Query 018876
Match_columns 349
No_of_seqs 694 out of 1374
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 04:46:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.8E-59 1.3E-63 419.2 43.2 335 2-337 447-783 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.5E-58 1.8E-62 411.6 42.5 335 2-337 380-748 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 9.5E-52 2.1E-56 369.3 35.1 317 3-332 134-486 (697)
4 PLN03081 pentatricopeptide (PP 100.0 5.1E-52 1.1E-56 371.0 32.7 323 2-339 168-525 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.1E-50 2.3E-55 370.6 33.9 218 2-228 232-449 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 9.9E-50 2.2E-54 364.3 35.8 324 2-334 263-651 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-24 3.4E-29 202.2 39.3 320 4-335 579-898 (899)
8 PRK11788 tetratricopeptide rep 99.9 2.8E-24 6E-29 181.2 32.5 295 34-336 42-346 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2E-23 4.4E-28 194.8 40.1 324 4-337 443-799 (899)
10 PRK11788 tetratricopeptide rep 99.9 3.8E-23 8.3E-28 174.4 36.7 309 3-324 46-363 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.8E-21 3.9E-26 172.2 39.1 328 3-341 53-385 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 6.4E-20 1.4E-24 162.7 40.1 330 2-340 137-574 (615)
13 PRK15174 Vi polysaccharide exp 99.9 1.7E-19 3.8E-24 159.6 38.1 292 3-303 87-382 (656)
14 PRK11447 cellulose synthase su 99.9 2.3E-18 5E-23 162.5 39.3 328 3-337 280-700 (1157)
15 PRK11447 cellulose synthase su 99.9 6.8E-18 1.5E-22 159.3 39.2 321 3-336 362-739 (1157)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.2E-17 4.8E-22 146.7 37.7 304 29-340 129-499 (615)
17 KOG4626 O-linked N-acetylgluco 99.9 8.9E-19 1.9E-23 144.0 24.4 325 3-339 127-487 (966)
18 PRK10049 pgaA outer membrane p 99.8 7.9E-17 1.7E-21 145.8 38.3 327 3-338 60-457 (765)
19 PRK10049 pgaA outer membrane p 99.8 1.4E-16 2.9E-21 144.3 37.6 330 3-340 26-425 (765)
20 KOG4626 O-linked N-acetylgluco 99.8 1.4E-17 3E-22 137.2 27.7 303 4-318 196-500 (966)
21 PRK14574 hmsH outer membrane p 99.8 5.6E-15 1.2E-19 132.0 39.0 169 2-178 44-213 (822)
22 PRK09782 bacteriophage N4 rece 99.8 3.7E-15 8E-20 135.8 36.8 267 62-340 476-743 (987)
23 PRK14574 hmsH outer membrane p 99.8 7.9E-15 1.7E-19 131.0 36.9 328 4-338 114-514 (822)
24 PRK10747 putative protoheme IX 99.8 4.9E-15 1.1E-19 124.2 33.4 287 39-339 96-392 (398)
25 KOG4422 Uncharacterized conser 99.8 6.7E-15 1.4E-19 116.4 30.9 308 24-338 204-591 (625)
26 PRK09782 bacteriophage N4 rece 99.8 3.1E-14 6.7E-19 129.9 39.4 324 5-339 355-708 (987)
27 PRK10747 putative protoheme IX 99.8 8.6E-15 1.9E-19 122.7 33.0 284 5-302 97-390 (398)
28 PF13429 TPR_15: Tetratricopep 99.8 6.1E-18 1.3E-22 135.6 12.9 262 32-300 13-275 (280)
29 TIGR00540 hemY_coli hemY prote 99.8 9.4E-15 2E-19 123.2 32.5 297 31-336 86-398 (409)
30 PF13429 TPR_15: Tetratricopep 99.8 7.9E-18 1.7E-22 134.9 12.4 258 1-266 17-276 (280)
31 TIGR00540 hemY_coli hemY prote 99.8 1.8E-14 3.9E-19 121.4 33.0 291 4-301 96-398 (409)
32 KOG4422 Uncharacterized conser 99.8 3.9E-14 8.4E-19 112.2 31.1 315 4-322 127-482 (625)
33 COG2956 Predicted N-acetylgluc 99.8 6E-14 1.3E-18 107.1 31.0 292 39-341 47-348 (389)
34 COG3071 HemY Uncharacterized e 99.7 2.3E-13 5E-18 106.9 31.9 294 39-343 96-396 (400)
35 KOG2076 RNA polymerase III tra 99.7 2.1E-13 4.5E-18 117.4 33.5 325 5-335 152-510 (895)
36 COG3071 HemY Uncharacterized e 99.7 4.3E-13 9.3E-18 105.4 32.1 293 4-307 96-395 (400)
37 COG2956 Predicted N-acetylgluc 99.7 2.3E-13 5E-18 103.9 29.0 291 5-302 48-347 (389)
38 KOG1126 DNA-binding cell divis 99.7 1.7E-14 3.7E-19 120.1 24.6 289 42-343 334-626 (638)
39 KOG1126 DNA-binding cell divis 99.7 1.6E-14 3.5E-19 120.2 23.0 292 7-308 334-626 (638)
40 KOG1155 Anaphase-promoting com 99.7 1.2E-12 2.6E-17 104.8 29.3 255 76-334 240-533 (559)
41 KOG1155 Anaphase-promoting com 99.6 2.5E-12 5.4E-17 103.0 29.0 307 7-339 242-555 (559)
42 KOG2076 RNA polymerase III tra 99.6 3.9E-12 8.6E-17 109.7 31.4 303 35-342 147-483 (895)
43 KOG2003 TPR repeat-containing 99.6 4E-12 8.6E-17 101.9 28.5 313 2-322 286-708 (840)
44 KOG2002 TPR-containing nuclear 99.6 3.9E-12 8.4E-17 110.6 28.7 330 3-338 318-710 (1018)
45 PRK12370 invasion protein regu 99.6 3.6E-12 7.9E-17 111.6 27.8 249 44-303 278-536 (553)
46 KOG0547 Translocase of outer m 99.6 2.2E-11 4.9E-16 98.3 29.5 328 2-340 125-569 (606)
47 PF12569 NARP1: NMDA receptor- 99.6 2.9E-11 6.2E-16 102.8 31.7 289 2-301 14-333 (517)
48 KOG1915 Cell cycle control pro 99.6 1.1E-10 2.3E-15 94.2 32.5 324 5-338 154-537 (677)
49 KOG0495 HAT repeat protein [RN 99.6 6.5E-11 1.4E-15 99.1 31.6 327 3-339 527-882 (913)
50 TIGR02521 type_IV_pilW type IV 99.6 8.1E-12 1.8E-16 97.7 25.5 201 133-337 31-232 (234)
51 PRK12370 invasion protein regu 99.6 1.8E-11 3.9E-16 107.3 29.1 267 60-336 253-534 (553)
52 KOG4318 Bicoid mRNA stability 99.6 8.5E-13 1.8E-17 113.5 19.4 241 13-287 11-285 (1088)
53 TIGR02521 type_IV_pilW type IV 99.6 1.4E-11 3E-16 96.4 25.3 200 63-266 31-231 (234)
54 PF12569 NARP1: NMDA receptor- 99.6 1.2E-10 2.7E-15 99.0 32.1 295 33-338 10-335 (517)
55 KOG1840 Kinesin light chain [C 99.5 8.3E-12 1.8E-16 104.9 24.4 252 97-348 198-490 (508)
56 KOG1129 TPR repeat-containing 99.5 1.2E-12 2.5E-17 100.4 17.0 237 60-302 220-458 (478)
57 KOG1129 TPR repeat-containing 99.5 2.5E-12 5.4E-17 98.6 18.4 238 96-339 221-460 (478)
58 KOG2002 TPR-containing nuclear 99.5 5.1E-10 1.1E-14 97.8 33.1 240 97-339 269-527 (1018)
59 KOG2003 TPR repeat-containing 99.5 8.6E-11 1.9E-15 94.4 26.3 278 2-288 429-709 (840)
60 KOG1173 Anaphase-promoting com 99.5 1.8E-10 3.9E-15 94.9 27.9 288 25-321 242-535 (611)
61 KOG0495 HAT repeat protein [RN 99.5 8.2E-10 1.8E-14 92.7 31.9 326 4-338 491-847 (913)
62 PF13041 PPR_2: PPR repeat fam 99.5 2.3E-13 5E-18 77.4 6.4 50 271-320 1-50 (50)
63 PF13041 PPR_2: PPR repeat fam 99.5 3.4E-13 7.4E-18 76.7 6.7 50 61-110 1-50 (50)
64 KOG1915 Cell cycle control pro 99.4 6.3E-09 1.4E-13 84.3 31.4 322 5-339 86-468 (677)
65 KOG0547 Translocase of outer m 99.4 1.9E-09 4.2E-14 87.4 26.4 302 30-340 118-494 (606)
66 KOG1840 Kinesin light chain [C 99.4 5.4E-10 1.2E-14 94.1 23.8 238 63-300 199-477 (508)
67 COG3063 PilF Tfp pilus assembl 99.4 1.5E-09 3.3E-14 79.6 22.5 200 136-339 38-238 (250)
68 PRK11189 lipoprotein NlpI; Pro 99.4 2.9E-09 6.2E-14 85.9 26.2 222 39-269 38-267 (296)
69 KOG1174 Anaphase-promoting com 99.4 9.9E-09 2.1E-13 81.8 27.7 291 40-339 209-502 (564)
70 KOG1173 Anaphase-promoting com 99.4 3.1E-09 6.7E-14 87.8 25.4 272 4-284 256-533 (611)
71 PRK11189 lipoprotein NlpI; Pro 99.3 6.1E-09 1.3E-13 84.0 26.8 227 77-313 40-275 (296)
72 cd05804 StaR_like StaR_like; a 99.3 8E-08 1.7E-12 80.3 34.2 308 27-338 6-337 (355)
73 KOG1174 Anaphase-promoting com 99.3 1.6E-08 3.4E-13 80.7 27.6 278 23-312 228-509 (564)
74 KOG4162 Predicted calmodulin-b 99.3 4.3E-08 9.4E-13 84.1 31.5 333 3-340 334-786 (799)
75 COG3063 PilF Tfp pilus assembl 99.3 7.4E-09 1.6E-13 76.1 23.3 196 102-301 39-235 (250)
76 cd05804 StaR_like StaR_like; a 99.3 5.1E-08 1.1E-12 81.5 29.9 291 5-302 19-336 (355)
77 KOG1156 N-terminal acetyltrans 99.3 3.1E-07 6.8E-12 77.5 33.3 191 3-198 52-249 (700)
78 KOG3785 Uncharacterized conser 99.3 1.4E-08 3E-13 79.5 23.4 96 243-342 398-495 (557)
79 PF04733 Coatomer_E: Coatomer 99.3 5.1E-09 1.1E-13 83.3 21.5 250 36-302 10-265 (290)
80 KOG4318 Bicoid mRNA stability 99.3 5.8E-10 1.2E-14 96.6 16.8 261 49-329 12-292 (1088)
81 PF04733 Coatomer_E: Coatomer 99.2 9.6E-10 2.1E-14 87.4 16.8 253 71-339 9-267 (290)
82 KOG2376 Signal recognition par 99.2 8.2E-07 1.8E-11 74.3 31.1 50 2-52 22-71 (652)
83 KOG1156 N-terminal acetyltrans 99.2 7.5E-07 1.6E-11 75.3 31.0 328 5-342 20-439 (700)
84 KOG4340 Uncharacterized conser 99.2 8.6E-08 1.9E-12 73.4 23.2 283 4-299 22-336 (459)
85 PRK04841 transcriptional regul 99.1 9.8E-07 2.1E-11 83.3 33.9 334 5-338 387-761 (903)
86 KOG2047 mRNA splicing factor [ 99.1 1.8E-06 3.9E-11 73.2 31.0 222 112-336 361-614 (835)
87 KOG1128 Uncharacterized conser 99.1 5.5E-08 1.2E-12 83.1 21.7 226 99-345 399-624 (777)
88 KOG4340 Uncharacterized conser 99.1 1.2E-07 2.5E-12 72.7 21.1 294 28-332 11-334 (459)
89 KOG1125 TPR repeat-containing 99.1 7.6E-08 1.7E-12 80.0 20.9 253 35-295 293-564 (579)
90 PLN02789 farnesyltranstransfer 99.1 5.7E-07 1.2E-11 72.7 25.7 214 66-285 40-267 (320)
91 KOG0548 Molecular co-chaperone 99.0 5.4E-06 1.2E-10 68.8 29.1 327 3-339 13-457 (539)
92 KOG2047 mRNA splicing factor [ 99.0 9.6E-06 2.1E-10 68.9 31.2 152 4-162 114-277 (835)
93 KOG1070 rRNA processing protei 99.0 9.9E-07 2.1E-11 80.8 26.6 206 26-235 1457-1666(1710)
94 KOG1125 TPR repeat-containing 99.0 2.3E-07 5E-12 77.3 20.8 254 71-330 293-564 (579)
95 KOG0624 dsRNA-activated protei 99.0 5.1E-06 1.1E-10 65.2 27.9 305 26-340 37-373 (504)
96 PLN02789 farnesyltranstransfer 99.0 2.6E-06 5.7E-11 68.9 26.4 215 29-250 39-267 (320)
97 KOG1070 rRNA processing protei 99.0 1.5E-06 3.2E-11 79.8 26.8 250 86-340 1447-1703(1710)
98 KOG4162 Predicted calmodulin-b 99.0 2.3E-06 5.1E-11 73.9 25.9 285 9-302 461-783 (799)
99 KOG0624 dsRNA-activated protei 99.0 8.6E-06 1.9E-10 64.0 28.0 288 4-303 50-371 (504)
100 KOG3785 Uncharacterized conser 98.9 2.8E-06 6.1E-11 66.9 23.1 293 7-311 166-497 (557)
101 KOG1128 Uncharacterized conser 98.9 4.7E-07 1E-11 77.6 18.8 219 25-265 396-614 (777)
102 PF12854 PPR_1: PPR repeat 98.9 3.3E-09 7.1E-14 54.2 3.7 32 268-299 2-33 (34)
103 TIGR03302 OM_YfiO outer membra 98.9 1.1E-06 2.4E-11 68.8 19.8 187 26-232 32-232 (235)
104 PRK04841 transcriptional regul 98.9 2.3E-05 4.9E-10 74.2 31.8 299 4-303 421-761 (903)
105 PRK10370 formate-dependent nit 98.9 2E-06 4.3E-11 64.8 19.7 120 111-233 52-174 (198)
106 PF12854 PPR_1: PPR repeat 98.8 5E-09 1.1E-13 53.5 3.8 32 22-53 2-33 (34)
107 COG5010 TadD Flp pilus assembl 98.8 2.6E-06 5.5E-11 64.3 19.4 160 137-300 70-229 (257)
108 TIGR03302 OM_YfiO outer membra 98.8 2.2E-06 4.8E-11 67.1 20.0 187 130-337 30-232 (235)
109 COG5010 TadD Flp pilus assembl 98.8 3.9E-06 8.5E-11 63.4 19.9 159 102-264 70-228 (257)
110 KOG2376 Signal recognition par 98.8 4.8E-05 1E-09 64.2 31.9 124 204-331 377-514 (652)
111 PRK10370 formate-dependent nit 98.8 5.5E-07 1.2E-11 67.8 15.8 132 40-177 52-186 (198)
112 KOG1914 mRNA cleavage and poly 98.8 4.8E-05 1.1E-09 63.5 31.6 132 203-336 366-500 (656)
113 KOG3617 WD40 and TPR repeat-co 98.8 2.1E-05 4.5E-10 69.0 26.3 302 2-339 738-1111(1416)
114 KOG3081 Vesicle coat complex C 98.8 1E-05 2.2E-10 61.3 21.5 251 34-302 15-271 (299)
115 PRK14720 transcript cleavage f 98.8 1.3E-05 2.9E-10 72.5 26.0 167 26-231 30-197 (906)
116 KOG0548 Molecular co-chaperone 98.8 3.3E-05 7.1E-10 64.3 25.4 297 35-340 10-424 (539)
117 PRK15359 type III secretion sy 98.7 1.7E-06 3.7E-11 61.6 15.3 108 13-127 14-121 (144)
118 KOG3081 Vesicle coat complex C 98.7 4.3E-05 9.3E-10 58.0 24.9 105 213-322 147-255 (299)
119 PRK15179 Vi polysaccharide bio 98.7 3.5E-05 7.6E-10 69.0 26.3 146 130-279 83-228 (694)
120 KOG0985 Vesicle coat protein c 98.7 0.00012 2.6E-09 65.9 27.9 277 13-327 968-1268(1666)
121 PRK15359 type III secretion sy 98.7 3.4E-06 7.3E-11 60.1 15.7 87 177-265 33-119 (144)
122 PRK15179 Vi polysaccharide bio 98.7 1.6E-05 3.4E-10 71.2 22.9 148 164-315 82-229 (694)
123 KOG3060 Uncharacterized conser 98.7 5.4E-05 1.2E-09 57.1 22.0 188 77-268 26-221 (289)
124 PRK14720 transcript cleavage f 98.7 8.3E-06 1.8E-10 73.8 21.2 251 60-339 28-285 (906)
125 KOG0985 Vesicle coat protein c 98.7 0.00011 2.5E-09 66.0 26.7 261 41-340 1089-1373(1666)
126 COG4783 Putative Zn-dependent 98.6 0.00016 3.5E-09 59.8 25.1 121 177-301 315-436 (484)
127 KOG3060 Uncharacterized conser 98.6 8.8E-05 1.9E-09 56.0 21.3 190 40-233 25-221 (289)
128 TIGR02552 LcrH_SycD type III s 98.6 4.1E-06 9E-11 59.2 13.6 110 14-127 5-114 (135)
129 COG4783 Putative Zn-dependent 98.6 0.00014 3E-09 60.1 23.4 119 143-264 316-434 (484)
130 KOG3617 WD40 and TPR repeat-co 98.6 2.8E-05 6.1E-10 68.2 19.9 240 26-300 725-994 (1416)
131 TIGR02552 LcrH_SycD type III s 98.5 7.8E-06 1.7E-10 57.8 14.2 97 204-302 18-114 (135)
132 KOG1127 TPR repeat-containing 98.5 3.6E-05 7.8E-10 68.8 20.0 82 256-340 801-882 (1238)
133 KOG3616 Selective LIM binding 98.5 6E-05 1.3E-09 65.5 20.0 134 142-297 741-874 (1636)
134 PF09976 TPR_21: Tetratricopep 98.5 3.6E-05 7.8E-10 55.0 15.9 125 171-298 15-143 (145)
135 KOG2053 Mitochondrial inherita 98.5 0.00092 2E-08 59.6 29.7 222 4-233 21-256 (932)
136 TIGR00756 PPR pentatricopeptid 98.4 4.8E-07 1E-11 46.9 4.2 33 275-307 2-34 (35)
137 PF10037 MRP-S27: Mitochondria 98.4 8.2E-06 1.8E-10 67.8 13.0 121 201-321 64-186 (429)
138 KOG3616 Selective LIM binding 98.4 0.00012 2.6E-09 63.8 20.0 137 175-333 739-875 (1636)
139 PF13812 PPR_3: Pentatricopept 98.4 5.8E-07 1.3E-11 46.2 4.0 33 274-306 2-34 (34)
140 PF09976 TPR_21: Tetratricopep 98.4 4.3E-05 9.2E-10 54.7 15.0 126 204-333 13-143 (145)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.9E-05 6.3E-10 64.3 15.6 124 137-266 173-296 (395)
142 KOG2053 Mitochondrial inherita 98.4 0.0014 3.1E-08 58.4 29.5 225 37-269 19-257 (932)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.9E-05 6.3E-10 64.3 15.4 126 100-231 171-296 (395)
144 PF10037 MRP-S27: Mitochondria 98.3 1.7E-05 3.6E-10 66.1 12.5 124 93-216 61-186 (429)
145 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.2E-11 45.0 4.2 33 65-97 2-34 (35)
146 PF13812 PPR_3: Pentatricopept 98.3 1.6E-06 3.5E-11 44.5 4.1 32 65-96 3-34 (34)
147 KOG1127 TPR repeat-containing 98.2 0.00071 1.5E-08 61.0 21.2 218 113-334 473-697 (1238)
148 PF08579 RPM2: Mitochondrial r 98.2 2.8E-05 6E-10 50.8 9.4 74 70-143 32-114 (120)
149 PF08579 RPM2: Mitochondrial r 98.2 3.3E-05 7.2E-10 50.5 9.4 76 245-320 32-116 (120)
150 PF05843 Suf: Suppressor of fo 98.1 0.00028 6E-09 56.5 15.6 129 135-266 3-135 (280)
151 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00013 2.9E-09 50.1 12.0 99 29-127 4-105 (119)
152 cd00189 TPR Tetratricopeptide 98.1 8.7E-05 1.9E-09 48.4 10.7 94 30-126 3-96 (100)
153 PF12895 Apc3: Anaphase-promot 98.1 1.2E-05 2.5E-10 51.4 5.7 81 5-88 2-83 (84)
154 PF05843 Suf: Suppressor of fo 98.1 0.00025 5.4E-09 56.8 14.3 129 100-231 3-135 (280)
155 PF01535 PPR: PPR repeat; Int 98.1 6.8E-06 1.5E-10 41.1 3.5 30 275-304 2-31 (31)
156 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.0004 8.6E-09 47.7 13.6 22 174-195 45-66 (119)
157 cd00189 TPR Tetratricopeptide 98.0 0.00015 3.2E-09 47.3 11.0 86 212-299 9-94 (100)
158 PLN03088 SGT1, suppressor of 98.0 0.00029 6.3E-09 58.5 14.2 86 215-302 14-99 (356)
159 PRK15363 pathogenicity island 98.0 0.00034 7.3E-09 49.4 12.2 98 203-302 35-132 (157)
160 PLN03088 SGT1, suppressor of 98.0 0.00016 3.5E-09 60.0 12.6 86 4-92 14-99 (356)
161 PF06239 ECSIT: Evolutionarily 98.0 0.00013 2.8E-09 54.1 10.3 103 201-322 45-152 (228)
162 PRK02603 photosystem I assembl 98.0 0.00081 1.7E-08 49.7 14.8 87 169-256 36-124 (172)
163 PF12895 Apc3: Anaphase-promot 98.0 3.8E-05 8.2E-10 49.1 6.8 20 174-193 31-50 (84)
164 PRK15363 pathogenicity island 98.0 0.00044 9.4E-09 48.9 12.4 98 168-267 35-132 (157)
165 PRK10866 outer membrane biogen 98.0 0.0047 1E-07 48.3 20.2 177 139-335 38-239 (243)
166 PF14938 SNAP: Soluble NSF att 98.0 0.0013 2.8E-08 52.9 16.5 127 136-264 117-260 (282)
167 PF01535 PPR: PPR repeat; Int 98.0 1.6E-05 3.4E-10 39.7 3.6 26 136-161 3-28 (31)
168 PRK02603 photosystem I assembl 97.9 0.0011 2.3E-08 49.1 14.8 61 66-126 38-100 (172)
169 KOG1914 mRNA cleavage and poly 97.9 0.0093 2E-07 50.5 31.6 156 168-325 366-527 (656)
170 PF14559 TPR_19: Tetratricopep 97.9 2.5E-05 5.5E-10 47.6 4.9 62 4-69 3-64 (68)
171 COG4235 Cytochrome c biogenesi 97.9 0.0016 3.4E-08 51.0 15.2 117 195-316 149-268 (287)
172 PRK10153 DNA-binding transcrip 97.9 0.0021 4.5E-08 56.1 17.4 143 164-311 333-489 (517)
173 CHL00033 ycf3 photosystem I as 97.9 0.0006 1.3E-08 50.2 12.1 62 170-231 37-100 (168)
174 PF06239 ECSIT: Evolutionarily 97.9 0.00038 8.1E-09 51.7 10.6 115 47-183 34-153 (228)
175 CHL00033 ycf3 photosystem I as 97.8 0.001 2.2E-08 49.0 13.1 81 133-214 35-117 (168)
176 KOG0553 TPR repeat-containing 97.8 0.00042 9.1E-09 53.9 11.1 98 176-277 89-186 (304)
177 KOG0550 Molecular chaperone (D 97.8 0.01 2.2E-07 48.6 18.6 87 215-302 261-350 (486)
178 PF14938 SNAP: Soluble NSF att 97.8 0.0079 1.7E-07 48.4 18.5 150 137-301 98-265 (282)
179 PRK10866 outer membrane biogen 97.8 0.01 2.2E-07 46.4 21.2 180 66-265 35-239 (243)
180 PF13414 TPR_11: TPR repeat; P 97.8 0.00017 3.7E-09 44.0 7.0 65 273-338 3-68 (69)
181 PRK10153 DNA-binding transcrip 97.7 0.003 6.5E-08 55.1 16.1 139 198-340 332-485 (517)
182 KOG0553 TPR repeat-containing 97.7 0.0011 2.5E-08 51.6 11.9 151 141-301 89-244 (304)
183 KOG2041 WD40 repeat protein [G 97.7 0.027 5.8E-07 49.5 22.8 265 34-325 767-1074(1189)
184 PF14559 TPR_19: Tetratricopep 97.7 0.00015 3.2E-09 44.1 5.4 52 39-92 3-54 (68)
185 KOG2796 Uncharacterized conser 97.7 0.014 3E-07 44.9 16.5 140 170-312 179-323 (366)
186 PF12688 TPR_5: Tetratrico pep 97.7 0.0071 1.5E-07 41.2 14.0 89 212-300 10-102 (120)
187 PF13432 TPR_16: Tetratricopep 97.7 0.00043 9.3E-09 41.6 7.3 56 246-302 5-60 (65)
188 PF12688 TPR_5: Tetratrico pep 97.6 0.0035 7.7E-08 42.7 12.1 51 5-55 14-66 (120)
189 KOG0550 Molecular chaperone (D 97.6 0.02 4.4E-07 46.9 17.9 259 71-340 57-353 (486)
190 PF13432 TPR_16: Tetratricopep 97.6 0.00037 7.9E-09 41.9 6.3 61 279-340 3-63 (65)
191 KOG2796 Uncharacterized conser 97.6 0.011 2.3E-07 45.4 14.8 133 65-198 179-316 (366)
192 COG4700 Uncharacterized protei 97.6 0.016 3.4E-07 42.1 18.3 126 95-224 86-214 (251)
193 COG4235 Cytochrome c biogenesi 97.5 0.01 2.2E-07 46.6 14.8 101 60-162 153-256 (287)
194 PF04840 Vps16_C: Vps16, C-ter 97.5 0.038 8.3E-07 45.1 26.2 106 205-330 179-284 (319)
195 KOG1130 Predicted G-alpha GTPa 97.5 0.002 4.3E-08 52.6 10.5 263 2-265 27-342 (639)
196 PF13525 YfiO: Outer membrane 97.5 0.029 6.2E-07 42.7 18.1 22 210-231 148-169 (203)
197 PF13414 TPR_11: TPR repeat; P 97.5 0.00086 1.9E-08 40.8 6.7 60 240-300 5-65 (69)
198 PF13525 YfiO: Outer membrane 97.4 0.03 6.4E-07 42.6 19.3 178 140-328 12-198 (203)
199 KOG1130 Predicted G-alpha GTPa 97.4 0.0062 1.3E-07 49.8 12.2 134 205-338 197-345 (639)
200 PF12921 ATP13: Mitochondrial 97.4 0.01 2.3E-07 40.8 11.6 97 203-319 2-99 (126)
201 PF03704 BTAD: Bacterial trans 97.3 0.0019 4.1E-08 46.3 8.4 71 240-311 64-139 (146)
202 PF13371 TPR_9: Tetratricopept 97.3 0.00077 1.7E-08 41.6 5.2 53 3-56 6-58 (73)
203 PF03704 BTAD: Bacterial trans 97.3 0.0034 7.3E-08 45.0 9.1 71 64-135 63-138 (146)
204 PRK10803 tol-pal system protei 97.3 0.0092 2E-07 47.1 12.0 97 204-302 144-246 (263)
205 PF13424 TPR_12: Tetratricopep 97.3 0.0016 3.5E-08 40.7 6.4 65 274-338 6-76 (78)
206 PRK10803 tol-pal system protei 97.3 0.018 3.9E-07 45.5 13.4 100 169-268 144-247 (263)
207 PRK15331 chaperone protein Sic 97.2 0.021 4.6E-07 40.8 12.0 90 211-302 45-134 (165)
208 PF13281 DUF4071: Domain of un 97.2 0.096 2.1E-06 43.4 19.9 31 202-232 304-334 (374)
209 PF12921 ATP13: Mitochondrial 97.2 0.011 2.4E-07 40.7 10.4 81 26-106 1-96 (126)
210 COG4700 Uncharacterized protei 97.1 0.054 1.2E-06 39.5 17.8 130 130-261 86-216 (251)
211 PF04840 Vps16_C: Vps16, C-ter 97.1 0.11 2.4E-06 42.5 24.9 124 170-319 179-302 (319)
212 PF13371 TPR_9: Tetratricopept 97.1 0.0051 1.1E-07 37.8 7.3 56 35-92 3-58 (73)
213 KOG1538 Uncharacterized conser 97.0 0.13 2.9E-06 45.0 17.2 253 27-303 556-847 (1081)
214 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.16 3.6E-06 42.5 28.7 130 204-336 398-530 (660)
215 PRK15331 chaperone protein Sic 97.0 0.073 1.6E-06 38.1 13.9 91 175-267 44-134 (165)
216 PF13424 TPR_12: Tetratricopep 96.9 0.0032 7E-08 39.4 5.3 63 28-90 6-73 (78)
217 PF09205 DUF1955: Domain of un 96.9 0.068 1.5E-06 36.5 11.5 68 97-165 85-152 (161)
218 PF10300 DUF3808: Protein of u 96.9 0.17 3.6E-06 44.1 17.1 176 47-230 177-374 (468)
219 COG1729 Uncharacterized protei 96.9 0.02 4.3E-07 44.4 10.0 99 28-127 143-244 (262)
220 PF13281 DUF4071: Domain of un 96.7 0.29 6.3E-06 40.6 20.7 165 136-302 144-334 (374)
221 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.1 2.2E-06 44.0 13.1 65 25-92 73-141 (453)
222 KOG2280 Vacuolar assembly/sort 96.6 0.51 1.1E-05 42.3 21.6 110 202-330 683-792 (829)
223 PF10300 DUF3808: Protein of u 96.6 0.41 9E-06 41.7 17.4 166 172-340 192-379 (468)
224 KOG3941 Intermediate in Toll s 96.5 0.038 8.3E-07 43.0 9.5 103 202-323 66-173 (406)
225 PF13170 DUF4003: Protein of u 96.5 0.25 5.4E-06 40.0 14.4 130 8-139 78-223 (297)
226 KOG0543 FKBP-type peptidyl-pro 96.5 0.098 2.1E-06 43.1 11.9 125 176-302 216-355 (397)
227 KOG1538 Uncharacterized conser 96.5 0.26 5.6E-06 43.3 14.8 256 60-335 553-844 (1081)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.054 1.2E-06 45.6 10.6 97 202-304 74-176 (453)
229 KOG2610 Uncharacterized conser 96.4 0.17 3.8E-06 40.6 12.3 153 38-193 114-272 (491)
230 KOG2280 Vacuolar assembly/sort 96.3 0.76 1.7E-05 41.2 21.1 113 167-298 683-795 (829)
231 PF04053 Coatomer_WDAD: Coatom 96.3 0.13 2.7E-06 44.2 12.3 158 36-228 270-427 (443)
232 COG3898 Uncharacterized membra 96.3 0.52 1.1E-05 38.9 30.5 282 5-302 97-392 (531)
233 COG4649 Uncharacterized protei 96.2 0.28 6.1E-06 35.4 12.8 126 37-162 68-196 (221)
234 KOG0543 FKBP-type peptidyl-pro 96.2 0.1 2.2E-06 42.9 10.8 121 2-126 218-354 (397)
235 PF13374 TPR_10: Tetratricopep 96.2 0.013 2.9E-07 31.2 4.2 40 309-348 3-42 (42)
236 KOG4555 TPR repeat-containing 96.2 0.16 3.5E-06 34.7 9.8 90 36-127 52-144 (175)
237 KOG2041 WD40 repeat protein [G 96.2 0.87 1.9E-05 40.7 22.0 125 24-157 689-820 (1189)
238 KOG2114 Vacuolar assembly/sort 96.2 0.62 1.3E-05 42.3 15.8 179 66-265 337-517 (933)
239 PF08631 SPO22: Meiosis protei 96.1 0.6 1.3E-05 37.6 25.2 63 99-162 85-150 (278)
240 COG1729 Uncharacterized protei 96.0 0.41 8.9E-06 37.4 12.4 97 205-302 144-244 (262)
241 KOG2610 Uncharacterized conser 95.9 0.57 1.2E-05 37.8 13.3 154 110-265 115-274 (491)
242 PF07035 Mic1: Colon cancer-as 95.9 0.41 9E-06 34.7 16.0 26 194-219 20-45 (167)
243 COG3118 Thioredoxin domain-con 95.9 0.68 1.5E-05 36.8 16.2 142 73-217 144-286 (304)
244 KOG1941 Acetylcholine receptor 95.9 0.8 1.7E-05 37.5 13.9 226 4-229 18-272 (518)
245 PF04053 Coatomer_WDAD: Coatom 95.8 0.91 2E-05 39.2 15.3 27 202-228 346-372 (443)
246 PF13428 TPR_14: Tetratricopep 95.8 0.052 1.1E-06 29.4 5.2 28 275-302 3-30 (44)
247 KOG3941 Intermediate in Toll s 95.7 0.16 3.5E-06 39.7 9.4 105 60-183 64-173 (406)
248 PF13428 TPR_14: Tetratricopep 95.7 0.045 9.6E-07 29.6 4.8 28 29-56 3-30 (44)
249 COG3629 DnrI DNA-binding trans 95.6 0.21 4.6E-06 39.6 10.0 61 203-264 153-213 (280)
250 COG3629 DnrI DNA-binding trans 95.6 0.23 4.9E-06 39.4 10.0 78 64-142 154-236 (280)
251 KOG2114 Vacuolar assembly/sort 95.5 0.33 7.2E-06 44.0 11.7 177 100-299 336-516 (933)
252 KOG1585 Protein required for f 95.5 0.86 1.9E-05 35.1 15.6 24 66-89 34-57 (308)
253 smart00299 CLH Clathrin heavy 95.4 0.62 1.3E-05 32.9 15.3 43 138-181 12-54 (140)
254 PRK11906 transcriptional regul 95.3 1.6 3.5E-05 37.2 17.3 160 169-331 252-430 (458)
255 KOG4570 Uncharacterized conser 95.2 0.18 3.9E-06 40.1 8.2 105 22-128 59-165 (418)
256 COG5107 RNA14 Pre-mRNA 3'-end 95.2 1.7 3.6E-05 36.9 21.4 145 99-248 398-545 (660)
257 PF13512 TPR_18: Tetratricopep 95.2 0.7 1.5E-05 32.4 11.3 54 179-232 21-76 (142)
258 PF09205 DUF1955: Domain of un 95.1 0.67 1.5E-05 31.9 15.0 140 144-305 13-152 (161)
259 COG0457 NrfG FOG: TPR repeat [ 95.0 1.2 2.6E-05 34.3 28.5 224 76-302 36-265 (291)
260 PF10602 RPN7: 26S proteasome 95.0 0.47 1E-05 35.1 9.7 98 28-125 37-140 (177)
261 PF08631 SPO22: Meiosis protei 95.0 1.5 3.3E-05 35.3 24.9 162 170-334 86-272 (278)
262 PF13929 mRNA_stabil: mRNA sta 95.0 1.5 3.2E-05 34.9 16.0 61 131-191 200-261 (292)
263 PF07079 DUF1347: Protein of u 94.9 2.1 4.5E-05 36.3 25.6 42 138-179 133-178 (549)
264 KOG4555 TPR repeat-containing 94.9 0.8 1.7E-05 31.5 10.8 52 178-230 53-104 (175)
265 smart00299 CLH Clathrin heavy 94.8 0.94 2E-05 32.0 15.6 127 171-320 10-137 (140)
266 PF10602 RPN7: 26S proteasome 94.8 0.55 1.2E-05 34.8 9.6 62 100-161 38-101 (177)
267 PF13176 TPR_7: Tetratricopept 94.5 0.12 2.5E-06 26.5 4.1 27 311-337 2-28 (36)
268 PRK11906 transcriptional regul 94.5 2.7 5.9E-05 35.9 17.2 162 134-298 252-432 (458)
269 COG4649 Uncharacterized protei 94.5 1.3 2.9E-05 32.2 14.0 140 61-201 57-200 (221)
270 KOG4570 Uncharacterized conser 94.4 1.4 3.1E-05 35.3 11.3 47 218-264 115-161 (418)
271 KOG1464 COP9 signalosome, subu 94.4 1.9 4.2E-05 33.8 15.3 49 112-160 41-92 (440)
272 PF13170 DUF4003: Protein of u 94.4 2.3 5E-05 34.5 21.7 131 150-282 79-226 (297)
273 COG3118 Thioredoxin domain-con 94.4 2.1 4.6E-05 34.1 18.2 144 177-324 143-288 (304)
274 PF13176 TPR_7: Tetratricopept 94.3 0.12 2.7E-06 26.4 3.9 26 275-300 1-26 (36)
275 KOG1550 Extracellular protein 94.2 4 8.6E-05 36.7 23.1 244 43-303 228-505 (552)
276 COG4105 ComL DNA uptake lipopr 94.2 2.1 4.5E-05 33.4 20.4 55 144-198 45-101 (254)
277 PF07079 DUF1347: Protein of u 94.2 3.1 6.8E-05 35.4 32.3 79 254-334 437-521 (549)
278 PF09613 HrpB1_HrpK: Bacterial 94.0 1.6 3.5E-05 31.4 11.7 114 33-153 16-129 (160)
279 PF13431 TPR_17: Tetratricopep 94.0 0.072 1.6E-06 26.9 2.5 31 16-47 3-33 (34)
280 COG0457 NrfG FOG: TPR repeat [ 93.7 2.4 5.3E-05 32.5 28.7 227 40-268 36-266 (291)
281 PF09613 HrpB1_HrpK: Bacterial 93.7 1.8 4E-05 31.1 12.3 113 70-189 17-130 (160)
282 KOG1258 mRNA processing protei 93.5 4.9 0.00011 35.4 32.8 88 4-92 91-180 (577)
283 COG4785 NlpI Lipoprotein NlpI, 93.4 2.7 5.9E-05 31.9 14.7 185 37-234 75-268 (297)
284 PF02259 FAT: FAT domain; Int 93.4 4.2 9.1E-05 34.0 20.5 202 33-266 4-212 (352)
285 PF07035 Mic1: Colon cancer-as 93.3 2.3 5E-05 31.0 15.4 37 14-50 16-52 (167)
286 COG3898 Uncharacterized membra 93.3 4.2 9E-05 34.0 29.4 290 29-334 84-389 (531)
287 PF13431 TPR_17: Tetratricopep 93.2 0.11 2.4E-06 26.2 2.4 21 272-292 12-32 (34)
288 COG4105 ComL DNA uptake lipopr 93.2 3.2 7E-05 32.4 20.4 54 74-127 45-100 (254)
289 KOG1920 IkappaB kinase complex 93.2 8.6 0.00019 37.1 22.4 111 171-299 942-1052(1265)
290 PF04184 ST7: ST7 protein; In 93.1 5.2 0.00011 34.6 16.4 62 240-301 261-323 (539)
291 KOG1941 Acetylcholine receptor 93.1 4.3 9.4E-05 33.5 16.2 227 37-264 16-272 (518)
292 PF04097 Nic96: Nup93/Nic96; 92.9 7.4 0.00016 35.5 19.8 90 243-334 419-531 (613)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 92.8 1.4 3E-05 28.4 7.2 44 222-265 26-69 (103)
294 PF13512 TPR_18: Tetratricopep 92.7 2.5 5.4E-05 29.8 12.3 72 143-214 20-93 (142)
295 PF00515 TPR_1: Tetratricopept 92.7 0.32 6.9E-06 24.3 3.8 28 275-302 3-30 (34)
296 PF04184 ST7: ST7 protein; In 92.7 6.2 0.00013 34.2 20.1 59 172-230 263-322 (539)
297 KOG1920 IkappaB kinase complex 92.6 10 0.00022 36.6 22.5 87 205-301 941-1027(1265)
298 PF11207 DUF2989: Protein of u 92.6 2.9 6.4E-05 31.4 9.8 79 73-153 117-198 (203)
299 PF00515 TPR_1: Tetratricopept 92.5 0.47 1E-05 23.6 4.3 30 310-339 3-32 (34)
300 cd00923 Cyt_c_Oxidase_Va Cytoc 92.4 1.8 3.8E-05 28.0 7.3 44 152-195 26-69 (103)
301 PF07719 TPR_2: Tetratricopept 92.4 0.49 1.1E-05 23.4 4.3 28 275-302 3-30 (34)
302 PRK11619 lytic murein transgly 91.9 10 0.00022 34.9 28.2 254 65-335 101-373 (644)
303 TIGR02561 HrpB1_HrpK type III 91.7 3.5 7.6E-05 29.2 11.3 52 39-92 22-73 (153)
304 COG3947 Response regulator con 91.7 5.8 0.00013 31.7 16.6 58 136-194 282-339 (361)
305 PF07719 TPR_2: Tetratricopept 91.6 0.51 1.1E-05 23.4 3.8 31 309-339 2-32 (34)
306 PRK15180 Vi polysaccharide bio 91.3 8.9 0.00019 33.1 13.6 97 135-233 325-421 (831)
307 PF02284 COX5A: Cytochrome c o 91.3 2.9 6.2E-05 27.4 9.4 46 257-302 29-74 (108)
308 TIGR02561 HrpB1_HrpK type III 91.1 4.1 9E-05 28.9 10.7 51 5-57 23-74 (153)
309 PF11207 DUF2989: Protein of u 91.0 3.6 7.8E-05 30.9 8.9 42 251-292 153-197 (203)
310 PF13374 TPR_10: Tetratricopep 91.0 0.72 1.6E-05 24.1 4.2 29 274-302 3-31 (42)
311 KOG4234 TPR repeat-containing 90.9 3.8 8.2E-05 30.7 8.7 90 211-302 103-197 (271)
312 KOG1550 Extracellular protein 90.6 13 0.00027 33.6 22.6 118 3-128 260-394 (552)
313 PF13181 TPR_8: Tetratricopept 90.4 0.91 2E-05 22.5 4.0 30 310-339 3-32 (34)
314 PF02259 FAT: FAT domain; Int 90.0 10 0.00022 31.7 23.2 198 4-232 10-213 (352)
315 PF13929 mRNA_stabil: mRNA sta 89.9 8.8 0.00019 30.7 20.3 84 235-318 199-288 (292)
316 PF00637 Clathrin: Region in C 89.9 0.2 4.4E-06 35.6 1.7 87 208-301 12-98 (143)
317 COG2976 Uncharacterized protei 89.8 6.8 0.00015 29.3 14.4 92 210-303 96-189 (207)
318 KOG1585 Protein required for f 89.3 8.9 0.00019 29.9 18.9 206 28-261 32-250 (308)
319 COG2976 Uncharacterized protei 89.2 7.7 0.00017 29.0 12.6 131 204-338 55-189 (207)
320 PF02284 COX5A: Cytochrome c o 89.0 4.8 0.0001 26.4 9.0 45 152-196 29-73 (108)
321 PF00637 Clathrin: Region in C 88.9 0.2 4.3E-06 35.6 1.1 83 139-228 13-95 (143)
322 PRK09687 putative lyase; Provi 88.6 12 0.00025 30.3 27.9 235 60-319 34-278 (280)
323 TIGR03504 FimV_Cterm FimV C-te 88.5 1.4 2.9E-05 23.8 3.8 24 279-302 5-28 (44)
324 PF13174 TPR_6: Tetratricopept 88.1 0.42 9E-06 23.5 1.7 24 33-56 6-29 (33)
325 COG4455 ImpE Protein of avirul 88.0 5.7 0.00012 30.3 8.0 52 70-122 8-59 (273)
326 COG4455 ImpE Protein of avirul 88.0 5.5 0.00012 30.4 7.9 76 30-107 4-81 (273)
327 PF13174 TPR_6: Tetratricopept 87.9 1.2 2.6E-05 21.7 3.4 24 279-302 6-29 (33)
328 PF13181 TPR_8: Tetratricopept 87.7 2 4.3E-05 21.2 4.1 29 274-302 2-30 (34)
329 PF07163 Pex26: Pex26 protein; 87.2 12 0.00025 29.9 9.5 87 105-191 90-181 (309)
330 PF07721 TPR_4: Tetratricopept 87.0 1.1 2.4E-05 20.8 2.7 18 279-296 7-24 (26)
331 KOG4648 Uncharacterized conser 86.3 5.1 0.00011 32.8 7.4 48 3-51 108-155 (536)
332 PF10579 Rapsyn_N: Rapsyn N-te 85.8 6.4 0.00014 24.4 6.5 47 285-331 18-66 (80)
333 KOG1258 mRNA processing protei 85.8 25 0.00055 31.3 25.8 312 9-329 62-421 (577)
334 KOG4648 Uncharacterized conser 85.3 8.7 0.00019 31.5 8.2 54 176-230 105-158 (536)
335 PF04097 Nic96: Nup93/Nic96; 84.8 32 0.00069 31.6 19.5 88 175-267 265-356 (613)
336 KOG0276 Vesicle coat complex C 84.6 22 0.00048 31.8 10.8 101 178-299 647-747 (794)
337 PF07163 Pex26: Pex26 protein; 84.4 19 0.00042 28.8 10.1 91 136-226 86-181 (309)
338 PF06552 TOM20_plant: Plant sp 84.0 15 0.00032 27.2 9.0 13 305-317 110-122 (186)
339 TIGR03504 FimV_Cterm FimV C-te 83.8 3.3 7.2E-05 22.3 3.8 16 143-158 9-24 (44)
340 KOG0890 Protein kinase of the 83.8 65 0.0014 34.3 24.1 145 4-157 1395-1542(2382)
341 KOG4077 Cytochrome c oxidase, 83.2 12 0.00027 25.7 7.0 41 261-301 72-112 (149)
342 COG1747 Uncharacterized N-term 83.0 32 0.00069 30.2 24.2 164 132-302 65-234 (711)
343 PF09477 Type_III_YscG: Bacter 82.6 12 0.00025 24.9 9.2 88 40-136 19-106 (116)
344 PF13762 MNE1: Mitochondrial s 81.6 16 0.00036 25.9 9.4 50 97-146 78-128 (145)
345 PF14689 SPOB_a: Sensor_kinase 81.3 5.3 0.00011 23.5 4.4 29 307-335 22-50 (62)
346 COG3947 Response regulator con 81.3 27 0.00058 28.2 17.2 69 275-344 281-349 (361)
347 PF10345 Cohesin_load: Cohesin 81.1 45 0.00098 30.7 30.4 183 10-194 39-251 (608)
348 TIGR02508 type_III_yscG type I 80.8 13 0.00029 24.4 9.1 78 43-128 21-98 (115)
349 PF11846 DUF3366: Domain of un 80.5 13 0.00028 28.0 7.5 33 270-302 141-173 (193)
350 smart00028 TPR Tetratricopepti 80.1 3.5 7.7E-05 19.2 3.2 27 29-55 3-29 (34)
351 KOG0276 Vesicle coat complex C 79.9 22 0.00048 31.8 9.1 104 34-159 644-747 (794)
352 PF13934 ELYS: Nuclear pore co 79.5 27 0.00059 27.2 9.7 103 30-144 79-183 (226)
353 PF06552 TOM20_plant: Plant sp 79.5 23 0.0005 26.3 8.1 96 8-109 7-124 (186)
354 PF11848 DUF3368: Domain of un 79.4 8.4 0.00018 21.2 4.9 34 283-316 12-45 (48)
355 PHA02875 ankyrin repeat protei 79.3 34 0.00075 29.5 10.7 209 70-309 6-231 (413)
356 KOG4077 Cytochrome c oxidase, 79.1 18 0.00039 24.9 7.3 43 154-196 70-112 (149)
357 cd00280 TRFH Telomeric Repeat 78.9 22 0.00047 26.5 7.6 21 71-91 119-139 (200)
358 PF14689 SPOB_a: Sensor_kinase 78.8 5.9 0.00013 23.3 4.1 45 8-54 6-50 (62)
359 PF11846 DUF3366: Domain of un 78.2 12 0.00026 28.2 6.7 33 95-127 141-173 (193)
360 PF10579 Rapsyn_N: Rapsyn N-te 77.1 10 0.00022 23.6 4.7 46 250-295 18-65 (80)
361 TIGR02508 type_III_yscG type I 76.6 19 0.0004 23.7 8.2 51 107-163 48-98 (115)
362 PF11848 DUF3368: Domain of un 76.5 11 0.00023 20.8 5.0 34 73-106 12-45 (48)
363 KOG4507 Uncharacterized conser 76.4 20 0.00044 32.0 8.0 90 213-303 617-706 (886)
364 COG0735 Fur Fe2+/Zn2+ uptake r 75.4 26 0.00056 25.0 7.3 61 192-253 10-70 (145)
365 PF12862 Apc5: Anaphase-promot 75.3 12 0.00027 24.2 5.3 22 34-55 48-69 (94)
366 PF13762 MNE1: Mitochondrial s 75.2 27 0.00058 24.9 11.2 81 171-251 42-128 (145)
367 PHA02875 ankyrin repeat protei 74.6 56 0.0012 28.2 13.9 212 35-273 7-230 (413)
368 PRK10564 maltose regulon perip 74.5 10 0.00022 30.7 5.4 39 274-312 258-296 (303)
369 KOG2063 Vacuolar assembly/sort 74.5 84 0.0018 30.2 17.4 187 135-321 506-745 (877)
370 PF08424 NRDE-2: NRDE-2, neces 72.3 55 0.0012 27.2 17.1 98 165-264 16-128 (321)
371 PRK15180 Vi polysaccharide bio 72.1 68 0.0015 28.1 21.7 119 5-128 302-421 (831)
372 PRK10941 hypothetical protein; 72.0 29 0.00064 27.8 7.6 78 30-109 184-262 (269)
373 COG2909 MalT ATP-dependent tra 71.8 94 0.002 29.6 25.3 197 143-339 425-649 (894)
374 COG5108 RPO41 Mitochondrial DN 71.7 48 0.001 30.3 9.2 91 32-125 33-130 (1117)
