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
++ T++ LI + +K F + + L DM + I P+ TYN+L++ + + +
Sbjct: 329 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMF 388
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
M+S+DC PDV T N ++ F S +++ + + + G+ T+ L+
Sbjct: 389 EFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHD 448
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
G + V + M I+TY+I++D G L++ +F M+ IK
Sbjct: 449 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 508
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
+++ AGK + + + + + V +N ++ + E +L+ M++
Sbjct: 509 TTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKE 568
Query: 302 RGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
G P+ TY T++RA+ +G K + E
Sbjct: 569 DGPLPNSGTYNTLIRAHLRDGDKAASAEL 597
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 143/329 (43%), Gaps = 2/329 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+ A LF MV + F LLSA + FD SL E M+ + + TY+I
Sbjct: 67 DDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRL-EIVHGLYTYNI 125
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LI + ALL M G P+ VT ++L++ Y K ++ + +M+
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
PD T + + ++ G QP++ T+ ++++ K G +
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
++ M+ +V +N +ID+ + + LF+ M ++ I+P+ VT SL+
Sbjct: 246 NLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 305
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
G+ +L + I + V FN L+DA+ + F E + + + M +R PD
Sbjct: 306 CSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDI 365
Query: 309 VTYRTMVRAYSTNGMKNHAKE-FQDLVEK 336
TY ++V + + + AK+ F+ +V K
Sbjct: 366 FTYNSLVNGFCMHDRLDKAKQMFEFMVSK 394
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 123/288 (42%), Gaps = 38/288 (13%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHM-KNTPDCQPDVNTYSIL 69
A +L M+++ + N +F AL+ A+ + G F +A L + M K + D PD+ TY+ L
Sbjct: 314 ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID--PDIFTYNSL 371
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
+ DK + + M ++ P+ VTYNTLI + ++K + +M
Sbjct: 372 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL 431
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
D T ++ + G D +K +++ S G+ P I T++ILLD G EK
Sbjct: 432 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 491
Query: 190 VMEYMQK-------YHYS---------------W-------------TIVTYNIVIDAFG 214
V +YMQK Y Y+ W +VTYN +I
Sbjct: 492 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 551
Query: 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR 262
L++ L + M+ + P+ T +L+RA+ G ++R
Sbjct: 552 SKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIR 599
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 119/282 (42%), Gaps = 37/282 (13%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A +L+ M+ D + ++ +L++ + DKA + E M + DC PDV TY+ L
Sbjct: 348 EAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMV-SKDCFPDVVTYNTL 406
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
IK K+ + L +MS +G+ +TVTY TLI + +M+S+
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--------------------------- 162
PD+ T + L N+G+++ + ++ Q +
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWD 526
Query: 163 --------GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214
G++P++ T+N ++ ++ A+++ M++ TYN +I A
Sbjct: 527 LFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHL 586
Query: 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK 256
R GD L R MRS R T+ LV H G+ +K
Sbjct: 587 RDGDKAASAELIREMRSCRFVGDASTI-GLVANMLHDGRLDK 627
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 111/272 (40%), Gaps = 1/272 (0%)
Query: 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125
Y ++++ L D L M P+ V +N L+ A + K F + KM
Sbjct: 53 YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 112
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185
+ ++T N + F QI K G +PSI T + LL+ Y
Sbjct: 113 RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172
Query: 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245
A+++ M + Y +T+ +I + L M +P+ VT +V
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 232
Query: 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305
G + ++L ++ + I D V FN ++D+ + + + + + M+ +G +
Sbjct: 233 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 292
Query: 306 PDKVTYRTMVRAYSTNGMKNHAKE-FQDLVEK 336
P+ VTY +++ + G + A + D++EK
Sbjct: 293 PNVVTYSSLISCLCSYGRWSDASQLLSDMIEK 324
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 161/337 (47%), Gaps = 7/337 (2%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
GK Q ++A E F+ M++EG T +F ++ YG +G + SL++ MK C PD
Sbjct: 309 GKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMK--LHCAPD 366
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
TY+ILI K ++ A +M G++P+ V+Y TL+ A+ M E E +
Sbjct: 367 TRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIA 426
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
+M ++ E D +T + R + + ++ +++F AG S ++ +D+YG+ G
Sbjct: 427 EMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSS-EGYSANIDAYGERG 485
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
+ + V Q+ + T++ YN++I A+G + ++ LF M S + P T
Sbjct: 486 YLSEAERVFICCQEVNKR-TVIEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYN 544
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
+LV+ A P K L + + + D + + ++ ++ +L + V + M +
Sbjct: 545 TLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEY 604
Query: 303 GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339
+PD V Y ++ A++ G A + VE M E
Sbjct: 605 NIEPDVVVYGVLINAFADTGNVQQAMSY---VEAMKE 638
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 129/282 (45%), Gaps = 7/282 (2%)
Query: 43 FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN 102
+++A + E K+ + +V Y+I+++ KA + VQ+L +M +GI+P TY
Sbjct: 167 WERAVEIFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYG 226
Query: 103 TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ-- 160
TLID Y + + L KM +PD T L+ + + + E+ ++K+
Sbjct: 227 TLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCD 286
Query: 161 ----SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216
+ + S T+N ++D+YGK+G ++ S + M + T VT+N +I +G
Sbjct: 287 ENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNN 346
Query: 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFF 276
G L ++ L + M+ P T L+ + E+ G+ + + + + D V +
Sbjct: 347 GQLGEVTSLMKTMKL-HCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSY 405
Query: 277 NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318
L+ A+ E +G++ M + D+ T + R Y
Sbjct: 406 RTLLYAFSIRHMVEEAEGLIAEMDDDNVEIDEYTQSALTRMY 447
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 111/248 (44%), Gaps = 7/248 (2%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+L P K + M + G ++ + A++S++ + G + A + + M + +
Sbjct: 549 ILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEY-NIE 607
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV Y +LI + + + + M GI N+V YN+LI Y + E E
Sbjct: 608 PDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAI 667
Query: 121 LVKMLSEDCE----PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD 176
K+L + C PDV+T NC + + + E ++ + G + + TF ++L
Sbjct: 668 YRKLL-QSCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRG-EANEFTFAMMLC 725
Query: 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 236
Y K G FE+ + + + M++ ++YN V+ F G K+ F+ M S I+P
Sbjct: 726 MYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQP 785
Query: 237 SCVTLCSL 244
T SL
Sbjct: 786 DDSTFKSL 793
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 139/334 (41%), Gaps = 46/334 (13%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT--- 65
EK+ F+ G + +++ ++A + AYG G +A + C +VN
Sbjct: 454 EKSWSWFKRFHVAG-NMSSEGYSANIDAYGERGYLSEAERVF-------ICCQEVNKRTV 505
Query: 66 --YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123
Y+++IK+ + + +K L M + G+ P+ TYNTL+ A M + L K
Sbjct: 506 IEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEK 565
Query: 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
M D + +F GQ++ E+ Y++ I+P + + +L++++ G+
Sbjct: 566 MRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGN 625
Query: 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
++ + +E M++ V YN +I + + G L + E ++R ++ SC
Sbjct: 626 VQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYR-----KLLQSC----- 675
Query: 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
N D NC+++ Y + + + + M+QRG
Sbjct: 676 ----------------------NKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRG 713
Query: 304 CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337
+ ++ T+ M+ Y NG A + + +M
Sbjct: 714 -EANEFTFAMMLCMYKKNGRFEEATQIAKQMREM 746
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 129/302 (42%), Gaps = 7/302 (2%)
Query: 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM 89
+ ++ AYG S +KA L E M + PD TY+ L++ A K + L M
Sbjct: 508 YNVMIKAYGISKSCEKACELFESMMSY-GVTPDKCTYNTLVQILASADMPHKGRCYLEKM 566
Query: 90 STQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQI 149
G + + Y +I ++ + E +M+ + EPDV + AF ++G +
Sbjct: 567 RETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNV 626
Query: 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV----MEYMQKYHYSWTIVT 205
E + AGI + +N L+ Y K G+ ++ A+ ++ K Y + T
Sbjct: 627 QQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYP-DVYT 685
Query: 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265
N +I+ + +++ E +F M+ +R + + T ++ Y G+ E+ + + +
Sbjct: 686 SNCMINLYSERSMVRKAEAIFDSMK-QRGEANEFTFAMMLCMYKKNGRFEEATQIAKQMR 744
Query: 266 NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKN 325
I+ D + +N ++ + F E + M G +PD T++++ GM
Sbjct: 745 EMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGMSK 804
Query: 326 HA 327
A
Sbjct: 805 KA 806
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 30/198 (15%)
Query: 126 SEDC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184
S+ C E +V N LR G + + ++ +++ GI+P +T+ L+D Y K G
Sbjct: 179 SKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYSKGGLK 238
Query: 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSL 244
+ M K VT IV+ + +A + ++ E F+ + K
Sbjct: 239 VHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDENKA-------- 290
Query: 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC 304
+S + L + +N ++D YG+ E + M + G
Sbjct: 291 ---------------------DSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGI 329
Query: 305 KPDKVTYRTMVRAYSTNG 322
P VT+ TM+ Y NG
Sbjct: 330 VPTTVTFNTMIHIYGNNG 347
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 3/190 (1%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ--PDVNTY 66
++A +AM + G N+ + +L+ Y + G D+A ++ + + + PDV T
Sbjct: 627 QQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTS 686
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS 126
+ +I + K +A+ M +G N T+ ++ Y + F E +M
Sbjct: 687 NCMINLYSERSMVRKAEAIFDSMKQRG-EANEFTFAMMLCMYKKNGRFEEATQIAKQMRE 745
Query: 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
D + N L F G+ + +++ S+GIQP +TF L K G +K
Sbjct: 746 MKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGMSKK 805
Query: 187 MSAVMEYMQK 196
+E ++K
Sbjct: 806 AVRKIEEIRK 815
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 14/165 (8%)
Query: 183 HFEKMSAVMEYMQ-KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
H+E+ + E+ + K Y ++ YNI++ G+A + ++ L+ M + IKP T
Sbjct: 166 HWERAVEIFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTY 225
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
+L+ Y G L + + D V ++ Y + + F + + E ++
Sbjct: 226 GTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAE---EFFKK 282
Query: 302 RGCKPDKV---------TYRTMVRAYSTNGMKNHAKE-FQDLVEK 336
C +K TY TM+ Y +G A E F+ ++E+
Sbjct: 283 WSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEE 327
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 154/339 (45%), Gaps = 7/339 (2%)
Query: 1 MLGKC--KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPD 58
++G C K + A ++F M +GC N ++T L+ + D+A L MK+ +
Sbjct: 260 IMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDD-E 318
Query: 59 CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME 118
C P V TY++LIKS + + L+ +M GI+PN TY LID+ F +
Sbjct: 319 CFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAR 378
Query: 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178
L +ML + P+V T N + + G I+ E +S + P+ T+N L+ Y
Sbjct: 379 ELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGY 438
Query: 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238
K+ + K V+ M + +VTYN +ID R+G+ L LM + P
Sbjct: 439 CKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQ 497
Query: 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298
T S++ + + + E+ + ++ + + V + L+D Y + E +LE
Sbjct: 498 WTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557
Query: 299 MQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337
M + C P+ +T+ ++ +G KE L EKM
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCADG---KLKEATLLEEKM 593
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 5/332 (1%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
EKA EL M+++G N ++ AL++ Y + G+ + A ++E M++ P+ TY+
Sbjct: 375 EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESR-KLSPNTRTYNE 433
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LIK K+ K +L+ M + + P+ VTYN+LID R+ F L M
Sbjct: 434 LIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG 492
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
PD WT + + S +++ ++ + G+ P++ + L+D Y KAG ++
Sbjct: 493 LVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAH 552
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
++E M + +T+N +I G LK+ L M ++P+ T L+
Sbjct: 553 LMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRL 612
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
G + S + + +S D + + Y R + + ++ M++ G PD
Sbjct: 613 LKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDL 672
Query: 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340
TY ++++ Y G N A D++++M +T
Sbjct: 673 FTYSSLIKGYGDLGQTNFA---FDVLKRMRDT 701
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 150/324 (46%), Gaps = 2/324 (0%)
Query: 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS 72
+++ M+++ N ++ +++ Y + G ++A + + PD TY+ LI
Sbjct: 204 QVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEA-GLDPDFFTYTSLIMG 262
Query: 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD 132
+ D + ++M +G R N V Y LI A+ E VKM ++C P
Sbjct: 263 YCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT 322
Query: 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVME 192
V T +++ S + ++ + GI+P+I+T+ +L+DS FEK ++
Sbjct: 323 VRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLG 382
Query: 193 YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG 252
M + ++TYN +I+ + + G ++ + LM S ++ P+ T L++ Y +
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN 442
Query: 253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR 312
+ +G + + ++ ++ D V +N L+D R F +L +M RG PD+ TY
Sbjct: 443 VHKAMGVLNKMLERK-VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYT 501
Query: 313 TMVRAYSTNGMKNHAKEFQDLVEK 336
+M+ + + A + D +E+
Sbjct: 502 SMIDSLCKSKRVEEACDLFDSLEQ 525
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 152/371 (40%), Gaps = 57/371 (15%)
Query: 3 GKCK--QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK + ++AH + + M+ + C N+ +F AL+ G +A +LLE Q
Sbjct: 541 GYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA-TLLEEKMVKIGLQ 599
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P V+T +ILI LK FD + M + G +P+ TY T I Y R + E
Sbjct: 600 PTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDM 659
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF-----NILL 175
+ KM PD++T + ++ +G+ GQ + ++ + G +PS +TF ++L
Sbjct: 660 MAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLE 719
Query: 176 DSYGKAG-------------HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222
YGK F+ + ++E M ++ + +Y +I G+L+
Sbjct: 720 MKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVA 779
Query: 223 EYLF-RLMRSERIKPS------CVTLCSLVRAYGHA------------------------ 251
E +F + R+E I PS ++ C ++ + A
Sbjct: 780 EKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLIC 839
Query: 252 -----GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
G+ E+ SV + + D + + ++D G+ + VM++ GCK
Sbjct: 840 GLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKF 899
Query: 307 DKVTYRTMVRA 317
TY ++
Sbjct: 900 SSQTYSLLIEG 910
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 104/235 (44%)
Query: 101 YNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160
YNTL+++ R + EM+ ++ML + P+++T N + + G ++ + K
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 161 SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLK 220
AG+ P T+ L+ Y + + V M V Y +I A +
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 221 QMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLV 280
+ LF M+ + P+ T L+++ + + + ++++ ++ + I + + L+
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 281 DAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335
D+ F + + +L M ++G P+ +TY ++ Y GM A + +L+E
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELME 420
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/274 (18%), Positives = 115/274 (41%)
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
+ Y+ L+ S + D+++ + +M + PN TYN +++ Y + E +
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVS 242
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
K++ +PD +T + + +D+ K + + G + + + L+ A
Sbjct: 243 KIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVAR 302
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
++ + M+ T+ TY ++I + + + L + M IKP+ T
Sbjct: 303 RIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYT 362
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
L+ + K EK +L + +M + + +N L++ Y + + V+E+M+ R
Sbjct: 363 VLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESR 422
Query: 303 GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
P+ TY +++ Y + + ++E+
Sbjct: 423 KLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLER 456
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 6/174 (3%)
Query: 176 DSYGKAGHFEKMSAVMEYMQKYH--YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233
DS G A + + M +++ Y I YN ++++ R G + +M+ ++ M ++
Sbjct: 154 DSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDK 213
Query: 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMK 293
+ P+ T +V Y G E+ + I + + D + L+ Y + K
Sbjct: 214 VCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAF 273
Query: 294 GVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM-DETCLAMKR 346
V M +GC+ ++V Y ++ + E DL KM D+ C R
Sbjct: 274 KVFNEMPLKGCRRNEVAYTHLIHGLC---VARRIDEAMDLFVKMKDDECFPTVR 324
>sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825,
chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2
SV=2
Length = 904
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 149/312 (47%), Gaps = 1/312 (0%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A +L+ + G + F+ ++ Y ++G ++A S+LE M D PDV + +
Sbjct: 576 EAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDM 635
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
++ K DK+Q L + GI N YN +I+ RA E+ T +M+
Sbjct: 636 LRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGF 695
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
P+ T N L +G + + + + + G+ I ++N ++ +YGK + MS+