375 PF11817 Foie-gras_1: Foie gra 71.7 28 0.00062 27.5 7.5 79 44-125 162-245 (247)
376 KOG2297 Predicted translation 71.1 56 0.0012 26.7 20.6 17 275-291 323-339 (412)
377 PF07575 Nucleopor_Nup85: Nup8 70.9 75 0.0016 29.0 10.8 32 285-316 507-538 (566)
378 PRK10564 maltose regulon perip 70.5 16 0.00035 29.5 5.7 44 59-102 252-296 (303)
379 COG4785 NlpI Lipoprotein NlpI, 70.4 48 0.001 25.6 17.9 181 77-269 79-268 (297)
380 COG0735 Fur Fe2+/Zn2+ uptake r 70.0 32 0.0007 24.5 6.8 62 225-287 8-69 (145)
381 KOG4507 Uncharacterized conser 69.9 43 0.00094 30.1 8.4 87 111-198 620-706 (886)
382 COG5187 RPN7 26S proteasome re 68.6 62 0.0013 26.2 13.5 28 62-89 114-141 (412)
383 COG5159 RPN6 26S proteasome re 68.2 63 0.0014 26.1 11.4 33 277-309 129-165 (421)
384 cd08819 CARD_MDA5_2 Caspase ac 67.8 29 0.00063 22.1 6.4 36 285-325 48-83 (88)
385 PF11817 Foie-gras_1: Foie gra 67.6 42 0.0009 26.6 7.7 62 99-160 179-245 (247)
386 PF11663 Toxin_YhaV: Toxin wit 67.4 7 0.00015 27.1 2.8 30 146-177 108-137 (140)
387 KOG2066 Vacuolar assembly/sort 67.3 1.1E+02 0.0024 28.7 13.4 168 105-301 363-533 (846)
388 cd00280 TRFH Telomeric Repeat 66.7 51 0.0011 24.6 9.8 41 280-323 118-158 (200)
389 COG5108 RPO41 Mitochondrial DN 66.6 67 0.0014 29.5 9.0 90 208-300 33-130 (1117)
390 KOG2471 TPR repeat-containing 66.5 92 0.002 27.5 14.8 107 213-321 250-382 (696)
391 PF08424 NRDE-2: NRDE-2, neces 66.5 75 0.0016 26.4 16.2 24 176-199 162-185 (321)
392 KOG4234 TPR repeat-containing 66.4 56 0.0012 24.9 12.5 93 176-269 103-199 (271)
393 KOG1308 Hsp70-interacting prot 66.0 5 0.00011 32.8 2.2 117 37-159 124-241 (377)
394 PRK11619 lytic murein transgly 65.8 1.2E+02 0.0025 28.3 26.0 228 60-300 126-373 (644)
395 KOG1308 Hsp70-interacting prot 65.6 11 0.00024 31.0 4.0 92 215-308 126-217 (377)
396 PRK10941 hypothetical protein; 64.9 73 0.0016 25.7 10.3 77 241-318 184-261 (269)
397 COG2909 MalT ATP-dependent tra 64.8 1.3E+02 0.0029 28.7 27.8 224 109-332 426-683 (894)
398 KOG4521 Nuclear pore complex, 64.7 1.5E+02 0.0034 29.4 12.9 119 101-225 986-1124(1480)
399 KOG0687 26S proteasome regulat 64.7 80 0.0017 26.1 13.8 140 53-196 60-209 (393)
400 cd08819 CARD_MDA5_2 Caspase ac 64.2 35 0.00076 21.8 6.9 14 182-195 50-63 (88)
401 PF11838 ERAP1_C: ERAP1-like C 63.7 83 0.0018 25.9 13.5 87 39-128 142-231 (324)
402 KOG2063 Vacuolar assembly/sort 63.5 1.5E+02 0.0032 28.7 17.2 26 66-91 507-532 (877)
403 PRK09687 putative lyase; Provi 63.3 80 0.0017 25.6 28.3 234 25-284 35-278 (280)
404 smart00386 HAT HAT (Half-A-TPR 62.8 16 0.00034 17.3 4.1 29 6-35 1-29 (33)
405 KOG0376 Serine-threonine phosp 62.8 27 0.00059 30.2 5.9 102 3-110 15-117 (476)
406 KOG3807 Predicted membrane pro 62.3 29 0.00062 28.6 5.7 107 8-130 232-343 (556)
407 KOG0687 26S proteasome regulat 62.1 90 0.002 25.8 14.2 117 43-161 84-209 (393)
408 cd07153 Fur_like Ferric uptake 61.3 28 0.0006 23.5 5.0 47 244-290 6-52 (116)
409 PF10345 Cohesin_load: Cohesin 61.2 1.4E+02 0.003 27.6 31.5 155 4-159 72-251 (608)
410 PRK11639 zinc uptake transcrip 60.9 58 0.0013 24.0 6.8 62 229-291 17-78 (169)
411 PF09477 Type_III_YscG: Bacter 60.2 49 0.0011 22.1 9.9 79 78-163 21-99 (116)
412 KOG4567 GTPase-activating prot 59.1 92 0.002 25.6 7.8 70 223-297 263-342 (370)
413 PF07064 RIC1: RIC1; InterPro 59.1 92 0.002 24.9 16.8 44 29-75 84-127 (258)
414 PF07575 Nucleopor_Nup85: Nup8 58.1 1.5E+02 0.0033 27.1 18.1 65 235-301 402-466 (566)
415 KOG3677 RNA polymerase I-assoc 58.1 1.2E+02 0.0027 26.1 9.9 60 66-125 238-299 (525)
416 KOG4642 Chaperone-dependent E3 58.0 91 0.002 24.6 11.0 117 178-298 20-142 (284)
417 PF09454 Vps23_core: Vps23 cor 57.9 38 0.00083 20.2 4.4 50 271-321 6-55 (65)
418 PF01475 FUR: Ferric uptake re 57.8 26 0.00056 23.9 4.4 45 278-322 12-56 (120)
419 PF14561 TPR_20: Tetratricopep 57.7 48 0.001 21.3 9.2 55 24-78 19-73 (90)
420 KOG0991 Replication factor C, 57.6 92 0.002 24.5 13.0 92 178-272 169-272 (333)
421 PF09670 Cas_Cas02710: CRISPR- 57.6 1.2E+02 0.0027 25.9 10.6 56 106-162 139-198 (379)
422 PRK13342 recombination factor 57.3 1.3E+02 0.0028 26.1 19.9 87 251-337 243-334 (413)
423 COG0790 FOG: TPR repeat, SEL1 56.1 1.1E+02 0.0024 24.8 22.1 25 218-242 252-276 (292)
424 cd07153 Fur_like Ferric uptake 55.2 45 0.00098 22.5 5.2 47 209-255 6-52 (116)
425 COG1747 Uncharacterized N-term 55.1 1.6E+02 0.0034 26.4 24.8 179 60-246 63-247 (711)
426 smart00804 TAP_C C-terminal do 54.9 10 0.00022 22.4 1.7 24 40-63 38-61 (63)
427 KOG0686 COP9 signalosome, subu 54.8 1.4E+02 0.003 25.7 14.5 160 99-266 151-332 (466)
428 KOG3807 Predicted membrane pro 54.6 1.3E+02 0.0027 25.1 9.4 115 39-167 228-345 (556)
429 KOG2396 HAT (Half-A-TPR) repea 54.4 1.6E+02 0.0034 26.2 22.9 239 84-337 303-559 (568)
430 PF10366 Vps39_1: Vacuolar sor 53.9 65 0.0014 21.6 7.8 27 275-301 41-67 (108)
431 PF09454 Vps23_core: Vps23 cor 53.8 46 0.001 19.9 4.5 45 202-247 7-51 (65)
432 PRK09462 fur ferric uptake reg 53.8 79 0.0017 22.6 7.3 63 227-290 6-69 (148)
433 PF11663 Toxin_YhaV: Toxin wit 52.6 20 0.00042 25.1 2.9 29 217-247 109-137 (140)
434 KOG4567 GTPase-activating prot 52.4 1.3E+02 0.0029 24.7 8.3 72 47-124 263-344 (370)
435 PRK11639 zinc uptake transcrip 52.3 93 0.002 22.9 7.6 60 195-255 18-77 (169)
436 KOG0376 Serine-threonine phosp 51.8 51 0.0011 28.7 5.8 53 178-231 14-66 (476)
437 PF03943 TAP_C: TAP C-terminal 51.7 11 0.00024 21.1 1.4 24 40-63 26-49 (51)
438 KOG2396 HAT (Half-A-TPR) repea 51.6 1.8E+02 0.0038 25.9 31.5 195 130-335 312-523 (568)
439 PF09670 Cas_Cas02710: CRISPR- 51.5 1.6E+02 0.0034 25.3 12.0 54 143-197 141-198 (379)
440 PF01475 FUR: Ferric uptake re 50.7 44 0.00096 22.7 4.6 46 208-253 12-57 (120)
441 PF03745 DUF309: Domain of unk 50.5 51 0.0011 19.4 5.5 48 283-330 9-61 (62)
442 COG5187 RPN7 26S proteasome re 50.2 1.4E+02 0.003 24.4 13.9 24 204-227 116-139 (412)
443 PF14853 Fis1_TPR_C: Fis1 C-te 50.2 46 0.001 18.8 5.7 29 279-309 7-35 (53)
444 COG5159 RPN6 26S proteasome re 50.1 1.4E+02 0.003 24.3 16.4 195 71-265 11-233 (421)
445 PF12926 MOZART2: Mitotic-spin 48.6 70 0.0015 20.4 7.9 42 154-195 29-70 (88)
446 PF10475 DUF2450: Protein of u 48.5 1.5E+02 0.0033 24.2 9.4 88 167-259 126-218 (291)
447 PRK09462 fur ferric uptake reg 47.9 1E+02 0.0022 22.0 7.5 60 194-254 8-68 (148)
448 PF12862 Apc5: Anaphase-promot 47.5 75 0.0016 20.5 7.0 55 248-302 8-70 (94)
449 PF00244 14-3-3: 14-3-3 protei 47.3 1.4E+02 0.003 23.5 10.5 163 104-266 7-197 (236)
450 PF02847 MA3: MA3 domain; Int 47.1 84 0.0018 21.0 7.4 21 174-194 8-28 (113)
451 PF08311 Mad3_BUB1_I: Mad3/BUB 47.0 95 0.0021 21.5 7.6 62 60-124 63-125 (126)
452 PF07064 RIC1: RIC1; InterPro 46.6 1.5E+02 0.0033 23.7 15.3 67 278-344 184-256 (258)
453 KOG0890 Protein kinase of the 46.3 4.4E+02 0.0095 29.0 22.1 257 32-302 1454-1731(2382)
454 PF04762 IKI3: IKI3 family; I 45.2 3.2E+02 0.0069 27.0 13.3 29 134-162 813-843 (928)
455 PF08870 DUF1832: Domain of un 44.9 63 0.0014 21.9 4.4 6 49-54 11-16 (113)
456 COG0790 FOG: TPR repeat, SEL1 44.7 1.7E+02 0.0037 23.7 21.9 25 253-277 252-276 (292)
457 TIGR03184 DNA_S_dndE DNA sulfu 44.2 90 0.0019 20.9 4.9 17 45-61 6-22 (105)
458 PF02184 HAT: HAT (Half-A-TPR) 43.9 43 0.00093 16.7 3.4 24 7-32 2-25 (32)
459 KOG1464 COP9 signalosome, subu 43.7 1.7E+02 0.0037 23.6 24.6 81 7-87 42-129 (440)
460 KOG2659 LisH motif-containing 43.7 1.6E+02 0.0034 23.0 8.7 101 232-332 20-127 (228)
461 PF07678 A2M_comp: A-macroglob 43.7 1.6E+02 0.0035 23.3 10.6 31 166-196 130-160 (246)
462 PRK12798 chemotaxis protein; R 43.7 2.2E+02 0.0047 24.7 21.5 151 111-266 125-285 (421)
463 KOG0686 COP9 signalosome, subu 43.2 2.2E+02 0.0047 24.6 14.7 174 64-245 151-351 (466)
464 KOG3364 Membrane protein invol 42.8 1.2E+02 0.0026 21.5 9.9 67 236-302 30-100 (149)
465 KOG2422 Uncharacterized conser 42.3 2.7E+02 0.0058 25.4 16.3 93 245-337 349-448 (665)
466 TIGR01987 HI0074 nucleotidyltr 42.2 1.1E+02 0.0025 21.1 6.2 75 6-83 3-79 (123)
467 COG4259 Uncharacterized protei 41.8 1E+02 0.0022 20.3 6.4 30 70-101 79-108 (121)
468 PF11123 DNA_Packaging_2: DNA 40.7 86 0.0019 19.2 4.8 32 8-40 13-44 (82)
469 KOG2168 Cullins [Cell cycle co 39.7 3.5E+02 0.0076 26.0 13.7 313 2-334 335-661 (835)
470 KOG2297 Predicted translation 39.5 2.2E+02 0.0047 23.5 16.8 71 178-258 265-341 (412)
471 PRK09857 putative transposase; 39.4 2.2E+02 0.0047 23.4 9.0 66 241-307 209-274 (292)
472 PF09986 DUF2225: Uncharacteri 39.1 1.8E+02 0.0039 22.5 12.7 49 80-128 142-195 (214)
473 PF08311 Mad3_BUB1_I: Mad3/BUB 38.6 1.3E+02 0.0029 20.8 9.9 43 151-193 81-124 (126)
474 PF04910 Tcf25: Transcriptiona 38.5 2.5E+02 0.0054 23.9 20.7 48 73-125 20-67 (360)
475 PF10475 DUF2450: Protein of u 37.9 2.3E+02 0.0049 23.2 9.8 24 201-224 195-218 (291)
476 KOG1839 Uncharacterized protei 37.7 4.6E+02 0.0099 26.7 11.8 154 143-296 942-1122(1236)
477 PF12926 MOZART2: Mitotic-spin 36.8 1.1E+02 0.0025 19.5 7.9 44 84-127 29-72 (88)
478 PF02607 B12-binding_2: B12 bi 36.8 64 0.0014 19.8 3.4 38 74-111 12-49 (79)
479 cd08326 CARD_CASP9 Caspase act 36.7 1.1E+02 0.0024 19.4 4.6 63 11-82 18-80 (84)
480 KOG1586 Protein required for f 36.7 2.1E+02 0.0046 22.6 18.2 236 1-245 23-272 (288)
481 PF04090 RNA_pol_I_TF: RNA pol 36.6 1.9E+02 0.0042 22.1 8.9 111 239-349 42-180 (199)
482 COG4976 Predicted methyltransf 36.4 2.1E+02 0.0046 22.5 7.6 55 2-57 5-59 (287)
483 KOG0991 Replication factor C, 36.4 2.2E+02 0.0047 22.6 13.5 104 143-250 169-284 (333)
484 PF11838 ERAP1_C: ERAP1-like C 36.1 2.5E+02 0.0053 23.2 21.1 82 184-268 146-231 (324)
485 COG2405 Predicted nucleic acid 36.0 1E+02 0.0022 21.8 4.3 42 100-142 112-153 (157)
486 PF09986 DUF2225: Uncharacteri 36.0 2.1E+02 0.0044 22.2 11.0 29 275-303 167-195 (214)
487 PRK14956 DNA polymerase III su 35.9 3.2E+02 0.007 24.4 12.2 32 92-125 196-227 (484)
488 PF10366 Vps39_1: Vacuolar sor 35.9 1.4E+02 0.0029 20.1 7.8 27 100-126 41-67 (108)
489 COG2812 DnaX DNA polymerase II 35.7 3.3E+02 0.0072 24.6 9.7 48 44-93 181-228 (515)
490 PF05664 DUF810: Protein of un 35.4 2.8E+02 0.006 26.1 8.2 33 233-265 212-248 (677)
491 PRK13342 recombination factor 35.3 3E+02 0.0066 23.9 19.6 35 216-250 243-277 (413)
492 KOG4642 Chaperone-dependent E3 35.2 2.3E+02 0.005 22.5 14.1 119 142-264 19-143 (284)
493 PF02847 MA3: MA3 domain; Int 34.5 1.4E+02 0.003 19.9 7.9 20 105-124 9-28 (113)
494 PF10255 Paf67: RNA polymerase 34.3 3.1E+02 0.0068 23.8 10.2 134 167-300 38-191 (404)
495 PF12002 MgsA_C: MgsA AAA+ ATP 34.3 1.9E+02 0.0042 21.4 9.9 19 218-236 3-21 (168)
496 PRK09857 putative transposase; 34.1 2.6E+02 0.0057 22.9 9.8 27 244-270 246-272 (292)
497 KOG1839 Uncharacterized protei 34.0 5.2E+02 0.011 26.3 13.1 158 179-336 943-1127(1236)
498 COG2178 Predicted RNA-binding 33.9 2.1E+02 0.0046 21.7 11.8 25 206-230 32-56 (204)
499 PRK13341 recombination factor 33.0 4.4E+02 0.0096 25.2 18.8 90 237-327 258-352 (725)
500 COG0819 TenA Putative transcri 33.0 2.4E+02 0.0051 22.0 8.2 102 227-328 98-210 (218)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.8e-59 Score=419.15 Aligned_cols=335 Identities=21% Similarity=0.331 Sum_probs=326.4
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. ++.||..+|+.+|.+|++.|++++
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHH
Confidence 5788999999999999999999999999999999999999999999999999987 668999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhc--cCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018876 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS--EDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.. .++.||..+|+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976 578999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH
Q 018876 160 QSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (349)
.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 319 (349)
+|+.++.+|++.|++++|.++|+.|.+.++.||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|.
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhHHHHHHHHHh
Q 018876 320 TNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~ 337 (349)
+.|+.+.|.++++.+.+.
T Consensus 766 k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HCCCHHHHHHHHHHHHHc
Confidence 999999999999988764
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.5e-58 Score=411.63 Aligned_cols=335 Identities=23% Similarity=0.341 Sum_probs=320.6
Q ss_pred CCCCCChHHHHHHHHHHHhcCCC--------------------------------CchhhHHHHHHHHHcCCChhHHHHH
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCD--------------------------------ANTQSFTALLSAYGRSGLFDKAFSL 49 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~ 49 (349)
|++.|++++|.++|++|.+.|+. |+..+|+.++.+|++.|+++.|.++
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~l 459 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRV 459 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34668888888888888877643 6888999999999999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCC
Q 018876 50 LEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC 129 (349)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 129 (349)
|+.|.+. ++.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+
T Consensus 460 f~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 460 LRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 9999987 669999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 018876 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS--AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207 (349)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (349)
.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|.+.++.|+..+|+
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 99999999999999999999999999999986 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876 288 CFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++++.|.+.
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999988654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.5e-52 Score=369.26 Aligned_cols=317 Identities=16% Similarity=0.266 Sum_probs=189.1
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (349)
++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|
T Consensus 134 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 134 IALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHH
Confidence 4556666666666666666666676677777777777777777777776664 35666777777777777777777
Q ss_pred HHHHHHHHhCCCCCchHHH-----------------------------------HHHHHHHhccCchHHHHHHHHHHhcc
Q 018876 83 QALLSDMSTQGIRPNTVTY-----------------------------------NTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.++|++|.+.|+.|+..+| +.|+.+|++.|++++|.++|++|.
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 286 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-- 286 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 7777777666655555544 444555555555555555555553
Q ss_pred CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 018876 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207 (349)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (349)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+
T Consensus 287 --~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 287 --EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred --CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 335555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 55555555555555555555553 24555555555555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHccCchhhhHHHHH
Q 018876 288 CFAEMKGVLEVMQQ-RGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 288 ~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
..++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|+.++|.++++
T Consensus 441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 55555555555543 3555555555555555555555555555443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.1e-52 Score=370.97 Aligned_cols=323 Identities=19% Similarity=0.294 Sum_probs=291.5
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCC------------------------
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP------------------------ 57 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------ 57 (349)
|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 5667777777777777753 567777777777777777777777777775542
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876 58 ----------DCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 58 ----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
++.||..+|+.++.+|++.|++++|.++|++|. .+|..+||.++.+|++.|++++|.++|++|.+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 334566667888889999999999999999986 458999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 018876 128 DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYN 207 (349)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 207 (349)
|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|.+ ||..+||
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999964 6899999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh-CCCCchHHHHHHHHHHHHcc
Q 018876 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN-SDIMLDTVFFNCLVDAYGRL 286 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~ 286 (349)
.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .++.|+..+|+.++.+|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999975 69999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 287 KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 287 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
|++++|.+++++| ++.|+..+|+.++.+|...|+.+.|.++++.+.++.+
T Consensus 476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 9999999998765 6789999999999999999999999999998877654
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-50 Score=370.57 Aligned_cols=218 Identities=17% Similarity=0.244 Sum_probs=125.2
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
|+++|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|... ++.||..+|+.++.+|++.|+.+.
T Consensus 232 y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHH
Confidence 4566666666666666642 45566666666666666666666666666654 446666666666666666666666
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666555554 34555555555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 018876 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5555555555555555555555555555555555555444444444444444444444444444433
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.9e-50 Score=364.27 Aligned_cols=324 Identities=19% Similarity=0.215 Sum_probs=236.2
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+++.|.+++..+.+. ++.||..+|+.++.+|++.|++++
T Consensus 263 ~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHH
Confidence 5678899999999999988888888888888888888888888888888888776 567888888888888888888888
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+
T Consensus 342 A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 888888775 3577788888888888888888888888888778888888888888888888888888888888888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh----------
Q 018876 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS---------- 231 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------- 231 (349)
.|+.|+..+|+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|..
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~ 493 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLI 493 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHH
Confidence 77777777777777777777777777777776643 2333344444333333333333333333321
Q ss_pred ------------------------CC------------------------------CCCcHHHHHHHHHHHHhcCChhhH
Q 018876 232 ------------------------ER------------------------------IKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 232 ------------------------~~------------------------------~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
.| ..||..+|++++.+|++.|+.++|
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHH
Confidence 11 134566777777777777777777
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHH
Q 018876 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ-QRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (349)
.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++.+|.+.|+.++|.++++.+
T Consensus 574 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 7777777777777777777777777777777777777777776 4567777777777777777777777777666654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.6e-24 Score=202.24 Aligned_cols=320 Identities=13% Similarity=0.014 Sum_probs=194.7
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 83 (349)
+.|++++|.++++.+.+.. +.+...|..+..++...|++++|...|+.+.+.. +.+...+..+..++...|++++|.
T Consensus 579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHH
Confidence 4455555555555554432 3344555555555555555555555555555432 234445555555555555555555
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018876 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
..++++.+.. +.+..++..+...+...|++++|.++++.+.... +.+...+..+...+...|++++|.+.+..+...+
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 5555555442 2234555555555555666666666665555443 3344555555666666666666666666666543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018876 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
|+..++..+..++.+.|++++|...++.+.+..+ .+...+..+...+...|++++|...|+++.+.. +.+..++..
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 809 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNN 809 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3334555566666666666666666666665542 356666666666777777777777777766554 455666666
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCc
Q 018876 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
+...+...|+ .+|...++.+.+..+ -++.++..+...+...|++++|...++++.+.+.. +..++..+..++.+.|+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCC
Confidence 6777777777 567777776665432 24556666777777777888888888777776543 67777777777888888
Q ss_pred hhhhHHHHHHHH
Q 018876 324 KNHAKEFQDLVE 335 (349)
Q Consensus 324 ~~~a~~~~~~~~ 335 (349)
+++|.+.++.+.
T Consensus 887 ~~~A~~~~~~~~ 898 (899)
T TIGR02917 887 KAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHh
Confidence 888877777653
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=2.8e-24 Score=181.25 Aligned_cols=295 Identities=11% Similarity=0.051 Sum_probs=182.9
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc---hHHHHHHHHHHhc
Q 018876 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN---TVTYNTLIDAYGR 110 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 110 (349)
...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334556677777777777776652 34455666666777777777777777777665432111 2345666667777
Q ss_pred cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHH
Q 018876 111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS----INTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 186 (349)
.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777776543 34556666677777777777777777777666543221 1234455566666777777
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
|...++++.+... .+...+..+...+.+.|++++|..+++++.+.+......++..++.++...|++++|...++.+.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777665542 245556666667777777777777777766543222234566666777777777777777777665
Q ss_pred CCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc---cCchhhhHHHHHHHHH
Q 018876 267 SDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST---NGMKNHAKEFQDLVEK 336 (349)
Q Consensus 267 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 336 (349)
.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++...++.+.+
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 43 34444566677777777777777777766655 4666666666665543 3456666665555544
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=2e-23 Score=194.84 Aligned_cols=324 Identities=14% Similarity=-0.001 Sum_probs=142.9
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 83 (349)
+.|++++|.++++.+... .+++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.
T Consensus 443 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred hcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555555443 23344455555555555555555555555544432 223333444444444444444444
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC---------------------------------CC
Q 018876 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED---------------------------------CE 130 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~ 130 (349)
+.++++...+ +.+..++..+...+.+.|+.++|...++++...+ .+
T Consensus 520 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 520 QRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 4444444332 1233333334444444444444444443333221 12
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 018876 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
.+...|..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+ .+..++..++
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 233344444444444444444444444444332 12333344444444444444444444444443321 1334444444
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018876 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++.+.... |+..++..++..+.+.|+++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 44444444444444444443332 2333444444444445555555555555444432 22233444444455555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876 291 EMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 291 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
+|.+.++.+.+.. +.+...+..+...|...|++++|.+.++.+.+.
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 5555555544432 224444555555555555555555555554443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=3.8e-23 Score=174.35 Aligned_cols=309 Identities=17% Similarity=0.136 Sum_probs=257.1
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHhcCChh
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP--DVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 80 (349)
...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+...+ ....+..+...+.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 45789999999999999874 45677899999999999999999999999987632111 1356788899999999999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcc----hhhHHHHHHHHHccCCHHHHHHHH
Q 018876 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD----VWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
+|..+|+++.+.. +++..+++.++..+...|++++|.+.++.+.+.+..+. ...+..+...+...|++++|.+.+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998863 45778899999999999999999999999987653332 224556777888999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 018876 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (349)
+++.+.. +.+...+..+...+.+.|++++|...++++.+.+......+++.++.+|...|++++|...++.+.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9998864 34567788889999999999999999999987654434567889999999999999999999999876 45
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc---cCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 018876 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR---LKCFAEMKGVLEVMQQRGCKPDKVTYRT 313 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 313 (349)
+...+..++..+.+.|++++|..+++.+.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~---- 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR---- 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC----
Confidence 6666788999999999999999999998876 4788888888888775 568999999999999988888776
Q ss_pred HHHHHHccCch
Q 018876 314 MVRAYSTNGMK 324 (349)
Q Consensus 314 l~~~~~~~g~~ 324 (349)
..|.++|..
T Consensus 355 --~~c~~cg~~ 363 (389)
T PRK11788 355 --YRCRNCGFT 363 (389)
T ss_pred --EECCCCCCC
Confidence 346666643
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=1.8e-21 Score=172.15 Aligned_cols=328 Identities=9% Similarity=-0.025 Sum_probs=269.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (349)
.+.|++++|..+++...... +-+...+..++.+....|+++.|...|+++.... +.+...+..+...+...|++++|
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999998863 4556677777788888999999999999999874 55677888899999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
...++++.... +.+...+..+..++...|++++|...++++...... +...+..+ ..+...|++++|...++.+.+.
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 99999998863 346778888999999999999999999988766422 23333333 3478899999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCcH
Q 018876 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ----MEYLFRLMRSERIKPSC 238 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~ 238 (349)
...++...+..+...+...|++++|...++++...... +...+..+...+...|++++ |...+++..+.. +.+.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~ 284 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNV 284 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCH
Confidence 54445555566677889999999999999999887643 67888889999999999986 899999988764 4567
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHH
Q 018876 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK-VTYRTMVRA 317 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~ 317 (349)
..+..+...+...|++++|...++.+....+. +...+..+..++.+.|++++|...++.+... .|+. ..+..+..+
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~a 361 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 78899999999999999999999999887643 5667788899999999999999999999876 3444 334445678
Q ss_pred HHccCchhhhHHHHHHHHHhHHhh
Q 018876 318 YSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
+...|+.++|...++...+..+..
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhh
Confidence 899999999999999887776543
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=6.4e-20 Score=162.72 Aligned_cols=330 Identities=10% Similarity=-0.016 Sum_probs=218.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 34578888888888888765 4677778888888888888888888888887763 4456677777777777777777
Q ss_pred HHHHHHH-------------------------------------------------------------------------
Q 018876 82 VQALLSD------------------------------------------------------------------------- 88 (349)
Q Consensus 82 a~~~~~~------------------------------------------------------------------------- 88 (349)
|...|..
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 6543322
Q ss_pred ---------------------------HHhCC-CCC-chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHH
Q 018876 89 ---------------------------MSTQG-IRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT 139 (349)
Q Consensus 89 ---------------------------~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (349)
....+ ..| ....++.+...+...|++++|...+++..... +.....|..+
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~l 371 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKR 371 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 22111 011 12234444455555666666766666666542 2234456666
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 018876 140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL 219 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (349)
...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+..+. +...+..+...+.+.|++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCH
Confidence 666677777777777777766653 335666777777777777777777777777665432 456666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH------HHHHHHHHHHccCChHHHH
Q 018876 220 KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV------FFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~a~ 293 (349)
++|...++...... +.+...++.+...+...|++++|...++.........+.. .++..+..+...|++++|.
T Consensus 450 ~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 450 ASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 78877777776542 3445677777777778888888888887776643221111 1222223334467888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876 294 GVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 294 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.++++...... .+...+..+...+.+.|++++|.++++...++.++
T Consensus 529 ~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 529 NLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 88888776642 24456788888899999999999988887776553
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.7e-19 Score=159.63 Aligned_cols=292 Identities=10% Similarity=0.014 Sum_probs=241.8
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (349)
...|++++|.+.|+++.+.. |.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|
T Consensus 87 l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHH
Confidence 45899999999999999874 5567889999999999999999999999998863 45677888999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
...++.+...... +...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++++.+.
T Consensus 164 ~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 164 ISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999988776432 33334333 347889999999999999887653344455556677889999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018876 163 GIQPSINTFNILLDSYGKAGHFEK----MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (349)
. +.+...+..+...+...|++++ |...+++..+..+. +...+..+...+...|++++|...+++..+.. +.+.
T Consensus 242 ~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~ 318 (656)
T PRK15174 242 G-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLP 318 (656)
T ss_pred C-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 5 4467888889999999999986 89999999887644 77889999999999999999999999998764 4456
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 303 (349)
..+..+..++...|++++|...++.+...++. +...+..+..++...|++++|...|++..+..
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 67788889999999999999999999876532 23344556778999999999999999998773
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=2.3e-18 Score=162.52 Aligned_cols=328 Identities=13% Similarity=0.045 Sum_probs=212.9
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH------------HHH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS------------ILI 70 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l~ 70 (349)
...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.....++...|. ...
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 45799999999999998864 45788899999999999999999999999887632222222221 224
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHH------------
Q 018876 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC------------ 138 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 138 (349)
..+.+.|++++|...|+++.... +.+...+..+..++...|++++|.+.|+++.+.. +.+...+..
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHH
Confidence 46678899999999999998874 3456677788899999999999999999988653 222222222
Q ss_pred ------------------------------HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018876 139 ------------------------------TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 139 ------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (349)
+...+...|++++|.+.+++..+.. +-+...+..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2233456788888998888888764 336677778888899999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC------------------------------------
Q 018876 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE------------------------------------ 232 (349)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------------ 232 (349)
..++++.+..+. +...+..+...+...++.++|...++.+...
T Consensus 516 ~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 999888765422 2322222222222333333333332221100
Q ss_pred ---CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHH
Q 018876 233 ---RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 233 ---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 309 (349)
..+.+...+..+...+...|++++|...++.+.+..+ .+...+..++..|...|++++|.+.++...+.. +.+..
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~ 672 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLN 672 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChH
Confidence 0123334455556666666666666666666665543 245566666666666666666666666655432 11344
Q ss_pred HHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876 310 TYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
.+..+..++...|++++|.++++.+.+.
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 4555555666666666666666665543
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=6.8e-18 Score=159.34 Aligned_cols=321 Identities=12% Similarity=0.049 Sum_probs=214.3
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (349)
.+.|++++|++.|++..+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .++.++|
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCHHHH
Confidence 46799999999999999874 4567788889999999999999999999998763 344555555544442 2344555
Q ss_pred HHHHHHHHhCCCC--------CchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHH
Q 018876 83 QALLSDMSTQGIR--------PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK 154 (349)
Q Consensus 83 ~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 154 (349)
..+++.+...... .....+..+...+...|++++|.+.+++..+.. +-+...+..+...|.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444433221000 001122333344444455555555555544432 2233334444444555555555555
Q ss_pred HHHHHHhcCCCCCHHHH--------------------------------------------HHHHHHHHhcCCHHHHHHH
Q 018876 155 CYEKFQSAGIQPSINTF--------------------------------------------NILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~--------------------------------------------~~l~~~~~~~~~~~~a~~~ 190 (349)
.++++.+.. +.+...+ ..+...+...|+.++|..+
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 555544322 1122222 1233445566666667666
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018876 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (349)
++. .+.+...+..+...+.+.|++++|...|+...+.. +.+...+..+...+...|++++|...++.+.+...
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p- 668 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN- 668 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-
Confidence 651 23456677788899999999999999999998765 55678899999999999999999999998887543
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC--C---CHHHHHHHHHHHHccCchhhhHHHHHHHHH
Q 018876 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK--P---DKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.+...+..+..++...|++++|.++++.+...... | +...+..+...+...|++++|...++....
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566777888999999999999999999876322 2 224566677889999999999999998754
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.2e-17 Score=146.67 Aligned_cols=304 Identities=13% Similarity=-0.015 Sum_probs=242.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 018876 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY 108 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (349)
.+......+.+.|++++|+..|++.... .|+...|..+..++.+.|++++|+..++..++.. +.+...+..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3556777889999999999999999876 5788899999999999999999999999999874 33667888899999
Q ss_pred hccCchHHHHHHHHHHhccCC-----------------------------CcchhhHHHHHH------------------
Q 018876 109 GRAKMFAEMELTLVKMLSEDC-----------------------------EPDVWTMNCTLR------------------ 141 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~------------------ 141 (349)
...|++++|...+......+. +++...+..+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 999999999876544321110 010001110000
Q ss_pred ------------H------HHccCCHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018876 142 ------------A------FGNSGQIDTMEKCYEKFQSAG-I-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW 201 (349)
Q Consensus 142 ------------~------~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (349)
. ....+++++|.+.|+...+.+ . +.....+..+...+...|++++|...+++..+..+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~- 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR- 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Confidence 0 012357888999999988764 2 234566788888889999999999999999887533
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018876 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
....|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++...+..+ .+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHH
Confidence 46788888999999999999999999998764 45678889999999999999999999999988764 36777888999
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876 282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
++.+.|++++|...+++..+.. +.+...+..+..++...|++++|.+.++...++.+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 9999999999999999998763 235788899999999999999999999998877543
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=8.9e-19 Score=144.05 Aligned_cols=325 Identities=12% Similarity=0.097 Sum_probs=217.0
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHH-HHHHHHhcCChhH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI-LIKSCLKAFAFDK 81 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ 81 (349)
-..|++++|+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+..+. .|+.....+ +...+...|+..+
T Consensus 127 kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccch
Confidence 35788999999999998873 446888999999999999999998888887765 344433222 2222333445555
Q ss_pred HHHHHHHHHhCC--------------------------------CCCc-hHHHHHHHHHHhccCchHHHHHHHHHHhccC
Q 018876 82 VQALLSDMSTQG--------------------------------IRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 82 a~~~~~~~~~~~--------------------------------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
|...+.+.++.. +.|+ ...|-.|...|...+.++.|...|.+.....
T Consensus 203 a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 554444444331 1121 2344445555555555555555555544332
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 018876 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI 208 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (349)
+.....+..+...|...|.++.|+..|++..+.. +.=...|+.|..++-..|++.+|.+.+.+....... .....+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 2234445555555666777777777777776653 223556777888888888888888888777776533 5667777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch-HHHHHHHHHHHHccC
Q 018876 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD-TVFFNCLVDAYGRLK 287 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 287 (349)
|...+...|.++.|..+|....+.. +--....+.|...|-.+|++++|...+++..... |+ ...|+.+...|-..|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--PTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--chHHHHHHhcchHHHHhh
Confidence 8888888888888888887776542 2224567777778888888888888888877643 33 457777888888888
Q ss_pred ChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 288 CFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+.+.|...+.+.+.. .|. ...++.|...|..+|+..+|+..++...++++
T Consensus 437 ~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred hHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 888888888877765 343 46677888888888888888888887777654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=7.9e-17 Score=145.80 Aligned_cols=327 Identities=10% Similarity=-0.012 Sum_probs=182.8
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (349)
.+.|++++|.+++++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|
T Consensus 60 ~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~A 135 (765)
T PRK10049 60 RNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDE 135 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHH
Confidence 34566666666666666542 3445555666666666666777766666666542 33444 65666666666677777
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHH----------------------------------------
Q 018876 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV---------------------------------------- 122 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------------- 122 (349)
...++++.+.. +-+...+..+..++...+..+.|++.++
T Consensus 136 l~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 136 LRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 77666666653 2233333444444444444433333222
Q ss_pred ------HHhcc-CCCcchh-hHH----HHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 018876 123 ------KMLSE-DCEPDVW-TMN----CTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 123 ------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 189 (349)
.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+. ....+...+...|++++|..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 22211 0011110 000 0122334556677777777776665422 221 12224556667777777777
Q ss_pred HHHHHHhcCCCC---chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCc---HHHHHHHHHHHHhcC
Q 018876 190 VMEYMQKYHYSW---TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-----------KPS---CVTLCSLVRAYGHAG 252 (349)
Q Consensus 190 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~ 252 (349)
.|+++.+..... .......+..++...|++++|..+++.+..... .|+ ...+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 777665443211 123344555566677777777777776654321 112 123445556666777
Q ss_pred ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCchhhhHHHH
Q 018876 253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
+.++|+..++.+....+ -+...+..+...+...|++++|++.+++..... |+ ...+......+...|++++|...+
T Consensus 374 ~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 374 DLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777777777766543 356667777777777777777777777777653 33 455556666677777777777777
Q ss_pred HHHHHhH
Q 018876 332 DLVEKMD 338 (349)
Q Consensus 332 ~~~~~~~ 338 (349)
+.+.+..
T Consensus 451 ~~ll~~~ 457 (765)
T PRK10049 451 DDVVARE 457 (765)
T ss_pred HHHHHhC
Confidence 7666543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.4e-16 Score=144.29 Aligned_cols=330 Identities=9% Similarity=0.008 Sum_probs=245.8
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (349)
...|+.++|++++....... +.+...+..+...+...|++++|.++|++..+.. +.+...+..+...+...|++++|
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45799999999999998742 4566679999999999999999999999988763 55677788888999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHH--------
Q 018876 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK-------- 154 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-------- 154 (349)
...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|++
T Consensus 103 ~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~ 179 (765)
T PRK10049 103 LVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLT 179 (765)
T ss_pred HHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence 99999998873 34556 8888899999999999999999999874 3344444555555555555554443
Q ss_pred --------------------------------------HHHHHHhc-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHH
Q 018876 155 --------------------------------------CYEKFQSA-GIQPSIN-TFN----ILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 155 --------------------------------------~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~ 190 (349)
.++.+.+. ...|+.. .+. ..+..+...|++++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33343322 1122211 111 113345677899999999
Q ss_pred HHHHHhcCCC-CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876 191 MEYMQKYHYS-WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP---SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
|+.+.+.+.+ |+. ....+..++...|++++|...|+.+.+..... .......+..++...|++++|...++.+..
T Consensus 260 ~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 260 YQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred HHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 9999887532 322 22225678899999999999999987643111 134556677788999999999999998876
Q ss_pred CCC-----------Cch---HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHH
Q 018876 267 SDI-----------MLD---TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQD 332 (349)
Q Consensus 267 ~~~-----------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (349)
..+ .|+ ...+..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.++
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 532 122 2355677888999999999999999998873 3367888899999999999999999999
Q ss_pred HHHHhHHh
Q 018876 333 LVEKMDET 340 (349)
Q Consensus 333 ~~~~~~~~ 340 (349)
...+..+.
T Consensus 418 ~al~l~Pd 425 (765)
T PRK10049 418 KAEVLEPR 425 (765)
T ss_pred HHHhhCCC
Confidence 88887653
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-17 Score=137.21 Aligned_cols=303 Identities=14% Similarity=0.107 Sum_probs=254.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 83 (349)
..|++++|...+.+..+.. +--..+|..|...+-.+|++..|+.-|++..+.+ +.-...|-.|...|...+.+++|.
T Consensus 196 a~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred hhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHH
Confidence 4688888888888877762 3346679999999999999999999999998763 233578999999999999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018876 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
..+.+..... +-....+..+...|...|..+.|+..|++.++.. +.-...|+.+..++-..|+..+|.+.|.+.....
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 9999988763 3356678888889999999999999999999764 3336789999999999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHH
Q 018876 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLC 242 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 242 (349)
+......+.|...+...|.+++|..+|....+..+. -....+.|...|-+.|++++|+..+++.+.. .|+ ...|+
T Consensus 351 -p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~ 426 (966)
T KOG4626|consen 351 -PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALS 426 (966)
T ss_pred -CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHH
Confidence 335677889999999999999999999998876533 4677899999999999999999999998764 555 57899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q 018876 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRTMVRAY 318 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 318 (349)
.+...|-..|+.+.|.+.+.+.+..++. -...++.|...|-..|+..+|+.-++...+. +|| +..|..++.+.
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 9999999999999999999999886542 3567888999999999999999999999876 565 44555565554
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=5.6e-15 Score=131.99 Aligned_cols=169 Identities=9% Similarity=0.033 Sum_probs=112.5
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCch-hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANT-QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (349)
..+.|+++.|++.|++..+.. |+. .....++..+...|+.++|+..+++.... .+........+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHH
Confidence 357888999999999888763 443 22227777788888888888888888722 1333444444466778888888
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018876 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
+|.++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8888888888874 335666667778888888888888888888765 4444445444444444555555777777777
Q ss_pred hcCCCCCHHHHHHHHHHH
Q 018876 161 SAGIQPSINTFNILLDSY 178 (349)
Q Consensus 161 ~~~~~~~~~~~~~l~~~~ 178 (349)
+.. +.+...+..++.++
T Consensus 197 ~~~-P~n~e~~~~~~~~l 213 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEIL 213 (822)
T ss_pred HhC-CCCHHHHHHHHHHH
Confidence 653 22344433333333
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=3.7e-15 Score=135.80 Aligned_cols=267 Identities=9% Similarity=-0.048 Sum_probs=147.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHH
Q 018876 62 DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLR 141 (349)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (349)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44555555555554 5666666655555544 244333333334444666666666666665443 233333444555
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 018876 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
.+.+.|+.++|...+++..+.. +.+...+..+.......|++++|...+++..+.. |+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 5666666666666666666543 2222223233333334466666666666666543 345566666666666666666
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
|...+++..+.. +.+...+..+..++...|++++|...++...+..+ -+...+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666666666543 33445555566666666666666666666665543 2455666666666666666666666666665
Q ss_pred cCCCCCH-HHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876 302 RGCKPDK-VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 302 ~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.. |+. .+.........+..+++.+.+.+++...++..
T Consensus 706 l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 706 DI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred cC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 42 322 33334444444555555555555555544443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=7.9e-15 Score=131.04 Aligned_cols=328 Identities=11% Similarity=0.033 Sum_probs=200.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 83 (349)
..|++++|+++|+++.+.. |.++..+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|+
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHH
Confidence 4577777777777777663 344556666666677777777777777777655 355444533433333345554577
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHH------------------------------------------
Q 018876 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL------------------------------------------ 121 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------------------------------------ 121 (349)
+.++++.+.. +-+...+..++.++.+.|-...|.++.
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 7777777663 224444455555554444333333222
Q ss_pred ------HHHhcc-CCCcch-h----hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018876 122 ------VKMLSE-DCEPDV-W----TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 122 ------~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (349)
+.+... +..|.. . ...-.+.++...++..++++.|+.+...+.+....+-..+.++|...+++++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 222211 011211 1 1122344566677777777778777777755555567777788888888888888
Q ss_pred HHHHHHhcCC-----CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------------CCcH-HHHHHHHHHHHh
Q 018876 190 VMEYMQKYHY-----SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-------------KPSC-VTLCSLVRAYGH 250 (349)
Q Consensus 190 ~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~ 250 (349)
+++.+..... +++......|..++...+++++|..+++.+.+... .||- ..+..++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 8877755331 22333346677777788888888888887765211 1111 223345566777
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHH
Q 018876 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
.|+..+|++.++.+....+ -|......+...+...|.+..|...++...... +-+..+......++...|++++|..+
T Consensus 429 ~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 7888888888888766553 477777778888888888888888886666552 22455666777777777888888777
Q ss_pred HHHHHHhH
Q 018876 331 QDLVEKMD 338 (349)
Q Consensus 331 ~~~~~~~~ 338 (349)
.+.+....
T Consensus 507 ~~~l~~~~ 514 (822)
T PRK14574 507 TDDVISRS 514 (822)
T ss_pred HHHHHhhC
Confidence 76554443
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=4.9e-15 Score=124.16 Aligned_cols=287 Identities=10% Similarity=0.027 Sum_probs=222.1
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHH--HHHHHHhccCchH
Q 018876 39 RSGLFDKAFSLLEHMKNTPDCQPDVNT-YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN--TLIDAYGRAKMFA 115 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 115 (349)
..|+++.|.+.+....+.. +++.. |.....+..+.|+++.+...+.++.+. .|+..... .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 3699999998888766542 23333 333455558899999999999999875 45554333 3367888999999
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 018876 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI-------NTFNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 188 (349)
.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999998876 556778888999999999999999999999988655322 12333444444555666777
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
++++.+.+.- +.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++++++.+..+...+..
T Consensus 250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 7777665432 347888889999999999999999999998873 4555332 2334445699999999999988776
Q ss_pred CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 269 IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+ -|+..+..+...+.+.|++++|.+.|+...+. .|+..++..+..++.+.|+.++|.+.++.-..+..
T Consensus 325 P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 325 G-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4 37778889999999999999999999999986 68999999999999999999999999987665543
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=6.7e-15 Score=116.42 Aligned_cols=308 Identities=12% Similarity=0.139 Sum_probs=187.1
Q ss_pred CCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHH
Q 018876 24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT 103 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (349)
+.+..++..+|.++++--..++|.+++++-....+ +.+..+||.+|.+-.-..+ .+++.+|....+.||..|||.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG-KVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 44677888888888888888888888888777644 7788888888766544332 677888888888888888888
Q ss_pred HHHHHhccCchHH----HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHH-HHHHHHHHHhc----CC----CCCHHH
Q 018876 104 LIDAYGRAKMFAE----MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT-MEKCYEKFQSA----GI----QPSINT 170 (349)
Q Consensus 104 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~ 170 (349)
++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ +..++..+... .+ +.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 8888888887654 45667777788888888888888888887777644 34444443321 11 124445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH------------------------------------------HhcCCCCchHHHHH
Q 018876 171 FNILLDSYGKAGHFEKMSAVMEYM------------------------------------------QKYHYSWTIVTYNI 208 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~------------------------------------------~~~~~~~~~~~~~~ 208 (349)
|...+..|.+..+.+-|.++..-+ ...-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 555666666666666555554433 22223334444444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC-Ch---hh----------HHHHHH-------HHhhC
Q 018876 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAG-KP---EK----------LGSVLR-------FIDNS 267 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---~~----------a~~~~~-------~~~~~ 267 (349)
++++....|+++-.-++|.+++..|..-.......++..+++.. .+ +. |..+++ ++..
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~- 517 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA- 517 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-
Confidence 44444445555555555555554443333333223333333222 11 00 001110 1111
Q ss_pred CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876 268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC----KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
........+.+.-.+.+.|+.++|.+++..+.+.+- .|......-++..-.+.+.+..|...++.+...+
T Consensus 518 -~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 518 -QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred -ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 122345566777778888999999998888865532 2333344466667777888888888888775443
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=3.1e-14 Score=129.87 Aligned_cols=324 Identities=14% Similarity=0.049 Sum_probs=244.0
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHhcCC---hh
Q 018876 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT-PDCQPDVNTYSILIKSCLKAFA---FD 80 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~---~~ 80 (349)
.+...++.+.+..|.+.. +-+......+.-...+.|+.++|.++|+..... +...++......++..+.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 456667777777777652 446677777777788999999999999988762 2223444455567777776655 23
Q ss_pred HHHHH----------------------HHHHHhC-CC-CC--chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchh
Q 018876 81 KVQAL----------------------LSDMSTQ-GI-RP--NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW 134 (349)
Q Consensus 81 ~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 134 (349)
++..+ .+..... +. ++ +...|..+..++.. ++.++|...+.+.... .|+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 33222 2222111 11 33 56778888877776 7888999988888765 45554
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 018876 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (349)
....+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|...++...+..+. +...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHH
Confidence 4444455557899999999999998665 444455667778889999999999999999887532 3344444444455
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH
Q 018876 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
..|++++|...+++..+. .|+...+..+..++.+.|++++|...++......+. +...++.+..++...|++++|..
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999999875 456888999999999999999999999999988653 67788899999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 295 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.+++..+... -+...+..+..++...|++++|...++...+..+
T Consensus 665 ~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 665 MLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999998743 3678899999999999999999999999887765
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.77 E-value=8.6e-15 Score=122.73 Aligned_cols=284 Identities=10% Similarity=0.012 Sum_probs=221.1
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHH-HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH--HHHHHHHhcCChhH
Q 018876 5 CKQPEKAHELFQAMVDEGCDANTQSFTAL-LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS--ILIKSCLKAFAFDK 81 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 81 (349)
.|++++|.+.+....+.. +++..+..+ ..+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHH
Confidence 599999998888766642 233333333 44458999999999999999876 46654333 33678889999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcch-------hhHHHHHHHHHccCCHHHHHH
Q 018876 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV-------WTMNCTLRAFGNSGQIDTMEK 154 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 154 (349)
|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999885 447788889999999999999999999999987644322 233334444445556677777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018876 155 CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
+++.+.+. .+.+......+...+...|+.++|..++++..+.. |+.... ++.+....++.+++.+..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence 77776544 35578888999999999999999999999988743 444322 2334446699999999999988664
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
+-|......+.+.|...+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|..++++-...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556677889999999999999999999999986 478888889999999999999999999977543
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=6.1e-18 Score=135.58 Aligned_cols=262 Identities=15% Similarity=0.082 Sum_probs=83.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 018876 32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA 111 (349)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (349)
.+...+.+.|++++|+++++........+.|...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466666777777777777443322100234444555555566667777777777777665432 45555555555 566
Q ss_pred CchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018876 112 KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-IQPSINTFNILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (349)
+++++|.+++....+. .++...+...+..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777776665544 2444555666666677777777777776655432 234556666666666777777777777
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018876 191 MEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (349)
+++..+..+. +......++..+...|+.+++..++....... +.++..+..+..++...|+.++|...++...+..+
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p- 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP- 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-
Confidence 7776665432 45666666666666777666666666655443 34445556666666677777777777766665442
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 018876 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 300 (349)
.|+.....+..++...|+.++|.++.++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 356666666666777777777766665543
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=9.4e-15 Score=123.15 Aligned_cols=297 Identities=10% Similarity=-0.025 Sum_probs=214.9
Q ss_pred HHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch--HHHHHHH
Q 018876 31 TALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLI 105 (349)
Q Consensus 31 ~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 105 (349)
..+..+ ....|+++.|.+.+.+..+. .|+. ..+-....+....|+++.|.+.+.+..+.. |+. .......
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a 160 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHH
Confidence 334444 34679999999999888765 3543 444555677888999999999999987753 443 3444457
Q ss_pred HHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcC
Q 018876 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY---GKAG 182 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~ 182 (349)
..+...|+++.|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.+..+.......-..++ ...+
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999876 4566788899999999999999999999999987543332212111221 2223
Q ss_pred CHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH---HHHHHHHHHhcCChhh
Q 018876 183 HFEKMSAVMEYMQKYHY---SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT---LCSLVRAYGHAGKPEK 256 (349)
Q Consensus 183 ~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ 256 (349)
..+.....+..+.+..+ +.++..+..+...+...|+.++|.+++++..+.. |+... ...........++.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHH
Confidence 33333344444444332 1378888899999999999999999999998764 33321 1111122234577888
Q ss_pred HHHHHHHHhhCCCCchH--HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHH
Q 018876 257 LGSVLRFIDNSDIMLDT--VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (349)
+.+.++...+..+ -|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++..
T Consensus 318 ~~~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888776543 244 6777899999999999999999996444445789988999999999999999999999865
Q ss_pred HH
Q 018876 335 EK 336 (349)
Q Consensus 335 ~~ 336 (349)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 43
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=7.9e-18 Score=134.95 Aligned_cols=258 Identities=14% Similarity=0.091 Sum_probs=115.2
Q ss_pred CCCCCCChHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh
Q 018876 1 MLGKCKQPEKAHELFQAMVDEG-CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF 79 (349)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (349)
++.+.|++++|.++++...... .+.+...|..+.......++++.|.+.++++...+ +-+...+..++.. ...+++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cccccc
Confidence 3567899999999997655443 24456666777777888999999999999998874 3456667777777 789999
Q ss_pred hHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC-CCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 018876 80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (349)
++|.+++....+. .++...+..++..+.+.++++++..+++++.... .+.+...|..+...+.+.|+.++|++.+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887665 3567778888999999999999999999977542 356778888899999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018876 159 FQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (349)
..+.. +.|......++..+...|+.+++..++....+.. +.++..+..+..++...|+.++|...+++..... +.|+
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 99874 3368888899999999999999999998887765 4467788899999999999999999999988754 5688
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
.....+..++...|+.++|.++...+..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 8889999999999999999998877643
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=1.8e-14 Score=121.44 Aligned_cols=291 Identities=11% Similarity=-0.021 Sum_probs=212.6
Q ss_pred CCCChHHHHHHHHHHHhcCCCCch-hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChh
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANT-QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV--NTYSILIKSCLKAFAFD 80 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 80 (349)
..|+++.|.+.+.+..+. .|+. ..+-....+..+.|+++.|.+.+.+..+. .|+. .........+...|+++
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHH
Confidence 579999999999988776 3443 33445567788899999999999998765 3443 34444578888999999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHH---HccCCHHHHHHHHH
Q 018876 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF---GNSGQIDTMEKCYE 157 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~ 157 (349)
.|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..+.......-..++ ...+..+++.+.+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999985 3367788899999999999999999999999886443322211111111 22223333333444
Q ss_pred HHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH-HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876 158 KFQSAGI---QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY-NIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 158 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
.+.+... +.+...+..+...+...|+.++|..++++..+..+......+ ..........++.+.+.+.++...+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4444321 237888999999999999999999999999887543222111 222222344577888888888877653
Q ss_pred CCCcH--HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876 234 IKPSC--VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 234 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
+-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344 567789999999999999999999654444567888888999999999999999999998644
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.9e-14 Score=112.20 Aligned_cols=315 Identities=13% Similarity=0.168 Sum_probs=223.6
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHH--HHcCCChh-HHHHHHHHhhcCC------------------CCCCC
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSA--YGRSGLFD-KAFSLLEHMKNTP------------------DCQPD 62 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~-~a~~~~~~~~~~~------------------~~~~~ 62 (349)
.+|.+..+.-+++.|.+.|++.+...-..|+.. |..+.+.- .-++.|-.|.+.+ ..+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 467788888899999999888777776666554 22222221 1223333333221 12456
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018876 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
..+|.++|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|......||..|+|.++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 67888999999998888999999988888777888889998886644332 25678888888889999999999999
Q ss_pred HHccCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----cCCCC----chHHHHHH
Q 018876 143 FGNSGQIDT----MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK-MSAVMEYMQK----YHYSW----TIVTYNIV 209 (349)
Q Consensus 143 ~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l 209 (349)
..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++| |...|...
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 999997765 56778888899999999999999988888877644 4444444432 22222 44556667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876 210 IDAFGRAGDLKQMEYLFRLMRSE----RIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
+..|.+..+.+-|..+..-+... -+.|+ ..-|..+....|.....+.....++.+.-.-.-|+..+...++++
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 77777888888888877665432 12333 233556667777778888888888888877667888888888888
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 018876 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
..-.|.++-..++|.+++..|..-+...-.-++..+++.+
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 8889999999999998888875555555555555555544
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=6e-14 Score=107.06 Aligned_cols=292 Identities=15% Similarity=0.090 Sum_probs=223.6
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch------HHHHHHHHHHhccC
Q 018876 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT------VTYNTLIDAYGRAK 112 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~ 112 (349)
-+++.++|.++|-+|.+.+ +.+..+--+|.+.+-+.|..++|+.+...+.++ ||. ...-.|..-|...|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 4577899999999998753 456667778889999999999999999998876 332 23344666788889
Q ss_pred chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 018876 113 MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS----INTFNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~ 188 (349)
-++.|+++|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+++.|.
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999998865 34455678899999999999999999999888765543 345677777777888999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
.++.+..+.+.+ .+..--.+.+.....|+++.|.+.++...+.+...-..+...+..+|...|++++...++..+.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999999887644 5666666778889999999999999999888766667788889999999999999999999888764
Q ss_pred CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhh
Q 018876 269 IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETC 341 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (349)
..+ ..-..+-..-....-.+.|...+.+-... +|+...+..++..-...+....+.+-+..+++|-...
T Consensus 280 ~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 280 TGA--DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred CCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 433 33334444444444556666666555554 6899999999998766665555666666666665443
No 34
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.73 E-value=2.3e-13 Score=106.89 Aligned_cols=294 Identities=14% Similarity=0.111 Sum_probs=199.7
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHH
Q 018876 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 118 (349)
..|++.+|.++..+-.+.+ ......|..-..+.-..|+.+.+-.++.+..+..-.++....-...+.....|+...|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 3577777777777766553 23344555666667777777777777777776533455556666667777777777777
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 018876 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSI-------NTFNILLDSYGKAGHFEKMSAVM 191 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 191 (349)
.-++++.+.+ +..........++|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 7777777665 445566677777777888888888887777777654432 35666666666555555555556
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 018876 192 EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML 271 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (349)
+..... ..-++..-..++.-+.+.|+.++|.++..+..+.+..|+ ... .-.+.+.++.+.-.+..+.-.+... -
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~-~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHP-E 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCC-C
Confidence 555433 233566667777778888888888888888777665554 222 2235566777766666665544322 2
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhc
Q 018876 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA 343 (349)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (349)
++..+..|...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|++.+|.+..+....+..++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 5577778888888888888888888866655 678888888888888888888888887777655544443
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=2.1e-13 Score=117.36 Aligned_cols=325 Identities=15% Similarity=0.122 Sum_probs=249.7
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018876 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 84 (349)
+|++++|.+++.++++.. +.+...|..|...|-+.|+.+++...+-...... +.|...|..+.....+.|+++.|.-
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHH
Confidence 499999999999999874 6788899999999999999999999887766543 6678899999999999999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhH----HHHHHHHHccCCHHHHHHHHHHHH
Q 018876 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTM----NCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
.|.+.++.. +++...+---+..|-+.|+...|...|.++.+...+.|..-+ -..++.+...++.+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999884 456666666777899999999999999999987543333222 334556777777788999888876
Q ss_pred hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------CCchHHHHHHHHH
Q 018876 161 SA-GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY---------------------------SWTIVTYNIVIDA 212 (349)
Q Consensus 161 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~ 212 (349)
.. +-..+...++.++..+.+...++.+......+..... .++.... -++-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 63 2234566778888889999999999888877765211 1222221 22233
Q ss_pred HHhcCChHHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018876 213 FGRAGDLKQMEYLFRLMRSER--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
+......+....+........ +.-+...|.-+..++...|++.+|+.++..+......-+...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 344444555555555555555 344567888999999999999999999999988766567889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018876 291 EMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 291 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
+|.+.|+....... -+...-..|...+.+.|+.++|.+.++.+.
T Consensus 467 ~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 467 EAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999987631 244555667777899999999998887643
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.72 E-value=4.3e-13 Score=105.39 Aligned_cols=293 Identities=12% Similarity=0.038 Sum_probs=235.8
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 83 (349)
-.|+|.+|+++..+-.+.+- .....|..-..+.-+.|+.+.+-.++.+..+..+ .++...+-+........|+.+.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHH
Confidence 36999999999999888763 3344566666778889999999999999988744 567777888889999999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcch-------hhHHHHHHHHHccCCHHHHHHHH
Q 018876 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDV-------WTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
.-++++.+.+ +-++........+|.+.|++..+..++.++.+.+.-.+. .+|..++.-....+..+.-...|
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999999886 447788899999999999999999999999999866553 45677777777777777766777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 018876 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (349)
+..... ...++..-..++.-+.++|+.++|.++..+..+.+..|. ... .-.+.+-++...-++..+.-... .+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-HPE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-CCC
Confidence 776554 355677778888899999999999999999998887665 222 22345677777777777665543 244
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 018876 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 307 (349)
++..+.++...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++....-..|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 5588999999999999999999999987775 57999999999999999999999999988775433443
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.3e-13 Score=103.92 Aligned_cols=291 Identities=13% Similarity=0.114 Sum_probs=223.8
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHhcCChhHH
Q 018876 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD--VNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a 82 (349)
..+.++|.++|-+|.+.. +.+..+.-.|...|.+.|..++|+.+.+.+.+.++..-+ ..+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567899999999999853 456677788999999999999999999999987543222 23345567788899999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcc----hhhHHHHHHHHHccCCHHHHHHHHHH
Q 018876 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD----VWTMNCTLRAFGNSGQIDTMEKCYEK 158 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (349)
+.+|..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+..+. ...|..+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999865 33566788899999999999999999998887654433 23355566666778899999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018876 159 FQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (349)
..+.+.+ ....--.+.+.....|+++.|.+.++.+.+.++.--..+...|..+|...|+.++....+..+.+....+
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-- 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-- 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--
Confidence 8887532 4444456678889999999999999999998876667888999999999999999999999988764333
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc---cCChHHHHHHHHHHHhc
Q 018876 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR---LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~ 302 (349)
..-..+.+......-.+.|...+.+-... +|+...+..++..-.. .|...+-+.+++.|...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33444444444455566676666555443 4899999999988654 34566677777877655
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.7e-14 Score=120.06 Aligned_cols=289 Identities=12% Similarity=0.088 Sum_probs=206.7
Q ss_pred ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCchHHHHHHHHHHhccCchHHHHH
Q 018876 42 LFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPNTVTYNTLIDAYGRAKMFAEMEL 119 (349)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 119 (349)
+..+|+..|..+.... .-+..+...+..+|...+++++|+++|+.+.+... .-+..+|...+--+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 4568888888866542 22335556677888888888888888888877521 12556666666443221 1122
Q ss_pred -HHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018876 120 -TLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 120 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
+-+.+.... +-.+.+|..+..+|..+++.+.|++.|++..+.. +-...+|+.+..-+....++|.|...|+......
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 223333322 5567788888888888888888888888888763 2267778777777888888888888888877654
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018876 199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC 278 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (349)
.. +...|--+...|.+.++++.|+-.|+.+.+.+ +-+......+...+-+.|+.++|+++++++...+.+ |+..--.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 32 44555556777888888888888888887765 445666777778888888888899988888877654 5555555
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhc
Q 018876 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLA 343 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (349)
.+..+...+++++|+..++++++. .| +...+..+...|.+.|+.+.|..-+-.+.++++.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 677788888888898888888876 44 4566777778888888888888888888887776543
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.6e-14 Score=120.23 Aligned_cols=292 Identities=12% Similarity=0.017 Sum_probs=228.6
Q ss_pred ChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChhHHHHH
Q 018876 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-QPDVNTYSILIKSCLKAFAFDKVQAL 85 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 85 (349)
+..+|...|..+.++ +.-...+...+..+|...+++++|.++|+.+++..+. ..+...|.+.+.-+-+.-... -+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HH
Confidence 457899999996665 3445567778899999999999999999999886432 246788888876554432211 12
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018876 86 LSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
-+.+.+.. +-.+.+|..+.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+....++|.|...|+..+... +
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 23333332 4477899999999999999999999999999764 3478889988888999999999999999887542 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018876 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
-+-..|.-+.-.|.+.++++.|+-.|+++.+.++. +.+....+...+.+.|+.++|+++++++.... +.|+..--.-+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 23445555677899999999999999999988755 77778888889999999999999999998765 33444444556
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCH
Q 018876 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 308 (349)
..+...+++++|...++++++.-+ -+...|..+...|.+.|+.+.|+.-|--+.+...++..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 677889999999999999998643 36677888999999999999999999988887554433
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.2e-12 Score=104.83 Aligned_cols=255 Identities=10% Similarity=0.022 Sum_probs=178.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCC--cchhhH-----------------
Q 018876 76 AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCE--PDVWTM----------------- 136 (349)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~----------------- 136 (349)
....+++.+-...+...|++-+...-+....+.....++++|+.+|+++.+...- -|..+|
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 3444555555555566666555544455555556667777777777777665310 123333
Q ss_pred --------------HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 018876 137 --------------NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT 202 (349)
Q Consensus 137 --------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 202 (349)
..+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|..-++...+.++. |
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-D 397 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-D 397 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-h
Confidence 333444566677888888888888875 336677888888888888888888888888887644 8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
...|-.+.++|.-.+...-|+-.|++...-. +-|...|.+|.++|.+.++.++|++.|......+- .+...+..|.+.
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakL 475 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKL 475 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHH
Confidence 8888888888888888888888888887654 56778888889999999999999998888887663 366788888888
Q ss_pred HHccCChHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHccCchhhhHHHHHHH
Q 018876 283 YGRLKCFAEMKGVLEVMQQR----GCKPD--KVTYRTMVRAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (349)
|-+.++..+|...|+...+. |...+ .....-|..-+.+.+++++|..+....
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 88888888888888776652 32212 122222444566777777776654443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.5e-12 Score=103.02 Aligned_cols=307 Identities=11% Similarity=0.037 Sum_probs=231.2
Q ss_pred ChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHhcCChhHHHHH
Q 018876 7 QPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQ-PDVNTYSILIKSCLKAFAFDKVQAL 85 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 85 (349)
+.+++.+=.+.+.+.|++.+...-+....+.-...+++.|+.+|+++.+..+.. .|..+|+.++-. +..+-.- ..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~skL--s~ 317 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSKL--SY 317 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHHH--HH
Confidence 556777777788888887777777777777788899999999999999875332 356778877744 3322221 11
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018876 86 LSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
+.+-...=-+--+.|...+.+-|.-.++.++|...|++..+.+ +.....|+.+..-|....+...|.+-++..++.. +
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p 395 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-P 395 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-c
Confidence 1111111012244577788888988999999999999999876 5567789999999999999999999999999875 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018876 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
.|-..|-.+.++|.-.+.+.-|+-.|++.....+ .|...|.+|..+|.+.++.++|+..|......| ..+...+..+.
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~La 473 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLA 473 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHH
Confidence 5889999999999999999999999999988764 489999999999999999999999999998776 34668899999
Q ss_pred HHHHhcCChhhHHHHHHHHhhC----CC-Cc-hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876 246 RAYGHAGKPEKLGSVLRFIDNS----DI-ML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 319 (349)
..+-+.++.++|...+....+. |. .| .....-.|...+.+.+++++|..........
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~----------------- 536 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG----------------- 536 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-----------------
Confidence 9999999999999988776542 22 22 2223333666677888888887655444332
Q ss_pred ccCchhhhHHHHHHHHHhHH
Q 018876 320 TNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~ 339 (349)
....++|..+++.+++...
T Consensus 537 -~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 537 -ETECEEAKALLREIRKIQA 555 (559)
T ss_pred -CchHHHHHHHHHHHHHhcC
Confidence 2234566666666666544
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=3.9e-12 Score=109.70 Aligned_cols=303 Identities=12% Similarity=0.107 Sum_probs=234.1
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCch
Q 018876 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
..+...|++++|.+++.++.+.. +.+...|.+|...|-..|+.+++...+-...... +-|...|..+.......|.+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 33444599999999999999874 6788999999999999999999998876665553 44678899999999999999
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHhcCCHHHHHHH
Q 018876 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF----NILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~ 190 (349)
..|.-.|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|..-+ ..++..+...++.+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999875 556555566678889999999999999999987543333333 3345667777888999999
Q ss_pred HHHHHhc-CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------------------------CCCcHHHHH
Q 018876 191 MEYMQKY-HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER---------------------------IKPSCVTLC 242 (349)
Q Consensus 191 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~ 242 (349)
++..... +-..+...++.++..+.+...++.+......+.... ..++..+ .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 8877652 223466778889999999999999998887776511 1222222 1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCC--CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 018876 243 SLVRAYGHAGKPEKLGSVLRFIDNSD--IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 320 (349)
.++-++.+....+....+...+...+ +.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23344555555565556666665555 3445678899999999999999999999999988554567899999999999
Q ss_pred cCchhhhHHHHHHHHHhHHhhh
Q 018876 321 NGMKNHAKEFQDLVEKMDETCL 342 (349)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~ 342 (349)
.|..++|.++++++....+...
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCch
Confidence 9999999999999988766544
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=4e-12 Score=101.91 Aligned_cols=313 Identities=14% Similarity=0.092 Sum_probs=159.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-----------CCCHHHHHHHH
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-----------QPDVNTYSILI 70 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~l~ 70 (349)
|.+.|+++.|+..|+...+. .|+..+-..|+-++.--|+-++..+.|.+|...++. .|+....+-.+
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 45788888999999888776 477666555566666778888888888888765431 22322222221
Q ss_pred -----HHHHhcCC--hhHHHHHHHHHHhCCCCCchH-----H--------HH--------HHHHHHhccCchHHHHHHHH
Q 018876 71 -----KSCLKAFA--FDKVQALLSDMSTQGIRPNTV-----T--------YN--------TLIDAYGRAKMFAEMELTLV 122 (349)
Q Consensus 71 -----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~-----~--------~~--------~l~~~~~~~~~~~~a~~~~~ 122 (349)
.-.-+.+. .++++-.--+++.--+.|+-. + +. .-.--+.+.|+++.|.+++.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 11111111 111111111111111122110 0 00 01123566777777777776
Q ss_pred HHhccCCCcc---------------------hhh----------HHHHH-----HHHHccCCHHHHHHHHHHHHhcCCCC
Q 018876 123 KMLSEDCEPD---------------------VWT----------MNCTL-----RAFGNSGQIDTMEKCYEKFQSAGIQP 166 (349)
Q Consensus 123 ~~~~~~~~~~---------------------~~~----------~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~~~~ 166 (349)
-..+..-+.- ... ||.-. ......|++++|.+.|.+.......-
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 5543321110 011 11100 11224567777888777777654332
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
....|+.-+ .+-..|+.++|+..|-++...- ..+......+...|....+..+|++++.+.... ++.|+.+++.+..