Sbjct: 696 TPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVI-SYNTIIAAYGKNKDYTNMSS 754
Query: 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249
++ MQ +S ++ YN ++DA+G+ +++ + + M+ P T ++ YG
Sbjct: 755 AIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYG 814
Query: 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309
G +++ VL+ + S + D +N L+ AYG E G+++ M+ R PDKV
Sbjct: 815 EQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDKV 874
Query: 310 TYRTMVRAYSTN 321
TY +V A N
Sbjct: 875 TYTNLVTALRRN 886
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 104/239 (43%), Gaps = 10/239 (4%)
Query: 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLS--EDCEPDVWTMNCTLRAFGNSGQIDTMEK 154
N V Y+ ++ GR + + E L+K L + + N + A G + K
Sbjct: 173 NFVAYSLILRVLGRREEWDRAE-DLIKELCGFHEFQKSYQVFNTVIYACTKKGNVKLASK 231
Query: 155 CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV---TYNIVID 211
+ G++P++ T +L+ Y K + E+ +M+K+ IV Y+ +I
Sbjct: 232 WFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKF----GIVCESAYSSMIT 287
Query: 212 AFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML 271
+ R + E + LM+ +R++ ++ AY GK E S+L ++ +
Sbjct: 288 IYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSP 347
Query: 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
+ + +N L+ YG++ +G+ + G +PD+ +YR+M+ + AK +
Sbjct: 348 NIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHY 406
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/338 (20%), Positives = 144/338 (42%), Gaps = 19/338 (5%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+KA E+ M + +++ +L+AY + G + A S+L M+ P++ Y+
Sbjct: 296 DKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSME-AAGFSPNIIAYNT 354
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LI K F + Q L + G+ P+ +Y ++I+ +GRA + E + ++
Sbjct: 355 LITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCG 414
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
+P+ + + + G D K E G Q S + I+L +Y K G + +
Sbjct: 415 YKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGIGCQYS-SILGIILQAYEKVGKIDVVP 473
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC-------VTL 241
V++ H +++ ++ A+ + G ++ L+R ++ + S + +
Sbjct: 474 CVLKGSFHNHIRLNQTSFSSLVMAYVKHG---MVDDCLGLLREKKWRDSAFESHLYHLLI 530
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
CS +G+ + SD ++ + ++D Y + F+E + + ++
Sbjct: 531 CSC----KESGQLTDAVKIYNHKMESDEEINLHITSTMIDIYTVMGEFSEAEKLYLNLKS 586
Query: 302 RGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339
G D++ + +VR Y G +E ++E MDE
Sbjct: 587 SGVVLDRIGFSIVVRMYVKAG---SLEEACSVLEIMDE 621
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/334 (17%), Positives = 131/334 (39%), Gaps = 37/334 (11%)
Query: 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84
N +++ +L GR +D+A L++ + + Q ++ +I +C K
Sbjct: 172 GNFVAYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNVKLASK 231
Query: 85 LLSDMSTQGIRPNTVT----------------------------------YNTLIDAYGR 110
M G+RPN T Y+++I Y R
Sbjct: 232 WFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCESAYSSMITIYTR 291
Query: 111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT 170
+++ + E + M + + L A+ G+++ E ++AG P+I
Sbjct: 292 LRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSPNIIA 351
Query: 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230
+N L+ YGK E + + +Y +I+ +GRA + ++ ++ ++ ++
Sbjct: 352 YNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELK 411
Query: 231 SERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD-TVFFNCLVDAYGRLKCF 289
KP+ L +L+ G ++ G++ D + I + ++ AY ++
Sbjct: 412 RCGYKPNSFNLFTLINLQAKYG--DRDGAIKTIEDMTGIGCQYSSILGIILQAYEKVGKI 469
Query: 290 AEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323
+ VL+ + ++ ++ ++V AY +GM
Sbjct: 470 DVVPCVLKGSFHNHIRLNQTSFSSLVMAYVKHGM 503
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/306 (18%), Positives = 130/306 (42%), Gaps = 5/306 (1%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKN-TPDCQPDVNTYSIL 69
A + F M++ G N + L+ Y ++ ++A HM+ C+ + YS +
Sbjct: 229 ASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCE---SAYSSM 285
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
I + +DK + ++ M +R + +++AY + E LV M +
Sbjct: 286 ITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGF 345
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
P++ N + +G +++ + + + + G++P ++ +++ +G+A ++E+
Sbjct: 346 SPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKH 405
Query: 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249
+ +++ Y +I+ + GD M + S + L +++AY
Sbjct: 406 YYQELKRCGYKPNSFNLFTLINLQAKYGDRDGAIKTIEDMTGIGCQYSSI-LGIILQAYE 464
Query: 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309
GK + + VL+ ++ I L+ F+ LV AY + + G+L + R +
Sbjct: 465 KVGKIDVVPCVLKGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCLGLLREKKWRDSAFESH 524
Query: 310 TYRTMV 315
Y ++
Sbjct: 525 LYHLLI 530
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/384 (18%), Positives = 152/384 (39%), Gaps = 56/384 (14%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
GK + E A LF + + G + + S+ +++ +GR+ +++A + +K C
Sbjct: 360 GKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKR---CGYK 416
Query: 63 VNTYSILIKSCLKAFAFDKVQAL--LSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
N++++ L+A D+ A+ + DM+ G + +++ ++ AY + +
Sbjct: 417 PNSFNLFTLINLQAKYGDRDGAIKTIEDMTGIGCQYSSIL-GIILQAYEKVGKIDVVPCV 475
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY--EKFQSAGIQPSINTFNILLDSY 178
L + + + + A+ G +D +K++ + + + +++L+ S
Sbjct: 476 LKGSFHNHIRLNQTSFSSLVMAYVKHGMVDDCLGLLREKKWRDSAFESHL--YHLLICSC 533
Query: 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238
++G + + + + + +ID + G+ + E L+ ++S +
Sbjct: 534 KESGQLTDAVKIYNHKMESDEEINLHITSTMIDIYTVMGEFSEAEKLYLNLKSSGVVLDR 593
Query: 239 VTLCSLVRAYGHAGKPEKLGSVLRFID-NSDIMLDTVFF--------------------- 276
+ +VR Y AG E+ SVL +D DI+ D F
Sbjct: 594 IGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYY 653
Query: 277 --------------NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322
NC+++ R E+ G E M + G P+ VT+ ++ Y
Sbjct: 654 RIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGFTPNTVTFNVLLDVYGK-- 711
Query: 323 MKNHAKEFQDLVEKMDETCLAMKR 346
AK F+ K++E L KR
Sbjct: 712 ----AKLFK----KVNELFLLAKR 727
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 144/323 (44%), Gaps = 5/323 (1%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
L K E A + + M D G + +F+ L Y + +KA + L + D
Sbjct: 294 LFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSN---EKAEAALGVYETAVDSGV 350
Query: 62 DVNTY--SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
+N Y SIL+ + K +K + +L +G+ PN V YNT+ID Y R +
Sbjct: 351 KMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARM 410
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
+ M + +PD NC +R F G+++ EK K + G+ PS+ T+NIL+ YG
Sbjct: 411 KIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYG 470
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
+ F+K +++ M+ +V+Y +I+ + L + + + R M + P
Sbjct: 471 RKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVR 530
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
L+ GK E + + I L+ V +N L+D +E + +L +
Sbjct: 531 IYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEI 590
Query: 300 QQRGCKPDKVTYRTMVRAYSTNG 322
++G KPD TY +++ Y G
Sbjct: 591 SRKGLKPDVFTYNSLISGYGFAG 613
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 139/336 (41%), Gaps = 10/336 (2%)
Query: 5 CKQP--EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
CK+ EKA E+ + +G N + ++ Y R G A +E M+ +PD
Sbjct: 365 CKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQ-GMKPD 423
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
Y+ LI+ + + + ++ M +G+ P+ TYN LI YGR F + L
Sbjct: 424 HLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILK 483
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
+M P+V + + ++ + + G+ P + +N+L+D G
Sbjct: 484 EMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKG 543
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
E + M K +VTYN +ID G L + E L + + +KP T
Sbjct: 544 KIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYN 603
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE-VMQQ 301
SL+ YG AG ++ ++ + S I ++ L+ C E + E + +
Sbjct: 604 SLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISL-----CTKEGIELTERLFGE 658
Query: 302 RGCKPDKVTYRTMVRAYSTNGMKNHAKEFQ-DLVEK 336
KPD + Y ++ Y+ +G A Q ++EK
Sbjct: 659 MSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEK 694
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 146/389 (37%), Gaps = 79/389 (20%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLS------------------------- 35
+L + K +A +LF A+ +EG ++ S T LL
Sbjct: 118 LLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRP 177
Query: 36 ---AYGRS-----GLFD--KAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQAL 85
YG++ L D K L MK+ P V Y++LI K + + L
Sbjct: 178 SKFMYGKAIQAAVKLSDVGKGLELFNRMKHD-RIYPSVFIYNVLIDGLCKGKRMNDAEQL 236
Query: 86 LSDMSTQGIRPNTVTYNTLIDAYGRA----KMFAEMELTLVKMLSEDCEPDVWTMNCTLR 141
+M + + P+ +TYNTLID Y +A K F E +M ++ EP + T N L+
Sbjct: 237 FDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRE----RMKADHIEPSLITFNTLLK 292
Query: 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG---------------------- 179
+G ++ E ++ + G P TF+IL D Y
Sbjct: 293 GLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKM 352
Query: 180 -------------KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF 226
K G EK ++ V YN +ID + R GDL
Sbjct: 353 NAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKI 412
Query: 227 RLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL 286
M + +KP + L+R + G+ E + + + +N L+ YGR
Sbjct: 413 EAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRK 472
Query: 287 KCFAEMKGVLEVMQQRGCKPDKVTYRTMV 315
F + +L+ M+ G P+ V+Y T++
Sbjct: 473 YEFDKCFDILKEMEDNGTMPNVVSYGTLI 501
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 139/330 (42%), Gaps = 40/330 (12%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E A + M +G + +++ L+ YGR FDK F +L+ M++ P+V +Y
Sbjct: 441 ENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDN-GTMPNVVSYGT 499
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRP-------------------------------- 96
LI K + Q + DM +G+ P
Sbjct: 500 LINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKG 559
Query: 97 ---NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME 153
N VTYNTLID +E E L+++ + +PDV+T N + +G +G +
Sbjct: 560 IELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCI 619
Query: 154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAF 213
YE+ + +GI+P++ T+++L+ K G + + ++ YN V+ +
Sbjct: 620 ALYEEMKRSGIKPTLKTYHLLISLCTKEG----IELTERLFGEMSLKPDLLVYNGVLHCY 675
Query: 214 GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT 273
GD+++ L + M + I T SL+ GK ++ S++ ++ ++ +
Sbjct: 676 AVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEA 735
Query: 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
+N +V + +K + MQ++G
Sbjct: 736 DTYNIIVKGHCEVKDYMSAYVWYREMQEKG 765
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 123/287 (42%), Gaps = 10/287 (3%)
Query: 46 AFSLLEHMKNTPDCQPDVNTYSILIKSCL--KAFAFDKVQALLSDMSTQGIRPNTVTYNT 103
AFSL ++P + D +S L+ S L ++ + L + +GI P++ +
Sbjct: 98 AFSL-----SSPSLKHD---FSYLLLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTL 149
Query: 104 LIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163
L+D + K F + +L D P + ++A + + + + +
Sbjct: 150 LLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDR 209
Query: 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQME 223
I PS+ +N+L+D K + + M +++TYN +ID + +AG+ ++
Sbjct: 210 IYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSF 269
Query: 224 YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283
+ M+++ I+PS +T +L++ AG E +VL+ + + + D F+ L D Y
Sbjct: 270 KVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGY 329
Query: 284 GRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
+ GV E G K + T ++ A G A+E
Sbjct: 330 SSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEI 376
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
M GK + A +L + +G + ++ +L+S YG +G + +L E MK + +
Sbjct: 576 MTGKLSE---AEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRS-GIK 631
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P + TY +LI C K + + L +MS ++P+ + YN ++ Y + +ME
Sbjct: 632 PTLKTYHLLISLCTKE-GIELTERLFGEMS---LKPDLLVYNGVLHCYA---VHGDMEKA 684
Query: 121 L---VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177
+M+ + D T N + G++ + ++ + ++P +T+NI++
Sbjct: 685 FNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIV-- 742
Query: 178 YGKAGHFEKMSAVMEYMQKYHY 199
GH E V +YM Y +
Sbjct: 743 ---KGHCE----VKDYMSAYVW 757
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 149/335 (44%), Gaps = 7/335 (2%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLF--DKAFSLLEHMKNTPDCQPDVNTYS 67
KA EL AM GC + SF L++A +SG + A LL+ ++N+ +PD TY+
Sbjct: 243 KAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNS-GLRPDAITYN 301
Query: 68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127
L+ +C + D + DM +P+ TYN +I YGR + AE E +++ +
Sbjct: 302 TLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELK 361
Query: 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKM 187
PD T N L AF + +++ Y++ Q G T+N ++ YGK G +
Sbjct: 362 GFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421
Query: 188 SAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
+ + M+ + +TY ++ID+ G+A + L M IKP+ T +L+
Sbjct: 422 LQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALIC 481
Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
Y AGK E+ + S D + ++ ++D R + G+ M G P
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTP 541
Query: 307 DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341
Y M+ +N + + Q + M+E C
Sbjct: 542 SYTLYELMILGLMK---ENRSDDIQKTIRDMEELC 573
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 155/356 (43%), Gaps = 44/356 (12%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
+C E+A +F M+ +G +S LL A G ++ + ++E ++ D
Sbjct: 798 AQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQ---DMGFK 854
Query: 63 VNTYSILIKSCLKAFA----FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME 118
++ SIL+ L AFA +V+ + S M G P Y +I+ + K + E
Sbjct: 855 ISKSSILL--MLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
Query: 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178
+ + +M + + ++ N L+ + + Y++ + G++P T+N L+ Y
Sbjct: 913 IMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY 972
Query: 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF------------ 226
+ E+ +M+ M+ + TY +I AFG+ L+Q E LF
Sbjct: 973 CRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDR 1032
Query: 227 -----------------------RLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRF 263
++M++ I+P+ T+ L+ +Y +G P++ VL
Sbjct: 1033 SFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSN 1092
Query: 264 IDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319
+ ++++ L T+ ++ ++DAY R K + L M++ G +PD + VRA S
Sbjct: 1093 LKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAAS 1148
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/354 (21%), Positives = 143/354 (40%), Gaps = 57/354 (16%)
Query: 9 EKAHELFQAM-VDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS 67
++A E+F+ + + N + A+L GR A + + P V Y+
Sbjct: 172 QRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIF--TRAEPTVGDRVQVYN 229
Query: 68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY------------------- 108
++ ++ F K Q L+ M +G P+ +++NTLI+A
Sbjct: 230 AMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVR 289
Query: 109 -------------------------GRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF 143
G K+F +ME + C+PD+WT N + +
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDME-------AHRCQPDLWTYNAMISVY 342
Query: 144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI 203
G G E+ + + + G P T+N LL ++ + + EK+ V + MQK +
Sbjct: 343 GRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDE 402
Query: 204 VTYNIVIDAFGRAGDLKQMEYLFRLMR--SERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261
+TYN +I +G+ G L L++ M+ S R P +T L+ + G A + + +++
Sbjct: 403 MTYNTIIHMYGKQGQLDLALQLYKDMKGLSGR-NPDAITYTVLIDSLGKANRTVEAAALM 461
Query: 262 RFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV 315
+ + I ++ L+ Y + E + M + G KPD + Y M+
Sbjct: 462 SEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVML 515
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/331 (19%), Positives = 150/331 (45%), Gaps = 7/331 (2%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP---DCQPDVNTY 66
+A ++F + GC+A+ +++ Y + G + A ++ + C P Y
Sbjct: 699 EASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSP---MY 755
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS 126
+ +I++ K + K ++++ ++ G P+ T+N+L+ AY + + M+
Sbjct: 756 TDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMR 815
Query: 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
+ P V ++N L A G+++ + E+ Q G + S ++ ++LD++ +AG+ +
Sbjct: 816 DGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFE 875
Query: 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
+ + M+ Y TI Y ++I+ + ++ E + M K S+++
Sbjct: 876 VKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLK 935
Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
Y +K V + I + + D +N L+ Y R + E +++ M+ G P
Sbjct: 936 MYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDP 995
Query: 307 DKVTYRTMVRAYSTNGMKNHAKE-FQDLVEK 336
TY++++ A+ A++ F++L+ K
Sbjct: 996 KLDTYKSLISAFGKQKCLEQAEQLFEELLSK 1026
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 3/248 (1%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+L K K+ A + M + + ++L Y + K + + +K T +
Sbjct: 901 LLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKET-GLE 959
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PD TY+ LI + ++ L+ M G+ P TY +LI A+G+ K + E
Sbjct: 960 PDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQL 1019
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
++LS+ + D + ++ +SG EK + ++AGI+P++ T ++L+ SY
Sbjct: 1020 FEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSS 1079
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ-MEYLFRLMRSERIKPSCV 239
+G+ ++ V+ ++ T + Y+ VIDA+ R+ D +E L M+ E ++P
Sbjct: 1080 SGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLE-MKKEGLEPDHR 1138
Query: 240 TLCSLVRA 247
VRA
Sbjct: 1139 IWTCFVRA 1146
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 74/170 (43%)
Query: 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT 65
+ EK E++Q M G + ++ ++ YG+ G D A L + MK PD T
Sbjct: 381 RNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAIT 440
Query: 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125
Y++LI S KA + AL+S+M GI+P TY+ LI Y +A E E T ML
Sbjct: 441 YTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCML 500
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175
+PD + L + Y S G PS + +++
Sbjct: 501 RSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMI 550
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/307 (18%), Positives = 126/307 (41%), Gaps = 2/307 (0%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A + + G + + ++L +Y SG +AF LLE +K + T ++++
Sbjct: 593 AARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIV 652
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVT-YNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
C + +D G + T Y TL+ + +AE + C