T Consensus 524 ~ealfnigl-t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 524 TEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 333333222 3456677777777766554321 124555555555565566666666665554322 3344555555555
Q ss_pred HHHhcCChhhH----------------------------------HHHHHHHhhCCCCchHHHHHHHHHHHH-ccCChHH
Q 018876 247 AYGHAGKPEKL----------------------------------GSVLRFIDNSDIMLDTVFFNCLVDAYG-RLKCFAE 291 (349)
Q Consensus 247 ~~~~~~~~~~a----------------------------------~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 291 (349)
.|-+.|+-..| +..|++..- +.|+..-|..++..|. +.|+++.
T Consensus 601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHH
Confidence 55555554444 444443322 3456666666554443 4566666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 018876 292 MKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 292 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
|.+++++..+. ++-|......|++.+...|
T Consensus 679 a~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 679 AFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 66666666554 3445566666666665555
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=3.9e-12 Score=110.61 Aligned_cols=330 Identities=13% Similarity=0.054 Sum_probs=180.1
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC----C
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF----A 78 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~ 78 (349)
...|++++|...|....+..-...+..+.-|.+.+...|+++.+...|+.+.... +-+..+...+...|...+ .
T Consensus 318 Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 318 HAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred HhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHH
Confidence 4567777777777666654311113344556666777777777777777766552 334445555555555443 3
Q ss_pred hhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHh----ccCCCcchhhHHHHHHHHHccCCHHHHHH
Q 018876 79 FDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML----SEDCEPDVWTMNCTLRAFGNSGQIDTMEK 154 (349)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 154 (349)
.+.|..++.+..+.- +.|...|-.+...+....-+.. +..|.... ..+..+.+...|.+...+...|++.+|..
T Consensus 396 ~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 344555554444432 3355555555555544433322 44443332 23334556667777777777777777777
Q ss_pred HHHHHHhc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------------------
Q 018876 155 CYEKFQSA---GIQPSI------NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS------------------------- 200 (349)
Q Consensus 155 ~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------------- 200 (349)
.|...... ...++. .+-..+...+-..++.+.|..+|..+.+..+.
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 77766543 111122 12223344444455666666666655544311
Q ss_pred --------CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHh------------cCChhhHHH
Q 018876 201 --------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-RIKPSCVTLCSLVRAYGH------------AGKPEKLGS 259 (349)
Q Consensus 201 --------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~ 259 (349)
.++..++.+...+.....+..|.+-|....+. ...+|..+...|...|.. .+..++|++
T Consensus 554 k~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 554 KDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 12333333333333333333333322222211 112344444444443321 233566777
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
+|..+....+ .|...-|-+.-.++..|++.+|..+|.+..+... -...+|..+..+|...|++..|++.|+...+..
T Consensus 634 ~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 634 LYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred HHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777654 3666777777778888888888888888777643 245677777888888888888888777665543
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=3.6e-12 Score=111.63 Aligned_cols=249 Identities=10% Similarity=-0.022 Sum_probs=147.2
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCch
Q 018876 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCL---------KAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
++|...|++..+.. +.+...|..+..++. ..+++++|...+++..+.. +-+...+..+...+...|++
T Consensus 278 ~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 278 QQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 56777777777653 234445555544433 2234677777777777764 23556666676777777888
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018876 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...++++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88888888777664 444556666777777788888888888887776422 2223333444455677778888887777
Q ss_pred HhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCchH
Q 018876 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD-IMLDT 273 (349)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 273 (349)
.....+-++..+..+..++...|+.++|...+.++.... +.+....+.+...+...| +.|...++.+.+.. ..+..
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 654322244556666677777888888888877765432 222333444445556555 35666555554321 11111
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 303 (349)
..+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 510 ~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 510 PGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 111 33344555665555544 6666553
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.2e-11 Score=98.33 Aligned_cols=328 Identities=10% Similarity=0.041 Sum_probs=203.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCh
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDAN-TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAF 79 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 79 (349)
|-+.|++++|++.+.+.++. .|+ +..|.....+|...|+++++.+.-....+. .|+ +..+..-.+++-..|++
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHHHHHHHHHHHHHhhccH
Confidence 45789999999999999987 577 788999999999999999998888777765 343 34455555555556665
Q ss_pred hHHHH----------------------HHHH---------HHhCC--CCCchHHHHHHHHHHh-----------------
Q 018876 80 DKVQA----------------------LLSD---------MSTQG--IRPNTVTYNTLIDAYG----------------- 109 (349)
Q Consensus 80 ~~a~~----------------------~~~~---------~~~~~--~~~~~~~~~~l~~~~~----------------- 109 (349)
++|.. ++.. +.+.+ +-|+.....+....+.
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~ 279 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA 279 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence 54431 1111 11011 2233322222222221
Q ss_pred ----------------------------------------------------------ccCchHHHHHHHHHHhccCCCc
Q 018876 110 ----------------------------------------------------------RAKMFAEMELTLVKMLSEDCEP 131 (349)
Q Consensus 110 ----------------------------------------------------------~~~~~~~a~~~~~~~~~~~~~~ 131 (349)
-.|+.-.|..-|+..+.....
T Consensus 280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~- 358 (606)
T KOG0547|consen 280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA- 358 (606)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-
Confidence 112222222333333322211
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018876 132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID 211 (349)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 211 (349)
+...|-.+..+|....+.++..+.|+...+.+ +-++.+|..-.....-.+++++|..=|++.....+. +...|-.+..
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~ 436 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCC 436 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHH
Confidence 11225555556666666677777777666654 225555655556666666777777777777666533 5556666666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-------chHHHHHHHHHHHH
Q 018876 212 AFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-------LDTVFFNCLVDAYG 284 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~li~~~~ 284 (349)
+..+.+.++++...|++.+.. .+..+..|+...+.+...++++.|.+.|+..++.... +.+.+.-.++..-.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 666777888888888887654 3455677787888888888888888888877664322 11222222222222
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876 285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.+++..|..++....+.+.+ ....|..|...-.+.|+.++|+++|+.-..+.++
T Consensus 516 -k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 516 -KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred -hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 37788888888888776433 4566788888888899999999988877665544
No 47
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.59 E-value=2.9e-11 Score=102.83 Aligned_cols=289 Identities=15% Similarity=0.136 Sum_probs=206.1
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHH-HHHHHHHHh-----
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY-SILIKSCLK----- 75 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~----- 75 (349)
+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+. .|+...| ..+..+..-
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhcccc
Confidence 45689999999999886654 4445666777888899999999999999999987 4555555 444444422
Q ss_pred cCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchH-HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHH
Q 018876 76 AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA-EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEK 154 (349)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 154 (349)
..+.+....+++++... -|.......+.-.+.....|. .+...+..+...|+++ +|+.+-..|.......-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 23567788888888766 244444444433333333443 3455666777777544 56667666776666666666
Q ss_pred HHHHHHhc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 018876 155 CYEKFQSA----G----------IQPSI--NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 155 ~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
++...... + -+|+. .++..+...|...|++++|...+++..+..+. .+..|..-...+-..|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 66665432 1 13444 34466677888999999999999999988643 47888888999999999
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH------HH--HHHHHHHHccCChH
Q 018876 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV------FF--NCLVDAYGRLKCFA 290 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g~~~ 290 (349)
+.+|.+.++..+... .-|...-+..+..+.+.|+.++|.+++......+..|... +| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999998776 4567777778888999999999999999987766433221 22 45677889999999
Q ss_pred HHHHHHHHHHh
Q 018876 291 EMKGVLEVMQQ 301 (349)
Q Consensus 291 ~a~~~~~~~~~ 301 (349)
.|++-|....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 98877766543
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.1e-10 Score=94.24 Aligned_cols=324 Identities=10% Similarity=0.065 Sum_probs=235.5
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018876 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 84 (349)
.|++..|.++|++..+- .|+..+|++.+..=.+-+.++.|..+++...-. .|++..|-.....-.+.|+...+.+
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 58889999999998875 799999999999999999999999999998865 7999999888888888899888888
Q ss_pred HHHHHHhC-CC-CCchHHHHHHHHHHhccCchHHHHHHHHHHhcc-----------------------------------
Q 018876 85 LLSDMSTQ-GI-RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----------------------------------- 127 (349)
Q Consensus 85 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------------- 127 (349)
+|+...+. |- ..+...+.+....=.++..++.|.-+|+-.++.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 88887664 21 011222222222222333333333333222111
Q ss_pred --------CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHH--HHHHHH----H----HHHhcCCHHHHHH
Q 018876 128 --------DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN--TFNILL----D----SYGKAGHFEKMSA 189 (349)
Q Consensus 128 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~----~----~~~~~~~~~~a~~ 189 (349)
.-+-|-.+|-..++.-...|+.+...++|++.+.+ ++|-.. .|.-.| + .-....+++.+.+
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 11445667777777778889999999999998876 444211 122211 1 1135678888999
Q ss_pred HHHHHHhcCCCCchHHHHH----HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018876 190 VMEYMQKYHYSWTIVTYNI----VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
+++...+. ++....|+.- ......++.++..|.+++...+ |..|-..+|...|..=.+.++++.+..+++...
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99888773 3334444443 3444457889999999998765 567888999999999999999999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876 266 NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC-KPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 266 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
+.++ .+..+|......-...|+.+.|..+|+-.++... .-....|.+.|.--...|.++.|..+++.+.+..
T Consensus 465 e~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 465 EFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9875 4888999888888899999999999999988632 2234567777777788999999999998876643
No 49
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=6.5e-11 Score=99.09 Aligned_cols=327 Identities=10% Similarity=0.008 Sum_probs=193.4
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (349)
.+.+.++-|..+|....+- ++-+...|......--..|..++...+|++....- +.....|-......-..|++..|
T Consensus 527 ~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHH
Confidence 3455566666666666654 23445556555555555566666666666665541 33344444455555556666666
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
..++....+.. +-+...|-..+..-..+.+++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+.
T Consensus 604 r~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 66666665553 225555666666666666666666666666543 444555544444444555666666666655554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH
Q 018876 163 GIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC 242 (349)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (349)
++.-...|-.+...+-+.++.+.|...|..-.+.- +-.+..|-.+...--+.|.+-.|..+++...-.+ +.+...|.
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHH
Confidence 22223344455555555555555555555443332 2234445555555555555555555555554443 34445555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhC-----------------------------CCCchHHHHHHHHHHHHccCChHHHH
Q 018876 243 SLVRAYGHAGKPEKLGSVLRFIDNS-----------------------------DIMLDTVFFNCLVDAYGRLKCFAEMK 293 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~-----------------------------~~~~~~~~~~~li~~~~~~g~~~~a~ 293 (349)
..|+.-.+.|+.+.|..+..++... .+.-|+++.-.+...|....+++.|.
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444333211 12236677778888888899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 294 GVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 294 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+.|.+..+.+.. +..+|.-+..-+.++|.-++-.+++..+..-.+
T Consensus 838 ~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 838 EWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 999999987533 578899999999999998888888887766443
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=8.1e-12 Score=97.71 Aligned_cols=201 Identities=13% Similarity=0.055 Sum_probs=131.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018876 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4445556666666777777777776666543 234556666666677777777777777766665432 45556666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHH
Q 018876 213 FGRAGDLKQMEYLFRLMRSERI-KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (349)
+...|++++|...++....... +.....+..+...+...|++++|...+........ .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665321 12234555666777777778888777777766543 245566677777778888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876 292 MKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 292 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
|...+++.... .+.+...+..+...+...|+.+.|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888777765 2335566666667777778888777776665543
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=1.8e-11 Score=107.30 Aligned_cols=267 Identities=10% Similarity=0.038 Sum_probs=188.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHh---------ccCchHHHHHHHHHHh
Q 018876 60 QPDVNTYSILIKSCLK-----AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG---------RAKMFAEMELTLVKML 125 (349)
Q Consensus 60 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 125 (349)
..+...|...+.+... .++.++|...|++..+.. +-+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3555656555555322 234679999999998873 224455655555443 2345899999999999
Q ss_pred ccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 018876 126 SEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVT 205 (349)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 205 (349)
+.. +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.++. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 875 5567778888888999999999999999999885 446778888999999999999999999999887644 3333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc
Q 018876 206 YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
+..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+..+..... .+....+.+...|+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhc
Confidence 3444555667899999999999987654223455577788888999999999999998766532 245556667777888
Q ss_pred cCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHH
Q 018876 286 LKCFAEMKGVLEVMQQR-GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 286 ~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
.| +.|...++.+.+. ...|....+.. ..+.-.|+.+.+... +.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhc
Confidence 88 4777777776654 22233333333 344556666666665 55444
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=8.5e-13 Score=113.49 Aligned_cols=241 Identities=15% Similarity=0.125 Sum_probs=141.4
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.++-.+...|+.|+..+|.+++.-|+..|+++.|- +|.-|+-. ..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC---------
Confidence 45667888899999999999999999999999998 88888766 33677888999999988888887776
Q ss_pred CCCCchHHHHHHHHHHhccCchHH---HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh-cCCCCCH
Q 018876 93 GIRPNTVTYNTLIDAYGRAKMFAE---MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS-AGIQPSI 168 (349)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 168 (349)
.|...+|..|..+|...|+... +.+.+.... ..+...|.......++..+.- .+..||.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~---------------~sfs~~Gvgs~e~~fl~k~~c~p~~lpda 142 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESIN---------------QSFSDHGVGSPERWFLMKIHCCPHSLPDA 142 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHH---------------hhhhhhccCcHHHHHHhhcccCcccchhH
Confidence 6788999999999999998654 222222221 122222222222222222110 0111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH------------------------------HHHHhcCCCCchHHHHHHHHHHHhcCC
Q 018876 169 NTFNILLDSYGKAGHFEKMSAVM------------------------------EYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
.+ .+......|-++.+.+++ .......-.|++.+|.+++..-...|+
T Consensus 143 ~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 143 EN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Confidence 11 111112222222222222 222221113556666666666666666
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876 219 LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
.+.|..++.+|.+.|.+.+..-|..++-+ .++..-+..+++.|.+.|+.|+..|+...+..+..+|
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 66666666666666665555555555433 4555555555666666666666666655555555533
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=1.4e-11 Score=96.40 Aligned_cols=200 Identities=11% Similarity=0.049 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018876 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455555666666666666666666665542 2234555556666666666666666666665543 2334455555666
Q ss_pred HHccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 018876 143 FGNSGQIDTMEKCYEKFQSAGI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
+...|++++|.+.+.+..+... +.....+..+...+...|++++|...+.+..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666655321 123344555566666667777777777666655422 44556666666667777777
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
|...+++.... .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777666554 233445555566666666777777666665543
No 54
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.55 E-value=1.2e-10 Score=99.01 Aligned_cols=295 Identities=13% Similarity=0.095 Sum_probs=209.9
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHH-HHHHHHHHhc-
Q 018876 33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVT-YNTLIDAYGR- 110 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~- 110 (349)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |+... |..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 445678899999999999886654 23445566788899999999999999999999985 45444 4555555422
Q ss_pred ----cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018876 111 ----AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID-TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 111 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
..+.+....+++++...- |.......+.-.+.....+. .+..++..+...|++ .+|+.+-..|....+.+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 235677888888887653 44433333333333323333 355667777888865 34666666666555555
Q ss_pred HHHHHHHHHHhc----C----------CCCch--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 018876 186 KMSAVMEYMQKY----H----------YSWTI--VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249 (349)
Q Consensus 186 ~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (349)
....++...... + -+|+. .++..+...|-..|++++|+++++..++.. +-.+..|..-.+.+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 555666554322 1 12333 344666888889999999999999998864 333677888889999
Q ss_pred hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHH------HH--HHHHHHHHcc
Q 018876 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV------TY--RTMVRAYSTN 321 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~ 321 (349)
+.|++.+|...++.....+.. |-..-+..+..+.+.|++++|.+++....+.+..|-.. .| .....+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988753 77777788899999999999999999888776543322 22 3445689999
Q ss_pred CchhhhHHHHHHHHHhH
Q 018876 322 GMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 322 g~~~~a~~~~~~~~~~~ 338 (349)
|++..|.+.+..+.+.-
T Consensus 319 ~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKHF 335 (517)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999998877776643
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.55 E-value=8.3e-12 Score=104.86 Aligned_cols=252 Identities=18% Similarity=0.160 Sum_probs=187.4
Q ss_pred chHHHHHHHHHHhccCchHHHHHHHHHHhcc-----C-CCcchh-hHHHHHHHHHccCCHHHHHHHHHHHHhc-----CC
Q 018876 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-----D-CEPDVW-TMNCTLRAFGNSGQIDTMEKCYEKFQSA-----GI 164 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 164 (349)
-..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++... |.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677889999999999999999888765 2 133333 3344777899999999999999998653 21
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhC---
Q 018876 165 --QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY-----H-YSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--- 232 (349)
Q Consensus 165 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 232 (349)
+.-..+++.|..+|.+.|++++|...++...+. + ..|. ...++.+...++..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 123456777788899999999998888765431 1 1122 234566777888999999999999876532
Q ss_pred CCC----CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----C---CCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876 233 RIK----PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----D---IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 233 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
-+. -...+++.+...|...|++++|.++++.+... + ..-....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 111 22467899999999999999999999887542 1 112345678899999999999999999987654
Q ss_pred c----CC-CCC-HHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhccCCCC
Q 018876 302 R----GC-KPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD 348 (349)
Q Consensus 302 ~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 348 (349)
. |. .|+ ..+|..|...|...|+++.|.++.+.+....+...+...|+
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 3 22 223 46799999999999999999999999998877766665554
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.2e-12 Score=100.43 Aligned_cols=237 Identities=14% Similarity=-0.002 Sum_probs=199.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHH
Q 018876 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT 139 (349)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (349)
..|..--+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||..|-+.|.+..+...|+.++.+-.+.- +-++....-+
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ 296 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQ 296 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhhhhh
Confidence 345555577889999999999999999988876 5677899999999999999999999999888652 4445445667
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 018876 140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL 219 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (349)
.+.+...++.++|.++|+...+.. +.+......+...|.-.++++.|...++++.+.|.. ++..|+.+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 788888999999999999988874 447777777888888999999999999999999977 889999998888899999
Q ss_pred HHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHH
Q 018876 220 KQMEYLFRLMRSERIKPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
+-++..|.+....-..|+ ..+|..+.......|++..|.+.|+....++.. +...+|.|...-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999988876533333 467888888889999999999999998887653 77889999999999999999999999
Q ss_pred HHHhc
Q 018876 298 VMQQR 302 (349)
Q Consensus 298 ~~~~~ 302 (349)
.....
T Consensus 454 ~A~s~ 458 (478)
T KOG1129|consen 454 AAKSV 458 (478)
T ss_pred Hhhhh
Confidence 88765
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=2.5e-12 Score=98.64 Aligned_cols=238 Identities=9% Similarity=-0.037 Sum_probs=200.3
Q ss_pred CchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018876 96 PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175 (349)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (349)
.|-.--+.+.++|.+.|.+.+|.+.++.-..+ .|-+.||..+-++|.+..++..|+.++.+-.+. .+-+.....-..
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~A 297 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQA 297 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhH
Confidence 34444467889999999999999999998877 666778999999999999999999999998876 344555556677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018876 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
+.+-..++.++|.++++...+... .++.....+...|.-.++++-|..+++++.+.|+ .++..|+.+.-+|...++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchh
Confidence 888899999999999999988763 3778888888888899999999999999999995 57789999999999999999
Q ss_pred hHHHHHHHHhhCCCCc--hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHH
Q 018876 256 KLGSVLRFIDNSDIML--DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
-++.-|.+....--.| -..+|..+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|+.++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 9999998876543333 3457878888899999999999999998877533 678899998888999999999999988
Q ss_pred HHHhHH
Q 018876 334 VEKMDE 339 (349)
Q Consensus 334 ~~~~~~ 339 (349)
.....+
T Consensus 455 A~s~~P 460 (478)
T KOG1129|consen 455 AKSVMP 460 (478)
T ss_pred hhhhCc
Confidence 776554
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.51 E-value=5.1e-10 Score=97.81 Aligned_cols=240 Identities=12% Similarity=0.035 Sum_probs=127.5
Q ss_pred chHHHHHHHHHHhccCchHHHHHHHHHHhccCC--CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018876 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDC--EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL 174 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 174 (349)
++...+.|.+.|.-.|++..+..+...+..... ..-...|-.+.++|...|++++|...|.+..+.....-...+.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 455556666666666666666666666554421 112234556666666667777776666665554211112333445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG----DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
...+.+.|+.+.+...|+.+.+..+. +..+...+...|...+ ..+.|..++....+.. +.|...|..+...+.
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e- 425 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE- 425 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-
Confidence 56666666666666666666655422 4555555555555543 3344555555444332 344555555555443
Q ss_pred cCChhhHHHHHHHHh----hCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc---CCCCCH------HHHHHHHHH
Q 018876 251 AGKPEKLGSVLRFID----NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR---GCKPDK------VTYRTMVRA 317 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~------~~~~~l~~~ 317 (349)
.+++..++.++..+. ..+..+.+...|.+...+...|.+.+|...|+..... ...+|. .+-..+...
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 333333354444332 2333355666666777777777777777776666544 111222 222333444
Q ss_pred HHccCchhhhHHHHHHHHHhHH
Q 018876 318 YSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+-..++++.|.+.+..+.+-.+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCc
Confidence 4555566666666666655443
No 59
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=8.6e-11 Score=94.44 Aligned_cols=278 Identities=12% Similarity=0.044 Sum_probs=205.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHH-HH-cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSA-YG-RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF 79 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (349)
|.+.|+++.|++++.-+.+.+-+.....-+.|-.. |. .-.++..|.+.-+...... .-+......-.......|++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcH
Confidence 45778888888888877765433323333333222 22 2346777777777766554 34555444444455567899
Q ss_pred hHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018876 80 DKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
++|...+.+.....-......||.= -.+-..|++++|+..|-++... +..+..+...+...|....+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999998876333233333332 3456779999999999887643 2446677778889999999999999999887
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH
Q 018876 160 QSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (349)
... ++.|+...+-|...|-+.|+-..|.+.+-+--+. ++-+..+...|...|....-+++++.+|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 765 5668999999999999999999999887654443 455888999999999999999999999998643 589999
Q ss_pred HHHHHHHHH-HhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018876 240 TLCSLVRAY-GHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 240 ~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
-|..++..| .+.|++.+|..+++.+... ++.|..+...|++.+...|-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 998887655 5689999999999998875 45688888888888877764
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.8e-10 Score=94.85 Aligned_cols=288 Identities=10% Similarity=-0.031 Sum_probs=227.7
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHH
Q 018876 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
.++.....-.+-+...+++.+..++++.+.+.. +++...+..-|.++...|+..+...+=.+|.+. .|-.+.+|-.+
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 345555666677888899999999999998875 677777777788999999998888888888877 35577899999
Q ss_pred HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018876 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
..-|.-.|...+|.+.|.+..... +.=...|-.+...|+-.|..++|...+....+.= +-...-+-.+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 988988999999999999887553 2224578888999999999999999988876641 11222223344457889999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCcHHHHHHHHHHHHhcCChhhHH
Q 018876 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE------RIKPSCVTLCSLVRAYGHAGKPEKLG 258 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~ 258 (349)
+.|.+.|.+.....+ .|+..++-+.-.....+.+.+|..+|+..... .......+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999999887753 37888888887777889999999999887621 11124567899999999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 018876 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
..++....... -+..++.++.-.|...|+++.|.+.|.+.... .|+..+-..++..+...
T Consensus 476 ~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 476 DYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHHh
Confidence 99999988764 48899999999999999999999999988754 78887777777655443
No 61
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.50 E-value=8.2e-10 Score=92.72 Aligned_cols=326 Identities=9% Similarity=0.021 Sum_probs=262.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCC--chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDA--NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
+.|.+--+..+....+..|+.. -..+|..-.+.|.+.+.++-|..+|....+.. +-+...|......--..|..+.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHHH
Confidence 3466677777888877776543 35678888999999999999999999998864 5667788888877778899999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
...+|++.... .+-....|......+-..|+...|..++.+..+.. +.+...|-..+..-..+.+++.|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 99999999887 45566778888888888999999999999999876 44788899999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018876 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
. .|+...|.--+....-.+..++|.+++++..+.- +.-...|..+.+.+-+.++.+.|.+.|..-... ++-....|
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 5 5788888877777788899999999999888764 335678888999999999999999988765433 34456677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc----C--------------
Q 018876 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----G-------------- 303 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-------------- 303 (349)
..+...=-+.|.+-.|..+++...-.++. +...|-..|+.-.+.|+.+.|..+..+..+. |
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 77877778889999999999999888764 8889999999999999999998777665443 1
Q ss_pred -----------CCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876 304 -----------CKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 304 -----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
..-|+.....+...+....+++.|.+.|.+.-+.+
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 23355555666666777777777777776655543
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=2.3e-13 Score=77.43 Aligned_cols=50 Identities=30% Similarity=0.549 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 018876 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 320 (349)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888889999999999999999999999888888999999988888864
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=3.4e-13 Score=76.72 Aligned_cols=50 Identities=40% Similarity=0.685 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 018876 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (349)
||..+||+++.++++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776654
No 64
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=6.3e-09 Score=84.33 Aligned_cols=322 Identities=11% Similarity=0.080 Sum_probs=186.5
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHH
Q 018876 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 83 (349)
++++..|..+|++.+... ..+...|..-+.+=.++..+..|..+++..... -|-+ ..|---+..--..|++..|.
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHH
Confidence 466778888888888754 456777777777777888888888888877764 2332 33444444445667788888
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-
Q 018876 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA- 162 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 162 (349)
++|++-.+- .|+...|++.++.=.+.+.++.|..+|++..-- .|++.+|--..+.-.+.|+..-+..+|+...+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 888877764 678888888888777778888888888777643 577777777777777777777777777666543
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------------------------------------c
Q 018876 163 GI-QPSINTFNILLDSYGKAGHFEKMSAVMEYMQK--------------------------------------------Y 197 (349)
Q Consensus 163 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------------------------~ 197 (349)
|- ..+...+.++...-.++..++.|.-+|+-... .
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 10 01122222222222233334444443333222 2
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH--HHHHHH--------HHHHhcCChhhHHHHHHHHhhC
Q 018876 198 HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV--TLCSLV--------RAYGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~ 267 (349)
+ +.|..+|--.+..-...|+.+...++|++.+.. ++|-.. .|...| -.=....+++.+.++++...+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 2 235566666677667777888888888777654 344211 111111 0112345666666666655542
Q ss_pred CCCchHHHHHHH----HHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 268 DIMLDTVFFNCL----VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 268 ~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
++....+|..+ ...-.++.+...|.+++-..+ |..|...+|...|..-.+.++++....+++++.+.++
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 11222233222 222234455555555555443 3355555666666555555666666666655555444
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.9e-09 Score=87.45 Aligned_cols=302 Identities=11% Similarity=-0.013 Sum_probs=176.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-hHHHHHHHHH
Q 018876 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDA 107 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 107 (349)
+.....-|.++|++++|++.|.+.... .|+ +..|.....+|...|+|+++.+--.+..+. .|+ +..+..-.++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 445566788999999999999999987 577 888999999999999999998877777665 343 2344444455
Q ss_pred HhccCchHHHHH----------------------HHHH---------Hhcc--CCCcchhhHHHHHHHHHc--------c
Q 018876 108 YGRAKMFAEMEL----------------------TLVK---------MLSE--DCEPDVWTMNCTLRAFGN--------S 146 (349)
Q Consensus 108 ~~~~~~~~~a~~----------------------~~~~---------~~~~--~~~~~~~~~~~l~~~~~~--------~ 146 (349)
+-..|++++|+. ++.+ +... .+-|+.....+....+.. .
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 555555555442 2111 1111 122333333333322210 0
Q ss_pred C--------------------CHHHHHHHHHHHHh---cCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018876 147 G--------------------QIDTMEKCYEKFQS---AGIQPS---------INTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 147 ~--------------------~~~~a~~~~~~~~~---~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
+ .+..|...+.+-.. .....+ ..+.......+.-.|+.-.|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0 11112221111100 000111 222222223344567777777777777
Q ss_pred HhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH
Q 018876 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV 274 (349)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 274 (349)
.+....+ ...|--+...|....+.++.+..|+.....+ +-++.+|..-.+...-.+++++|..-|++.+...+. +..
T Consensus 353 I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~ 429 (606)
T KOG0547|consen 353 IKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAY 429 (606)
T ss_pred HhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhH
Confidence 6665442 2235556666777777777777777766554 344556666666666666777777777776665532 555
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.|-.+..+..+.+++++++..|++.+.+ ++--+..|+.....+...++++.|.+.++...++.+.
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 5666666666667777777777776665 3334566666666777777777777777766666554
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=5.4e-10 Score=94.15 Aligned_cols=238 Identities=15% Similarity=0.103 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCchH-HHHHHHHHHhccCchHHHHHHHHHHhcc-----C--
Q 018876 63 VNTYSILIKSCLKAFAFDKVQALLSDMSTQ-----GI-RPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSE-----D-- 128 (349)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 128 (349)
..+...+...|...|+++.|+.++....+. |. .|... ..+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777778888888888777776554 21 22332 3334666777888888888888777643 1
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C
Q 018876 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA-----GI-QPS-INTFNILLDSYGKAGHFEKMSAVMEYMQKY---H 198 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 198 (349)
.+.-..+++.|...|.+.|++++|...++...+. |. .|. ...++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1223456677777888888888877777665431 11 122 223566677788888888888888765432 1
Q ss_pred CCC----chHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh-
Q 018876 199 YSW----TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-----R--IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN- 266 (349)
Q Consensus 199 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 266 (349)
+.+ -..+++.+...|...|++++|.++++.++.. + ..-....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2567888888999999999999988887642 1 222245677888888888888888888876432
Q ss_pred ---CCC--CchHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 018876 267 ---SDI--MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 267 ---~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 300 (349)
.|+ +-...+|..|...|.+.|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 2235678889999999999999998887765
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.38 E-value=1.5e-09 Score=79.61 Aligned_cols=200 Identities=15% Similarity=0.009 Sum_probs=135.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 018876 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
...+.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+..+. +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3445556777777777777777777764 335666777777777777777777777777766543 56667777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH
Q 018876 216 AGDLKQMEYLFRLMRSERIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
.|++++|...|++.......+ -..+|..+.-+..+.|+.+.|...+++..+.... .+...-.+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 777777777777776542222 2356777777777777777777777777766543 34455566677777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 295 VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 295 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.++.....+. ++..+....|+.-.+.|+.+.+.++-..+.+.-+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 7777766654 6777777777777777777777776666555443
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=2.9e-09 Score=85.85 Aligned_cols=222 Identities=10% Similarity=-0.013 Sum_probs=118.8
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHH
Q 018876 39 RSGLFDKAFSLLEHMKNTPDCQPD--VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE 116 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (349)
..+..+.++.-+.++.......|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 334556666666666543222222 2445556666666777777777777766653 2345666667777777777777
Q ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018876 117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
|...|++..+.. +-+...+..+..++...|++++|.+.++...+.. |+..........+...++.++|...+.+...
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777777766543 2234555666666666777777777777766653 2211111122223345567777777755433
Q ss_pred cCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CC---CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018876 197 YHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE---RI---KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (349)
.. .|+...+ .+. ....|+...+ ..+..+.+. .+ +.....|..+...+...|++++|...|+...+.++
T Consensus 194 ~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 KL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22 1222111 122 2223444333 233333211 10 11234666777777777777777777777776553
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9.9e-09 Score=81.78 Aligned_cols=291 Identities=9% Similarity=-0.028 Sum_probs=191.4
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-hHHHHHHHHHHhccCchHHHH
Q 018876 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 118 (349)
.++...|...+-.+......+-|+.....+..++...|+.++|+..|++.... .|+ ........-.+.+.|+++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444555554444444344667778888888888899999999888887765 232 222222333445677777777
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018876 119 LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
.+...+.... .-....|..-.......++++.|+.+-++.++.. +.+...+-.-...+...+++++|.-.|+..+...
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 7777666432 2233344444455556778888888888877654 2245555555567778888888888888887764
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH-HHHH-hcCChhhHHHHHHHHhhCCCCchHHHH
Q 018876 199 YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV-RAYG-HAGKPEKLGSVLRFIDNSDIMLDTVFF 276 (349)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (349)
+ -+...|.-|+.+|...|.+.+|...-+..... .+.+..+.+.+. ..|. ....-++|.++++......+. -....
T Consensus 365 p-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV 441 (564)
T KOG1174|consen 365 P-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAV 441 (564)
T ss_pred h-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHH
Confidence 3 36788888898888888888887776655432 233444444432 2222 223356777888777665421 24456
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 277 NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+.+...+...|..+.+..+++..... .||....+.|.+.+...+.+.+|.+.|....+.++
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 66777788888888888888877764 67888888888888888888888887776665544
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.1e-09 Score=87.79 Aligned_cols=272 Identities=8% Similarity=-0.024 Sum_probs=215.0
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 83 (349)
..+++.+..++++.+.+.. +++...+..=|.++...|+..+-..+=.++.+.. |....+|-.+...|...|+..+|.
T Consensus 256 ~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHHH
Confidence 4678899999999998874 7788888888889999999988888888888764 566788999999999999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018876 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
+.|.+...... .=...|-.....|+-.|..++|...+...-+-- +-...-+-.+.--|.+.++.+.|.++|.+.....
T Consensus 333 ry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 333 RYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 99998766531 124578888899999999999999887765431 1111112234445778999999999999988763
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC----CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 018876 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH--YS----WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (349)
+.|+...+-+.-.....+.+.+|...|+.....- .. .-..+++.|..++.+.+.+++|+..+++..... +.+
T Consensus 411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~ 488 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKD 488 (611)
T ss_pred -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCc
Confidence 5578888888877888899999999998776211 11 134568889999999999999999999998765 678
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018876 238 CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
..++.++.-.+...|+++.|...|.+.... .|+..+...++..+.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 899999999999999999999999988764 567666666665443
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=6.1e-09 Score=83.97 Aligned_cols=227 Identities=9% Similarity=-0.040 Sum_probs=160.2
Q ss_pred CChhHHHHHHHHHHhCC-CCCc--hHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018876 77 FAFDKVQALLSDMSTQG-IRPN--TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
+..+.++.-+.+++... ..|+ ...|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777777777542 1222 3567778888999999999999999998875 456788999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876 154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
..|++..+.. +-+..++..+..++...|++++|...++...+..+. +. ............++.++|...+.......
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999998864 335677888888899999999999999999886533 22 22222223445678999999997755432
Q ss_pred CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh---CCCC---chHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 018876 234 IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN---SDIM---LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 307 (349)
.|+...+ . ......|+...+ ..+..+.+ ..+. .....|..+...+.+.|++++|...|++....++ ||
T Consensus 196 -~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~ 269 (296)
T PRK11189 196 -DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YN 269 (296)
T ss_pred -CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ch
Confidence 3332222 2 233345666554 34444432 1111 1346789999999999999999999999998753 35
Q ss_pred HHHHHH
Q 018876 308 KVTYRT 313 (349)
Q Consensus 308 ~~~~~~ 313 (349)
..-+..
T Consensus 270 ~~e~~~ 275 (296)
T PRK11189 270 FVEHRY 275 (296)
T ss_pred HHHHHH
Confidence 444443
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.34 E-value=8e-08 Score=80.33 Aligned_cols=308 Identities=12% Similarity=-0.006 Sum_probs=186.8
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHH--
Q 018876 27 TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT-- 103 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 103 (349)
...|..+...+...|+.+.+.+.+....+.....++. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4556667777777788888777776655442212332 222233445667899999999999988763 334434442
Q ss_pred -HHHHHhccCchHHHHHHHHHHhccCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876 104 -LIDAYGRAKMFAEMELTLVKMLSEDCEPD-VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 104 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
........+....+.+.+.... ...|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 1112222455555555555421 12333 3344455667889999999999999998875 44667788888899999
Q ss_pred CCHHHHHHHHHHHHhcCCC-Cc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCcHHHH-H--HHHHHHHhcCCh
Q 018876 182 GHFEKMSAVMEYMQKYHYS-WT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI-KPSCVTL-C--SLVRAYGHAGKP 254 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~ 254 (349)
|++++|...+++....... |+ ...|..+...+...|++++|..++++...... .+..... . .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999999988765422 22 23455678888999999999999999864332 1211111 1 233334444543
Q ss_pred hhHHHH--H-HHHhhCCC-CchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC------CCHHHHHHHH--HHHHccC
Q 018876 255 EKLGSV--L-RFIDNSDI-MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK------PDKVTYRTMV--RAYSTNG 322 (349)
Q Consensus 255 ~~a~~~--~-~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------p~~~~~~~l~--~~~~~~g 322 (349)
..+.++ + ........ ............++...|+.+.|..+++.+...... ....+-..++ .++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333333 1 21111100 111222235677788899999999999988764221 0111222233 3467889
Q ss_pred chhhhHHHHHHHHHhH
Q 018876 323 MKNHAKEFQDLVEKMD 338 (349)
Q Consensus 323 ~~~~a~~~~~~~~~~~ 338 (349)
+.+.|.+.+.......
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999887766543
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.6e-08 Score=80.71 Aligned_cols=278 Identities=11% Similarity=0.020 Sum_probs=208.8
Q ss_pred CCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHH
Q 018876 23 CDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY 101 (349)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (349)
++-|+.....+..++...|+.++|+..|++.... .|+. .....-.-.+.+.|+.+....+...+.... +-+...|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 5667888999999999999999999999998865 3433 333333334567889998888888887652 2344555
Q ss_pred HHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876 102 NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 102 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
-.-.......++++.|+.+-++.++.. +.+...+-.-...+...++.++|.-.|....... +-+..+|.-|+.+|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 555556667789999999999988764 4445555555567788999999999999887763 45888999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHH-HHHH-hcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCChhhHH
Q 018876 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVI-DAFG-RAGDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAGKPEKLG 258 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 258 (349)
|++.+|..+-+...+. ++.+..+...+. ..+. ....-++|..+++..... .|+ ....+.+...|...|..+.+.
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHH
Confidence 9999998877665543 233566666552 2222 333457899999887654 343 467788889999999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHH
Q 018876 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR 312 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 312 (349)
.+++..... .||....+.|...+...+.+++|++.|......+.. |..+..
T Consensus 459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl~ 509 (564)
T KOG1174|consen 459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTLR 509 (564)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHHH
Confidence 999988764 479999999999999999999999999988877432 344433
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=4.3e-08 Score=84.09 Aligned_cols=333 Identities=13% Similarity=0.069 Sum_probs=195.4
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cCChhH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK-AFAFDK 81 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 81 (349)
..+|+++.+.+.|++.... .......|+.+...+...|.-..|..+.+.-.....-+++...+-..-..|.+ .+..++
T Consensus 334 ~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee 412 (799)
T KOG4162|consen 334 SRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE 412 (799)
T ss_pred HHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence 3466777777777766543 23345567777777777777777777776655442212333333333333333 344555
Q ss_pred HHHHHHHHHhC--CC--CCchHHHHHHHHHHhcc-----------CchHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018876 82 VQALLSDMSTQ--GI--RPNTVTYNTLIDAYGRA-----------KMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146 (349)
Q Consensus 82 a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (349)
++.+-.+.... +. ......|..+.-+|... ....++++.+++..+.+ +.|......+.--|+-.
T Consensus 413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQ 491 (799)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHH
Confidence 54444444331 10 01122222222222211 11334455555554443 12222222233334555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC--------------------------
Q 018876 147 GQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY-HY-------------------------- 199 (349)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-------------------------- 199 (349)
++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+..... +.