Sbjct: 653 LHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGC 712
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT-FNILLDSYGKAGHFEKMS 188
E + + G +T + + ++ G + + + ++++YGK ++K
Sbjct: 713 EASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAE 772
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
+V+ +++ + + T+N ++ A+ + G ++ +F M + P+ ++ L+ A
Sbjct: 773 SVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHAL 832
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
G+ E+L V+ + + + ++DA+ R E+K + M+ G P
Sbjct: 833 CVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTI 892
Query: 309 VTYRTMV 315
YR M+
Sbjct: 893 RLYRMMI 899
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/366 (19%), Positives = 145/366 (39%), Gaps = 45/366 (12%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
LGK + +A L M+D G Q+++AL+ Y ++G ++A M + +P
Sbjct: 448 LGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRS-GTKP 506
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
D YS+++ L+ K L DM + G P+ Y +I + +++ T+
Sbjct: 507 DNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTI 566
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQ-IDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
M E C + ++ L G+ D + + + G + +T +L SY
Sbjct: 567 RDM-EELCGMNPLEISSVLV----KGECFDLAARQLKVAITNGYELENDTLLSILGSYSS 621
Query: 181 AGHFEKMSAVMEYMQKYHY-SWTIVTYNIV-----IDAFGRAGD---------------- 218
+G + ++E+++++ S ++T ++ ++ A D
Sbjct: 622 SGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSS 681
Query: 219 ---------------LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRF 263
+ +F +R + S S+V Y G PE V+
Sbjct: 682 TMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQ 741
Query: 264 IDNSDIMLD-TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322
+ + + +++AYG+ K + + + V+ ++Q G PD T+ +++ AY+ G
Sbjct: 742 AETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCG 801
Query: 323 MKNHAK 328
A+
Sbjct: 802 CYERAR 807
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG--MKNHAKEFQDL 333
+N ++ Y R F++ + +++ M+QRGC PD +++ T++ A +G N A E D+
Sbjct: 228 YNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDM 287
Query: 334 V 334
V
Sbjct: 288 V 288
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 158/355 (44%), Gaps = 19/355 (5%)
Query: 3 GKCKQPE--KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK+ + A EL + MV++G N S++ L++ SG + AFS L M C
Sbjct: 255 GLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKR-GCH 313
Query: 61 PDVNTYSILIKSC-LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
P++ T S L+K C L+ FD + + G++PN V YNTL+ + +
Sbjct: 314 PNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVS 373
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
M C P++ T + F G +D + K ++G P++ + ++++
Sbjct: 374 VFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALC 433
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-RIKPSC 238
+ F++ +++E M K + + ++ T+N I AG L E +FR M + R P+
Sbjct: 434 RHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNI 493
Query: 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGV--- 295
VT L+ A + E+ + R I + + +N L+ C A + G+
Sbjct: 494 VTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHG----SCNAGLPGIALQ 549
Query: 296 -LEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMK-RPD 348
+ M G PD++T ++ AY G A + DLV +C K RPD
Sbjct: 550 LVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLV-----SCGRRKWRPD 599
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 149/325 (45%), Gaps = 26/325 (8%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
L K + + A +L M ++GC + S+T ++S+ GL + L E +P
Sbjct: 191 LCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERF------EP 244
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT- 120
V+ Y+ LI K + L+ +M +GI PN ++Y+TLI+ + ++EL
Sbjct: 245 VVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNS---GQIELAF 301
Query: 121 --LVKMLSEDCEPDVWTMNCTLRA-FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177
L +ML C P+++T++ ++ F D ++ + + G+QP++ +N L+
Sbjct: 302 SFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQG 361
Query: 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237
+ G+ K +V +M++ S I TY +I+ F + G L Y++ M + P+
Sbjct: 362 FCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPN 421
Query: 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY---GRL----KCFA 290
V ++V A K ++ S++ + + FN + GRL K F
Sbjct: 422 VVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFR 481
Query: 291 EMKGVLEVMQQRGCKPDKVTYRTMV 315
+M+ QQ C P+ VTY ++
Sbjct: 482 QME------QQHRCPPNIVTYNELL 500
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 132/312 (42%), Gaps = 5/312 (1%)
Query: 11 AHELFQAMVDE-GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
A +L+ M+ G N ++ L+ + G KA S+ HM+ C P++ TY L
Sbjct: 335 ALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEI-GCSPNIRTYGSL 393
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
I K + D + + M T G PN V Y +++A R F E E + M E+C
Sbjct: 394 INGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENC 453
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKF-QSAGIQPSINTFNILLDSYGKAGHFEKMS 188
P V T N ++ ++G++D EK + + Q P+I T+N LLD KA E+
Sbjct: 454 APSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAY 513
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
+ + W+ TYN ++ AG L M + P +T+ ++ AY
Sbjct: 514 GLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAY 573
Query: 249 GHAGKPEKLGSVLRFID--NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
GK E+ +L + D + + ++ R C + +LE M G P
Sbjct: 574 CKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVP 633
Query: 307 DKVTYRTMVRAY 318
T+ ++ +
Sbjct: 634 SIATWSVLINCF 645
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 133/317 (41%), Gaps = 7/317 (2%)
Query: 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY 66
Q + L Q M +G + F +++S Y + GL ++A + +K C P V Y
Sbjct: 91 QVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEF-GCDPSVKIY 149
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS 126
+ ++ + L + + DM G PN TYN L+ A + + LV+M +
Sbjct: 150 NHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSN 209
Query: 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
+ C PD + + + G + + E+F +P ++ +N L++ K ++
Sbjct: 210 KGCCPDAVSYTTVISSMCEVGLVKEGRELAERF-----EPVVSVYNALINGLCKEHDYKG 264
Query: 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
+M M + S +++Y+ +I+ +G ++ M P+ TL SLV+
Sbjct: 265 AFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVK 324
Query: 247 AYGHAGKP-EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305
G + L + I + + V +N LV + + V M++ GC
Sbjct: 325 GCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCS 384
Query: 306 PDKVTYRTMVRAYSTNG 322
P+ TY +++ ++ G
Sbjct: 385 PNIRTYGSLINGFAKRG 401
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 146/346 (42%), Gaps = 18/346 (5%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E+A E+F + + GCD + + + +L + + MK +P+V TY++
Sbjct: 128 ERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRD-GFEPNVFTYNV 186
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
L+K+ K D + LL +MS +G P+ V+Y T+I + + E + L+E
Sbjct: 187 LLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEG-----RELAER 241
Query: 129 CEPDVWTMNCTLRAFGNS----GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184
EP V N + G + M + EK GI P++ +++ L++ +G
Sbjct: 242 FEPVVSVYNALINGLCKEHDYKGAFELMREMVEK----GISPNVISYSTLINVLCNSGQI 297
Query: 185 EKMSAVMEYMQKYHYSWTIVTYN-IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
E + + M K I T + +V F R ++ +++R ++P+ V +
Sbjct: 298 ELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNT 357
Query: 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
LV+ + G K SV ++ + + L++ + + + M G
Sbjct: 358 LVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSG 417
Query: 304 CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349
C P+ V Y MV A + + KE + L+E M + A P F
Sbjct: 418 CCPNVVVYTNMVEALCRH---SKFKEAESLIEIMSKENCAPSVPTF 460
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
++A L + M E C + +F A + +G D A + M+ C P++ TY+
Sbjct: 439 KEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNE 498
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV-KMLSE 127
L+ KA ++ L ++ +G+ ++ TYNTL+ A + + L LV KM+ +
Sbjct: 499 LLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGL-PGIALQLVGKMMVD 557
Query: 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG---IQPSINTFNILLDSYGKAGHF 184
PD TMN + A+ G+ + + + S G +P + ++ ++ ++
Sbjct: 558 GKSPDEITMNMIILAYCKQGKAERAAQMLD-LVSCGRRKWRPDVISYTNVIWGLCRSNCR 616
Query: 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAF 213
E ++E M +I T++++I+ F
Sbjct: 617 EDGVILLERMISAGIVPSIATWSVLINCF 645
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 7/254 (2%)
Query: 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKM 124
T+ ++I+ D VQ LL M QG + + ++I Y R AE + +
Sbjct: 78 TFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVY-RQVGLAERAVEMFYR 136
Query: 125 LSE-DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
+ E C+P V N L +I + Y + G +P++ T+N+LL + K
Sbjct: 137 IKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNK 196
Query: 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
+ ++ M V+Y VI + G +K+ L +ER +P +
Sbjct: 197 VDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGREL-----AERFEPVVSVYNA 251
Query: 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
L+ + ++R + I + + ++ L++ L M +RG
Sbjct: 252 LINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRG 311
Query: 304 CKPDKVTYRTMVRA 317
C P+ T ++V+
Sbjct: 312 CHPNIYTLSSLVKG 325
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/204 (19%), Positives = 82/204 (40%), Gaps = 38/204 (18%)
Query: 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194
T +R GQ+D+++ ++ + G S + F ++ Y + G E+ + +
Sbjct: 78 TFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRI 137
Query: 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254
+++ ++ YN V+D ++ + ++R M+ + +P+ T L++A K
Sbjct: 138 KEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNK- 196
Query: 255 EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTM 314
VD +L L M +GC PD V+Y T+
Sbjct: 197 -------------------------VDGAKKL---------LVEMSNKGCCPDAVSYTTV 222
Query: 315 VRAYSTNGMKNHAKEFQDLVEKMD 338
+ + G+ KE ++L E+ +
Sbjct: 223 ISSMCEVGL---VKEGRELAERFE 243
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 156/337 (46%), Gaps = 6/337 (1%)
Query: 3 GKCKQP--EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK + A LF M +G A+ ++ L+ + +G +D LL M
Sbjct: 272 GLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRK-IS 330
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P+V T+S+LI S +K + LL +M +GI PNT+TYN+LID + + E
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQM 390
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+ M+S+ C+PD+ T N + + + +ID + + + G+ + T+N L+ + +
Sbjct: 391 VDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
+G E + + M IV+Y I++D G+L++ +F + +++
Sbjct: 451 SGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGI 510
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
++ +A K + + + + LD +N ++ R ++ + M
Sbjct: 511 YMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMT 570
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337
+ G PD++TY ++RA+ + + A +L+E+M
Sbjct: 571 EEGHAPDELTYNILIRAHLGD---DDATTAAELIEEM 604
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 154/336 (45%), Gaps = 6/336 (1%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
+C++ A ++ G + +T F LL+ +A L++ M +P +
Sbjct: 135 RCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGH-KPTL 193
Query: 64 NTYSILIKS-CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA-EMELTL 121
T + L+ CL D V L+ M G +PN VTY +++ ++ A MEL L
Sbjct: 194 ITLNTLVNGLCLNGKVSDAV-VLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL-L 251
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
KM + + D + + G +D + + + G + I T+N L+ + A
Sbjct: 252 RKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNA 311
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
G ++ + ++ M K S +VT++++ID+F + G L++ + L + M I P+ +T
Sbjct: 312 GRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITY 371
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
SL+ + + E+ ++ + + D + FN L++ Y + + + M
Sbjct: 372 NSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSL 431
Query: 302 RGCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDLVEK 336
RG + VTY T+V+ + +G AK+ FQ++V +
Sbjct: 432 RGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR 467
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 135/323 (41%), Gaps = 36/323 (11%)
Query: 14 LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC 73
L MV+ G N ++ +L+ +SG A LL M+ + + D YSI+I
Sbjct: 215 LIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEER-NIKLDAVKYSIIIDGL 273
Query: 74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV 133
K + D L ++M +G + + +TYNTLI
Sbjct: 274 CKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG--------------------------- 306
Query: 134 WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY 193
F N+G+ D K I P++ TF++L+DS+ K G + +++
Sbjct: 307 --------GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKE 358
Query: 194 MQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253
M + + +TYN +ID F + L++ + LM S+ P +T L+ Y A +
Sbjct: 359 MMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANR 418
Query: 254 PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRT 313
+ + R + ++ +TV +N LV + + K + + M R +PD V+Y+
Sbjct: 419 IDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKI 478
Query: 314 MVRAYSTNGMKNHAKEFQDLVEK 336
++ NG A E +EK
Sbjct: 479 LLDGLCDNGELEKALEIFGKIEK 501
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 140/318 (44%), Gaps = 3/318 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
+ K KQ E L + M +G + + + +++ + R AFS + + +P
Sbjct: 98 IAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKL-GYEP 156
Query: 62 DVNTYSILIKS-CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
D ++ L+ CL+ + ++ L+ M G +P +T NTL++ ++ +
Sbjct: 157 DTVIFNTLLNGLCLECRVSEALE-LVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVL 215
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+ +M+ +P+ T L SGQ + K + I+ ++I++D K
Sbjct: 216 IDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
G + + M+ + I+TYN +I F AG L R M +I P+ VT
Sbjct: 276 DGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVT 335
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
L+ ++ GK + +L+ + I +T+ +N L+D + + E ++++M
Sbjct: 336 FSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI 395
Query: 301 QRGCKPDKVTYRTMVRAY 318
+GC PD +T+ ++ Y
Sbjct: 396 SKGCDPDIMTFNILINGY 413
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 127/309 (41%), Gaps = 35/309 (11%)
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI-------------------------- 94
P V ++ L + K ++ V AL M ++GI
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 95 ---------RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN 145
P+TV +NTL++ +E + +M+ +P + T+N +
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 146 SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVT 205
+G++ ++ G QP+ T+ +L+ K+G ++ M++ + V
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265
Y+I+ID + G L LF M + K +T +L+ + +AG+ + +LR +
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325
Query: 266 NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKN 325
I + V F+ L+D++ + E +L+ M QRG P+ +TY +++ +
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385
Query: 326 HAKEFQDLV 334
A + DL+
Sbjct: 386 EAIQMVDLM 394
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 117/282 (41%), Gaps = 37/282 (13%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A +L + M+ G NT ++ +L+ + + ++A +++ M + C PD+ T++IL
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI-SKGCDPDIMTFNIL 409
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
I KA D L +MS +G+ NTVTYNTL+ + ++ + +M+S
Sbjct: 410 INGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRV 469
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA--------------------------- 162
PD+ + L ++G+++ + + K + +
Sbjct: 470 RPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWD 529
Query: 163 --------GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214
G++ +NI++ + K + M + ++ +TYNI+I A
Sbjct: 530 LFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHL 589
Query: 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK 256
D L M+S P+ V+ +V +G+ +K
Sbjct: 590 GDDDATTAAELIEEMKSSGF-PADVSTVKMVINMLSSGELDK 630
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 2/178 (1%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E A +LFQ MV + S+ LL +G +KA + ++ + + D+ Y I
Sbjct: 455 EVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSK-MELDIGIYMI 513
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
+I A D L + +G++ + YN +I R ++ ++ KM E
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
PD T N +RA T + E+ +S+G ++T ++++ +G +K
Sbjct: 574 HAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLS-SGELDK 630
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 156/359 (43%), Gaps = 42/359 (11%)
Query: 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY 66
+ +A L MV +GC + ++ +++ + G D AF+LL M+ +P V Y
Sbjct: 201 KASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGK-LEPGVLIY 259
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA---YGRAKMFAEMELTLVK 123
+ +I K D L +M T+GIRPN VTY++LI YGR +++ L
Sbjct: 260 NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR---WSDASRLLSD 316
Query: 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
M+ PDV+T + + AF G++ EK Y++ I PSI T++ L++ +
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376
Query: 184 FEKMSAVMEYMQKYH-------YSWTI----------------------------VTYNI 208
++ + E+M H Y+ I VTYNI
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268
+I +AGD + +F+ M S+ + P+ +T +L+ GK EK V ++ S
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 269 IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327
+ +N +++ + + + + +G KPD V Y TM+ + G K A
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 151/329 (45%), Gaps = 1/329 (0%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
L K K + A LF+ M +G N ++++L+S G + A LL M P
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK-INP 324
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
DV T+S LI + +K + + L +M + I P+ VTY++LI+ + E +
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
M+S+ C PDV T N ++ F +++ + + + G+ + T+NIL+ +A
Sbjct: 385 EFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQA 444
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
G + + + M I+TYN ++D + G L++ +F ++ +++P+ T
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 504
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
++ AGK E + + + D V +N ++ + R E + + M++
Sbjct: 505 NIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 564
Query: 302 RGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
G P+ Y T++RA +G + + E
Sbjct: 565 DGTLPNSGCYNTLIRARLRDGDREASAEL 593
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 151/326 (46%), Gaps = 4/326 (1%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A + M+ G + N + ++LL+ Y S +A +L++ M T QP+ T++ LI
Sbjct: 135 ALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT-GYQPNTVTFNTLI 193