T Consensus 492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~ 571 (799)
T KOG4162|consen 492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCI 571 (799)
T ss_pred HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHH
Confidence 666666666666666544445555655555555555555555544332210 00
Q ss_pred ---------------------------------------------------------------------CCc------hH
Q 018876 200 ---------------------------------------------------------------------SWT------IV 204 (349)
Q Consensus 200 ---------------------------------------------------------------------~~~------~~ 204 (349)
.|+ ..
T Consensus 572 ~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~ 651 (799)
T KOG4162|consen 572 HKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQK 651 (799)
T ss_pred HHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHH
Confidence 000 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018876 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
.|......+.+.++.++|...+.+..... +.....|......+...|..++|.+.|......++. ++.+..++...+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 23344455556666666666666654332 344455666666777788889999988888776543 6778889999999
Q ss_pred ccCChHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876 285 RLKCFAEMKG--VLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 285 ~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+.|+..-|.. ++.++.+.+.. ++..|..+...+.+.|+.++|.+.|+-..++.++
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 9999888887 99999998754 8999999999999999999999999998888775
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=7.4e-09 Score=76.09 Aligned_cols=196 Identities=16% Similarity=0.025 Sum_probs=108.6
Q ss_pred HHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876 102 NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 102 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
.-|.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 334445566666666666666666554 3344555556666666666666666666655543 22455555555556666
Q ss_pred CCHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018876 182 GHFEKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV 260 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (349)
|++++|...|+...... ..--..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.......|++..|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 66666666665554432 11124455555555556666666666666655543 22234455555556666666666666
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876 261 LRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
++.....+. ++..+.-..|+.-...|+.+.+-+.=.++..
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666555543 4555555555555566666555555444444
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=5.1e-08 Score=81.47 Aligned_cols=291 Identities=13% Similarity=0.048 Sum_probs=179.3
Q ss_pred CCChHHHHHHHHHHHhcCCCCchh---hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH----hcC
Q 018876 5 CKQPEKAHELFQAMVDEGCDANTQ---SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCL----KAF 77 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 77 (349)
.|+.+.+.+.+....+.. +++.. ........+...|++++|.+.+++..... +.+...+.. ...+. ..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~ 94 (355)
T cd05804 19 GGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSG 94 (355)
T ss_pred cCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhccccc
Confidence 466777767676665542 22222 22233445678899999999999988763 344444442 22222 234
Q ss_pred ChhHHHHHHHHHHhCCCCCc-hHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 018876 78 AFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
....+.+.+... ....|+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+
T Consensus 95 ~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 95 MRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred CchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555541 122333 3444556678889999999999999999875 455677788889999999999999999
Q ss_pred HHHHhcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCchHHH-H--HHHHHHHhcCChHHHHHH--HH
Q 018876 157 EKFQSAGI-QPSI--NTFNILLDSYGKAGHFEKMSAVMEYMQKYHY-SWTIVTY-N--IVIDAFGRAGDLKQMEYL--FR 227 (349)
Q Consensus 157 ~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~~ 227 (349)
++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+.+. +.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~ 251 (355)
T cd05804 172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLA 251 (355)
T ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHH
Confidence 99877532 2232 3455788889999999999999999864432 1122111 1 223333344433333222 21
Q ss_pred HHHhCCC--CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC------c--hHHHHHHHHHHHHccCChHHHHHHHH
Q 018876 228 LMRSERI--KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM------L--DTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 228 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
....... ............++...|+.+.|...++.+...... . .....-....++...|++++|.+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~ 331 (355)
T cd05804 252 DYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLG 331 (355)
T ss_pred HHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111110 111122235677788899999999999887653211 0 11222233344668999999999998
Q ss_pred HHHhc
Q 018876 298 VMQQR 302 (349)
Q Consensus 298 ~~~~~ 302 (349)
.....
T Consensus 332 ~al~~ 336 (355)
T cd05804 332 PVRDD 336 (355)
T ss_pred HHHHH
Confidence 87754
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=3.1e-07 Score=77.50 Aligned_cols=191 Identities=9% Similarity=0.025 Sum_probs=101.9
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (349)
...|+-++|......-...+ ..+.+.|+.+.-.+....++++|++.|......+ +.|...+.-+.-.-++.++++..
T Consensus 52 ~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhH
Confidence 44566677776666655532 4456667777777777777777777777777653 45556666555555566666665
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC-CCcchhhHHHHH------HHHHccCCHHHHHHH
Q 018876 83 QALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTL------RAFGNSGQIDTMEKC 155 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~ 155 (349)
......+.+.. +-....|..+..++.-.|+...|..+++...+.. ..|+...+.... ......|..+.|.+.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 55555555441 1133445555555556666677766666665443 134433332222 122344444444444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018876 156 YEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
+..-... +......-.+-...+.+.+++++|..++..+...+
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 4332221 11111111223344455566666666666665544
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.4e-08 Score=79.47 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=69.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHH-HHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHc
Q 018876 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFF-NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR-TMVRAYST 320 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~ 320 (349)
.+.++.+..|++.+|+++|-.+....++ |..+| ..|.++|.+++.++.|+.++-.+. -+.+..+.. .+..-|.+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHH
Confidence 4667777888999999999888776665 44454 556788899999999877654433 233444443 34456888
Q ss_pred cCchhhhHHHHHHHHHhHHhhh
Q 018876 321 NGMKNHAKEFQDLVEKMDETCL 342 (349)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~ 342 (349)
.+.+=-|.+.|+.++.+++++.
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHHHHHHHHhhhHHHccCCCcc
Confidence 8988889999999998887653
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.26 E-value=5.1e-09 Score=83.26 Aligned_cols=250 Identities=12% Similarity=0.077 Sum_probs=147.1
Q ss_pred HHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchH
Q 018876 36 AYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (349)
-+.-.|++..++.-.+ .....+ ..+......+.+++...|+.+.+. .++.... .|.......+...+...++-+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~-~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSP-ENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTC-HHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCc-hhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 3445677777776555 322211 223344455667777777766543 3333332 566666655555554444555
Q ss_pred HHHHHHHHHhccCCC-cchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018876 116 EMELTLVKMLSEDCE-PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
.+..-+++....... .+.........++...|++++|+++++.. .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566555555444323 23333333334566778888887776542 35666667777888888888888888888
Q ss_pred HhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018876 195 QKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (349)
.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|..++......+..
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 7654 23334444444432 33578888888887543 4567777788888888888888888888887766543
Q ss_pred chHHHHHHHHHHHHccCCh-HHHHHHHHHHHhc
Q 018876 271 LDTVFFNCLVDAYGRLKCF-AEMKGVLEVMQQR 302 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~ 302 (349)
++.+...++.+....|+. +.+.+.+.++...
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 566666677777777776 5566777777765
No 80
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=5.8e-10 Score=96.60 Aligned_cols=261 Identities=16% Similarity=0.157 Sum_probs=178.4
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC
Q 018876 49 LLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
++-.+... |+.|+..+|..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34444444 77999999999999999999999998 9999988888889999999999988888876654
Q ss_pred CCcchhhHHHHHHHHHccCCHHH---HHHHHHHH----HhcCCCCCHHHHHHHHHHHHhcCCHHHHHH---------HHH
Q 018876 129 CEPDVWTMNCTLRAFGNSGQIDT---MEKCYEKF----QSAGIQPSINTFNILLDSYGKAGHFEKMSA---------VME 192 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---------~~~ 192 (349)
.|.+.+|+.+..+|...||... ..+.+..+ ...|+......+-..+.+ + -+-...|.. ++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c-~-p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHC-C-PHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhccc-C-cccchhHHHHHHHHHHHHHHH
Confidence 7888999999999999999755 22222222 223433222222222222 2 122222221 222
Q ss_pred HHHhcC-CCCchHHHHH---HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876 193 YMQKYH-YSWTIVTYNI---VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 193 ~~~~~~-~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
...+.. ..|...-++. +++-+.. .+.-..++........-.|+..+|..++.+-..+|+.+.|..++.+|.+.|
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 222222 1121111111 1222221 122233333333222115899999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHH
Q 018876 269 IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 329 (349)
++.+.+.|-.|+.+ .++...+..+++.|...|+.|+..|+.-.+-.+..+|....+.+
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc
Confidence 99999888888766 88889999999999999999999999988888888776554444
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.24 E-value=9.6e-10 Score=87.36 Aligned_cols=253 Identities=8% Similarity=0.054 Sum_probs=167.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018876 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33455788888886665 223222223445566778999999877654 3443333 666666655555554445555
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018876 151 TMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
.+..-++........+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555444333332 3333333334566789999999988643 36777788899999999999999999999
Q ss_pred HhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCC
Q 018876 230 RSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCK 305 (349)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 305 (349)
.+.. .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++....+..
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 8653 33 455556655543 33689999999998775 4578899999999999999999999999998876543
Q ss_pred CCHHHHHHHHHHHHccCch-hhhHHHHHHHHHhHH
Q 018876 306 PDKVTYRTMVRAYSTNGMK-NHAKEFQDLVEKMDE 339 (349)
Q Consensus 306 p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 339 (349)
++.+...++.+....|+. +.+.+++..+.+..+
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 678888888888888887 567777777666544
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=8.2e-07 Score=74.31 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=39.5
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHH
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEH 52 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 52 (349)
+.+.|++++|++...++...+ +-+..++..-+-++.+.+++++|+.+.+.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk 71 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK 71 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh
Confidence 457889999999999999875 55667777777788888888888866543
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=7.5e-07 Score=75.31 Aligned_cols=328 Identities=13% Similarity=0.104 Sum_probs=225.8
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 018876 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQA 84 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 84 (349)
.+++...+++.+.+.+ +.+....+.....-.+...|+-++|.+........+ ..+.+.|..+.-.+....++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHH
Confidence 4566777777777776 345556666666666778899999999998887753 5677889998888888899999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-
Q 018876 85 LLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG- 163 (349)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 163 (349)
.|......+ +-|...+.-+.-.-++.++++.......+..+.. +.....|..+..++.-.|+...|..+++...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999875 4477788877777788888888888777777653 4445678888888899999999999999988765
Q ss_pred CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 018876 164 IQPSINTFNILL------DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 237 (349)
Q Consensus 164 ~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (349)
..|+...+.... ....+.|..+.|.+.+......-+. ....-..-...+.+.+++++|..++..+... .||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 346666654433 3345678888888777665443211 2233334455677888899999988888765 355
Q ss_pred HHHHHHHH-HHHHhcCChhhHH-HHHH----------------------------------HHhhCCC------------
Q 018876 238 CVTLCSLV-RAYGHAGKPEKLG-SVLR----------------------------------FIDNSDI------------ 269 (349)
Q Consensus 238 ~~~~~~l~-~~~~~~~~~~~a~-~~~~----------------------------------~~~~~~~------------ 269 (349)
...|.... .++.+-.+.-++. .+|. ...+.|+
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk 331 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK 331 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence 44443332 2221111111111 1111 1111111
Q ss_pred ----------------------------------CchHHHH--HHHHHHHHccCChHHHHHHHHHHHhcCCCCCH-HHHH
Q 018876 270 ----------------------------------MLDTVFF--NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK-VTYR 312 (349)
Q Consensus 270 ----------------------------------~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~ 312 (349)
+|....| ..++..|-+.|+++.|...++..++. .|+. ..|.
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~ 409 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYL 409 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHH
Confidence 2334433 45677788899999999999998876 5553 4455
Q ss_pred HHHHHHHccCchhhhHHHHHHHHHhHHhhh
Q 018876 313 TMVRAYSTNGMKNHAKEFQDLVEKMDETCL 342 (349)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 342 (349)
.-.+.+.+.|+.+.|..+++..++++.+-.
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 556788999999999999999988876543
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=8.6e-08 Score=73.39 Aligned_cols=283 Identities=12% Similarity=0.084 Sum_probs=178.8
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHH-HHHHHHhcCChhHH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSI-LIKSCLKAFAFDKV 82 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a 82 (349)
+..+++.|++++..-.++. +.+......|..+|....++..|-..++++... .|...-|.. -...+.+.+.+..|
T Consensus 22 ~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHH
Confidence 3445666777776666653 335666777777777777777777777777655 455544433 23556667777777
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHH--HhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018876 83 QALLSDMSTQGIRPNTVTYNTLIDA--YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
+.+...|... |+...-..-+.+ ....+++..+..++++....+ +..+.+...-...+.|+++.|.+-|+...
T Consensus 98 LrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 98 LRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHH
Confidence 7777666543 222221111221 234566666666666655322 33344444445568899999999999887
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------c---------------hHHHHHHHHH
Q 018876 161 SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-------------T---------------IVTYNIVIDA 212 (349)
Q Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~l~~~ 212 (349)
+-+--.....|+..+ +..+.++.+.|.+...++.++|++. | +..+|.-...
T Consensus 172 qvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAI 250 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAI 250 (459)
T ss_pred hhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhh
Confidence 765444566777655 4556789999999998888776531 1 1233444444
Q ss_pred HHhcCChHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHH
Q 018876 213 FGRAGDLKQMEYLFRLMRSE-RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (349)
+.+.++++.|.+.+-.|.-+ ....|+.|...+.-.= ..+++....+-+..+...++ ....+|..++-.||+..-++.
T Consensus 251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhH
Confidence 56788889998888888532 2345667766654322 23456666666666666655 346788888889999999999
Q ss_pred HHHHHHHH
Q 018876 292 MKGVLEVM 299 (349)
Q Consensus 292 a~~~~~~~ 299 (349)
|..++.+=
T Consensus 329 AADvLAEn 336 (459)
T KOG4340|consen 329 AADVLAEN 336 (459)
T ss_pred HHHHHhhC
Confidence 88887543
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=9.8e-07 Score=83.27 Aligned_cols=334 Identities=11% Similarity=0.012 Sum_probs=203.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-----CCCH--HHHHHHHHHHHhcC
Q 018876 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-----QPDV--NTYSILIKSCLKAF 77 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~~l~~~~~~~~ 77 (349)
.|+++.+...++.+.......+..........+...|+++++...+......... .+.. .....+...+...|
T Consensus 387 ~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 387 QGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG 466 (903)
T ss_pred cCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC
Confidence 4555655555555422111112223334455566788999999888876542110 1111 12222334556789
Q ss_pred ChhHHHHHHHHHHhCCCCCc----hHHHHHHHHHHhccCchHHHHHHHHHHhcc----CC-CcchhhHHHHHHHHHccCC
Q 018876 78 AFDKVQALLSDMSTQGIRPN----TVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DC-EPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 148 (349)
+++.|...+++....-...+ ....+.+...+...|++++|...+++.... +. ......+..+...+...|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 99999999988766311112 123455666677889999999988887643 11 1112344556667888999
Q ss_pred HHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHhcC
Q 018876 149 IDTMEKCYEKFQSA----GIQ--P-SINTFNILLDSYGKAGHFEKMSAVMEYMQKY----HYSWTIVTYNIVIDAFGRAG 217 (349)
Q Consensus 149 ~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~ 217 (349)
++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...+...|
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 99999988876542 211 1 2233445556677789999999988876542 11112344555666777899
Q ss_pred ChHHHHHHHHHHHhC--CCCCcHH--HH--HHHHHHHHhcCChhhHHHHHHHHhhCCCCch---HHHHHHHHHHHHccCC
Q 018876 218 DLKQMEYLFRLMRSE--RIKPSCV--TL--CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD---TVFFNCLVDAYGRLKC 288 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~--~~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 288 (349)
+++.|...+...... ....... .. ...+..+...|+.+.|...+........... ...+..+..++...|+
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence 999999988877542 1111110 10 1122344557888988888877654321111 1123456777888999
Q ss_pred hHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876 289 FAEMKGVLEVMQQR----GCKPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 289 ~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
+++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+....++.
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999887654 32222 3456667778899999999988888776654
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.13 E-value=1.8e-06 Score=73.16 Aligned_cols=222 Identities=11% Similarity=0.101 Sum_probs=144.1
Q ss_pred CchHHHHHHHHHHhccCCCc------chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcC
Q 018876 112 KMFAEMELTLVKMLSEDCEP------DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS---INTFNILLDSYGKAG 182 (349)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 182 (349)
|+..+....+.+..+. +.| -...|..+.+.|-..|+++.|..+|++..+...+-- ..+|......=.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4455555666665543 111 134577788888999999999999999887654322 345666666666777
Q ss_pred CHHHHHHHHHHHHhcCCC-----------------CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 018876 183 HFEKMSAVMEYMQKYHYS-----------------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (349)
+++.|.++++......-. -+...|+..++..-..|-++....+++.+.+..+ .++.......
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyA 518 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYA 518 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 888888888776432111 1345677777777778888889999999887764 3444444444
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCch-HHHHHHHHHHHHc---cCChHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHH
Q 018876 246 RAYGHAGKPEKLGSVLRFIDNSDIMLD-TVFFNCLVDAYGR---LKCFAEMKGVLEVMQQRGCKPDKVTYRTMV--RAYS 319 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~ 319 (349)
..+-...-++++.+++++-+..-..|+ ...|+..+..+.+ ....+.|..+|++..+ |++|...-+--|+ ..--
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Confidence 455566668888888887666533344 3467766666554 3468899999999998 6666543322222 2224
Q ss_pred ccCchhhhHHHHHHHHH
Q 018876 320 TNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 320 ~~g~~~~a~~~~~~~~~ 336 (349)
+.|...+|..++++...
T Consensus 598 e~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 598 EHGLARHAMSIYERATS 614 (835)
T ss_pred HhhHHHHHHHHHHHHHh
Confidence 45777777777776543
No 87
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=5.5e-08 Score=83.05 Aligned_cols=226 Identities=11% Similarity=-0.012 Sum_probs=177.2
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018876 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (349)
..-..+...+...|-...|..++++.. .|...+-+|...|+..+|..+..+..+. +|+...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334456677788888999999888764 5677888999999999999998888773 78998999888887
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHH
Q 018876 179 GKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLG 258 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 258 (349)
....-++.|.++.+..... .-..+.....+.+++.++.+.|+.-.+.. +....+|..+.-+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777788888888765432 11122222334788999999998876654 445678888888888999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876 259 SVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
+.|.......+ -+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+......|.+++|.+++..+..+.
T Consensus 540 ~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99988887653 367789999999999999999999999999887 3466778888888889999999999999998887
Q ss_pred HhhhccC
Q 018876 339 ETCLAMK 345 (349)
Q Consensus 339 ~~~~~~~ 345 (349)
......+
T Consensus 618 ~~~~d~~ 624 (777)
T KOG1128|consen 618 KKYKDDE 624 (777)
T ss_pred hhcccch
Confidence 7655443
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.2e-07 Score=72.69 Aligned_cols=294 Identities=13% Similarity=0.075 Sum_probs=202.5
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHH-HHH
Q 018876 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT-LID 106 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 106 (349)
--+.+.+..+.+..++++|++++..-.+.. +.+....+.+..+|....++..|...++++-.. .|...-|.. -..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 346777888889999999999998887763 347788899999999999999999999999876 456555554 345
Q ss_pred HHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018876 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
.+.+.+.+..|+++...|.+.. ..-......-.....+.+++..+..++++....| +..+.........+.|+++.
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6678899999999998887531 1111122222223456788888888888766433 44445555556678999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-------------CcHH--------HHHHHH
Q 018876 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-------------PSCV--------TLCSLV 245 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~l~ 245 (349)
|.+-|+...+.+.-.....|+..+..| +.+++..|+++..+++++|++ ||.. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999887765443577788776555 678999999999999887653 1211 112233
Q ss_pred H-------HHHhcCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018876 246 R-------AYGHAGKPEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRA 317 (349)
Q Consensus 246 ~-------~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 317 (349)
. .+.+.++++.|.+.+..|.-. ....|+.+...+.-.- ..+++.+..+-+.-+...+.- ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 3 345678888888888777532 2334666655443222 234455555556666666443 46788889899
Q ss_pred HHccCchhhhHHHHH
Q 018876 318 YSTNGMKNHAKEFQD 332 (349)
Q Consensus 318 ~~~~g~~~~a~~~~~ 332 (349)
|+++.-++-|..++.
T Consensus 320 yCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLA 334 (459)
T ss_pred HhhhHHHhHHHHHHh
Confidence 999988888776653
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=7.6e-08 Score=80.03 Aligned_cols=253 Identities=10% Similarity=0.029 Sum_probs=170.0
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCch
Q 018876 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
.-+.+.|++.+|.-.|+...+.. |.+...|..|.......++-..|+..+.+..+.. +-|......|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34567788888888888777663 5677788888888888888888888888877763 33566677777778888888
Q ss_pred HHHHHHHHHHhccCCC--------cchhhHHHHHHHHHccCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018876 115 AEMELTLVKMLSEDCE--------PDVWTMNCTLRAFGNSGQIDTMEKCYEKF-QSAGIQPSINTFNILLDSYGKAGHFE 185 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (349)
..|++.++..+....+ ++...-.. ..+.....+....++|-++ ...+..+|..+...|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8888888777543210 00000000 1222233334444444443 44444467777777877888888888
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876 186 KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 186 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
.|...|+.+....+. |..+||.|...++...+..+|+..|++.++. .|. +.+...|.-+|...|.+.+|.+.|-.+
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 888888888877644 7888888888888888888888888888765 343 344555667788888888888777554
Q ss_pred hhC---------CCCchHHHHHHHHHHHHccCChHHHHHH
Q 018876 265 DNS---------DIMLDTVFFNCLVDAYGRLKCFAEMKGV 295 (349)
Q Consensus 265 ~~~---------~~~~~~~~~~~li~~~~~~g~~~~a~~~ 295 (349)
+.. ...++..+|..|=.++...++.+.+...
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 321 1223556777777777777777755444
No 90
>PLN02789 farnesyltranstransferase
Probab=99.08 E-value=5.7e-07 Score=72.66 Aligned_cols=214 Identities=9% Similarity=-0.064 Sum_probs=124.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC-chHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Q 018876 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK-MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144 (349)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (349)
+..+-..+...+..++|+.+..+++... +-+..+|+..-.++...| .+++++..++++.+.. +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 4444445555677778888888777753 223445555555555555 5677777777777654 334445655544455
Q ss_pred ccCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc---CCh
Q 018876 145 NSGQI--DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA---GDL 219 (349)
Q Consensus 145 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 219 (349)
+.|.. +++..+++++.+.. +-+..+|+.....+...|+++++++.++++.+.++. +...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 55542 55677777776664 336677777777777777777777777777776644 566666655554443 222
Q ss_pred ----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc----CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc
Q 018876 220 ----KQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA----GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 220 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
++...+..+++... +-+...|+.+...+... ++..+|..++......++ .+......|+..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 34455554554443 34455666655555542 223446666655554432 245555566666654
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.4e-06 Score=68.79 Aligned_cols=327 Identities=14% Similarity=0.093 Sum_probs=207.3
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 81 (349)
...|+++.|+..|.+..... ++|...|..-..+|...|++++|++=-.+.++. .|+ ...|+....++.-.|++++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred cccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccHHH
Confidence 56899999999999998875 568888999999999999999999888777765 455 4679999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhcc----------------------------Cc--------------------
Q 018876 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRA----------------------------KM-------------------- 113 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------~~-------------------- 113 (349)
|+..|.+-++.. +-+...+..+..++... ..
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999998877652 22444455555444111 00
Q ss_pred ---hHHHHHHHHHH-----hccC-------CCc----------------------chhhHHHHHHHHHccCCHHHHHHHH
Q 018876 114 ---FAEMELTLVKM-----LSED-------CEP----------------------DVWTMNCTLRAFGNSGQIDTMEKCY 156 (349)
Q Consensus 114 ---~~~a~~~~~~~-----~~~~-------~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (349)
+..+...+... ...+ ..| -..-...+.++..+..++..+.+.+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 00111100000 0000 011 0111334555566666777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH-------HHHHHhcCChHHHHHHHHHH
Q 018876 157 EKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV-------IDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~ 229 (349)
....+.. -+..-++....+|...|....+...-....+.|.. ...-|+.+ ..++.+.++++.+...|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 7777654 35555666666777777777766666555554432 22223333 23445566777788777776
Q ss_pred HhCCCCCcHHHH-------------------------HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018876 230 RSERIKPSCVTL-------------------------CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 230 ~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
......|+...= ..-...+.+.|++..|...+.+++...+ -|...|....-+|.
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAACYL 403 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHH
Confidence 554434432211 1113345667888888888888887764 47788888888888
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+.|.+..|++=.+..++.+ ++....|..=..++....+++.|.+.++.-.+.++
T Consensus 404 kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 8888888887777776652 12344455545555566677777777776666554
No 92
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.01 E-value=9.6e-06 Score=68.93 Aligned_cols=152 Identities=12% Similarity=0.099 Sum_probs=76.8
Q ss_pred CCCChHHHHHHHHHHHhc-CCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876 4 KCKQPEKAHELFQAMVDE-GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (349)
++|++......|++.... -+.-....|...+......+-++.++.++++..+. ++..-+--+..+++.+++++|
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHH
Confidence 344555555555544432 12223344555555555555555555555555533 122234445555555555555
Q ss_pred HHHHHHHHhCC------CCCchHHHHHHHHHHhccCch---HHHHHHHHHHhccCCCcc--hhhHHHHHHHHHccCCHHH
Q 018876 83 QALLSDMSTQG------IRPNTVTYNTLIDAYGRAKMF---AEMELTLVKMLSEDCEPD--VWTMNCTLRAFGNSGQIDT 151 (349)
Q Consensus 83 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 151 (349)
.+.+....... .+-+...|..+-....+.-+. -....+++.+... -+| ...|..|..-|.+.|.+++
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHH
Confidence 55555543321 122333444443333333221 1222233333322 223 3567888899999999999
Q ss_pred HHHHHHHHHhc
Q 018876 152 MEKCYEKFQSA 162 (349)
Q Consensus 152 a~~~~~~~~~~ 162 (349)
|..+|++....
T Consensus 267 arDvyeeai~~ 277 (835)
T KOG2047|consen 267 ARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.01 E-value=9.9e-07 Score=80.85 Aligned_cols=206 Identities=11% Similarity=0.040 Sum_probs=98.1
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHH
Q 018876 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD---VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN 102 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (349)
+...|-.-|..+.+.+++++|.+++++....-++... ...|.++++.-..-|.-+...++|+++.+.- -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3444555555555555556655555555443221111 1233344444444444455555555554431 1223444
Q ss_pred HHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhc
Q 018876 103 TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ-PSINTFNILLDSYGKA 181 (349)
Q Consensus 103 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 181 (349)
.|...|.+.+.+++|.++++.|.+.- ......|...+..+.+..+-+.|..++.+..+.-.+ -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 55555555555555555555555442 133444555555555555555555555554443110 0122233333444455
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 018876 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK 235 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (349)
|+.+.+..+|+......++ -...|+..++.-.++|+.+.+..+|++....++.
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 5555555555555444322 3455555555555555555555555555554443
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=2.3e-07 Score=77.29 Aligned_cols=254 Identities=10% Similarity=0.005 Sum_probs=188.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018876 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
.-+.+.|++.+|.-.|+...+.. +-+...|..|...-...++-..|+..+++..+.. +-+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34678899999999999998874 4478899999999999999999999999998765 456677788888899999999
Q ss_pred HHHHHHHHHHhcCC------C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCCCchHHHHHHHHHHHhcCChHH
Q 018876 151 TMEKCYEKFQSAGI------Q--PSINTFNILLDSYGKAGHFEKMSAVMEYM-QKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 151 ~a~~~~~~~~~~~~------~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
.|.+.++.-+.... . ++...-.. ..+.....+....++|-++ ...+..+|+.....|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999988754321 0 01110000 1222222334445555444 444545788888899888999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
|.+.|+.++... +-|..+|+.|...++...+.++|+..|.++.+..+. =+++...|.-.|+..|.+++|.+.|-..+.
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999998765 567789999999999999999999999999986543 244555688899999999999988766543
Q ss_pred c---------CCCCCHHHHHHHHHHHHccCchhhhHHH
Q 018876 302 R---------GCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 302 ~---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
. +..++...|..|=.++.-.++.|-+.++
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2 1223456787777777777777755544
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=5.1e-06 Score=65.21 Aligned_cols=305 Identities=11% Similarity=0.017 Sum_probs=208.5
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHH-HH
Q 018876 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN-TL 104 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l 104 (349)
++.-..-+...+...|++.+|+.-|....+.. +.+-.++-.-...|...|+...|+.-+.+.++. +||-..-. .-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 45556667777888889999998888877642 233344445566788888888888888887775 56643221 12
Q ss_pred HHHHhccCchHHHHHHHHHHhccCCCc------------ch--hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018876 105 IDAYGRAKMFAEMELTLVKMLSEDCEP------------DV--WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT 170 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (349)
...+.+.|.++.|..-|+.+++..... .. ......+..+...|+...|+.....+.+.. +-|...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 345678899999999998888764211 11 112233455667888889999988888863 457888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH----HHH---
Q 018876 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT----LCS--- 243 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~--- 243 (349)
+..-..+|...|++..|+.=++...+..-. +..++--+-..+...|+.+.++...++..+. .||... |..
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 888888999999999998888877766533 5566666677777888888888888877654 344321 211
Q ss_pred H------HHHHHhcCChhhHHHHHHHHhhCCCCchHH---HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC-HHHHHH
Q 018876 244 L------VRAYGHAGKPEKLGSVLRFIDNSDIMLDTV---FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD-KVTYRT 313 (349)
Q Consensus 244 l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ 313 (349)
+ +......+++.++....+...+..+..... .+..+-.++...|++.+|++...+..+. .|| ..++.-
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~d 346 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHH
Confidence 1 122344566777777777766655432222 3444556677788899999888888875 444 777777
Q ss_pred HHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876 314 MVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
-..+|.-..+++.|+.-++...+.+++
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 778888888888888888877776554
No 96
>PLN02789 farnesyltranstransferase
Probab=99.00 E-value=2.6e-06 Score=68.87 Aligned_cols=215 Identities=7% Similarity=-0.006 Sum_probs=145.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 018876 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAF-AFDKVQALLSDMSTQGIRPNTVTYNTLIDA 107 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (349)
++..+-..+...++.++|+.+.+++.... +-+..+|+....++...+ ++++++..++++.... +.+..+|+..-..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 44555566777788889999998888763 344556766666666666 5788888888888764 3355667665555
Q ss_pred HhccCc--hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---C
Q 018876 108 YGRAKM--FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA---G 182 (349)
Q Consensus 108 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 182 (349)
+.+.|. .++++..++++.+.. +-+..+|+....++...|+++++++.++++++.+.. +...|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 555555 366788888887665 556778888888888888899999999998887644 666666665555544 2
Q ss_pred CH----HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876 183 HF----EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA----GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 183 ~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
.. ++......++....+. +...|+.+...+... +...+|...+.+....+ +.+...+..++..|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 4566666666666543 777888777777663 33456777777665543 3455666666666664
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.99 E-value=1.5e-06 Score=79.77 Aligned_cols=250 Identities=10% Similarity=0.066 Sum_probs=191.6
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc-CCC---cchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876 86 LSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-DCE---PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|+++.... +-+...|-..|......++.++|.++.++.+.. ++. --...|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444442 335667888898999999999999999988753 111 1134577777777777888889999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CcHHH
Q 018876 162 AGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK-PSCVT 240 (349)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 240 (349)
.- .....|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+.++-++|..++.++.+.-.+ -....
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 62 2455688999999999999999999999987633 47889999999999999999999999988764211 12334
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHH
Q 018876 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK--VTYRTMVRAY 318 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~ 318 (349)
....+..-.+.|+.+.+..+|+......++ -...|+..|+.-.++|+.+.+..+|++....++.|-. ..|...+..-
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 444555567889999999999998876543 6789999999999999999999999999999887753 5677777766
Q ss_pred HccCchhhhHHHHHHHHHhHHh
Q 018876 319 STNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
...|+-+.++.+-.+..+.-++
T Consensus 1682 k~~Gde~~vE~VKarA~EYv~s 1703 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVKARAKEYVES 1703 (1710)
T ss_pred HhcCchhhHHHHHHHHHHHHHH
Confidence 7778877766665555555443
No 98
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.97 E-value=2.3e-06 Score=73.87 Aligned_cols=285 Identities=11% Similarity=0.051 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 018876 9 EKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSD 88 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 88 (349)
.++++.+++..+.+ +.|+.+...+.--|+..++++.|.+...+..+..+ ..+...|..+.-.+.-.+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNR-GDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 46788888888775 44555555566668888999999999999888733 57888899999999999999999999888
Q ss_pred HHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc---------------------C-------CCcchhhHHHHH
Q 018876 89 MSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---------------------D-------CEPDVWTMNCTL 140 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~ 140 (349)
....- .-|-.....-+..-..-++.++++.....+..- | ..-...++..+.
T Consensus 539 al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 539 ALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 76641 111111111112222234444444433322210 0 001112222222
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 018876 141 RAFGNSGQIDTMEKCYEKFQSAGIQ--PS------INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA 212 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (349)
......+ +.+..-. .+....+. |+ ...|......+.+.+..++|...+.+..... +.....|......
T Consensus 618 ~l~a~~~--~~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 618 SLVASQL--KSAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL 693 (799)
T ss_pred HHHHhhh--hhccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence 2111100 0000000 01111111 22 2234555667788889999998888887664 3367777777788
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH--HHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018876 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS--VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
+...|.+++|.+.|......+ +-++.+.+++...+.+.|+..-|.. ++..+.+.++ .+...|..+...+.+.|+.+
T Consensus 694 ~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchH
Confidence 889999999999999887654 4456788899999999999888887 9999998875 48899999999999999999
Q ss_pred HHHHHHHHHHhc
Q 018876 291 EMKGVLEVMQQR 302 (349)
Q Consensus 291 ~a~~~~~~~~~~ 302 (349)
.|.+.|+...+.
T Consensus 772 ~Aaecf~aa~qL 783 (799)
T KOG4162|consen 772 QAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.95 E-value=8.6e-06 Score=64.00 Aligned_cols=288 Identities=10% Similarity=-0.003 Sum_probs=206.3
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHH---HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHH-HHHHHHHHHhcCCh
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTAL---LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT-YSILIKSCLKAFAF 79 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 79 (349)
..|++..|+.-|....+. |+..|..+ ...|...|+-..|+.-+..+.+. +||-.. -..-...+.+.|.+
T Consensus 50 a~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchhhhhcccH
Confidence 467888888888888774 34444444 45688889999999999988876 677543 22334567899999
Q ss_pred hHHHHHHHHHHhCCCCC--c----------hHH--HHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHc
Q 018876 80 DKVQALLSDMSTQGIRP--N----------TVT--YNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN 145 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~--~----------~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (349)
+.|..-|+..+++...- + ... ....+..+...|+...|+.....+++.. +-|...+..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence 99999999998873210 1 111 2233455667899999999999988764 5678888888999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH----HHHHH---------HHH
Q 018876 146 SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV----TYNIV---------IDA 212 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l---------~~~ 212 (349)
.|++..|+.=+....+.. ..++.++.-+-..+...|+.+.++...++..+.+ ||.. .|..+ +..
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888777664 3466667677788889999999999998888765 3322 11111 122
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCCh
Q 018876 213 FGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 289 (349)
....++|.++.+-.+...+...... ...+..+-.++...+++.+|++...++.+... .|..++-.-..+|.-...+
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhhhHHH
Confidence 3456677777777777665532212 23344555667778889999999999887543 3578888888889888899
Q ss_pred HHHHHHHHHHHhcC
Q 018876 290 AEMKGVLEVMQQRG 303 (349)
Q Consensus 290 ~~a~~~~~~~~~~~ 303 (349)
+.|+.-|+...+.+
T Consensus 358 D~AI~dye~A~e~n 371 (504)
T KOG0624|consen 358 DDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHhcC
Confidence 99998888887653
No 100
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=2.8e-06 Score=66.94 Aligned_cols=293 Identities=10% Similarity=0.112 Sum_probs=167.5
Q ss_pred ChHHHHHHHHHHHhcCCCCchhhHHHHH-HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 018876 7 QPEKAHELFQAMVDEGCDANTQSFTALL-SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQAL 85 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 85 (349)
.+++|++++.+.... .|+-...|.-+ -+|.+..-++-+.+++....+.. +.++.+.|.......+.=+-..|++-
T Consensus 166 HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchhHHH
Confidence 356788888887765 35555555444 34666666777777777666542 33444555444433332111112111
Q ss_pred HHH--------------HHhCCC------------CC-----chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchh
Q 018876 86 LSD--------------MSTQGI------------RP-----NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW 134 (349)
Q Consensus 86 ~~~--------------~~~~~~------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 134 (349)
... +.++++ -| -+..--.|+-.|.+.++..+|..+.+++..- .|-..
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Ey 319 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEY 319 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHH
Confidence 111 111110 01 0122233445677888888888887776411 22222
Q ss_pred hHHHHHHH-----HHccCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 018876 135 TMNCTLRA-----FGNSGQIDTMEKCYEKFQSAGIQPSI-NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNI 208 (349)
Q Consensus 135 ~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (349)
....+..+ .......+-|.+.|+..-+++..-|+ .--..+...+.-..++++++..+..+...-...|...+ .
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-N 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-H
Confidence 22222111 12222345566666665554433222 12334555556666788888888887776444344444 4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHH-HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC-SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
+.++.+..|++.+|+++|-.+....++ +..+|. .+.++|.+.+.++.|+.++-.+...+ -.......+..-|.+.+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~--e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS--ERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch--hHHHHHHHHHHHHHHHH
Confidence 778889999999999999877654443 445554 45688889999999988876665432 12233445566788899
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHH
Q 018876 288 CFAEMKGVLEVMQQRGCKPDKVTY 311 (349)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~p~~~~~ 311 (349)
.+--|.+.|+.+...+ |++..|
T Consensus 476 eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 476 EFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHhhhHHHccC--CCcccc
Confidence 9888989998888764 444433
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=4.7e-07 Score=77.57 Aligned_cols=219 Identities=10% Similarity=-0.016 Sum_probs=155.0
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHH
Q 018876 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
|--..-..+...+...|-...|..+|+++. .|.-++.+|...|+..+|..+..+..+. +|+...|..+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 333334456677888888888888887654 4556777888888888888888877773 6788888888
Q ss_pred HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018876 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
.+......-+++|.++.+....+ .-..+.....+.+++.++.+.|+.-.+.. +....+|-.+-.+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88777766777787777665432 11112222234677888888887766653 34566777777777788888
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
+.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-.....|.++.|.+.+.++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888888777665433 56778888888888888888888888877766 455667777777777888888888877766
Q ss_pred h
Q 018876 265 D 265 (349)
Q Consensus 265 ~ 265 (349)
.
T Consensus 614 l 614 (777)
T KOG1128|consen 614 L 614 (777)
T ss_pred H
Confidence 4
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=3.3e-09 Score=54.15 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=18.8
Q ss_pred CCCchHHHHHHHHHHHHccCChHHHHHHHHHH
Q 018876 268 DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 268 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 299 (349)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555666666666666666666666665555
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=1.1e-06 Score=68.76 Aligned_cols=187 Identities=10% Similarity=0.017 Sum_probs=113.4
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch--HHHH
Q 018876 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYN 102 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 102 (349)
....+..+...+...|++++|...|+++....+-.|. ..++..+..++...|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3455666677777788888888888777665211111 135566677777788888888888887765321111 1344
Q ss_pred HHHHHHhcc--------CchHHHHHHHHHHhccCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018876 103 TLIDAYGRA--------KMFAEMELTLVKMLSEDCEPDV-WTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI 173 (349)
Q Consensus 103 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (349)
.+..++... |++++|.+.++++.... |+. ..+..+..... ... .. ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 444444433 56777777777776542 222 11111111000 000 00 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876 174 LLDSYGKAGHFEKMSAVMEYMQKYHY--SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+...+.+.|++++|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55678889999999999998877642 223578888899999999999999988887654
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=2.3e-05 Score=74.21 Aligned_cols=299 Identities=12% Similarity=0.032 Sum_probs=192.8
Q ss_pred CCCChHHHHHHHHHHHhcCC------CCc--hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHH
Q 018876 4 KCKQPEKAHELFQAMVDEGC------DAN--TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIK 71 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~ 71 (349)
..|++++|...+....+.-- .+. ......+...+...|++++|...++....... ..+. ...+.+..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGE 499 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHH
Confidence 46889999998887754310 111 11222334456789999999999998765311 1221 34455666
Q ss_pred HHHhcCChhHHHHHHHHHHhC----CC-CCchHHHHHHHHHHhccCchHHHHHHHHHHhcc----CCC--c-chhhHHHH
Q 018876 72 SCLKAFAFDKVQALLSDMSTQ----GI-RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE----DCE--P-DVWTMNCT 139 (349)
Q Consensus 72 ~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l 139 (349)
.+...|++++|...+.+.... |. .....++..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 778899999999998887653 11 111234555667788899999999998876543 211 1 22334455
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHH-----HHH
Q 018876 140 LRAFGNSGQIDTMEKCYEKFQSAG--IQP--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTY-----NIV 209 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l 209 (349)
...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|...+.......... ....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 566777899999999988875531 112 23344556667888999999999998875431110 11111 112
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc-hHHHHHHHHH
Q 018876 210 IDAFGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNS----DIML-DTVFFNCLVD 281 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~ 281 (349)
+..+...|+.+.|...+........... ...+..+..++...|+.++|...++..... +..+ ...+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 2444568899999998877543221111 111345677888999999999999887542 3222 2345667788
Q ss_pred HHHccCChHHHHHHHHHHHhcC
Q 018876 282 AYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~~ 303 (349)
++.+.|+.++|...+.+..+..
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999999988764
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.86 E-value=2e-06 Score=64.79 Aligned_cols=120 Identities=8% Similarity=-0.002 Sum_probs=77.2
Q ss_pred cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 018876 111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY-GKAGH--FEKM 187 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 187 (349)
.++.+++...+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655554 5566667777777777777777777777766654 33566666666543 45555 4677
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876 188 SAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
..++++..+.++. +...+..+...+...|++++|...|+.+.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777777766544 56666666667777777777777777776554
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.85 E-value=5e-09 Score=53.45 Aligned_cols=32 Identities=31% Similarity=0.836 Sum_probs=17.8
Q ss_pred CCCCchhhHHHHHHHHHcCCChhHHHHHHHHh
Q 018876 22 GCDANTQSFTALLSAYGRSGLFDKAFSLLEHM 53 (349)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 53 (349)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=2.6e-06 Score=64.35 Aligned_cols=160 Identities=14% Similarity=0.036 Sum_probs=120.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 018876 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|...+++..... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55666777778877777777665443 23466666678888888888888888888887765 45888888888888888
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHH
Q 018876 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 296 (349)
|+.+.|..-|.+..+.. .-++..++.+...+.-.|+.+.|..++......+. -|..+-..+..+....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888888887653 33456777888888888888888888888876653 36667777888888888888888776
Q ss_pred HHHH
Q 018876 297 EVMQ 300 (349)
Q Consensus 297 ~~~~ 300 (349)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5443
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=2.2e-06 Score=67.07 Aligned_cols=187 Identities=14% Similarity=0.051 Sum_probs=122.4
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch--H
Q 018876 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS---INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTI--V 204 (349)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 204 (349)
......+..+...+...|++++|...++++..... .+ ...+..+..++...|++++|...++++.+..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 33456677777888889999999999998877532 12 245677778888999999999999988876533111 1
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH
Q 018876 205 TYNIVIDAFGRA--------GDLKQMEYLFRLMRSERIKPSC-VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF 275 (349)
Q Consensus 205 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (349)
++..+..++... |++++|...++.+.... |+. ..+..+..... .. ... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~------~~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR------NRL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH------HHH--------HHH
Confidence 344444555443 66778888888877653 332 22221111100 00 000 011
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCC-CC-CHHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGC-KP-DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
...+...|.+.|++.+|...++...+... .| ....+..+..++...|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12456678899999999999999887632 12 3567888999999999999999887776543
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.82 E-value=3.9e-06 Score=63.38 Aligned_cols=159 Identities=13% Similarity=0.007 Sum_probs=105.5
Q ss_pred HHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876 102 NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 102 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
..+-..+.-.|+-+....+..+..... +.|....+..+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445555666666666666655543221 3344445556777777777777777777776653 56777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018876 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 261 (349)
|+++.|..-|.+..+.... ++..++.+...+.-.|+.+.|..++......+ .-+..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777777766433 56667777777777777777777777776554 335566666777777777777777765
Q ss_pred HHH
Q 018876 262 RFI 264 (349)
Q Consensus 262 ~~~ 264 (349)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
No 110
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=4.8e-05 Score=64.17 Aligned_cols=124 Identities=14% Similarity=0.048 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC------CC
Q 018876 204 VTYNIVIDAFGRAGDLKQMEYLFR--------LMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS------DI 269 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 269 (349)
...-..+......|+++.|.+++. .+.+.+..| .+...+...+.+.++-+.|..++...... +-
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 344455566667788888887777 443333333 55666666677777766666666554321 00
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHH
Q 018876 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
.--..++..+...-.+.|+-++|..+++++.+.+ ++|..+...++.+|++. +++.|..+-
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 0111223333444456788888888888888753 45778888888888775 355555543
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=5.5e-07 Score=67.77 Aligned_cols=132 Identities=13% Similarity=0.096 Sum_probs=101.2
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHH-hccCc--hHH
Q 018876 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAY-GRAKM--FAE 116 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~ 116 (349)
.++.+++...++...+.. +.|...|..+...+...|++++|...|++..+.. +-+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 666778887777777653 6788889999999999999999999999988875 33677777777764 56676 589
Q ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018876 117 MELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
|.+++++..+.+ +.+...+..+...+...|++++|...|+++.+.. +|+..-+. +|..
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH-HHHH
Confidence 999999998875 4467778888888889999999999999988874 44444443 3343
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.81 E-value=4.8e-05 Score=63.51 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018876 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
.-+|..++....+..-+..|..+|.++.+.+..+ ...+.++++..+| .++.+-|.++|+.-.+.- .-++..-...+.
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHH
Confidence 4467777777778888899999999998887666 6677788887665 578888999998755432 224555567788
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCchhhhHHHHHHHHH
Q 018876 282 AYGRLKCFAEMKGVLEVMQQRGCKPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
-+...++-..+..+|++....++.|+ ...|..+|.--..-|+...+.++-++...
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88889999999999999998866665 47899999988889998888877665433
No 113
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=2.1e-05 Score=68.96 Aligned_cols=302 Identities=11% Similarity=0.071 Sum_probs=175.1
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC--------CCCHHHHHHHHHHH
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC--------QPDVNTYSILIKSC 73 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~l~~~~ 73 (349)
|...|+.+.|.+-++.+.. ..+|..+.+.|.+.++++-|.-.+-.|....+. .|+ ..-....-..
T Consensus 738 yvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 4567888988887777654 468999999999999998887777666543211 121 2222223334
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018876 74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
...|..++|+.+|.+-.+. ..|=..|-..|.|++|.++-+.--+..+. .||.....-+...++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHH
Confidence 5778889999998887653 34445677788999998877654332222 34555555556667777777
Q ss_pred HHHHHHHh----------cC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------
Q 018876 154 KCYEKFQS----------AG---------IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHY--------------- 199 (349)
Q Consensus 154 ~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------- 199 (349)
+.|++... .. -..|...|......+-..|+.+.|+.++......-.
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa 958 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAA 958 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHH
Confidence 77654321 10 122445556666666677888888888776543210
Q ss_pred -----CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh---------------HHH
Q 018876 200 -----SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK---------------LGS 259 (349)
Q Consensus 200 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------a~~ 259 (349)
.-|....-.+.+.|-..|++.+|..+|.+.. +|...|+.|-..+--++ |-+
T Consensus 959 ~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aAr 1029 (1416)
T KOG3617|consen 959 RIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAAR 1029 (1416)
T ss_pred HHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHH
Confidence 1123333445555555555555555555442 22233332222211111 111
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHH--------HHHhcC--CCCCHHHHHHHHHHHHccCchhhhHH
Q 018876 260 VLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE--------VMQQRG--CKPDKVTYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 329 (349)
.|++ .|. -+...+..|-+.|.+.+|+++-- +++..+ ...|+...+.-..-+....++++|..
T Consensus 1030 YyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1030 YYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVN 1101 (1416)
T ss_pred HHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 1111 110 11233455677777777766521 122222 33467777777788888899999999
Q ss_pred HHHHHHHhHH
Q 018876 330 FQDLVEKMDE 339 (349)
Q Consensus 330 ~~~~~~~~~~ 339 (349)
++-..++++.
T Consensus 1102 lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1102 LLCLAREFSG 1111 (1416)
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1e-05 Score=61.30 Aligned_cols=251 Identities=12% Similarity=0.095 Sum_probs=157.2
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc
Q 018876 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM 113 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (349)
++-+.-.|++..++..-...... +.+...-.-+-++|...|.+.....-. .. |-.|....+..+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcch
Confidence 34455567888777776665544 234444444566777777766544322 22 223444444444444444444
Q ss_pred hHHHH-HHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018876 114 FAEME-LTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 114 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
.++.. ++.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+.+-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 334444444334443444444566888899999988876621 33333333455667788889999999
Q ss_pred HHHhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876 193 YMQKYHYSWTIVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
+|.+.. +..+.+.|..++.+ .+.+.+|.-+|++|-++ .+|++.+.+-...++...|++++|..+++......
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 988764 66777777777653 45678888899988643 57888888888888889999999999998888776
Q ss_pred CCchHHHHHHHHHHHHccCCh-HHHHHHHHHHHhc
Q 018876 269 IMLDTVFFNCLVDAYGRLKCF-AEMKGVLEVMQQR 302 (349)
Q Consensus 269 ~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~ 302 (349)
.. ++.+...++..-...|.. +...+.+.+++..
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 54 555555555555555554 3445566666654
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.80 E-value=1.3e-05 Score=72.52 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=95.3
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHH
Q 018876 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV-NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++...+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 4666777888887888888888888766655 2332 2233333345555554443333 22
Q ss_pred HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018876 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHF 184 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (349)
+.......++..+..++..+... .-+...+..+..+|-+.|+.+++..+|+++.+.. +-|..+.+.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 22233333333333333333332 2233355666777777777777777777777765 44677777777777777 77
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876 185 EKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
++|..++.+.... +...+++..+.++|.++..
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence 7777777666543 3334455555555555544
No 116
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.3e-05 Score=64.35 Aligned_cols=297 Identities=14% Similarity=0.022 Sum_probs=195.5
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-hHHHHHHHHHHhccCc
Q 018876 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN-TVTYNTLIDAYGRAKM 113 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 113 (349)
.+....|+++.|+..|.+....+ ++|...|+.-..++...|++++|.+=-.+-++. .|+ ..-|.....++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 45668899999999999998875 678899999999999999999998776666654 455 4578888888889999
Q ss_pred hHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc---C-------------------------------------------
Q 018876 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS---G------------------------------------------- 147 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~------------------------------------------- 147 (349)
+++|...|.+-++.. +.+...++-+..++... +
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999998877653 33344444444443110 0
Q ss_pred --CHHHHHHHHHHHHh--------cC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHH
Q 018876 148 --QIDTMEKCYEKFQS--------AG-------IQP------------S----------INTFNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 148 --~~~~a~~~~~~~~~--------~~-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~ 188 (349)
+.+...+....+.. .+ ..| | ..-...+.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00000000000000 00 011 0 011244555566666777777
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH-------HHHHHHhcCChhhHHHHH
Q 018876 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS-------LVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~ 261 (349)
+-+....+.. -+..-++....+|...|.+......-....+.|- -...-|+. +..++.+.++++.+...+
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 7777776665 3566667777788888888777776666655542 12222333 333556667788888888
Q ss_pred HHHhhCCCCchHH-------------------------HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876 262 RFIDNSDIMLDTV-------------------------FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 262 ~~~~~~~~~~~~~-------------------------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 316 (349)
.+.......|+.. -...-...+.+.|++..|...|.+++... +-|...|..-.-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 7765433333211 11122555778899999999999999986 337889999999
Q ss_pred HHHccCchhhhHHHHHHHHHhHHh
Q 018876 317 AYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+|.+.|.+..|..-.+...+++++
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCch
Confidence 999999999998876666666543
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=1.7e-06 Score=61.59 Aligned_cols=108 Identities=6% Similarity=-0.054 Sum_probs=78.4
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876 13 ELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.+|++..+. .|+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+.....
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455665554 233 35556677778888888888888877663 557777778888888888888888888888776
Q ss_pred CCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876 93 GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
. +.+...+..+..++...|++++|...|+.....
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 346677777777888888888888888887765
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=4.3e-05 Score=58.03 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=45.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC
Q 018876 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH----AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC 288 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 288 (349)
+.+..+.+-|...+++|.+. .+..+.+.|..++.+ .+.+..|.-+|+++.+. ..|++.+.+-...++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 33444444555555554432 123334433333332 12344444455554442 22444444444444555555
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 018876 289 FAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 289 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
+++|..++++....... ++.+...++.+-...|
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 55555555554444322 3444444443333333
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=3.5e-05 Score=68.99 Aligned_cols=146 Identities=11% Similarity=-0.005 Sum_probs=103.4
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 018876 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIV 209 (349)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (349)
..++..+..|.....+.|.+++|+.+++.+.+.. +-+......+...+.+.+++++|....++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 4456777777777788888888888888877763 335556667777778888888888888887776644 66667777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHH
Q 018876 210 IDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCL 279 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (349)
..++...|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+..- +-...|+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHH
Confidence 777778888888888888877633 34467777777778888888888888877766432 333444443
No 120
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.00012 Score=65.87 Aligned_cols=277 Identities=13% Similarity=0.131 Sum_probs=131.1
Q ss_pred HHHHHHHhcCCC--CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018876 13 ELFQAMVDEGCD--ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDC-QPDVNTYSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 13 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 89 (349)
+++++..+.+++ .|+......+.++...+-..+-+++++++.-.+.. ..+...-|.|+-...+. +..++.+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 344444444332 24455556666677777777777777776543221 12222333333333333 334444454444
Q ss_pred HhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC---------------------CCcchhhHHHHHHHHHccCC
Q 018876 90 STQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED---------------------CEPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~ 148 (349)
-.-. .|+ +...+...+-+++|..+|++..-.+ --..+..|..+..+-.+.|.
T Consensus 1047 dnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1047 DNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred ccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence 3321 111 1222333344445555444331100 00112334444444444444
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 018876 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
..+|.+-|-+ ..|+..|..+++...+.|.+++-.+.+...++..-.|... +.|+-+|++.++..+.++++.
T Consensus 1120 v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-
Confidence 4444443322 1144445555555555555555555554444443333222 244445555555444333321
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCH
Q 018876 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 308 (349)
-|+......+..-|...+.++.|.-++.. ..-|..|...+...|+++.|...-+.. .+.
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 24444444455555555555555444432 234556666677777777776544322 267
Q ss_pred HHHHHHHHHHHccCchhhh
Q 018876 309 VTYRTMVRAYSTNGMKNHA 327 (349)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a 327 (349)
.||..+-.+|...+.+.-|
T Consensus 1250 ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH
Confidence 7888888888777665544
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=3.4e-06 Score=60.08 Aligned_cols=87 Identities=3% Similarity=-0.057 Sum_probs=34.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018876 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (349)
.+...|++++|...|+......+. +...|..+..++...|++++|...|+...... +.+...+..+..++...|++++
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 333444444444444443333211 33333444444444444444444444443322 2233333333344444444444
Q ss_pred HHHHHHHHh
Q 018876 257 LGSVLRFID 265 (349)
Q Consensus 257 a~~~~~~~~ 265 (349)
|...++...
T Consensus 111 Ai~~~~~Al 119 (144)
T PRK15359 111 AREAFQTAI 119 (144)
T ss_pred HHHHHHHHH
Confidence 444444433
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.69 E-value=1.6e-05 Score=71.16 Aligned_cols=148 Identities=8% Similarity=0.007 Sum_probs=120.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH
Q 018876 164 IQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS 243 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.+.+...+..|.....+.|..++|..+++...+..+. +......++..+.+.+++++|...+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4556888888999999999999999999999887644 67777888889999999999999999988765 456677788
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018876 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMV 315 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 315 (349)
+..++...|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+.- .|-...|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 88889999999999999999988543 357888889999999999999999999988762 23445544443
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=5.4e-05 Score=57.07 Aligned_cols=188 Identities=9% Similarity=-0.007 Sum_probs=112.5
Q ss_pred CChhHHHHHHHHHHhC---C-CCCchH-HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHH
Q 018876 77 FAFDKVQALLSDMSTQ---G-IRPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDT 151 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (349)
.+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++..+- +-+...-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4556666666655432 3 334443 23445555666677777777777766553 2222222222223445677777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876 152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
|.++++.+.+.+ +.|..++.--+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777777765 446666666666666667766777776666655 334777788887788888888888777777765
Q ss_pred CCCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCC
Q 018876 232 ERIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSD 268 (349)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~ 268 (349)
.. |.++..+..+...+...|. .+.+.+.+....+..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 43 3344445555555544443 455667777666654
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=8.3e-06 Score=73.80 Aligned_cols=251 Identities=11% Similarity=0.099 Sum_probs=169.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchH-HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHH
Q 018876 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC 138 (349)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 138 (349)
+.+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+...++..++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 556788999999999999999999999977765 34433 333333456666664444433 3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 018876 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
++.......++..+..+...+.+.+ -+...+..+..+|-+.|+.++|..+++++.+..+. ++...|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 3444445555555555556666643 35557888999999999999999999999999844 899999999999999 9
Q ss_pred hHHHHHHHHHHHhCCCCCcHHHHHHHHH---HHH--hcCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHccCChHHH
Q 018876 219 LKQMEYLFRLMRSERIKPSCVTLCSLVR---AYG--HAGKPEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
.++|..++.+....-+ +..-|+.+.. -++ ...+.+...++.+.+... +..--..++-.+-..|-..++|+++
T Consensus 165 L~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 165 KEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 9999999988875411 1111111111 111 223344455555555443 3333455666777888889999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 293 KGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 293 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
..+++.+.+.... |.....-++.+|. +.+.. ...++...++..
T Consensus 243 i~iLK~iL~~~~~-n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 243 IYILKKILEHDNK-NNKAREELIRFYK--EKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHHHHHHhcCCc-chhhHHHHHHHHH--HHccC-cchHHHHHHHhc
Confidence 9999999988544 6677788888776 33333 445555555543
No 125
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00011 Score=65.99 Aligned_cols=261 Identities=16% Similarity=0.182 Sum_probs=134.6
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHH
Q 018876 41 GLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELT 120 (349)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 120 (349)
+.+++|.+.-++.. .+..|+.+..+-.+.+.+.+|.+-|-+. -|+..|.-++....+.|.+++..+.
T Consensus 1089 ~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred hhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 44555555444332 2356667777777777777766555322 1556677777777777777777777
Q ss_pred HHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018876 121 LVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS 200 (349)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 200 (349)
+...++..-.|... +.++-+|++.++..+.++++ ..|+......+.+-|...+.++.|.-++..
T Consensus 1156 L~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------- 1219 (1666)
T KOG0985|consen 1156 LLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN------- 1219 (1666)
T ss_pred HHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH-------
Confidence 76666555455443 45666777777766655443 234555555555556666666655555542
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHH------------------------hCCCCCcHHHHHHHHHHHHhcCChhh
Q 018876 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMR------------------------SERIKPSCVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (349)
+..|..|...+...|++..|.+.-++.- ..++.....-...++..|...|-+++
T Consensus 1220 --vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1220 --VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHH
Confidence 3344555555555555555554443321 01111122223334444444444444
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHH
Q 018876 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
...+++...... ......|+.|.-.|++-. +++..+-++-.- +....-.+++++-+.--|.+..-++...++
T Consensus 1298 lIsl~Ea~LGLE-RAHMgmfTELaiLYskyk-p~km~EHl~LFw------sRvNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1298 LISLLEAGLGLE-RAHMGMFTELAILYSKYK-PEKMMEHLKLFW------SRVNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHhhhchh-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHH------HhcchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444444433221 123334444444444432 222222222211 111223467777777777777777777766
Q ss_pred hHHh
Q 018876 337 MDET 340 (349)
Q Consensus 337 ~~~~ 340 (349)
.+..
T Consensus 1370 yDNA 1373 (1666)
T KOG0985|consen 1370 YDNA 1373 (1666)
T ss_pred hhHH
Confidence 6543
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=0.00016 Score=59.80 Aligned_cols=121 Identities=17% Similarity=0.056 Sum_probs=89.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCChh
Q 018876 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 255 (349)
.+...|+.++|+..++.+....+ -|+..+......+...++.++|.+.++++.... |+ ......+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence 45567888888888888777643 366666677778888888888888888887653 43 556667778888888888
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
+|..+++....... -|+..|..|..+|...|+..++.....++..
T Consensus 392 eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 88888888776654 4788888888888888887777766555443
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=8.8e-05 Score=55.99 Aligned_cols=190 Identities=12% Similarity=0.085 Sum_probs=139.9
Q ss_pred CCChhHHHHHHHHhhcCC--C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchH
Q 018876 40 SGLFDKAFSLLEHMKNTP--D-CQPDVN-TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~--~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (349)
..+.++.++++.++.... + ..++.. .|..++-+....++.+.|...++.+... ++-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 356777778777775431 1 234443 4666777888899999999999998876 3334333333334455679999
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018876 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
+|.++++.+.+.+ +.|..++..-+...-..|+.-+|++-+....+. +..|...|..+...|...|+++.|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999887 667777777777777778888888888887776 56799999999999999999999999999998
Q ss_pred hcCCCCchHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCC
Q 018876 196 KYHYSWTIVTYNIVIDAFGRAG---DLKQMEYLFRLMRSER 233 (349)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 233 (349)
-..+. ++..+..+...+.-.| +...+..+|.+..+..
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 76532 5555566666554433 5667888888887654
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=4.1e-06 Score=59.22 Aligned_cols=110 Identities=9% Similarity=0.059 Sum_probs=66.5
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 018876 14 LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG 93 (349)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 93 (349)
.|+...+.. +.+......+...+...|++++|.+.|+.+.... +.+...+..+..++...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444432 2234445556666666777777777776666542 3455666666666666777777777776666553
Q ss_pred CCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876 94 IRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
+.+...+..+..++...|++++|...++...+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334555556666666667777777766666654
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=0.00014 Score=60.14 Aligned_cols=119 Identities=11% Similarity=-0.034 Sum_probs=74.3
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHH
Q 018876 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQM 222 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (349)
+...|++++|+..+..+.... +.|..........+.+.++..+|.+.++++....+. .....-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence 345566777777777766552 335555556666667777777777777776665422 245555566666777777777
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
+.+++...... +-|+..|..|.++|...|+..++.....+.
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77776665443 556666777777777777766666555443
No 130
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=2.8e-05 Score=68.19 Aligned_cols=240 Identities=14% Similarity=0.102 Sum_probs=165.3
Q ss_pred chhhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------C
Q 018876 26 NTQSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-G--------I 94 (349)
Q Consensus 26 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~ 94 (349)
|..+-..++.. |...|+.+.|.+-.+.++. ...|..+.+.|.+.++.+-|.-.+..|... | .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 55666666654 7788999999888876653 468999999999999988887777666432 1 1
Q ss_pred CCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018876 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNIL 174 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 174 (349)
.|+ .+=....-.....|.+++|..+|++..+ |..+=+.|-..|.+++|.++-+.=-... =..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 222 2222233334567999999999999874 3445566778899999998765432221 23566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----------cCC---------CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 018876 175 LDSYGKAGHFEKMSAVMEYMQK----------YHY---------SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIK 235 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~----------~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (349)
...+-..++.+.|++.|++... ..+ ..|...|.-....+-..|+.+.|+.+|.....
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 7777778888888888775321 111 12456666667777788888888888876642
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 018876 236 PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 300 (349)
|.++++..|-.|+.++|-++-++-. |......+.+.|-..|++.+|..+|.+..
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5566777778888888877765432 44455567888888888888888877654
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.55 E-value=7.8e-06 Score=57.82 Aligned_cols=97 Identities=10% Similarity=-0.029 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 018876 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAY 283 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (349)
.....+...+...|++++|...++.+...+ +.+...+..+...+...|+++.|...++...+.+. .+...+..+...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 334444455555566666666665555433 33445555555555556666666666655554432 2444555555566
Q ss_pred HccCChHHHHHHHHHHHhc
Q 018876 284 GRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 284 ~~~g~~~~a~~~~~~~~~~ 302 (349)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666655554
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.52 E-value=3.6e-05 Score=68.84 Aligned_cols=82 Identities=10% Similarity=-0.074 Sum_probs=51.0
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018876 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
.|...+....+..- -+..+|+.|... ...|++.-|.-.|-.-.... +....+|..+...+.+..+++.|...+..++
T Consensus 801 ~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 45555555554432 356667766555 55566666655554444332 2256677777777888888888888888777
Q ss_pred HhHHh
Q 018876 336 KMDET 340 (349)
Q Consensus 336 ~~~~~ 340 (349)
.+++.
T Consensus 878 SLdP~ 882 (1238)
T KOG1127|consen 878 SLDPL 882 (1238)
T ss_pred hcCch
Confidence 76654
No 133
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.49 E-value=6e-05 Score=65.53 Aligned_cols=134 Identities=15% Similarity=0.171 Sum_probs=77.2
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 018876 142 AFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQ 221 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 221 (349)
+.....++.+|+.+++.+.... .-..-|..+...|...|+++.|.++|-+. ..++-.|..|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3445566667777776666542 23334566667777777787777777542 234456677778888888
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHH
Q 018876 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLE 297 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 297 (349)
|.++-.+.. |.......|..-..-.-+.|++.+|.+++-.+.. |+ ..|..|-+.|..+..+++.+
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHH
Confidence 777766543 3233445555555555666666666665533322 22 13444555555555555444
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.47 E-value=3.6e-05 Score=55.04 Aligned_cols=125 Identities=17% Similarity=0.139 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--HHHHHHHHH
Q 018876 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS--CVTLCSLVR 246 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 246 (349)
|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+........|+ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33334333 35555555555555555432210 12222233455556666666666666655432221 122333455
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHH
Q 018876 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
.+...|++++|...++...... ..+..+......|.+.|++++|...|+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5556666666666665533322 2344555556666666666666666554
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.46 E-value=0.00092 Score=59.56 Aligned_cols=222 Identities=16% Similarity=0.121 Sum_probs=152.0
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
..+++..|.+....+.+. .|+.. |...+.+ +.+.|+.++|..+++.....+ ..|..+...+-.+|.+.+..++
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhH
Confidence 467889999999988876 35543 3344444 668999999999998887664 3488899999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccC-C---------HHH
Q 018876 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSG-Q---------IDT 151 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~ 151 (349)
|..+|++.... .|+......+..+|.+.+++.+-.+.--++.+.- +-+...+=.+++.....- . ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-PKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999998876 5778888888899999988776555554444431 223333333333333211 1 223
Q ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018876 152 MEKCYEKFQSAG-IQPSINTFNILLDSYGKAGHFEKMSAVME-YMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 152 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
|.+.++.+.+.+ ..-+..-.......+...|++++|..++. ..-+.-..-+...-+.-+..+...++|.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 566666666554 21122222233344567889999999994 3434333445555567778888899999999999998
Q ss_pred HhCC
Q 018876 230 RSER 233 (349)
Q Consensus 230 ~~~~ 233 (349)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8876
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.43 E-value=4.8e-07 Score=46.90 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=29.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 307 (349)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999988887
No 137
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.42 E-value=8.2e-06 Score=67.83 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=76.1
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHH
Q 018876 201 WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNC 278 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (349)
.+......++..+....+.+.+..++.+.+.. ....-+.|..++++.|...|..+.+..+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 35555666666666666666666666666543 1112223445677777777777777777766666677777777777
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 018876 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
|+..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777666665555666655555555444
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.41 E-value=0.00012 Score=63.76 Aligned_cols=137 Identities=18% Similarity=0.274 Sum_probs=91.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018876 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
+.+.....+|.+|+.+++.++.... -..-|..+.+.|...|+++.|.++|-+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3445566777788888877776543 2445667778888888888888887643 2244556778888888
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHH
Q 018876 255 EKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
+.|.++-.+... +......|-.-..-+-++|++.+|.+++-.. | .|+ ..|..|-+.|..+..+++.++
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 888777665543 3345556666666677788888887776332 2 234 246778888888877776553
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.40 E-value=5.8e-07 Score=46.21 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCC
Q 018876 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP 306 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 306 (349)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=4.3e-05 Score=54.67 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch--HHHHHH
Q 018876 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD--TVFFNC 278 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 278 (349)
..|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......++ ......
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4455555555 4788899999999988763 222 23444566888999999999999999998764333 234555
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHH
Q 018876 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDL 333 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 333 (349)
+...+...|++++|+..++...... .....+......|.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7888999999999999997754432 3556677888899999999999999875
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.39 E-value=2.9e-05 Score=64.31 Aligned_cols=124 Identities=12% Similarity=0.021 Sum_probs=75.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 018876 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
..++..+...++++.|.++++++.+.. |+ ....+++.+...++..+|.+++.+..+.... +...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 344455555666777777777766653 33 2334556666666666677666666654322 555555556666667
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
++++.|..+.+++.... +-+..+|..|..+|...|+++.|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77777777777666542 33345666677777777777777766665543
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.39 E-value=0.0014 Score=58.44 Aligned_cols=225 Identities=9% Similarity=0.032 Sum_probs=154.1
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCch
Q 018876 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS--CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
....+++..|+....++.+. .|+.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.
T Consensus 19 ~ld~~qfkkal~~~~kllkk---~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK---HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH---CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 34678899999999998887 45543 3333333 45889999999999988777644 888999999999999999
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------H
Q 018876 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH----------F 184 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~ 184 (349)
++|..+|++..+. .|+......+..+|.+.+++.+-.+.--++-+. .+-+...+-.+++.....-. .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999999866 667777888888999999887755555555443 33344444455554443211 2
Q ss_pred HHHHHHHHHHHhcC-CCCchHHHHHHHHHHHhcCChHHHHHHHHH-HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHH
Q 018876 185 EKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAGDLKQMEYLFRL-MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLR 262 (349)
Q Consensus 185 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 262 (349)
.-|.+.++.+.+.+ .--+..-...-...+...|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++..
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 34556666665544 111222223333445678899999999943 3333334444555566777888888888888888
Q ss_pred HHhhCCC
Q 018876 263 FIDNSDI 269 (349)
Q Consensus 263 ~~~~~~~ 269 (349)
++...+.
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 8877764
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.38 E-value=2.9e-05 Score=64.32 Aligned_cols=126 Identities=11% Similarity=0.087 Sum_probs=100.2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG 179 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (349)
....|+..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++++..+.. +.+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34456667777789999999999998764 44 34457778878888888999998888653 446777777778888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876 180 KAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+.++.+.|..+.+++.+..+. +..+|..|..+|...|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999999887533 677999999999999999999988887653
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.32 E-value=1.7e-05 Score=66.07 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=98.1
Q ss_pred CCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc--CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018876 93 GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE--DCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT 170 (349)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (349)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|...|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45667778888888888888888888888888765 2223345667889999999999999999888888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 018876 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRA 216 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (349)
++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988887666555667776666666555
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.5e-06 Score=45.02 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 018876 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPN 97 (349)
Q Consensus 65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (349)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.29 E-value=1.6e-06 Score=44.49 Aligned_cols=32 Identities=38% Similarity=0.692 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 018876 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRP 96 (349)
Q Consensus 65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 96 (349)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 147
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.24 E-value=0.00071 Score=61.05 Aligned_cols=218 Identities=11% Similarity=0.012 Sum_probs=147.4
Q ss_pred chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018876 113 MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
+...++..|-+..+.. +.-...|..|...|+..-+...|.+.|.+..+.. ..+..........|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3666666666655443 2224578888888888888889999999988875 3377788889999999999999998843
Q ss_pred HHHhcCC-CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 018876 193 YMQKYHY-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIML 271 (349)
Q Consensus 193 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (349)
..-+... ..-...|....-.|...++...|..-|+...... +.|...|..+.++|.+.|++..|.++|.++....+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~- 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL- 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-
Confidence 3322211 1112223334445677888899999998887655 567788999999999999999999999988875432
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHccCchhhhHHHHHHH
Q 018876 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR------GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (349)
+...--......+..|.+.+|...+...... +..--..++......+...|-...|..+++.-
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 2222222333456789999999888877643 11222344555555555556655666555543
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.23 E-value=2.8e-05 Score=50.83 Aligned_cols=74 Identities=20% Similarity=0.418 Sum_probs=37.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCchHHHHHHHHHHhccC--------chHHHHHHHHHHhccCCCcchhhHHHHH
Q 018876 70 IKSCLKAFAFDKVQALLSDMSTQGI-RPNTVTYNTLIDAYGRAK--------MFAEMELTLVKMLSEDCEPDVWTMNCTL 140 (349)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (349)
|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4444444666666666666666666 566666666665554431 1223344444444444444444444444
Q ss_pred HHH
Q 018876 141 RAF 143 (349)
Q Consensus 141 ~~~ 143 (349)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.20 E-value=3.3e-05 Score=50.47 Aligned_cols=76 Identities=9% Similarity=0.200 Sum_probs=49.5
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCC-CchHHHHHHHHHHHHccC--------ChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018876 245 VRAYGHAGKPEKLGSVLRFIDNSDI-MLDTVFFNCLVDAYGRLK--------CFAEMKGVLEVMQQRGCKPDKVTYRTMV 315 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 315 (349)
|..|...+++...-.+|+.+++.++ .|+..+|+.++.+.++.. +.-..+.+|++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3444445666666666666666666 566666666666655432 2345677788888888888888888888
Q ss_pred HHHHc
Q 018876 316 RAYST 320 (349)
Q Consensus 316 ~~~~~ 320 (349)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 77654
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.13 E-value=0.00028 Score=56.55 Aligned_cols=129 Identities=11% Similarity=0.075 Sum_probs=52.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 018876 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS-YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAF 213 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (349)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444555555555544322 1122223222222 11233344455555544443 222444444444544
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876 214 GRAGDLKQMEYLFRLMRSERIKPSC---VTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555544432 11111 2444444444444444444444444443
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.11 E-value=0.00013 Score=50.07 Aligned_cols=99 Identities=7% Similarity=-0.027 Sum_probs=49.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CchHHHHHHH
Q 018876 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP-DVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIR--PNTVTYNTLI 105 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 105 (349)
++..+...+.+.|++++|.+.|+.+....+-.+ ....+..+..++.+.|+++.|...++.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555556666666666665554321001 1234444555555566666666666655543111 1123444455
Q ss_pred HHHhccCchHHHHHHHHHHhcc
Q 018876 106 DAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.++.+.|+.++|.+.++++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.11 E-value=8.7e-05 Score=48.45 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 018876 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG 109 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (349)
+..+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 4455556666777777777777666542 2334555666666666677777777776666553 223345556666666
Q ss_pred ccCchHHHHHHHHHHhc
Q 018876 110 RAKMFAEMELTLVKMLS 126 (349)
Q Consensus 110 ~~~~~~~a~~~~~~~~~ 126 (349)
..|+++.|...+....+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666666553
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.08 E-value=1.2e-05 Score=51.44 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHHhcCCC-CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876 5 CKQPEKAHELFQAMVDEGCD-ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 83 (349)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.+++. .+.. +.+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46777777777777765321 1344455567777777777777777766 2221 223344445566777777777777
Q ss_pred HHHHH
Q 018876 84 ALLSD 88 (349)
Q Consensus 84 ~~~~~ 88 (349)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.07 E-value=0.00025 Score=56.78 Aligned_cols=129 Identities=9% Similarity=0.039 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH-HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018876 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA-FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSY 178 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (349)
+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666665432 2223333333333 22244555566666666554 344556666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876 179 GKAGHFEKMSAVMEYMQKYHYSWT---IVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
.+.++.+.|..+|+..... +.++ ...|...+..-.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666544 2211 23666666666666666666666666654
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.07 E-value=6.8e-06 Score=41.06 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=22.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGC 304 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 304 (349)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.06 E-value=0.0004 Score=47.69 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=9.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 018876 174 LLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
+..++.+.|+++.|...++.+.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 3333444444444444444333
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=0.00015 Score=47.29 Aligned_cols=86 Identities=17% Similarity=0.075 Sum_probs=33.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHH
Q 018876 212 AFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (349)
.+...|++++|...++.+.+.. +.+...+..+...+...++++.|...++....... .+..++..+...+...|+++.
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHHH
Confidence 3333444444444444433321 11223333333344444444444444444333221 122333344444444444444
Q ss_pred HHHHHHHH
Q 018876 292 MKGVLEVM 299 (349)
Q Consensus 292 a~~~~~~~ 299 (349)
|...+...
T Consensus 87 a~~~~~~~ 94 (100)
T cd00189 87 ALEAYEKA 94 (100)
T ss_pred HHHHHHHH
Confidence 44444433
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=0.00029 Score=58.53 Aligned_cols=86 Identities=12% Similarity=-0.080 Sum_probs=39.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH
Q 018876 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
..|++++|+.+|+++++.. +.+...|..+..++...|++++|...++.+..... .+...|..+..+|...|++++|..
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4444455555554444432 22334444444444455555555555544444332 133444444444555555555555
Q ss_pred HHHHHHhc
Q 018876 295 VLEVMQQR 302 (349)
Q Consensus 295 ~~~~~~~~ 302 (349)
.|++....
T Consensus 92 ~~~~al~l 99 (356)
T PLN03088 92 ALEKGASL 99 (356)
T ss_pred HHHHHHHh
Confidence 55544443
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.01 E-value=0.00034 Score=49.44 Aligned_cols=98 Identities=9% Similarity=-0.109 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
....-.+..-+...|++++|..+|+.+.... +-+..-|..|..++...|++++|+..|......++ -|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3344445555667788888888888776554 34556667777777778888888888888777664 367777777888
Q ss_pred HHccCChHHHHHHHHHHHhc
Q 018876 283 YGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~ 302 (349)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888776654
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=0.00016 Score=60.04 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=58.1
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 83 (349)
..|++++|++.|++..+.. +.+...|..+..+|...|++++|+..++.+.... +.+...|..+..++...|++++|.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4567777777777777653 3456666666677777777777777777776653 345566666677777777777777
Q ss_pred HHHHHHHhC
Q 018876 84 ALLSDMSTQ 92 (349)
Q Consensus 84 ~~~~~~~~~ 92 (349)
..|++..+.
T Consensus 91 ~~~~~al~l 99 (356)
T PLN03088 91 AALEKGASL 99 (356)
T ss_pred HHHHHHHHh
Confidence 777776665
No 161
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.00 E-value=0.00013 Score=54.08 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=61.7
Q ss_pred CchHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH
Q 018876 201 WTIVTYNIVIDAFGR-----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF 275 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (349)
.+..+|..++..|.+ .|+.+=....++.|.+-|+.-|..+|+.|+..+=+ |.+- |. ..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-NF 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-cH
Confidence 366777777777653 34555566666677777777777777777766543 2211 00 01
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 018876 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
+..+...|- .+.+-|++++++|...|+-||..++..++..+.+.+
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111111111 233557788888888888888888888888876655
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.99 E-value=0.00081 Score=49.70 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555556666666666666666654432221 2455555666666666666666666655432 223344444555
Q ss_pred HHHhcCChhh
Q 018876 247 AYGHAGKPEK 256 (349)
Q Consensus 247 ~~~~~~~~~~ 256 (349)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555555433
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.99 E-value=3.8e-05 Score=49.06 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=8.3
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 018876 174 LLDSYGKAGHFEKMSAVMEY 193 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~ 193 (349)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444433
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.99 E-value=0.00044 Score=48.89 Aligned_cols=98 Identities=7% Similarity=-0.002 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018876 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
......+...+...|++++|..+|+.+....+. +..-|-.|..++-..|++++|++.|....... +-++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 334445555667788888888888888776543 66777777777888888888888888877665 4566777778888
Q ss_pred HHhcCChhhHHHHHHHHhhC
Q 018876 248 YGHAGKPEKLGSVLRFIDNS 267 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~ 267 (349)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888776653
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.97 E-value=0.0047 Score=48.28 Aligned_cols=177 Identities=12% Similarity=0.128 Sum_probs=101.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 018876 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTF---NILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGR 215 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (349)
....+...|++++|.+.|+.+...-.. +.... -.+..++.+.+++++|...+++..+..+.-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455677888888888887765322 22222 34556677788888888888777766543333333333333321
Q ss_pred --c---------------CC---hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH
Q 018876 216 --A---------------GD---LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF 275 (349)
Q Consensus 216 --~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (349)
. .+ ...|...|+.+++ -|-.+.-..+|...+..+... .-..-
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~---la~~e 178 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR---LAKYE 178 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH---HHHHH
Confidence 1 01 1233344444433 222222334444444333321 01111
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018876 276 FNCLVDAYGRLKCFAEMKGVLEVMQQR--GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
-.+.+-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|......+.