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV-KMLSEDC 129
+ AL+ M +G +P+ VTY +++ + + ++ L+ KM
Sbjct: 194 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCK-RGDTDLAFNLLNKMEQGKL 252
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
EP V N + +D +++ ++ GI+P++ T++ L+ G + S
Sbjct: 253 EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 312
Query: 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249
++ M + + + T++ +IDAF + G L + E L+ M I PS VT SL+ +
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 372
Query: 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309
+ ++ + F+ + D V +N L+ + + K E V M QRG + V
Sbjct: 373 MHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 432
Query: 310 TYRTMVRAYSTNGMKNHAKE-FQDLV 334
TY +++ G + A+E F+++V
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMV 458
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 145/329 (44%), Gaps = 2/329 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+ A LF MV + F+ LLSA + FD SL E M+N + TYSI
Sbjct: 63 DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL-GIPHNHYTYSI 121
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LI + A+L M G PN VT ++L++ Y +K +E + +M
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
+P+ T N + + ++ + G QP + T+ ++++ K G +
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
++ M++ ++ YN +ID + + LF+ M ++ I+P+ VT SL+
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
+ G+ +L + I D F+ L+DA+ + E + + + M +R P
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361
Query: 309 VTYRTMVRAYSTNGMKNHAKE-FQDLVEK 336
VTY +++ + + + AK+ F+ +V K
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMVSK 390
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 1/253 (0%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A +L+ MV D + ++++L++ + D+A + E M + C PDV TY+ L
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMV-SKHCFPDVVTYNTL 402
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
IK K ++ + +MS +G+ NTVTYN LI +A + +M+S+
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
P++ T N L +G+++ +E Q + ++P+I T+NI+++ KAG E
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522
Query: 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249
+ + +V YN +I F R G ++ + LF+ M+ + P+ +L+RA
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582
Query: 250 HAGKPEKLGSVLR 262
G E +++
Sbjct: 583 RDGDREASAELIK 595
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 1/164 (0%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A E+F+ MV +G N ++ LL ++G +KA + E+++ + +P + TY+I+I
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK-MEPTIYTYNIMI 508
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
+ KA + L ++S +G++P+ V YNT+I + R E + +M +
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 568
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL 174
P+ N +RA G + + ++ +S G +T ++
Sbjct: 569 PNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLV 612
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 137/330 (41%), Gaps = 35/330 (10%)
Query: 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY 66
+ EKA EL M GC+ + ++ L+ + +S +KA + + +K+ C PDV TY
Sbjct: 221 KAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTY 280
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS 126
+ +I KA + +LL DM GI P VT+N L+D Y +A E KM+S
Sbjct: 281 TSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMIS 340
Query: 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
C PDV T + + GQ+ + +E+ + G+ P+ T++IL+++ K
Sbjct: 341 FGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLK 400
Query: 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
++ + YN VID F +AG + + + M ++ KP +T L+
Sbjct: 401 ARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI- 459
Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
GH K GR+ E + M GC P
Sbjct: 460 -IGHCMK------------------------------GRM---FEAVSIFHKMVAIGCSP 485
Query: 307 DKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
DK+T +++ GM A + K
Sbjct: 486 DKITVSSLLSCLLKAGMAKEAYHLNQIARK 515
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 138/316 (43%), Gaps = 17/316 (5%)
Query: 14 LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSC 73
L Q+ EGC S L R + A L + C D T++ILI+
Sbjct: 161 LLQSFEVEGCCMVVNSLLNTLVKLDR---VEDAMKLFDEHLRFQSCN-DTKTFNILIRGL 216
Query: 74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA-------KMFAEMELTLVKMLS 126
+K LL MS G P+ VTYNTLI + ++ +MF +++ V
Sbjct: 217 CGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSV---- 272
Query: 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
C PDV T + + +G++ + GI P+ TFN+L+D Y KAG
Sbjct: 273 --CSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLT 330
Query: 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
+ M + +VT+ +ID + R G + Q L+ M + + P+ T L+
Sbjct: 331 AEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILIN 390
Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
A + + K +L + + DI+ +N ++D + + E ++E M+++ CKP
Sbjct: 391 ALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKP 450
Query: 307 DKVTYRTMVRAYSTNG 322
DK+T+ ++ + G
Sbjct: 451 DKITFTILIIGHCMKG 466
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 113/263 (42%), Gaps = 11/263 (4%)
Query: 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG-RAKMFAEMELTLVK 123
TY++L +S KA D + M + G+ PN L+ ++ + K+ L L
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164
Query: 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYE---KFQSAGIQPSINTFNILLDSYGK 180
E C +N L +++ K ++ +FQS TFNIL+
Sbjct: 165 FEVEGC---CMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN---DTKTFNILIRGLCG 218
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-KPSCV 239
G EK ++ M + IVTYN +I F ++ +L + +F+ ++S + P V
Sbjct: 219 VGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVV 278
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T S++ Y AGK + S+L + I V FN LVD Y + + + M
Sbjct: 279 TYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKM 338
Query: 300 QQRGCKPDKVTYRTMVRAYSTNG 322
GC PD VT+ +++ Y G
Sbjct: 339 ISFGCFPDVVTFTSLIDGYCRVG 361
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQME 223
I+ S T+N+L S KAG + + E M+ S ++ +F G L
Sbjct: 99 IRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFAT 158
Query: 224 YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV----LRFIDNSDIMLDTVFFNCL 279
L L++S ++ C+ + SL+ + E + LRF + DT FN L
Sbjct: 159 AL--LLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN----DTKTFNIL 212
Query: 280 VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDL 333
+ + + +L VM GC+PD VTY T+++ + + N A E F+D+
Sbjct: 213 IRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDV 267
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 156/340 (45%), Gaps = 8/340 (2%)
Query: 3 GKCKQPE--KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK+ + A L M +AN ++ ++ + + D A +L M+N +
Sbjct: 234 GLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK-GVR 292
Query: 61 PDVNTYSILIKSCLKAFA-FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
P+V TYS LI SCL + + LLSDM + I PN VT+N LIDA+ + E E
Sbjct: 293 PNVITYSSLI-SCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEK 351
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
+M+ +PD++T + + F ++D + +E S P++ T+N L++ +
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
KA ++ + M + VTY +I F +A D + +F+ M S+ + P+ +
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T +L+ GK EK V ++ S + +N +++ + + + +
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339
+G KPD + Y TM+ + G+K A L KM E
Sbjct: 532 SLKGVKPDVIIYNTMISGFCRKGLKEEADA---LFRKMRE 568
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 36/296 (12%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
L K + + A LF M ++G N ++++L+S + A LL M P
Sbjct: 270 LCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK-INP 328
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
+V T++ LI + +K + + L +M + I P+ TY++LI+ + E +
Sbjct: 329 NVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 388
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQI-------------------------------- 149
M+S+DC P+V T N + F + +I
Sbjct: 389 ELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQA 448
Query: 150 ---DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY 206
D + +++ S G+ P+I T+N LLD K G EK V EY+Q+ TI TY
Sbjct: 449 RDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 508
Query: 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR 262
NI+I+ +AG ++ LF + + +KP + +++ + G E+ ++ R
Sbjct: 509 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFR 564
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 142/317 (44%), Gaps = 1/317 (0%)
Query: 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT 65
K+ A L MV+ G +T +FT L+ +A +L++ M CQP++ T
Sbjct: 169 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR-GCQPNLVT 227
Query: 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125
Y +++ K D LL+ M I N V Y+T+ID+ + + + +M
Sbjct: 228 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 287
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185
++ P+V T + + N + + I P++ TFN L+D++ K G
Sbjct: 288 NKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLV 347
Query: 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245
+ + + M K I TY+ +I+ F L + +++F LM S+ P+ VT +L+
Sbjct: 348 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 407
Query: 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305
+ A + ++ + R + ++ +TV + L+ + + + + V + M G
Sbjct: 408 NGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 467
Query: 306 PDKVTYRTMVRAYSTNG 322
P+ +TY T++ NG
Sbjct: 468 PNIMTYNTLLDGLCKNG 484
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 138/330 (41%), Gaps = 1/330 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+ A LF MV + F LLSA + FD SL E M+ ++ TY+I
Sbjct: 67 DDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRL-GISHNLYTYNI 125
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LI + ALL M G P+ VT ++L++ Y K ++ + +M+
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
PD T + + ++ G QP++ T+ ++++ K G +
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAF 245
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
++ M+ +V Y+ VID+ + LF M ++ ++P+ +T SL+
Sbjct: 246 NLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCL 305
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
+ + +L + I + V FN L+DA+ + E + + + M +R PD
Sbjct: 306 CNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 365
Query: 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338
TY +++ + + + AK +L+ D
Sbjct: 366 FTYSSLINGFCMHDRLDEAKHMFELMISKD 395
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/352 (21%), Positives = 141/352 (40%), Gaps = 36/352 (10%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
+ K K+ + L + M G N ++ L++ + R A +LL M +P
Sbjct: 95 IAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKL-GYEP 153
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
+ T S L+ AL+ M G RP+T+T+ TLI +E +
Sbjct: 154 SIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALV 213
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
+M+ C+P++ T + G ID K ++A I+ ++ ++ ++DS K
Sbjct: 214 DRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKY 273
Query: 182 GH-------FEKM----------------------------SAVMEYMQKYHYSWTIVTY 206
H F +M S ++ M + + +VT+
Sbjct: 274 RHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTF 333
Query: 207 NIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266
N +IDAF + G L + E L+ M I P T SL+ + + ++ + + +
Sbjct: 334 NALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 393
Query: 267 SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318
D + V +N L++ + + K E + M QRG + VTY T++ +
Sbjct: 394 KDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGF 445
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 155/343 (45%), Gaps = 8/343 (2%)
Query: 1 MLGKCKQPEKAHELFQAMVDEG-CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC 59
ML + Q EK HE++ M +EG C +T +++AL+S+Y + G D A L + MK+ +C
Sbjct: 206 MLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKD--NC 263
Query: 60 -QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME 118
QP Y+ L+ K +K L +M G P TY LI G+A E
Sbjct: 264 MQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAY 323
Query: 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS- 177
ML + PDV +N + G G+++ + + + P++ ++N ++ +
Sbjct: 324 GFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKAL 383
Query: 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237
+ H ++S+ + M+ S + TY+I+ID + + +++ L M + P
Sbjct: 384 FESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPC 443
Query: 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297
CSL+ A G A + E + + + + + + + ++ +G+ +E +
Sbjct: 444 PAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFN 503
Query: 298 VMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340
M+ +G PD Y ++ GM N A L+ KM+E
Sbjct: 504 EMKNQGSGPDVYAYNALMSGMVKAGMINEA---NSLLRKMEEN 543
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 2/327 (0%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
K + + A LF M D + +T LL Y + G +KA L E MK C P V
Sbjct: 245 KLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA-GCSPTV 303
Query: 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123
TY+ LIK KA D+ DM G+ P+ V N L++ G+ E+ +
Sbjct: 304 YTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSE 363
Query: 124 MLSEDCEPDVWTMNCTLRA-FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
M C P V + N ++A F + + + ++K ++ + PS T++IL+D Y K
Sbjct: 364 MGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTN 423
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
EK ++E M + + Y +I+A G+A + LF+ ++ S
Sbjct: 424 RVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYA 483
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
+++ +G GK + + + N D +N L+ + E +L M++
Sbjct: 484 VMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEEN 543
Query: 303 GCKPDKVTYRTMVRAYSTNGMKNHAKE 329
GC+ D ++ ++ ++ G+ A E
Sbjct: 544 GCRADINSHNIILNGFARTGVPRRAIE 570
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/354 (21%), Positives = 143/354 (40%), Gaps = 72/354 (20%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKN---TPD-- 58
K + EKA +LF+ M GC ++T L+ G++G D+A+ + M TPD
Sbjct: 280 KVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVV 339
Query: 59 -----------------------------CQPDVNTYSILIKSCLKAFA-FDKVQALLSD 88
C P V +Y+ +IK+ ++ A +V +
Sbjct: 340 FLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDK 399
Query: 89 MSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTL-------- 140
M + P+ TY+ LID Y + E L L++ + E P C+L
Sbjct: 400 MKADSVSPSEFTYSILIDGYCKTNR-VEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458
Query: 141 ----------------------------RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFN 172
+ FG G++ + + ++ G P + +N
Sbjct: 459 RYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYN 518
Query: 173 ILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232
L+ KAG + ++++ M++ I ++NI+++ F R G ++ +F ++
Sbjct: 519 ALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHS 578
Query: 233 RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL 286
IKP VT +L+ + HAG E+ ++R + + D + ++ ++DA G +
Sbjct: 579 GIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNV 632
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 5/215 (2%)
Query: 3 GKCK--QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMK-NTPDC 59
G CK + EKA L + M ++G ++ +L++A G++ ++ A L + +K N +
Sbjct: 418 GYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNV 477
Query: 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
V Y+++IK K + L ++M QG P+ YN L+ +A M E
Sbjct: 478 SSRV--YAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANS 535
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L KM C D+ + N L F +G + +E + +GI+P T+N LL +
Sbjct: 536 LLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFA 595
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214
AG FE+ + +M M+ + + +TY+ ++DA G
Sbjct: 596 HAGMFEEAARMMREMKDKGFEYDAITYSSILDAVG 630
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 131/311 (42%), Gaps = 39/311 (12%)
Query: 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM 89
+ L+ A GR+ + KA S+ K C+P +TY+ +I ++ +KV + ++M
Sbjct: 165 LSELVKALGRAKMVSKALSVFYQAKGR-KCKPTSSTYNSVILMLMQEGQHEKVHEVYTEM 223
Query: 90 STQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQI 149
+G DC PD T + + ++ G+
Sbjct: 224 CNEG----------------------------------DCFPDTITYSALISSYEKLGRN 249
Query: 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV 209
D+ + +++ + +QP+ + LL Y K G EK + E M++ S T+ TY +
Sbjct: 250 DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTEL 309
Query: 210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269
I G+AG + + ++ M + + P V L +L+ G G+ E+L +V +
Sbjct: 310 IKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRC 369
Query: 270 MLDTVFFNCLVDAYGRLKC-FAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAK 328
V +N ++ A K +E+ + M+ P + TY ++ Y N +
Sbjct: 370 TPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKT---NRVE 426
Query: 329 EFQDLVEKMDE 339
+ L+E+MDE
Sbjct: 427 KALLLLEEMDE 437
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 157/359 (43%), Gaps = 41/359 (11%)
Query: 3 GKCKQPEKAH--ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK H E+ M+ EG D + ++ +++S + G +A +L+ M T DC
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMI-TRDCS 362
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF-AEMEL 119
P+ TY+ LI + K ++ L ++++GI P+ T+N+LI + MEL
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
+M S+ CEPD +T N + + + G++D ++ + +G S+ T+N L+D +
Sbjct: 423 -FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA--------------------------- 212
KA + + + M+ + S VTYN +ID
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKY 541
Query: 213 --------FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264
F R GD+K+ + + M S +P VT +L+ AG+ E +LR I
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601
Query: 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL-EVMQQRGCKPDKVTYRTMVRAYSTNG 322
I L +N ++ R + E + E+++Q PD V+YR + R G
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGG 660
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 149/362 (41%), Gaps = 36/362 (9%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
LG+ + ++ + M C+ T +F L+ +Y + L D+ S+++ M + +P
Sbjct: 93 LGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKP 152
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
D + Y+ ++ + + V+ + MS GI+P+ T+N LI A RA L L
Sbjct: 153 DTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILML 212
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG------------------ 163
M S PD T ++ + G +D + E+ G
Sbjct: 213 EDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKE 272
Query: 164 ---------IQ---------PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVT 205
IQ P TFN L++ KAGH + +M+ M + Y + T
Sbjct: 273 GRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYT 332
Query: 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265
YN VI + G++K+ + M + P+ VT +L+ + E+ + R +
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392
Query: 266 NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKN 325
+ I+ D FN L+ + + E M+ +GC+PD+ TY ++ + + G +
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLD 452
Query: 326 HA 327
A
Sbjct: 453 EA 454
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 144/323 (44%), Gaps = 4/323 (1%)
Query: 3 GKCKQP--EKAHELFQAMVDE-GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC 59
G CK+ E A Q M ++ G + +F L++ ++G A +++ M
Sbjct: 268 GFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE-GY 326
Query: 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
PDV TY+ +I K + +L M T+ PNTVTYNTLI + E
Sbjct: 327 DPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATE 386
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
+ S+ PDV T N ++ + + +E+ +S G +P T+N+L+DS
Sbjct: 387 LARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLC 446
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
G ++ +++ M+ + +++TYN +ID F +A ++ E +F M + + V
Sbjct: 447 SKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSV 506
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T +L+ + + E ++ + D +N L+ + R + +++ M
Sbjct: 507 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAM 566
Query: 300 QQRGCKPDKVTYRTMVRAYSTNG 322
GC+PD VTY T++ G
Sbjct: 567 TSNGCEPDIVTYGTLISGLCKAG 589
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 2/245 (0%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A ELF+ M +GC+ + ++ L+ + G D+A ++L+ M+ + C V TY+ LI
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS-GCARSVITYNTLI 477
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
KA + + + +M G+ N+VTYNTLID +++ + + +M+ E +
Sbjct: 478 DGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK 537
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190
PD +T N L F G I + S G +P I T+ L+ KAG E S +
Sbjct: 538 PDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597
Query: 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR-LMRSERIKPSCVTLCSLVRAYG 249
+ +Q + T YN VI R + LFR ++ P V+ + R
Sbjct: 598 LRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLC 657
Query: 250 HAGKP 254
+ G P
Sbjct: 658 NGGGP 662
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 139/327 (42%), Gaps = 3/327 (0%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A + + MV+ GC + S ++ + + G + A + ++ M N PD T++ L+
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLV 302
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
KA ++ M +G P+ TYN++I + E L +M++ DC
Sbjct: 303 NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190
P+ T N + Q++ + S GI P + TFN L+ + +
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422
Query: 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250
E M+ TYN++ID+ G L + + + M S +T +L+ +
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482
Query: 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT 310
A K + + ++ + ++V +N L+D + + + +++ M G KPDK T
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYT 542
Query: 311 YRTMVRAYSTNGMKNHAKEFQDLVEKM 337
Y +++ + G K+ D+V+ M
Sbjct: 543 YNSLLTHFCRGG---DIKKAADIVQAM 566
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 145/312 (46%), Gaps = 18/312 (5%)
Query: 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM 89
+ +L GRSG FD +LE MK++ C+ +T+ ILI+S + D++ +++ M
Sbjct: 86 YEEILLRLGRSGSFDDMKKILEDMKSS-RCEMGTSTFLILIESYAQFELQDEILSVVDWM 144
Query: 90 STQ-GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ 148
+ G++P+T YN +++ +E++ KM +PDV T N ++A + Q
Sbjct: 145 IDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQ 204
Query: 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI 208
+ E S G+ P TF ++ Y + G + + E M ++ SW+ V+ N+
Sbjct: 205 LRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNV 264
Query: 209 VIDAFGRAGDLKQ-MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267
++ F + G ++ + ++ + + P T +LV AG V I+
Sbjct: 265 IVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGH------VKHAIEIM 318
Query: 268 DIML------DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321
D+ML D +N ++ +L E VL+ M R C P+ VTY T++ ST
Sbjct: 319 DVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLI---STL 375
Query: 322 GMKNHAKEFQDL 333
+N +E +L
Sbjct: 376 CKENQVEEATEL 387
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 93/234 (39%), Gaps = 41/234 (17%)
Query: 140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM----- 194
L G SG D M+K E +S+ + +TF IL++SY + +++ +V+++M
Sbjct: 90 LLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFG 149
Query: 195 ---QKYHYS------------------------WTI----VTYNIVIDAFGRAGDLKQME 223
+ Y+ W I T+N++I A RA L+
Sbjct: 150 LKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAI 209
Query: 224 YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283
+ M S + P T ++++ Y G + + + V N +V +
Sbjct: 210 LMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF 269
Query: 284 ---GRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334
GR++ + + E+ Q G PD+ T+ T+V G HA E D++
Sbjct: 270 CKEGRVE--DALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVM 321
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 150/334 (44%), Gaps = 7/334 (2%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A E+F MV G N Q+F L++ Y G + A +LE M + PD TY+ ++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
K+ K ++ LL DM G+ PN VTYN L+ Y + E + M +
Sbjct: 248 KAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVL 307
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190
PD+ T N + N+G + + + +S +QP + T+N L+D + G + +
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKL 367
Query: 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR----LMRSERIKPSCVTLCSLVR 246
ME M+ VT+NI + + ++ E + R L+ P VT +L++
Sbjct: 368 MEQMENDGVKANQVTHNISLKWLCKE---EKREAVTRKVKELVDMHGFSPDIVTYHTLIK 424
Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
AY G ++R + I ++T+ N ++DA + + E +L +RG
Sbjct: 425 AYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIV 484
Query: 307 DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340
D+VTY T++ + A E D ++K+ T
Sbjct: 485 DEVTYGTLIMGFFREEKVEKALEMWDEMKKVKIT 518
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 137/294 (46%), Gaps = 6/294 (2%)
Query: 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK---AFAFDKVQALL 86
F LSAY G A + + M +P++ T + L+ ++ +F+ + +
Sbjct: 134 FDIALSAYLHEGKPHVALQIFQKMIRL-KLKPNLLTCNTLLIGLVRYPSSFSISSAREVF 192
Query: 87 SDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-DCEPDVWTMNCTLRAFGN 145
DM G+ N T+N L++ Y + L +M+SE PD T N L+A
Sbjct: 193 DDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSK 252
Query: 146 SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVT 205
G++ +++ + G+ P+ T+N L+ Y K G ++ ++E M++ + + T
Sbjct: 253 KGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCT 312
Query: 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265
YNI+I+ AG +++ L M+S +++P VT +L+ G + ++ ++
Sbjct: 313 YNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQME 372
Query: 266 NSDIMLDTVFFNCLVDAYGR-LKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY 318
N + + V N + + K A + V E++ G PD VTY T+++AY
Sbjct: 373 NDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAY 426
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 146/342 (42%), Gaps = 14/342 (4%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A +L + M ++G AN + L + + ++ + + PD+ TY L
Sbjct: 363 EARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTL 422
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
IK+ LK ++ +M +GI+ NT+T NT++DA + + E L
Sbjct: 423 IKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGF 482
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
D T + F +++ + +++ + I P+++TFN L+ G H K
Sbjct: 483 IVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLI---GGLCHHGKTEL 539
Query: 190 VMEYMQKYHYSWTI---VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
ME + S + T+N +I + + G +++ + KP T L+
Sbjct: 540 AMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLN 599
Query: 247 AYGHAGKPEKLGSVLRFIDN--SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC 304
G EK L F + + +DTV +N ++ A+ + K E +L M+++G
Sbjct: 600 GLCKEGMTEK---ALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGL 656
Query: 305 KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKR 346
+PD+ TY + + +G E +L++K +MKR
Sbjct: 657 EPDRFTYNSFISLLMEDG---KLSETDELLKKFSGKFGSMKR 695
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 144/358 (40%), Gaps = 45/358 (12%)
Query: 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS 72
EL M G N ++ L+ Y + G +AF ++E MK T + PD+ TY+ILI
Sbjct: 261 ELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQT-NVLPDLCTYNILING 319
Query: 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID-------AYGRAKMFAEMELTLVKM- 124
A + + L+ M + ++P+ VTYNTLID + K+ +ME VK
Sbjct: 320 LCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKAN 379
Query: 125 -------LSEDCE---------------------PDVWTMNCTLRAFGNSGQIDTMEKCY 156
L C+ PD+ T + ++A+ G + +
Sbjct: 380 QVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMM 439
Query: 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216
+ GI+ + T N +LD+ K ++ ++ K + VTY +I F R
Sbjct: 440 REMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFRE 499
Query: 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFF 276
+++ ++ M+ +I P+ T SL+ H GK E + S ++ D F
Sbjct: 500 EKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTF 559
Query: 277 NCLVDAY---GRL-KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
N ++ Y GR+ K F + + KPD T ++ GM A F
Sbjct: 560 NSIILGYCKEGRVEKAFEFYNESI----KHSFKPDNYTCNILLNGLCKEGMTEKALNF 613
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 102/217 (47%), Gaps = 4/217 (1%)
Query: 123 KMLSEDCEPDVWTMNCTLRA---FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
KM+ +P++ T N L + +S I + + ++ G+ ++ TFN+L++ Y
Sbjct: 156 KMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYC 215
Query: 180 KAGHFEKMSAVMEYM-QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238
G E ++E M ++ + VTYN ++ A + G L ++ L M+ + P+
Sbjct: 216 LEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNR 275
Query: 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298
VT +LV Y G ++ ++ + ++++ D +N L++ E +++
Sbjct: 276 VTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDA 335
Query: 299 MQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335
M+ +PD VTY T++ G+ A++ + +E
Sbjct: 336 MKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQME 372
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLL-EHMKNTPDCQPDVNTYS 67
E A E F + + G + +F +++ Y + G +KAF E +K++ +PD T +
Sbjct: 538 ELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHS--FKPDNYTCN 595
Query: 68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127
IL+ K +K + + + +TVTYNT+I A+ + K E L +M +
Sbjct: 596 ILLNGLCKEGMTEKALNFFNTLIEER-EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEK 654
Query: 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159
EPD +T N + G++ ++ +KF
Sbjct: 655 GLEPDRFTYNSFISLLMEDGKLSETDELLKKF 686
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 98/261 (37%), Gaps = 37/261 (14%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
L K ++ ++AH L + G + ++ L+ + R +KA + + MK P
Sbjct: 461 LCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKV-KITP 519
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
V+T++ LI + +++ G+ P+ T+N++I Y +
Sbjct: 520 TVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCK----------- 568
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
G+++ + Y + +P T NILL+ K
Sbjct: 569 ------------------------EGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKE 604
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
G EK + + T VTYN +I AF + LK+ L M + ++P T
Sbjct: 605 GMTEKALNFFNTLIEEREVDT-VTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTY 663
Query: 242 CSLVRAYGHAGKPEKLGSVLR 262
S + GK + +L+
Sbjct: 664 NSFISLLMEDGKLSETDELLK 684
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 147/327 (44%), Gaps = 3/327 (0%)
Query: 3 GKCKQPE--KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK+ + A L + M +A+ +T ++ A + A +L M N +
Sbjct: 229 GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN-KGIR 287
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P+V TY+ LI+ + LLSDM + I PN VT++ LIDA+ + E E
Sbjct: 288 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 347
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+M+ +PD++T + + F ++D + +E S P++ T+N L+ + K
Sbjct: 348 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK 407
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
A E+ + M + VTYN +I +AGD + +F+ M S+ + P +T
Sbjct: 408 AKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIIT 467
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
L+ GK EK V ++ S + D +N +++ + + + +
Sbjct: 468 YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 527
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHA 327
+G KP+ + Y TM+ + G+K A
Sbjct: 528 LKGVKPNVIIYTTMISGFCRKGLKEEA 554
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 138/315 (43%), Gaps = 36/315 (11%)
Query: 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT 65
K A LF M ++G N ++ +L+ G + A LL M P+V T
Sbjct: 269 KNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK-INPNVVT 327
Query: 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125
+S LI + +K + + L +M + I P+ TY++LI+ + E + M+
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 387
Query: 126 SEDCEPDVWTMNCTLRAF----------------------GNS-------------GQID 150
S+DC P+V T N ++ F GN+ G D
Sbjct: 388 SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCD 447
Query: 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210
+K ++K S G+ P I T++ILLD K G EK V EY+QK I TYNI+I
Sbjct: 448 MAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMI 507
Query: 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270
+ +AG ++ LF + + +KP+ + +++ + G E+ ++ R + +
Sbjct: 508 EGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTL 567
Query: 271 LDTVFFNCLVDAYGR 285
++ +N L+ A R
Sbjct: 568 PNSGTYNTLIRARLR 582
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 146/330 (44%), Gaps = 1/330 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+ A +LF MV + F LLSA + FD SL E M+N D+ +Y+I
Sbjct: 62 DDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLR-ISYDLYSYNI 120
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LI + A+L M G P+ VT ++L++ Y K +E + +M +
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
+P+ T N + + ++ + G QP + T+ +++ K G +
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
++++ M+K +V Y +IDA ++ LF M ++ I+P+ VT SL+R
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
+ G+ +L + I + V F+ L+DA+ + E + + + M +R PD
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338
TY +++ + + + AK +L+ D
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKD 390
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 37/282 (13%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A +L+ M+ D + ++++L++ + D+A + E M + DC P+V TY+ L
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI-SKDCFPNVVTYNTL 401
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
IK KA ++ L +MS +G+ NTVTYNTLI +A + KM+S+
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE---- 185
PD+ T + L G+++ +E Q + ++P I T+NI+++ KAG E
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521
Query: 186 -------------------------------KMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214
+ A+ M++ TYN +I A
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 581
Query: 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK 256
R GD L + MRS T+ S+V H G+ EK
Sbjct: 582 RDGDKAASAELIKEMRSCGFVGDASTI-SMVINMLHDGRLEK 622
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 15/215 (6%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
K K+ E+ ELF+ M G NT ++ L+ ++G D A + + M + PD+
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV-SDGVPPDI 465
Query: 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA-------KMFAE 116
TYSIL+ K +K + + + P+ TYN +I+ +A +F
Sbjct: 466 ITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS 525
Query: 117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD 176
+ L VK P+V + F G + + + + + G P+ T+N L+
Sbjct: 526 LSLKGVK-------PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 578
Query: 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID 211
+ + G + +++ M+ + T ++VI+
Sbjct: 579 ARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 3 GKCK--QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK + E +LF ++ +G N +T ++S + R GL ++A +L MK
Sbjct: 509 GMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTL- 567
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P+ TY+ LI++ L+ L+ +M + G + T + +I+ + +E +
Sbjct: 568 PNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGR----LEKS 623
Query: 121 LVKMLS 126
++MLS
Sbjct: 624 YLEMLS 629
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 141/336 (41%), Gaps = 4/336 (1%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
K Q A EL + M + + ++ ++ + G D AF+L M+ + D+
Sbjct: 224 KSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME-IKGFKADI 282
Query: 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123
Y+ LI+ A +D LL DM + I P+ V ++ LID + + E E +
Sbjct: 283 IIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKE 342
Query: 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
M+ PD T + F Q+D + S G P+I TFNIL++ Y KA
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402
Query: 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
+ + M VTYN +I F G L+ + LF+ M S R++P V+
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462
Query: 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
L+ G+PEK + I+ S + LD +N ++ + + + +G
Sbjct: 463 LLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522
Query: 304 CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339
KPD TY M+ G + A L KM+E
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADL---LFRKMEE 555
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 132/283 (46%), Gaps = 9/283 (3%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A EL + M+ G +T ++T+L+ + + DKA +L+ M + C P++ T++IL
Sbjct: 335 EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMV-SKGCGPNIRTFNIL 393
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY---GRAKMFAEMELTLVKMLS 126
I KA D L MS +G+ +TVTYNTLI + G+ ++ E+ +M+S
Sbjct: 394 INGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKEL---FQEMVS 450
Query: 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
PD+ + L ++G+ + + +EK + + ++ I +NI++ A +
Sbjct: 451 RRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDD 510
Query: 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
+ + + TYNI+I + G L + + LFR M + P+ T L+R
Sbjct: 511 AWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIR 570
Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY--GRLK 287
A+ G K ++ I +D +VD GRLK
Sbjct: 571 AHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRLK 613
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 141/328 (42%), Gaps = 1/328 (0%)
Query: 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY 66
+ + A +LFQ M F+ L S R+ +D L + M+ ++ T
Sbjct: 52 KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQME-LKGIAHNLYTL 110
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS 126
SI+I C + + + + G P+TVT++TLI+ +E + +M+
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE 170
Query: 127 EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186
+P + T+N + +G++ ++ G QP+ T+ +L K+G
Sbjct: 171 MGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTAL 230
Query: 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246