T Consensus 179 -~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 -LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 14667788899999999888888876 333345667788889999999999888776553
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.96 E-value=0.0013 Score=52.93 Aligned_cols=127 Identities=17% Similarity=0.226 Sum_probs=66.1
Q ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----Cch
Q 018876 136 MNCTLRAFGNS-GQIDTMEKCYEKFQSA----GIQP--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-----WTI 203 (349)
Q Consensus 136 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 203 (349)
+..+...|... |+++.|.+.|++..+. + .+ -..++..+...+.+.|++++|..+|+++...... .+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 34444555565 7777777777765442 2 11 1334556667777888888888888777554221 112
Q ss_pred H-HHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC--cHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876 204 V-TYNIVIDAFGRAGDLKQMEYLFRLMRSER--IKP--SCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 204 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
. .+-..+-++...|++..|...+++..... ... .......|+.++ ..|+.+.....+...
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 1 22223334555678888888888776442 111 234455566655 445544444444333
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=1.6e-05 Score=39.66 Aligned_cols=26 Identities=12% Similarity=0.397 Sum_probs=10.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876 136 MNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33344444444444444444444333
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.95 E-value=0.0011 Score=49.06 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc--hHHHHHHHHHHhccCchHHHHHHHHHHhc
Q 018876 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPN--TVTYNTLIDAYGRAKMFAEMELTLVKMLS 126 (349)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 126 (349)
+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++...
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444443321111 23344444444444555555554444443
No 169
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.94 E-value=0.0093 Score=50.54 Aligned_cols=156 Identities=6% Similarity=0.035 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW-TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
..+|..+++...+..-.+.|..+|.+..+.+..+ ++...++++..+|. ++..-|..+|+.-... ..-++.-....+.
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 3456777888888888999999999999887766 77788888888765 6788999999876543 2233455567778
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCch--HHHHHHHHHHHHccCChHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHcc
Q 018876 247 AYGHAGKPEKLGSVLRFIDNSDIMLD--TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG---CKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~ 321 (349)
-+...++-..+..+|+++...+..++ ...|..++..-..-|+...+.++-+++...= ..+....-..+++-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 88899999999999999988855443 5789999999999999999999988876541 222223344555555555
Q ss_pred Cchh
Q 018876 322 GMKN 325 (349)
Q Consensus 322 g~~~ 325 (349)
+...
T Consensus 524 d~~~ 527 (656)
T KOG1914|consen 524 DLYP 527 (656)
T ss_pred cccc
Confidence 5443
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.92 E-value=2.5e-05 Score=47.56 Aligned_cols=62 Identities=27% Similarity=0.397 Sum_probs=42.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL 69 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 69 (349)
+.|++++|+++|+.+.+.. |.+..++..+..+|.+.|++++|.++++.+... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 4677788888888777663 446677777777788888888888888777765 4554444333
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0016 Score=50.98 Aligned_cols=117 Identities=14% Similarity=0.046 Sum_probs=90.2
Q ss_pred HhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCc
Q 018876 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNSDIML 271 (349)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~ 271 (349)
...++. |...|-.|...|...|+...|..-|.+..+.. .++...+..+..++..+.+ ..++..+++++...+. -
T Consensus 149 L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~ 225 (287)
T COG4235 149 LQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-A 225 (287)
T ss_pred HHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-c
Confidence 334433 88999999999999999999999999887654 5566777777777665543 5578889999988764 4
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876 272 DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 316 (349)
|+.+...|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 78888888889999999999999999999873 34444555554
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.88 E-value=0.0021 Score=56.09 Aligned_cols=143 Identities=9% Similarity=-0.051 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC--------ChHHHHHHHHHHH
Q 018876 164 IQPSINTFNILLDSYGKAG-----HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG--------DLKQMEYLFRLMR 230 (349)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 230 (349)
.+.+...|..++++..... +...|..+|++..+..+. ....|..+..++.... ++..+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4567788888888755432 377899999999887533 3455555444332221 1223333344333
Q ss_pred hC-CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHH
Q 018876 231 SE-RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 231 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 309 (349)
.. ..+.+...+..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 32 123455667777666667899999999999998876 57788999999999999999999999988876 34444
Q ss_pred HH
Q 018876 310 TY 311 (349)
Q Consensus 310 ~~ 311 (349)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.86 E-value=0.0006 Score=50.18 Aligned_cols=62 Identities=6% Similarity=-0.133 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW--TIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
.+..+...+...|++++|...|+........+ ...++..+...+...|++++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554332111 123444455555555555555555555443
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.86 E-value=0.00038 Score=51.69 Aligned_cols=115 Identities=18% Similarity=0.274 Sum_probs=79.7
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHH
Q 018876 47 FSLLEHMKNTPDCQPDVNTYSILIKSCLKA-----FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTL 121 (349)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 121 (349)
...|+..... ..+-.+|..++..+.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|
T Consensus 34 ~~~f~~~~~~---~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f 108 (228)
T PF06239_consen 34 EELFERAPGQ---AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF 108 (228)
T ss_pred HHHHHHHhhc---cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH
Confidence 3445544322 46777888888877754 5667777788889999999999999999988865 3331 11122
Q ss_pred HHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018876 122 VKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183 (349)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (349)
+.+. .- .-.+.+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 109 Q~~F---------------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEF---------------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHh---------------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2221 11 123456688899999999999999999999998877665
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.001 Score=48.99 Aligned_cols=81 Identities=10% Similarity=-0.085 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 018876 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP--SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
...+..+...+...|++++|...|.+.......+ ...++..+...+...|++++|...++........ ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 3344455555555666666666666655442221 1235555666666666666666666666554321 233344444
Q ss_pred HHHH
Q 018876 211 DAFG 214 (349)
Q Consensus 211 ~~~~ 214 (349)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00042 Score=53.86 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=73.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018876 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
+-+.+.+++++|+..|.+..+..+. |.+.|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3456778888888888888887644 77777888888888888888888777776654 334577888888888888888
Q ss_pred hHHHHHHHHhhCCCCchHHHHH
Q 018876 256 KLGSVLRFIDNSDIMLDTVFFN 277 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~ 277 (349)
+|.+.|++..+.. |+-.+|-
T Consensus 167 ~A~~aykKaLeld--P~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALELD--PDNESYK 186 (304)
T ss_pred HHHHHHHhhhccC--CCcHHHH
Confidence 8888888887754 4444443
No 177
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.01 Score=48.60 Aligned_cols=87 Identities=10% Similarity=-0.100 Sum_probs=38.4
Q ss_pred hcCChHHHHHHHHHHHhC---CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHH
Q 018876 215 RAGDLKQMEYLFRLMRSE---RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (349)
+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+..+|+.-.+...+.+.. -...|..-..++...++|++
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555432 22333444444444555555555555555554443210 01112222223333445555
Q ss_pred HHHHHHHHHhc
Q 018876 292 MKGVLEVMQQR 302 (349)
Q Consensus 292 a~~~~~~~~~~ 302 (349)
|.+-++...+.
T Consensus 340 AV~d~~~a~q~ 350 (486)
T KOG0550|consen 340 AVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHhh
Confidence 55555544433
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.0079 Score=48.45 Aligned_cols=150 Identities=13% Similarity=0.219 Sum_probs=81.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CC-CCchHHHHHHH
Q 018876 137 NCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA-GHFEKMSAVMEYMQKY----HY-SWTIVTYNIVI 210 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~ 210 (349)
...+..|...|++..|-+.+..+ ...|... |+++.|...|++..+. +. ..-...+..+.
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 33445556666666655554443 3344444 6777777777665432 20 11234566677
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCC-----CcH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCC--C--CchHHHHHHHH
Q 018876 211 DAFGRAGDLKQMEYLFRLMRSERIK-----PSC-VTLCSLVRAYGHAGKPEKLGSVLRFIDNSD--I--MLDTVFFNCLV 280 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li 280 (349)
..+.+.|++++|.++|++....... .+. ..+...+-++...||+..|...++...... + .........|+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 7788888888888888887654221 122 123334446667788888888888876542 2 12244556666
Q ss_pred HHHHc--cCChHHHHHHHHHHHh
Q 018876 281 DAYGR--LKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 281 ~~~~~--~g~~~~a~~~~~~~~~ 301 (349)
.++-. ...+..+..-|+.+.+
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHhCCHHHHHHHHHHHcccCc
Confidence 66654 2345555555555443
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.79 E-value=0.01 Score=46.41 Aligned_cols=180 Identities=10% Similarity=0.058 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHH---HHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018876 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY---NTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
+-.....+...|++++|.+.|+.+...-.. +.... -.+..++.+.+++++|...+++..+........-+...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 333455556778888888888888776322 22222 34567778888888888888888766322222233333333
Q ss_pred HHc--c---------------CC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 018876 143 FGN--S---------------GQ---IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT 202 (349)
Q Consensus 143 ~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 202 (349)
.+. . .+ ...|.+.|+.+++. -|+ +.-..+|...+..+...-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~l---- 174 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDRL---- 174 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHHH----
Confidence 221 1 11 12344555555543 222 222344444333332210
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018876 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE--RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
...--.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|......+.
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111114556677788888888877777754 333445666677788888888888877766554
No 180
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.79 E-value=0.00017 Score=43.98 Aligned_cols=65 Identities=18% Similarity=0.088 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-chhhhHHHHHHHHHhH
Q 018876 273 TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG-MKNHAKEFQDLVEKMD 338 (349)
Q Consensus 273 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 338 (349)
...|..+...+...|++++|+..|++..+.+.. +...|..+..+|...| ++++|.+.++...+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 445666666666666666666666666665322 4555666666666666 5666666666655543
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.003 Score=55.11 Aligned_cols=139 Identities=10% Similarity=-0.007 Sum_probs=98.5
Q ss_pred CCCCchHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcC--------ChhhHHHHHHH
Q 018876 198 HYSWTIVTYNIVIDAFGRA-----GDLKQMEYLFRLMRSERIKPS-CVTLCSLVRAYGHAG--------KPEKLGSVLRF 263 (349)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~a~~~~~~ 263 (349)
..+.+...|...+++.... ++...|..+|++..+.. |+ ...+..+..++.... +...+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3456788999998875432 23678999999998764 44 344444433332221 12333444444
Q ss_pred HhhC-CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876 264 IDNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 264 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
.... ....++..|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.++...++++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3332 123456788888777778899999999999999885 68889999999999999999999999998887764
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.0011 Score=51.55 Aligned_cols=151 Identities=11% Similarity=0.076 Sum_probs=106.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 018876 141 RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLK 220 (349)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (349)
.-+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+.....+.. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 34678899999999999999974 448888899999999999999999999888887643 6789999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHH-HhcCChh---hHHHHHHHHhhCCCCchHHHHHHHHHHH-HccCChHHHHHH
Q 018876 221 QMEYLFRLMRSERIKPSCVTLCSLVRAY-GHAGKPE---KLGSVLRFIDNSDIMLDTVFFNCLVDAY-GRLKCFAEMKGV 295 (349)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~ 295 (349)
+|.+.|++.++. .|+..+|-.=+... .+.+... .+..-++.....|..|+... .+ ............
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s------~~~~~l~nnp~l~~~ 238 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRS------MFNGDLMNNPQLMQL 238 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchh------hhccccccCHHHHHH
Confidence 999999998764 67766665544332 2333333 33334444444444344332 22 233334455566
Q ss_pred HHHHHh
Q 018876 296 LEVMQQ 301 (349)
Q Consensus 296 ~~~~~~ 301 (349)
...|..
T Consensus 239 ~~~m~~ 244 (304)
T KOG0553|consen 239 ASQMMK 244 (304)
T ss_pred HHHHhh
Confidence 666666
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.027 Score=49.49 Aligned_cols=265 Identities=12% Similarity=0.106 Sum_probs=124.9
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc
Q 018876 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM 113 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (349)
+....+.|++-+..++++.-........-..+|+.+...+.....+++|.+.+..-... ...+.++.+...
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence 34444555555555554332111110112345666666666666666666655432211 234455555555
Q ss_pred hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018876 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEY 193 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (349)
+++.+.+.+.+ +-+....-.+..++.+.|.-++|.+.+-+. +. | ...+..|...+++.+|.++-+.
T Consensus 838 f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 838 FGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 55555444443 334445556667777777777776655332 21 1 1234556666777777666544
Q ss_pred HHhcCCCCchHHH--------------HHHHHHHHhcCChHHHHHHHHHHHh----CCCCCcHHHHHHHHHHH-------
Q 018876 194 MQKYHYSWTIVTY--------------NIVIDAFGRAGDLKQMEYLFRLMRS----ERIKPSCVTLCSLVRAY------- 248 (349)
Q Consensus 194 ~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~------- 248 (349)
..- |.+.+. .--|..+.+.|+.-.|-+++.+|.+ ++.++-..--.-++.++
T Consensus 904 ~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~ 979 (1189)
T KOG2041|consen 904 FQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQ 979 (1189)
T ss_pred ccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 321 111111 1123334455655566666666643 23332211111111111
Q ss_pred --------HhcCChhhHHHHHHHHhhC-------CCC--chHHHHHHHHHHHHccCChHHHHHHHHHHHhc-CCCCCHHH
Q 018876 249 --------GHAGKPEKLGSVLRFIDNS-------DIM--LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-GCKPDKVT 310 (349)
Q Consensus 249 --------~~~~~~~~a~~~~~~~~~~-------~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~ 310 (349)
-..|..++|..+++...-. +.- .....|-.|..-....|..+.|++.--.+.+. .+-|....
T Consensus 980 ~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~ei 1059 (1189)
T KOG2041|consen 980 TIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEI 1059 (1189)
T ss_pred HHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHH
Confidence 1235555555544332110 000 12233344444456678888888765544443 34566666
Q ss_pred HHHHHHHHHccCchh
Q 018876 311 YRTMVRAYSTNGMKN 325 (349)
Q Consensus 311 ~~~l~~~~~~~g~~~ 325 (349)
|..+.-+-+....+.
T Consensus 1060 ySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1060 YSLLALAACAVRAFG 1074 (1189)
T ss_pred HHHHHHHHhhhhhhh
Confidence 766655444443333
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=0.00015 Score=44.10 Aligned_cols=52 Identities=25% Similarity=0.380 Sum_probs=31.7
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
+.|++++|+++|+.+.... +-+...+..+..++.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666665542 335555666666666666666666666666655
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.014 Score=44.88 Aligned_cols=140 Identities=13% Similarity=-0.052 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHH-----H
Q 018876 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS-----L 244 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 244 (349)
..+.++..+...|.+.-...++.+..+...+.++.....+.+.-.+.|+.+.|...|++..+..-..+..+++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566777777888989999999998887777889999999999999999999999997765432333333333 3
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHH
Q 018876 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR 312 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 312 (349)
...+.-++++..|...+.++...+.. ++...|.-.-+..-.|+...|.+.++.|... .|.+.+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 34456677888888889888876643 6666666666666778999999999999987 34444444
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.67 E-value=0.0071 Score=41.19 Aligned_cols=89 Identities=16% Similarity=0.008 Sum_probs=40.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--chHHHHHHHHHHHHccC
Q 018876 212 AFGRAGDLKQMEYLFRLMRSERIKPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g 287 (349)
++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..+++......+. .+......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 34445555555555555555443332 223344445555555555555555555433111 01111222233445555
Q ss_pred ChHHHHHHHHHHH
Q 018876 288 CFAEMKGVLEVMQ 300 (349)
Q Consensus 288 ~~~~a~~~~~~~~ 300 (349)
+.++|+..+-...
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555544433
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.66 E-value=0.00043 Score=41.58 Aligned_cols=56 Identities=13% Similarity=-0.013 Sum_probs=28.3
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 246 RAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
..+...|++++|...|+.+.+..+. +...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555554422 4445555555555555555555555555443
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.65 E-value=0.0035 Score=42.65 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018876 5 CKQPEKAHELFQAMVDEGCDAN--TQSFTALLSAYGRSGLFDKAFSLLEHMKN 55 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 55 (349)
.|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555544443322 22333444444455555555555554443
No 189
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.02 Score=46.94 Aligned_cols=259 Identities=9% Similarity=-0.047 Sum_probs=152.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018876 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
..+.+..++..|+..+...++.... +..-|..-+..+...++++++.--.++-.+.. +-........-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 3455666777777777777776432 44455555555556666666665555444321 001111122222222223333
Q ss_pred HHHHHHH---------------HHHhcCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH-
Q 018876 151 TMEKCYE---------------KFQSAGI-QPSINTFNIL-LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDA- 212 (349)
Q Consensus 151 ~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 212 (349)
+|.+.++ .+..... +|.-.++..+ ..++.-.|+.++|...--.+.+.. ....+...+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 3322222 1111111 2333333332 245567788888888877776654 22333334433
Q ss_pred -HHhcCChHHHHHHHHHHHhCCCCCcHHHHHH-------------HHHHHHhcCChhhHHHHHHHHhhC---CCCchHHH
Q 018876 213 -FGRAGDLKQMEYLFRLMRSERIKPSCVTLCS-------------LVRAYGHAGKPEKLGSVLRFIDNS---DIMLDTVF 275 (349)
Q Consensus 213 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 275 (349)
+...++.+.+...|++.+..+ |+...-.. =..-..+.|++..|.+.+.+.+.. +..|+...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 335677888888888876543 44322211 122345789999999999988764 44567778
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHH---HHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876 276 FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRT---MVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
|.....+..+.|+..+|+.--++.... |...... -..++...++|++|.+-++...+.+.+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 888888899999999999988888765 4433333 334567778999999988887776655
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.60 E-value=0.00037 Score=41.90 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=52.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHh
Q 018876 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDET 340 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 340 (349)
+...+...|++++|...|+++.+.... +...+..+..++...|++++|...++.+.+..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567789999999999999999998532 7888999999999999999999999998876653
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.011 Score=45.45 Aligned_cols=133 Identities=6% Similarity=-0.110 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHH-----
Q 018876 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT----- 139 (349)
Q Consensus 65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 139 (349)
..+.++.++...+.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..-+.+..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344555666666666666666666666554555666666666666667777777766665544333333333332
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018876 140 LRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
...|.-.+++-.|...+.++.... +.|....|.-.-+..-.|+..+|.+.++.|.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 233455566666666666665543 2244444443334444567777777777776654
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.016 Score=42.10 Aligned_cols=126 Identities=12% Similarity=0.100 Sum_probs=70.2
Q ss_pred CCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC---CCCCHHHH
Q 018876 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG---IQPSINTF 171 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 171 (349)
.|+...-..|..++.+.|+..+|...|++....-.--|....-.+.++....+++..|...++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555556666666666666666666666654444455555566666666666666666666665542 1222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 018876 172 NILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
-.+.+.+...|....|..-|+.....- |+...-......+.+.|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 344556666666666666666666543 233322223334455555544443
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.01 Score=46.59 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc---CchHHHHHHHHHHhccCCCcchhhH
Q 018876 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA---KMFAEMELTLVKMLSEDCEPDVWTM 136 (349)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 136 (349)
+-|...|-.|...|...|+.+.|...|....+.. +++...+..+..++... .+..++..+++++.... +-++...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3455555555555555555555555555555442 22444444444333222 12345555555555443 3344444
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876 137 NCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44555555555555555555555554
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.50 E-value=0.038 Score=45.06 Aligned_cols=106 Identities=16% Similarity=0.099 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018876 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
+.+..+.-+...|+...|..+-.+.. .|+...|...+.+++..+++++..++... . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 33444455555666666666655442 45666666666666666666655554321 1 12345566666666
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHH
Q 018876 285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
+.|+..+|..+...+ + +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 666666666655441 1 12334455555665555443
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.49 E-value=0.002 Score=52.56 Aligned_cols=263 Identities=13% Similarity=0.006 Sum_probs=149.7
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCch----hhHHHHHHHHHcCCChhHHHHHHHHhh----cCCCCCCCHHHHHHHHHHH
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANT----QSFTALLSAYGRSGLFDKAFSLLEHMK----NTPDCQPDVNTYSILIKSC 73 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~ 73 (349)
+|+.|+....+.+|+...+.| ..|. ..|..|..+|.-.+++++|++....=. ..+.-.-...+...|...+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 578899999999999999887 3333 346666777777788888887643210 0000011122223344445
Q ss_pred HhcCChhHHHHHHHH----HHhCCCC-CchHHHHHHHHHHhccCc--------------------hHHHHHHHHHHhc--
Q 018876 74 LKAFAFDKVQALLSD----MSTQGIR-PNTVTYNTLIDAYGRAKM--------------------FAEMELTLVKMLS-- 126 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~-- 126 (349)
--.|.+++|.-.-.+ ..+.|-. .....+..+...|...|+ ++.|.++|.+-.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666543222 1222211 123344556666655442 3344444433221
Q ss_pred --cCC-CcchhhHHHHHHHHHccCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 018876 127 --EDC-EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ----SAGIQ-PSINTFNILLDSYGKAGHFEKMSAVMEYMQK-- 196 (349)
Q Consensus 127 --~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 196 (349)
.|- -.-...|..+...|.-.|+++.|+...+.-. +-|-. .....+..+.+++.-.|+++.|.+.++....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 110 1112345556666677788888877654422 22211 2344677788888888999999888876532
Q ss_pred --cCC-CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018876 197 --YHY-SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-----RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 197 --~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.|- .....+.-.|...|.-..++++|+.++.+-... ...-....+.++..++...|..++|+.+.+...
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 221 123445556677777777788888877653221 112344677788888888888888887766543
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.46 E-value=0.029 Score=42.73 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=10.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 018876 210 IDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
...|.+.|.+..|..-++.+++
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3444555555555555555444
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.45 E-value=0.00086 Score=40.81 Aligned_cols=60 Identities=18% Similarity=0.058 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC-ChHHHHHHHHHHH
Q 018876 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK-CFAEMKGVLEVMQ 300 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~ 300 (349)
+|..+...+...|++++|+..|++..+..+ -+...|..+..+|...| ++++|.+.++...
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 333444444444444444444444444332 13334444444444444 3444444444433
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.45 E-value=0.03 Score=42.65 Aligned_cols=178 Identities=15% Similarity=0.128 Sum_probs=86.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC
Q 018876 140 LRAFGNSGQIDTMEKCYEKFQSAGI--QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAG 217 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 217 (349)
...+...|++.+|.+.|+.+...-. +-.....-.++.++.+.|+++.|...++...+..+.-....+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3444566777777777777665421 11233344556667777777777777777665543222222222222222111
Q ss_pred ChHHHHHHHHHHHhCCCC---CcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH
Q 018876 218 DLKQMEYLFRLMRSERIK---PSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
...... ....... --...+..++.-|-.+.-..+|...+..+.+. .-..- -.+...|.+.|.+..|..
T Consensus 92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT-HHHHHH
T ss_pred hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcccHHHHHH
Confidence 111110 0000000 00123344444444455555565555544432 11111 235677888888888888
Q ss_pred HHHHHHhcCCCCC----HHHHHHHHHHHHccCchhhhH
Q 018876 295 VLEVMQQRGCKPD----KVTYRTMVRAYSTNGMKNHAK 328 (349)
Q Consensus 295 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~ 328 (349)
-++.+++. -|+ ......++.+|.+.|..+.+.
T Consensus 163 r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88888876 233 345567777888888777443
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.39 E-value=0.0062 Score=49.82 Aligned_cols=134 Identities=13% Similarity=0.023 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH----hCCCC-CcHHHHHHHHHHHHhcCChhhHHHHHHHHh----hCCC-CchHH
Q 018876 205 TYNIVIDAFGRAGDLKQMEYLFRLMR----SERIK-PSCVTLCSLVRAYGHAGKPEKLGSVLRFID----NSDI-MLDTV 274 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~ 274 (349)
.|..|...|.-.|+++.|+...+.-. +-|-+ .....+..+..++.-.|+++.|.+.++... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444444445566666665443221 11211 122445566666666677777766665432 2111 12233
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR-----GCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
+..+|...|.-..+++.|+.++.+-... +..-....+.+|..+|...|..++|..+.+...+..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4445666666666666666665443211 112245566677777777777777777666555543
No 200
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.35 E-value=0.01 Score=40.81 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
..++..++.++++.|+.+....+++..- |+.++... ..+. .-......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4556666666777777666666665442 22222110 0000 22334566899999999999
Q ss_pred HHccCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHH
Q 018876 283 YGRLKCFAEMKGVLEVMQQR-GCKPDKVTYRTMVRAYS 319 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 319 (349)
|+..|++..|+++++...+. +++.+..+|..|+.-+.
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999988766 77777899999988543
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.35 E-value=0.0019 Score=46.25 Aligned_cols=71 Identities=25% Similarity=0.158 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh-----cCCCCCHHHH
Q 018876 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ-----RGCKPDKVTY 311 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~ 311 (349)
....++..+...|+++.|....+.+....+ .+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 455566667778888888888888877654 4777888888888888888888888877643 3777776653
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.30 E-value=0.00077 Score=41.59 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=25.8
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcC
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNT 56 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 56 (349)
.+.+++++|.++++.+.+.+ |.++..|.....++...|++++|.+.|+...+.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34455555555555555442 334444444445555555555555555555443
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.29 E-value=0.0034 Score=44.95 Aligned_cols=71 Identities=18% Similarity=0.127 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhc-----cCCCcchhh
Q 018876 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS-----EDCEPDVWT 135 (349)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 135 (349)
.+...++..+...|+++.|..+...+.... +.+...|..+|.+|...|+...|.+.|+++.. .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345556666777777777777777777763 44667777777777777777777777776643 266676654
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.0092 Score=47.14 Aligned_cols=97 Identities=11% Similarity=-0.023 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CchHHHHH
Q 018876 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI--MLDTVFFN 277 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 277 (349)
..|...+..+.+.|++++|...|+.+.... |+ ...+..+...+...|++++|...|+.+.+..+ ......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 334444444455667777777777766542 22 23555566667777777777777776664321 11233444
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhc
Q 018876 278 CLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.+...+...|+.++|..+|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666677777777777766665
No 205
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.25 E-value=0.0016 Score=40.73 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhc----CC-CCC-HHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GC-KPD-KVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|.++++...++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45666777777777777777777766543 11 122 4456666777777777777777777666554
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.25 E-value=0.018 Score=45.54 Aligned_cols=100 Identities=9% Similarity=0.009 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCcHHHHHHH
Q 018876 169 NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSER--IKPSCVTLCSL 244 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l 244 (349)
..|...+..+.+.|++++|...|+.+.+..+... ...+-.+...|...|++++|...|+.+...- .+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444444566778888888877776543211 3456667777777888888888887776531 12224445555
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCC
Q 018876 245 VRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
...+...|+.+.|...++.+.+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 666777788888888887777654
No 207
>PRK15331 chaperone protein SicA; Provisional
Probab=97.22 E-value=0.021 Score=40.83 Aligned_cols=90 Identities=13% Similarity=-0.009 Sum_probs=66.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018876 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
.-+...|++++|..+|+-+.-.+ +-+..-+..|..++...+++++|...|......+. -|+..+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33457888999999888876654 34455667777778888888999888877655443 24555556778888889999
Q ss_pred HHHHHHHHHHhc
Q 018876 291 EMKGVLEVMQQR 302 (349)
Q Consensus 291 ~a~~~~~~~~~~ 302 (349)
.|...|+.....
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 998888888773
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.20 E-value=0.096 Score=43.37 Aligned_cols=31 Identities=13% Similarity=-0.045 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+.-.+..++.+..-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445556666666667777777777776654
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.20 E-value=0.011 Score=40.68 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHHcCCChhHHHHHHHHhhcC--------------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018876 26 NTQSFTALLSAYGRSGLFDKAFSLLEHMKNT--------------PDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 91 (349)
|..++..++.++++.|+++....+.+..-.. .+..|+.....+++.+++..+++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3456778888888888888887777654221 12344455555555555555555555555555443
Q ss_pred C-CCCCchHHHHHHHH
Q 018876 92 Q-GIRPNTVTYNTLID 106 (349)
Q Consensus 92 ~-~~~~~~~~~~~l~~ 106 (349)
. +++.+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 3 34444444544443
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.15 E-value=0.054 Score=39.46 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=89.8
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHH
Q 018876 130 EPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYS-WTIVTYNI 208 (349)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 208 (349)
-|+...-..+..+....|+..+|...|++...--..-|....-.+.++....+++..|...++++-+.+.. -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 56666666677788888888888888888776555567777777778888888888888888877665421 12334445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018876 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 261 (349)
+.+.+...|.+.+|+.-|+..... .|+...-......+.+.|+.+++..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 667777888888888888877664 455555555556667777666554433
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.11 Score=42.45 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 018876 170 TFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYG 249 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (349)
+.+..+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++...+... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555667778899888888866653 36899999999999999999988876432 223477889999999
Q ss_pred hcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876 250 HAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 319 (349)
..|+..+|..++..+. + ..-+..|.+.|++.+|.+.--+.. |...+..+...+-
T Consensus 249 ~~~~~~eA~~yI~k~~------~----~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~ 302 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP------D----EERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCP 302 (319)
T ss_pred HCCCHHHHHHHHHhCC------h----HHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCC
Confidence 9999999998887722 1 456778899999999987644332 5555555544443
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.08 E-value=0.0051 Score=37.82 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=34.5
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
..|.+.+++++|.+.++.+.... +.+...+.....++.+.|++++|...++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34556666666666666666553 345555555666666666666666666666654
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.04 E-value=0.13 Score=45.00 Aligned_cols=253 Identities=15% Similarity=0.113 Sum_probs=136.4
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHH---------HHhhcCCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCC
Q 018876 27 TQSFTALLSAYGRSGLFDKAFSLL---------EHMKNTPDCQPDVNTYSILIKSCLKAFAFD--KVQALLSDMSTQGIR 95 (349)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~ 95 (349)
...+.+-+..|...|.+++|.++- +.+... ..+...++..=.+|.+.++.. +...-++++.+.|-.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 334444555677777777776541 111111 122333444555666655433 444556677777877
Q ss_pred CchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHH-----HHHHHHccCCHHHHHHHHHHHHh--cCCCCCH
Q 018876 96 PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNC-----TLRAFGNSGQIDTMEKCYEKFQS--AGIQPSI 168 (349)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 168 (349)
|+... +...++-.|.+.+|.++|.+--.++- -...|+- ..+-+...|..++-..+..+-.+ ..++-.
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP- 706 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP- 706 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-
Confidence 77643 44566778888888888876532210 0111111 11223333333332222221111 011111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH----------HHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH
Q 018876 169 NTFNILLDSYGKAGHFEKMSAVMEY----------MQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC 238 (349)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (349)
.+....+...|+.++|..+.-+ ..+.. ..+..+...+...+-+...+.-|-++|..|-.
T Consensus 707 ---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld-~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------- 775 (1081)
T KOG1538|consen 707 ---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD-KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------- 775 (1081)
T ss_pred ---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc-hhhhhHHHHHHHHHhhccccchHHHHHHHhcc-------
Confidence 1223344556666666654321 11111 12455555666666677777888888887743
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchH-----------HHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDT-----------VFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 303 (349)
...+++.....+++.+|..+-+...+. .|++ .-|...-++|.+.|+-.+|..+++++....
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 234667777888999988888776653 2222 123445567888999999999999887653
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.00 E-value=0.16 Score=42.47 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSER-IKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
..|...+....+....+.|..+|-++.+.+ +.++..++++++..++ .|++..|..+|+.-...- +-++..-+..+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 345666666667777888888998888777 5677788888888654 577888888887755432 1233333556666
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCchhhhHHHHHHHHH
Q 018876 283 YGRLKCFAEMKGVLEVMQQRGCKPD--KVTYRTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
+...++-..|..+|+..... +..+ ...|..+|.--..-|+...+..+-+++..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77788888888888855443 1112 46788888877777887766666555544
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.98 E-value=0.073 Score=38.14 Aligned_cols=91 Identities=7% Similarity=0.044 Sum_probs=72.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018876 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
..-+...|++++|..+|.-+.-.++. +..-|..|..++-..+++++|...|......+ .-|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 34456789999999999988876644 67777888888888999999999998776544 23444556678889999999
Q ss_pred hhHHHHHHHHhhC
Q 018876 255 EKLGSVLRFIDNS 267 (349)
Q Consensus 255 ~~a~~~~~~~~~~ 267 (349)
+.|...|....+.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988873
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.90 E-value=0.0032 Score=39.36 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcC----CCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018876 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNT----PDCQPD-VNTYSILIKSCLKAFAFDKVQALLSDMS 90 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 90 (349)
.+++.+...|...|++++|++.|++..+. +...|+ ..++..+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666666666666666666655421 100111 3345555555666666666666555543
No 217
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.90 E-value=0.068 Score=36.51 Aligned_cols=68 Identities=7% Similarity=0.061 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 018876 97 NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQ 165 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (349)
+....+..+..+...|.-+...+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44556667777778888888888888776533 566667777788888888888888888888877753
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.89 E-value=0.17 Score=44.10 Aligned_cols=176 Identities=18% Similarity=0.126 Sum_probs=104.5
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCc-----hHHHHHHHHHHhc----cCchHH
Q 018876 47 FSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG-IRPN-----TVTYNTLIDAYGR----AKMFAE 116 (349)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~~~ 116 (349)
.-+|.-+... +||. +..++....=.||-+.+++.+.+..+.+ +.-. .-.|+..+..++. ....+.
T Consensus 177 ~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 177 FGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 4445555443 1343 3345566666677777777777665532 2211 1233444433333 346778
Q ss_pred HHHHHHHHhccCCCcchhhHHHH-HHHHHccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018876 117 MELTLVKMLSEDCEPDVWTMNCT-LRAFGNSGQIDTMEKCYEKFQSAG---IQPSINTFNILLDSYGKAGHFEKMSAVME 192 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 192 (349)
|.++++.+.+. -|+...|... .+.+...|++++|.+.|+...... .+.....+--+.-.+.-..++++|...|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 88888888765 5665555433 345667788888888888655321 11233444556666777888888888888
Q ss_pred HHHhcCCCCchHHHHHHHHH-HHhcCCh-------HHHHHHHHHHH
Q 018876 193 YMQKYHYSWTIVTYNIVIDA-FGRAGDL-------KQMEYLFRLMR 230 (349)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~~ 230 (349)
.+.+.+ ..+...|.-+..+ +...++. ++|.+++.+..
T Consensus 330 ~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 330 RLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 887764 3355555555443 3456666 78888887764
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.02 Score=44.43 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCchHHHHHH
Q 018876 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPD-CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGI--RPNTVTYNTL 104 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 104 (349)
..|+.-+.. .+.|++..|...|....+..+ -.-....+--|..++...|+++.|..+|..+.+.-. +--+..+-.|
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 356665554 466778888888887776521 011233455577888888888888888888777521 1123566677
Q ss_pred HHHHhccCchHHHHHHHHHHhcc
Q 018876 105 IDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
..+..+.|+.++|..+|+++.++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77778888888888888888776
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.68 E-value=0.29 Score=40.65 Aligned_cols=165 Identities=13% Similarity=0.037 Sum_probs=92.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 018876 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAG---IQPSINTFNILLDSYGK---AGHFEKMSAVMEYMQKYHYSWTIVTYNIV 209 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 209 (349)
...++-+|....+++...++.+.+.... +..+...-....-++.+ .|+.++|.+++..+......+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345555777777777777777776541 11122222333445555 67777777777775555555677777766
Q ss_pred HHHHHh---------cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh-h---hHHHHH----HHHhhCC---C
Q 018876 210 IDAFGR---------AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP-E---KLGSVL----RFIDNSD---I 269 (349)
Q Consensus 210 ~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~---~a~~~~----~~~~~~~---~ 269 (349)
...|-. ....++|...|.+.-+. .|+..+--.++-.+...|.. + +..++- ..+.+.| .
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 665531 11356677777765543 24433322222223333321 1 222222 1111222 2
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
..+--.+..++.+..-.|+.++|.+..+.|...
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 234555677888888899999999999999876
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.60 E-value=0.1 Score=43.99 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=51.0
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDV----NTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
.+...|+.+..+|...|++++|+..|++..+. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667888888888888888888888887766 3443 35788888888888888888888888775
No 222
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.51 Score=42.29 Aligned_cols=110 Identities=16% Similarity=0.087 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHH
Q 018876 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVD 281 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (349)
.-.+.+--+.-+...|+..+|.++-.+.+ .||...|..-+.+++..+++++.+++-+..+. +.-|.....
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 33445555566667788888888777664 57777777778888888888876665544332 344566778
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHH
Q 018876 282 AYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEF 330 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 330 (349)
+|.+.|+.++|.+++-+.... . -...+|.+.|++.+|.+.
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence 888888888888876544321 1 345677777777777654
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.59 E-value=0.41 Score=41.71 Aligned_cols=166 Identities=18% Similarity=0.099 Sum_probs=110.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCc-----hHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCcHHHH
Q 018876 172 NILLDSYGKAGHFEKMSAVMEYMQKYH-YSWT-----IVTYNIVIDAFGR----AGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
..++....=.||-+.+++.+....+.+ +.-. .-.|+..+..++. ..+.+.|.+++..+.+. .|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 445556666789999999888765532 2211 2334445544443 34678899999998765 5665555
Q ss_pred HHH-HHHHHhcCChhhHHHHHHHHhhCC---CCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018876 242 CSL-VRAYGHAGKPEKLGSVLRFIDNSD---IMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRA 317 (349)
Q Consensus 242 ~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 317 (349)
... .+.+...|++++|.+.++...... .+.....+--+...++-.++|++|...|..+.+.. ..+..+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 356677899999999999765421 12234455667778888999999999999999864 2345555555443
Q ss_pred -HHccCch-------hhhHHHHHHHHHhHHh
Q 018876 318 -YSTNGMK-------NHAKEFQDLVEKMDET 340 (349)
Q Consensus 318 -~~~~g~~-------~~a~~~~~~~~~~~~~ 340 (349)
+...|+. ++|.+++..+..+...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 4667777 7888888877776553
No 224
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.54 E-value=0.038 Score=43.04 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHH
Q 018876 202 TIVTYNIVIDAFGR-----AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFF 276 (349)
Q Consensus 202 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (349)
|..+|-..+..+.. .++.+=....++.|.+-|+.-|..+|..|+..+-+.. +.| ..++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP-~nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIP-QNVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------ccc-HHHH
Confidence 55566666665543 2445555566667777777777777777766543321 111 1122
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCc
Q 018876 277 NCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
......|-++. +-+.+++++|...|+.||..+-..|+.++.+.+.
T Consensus 129 Q~~F~HYP~QQ--~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQ--NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhh--hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 22222222222 3367777777777777777777777777766654
No 225
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.50 E-value=0.25 Score=39.95 Aligned_cols=130 Identities=8% Similarity=0.153 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHhcCCCCchhhHHHHHHHHHc--CC----ChhHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHhcCCh
Q 018876 8 PEKAHELFQAMVDEGCDANTQSFTALLSAYGR--SG----LFDKAFSLLEHMKNTPDC--QPDVNTYSILIKSCLKAFAF 79 (349)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 79 (349)
+++...+++.|.+.|+..+..+|-+....... .. ...+|.++|+.|++..+. .++..++..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566677778888877776555443332222 22 245678888888776432 2334445555433 33333
Q ss_pred ----hHHHHHHHHHHhCCCCCchH--HHHHHHHHHhccCc--hHHHHHHHHHHhccCCCcchhhHHHH
Q 018876 80 ----DKVQALLSDMSTQGIRPNTV--TYNTLIDAYGRAKM--FAEMELTLVKMLSEDCEPDVWTMNCT 139 (349)
Q Consensus 80 ----~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (349)
+.++.+|+.+.+.|+..+.. ....++..+-.... ...+..+++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 45666677777766654332 22222222211111 34566667777777766666555443
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.098 Score=43.07 Aligned_cols=125 Identities=10% Similarity=0.030 Sum_probs=79.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCC---------CchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH
Q 018876 176 DSYGKAGHFEKMSAVMEYMQKY-----HYS---------WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL 241 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (349)
+.+.+.|++..|...|+..... +.+ .-..++..+..++.+.+++..|+..-...+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4567777777777777665432 111 123456666777777888888888777777665 5666666
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHH-HHHHHHHHHhc
Q 018876 242 CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE-MKGVLEVMQQR 302 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 302 (349)
..=.+++...|+++.|+..|+.+.+..+. |-.+-+.++..-.+..+..+ ..++|..|...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66777788888888888888888776532 44444555555444444333 35666666543
No 227
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.45 E-value=0.26 Score=43.32 Aligned_cols=256 Identities=11% Similarity=0.113 Sum_probs=139.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHH---------HHHHHhCCCCCchHHHHHHHHHHhccCc--hHHHHHHHHHHhccC
Q 018876 60 QPDVNTYSILIKSCLKAFAFDKVQAL---------LSDMSTQGIRPNTVTYNTLIDAYGRAKM--FAEMELTLVKMLSED 128 (349)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 128 (349)
.|....+.+-+..+...|.+++|.++ |+.+... ..+.-.++..=.+|.+..+ +-+...-++++.++|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 34445555556677788888877643 2222222 1233445555566666554 334455566777778
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 018876 129 CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNI-----LLDSYGKAGHFEKMSAVMEYMQKYHYSWTI 203 (349)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 203 (349)
-.|+... +...++-.|.+.+|-++|.+--..+- -...|+- +..-+...|..++-..+.++-.+.. -+.