++ M++ V Y+I+ID + G L LF M + K + +L+R
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIR 290
Query: 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
+ +AG+ + +LR + I D V F+ L+D + + E + + + M QRG P
Sbjct: 291 GFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISP 350
Query: 307 DKVTYRTMVRAYSTNGMKNHAKEFQDLV 334
D VTY +++ + + A DL+
Sbjct: 351 DTVTYTSLIDGFCKENQLDKANHMLDLM 378
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 137/322 (42%), Gaps = 3/322 (0%)
Query: 3 GKCKQP--EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK + A LF M +G A+ +T L+ + +G +D LL M
Sbjct: 256 GLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK-IT 314
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV +S LI +K + + L +M +GI P+TVTY +LID + + +
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHM 374
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
L M+S+ C P++ T N + + + ID + + K G+ T+N L+ + +
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
G E + + M IV+Y I++D G+ ++ +F + +++
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
++ +A K + + + + D +N ++ + +E + M+
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554
Query: 301 QRGCKPDKVTYRTMVRAYSTNG 322
+ G P+ TY ++RA+ G
Sbjct: 555 EDGHSPNGCTYNILIRAHLGEG 576
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 139/334 (41%), Gaps = 15/334 (4%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A EL MV+ G + AL++ +G A L++ M T QP+ TY +
Sbjct: 160 EALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG-FQPNEVTYGPV 218
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA-------KMFAEMELTLV 122
+K K+ LL M + I+ + V Y+ +ID + +F EME+
Sbjct: 219 LKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF 278
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
K D+ +R F +G+ D K I P + F+ L+D + K G
Sbjct: 279 K-------ADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEG 331
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
+ + + M + S VTY +ID F + L + ++ LM S+ P+ T
Sbjct: 332 KLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFN 391
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
L+ Y A + + R + ++ DTV +N L+ + L K + + M R
Sbjct: 392 ILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR 451
Query: 303 GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336
+PD V+Y+ ++ NG A E + +EK
Sbjct: 452 RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEK 485
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 1/168 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E A ELFQ MV + S+ LL +G +KA + E ++ + + D+ Y+I
Sbjct: 439 EVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK-MELDIGIYNI 497
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
+I A D L + +G++P+ TYN +I + +E +L KM +
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD 176
P+ T N +RA G K E+ + G +T +++D
Sbjct: 558 HSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVD 605
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 159/365 (43%), Gaps = 39/365 (10%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A L MV+ GC + ++ ++++ RSG A LL M+ + + DV TYS +
Sbjct: 176 EAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEER-NVKADVFTYSTI 234
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
I S + D +L +M T+GI+ + VTYN+L+ +A + + L L M+S +
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
P+V T N L F G++ + Y++ + GI P+I T+N L+D Y + +
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354
Query: 190 VMEYMQKYHYSWTI-----------------------------------VTYNIVIDAFG 214
+++ M + S I VTY+I++ F
Sbjct: 355 MLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC 414
Query: 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV 274
++G +K E LF+ M S + P +T L+ GK EK + + S + L V
Sbjct: 415 QSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIV 474
Query: 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334
+ +++ + + + + +G KP+ +TY M+ G E L+
Sbjct: 475 MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKG---SLSEANILL 531
Query: 335 EKMDE 339
KM+E
Sbjct: 532 RKMEE 536
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 147/314 (46%), Gaps = 1/314 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+ A LF+ M +G ++ ++ +L+ ++G ++ LL+ M + + P+V T+++
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV-SREIVPNVITFNV 303
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
L+ +K + L +M T+GI PN +TYNTL+D Y +E L M+
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
C PD+ T ++ + ++D K + G+ + T++IL+ + ++G +
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
+ + M + ++TY I++D G L++ +F ++ ++ V +++
Sbjct: 424 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGM 483
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
GK E ++ + + + + + ++ + +E +L M++ G P+
Sbjct: 484 CKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPND 543
Query: 309 VTYRTMVRAYSTNG 322
TY T++RA+ +G
Sbjct: 544 CTYNTLIRAHLRDG 557
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 135/276 (48%), Gaps = 1/276 (0%)
Query: 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
+PD T++ LIK + L+ M G +P+ VTYN++++ R+ +
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L KM + + DV+T + + + G ID +++ ++ GI+ S+ T+N L+
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
KAG + + +++ M ++T+N+++D F + G L++ L++ M + I P+ +
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T +L+ Y + + ++L + + D V F L+ Y +K + V +
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI 394
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDLV 334
+RG + VTY +V+ + +G A+E FQ++V
Sbjct: 395 SKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 141/316 (44%), Gaps = 9/316 (2%)
Query: 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY 66
+ + A LFQ M+ + F+ SA R+ F+ + ++ ++ T
Sbjct: 68 KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLE-LNGIAHNIYTL 126
Query: 67 SILI----KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
+I+I + C FA+ ++L + G P+T T+NTLI +E + +
Sbjct: 127 NIMINCFCRCCKTCFAY----SVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVD 182
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
+M+ C+PDV T N + SG K + ++ + T++ ++DS + G
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242
+ ++ + M+ ++VTYN ++ +AG L + M S I P+ +T
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302
Query: 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302
L+ + GK ++ + + + I + + +N L+D Y +E +L++M +
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN 362
Query: 303 GCKPDKVTYRTMVRAY 318
C PD VT+ ++++ Y
Sbjct: 363 KCSPDIVTFTSLIKGY 378
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 138/304 (45%), Gaps = 10/304 (3%)
Query: 39 RSGLFD----KAFSLLEHM-KNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG 93
RSG+ D A +L + M ++ P P + +S + + F+ V + G
Sbjct: 61 RSGIVDIKKDDAIALFQEMIRSRP--LPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNG 118
Query: 94 IRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME 153
I N T N +I+ + R L K++ EPD T N ++ G++
Sbjct: 119 IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAV 178
Query: 154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAF 213
++ G QP + T+N +++ ++G ++ M++ + + TY+ +ID+
Sbjct: 179 VLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSL 238
Query: 214 GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT 273
R G + LF+ M ++ IK S VT SLVR AGK +L+ + + +I+ +
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNV 298
Query: 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333
+ FN L+D + + E + + M RG P+ +TY T++ Y M+N E ++
Sbjct: 299 ITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC---MQNRLSEANNM 355
Query: 334 VEKM 337
++ M
Sbjct: 356 LDLM 359
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 1/166 (0%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A ELFQ MV G + ++ LL +G +KA + E ++ + + Y+ +I
Sbjct: 422 AEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK-MDLGIVMYTTII 480
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
+ K + L + +G++PN +TY +I + +E + L KM +
Sbjct: 481 EGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNA 540
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLD 176
P+ T N +RA G + K E+ +S G ++ +++D
Sbjct: 541 PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 84/206 (40%), Gaps = 1/206 (0%)
Query: 6 KQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT 65
K+ + ++F+ + G AN +++ L+ + +SG A L + M + PDV T
Sbjct: 382 KRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV-SHGVLPDVMT 440
Query: 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125
Y IL+ +K + D+ + V Y T+I+ + + +
Sbjct: 441 YGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLP 500
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185
+ +P+V T + G + K + G P+ T+N L+ ++ + G
Sbjct: 501 CKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLT 560
Query: 186 KMSAVMEYMQKYHYSWTIVTYNIVID 211
+ ++E M+ +S + +VID
Sbjct: 561 ASAKLIEEMKSCGFSADASSIKMVID 586
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 159/326 (48%), Gaps = 12/326 (3%)
Query: 18 MVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF 77
+V G + SF +++S + G A ++ M C+PDV +Y+ LI +
Sbjct: 47 LVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRF-GCEPDVISYNSLIDGHCRNG 105
Query: 78 AFDKVQALLSDM-STQGI--RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW 134
+L + ++ G +P+ V++N+L + + + KM E+ + + ML + C P+V
Sbjct: 106 DIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVML-KCCSPNVV 164
Query: 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194
T + + F SG++ K + + + P++ TF L+D Y KAG E ++ + M
Sbjct: 165 TYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEM 224
Query: 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254
++ S +VTY +ID F + G++++ E ++ M +R++P+ + +++ + G
Sbjct: 225 RRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDS 284
Query: 255 EKLGSVLRFIDNSDIMLDTVFFNCLVDAY---GRLKCFAEMKGVLEVMQQRGCKPDKVTY 311
+ L + N + LD + ++ G+LK E ++E M++ PD V +
Sbjct: 285 DNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLK---EATEIVEDMEKSDLVPDMVIF 341
Query: 312 RTMVRAYSTNG-MKNHAKEFQDLVEK 336
TM+ AY +G MK + L+E+
Sbjct: 342 TTMMNAYFKSGRMKAAVNMYHKLIER 367
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 134/355 (37%), Gaps = 43/355 (12%)
Query: 5 CKQPEKAHEL--FQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
CK E L F +M + N +FT L+ Y ++G + A SL + M+ +
Sbjct: 174 CKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVR-MSLN 232
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR-----------A 111
V TY+ LI K + + + S M + PN++ Y T+ID + + A
Sbjct: 233 VVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLA 292
Query: 112 KMFAE-MELTLVK-----------------------MLSEDCEPDVWTMNCTLRAFGNSG 147
KM + M L + M D PD+ + A+ SG
Sbjct: 293 KMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSG 352
Query: 148 QIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207
++ Y K G +P + + ++D K G + + V ++K + V Y
Sbjct: 353 RMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHE-AIVYFCIEKAND----VMYT 407
Query: 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS 267
++IDA + GD ++E LF + + P S + G + +
Sbjct: 408 VLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQE 467
Query: 268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322
++LD + + L+ E + V + M G PD + ++RAY G
Sbjct: 468 GLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEG 522
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 122/300 (40%), Gaps = 6/300 (2%)
Query: 23 CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82
C N +++ + + +SG A MK P+V T++ LI KA +
Sbjct: 159 CSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDA-LSPNVVTFTCLIDGYCKAGDLEVA 217
Query: 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142
+L +M + N VTY LID + + E +M+ + EP+ +
Sbjct: 218 VSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDG 277
Query: 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT 202
F G D K K + G++ I + +++ G ++ + ++E M+K
Sbjct: 278 FFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPD 337
Query: 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR 262
+V + +++A+ ++G +K ++ + +P V L +++ G+ +
Sbjct: 338 MVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFC 397
Query: 263 FIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322
+D+M + L+DA + F E++ + + + G PDK Y + + G
Sbjct: 398 IEKANDVM-----YTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQG 452
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 95/247 (38%), Gaps = 37/247 (14%)
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
L ++S P + N + GQ+ E G +P + ++N L+D + +
Sbjct: 44 LAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCR 103
Query: 181 AGHFEKMSAVMEYMQKYH-------------------------------------YSWTI 203
G S V+E ++ H S +
Sbjct: 104 NGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNV 163
Query: 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRF 263
VTY+ ID F ++G+L+ F M+ + + P+ VT L+ Y AG E S+ +
Sbjct: 164 VTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKE 223
Query: 264 IDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323
+ + L+ V + L+D + + + + M + +P+ + Y T++ + G
Sbjct: 224 MRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGD 283
Query: 324 KNHAKEF 330
++A +F
Sbjct: 284 SDNAMKF 290
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/195 (17%), Positives = 82/195 (42%), Gaps = 10/195 (5%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
K + + A ++ +++ G + + + + ++ ++G +A C
Sbjct: 350 KSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYF--------CIEKA 401
Query: 64 N--TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
N Y++LI + K F +V+ L S +S G+ P+ Y + I + +
Sbjct: 402 NDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLK 461
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
+M+ E D+ + + G + + +++ ++GI P F++L+ +Y K
Sbjct: 462 TRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKE 521
Query: 182 GHFEKMSAVMEYMQK 196
G+ S ++ MQ+
Sbjct: 522 GNMAAASDLLLDMQR 536
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 9/217 (4%)
Query: 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD 62
GK K+ A E+ + M + FT +++AY +SG A ++ H +PD
Sbjct: 317 GKLKE---ATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMY-HKLIERGFEPD 372
Query: 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122
V S +I K + + N V Y LIDA + F E+E
Sbjct: 373 VVALSTMIDGIAKNGQLHEAIVYFCIE-----KANDVMYTVLIDALCKEGDFIEVERLFS 427
Query: 123 KMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAG 182
K+ PD + + G + K + G+ + + L+ G
Sbjct: 428 KISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKG 487
Query: 183 HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL 219
+ V + M S ++++I A+ + G++
Sbjct: 488 LMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNM 524
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 1/145 (0%)
Query: 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84
AN +T L+ A + G F + L + PD Y+ I K
Sbjct: 401 ANDVMYTVLIDALCKEGDFIEVERLFSKISEA-GLVPDKFMYTSWIAGLCKQGNLVDAFK 459
Query: 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144
L + M +G+ + + Y TLI + E +ML+ PD + +RA+
Sbjct: 460 LKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYE 519
Query: 145 NSGQIDTMEKCYEKFQSAGIQPSIN 169
G + Q G+ +++
Sbjct: 520 KEGNMAAASDLLLDMQRRGLVTAVS 544
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 149/328 (45%), Gaps = 11/328 (3%)
Query: 7 QPEKAHE---LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
Q KA E L + MV +GC + ++ A+++ + G D A +LL M+ + DV
Sbjct: 192 QHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGK-IEADV 250
Query: 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA---YGRAKMFAEMELT 120
Y+ +I K D L + M T+GI+P+ TYN LI YGR +++
Sbjct: 251 VIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGR---WSDASRL 307
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY-EKFQSAGIQPSINTFNILLDSYG 179
L ML ++ PD+ N + AF G++ EK Y E +S P + +N L+ +
Sbjct: 308 LSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFC 367
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K E+ V M + VTY +I F +A D + +F+ M S+ + P +
Sbjct: 368 KYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIM 427
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T L+ + G E V ++ D+ LD V + +++A + + + +
Sbjct: 428 TYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSL 487
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHA 327
+G KP+ VTY TM+ + G+K A
Sbjct: 488 SLKGVKPNVVTYTTMMSGFCRKGLKEEA 515
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 148/341 (43%), Gaps = 43/341 (12%)
Query: 3 GKCK--QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK +P+ A L M +A+ + ++ + D AF L M+ T +
Sbjct: 224 GLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME-TKGIK 282
Query: 61 PDVNTYSILIKSCLKAFA-FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
PDV TY+ LI SCL + + LLSDM + I P+ V +N LIDA+ + E E
Sbjct: 283 PDVFTYNPLI-SCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEK 341
Query: 120 TLVKML-SEDCEPDVWTMNCTLRAF----------------------GNS---------- 146
+M+ S+ C PDV N ++ F GN+
Sbjct: 342 LYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGF 401
Query: 147 ---GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI 203
D + +++ S G+ P I T+NILLD G+ E V EYMQK I
Sbjct: 402 FQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDI 461
Query: 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRF 263
VTY +I+A +AG ++ LF + + +KP+ VT +++ + G E+ ++
Sbjct: 462 VTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVE 521
Query: 264 IDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC 304
+ + ++ +N L+ A RL+ E + + R C
Sbjct: 522 MKEDGPLPNSGTYNTLIRA--RLRDGDEAASAELIKEMRSC 560
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 133/311 (42%), Gaps = 2/311 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+ A LF MV + F+ LLSA + FD SL E M+N ++ TYSI
Sbjct: 57 DDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNL-GISHNLYTYSI 115
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
I + A+L M G P+ VT N+L++ + +E + +M+
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
+PD T + + E+ G QP + T+ +++ K G +
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
++ M+K +V YN +ID + + LF M ++ IKP T L+
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCL 295
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL-EVMQQRGCKPD 307
+ G+ +L + +I D VFFN L+DA+ + E + + E+++ + C PD
Sbjct: 296 CNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPD 355
Query: 308 KVTYRTMVRAY 318
V Y T+++ +
Sbjct: 356 VVAYNTLIKGF 366
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 143/318 (44%), Gaps = 4/318 (1%)
Query: 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY 66
Q A + M+ G + + +LL+ + +A +L++ M QPD T+
Sbjct: 125 QLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM-GYQPDTVTF 183
Query: 67 SILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV-KML 125
+ L+ + + AL+ M +G +P+ VTY +I+ + + ++ L L+ KM
Sbjct: 184 TTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCK-RGEPDLALNLLNKME 242
Query: 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185
E DV N + +D + K ++ GI+P + T+N L+ G +
Sbjct: 243 KGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWS 302
Query: 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF-RLMRSERIKPSCVTLCSL 244
S ++ M + + + +V +N +IDAF + G L + E L+ +++S+ P V +L
Sbjct: 303 DASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTL 362
Query: 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC 304
++ + + E+ V R + ++ +TV + L+ + + + + V + M G
Sbjct: 363 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 422
Query: 305 KPDKVTYRTMVRAYSTNG 322
PD +TY ++ NG
Sbjct: 423 HPDIMTYNILLDGLCNNG 440
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 125/308 (40%), Gaps = 12/308 (3%)
Query: 31 TALLSAYGRSGL-FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDM 89
T LL R+ L ++++F+ ++ DC+ + L + L+ D L DM
Sbjct: 17 TVLLKGNPRTTLCWERSFA----GASSDDCREN------LSRKVLQDLKLDDAIGLFGDM 66
Query: 90 STQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQI 149
P+ V ++ L+ A + F + +M + +++T + + F Q+
Sbjct: 67 VKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQL 126
Query: 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV 209
K G PSI T N LL+ + + A+++ M + Y VT+ +
Sbjct: 127 SLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTL 186
Query: 210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269
+ + + L M + +P VT +++ G+P+ ++L ++ I
Sbjct: 187 VHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKI 246
Query: 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE 329
D V +N ++D + K + + M+ +G KPD TY ++ G + A
Sbjct: 247 EADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASR 306
Query: 330 -FQDLVEK 336
D++EK
Sbjct: 307 LLSDMLEK 314
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 1/166 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+ A +F+ MV +G + ++ LL +G + A + E+M+ D + D+ TY+
Sbjct: 408 DNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKR-DMKLDIVTYTT 466
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
+I++ KA + L +S +G++PN VTY T++ + R + E + V+M +
Sbjct: 467 MIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDG 526
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL 174
P+ T N +RA G + ++ +S G +TF ++
Sbjct: 527 PLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLV 572
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 93/208 (44%), Gaps = 1/208 (0%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
K K+ E+ E+F+ M G NT ++T L+ + ++ D A + + M + PD+
Sbjct: 368 KYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV-SDGVHPDI 426
Query: 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123
TY+IL+ + + M + ++ + VTY T+I+A +A +
Sbjct: 427 MTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCS 486
Query: 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
+ + +P+V T + F G + + + + + G P+ T+N L+ + + G
Sbjct: 487 LSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGD 546
Query: 184 FEKMSAVMEYMQKYHYSWTIVTYNIVID 211
+ +++ M+ ++ T+ +V +
Sbjct: 547 EAASAELIKEMRSCGFAGDASTFGLVTN 574
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 129/253 (50%), Gaps = 1/253 (0%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
+A +L+ M+ D + ++++L++ + D+A + E M + DC P+V TY+ L
Sbjct: 344 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI-SKDCFPNVVTYNTL 402
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
IK KA D+ L +MS +G+ NTVTY TLI + +A+ ++ +M+S+
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
PD+ T + L N+G+++T +E Q + ++P I T+NI+++ KAG E
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWD 522
Query: 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249
+ + +VTY ++ F R G ++ + LFR M+ E P T +L+RA+
Sbjct: 523 LFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHL 582
Query: 250 HAGKPEKLGSVLR 262
G ++R
Sbjct: 583 RDGDKAASAELIR 595
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 141/312 (45%), Gaps = 1/312 (0%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A L MV+ G ++ +F L+ R +A +L++ M CQPD+ TY I++
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMV-VKGCQPDLVTYGIVV 228
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
K D +LL M I P V YNT+IDA K + +M ++
Sbjct: 229 NGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIR 288
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190
P+V T N +R N G+ + I P++ TF+ L+D++ K G + +
Sbjct: 289 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 348
Query: 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250
+ M K I TY+ +I+ F L + +++F LM S+ P+ VT +L++ +
Sbjct: 349 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK 408
Query: 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVT 310
A + ++ + R + ++ +TV + L+ + + + + V + M G PD +T
Sbjct: 409 AKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMT 468
Query: 311 YRTMVRAYSTNG 322
Y ++ NG
Sbjct: 469 YSILLDGLCNNG 480
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 148/330 (44%), Gaps = 1/330 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+ A LF MV + F+ LLSA + FD SL E M+N ++ TYSI
Sbjct: 63 DDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNL-GISHNLYTYSI 121
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LI + A+L+ M G P+ VT N+L++ + ++ + +M+
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
+PD +T N + + ++ G QP + T+ I+++ K G +
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
++++ M++ +V YN +IDA ++ LF M ++ I+P+ VT SL+R
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
+ G+ +L + I + V F+ L+DA+ + E + + + M +R PD
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 361
Query: 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338
TY +++ + + + AK +L+ D
Sbjct: 362 FTYSSLINGFCMHDRLDEAKHMFELMISKD 391
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 140/321 (43%), Gaps = 38/321 (11%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHM-KNTPDCQPDVNTYSIL 69
A L M++ + N +F+AL+ A+ + G +A L + M K + D PD+ TYS L
Sbjct: 310 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PDIFTYSSL 367
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
I D+ + + M ++ PN VTYNTLI + +AK E +M
Sbjct: 368 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
+ T + F + + D + +++ S G+ P I T++ILLD G E
Sbjct: 428 VGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALV 487
Query: 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249
V EY+Q+ I TYNI+I+ +AG ++ LF + + +KP+ VT +++ +
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFC 547
Query: 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309
G E+ ++ R EMK + G PD
Sbjct: 548 RKGLKEEADALFR----------------------------EMK-------EEGPLPDSG 572
Query: 310 TYRTMVRAYSTNGMKNHAKEF 330
TY T++RA+ +G K + E
Sbjct: 573 TYNTLIRAHLRDGDKAASAEL 593
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 36/179 (20%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRS----------------------- 40
K K+ ++ ELF+ M G NT ++T L+ + ++
Sbjct: 408 KAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIM 467
Query: 41 ------------GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSD 88
G + A + E+++ + +PD+ TY+I+I+ KA + L
Sbjct: 468 TYSILLDGLCNNGKVETALVVFEYLQRSK-MEPDIYTYNIMIEGMCKAGKVEDGWDLFCS 526
Query: 89 MSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG 147
+S +G++PN VTY T++ + R + E + +M E PD T N +RA G
Sbjct: 527 LSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDG 585
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 3 GKCK--QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK + E +LF ++ +G N ++T ++S + R GL ++A +L MK
Sbjct: 510 GMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPL- 568
Query: 61 PDVNTYSILIKSCLK 75
PD TY+ LI++ L+
Sbjct: 569 PDSGTYNTLIRAHLR 583
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/360 (25%), Positives = 148/360 (41%), Gaps = 39/360 (10%)
Query: 1 MLGKCK--QPEKAHELFQAMVDE-GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP 57
+LG C+ A ++F M E C N+ S++ L+ G ++AF L + M
Sbjct: 237 LLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQM-GEK 295
Query: 58 DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEM 117
CQP TY++LIK+ DK L +M +G +PN TY LID R E
Sbjct: 296 GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEA 355
Query: 118 ELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177
KM+ + P V T N + + G++ + + +P++ TFN L++
Sbjct: 356 NGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEG 415
Query: 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237
+ G K +++ M S IV+YN++ID R G + L M I+P
Sbjct: 416 LCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPD 475
Query: 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR----------LK 287
C+T +++ A+ GK + + L + I LD V L+D + L+
Sbjct: 476 CLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILE 535
Query: 288 CFAEMK--------GVLEVMQQRGCK-----------------PDKVTYRTMVRAYSTNG 322
+M+ V+ M +GCK P VTY T+V +G
Sbjct: 536 TLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSG 595
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 143/337 (42%), Gaps = 4/337 (1%)
Query: 3 GKCK--QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G C+ + E+A+ + + MV + + ++ AL++ Y + G AF LL M+ C+
Sbjct: 345 GLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA-CK 403
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P+V T++ L++ + K LL M G+ P+ V+YN LID R
Sbjct: 404 PNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKL 463
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
L M D EPD T + AF G+ D GI T L+D K
Sbjct: 464 LSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCK 523
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
G ++E + K T + N+++D + +K+ + + + PS VT
Sbjct: 524 VGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVT 583
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
+LV +G +L + S + + + +++ + E + +L MQ
Sbjct: 584 YTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQ 643
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKE-FQDLVEK 336
G P+ VTY MV+ Y NG + A E + +VE+
Sbjct: 644 DSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVER 680
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 134/326 (41%), Gaps = 36/326 (11%)
Query: 10 KAHELFQA-MVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+A E+F + ++ G ++ T+LL + R A + + M C P+ +YSI
Sbjct: 212 EAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSI 271
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LI + ++ L M +G +P+T TY LI
Sbjct: 272 LIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLI----------------------- 308
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
+A + G ID +++ G +P+++T+ +L+D + G E+ +
Sbjct: 309 ------------KALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEAN 356
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
V M K +++TYN +I+ + + G + L +M KP+ T L+
Sbjct: 357 GVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
GKP K +L+ + ++ + D V +N L+D R +L M +PD
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDC 476
Query: 309 VTYRTMVRAYSTNGMKNHAKEFQDLV 334
+T+ ++ A+ G + A F L+
Sbjct: 477 LTFTAIINAFCKQGKADVASAFLGLM 502
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 122/285 (42%), Gaps = 3/285 (1%)
Query: 1 MLGKCK--QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPD 58
M G C+ +P KA L + M+D G + S+ L+ R G + A+ LL M N D
Sbjct: 413 MEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSM-NCFD 471
Query: 59 CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME 118
+PD T++ +I + K D A L M +GI + VT TLID + +
Sbjct: 472 IEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDAL 531
Query: 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178
L ++ ++N L ++ K G+ PS+ T+ L+D
Sbjct: 532 FILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGL 591
Query: 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238
++G ++E M+ + Y I+I+ + G +++ E L M+ + P+
Sbjct: 592 IRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNH 651
Query: 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283
VT +V+ Y + GK ++ +R + L+ ++ L+ +
Sbjct: 652 VTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGF 696
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 146/339 (43%), Gaps = 9/339 (2%)
Query: 3 GKCKQPE--KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK+ + A L M AN F ++ + + + A L M+ T +
Sbjct: 232 GLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEME-TKGIR 290
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P+V TY+ LI + LLS+M + I PN VT+N LIDA+ + E E
Sbjct: 291 PNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKL 350
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+M+ +PD T N + F ++D ++ ++ S P+I T+N L++ + K
Sbjct: 351 HEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCK 410
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
E + M + VTY +I F +AGD + +F+ M S R+ +T
Sbjct: 411 CKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMT 470
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
L+ GK + + +++ S++ L+ +N +++ + E ++
Sbjct: 471 YSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGE---AWDLFC 527
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339
KPD VTY TM+ + K +E DL KM E
Sbjct: 528 SLSIKPDVVTYNTMISGLCS---KRLLQEADDLFRKMKE 563
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 146/329 (44%), Gaps = 2/329 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
+ A +LF MV + F LLSA + F+ SL E M+ T D+ TYSI
Sbjct: 65 DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQ-TLGISHDLYTYSI 123
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
I + A+L+ M G P+ VT ++L++ Y +K ++ + +M+
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
+PD +T + + ++ G QP + T+ +++ K G +
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
++ M+ +V +N +ID+ + ++ LF M ++ I+P+ VT SL+
Sbjct: 244 NLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCL 303
Query: 249 GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308
+ G+ +L + I + V FN L+DA+ + E + + E M QR PD
Sbjct: 304 CNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDT 363
Query: 309 VTYRTMVRAYSTNGMKNHAKE-FQDLVEK 336
+TY ++ + + + AK+ F+ +V K
Sbjct: 364 ITYNLLINGFCMHNRLDEAKQMFKFMVSK 392
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 33/171 (19%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
KCK+ E ELF+ M G NT ++T ++ + ++G D A + + M + D+
Sbjct: 410 KCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNR-VPTDI 468
Query: 64 NTYSILIKSC----------------------LKAFAFD----------KVQALLSDMST 91
TYSIL+ L F ++ KV +
Sbjct: 469 MTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCS 528
Query: 92 QGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142
I+P+ VTYNT+I ++ E + KM + P+ T N +RA
Sbjct: 529 LSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRA 579
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 146/330 (44%), Gaps = 5/330 (1%)
Query: 3 GKCKQPE--KAHELFQAMVDEGCDANTQSFTALLSAYGRSGL-FDKAFSLLEHMKNTPDC 59
G CK+ + + L + + G + ++ A R G D A S+ + N DC
Sbjct: 284 GFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIAN--DC 341
Query: 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119
+PDV TY+ILI K + L + S +G+ PN ++Y LI AY ++K +
Sbjct: 342 KPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASK 401
Query: 120 TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179
L++M C+PD+ T + SG +D K G+ P +N+L+
Sbjct: 402 LLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLC 461
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K G F + M + Y +ID F R+GD + +F L + +K V
Sbjct: 462 KTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVV 521
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
++++ + +G ++ + + ++ ++ D ++ ++D Y + + A + M
Sbjct: 522 HHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYM 581
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKE 329
++ CKP+ VTY +++ + G A+E
Sbjct: 582 EKNKCKPNVVTYTSLINGFCCQGDFKMAEE 611
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 140/344 (40%), Gaps = 16/344 (4%)
Query: 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV 63
K K+ + A +L M + GC + ++ L+ SG D A ++ + + PD
Sbjct: 392 KSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDR-GVSPDA 450
Query: 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK 123
Y++L+ K F + L S+M + I P+ Y TLID + R+ F E
Sbjct: 451 AIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSL 510
Query: 124 MLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183
+ + + DV N ++ F SG +D C + + P T++ ++D Y K
Sbjct: 511 SVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQD 570
Query: 184 FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243
+ YM+K +VTY +I+ F GD K E F+ M+ + P+ VT +
Sbjct: 571 MATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTT 630
Query: 244 LVRAYG-HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL---KCFAEMKG----- 294
L+R+ + EK + + + + V FNCL+ + + K AE G
Sbjct: 631 LIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQ 690
Query: 295 ------VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD 332
M+ G Y + + +GM A FQD
Sbjct: 691 SSLFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMFQD 734
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 139/321 (43%), Gaps = 5/321 (1%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E +L + +GC N + ++ Y + G + A+ + + +K P + T+
Sbjct: 222 EVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELK-LKGFMPTLETFGT 280
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
+I K F LLS++ +G+R + N +IDA R + ++ +++ D
Sbjct: 281 MINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIAND 340
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
C+PDV T N + G+ + ++ G+ P+ ++ L+ +Y K+ ++ S
Sbjct: 341 CKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIAS 400
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
++ M + IVTY I+I +G + + + + P L+
Sbjct: 401 KLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGL 460
Query: 249 GHAGK--PEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306
G+ P KL + + + +I+ D + L+D + R F E + V + ++G K
Sbjct: 461 CKTGRFLPAKL--LFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKV 518
Query: 307 DKVTYRTMVRAYSTNGMKNHA 327
D V + M++ + +GM + A
Sbjct: 519 DVVHHNAMIKGFCRSGMLDEA 539
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/332 (20%), Positives = 138/332 (41%), Gaps = 10/332 (3%)
Query: 1 MLGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
+L + + + ++ + +E ++ + +L AY SG KA + +++ D
Sbjct: 108 LLARYRIFNEIEDVLGNLRNENVKLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSV 167
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PDV + L+ +K+ + + +M +G + Y+T I G M E ++
Sbjct: 168 PDVIACNSLLSLLVKSRRLGDARKVYDEMCDRG--DSVDNYSTCILVKG---MCNEGKVE 222
Query: 121 LVKMLSE-----DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175
+ + L E C P++ N + + G I+ +++ + G P++ TF ++
Sbjct: 223 VGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMI 282
Query: 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK 235
+ + K G F ++ +++ ++ N +IDA R G + + K
Sbjct: 283 NGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCK 342
Query: 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGV 295
P T L+ GK E L ++ + + + L+ AY + K + +
Sbjct: 343 PDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKL 402
Query: 296 LEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327
L M +RGCKPD VTY ++ +G + A
Sbjct: 403 LLQMAERGCKPDIVTYGILIHGLVVSGHMDDA 434
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/261 (19%), Positives = 106/261 (40%), Gaps = 5/261 (1%)
Query: 79 FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE-MELTLVKMLSEDCEPDVWTMN 137
F++++ +L ++ + ++ + ++ AY + ++ +E+ + D PDV N
Sbjct: 115 FNEIEDVLGNLRNENVKLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVPDVIACN 174
Query: 138 CTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFN--ILLDSYGKAGHFEKMSAVMEYMQ 195
L S ++ K Y++ G S++ ++ IL+ G E ++E
Sbjct: 175 SLLSLLVKSRRLGDARKVYDEMCDRG--DSVDNYSTCILVKGMCNEGKVEVGRKLIEGRW 232
Query: 196 KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255
IV YN +I + + GD++ +F+ ++ + P+ T +++ + G
Sbjct: 233 GKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFV 292
Query: 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV 315
+L + + + F N ++DA R + + + CKPD TY ++
Sbjct: 293 ASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILI 352
Query: 316 RAYSTNGMKNHAKEFQDLVEK 336
G K A F D K
Sbjct: 353 NRLCKEGKKEVAVGFLDEASK 373
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 153/326 (46%), Gaps = 11/326 (3%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
E H L + MV +G + + T L+ + KA ++E ++ QPDV Y+
Sbjct: 107 ESLH-LLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG--QPDVFAYNA 163
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY-GRAKMFAEMELTLVKMLSE 127
LI K D +L M ++ P+TVTYN +I + R K+ +++ L ++LS+
Sbjct: 164 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV-LNQLLSD 222
Query: 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKM 187
+C+P V T + A G +D K ++ S G++P + T+N ++ K G ++
Sbjct: 223 NCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRA 282
Query: 188 SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247
++ ++ +++YNI++ A G ++ E L M SE+ P+ VT L+
Sbjct: 283 FEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITT 342
Query: 248 YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY---GRLKCFAEMKGVLEVMQQRGC 304
GK E+ ++L+ + + D ++ L+ A+ GRL E LE M GC
Sbjct: 343 LCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF---LETMISDGC 399
Query: 305 KPDKVTYRTMVRAYSTNGMKNHAKEF 330
PD V Y T++ NG + A E
Sbjct: 400 LPDIVNYNTVLATLCKNGKADQALEI 425
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 156/331 (47%), Gaps = 3/331 (0%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
++A +L M+ G + ++ ++ + G+ D+AF ++ +++ C+PDV +Y+I
Sbjct: 245 DEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLE-LKGCEPDVISYNI 303
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
L+++ L +++ + L++ M ++ PN VTY+ LI R E + L+K++ E
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEE-AMNLLKLMKEK 362
Query: 129 -CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKM 187
PD ++ + + AF G++D + E S G P I +N +L + K G ++
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422
Query: 188 SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247
+ + + S +YN + A +GD + ++ M S I P +T S++
Sbjct: 423 LEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISC 482
Query: 248 YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307
G ++ +L + + + V +N ++ + + + VLE M GC+P+
Sbjct: 483 LCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPN 542
Query: 308 KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338
+ TY ++ G + A E + + ++D
Sbjct: 543 ETTYTVLIEGIGFAGYRAEAMELANDLVRID 573
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 123/287 (42%), Gaps = 8/287 (2%)
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
D I +SC + + LL M +G P+ + LI + + + + +
Sbjct: 89 DTQMLKIFHRSCRSGNYIESLH-LLETMVRKGYNPDVILCTKLIKGFFTLRNIPK-AVRV 146
Query: 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181
+++L + +PDV+ N + F +ID + ++ +S P T+NI++ S
Sbjct: 147 MEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSR 206
Query: 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241
G + V+ + + T++TY I+I+A G + + L M S +KP T
Sbjct: 207 GKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTY 266
Query: 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301
+++R G ++ ++R ++ D + +N L+ A + E + ++ M
Sbjct: 267 NTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFS 326
Query: 302 RGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD 348
C P+ VTY ++ +G +E +L++ M E L PD
Sbjct: 327 EKCDPNVVTYSILITTLCRDG---KIEEAMNLLKLMKEKGLT---PD 367
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFS-LLEHMKNTPDCQ 60
L K + ++A E+F + + GC N+ S+ + SA SG +A +LE M N D
Sbjct: 413 LCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGID-- 470
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
PD TY+ +I + D+ LL DM + P+ VTYN ++ + +A +
Sbjct: 471 PDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINV 530
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSG 147
L M+ C P+ T + G +G
Sbjct: 531 LESMVGNGCRPNETTYTVLIEGIGFAG 557
>sp|Q9LMY5|PPR41_ARATH Putative pentatricopeptide repeat-containing protein At1g13630
OS=Arabidopsis thaliana GN=At1g13630 PE=2 SV=3
Length = 826
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 146/330 (44%), Gaps = 14/330 (4%)
Query: 14 LFQAMVDEGCDANTQ-SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS 72
L + M+ G + N+ + +LS ++G D+A SL MK PD+ YSI+I
Sbjct: 391 LLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMK-ADGLSPDLVAYSIVIHG 449
Query: 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD 132
K FD L +M + I PN+ T+ L+ + M E L ++S D
Sbjct: 450 LCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLD 509
Query: 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVME 192
+ N + + SG I+ + ++ GI PS+ TFN L+ Y K + + +++
Sbjct: 510 IVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILD 569
Query: 193 YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG 252
++ Y + ++V+Y ++DA+ G+ K ++ L R M++E I P+ VT + +
Sbjct: 570 VIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGW 629
Query: 253 KPEKLGSVLRF------------IDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300
K E VLR +++ I D + +N ++ R+K + LE+M+
Sbjct: 630 KHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMK 689
Query: 301 QRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
R TY ++ + G A F
Sbjct: 690 SRNLDASSATYNILIDSLCVYGYIRKADSF 719
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 143/336 (42%), Gaps = 4/336 (1%)
Query: 3 GKCKQPEKAHELFQAMVDEGCD--ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G C+Q + + E D + SF +++S Y + G D A S +
Sbjct: 238 GLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKC-GLV 296
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P V +++ILI + + L SDM+ G+ P++VTYN L + M +
Sbjct: 297 PSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEV 356
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNILLDSYG 179
+ ML + PDV T L G ID + S G + SI +++L
Sbjct: 357 IRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLC 416
Query: 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239
K G ++ ++ M+ S +V Y+IVI + G +L+ M +RI P+
Sbjct: 417 KTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSR 476
Query: 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299
T +L+ G + S+L + +S LD V +N ++D Y + C E + +V+
Sbjct: 477 THGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVV 536
Query: 300 QQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335
+ G P T+ +++ Y A++ D+++
Sbjct: 537 IETGITPSVATFNSLIYGYCKTQNIAEARKILDVIK 572
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/331 (19%), Positives = 138/331 (41%), Gaps = 15/331 (4%)
Query: 1 MLGKCKQPE--KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPD 58
+LG C++ +A L +++ G + + ++ Y +SG ++A L + + T
Sbjct: 482 LLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIET-G 540
Query: 59 CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME 118
P V T++ LI K + + +L + G+ P+ V+Y TL+DAY ++
Sbjct: 541 ITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSID 600
Query: 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT-----MEKCYEK-------FQSAGIQP 166
+M +E P T + + + + E+ +EK +S GI P
Sbjct: 601 ELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPP 660
Query: 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF 226
T+N ++ + H +E M+ + + TYNI+ID+ G +++ +
Sbjct: 661 DQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFI 720
Query: 227 RLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL 286
++ + + S +L++A+ G PE + + + + ++ +++ R
Sbjct: 721 YSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRR 780
Query: 287 KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRA 317
E K +M +G PD M+++
Sbjct: 781 HLVNESKFFFCLMLSQGISPDLDICEVMIKS 811
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 11/227 (4%)
Query: 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156
N TY+T++D R + + L L +D P V + N + + G +D + +
Sbjct: 228 NEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFF 287
Query: 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216
G+ PS+ + NIL++ G + + M K+ VTYNI+ F
Sbjct: 288 CTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLL 347
Query: 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL------RFIDNSDIM 270
G + + R M + + P +T L+ G + +G VL R + + I+
Sbjct: 348 GMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNID-MGLVLLKDMLSRGFELNSII 406
Query: 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRA 317
+V + L GR+ E + M+ G PD V Y ++
Sbjct: 407 PCSVMLSGLCKT-GRID---EALSLFNQMKADGLSPDLVAYSIVIHG 449
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 138/327 (42%), Gaps = 11/327 (3%)
Query: 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
EK+ L Q M G ++ +L Y + G F A LL+HMK + DV TY++
Sbjct: 210 EKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMK-SKGVDADVCTYNM 268
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128
LI ++ K LL DM + I PN VTYNTLI+ + L +MLS
Sbjct: 269 LIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFG 328
Query: 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188
P+ T N + + G K + ++ G+ PS ++ +LLD K F+
Sbjct: 329 LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLAR 388
Query: 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248
M++ +TY +ID + G L + L M + I P VT +L+ +
Sbjct: 389 GFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGF 448
Query: 249 GHAGK----PEKLGSVLRF-IDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303
G+ E + + R + + I+ T+ +NC R+ C E + E M G
Sbjct: 449 CKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCC-----RMGCLKEAIRIYEAMILEG 503
Query: 304 CKPDKVTYRTMVRAYSTNGMKNHAKEF 330
D T+ +V + G A+EF
Sbjct: 504 HTRDHFTFNVLVTSLCKAGKVAEAEEF 530
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 139/330 (42%), Gaps = 18/330 (5%)
Query: 3 GKCKQP--EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ 60
G CK ++A L M +G D + +++AL++ + + G F A ++ +
Sbjct: 412 GLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRV-GLS 470
Query: 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120
P+ YS LI +C + + + M +G + T+N L+ + +A AE E
Sbjct: 471 PNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEF 530
Query: 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK 180
+ M S+ P+ + +C + +GNSG+ +++ G P+ T+ LL K
Sbjct: 531 MRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCK 590
Query: 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT 240
GH + ++ + + V YN ++ A ++G+L + LF M I P T
Sbjct: 591 GGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYT 650
Query: 241 LCSLVRAYGHAGKPEKLGSVLRFI------DNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294
SL+ GK +V+ + +++ + V + C VD G K G
Sbjct: 651 YTSLISGLCRKGK-----TVIAILFAKEAEARGNVLPNKVMYTCFVD--GMFKAGQWKAG 703
Query: 295 VL--EVMQQRGCKPDKVTYRTMVRAYSTNG 322
+ E M G PD VT M+ YS G
Sbjct: 704 IYFREQMDNLGHTPDIVTTNAMIDGYSRMG 733
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 119/272 (43%)
Query: 59 CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME 118
C + + Y ILI+ L+ + M G P+ T N ++ + ++ +
Sbjct: 119 CNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVW 178
Query: 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178
L +ML PDV T N + G + +K + +G P+I T+N +L Y
Sbjct: 179 SFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWY 238
Query: 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238
K G F+ ++++M+ + TYN++I R+ + + L R MR I P+
Sbjct: 239 CKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNE 298
Query: 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298
VT +L+ + + GK +L + + + + V FN L+D + F E + +
Sbjct: 299 VTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYM 358
Query: 299 MQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330
M+ +G P +V+Y ++ N + A+ F
Sbjct: 359 MEAKGLTPSEVSYGVLLDGLCKNAEFDLARGF 390
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/347 (21%), Positives = 138/347 (39%), Gaps = 36/347 (10%)
Query: 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILI 70
A +L M+ G N +F AL+ + G F +A + +M P +Y +L+
Sbjct: 317 ASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF-YMMEAKGLTPSEVSYGVLL 375
Query: 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130
K FD + M G+ +TY +ID + E + L +M + +
Sbjct: 376 DGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGID 435
Query: 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190
PD+ T + + F G+ T ++ + G+ P+ ++ L+ + + G ++ +
Sbjct: 436 PDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRI 495
Query: 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250
E M ++ T+N+++ + +AG + + E R M S+ I P+ V+ L+ YG+
Sbjct: 496 YEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGN 555
Query: 251 AGKPEKLGSV-----------------------------------LRFIDNSDIMLDTVF 275
+G+ K SV L+ + +DTV
Sbjct: 556 SGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVM 615
Query: 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322
+N L+ A + A+ + M QR PD TY +++ G
Sbjct: 616 YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKG 662
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 138/361 (38%), Gaps = 47/361 (13%)
Query: 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP 61
L K + +A E + M +G NT SF L++ YG SG KAFS+ + M P
Sbjct: 518 LCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGH-HP 576
Query: 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121
TY L+K K + + L + +TV YNTL+ A ++ A+
Sbjct: 577 TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 636
Query: 122 VKMLSEDCEPDVWTMNCTL-------------------RAFGNSGQIDTMEKCY------ 156
+M+ PD +T + A GN M C+
Sbjct: 637 GEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFK 696
Query: 157 -----------EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVT 205
E+ + G P I T N ++D Y + G EK + ++ M + + T
Sbjct: 697 AGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTT 756
Query: 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265
YNI++ + + D+ L+R + I P +T SLV + E +L+
Sbjct: 757 YNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFI 816
Query: 266 NSDIMLDTVFFNCLVDAYGRLKCFAEMK-----GVLEVMQQRGCKPDKVTYRTMVRAYST 320
+ +D FN L+ KC A + +++VM G DK T MV +
Sbjct: 817 CRGVEVDRYTFNMLIS-----KCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 871
Query: 321 N 321
N
Sbjct: 872 N 872
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 125/305 (40%), Gaps = 1/305 (0%)
Query: 23 CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82
C++N + L+ Y R G+ + + M P V T + ++ S +K+ V
Sbjct: 119 CNSNPSVYDILIRVYLREGMIQDSLEIFRLM-GLYGFNPSVYTCNAILGSVVKSGEDVSV 177
Query: 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142
+ L +M + I P+ T+N LI+ F + + KM P + T N L
Sbjct: 178 WSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHW 237
Query: 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT 202
+ G+ + + +S G+ + T+N+L+ ++ K ++ M+K
Sbjct: 238 YCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPN 297
Query: 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR 262
VTYN +I+ F G + L M S + P+ VT +L+ + G ++ +
Sbjct: 298 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFY 357
Query: 263 FIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322
++ + V + L+D + F +G M++ G ++TY M+ NG
Sbjct: 358 MMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNG 417
Query: 323 MKNHA 327
+ A
Sbjct: 418 FLDEA 422
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 131/315 (41%), Gaps = 4/315 (1%)
Query: 10 KAHELFQAMVDE-GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI 68
KA F+ +D G + + A++ Y R G +K LL M N + P++ TY+I
Sbjct: 701 KAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGN-QNGGPNLTTYNI 759
Query: 69 LIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVK-MLSE 127
L+ K L + GI P+ +T ++L+ + M E+ L ++K +
Sbjct: 760 LLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNML-EIGLKILKAFICR 818
Query: 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKM 187
E D +T N + +G+I+ + S GI +T + ++ + F++
Sbjct: 819 GVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQES 878
Query: 188 SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247
V+ M K S Y +I+ R GD+K + M + +I P V ++VRA
Sbjct: 879 RMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRA 938
Query: 248 YGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307
GK ++ +LRF+ ++ F L+ + E + VM G K D
Sbjct: 939 LAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLD 998
Query: 308 KVTYRTMVRAYSTNG 322
V+Y ++ G
Sbjct: 999 LVSYNVLITGLCAKG 1013
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 105/250 (42%), Gaps = 5/250 (2%)
Query: 1 MLGKCKQP--EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPD 58
+LG C+ E ++ +A + G + + +F L+S +G + AF L++ M +
Sbjct: 796 VLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVM-TSLG 854
Query: 59 CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME 118
D +T ++ + F + + +L +MS QGI P + Y LI+ R
Sbjct: 855 ISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAF 914
Query: 119 LTLVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177
+ +M++ C P+V + +RA G+ D + P+I +F L+
Sbjct: 915 VVKEEMIAHKICPPNV-AESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHL 973
Query: 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237
K G+ + + M +V+YN++I GD+ L+ M+ + +
Sbjct: 974 CCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLAN 1033
Query: 238 CVTLCSLVRA 247
T +L+R
Sbjct: 1034 ATTYKALIRG 1043
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 121/328 (36%)
Query: 10 KAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69
KA LF MV ++ ++T+L+S R G A + + + P+ Y+
Sbjct: 631 KAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCF 690
Query: 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129
+ KA + M G P+ VT N +ID Y R + L +M +++
Sbjct: 691 VDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNG 750
Query: 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189
P++ T N L + + T Y GI P T + L+ ++ E
Sbjct: 751 GPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLK 810
Query: 190 VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249
+++ T+N++I G++ L ++M S I T ++V
Sbjct: 811 ILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLN 870
Query: 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309
+ ++ VL + I ++ + L++ R+ V E M P V
Sbjct: 871 RNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNV 930
Query: 310 TYRTMVRAYSTNGMKNHAKEFQDLVEKM 337
MVRA + G + A + KM
Sbjct: 931 AESAMVRALAKCGKADEATLLLRFMLKM 958
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%)
Query: 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264
Y+I+I + R G ++ +FRLM PS T +++ + +G+ + S L+ +
Sbjct: 125 VYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEM 184
Query: 265 DNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMK 324
I D FN L++ F + +++ M++ G P VTY T++ Y G
Sbjct: 185 LKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRF 244
Query: 325 NHAKEFQD 332
A E D
Sbjct: 245 KAAIELLD 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,511,754
Number of Sequences: 539616
Number of extensions: 4821095
Number of successful extensions: 18177
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 10588
Number of HSP's gapped (non-prelim): 2743
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)