T Consensus 631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA--r~~ 703 (1081)
T KOG1538|consen 631 ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA--RNI 703 (1081)
T ss_pred CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh--hhc
Confidence 7787643 44566778888888888865322110 1111111 2233445555555444443322110 011
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH------HHhCCC---CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHH
Q 018876 204 VTYNIVIDAFGRAGDLKQMEYLFRL------MRSERI---KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTV 274 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 274 (349)
.-=.+....+...|+.++|..+.-+ +.+.+. ..+..+...+...+.+...+..|.++|..+-+.
T Consensus 704 kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 704 KEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred CCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 1112334455667777777665421 111111 223344555555555666677788888777542
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHHHccCchhhhHHHHHHHH
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV-----------TYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
..++......++|.+|..+-+...+. .||.. -|...-.+|.+.|+..+|.++++.+.
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 24667788899999999888766543 33321 23333457778888777777766553
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.45 E-value=0.054 Score=45.57 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHH
Q 018876 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSC----VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFN 277 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (349)
+...++.+..+|...|++++|...|++.++.. |+. .+|..+..+|...|+.++|...++.+.+.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 57788889999999999999999999887754 443 358889999999999999999999988752 11 222
Q ss_pred HHHH--HHHccCChHHHHHHHHHHHhcCC
Q 018876 278 CLVD--AYGRLKCFAEMKGVLEVMQQRGC 304 (349)
Q Consensus 278 ~li~--~~~~~g~~~~a~~~~~~~~~~~~ 304 (349)
.+.. .+....+..+..++++.+...|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 01122333456667777766664
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.17 Score=40.61 Aligned_cols=153 Identities=8% Similarity=0.021 Sum_probs=95.7
Q ss_pred HcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCchHHHHHHHHHHhccCch
Q 018876 38 GRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ---GIRPNTVTYNTLIDAYGRAKMF 114 (349)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 114 (349)
...|++.+|-..++++.+.. |.|..++...=.++...|+...-...+++.... +++.....-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34566777777777777653 566667776677777788877777777776654 2222233334445556677888
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 018876 115 AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQP---SINTFNILLDSYGKAGHFEKMSAVM 191 (349)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 191 (349)
++|++.-++..+.+ +.|...-......+...|++.++.++..+-...--.. -..-|-...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88888888877765 5667777777777778888888877665533221000 0111212223345567888888888
Q ss_pred HH
Q 018876 192 EY 193 (349)
Q Consensus 192 ~~ 193 (349)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 54
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.76 Score=41.24 Aligned_cols=113 Identities=11% Similarity=0.061 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
...+.+--+..+...|+..+|.++-.+.+ -||-..|-.-+.+++..++|++.+++-+... ++.-|.-.+.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 33445555666778899999988877664 3688899989999999999998877766543 1356777889
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHH
Q 018876 247 AYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
+|.+.|+.++|.+.+.+..... -...+|.+.|++.+|.++--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l~---------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGLQ---------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCChH---------HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999887665321 467889999999999876543
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.30 E-value=0.13 Score=44.22 Aligned_cols=158 Identities=17% Similarity=0.134 Sum_probs=78.4
Q ss_pred HHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchH
Q 018876 36 AYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (349)
...-.++++++.++...-.-.+.+ | ....+.++..+-+.|..+.|+++..+-. .-.....+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 344566677766655421111111 2 3446666666667777777765543211 1223344566666
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018876 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
.|.++.++. .+...|..|.......|+++-|++.|.+..+ +..|+-.|.-.|+.+.-.++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 666554332 2455677777777777777777776665432 3455555666666666666666665
Q ss_pred hcCCCCchHHHHHHHHHHHhcCChHHHHHHHHH
Q 018876 196 KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
..|- ++....++.-.|+.++..+++.+
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5542 23333334445666666655543
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.28 E-value=0.52 Score=38.92 Aligned_cols=282 Identities=13% Similarity=0.030 Sum_probs=130.5
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhhHHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHH--HHHHHHHHHhcCChh
Q 018876 5 CKQPEKAHELFQAMVDEGCDANTQSFTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNT--YSILIKSCLKAFAFD 80 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 80 (349)
.|+-..|.++-.+-.+. +..|......++.+ -.-.|+++.|.+-|+.|... |.... ...|.-..-+.|+.+
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHH
Confidence 34555555554443321 12233333333333 33456666666666666543 22221 122222233456666
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC-CCcchhh--HHHHHHHH---HccCCHHHHHH
Q 018876 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWT--MNCTLRAF---GNSGQIDTMEK 154 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~~~~~~a~~ 154 (349)
.|.+.-+...... +--...+...+...+..|+|+.|+++++.-.... +.++..- -..|+.+- .-..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 6666555554432 1123455566666666666666666666544332 1222111 11111110 01122333443
Q ss_pred HHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-
Q 018876 155 CYEKFQSAGIQPSINT-FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE- 232 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 232 (349)
.-.+..+. .|+..- --.-..++.+.|+..++-.+++.+-+..+.|+. +. +....+.|+ .+.+=+++....
T Consensus 251 ~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHHH
Confidence 33333322 333221 122235566777777777777776665544332 21 112233443 333333322211
Q ss_pred CCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc-CChHHHHHHHHHHHhc
Q 018876 233 RIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL-KCFAEMKGVLEVMQQR 302 (349)
Q Consensus 233 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~ 302 (349)
.++| +..+...+.++-...|++..|..--+..... .|....|..|.+.-... |+-.++...+.+..+.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1222 3344555566666667776666655555442 35566666666554433 7777777776666554
No 233
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.23 E-value=0.28 Score=35.43 Aligned_cols=126 Identities=7% Similarity=-0.009 Sum_probs=59.4
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchH-HHHHH--HHHHhccCc
Q 018876 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV-TYNTL--IDAYGRAKM 113 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~ 113 (349)
+.+.+..++|+.-|..+.+.+.-.-.....-.........|+...|...|++.-...-.|-.. -...| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 344555666666666665542111111122223334455566666666666655442222211 11111 112345566
Q ss_pred hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
++.+....+.+...+-+.....-..|.-+-.+.|++..|.+.|.++...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6666665555554443333333344444555666666666666665543
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.1 Score=42.93 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=69.0
Q ss_pred CCCCCChHHHHHHHHHHHhc-----CCC---------CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHH
Q 018876 2 LGKCKQPEKAHELFQAMVDE-----GCD---------ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYS 67 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 67 (349)
|.+.|++..|...|++.... +.+ .-..+++.+..++.+.+++..|++.-++..... ++|.-..-
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALy 295 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALY 295 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHH
Confidence 45778888888887775432 111 113345566666667777777777777666654 56666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCchHH-HHHHHHHHhccCch-HHHHHHHHHHhc
Q 018876 68 ILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVT-YNTLIDAYGRAKMF-AEMELTLVKMLS 126 (349)
Q Consensus 68 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~-~~a~~~~~~~~~ 126 (349)
.-..++...++++.|...|.++++. .|+... -+-|+.+-.+.... +...++|..|..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666677777777777777776665 333333 33333333333322 223445555543
No 235
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.21 E-value=0.013 Score=31.15 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhccCCCC
Q 018876 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPD 348 (349)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 348 (349)
.+++.+...|...|++++|..+++...++.....+.+.||
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 4667777778888888888888888888777777777775
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.19 E-value=0.16 Score=34.67 Aligned_cols=90 Identities=9% Similarity=-0.058 Sum_probs=50.2
Q ss_pred HHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchH---HHHHHHHHHhccC
Q 018876 36 AYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV---TYNTLIDAYGRAK 112 (349)
Q Consensus 36 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 112 (349)
+++..|+++.|++.|.+....- +.....||.-..++.-.|+.++|+.-+++..+..-..+.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4556677777777776666542 4556667777777766777777766666665542111222 2222233455556
Q ss_pred chHHHHHHHHHHhcc
Q 018876 113 MFAEMELTLVKMLSE 127 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~ 127 (349)
+.+.|..-|+..-+.
T Consensus 130 ~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 NDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHhHHHHHHh
Confidence 666666555544433
No 237
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.19 E-value=0.87 Score=40.69 Aligned_cols=125 Identities=11% Similarity=-0.001 Sum_probs=69.2
Q ss_pred CCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHH------HHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 018876 24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSIL------IKSCLKAFAFDKVQALLSDMSTQGIRPN 97 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 97 (349)
.|.+..|..+.......-.++.|...|-+.....|++.-...-... ...-.--|.+++|++++-+|-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 5888899999888888888888888887776654432211111100 111122477888888887776542
Q ss_pred hHHHHHHHHHHhccCchHHHHHHHHHHhccC-CCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 018876 98 TVTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYE 157 (349)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 157 (349)
..+..+.+.|+|-.+.++++.--... -..-...|+.+...+.....+++|.+.|.
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666665554321100 01112345555555555555555555443
No 238
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.62 Score=42.34 Aligned_cols=179 Identities=14% Similarity=0.151 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch--HHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 018876 66 YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT--VTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF 143 (349)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (349)
...-+..+.+...++-|..+-+ ..+..++. ........-+.+.|++++|...|-+.+.. +.| ..++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 3445666777777777776643 33322221 22333344456789999999888777643 233 2356667
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 018876 144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQME 223 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 223 (349)
.....+..-..+++.+.+.|.. +...-+.|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777788888889999998865 66667789999999999988777766554 2211 112344556666667677776
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018876 224 YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
.+-..... +......++ -..+++++|.+.+..+.
T Consensus 484 ~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 66554421 333444443 35678888888877654
No 239
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.06 E-value=0.6 Score=37.61 Aligned_cols=63 Identities=14% Similarity=0.019 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhccCch---HHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 018876 99 VTYNTLIDAYGRAKMF---AEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (349)
.++..++.+|...+.. ++|.++++.+.... +-....+..-+..+.+.++.+.+.+++.+|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3445556666655543 33444444443332 112334444455555566666666666666665
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.41 Score=37.43 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--chHHHHHHHH
Q 018876 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERI--KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LDTVFFNCLV 280 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li 280 (349)
.|+.-+..+ +.|++..|...|...++... .-....+.-|.+++...|+++.|...|..+.+..++ --+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444333 44455666665555554311 111223334555555666666665555555432111 1223444555
Q ss_pred HHHHccCChHHHHHHHHHHHhc
Q 018876 281 DAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 281 ~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555666666666666666554
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.57 Score=37.84 Aligned_cols=154 Identities=8% Similarity=-0.022 Sum_probs=97.1
Q ss_pred ccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHHH
Q 018876 110 RAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA---GIQPSINTFNILLDSYGKAGHFEK 186 (349)
Q Consensus 110 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 186 (349)
..|++.+|...++++.+.- +.|...++..=.+|...|+...-...++++... +.+.......++.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4567777777788877653 566667777777788888888777777776654 222223333444555667888888
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018876 187 MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER---IKPSCVTLCSLVRAYGHAGKPEKLGSVLRF 263 (349)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 263 (349)
|++.-++..+.+.. |.-.-.++...+.-.|+..++.++..+-...- --.-..-|-...-.+...+.++.|+.+|+.
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88888877776532 56666667777777888888887776543211 000112223333345556778888888865
Q ss_pred Hh
Q 018876 264 ID 265 (349)
Q Consensus 264 ~~ 265 (349)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
No 242
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.93 E-value=0.41 Score=34.73 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=12.5
Q ss_pred HHhcCCCCchHHHHHHHHHHHhcCCh
Q 018876 194 MQKYHYSWTIVTYNIVIDAFGRAGDL 219 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (349)
+.+.+++|+...+..++..+.+.|++
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33444444455555555555555443
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.68 Score=36.75 Aligned_cols=142 Identities=10% Similarity=0.072 Sum_probs=64.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHH
Q 018876 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTM 152 (349)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 152 (349)
....+++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+....-.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 445555555555555555442 1133444455555666666666666655554332111111111222333333333333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHhcC
Q 018876 153 EKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH-YSWTIVTYNIVIDAFGRAG 217 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 217 (349)
..+-.++-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.--|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333222 2245555555566666666666666554443321 1124445555555555545
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.86 E-value=0.8 Score=37.47 Aligned_cols=226 Identities=13% Similarity=0.073 Sum_probs=133.5
Q ss_pred CCCChHHHHHHHHHHHhcC--CCCchhhHHHHHHHHHcCCChhHHHHHHH----HhhcCCCCCCCHHHHHHHHHHHHhcC
Q 018876 4 KCKQPEKAHELFQAMVDEG--CDANTQSFTALLSAYGRSGLFDKAFSLLE----HMKNTPDCQPDVNTYSILIKSCLKAF 77 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (349)
...+.++|+..+..-..+- ......++..+..+.++.|.+++++..-- -..+...-..--..|..+.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776655431 11234567778888888998887665422 22221100112344556666666666
Q ss_pred ChhHHHHHHHHHHhC-CCCC---chHHHHHHHHHHhccCchHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHccCC
Q 018876 78 AFDKVQALLSDMSTQ-GIRP---NTVTYNTLIDAYGRAKMFAEMELTLVKMLSED-----CEPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 148 (349)
++.+++.+-..-... |..| .-.....+..+....+.++++++.|+...+.. ......++..+-..|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666655443332 2222 11233446667777788999999998876532 12234668888889999999
Q ss_pred HHHHHHHHHHHHh----cCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHh----cCCCC-chHHHHHHHHHHH
Q 018876 149 IDTMEKCYEKFQS----AGIQPSINTFN-----ILLDSYGKAGHFEKMSAVMEYMQK----YHYSW-TIVTYNIVIDAFG 214 (349)
Q Consensus 149 ~~~a~~~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~ 214 (349)
+++|.-+..+..+ .++..-..-|. .+.-++...|....|.+.-++..+ .|-.+ .......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9998876655433 23221112222 233456677887777777766543 33221 2344556777888
Q ss_pred hcCChHHHHHHHHHH
Q 018876 215 RAGDLKQMEYLFRLM 229 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~ 229 (349)
..|+.+.|+.-|+..
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 999999888777654
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.84 E-value=0.91 Score=39.17 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHH
Q 018876 202 TIVTYNIVIDAFGRAGDLKQMEYLFRL 228 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (349)
+...|..|.....+.|+++-|++.|.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344555555555555555555555544
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.76 E-value=0.052 Score=29.35 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=18.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
++..+...|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.74 E-value=0.16 Score=39.74 Aligned_cols=105 Identities=15% Similarity=0.305 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchh
Q 018876 60 QPDVNTYSILIKSCLKA-----FAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW 134 (349)
Q Consensus 60 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 134 (349)
.-|-.+|...+..+... +.++-.-..++.|.+-|+..|..+|+.|++.+-+..- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 45666676666665542 4455566677888888999999999998887755321 1110
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018876 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGH 183 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (349)
.+....-.|- .+-+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 1223356666666666766676666666666665554
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.69 E-value=0.045 Score=29.62 Aligned_cols=28 Identities=36% Similarity=0.361 Sum_probs=18.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcC
Q 018876 29 SFTALLSAYGRSGLFDKAFSLLEHMKNT 56 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 56 (349)
++..+...|.+.|++++|.++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666667777777777777766665
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.65 E-value=0.21 Score=39.56 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876 203 IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|...|+...|+..|+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3444445555555555555555555554443 344455555555555555555555555444
No 250
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.58 E-value=0.23 Score=39.41 Aligned_cols=78 Identities=12% Similarity=0.012 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhc-----cCCCcchhhHHH
Q 018876 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLS-----EDCEPDVWTMNC 138 (349)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 138 (349)
.++..++..+...++++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345555666666666666666666666653 33556666666666666666666666665543 255666555555
Q ss_pred HHHH
Q 018876 139 TLRA 142 (349)
Q Consensus 139 l~~~ 142 (349)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
No 251
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.33 Score=43.97 Aligned_cols=177 Identities=8% Similarity=0.095 Sum_probs=116.3
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHH----HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018876 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTL----RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (349)
....-+..+.+...++-|..+.+.- + .+..+...+. .-+.+.|++++|...|-+.... +.|+ .++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 3445666777778888888776553 2 2333333333 3456889999999888765543 2222 345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018876 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
.-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-+...+..|.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 5566666777778888999998876 77778889999999999999888877654 3322 122455667777777777
Q ss_pred hHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHH
Q 018876 256 KLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 299 (349)
+|..+-..... +..... ..+-..+++++|++.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 77766655443 222222 2345567888888877654
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=0.86 Score=35.11 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 018876 66 YSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~~~~~~ 89 (349)
|.....+|...+++++|...+.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 333344444445555555444443
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.39 E-value=0.62 Score=32.94 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=22.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876 138 CTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 138 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
.++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444555555555555555544 23455555555555544
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=95.30 E-value=1.6 Score=37.22 Aligned_cols=160 Identities=9% Similarity=0.021 Sum_probs=97.5
Q ss_pred HHH--HHHHHHHHhcC-----CHHHHHHHHHHHHhc-CCCCc-hHHHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 018876 169 NTF--NILLDSYGKAG-----HFEKMSAVMEYMQKY-HYSWT-IVTYNIVIDAFGR---------AGDLKQMEYLFRLMR 230 (349)
Q Consensus 169 ~~~--~~l~~~~~~~~-----~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 230 (349)
..| ..++++..... ..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++.+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 55666554422 356777888887721 22333 3444444333321 223445667777777
Q ss_pred hCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCC-CCCHH
Q 018876 231 SERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGC-KPDKV 309 (349)
Q Consensus 231 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~ 309 (349)
+.+ +.|......+..+....++++.|...|++....++. ....|........-.|+.++|.+.+++..+... +--..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 766 567777777777777788899999999998887642 445566666667778999999999888766521 11223
Q ss_pred HHHHHHHHHHccCchhhhHHHH
Q 018876 310 TYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
.....+..|+.++ .+.|.+++
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHH
Confidence 3344444666655 44555544
No 255
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.18 Score=40.13 Aligned_cols=105 Identities=15% Similarity=0.265 Sum_probs=71.9
Q ss_pred CCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchH
Q 018876 22 GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPD--CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV 99 (349)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 99 (349)
|.+.+..+...++..-....+++++...+-+++.... ..|+.. -.++++.+. .-++++++.++..=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4455566666667666667788888888887776422 112221 122333333 346778888888778888888888
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhccC
Q 018876 100 TYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
+++.+|+.+.+.+++.+|.++...|..+.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877776553
No 256
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.21 E-value=1.7 Score=36.87 Aligned_cols=145 Identities=14% Similarity=0.087 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhccC-CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018876 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSED-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
.+|..+++...+..-++.|..+|-++.+.+ +.+++..+++++..++. |+...|.++|+.-... .+.+..-..-.+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 456667777777777888888888888887 56777888888877654 6777888888775544 22233333456667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 018876 178 YGKAGHFEKMSAVMEYMQKYHYSWT--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAY 248 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (349)
+...++-+.|..+|+....+ +..+ ...|..+|..-..-|+...+..+-+.|.+. .|-..+......-|
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 77888888888888854432 1112 567888888878888888888777777653 34443333333333
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.20 E-value=0.7 Score=32.45 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=22.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876 179 GKAGHFEKMSAVMEYMQKYHYS--WTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
.+.|++++|.+.|+.+...-+. -....--.++.+|.+.+++++|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444455555544444433211 11233333444444444444444444444443
No 258
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.13 E-value=0.67 Score=31.89 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=72.1
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 018876 144 GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQME 223 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 223 (349)
.-.|..++..++..+..... +..-++.+|.-....-+-+...+.++.+-+. .|.. ..|+.....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHH
Confidence 34577777777777766543 4444555554444444444444444444322 1211 223333333
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876 224 YLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 303 (349)
..+-.+ ..+...+...+..+...|+-+...+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333221 1223445555666777777777777777776533 4566777777888888888888888888887777
Q ss_pred CC
Q 018876 304 CK 305 (349)
Q Consensus 304 ~~ 305 (349)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 53
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.04 E-value=1.2 Score=34.28 Aligned_cols=224 Identities=13% Similarity=-0.060 Sum_probs=134.8
Q ss_pred cCChhHHHHHHHHHHhCCCC-CchHHHHHHHHHHhccCchHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHccCCHHHHH
Q 018876 76 AFAFDKVQALLSDMSTQGIR-PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE-DCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 76 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35555666666666554322 12466666777777778888887777776642 22444555666666677777777888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018876 154 KCYEKFQSAGIQPSINTFNILLD-SYGKAGHFEKMSAVMEYMQKYHY--SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8887777654332 122222223 67778888888888877754221 1123333334444556677777877777776
Q ss_pred hCCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 231 SERIKP-SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 231 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
... .. ....+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+......
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 543 22 3556666677777777777777777777664322 2333344444444566677777777766665
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.99 E-value=0.47 Score=35.12 Aligned_cols=98 Identities=10% Similarity=0.108 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHH---H
Q 018876 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPD-CQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN---T 103 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ 103 (349)
..+..+...|.+.|+.+.|++.|.++..... ...-...+-.++......+++..+...+.+....--.+...... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4567778888888888888888888776421 01123445667777778888888877777665431111111111 1
Q ss_pred HHH--HHhccCchHHHHHHHHHHh
Q 018876 104 LID--AYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 104 l~~--~~~~~~~~~~a~~~~~~~~ 125 (349)
... .+...+++..|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1233566777776665553
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.99 E-value=1.5 Score=35.28 Aligned_cols=162 Identities=12% Similarity=0.140 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876 170 TFNILLDSYGKAGHFE---KMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 170 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
+...++.++...+..+ +|.++++.+...... .+..+..-+..+.+.++.+.+.+.+.+|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4556666666666544 455555555444322 34555555666666777888888888887652 212234444444
Q ss_pred HH---HhcCChhhHHHHHHHHhhCCCCchHH-HHHHH-HHH---HHccC------ChHHHHHHHHHHHhc-CCCCCHHHH
Q 018876 247 AY---GHAGKPEKLGSVLRFIDNSDIMLDTV-FFNCL-VDA---YGRLK------CFAEMKGVLEVMQQR-GCKPDKVTY 311 (349)
Q Consensus 247 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l-i~~---~~~~g------~~~~a~~~~~~~~~~-~~~p~~~~~ 311 (349)
.+ ... ....+...+..+....+.|... ....+ +.. ..+.+ +.+....+++...+. +.+.+..+-
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 332 2344555555554333333332 11111 111 11111 133444444433322 223333332
Q ss_pred HHHH-------HHHHccCchhhhHHHHHHH
Q 018876 312 RTMV-------RAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 312 ~~l~-------~~~~~~g~~~~a~~~~~~~ 334 (349)
.++. ..+.+.++++.|.+.++..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2222 2356678899999888754
No 262
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.97 E-value=1.5 Score=34.94 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=27.5
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018876 131 PDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA-GIQPSINTFNILLDSYGKAGHFEKMSAVM 191 (349)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 191 (349)
++..+...++..++..+++.+..++++..... +...|...|..+|+.....|+..-...+.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 33344444444444444554444444443333 23334444444455444455444444443
No 263
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.89 E-value=2.1 Score=36.33 Aligned_cols=42 Identities=2% Similarity=-0.007 Sum_probs=20.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHH
Q 018876 138 CTLRAFGNSGQIDTMEKCYEKFQSAG----IQPSINTFNILLDSYG 179 (349)
Q Consensus 138 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~ 179 (349)
..+.++...|++.++..+++++...= ..-+..+|+.++-.+.
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 33444555666666655555554432 2245555555444443
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.88 E-value=0.8 Score=31.47 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=25.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018876 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+...|+.+.|++.|.+....-+. ....||.-..++.-.|+.++|++=+++..
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 34445555555555544443222 44455555555555555555555444444
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.82 E-value=0.94 Score=32.00 Aligned_cols=127 Identities=8% Similarity=0.005 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
...++..+...+........++.+...+. .+....+.++..|++.+ ..+....+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34567777778889999999998887764 57888899999998764 3444455442 1233445567788888
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc-CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 018876 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL-KCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYST 320 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 320 (349)
.+.++++..++..+.. ... .+..+... ++++.|.+++.+- .++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 8888888888876643 122 23333333 7788888877641 267788888877654
No 266
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.80 E-value=0.55 Score=34.78 Aligned_cols=62 Identities=19% Similarity=0.118 Sum_probs=36.7
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhccCCCcc--hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPD--VWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+++...-.+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666677777777777766665532222 34445566666666666666666655543
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.52 E-value=0.12 Score=26.47 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=13.6
Q ss_pred HHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876 311 YRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
|..|...|.+.|++++|.++++....+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555555555555555555554433
No 268
>PRK11906 transcriptional regulator; Provisional
Probab=94.51 E-value=2.7 Score=35.93 Aligned_cols=162 Identities=13% Similarity=0.028 Sum_probs=103.8
Q ss_pred hhH--HHHHHHHHcc-----CCHHHHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 018876 134 WTM--NCTLRAFGNS-----GQIDTMEKCYEKFQSA-GIQPS-INTFNILLDSYGK---------AGHFEKMSAVMEYMQ 195 (349)
Q Consensus 134 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 195 (349)
..| ...+.+.... ...+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5555554432 2356688889888722 23343 4455544443332 234566777777788
Q ss_pred hcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCch-HH
Q 018876 196 KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLD-TV 274 (349)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 274 (349)
+.+.. |+.....+..+....++.+.|..+|++....+ +-...+|......+.-.|+.++|.+.+++..+..+.-- ..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 77644 78888888887788888999999999988764 33455666666667779999999999999776543222 22
Q ss_pred HHHHHHHHHHccCChHHHHHHHHH
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
.....+..|+..+ .+.|.+++-+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhh
Confidence 3333444666654 5666666543
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.48 E-value=1.3 Score=32.17 Aligned_cols=140 Identities=13% Similarity=0.077 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchH-HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchh-hHHH
Q 018876 61 PDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV-TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW-TMNC 138 (349)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 138 (349)
.....|...++ +.+.+..++|+.-|..+.+.|..--+. ............|+...|...|+++-.....|-.. -...
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34566666665 456778899999999999987542221 12223455678899999999999998765445433 1122
Q ss_pred HH--HHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018876 139 TL--RAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW 201 (349)
Q Consensus 139 l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (349)
+= -.+...|.+++.....+-+...+.+.-...-..|.-+-.+.|++..|...|..+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22 2356889999999888888776655555666778788889999999999999987654333
No 270
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=1.4 Score=35.33 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876 218 DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
++++++.++..=++-|+.||..+++.++..+.+.+++..|.++...+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33444444444444455555555555555555555554444444443
No 271
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.42 E-value=1.9 Score=33.82 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=27.8
Q ss_pred CchHHHHHHHHHHhccCCCcchh---hHHHHHHHHHccCCHHHHHHHHHHHH
Q 018876 112 KMFAEMELTLVKMLSEDCEPDVW---TMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
.+.++|+.-|+++.+.......+ ....++....+.+++++....+.++.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 45667777777666542222222 23345566666677766666666654
No 272
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.37 E-value=2.3 Score=34.53 Aligned_cols=131 Identities=13% Similarity=0.168 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHhcCCh-
Q 018876 150 DTMEKCYEKFQSAGIQPSINTFNILLDSYGK--AG----HFEKMSAVMEYMQKYHY---SWTIVTYNIVIDAFGRAGDL- 219 (349)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~- 219 (349)
++...+++.|.+.|+.-+..+|-+....... .. ....|..+++.|++..+ .++-..+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455666777777776665554432222222 11 24567777777777653 2233344444332 33332
Q ss_pred ---HHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHhcCC--hhhHHHHHHHHhhCCCCchHHHHHHHHHH
Q 018876 220 ---KQMEYLFRLMRSERIKPSC--VTLCSLVRAYGHAGK--PEKLGSVLRFIDNSDIMLDTVFFNCLVDA 282 (349)
Q Consensus 220 ---~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (349)
+.++.+|+.+.+.|...+. ...+.++..+..... ...+..+++.+.+.++++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 4456677777666654432 222333322222111 33567777778888877777666655433
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=2.1 Score=34.10 Aligned_cols=144 Identities=12% Similarity=0.108 Sum_probs=80.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhh
Q 018876 177 SYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEK 256 (349)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (349)
.....|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 455667777777777777665433 3455556677777777777777777766433211122222223344444444444
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCch
Q 018876 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR--GCKPDKVTYRTMVRAYSTNGMK 324 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~ 324 (349)
...+-...-.. + -|...-..+...+...|+.++|.+.+-.+.+. |.. |...-..++..+.-.|..
T Consensus 222 ~~~l~~~~aad-P-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 222 IQDLQRRLAAD-P-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCC
Confidence 44444444332 1 15555556777777778877777766555544 332 445555666665555533
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.33 E-value=0.12 Score=26.37 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=20.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHH
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~ 300 (349)
+|+.|...|.+.|++++|..++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999999998854
No 275
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.23 E-value=4 Score=36.71 Aligned_cols=244 Identities=11% Similarity=-0.004 Sum_probs=133.8
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHH----HH-HHhcCChhHHHHHHHHHHh-------CCCCCchHHHHHHHHHHhc
Q 018876 43 FDKAFSLLEHMKNTPDCQPDVNTYSILI----KS-CLKAFAFDKVQALLSDMST-------QGIRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 110 (349)
...|.++++.....+ +...-..+. .+ ....+|.+.|..++..+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 456888888877664 222222222 22 3356788899999888876 44 33355666677766
Q ss_pred cC-----chHHHHHHHHHHhccCCCcchhhHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----h
Q 018876 111 AK-----MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN-SGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG----K 180 (349)
Q Consensus 111 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 180 (349)
.. +.+.|..++.+.-..| .|+....-..+..... ..+...|.++|....+.|.. .. +-.+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A--~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LA--IYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HH--HHHHHHHHHhCCCc
Confidence 43 5677899998888777 5555443333332222 34678899999998888743 22 222222222 2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH-HH---Hh----cC
Q 018876 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR-AY---GH----AG 252 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~----~~ 252 (349)
..+...|...+.+.-+.+ .|...--...+..+.. +.++.+.-.+..+.+.+... ..+-...+. .. .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhcccccccccccc
Confidence 346888888888888877 3222222222333333 66777766666665554321 111111111 11 11 12
Q ss_pred ChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHcc----CChHHHHHHHHHHHhcC
Q 018876 253 KPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRL----KCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~ 303 (349)
+.+.+...+......| +......+...|... .+++.|...+......+
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 3444555555555443 344444555554432 34666666666666554
No 276
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.20 E-value=2.1 Score=33.39 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=31.1
Q ss_pred HccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018876 144 GNSGQIDTMEKCYEKFQSAGI--QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYH 198 (349)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (349)
.+.|++++|.+.|+.+..... +-...+--.++-++.+.++++.|+..+++.....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 355666666666666654421 1123344445556666666666666666665544
No 277
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.19 E-value=3.1 Score=35.35 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHhhCCCCc----hHHHHHHHHHH--HHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhh
Q 018876 254 PEKLGSVLRFIDNSDIML----DTVFFNCLVDA--YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHA 327 (349)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~----~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 327 (349)
+.+...+-+.+.+.|+.| +...-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 333444444455566654 33455555554 4568888888766555554 478999999999899999999999
Q ss_pred HHHHHHH
Q 018876 328 KEFQDLV 334 (349)
Q Consensus 328 ~~~~~~~ 334 (349)
..++..+
T Consensus 515 ~~~l~~L 521 (549)
T PF07079_consen 515 WEYLQKL 521 (549)
T ss_pred HHHHHhC
Confidence 8888765
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.02 E-value=1.6 Score=31.38 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=63.5
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccC
Q 018876 33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK 112 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (349)
++..-.+.++.+++..++..++-..+-.|...++.. ..+...|++.+|..+|+++...+ |....-..|+..|....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence 334455677888888888888765322233333333 34668888888888888877653 44444445555554443
Q ss_pred chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHH
Q 018876 113 MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTME 153 (349)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (349)
.-..-...-+++.+.+..|+.. .+++.+....+...|.
T Consensus 92 ~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAH 129 (160)
T ss_pred CChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence 3333444445566554444432 3445554444444443
No 279
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.99 E-value=0.072 Score=26.87 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=17.2
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHcCCChhHHH
Q 018876 16 QAMVDEGCDANTQSFTALLSAYGRSGLFDKAF 47 (349)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 47 (349)
++.++.. |-+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344432 445666666666666666666654
No 280
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.72 E-value=2.4 Score=32.47 Aligned_cols=227 Identities=15% Similarity=0.026 Sum_probs=154.7
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCchHHHHHHHHHHhccCchHHHH
Q 018876 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPNTVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 118 (349)
.+....+...+...............+......+...+.+..+...+...... ........+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666677777666654210113567777888888889999888888887652 23445566777777777888888999
Q ss_pred HHHHHHhccCCCcchhhHHHHHH-HHHccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018876 119 LTLVKMLSEDCEPDVWTMNCTLR-AFGNSGQIDTMEKCYEKFQSAGI--QPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9998888654333 122223333 78899999999999999865321 1233344444455677889999999999888
Q ss_pred hcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018876 196 KYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSD 268 (349)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (349)
..........+..+...+...++++.+...+......... ....+......+...+..+.+...+.......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7643224677778888888888999999999988765321 23444444445556677888888888877654
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.72 E-value=1.8 Score=31.07 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=62.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHH-HHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCC
Q 018876 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNT-LIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQ 148 (349)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (349)
+..-.+.++.+.+..++..+.-. .|....... -...+...|+|.+|..+++++... .|.......|+..|....+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcC
Confidence 34455677888888888888765 344332222 223456788899999999988765 3433344445544444333
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018876 149 IDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSA 189 (349)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (349)
-..=...-+++.+.+..|+. ..+++.+....+...|..
T Consensus 93 D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred ChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 22223333445555444443 234555555555544444
No 282
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.55 E-value=4.9 Score=35.42 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=63.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHH-cCCChhHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHhcCChhH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYG-RSGLFDKAFSLLEHMKNTPDCQ-PDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 81 (349)
+.|..+.+.++|++-.+ |++.+...|......+. ..|+.+.....|+.....-|.. -....|...+..-...+++..
T Consensus 91 klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 45778888999998887 46777777877666544 4577778888888877654321 234557777777777888888
Q ss_pred HHHHHHHHHhC
Q 018876 82 VQALLSDMSTQ 92 (349)
Q Consensus 82 a~~~~~~~~~~ 92 (349)
...++++.++.
T Consensus 170 v~~iyeRilei 180 (577)
T KOG1258|consen 170 VANIYERILEI 180 (577)
T ss_pred HHHHHHHHHhh
Confidence 88888887764
No 283
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.37 E-value=2.7 Score=31.92 Aligned_cols=185 Identities=14% Similarity=0.054 Sum_probs=105.1
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHH
Q 018876 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE 116 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 116 (349)
|-..|-..-|.--|.+..... |.-+.+||-+.-.+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-
T Consensus 75 YDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHh
Confidence 334455555555566555442 3345678888888888999999999999988874332333333333 3335688888
Q ss_pred HHHHHHHHhccCC-CcchhhHHHHHHHHHccCCHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Q 018876 117 MELTLVKMLSEDC-EPDVWTMNCTLRAFGNSGQIDTMEKCY-EKFQSAGIQPSINTFNILLDSYGK-AGHFEKMSAVMEY 193 (349)
Q Consensus 117 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~ 193 (349)
|.+-+.+.-+.+. .|-...|-.+. .+.-++.+|..-+ ++... .|..-|...|-.+.- .=..+. +++.
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~---l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET---LMER 221 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH---HHHH
Confidence 8887777766531 22222332222 2334555555433 33332 244445444333321 112222 2222
Q ss_pred HHhcCC------CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 018876 194 MQKYHY------SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERI 234 (349)
Q Consensus 194 ~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (349)
+....- ..-..||--+...+...|+.++|..+|+-....++
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 222111 11257888888899999999999999988876653
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.35 E-value=4.2 Score=34.02 Aligned_cols=202 Identities=11% Similarity=0.095 Sum_probs=104.8
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CchHHHHHHHHHH
Q 018876 33 LLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIR----PNTVTYNTLIDAY 108 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~ 108 (349)
...+..+.|+++...+........ .++...+..+... +.++++++...++.....-.. .....|.......
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~---~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l 78 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED---SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL 78 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC---ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 355677778888755555544432 2445555544433 777888777777766553100 0111222222222
Q ss_pred hccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018876 109 GRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (349)
.+...+.+..++.+-..... .+ ..+.....+.|+.=.. ...++..++..++..-.-
T Consensus 79 ~~lq~L~Elee~~~~~~~~~--~~-------------~~~~~~l~~~W~~Rl~-~~~~~~~~~~~il~~R~~-------- 134 (352)
T PF02259_consen 79 VKLQQLVELEEIIELKSNLS--QN-------------PQDLKSLLKRWRSRLP-NMQDDFSVWEPILSLRRL-------- 134 (352)
T ss_pred HHHhHHHHHHHHHHHHHhhc--cc-------------HHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHH--------
Confidence 22222222222222211110 00 1112222333332221 234566666555532110
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018876 189 AVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKP---SCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
++..+ ........+|..++..+.+.|+++.|...+..+...+... .+.....-.+..-..|+..+|...++...
T Consensus 135 -~l~~~--~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 135 -VLSLI--LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred -HHhcc--cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 1223356778888999999999999999999887643111 33445555667778899999999988877
Q ss_pred h
Q 018876 266 N 266 (349)
Q Consensus 266 ~ 266 (349)
.
T Consensus 212 ~ 212 (352)
T PF02259_consen 212 K 212 (352)
T ss_pred H
Confidence 6
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.34 E-value=2.3 Score=30.99 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=20.5
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHH
Q 018876 14 LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLL 50 (349)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 50 (349)
.+..+.+.+++|+...+..+++.+.+.|++.....++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444445556666666666666666666655444443
No 286
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.34 E-value=4.2 Score=33.96 Aligned_cols=290 Identities=13% Similarity=0.106 Sum_probs=174.6
Q ss_pred hHHHHHHHHH--cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCchHH--HH
Q 018876 29 SFTALLSAYG--RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKS--CLKAFAFDKVQALLSDMSTQGIRPNTVT--YN 102 (349)
Q Consensus 29 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 102 (349)
.|..|-.++. ..|+-..|.++-.+..+. +..|....-.++.+ ..-.|+++.|.+-|+.|... |.... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 3555555544 456777777776665432 23455555555543 44579999999999999863 33222 22
Q ss_pred HHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCHH--HHHHHHHHHH
Q 018876 103 TLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-IQPSIN--TFNILLDSYG 179 (349)
Q Consensus 103 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~ 179 (349)
.|.-.--+.|..+.|.++-+..-... +--...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 33334456788888888887776553 3335677888899999999999999998765543 233322 1222332211
Q ss_pred ---hcCCHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018876 180 ---KAGHFEKMSAVMEYMQKYHYSWTIVT-YNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 180 ---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
-..+...|...-.+..+. .|+..- --.-..++.+.|+..++-.+++.+-+.. |.+.++...+ ..+.|+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd-- 309 (531)
T COG3898 238 MSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD-- 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC--
Confidence 123455555555444443 344332 2234567889999999999999987764 4444433322 344554
Q ss_pred hHHHHHHHHhhC-CCCc-hHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCchhhhHHHHH
Q 018876 256 KLGSVLRFIDNS-DIML-DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY-STNGMKNHAKEFQD 332 (349)
Q Consensus 256 ~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~ 332 (349)
.+..-+++.... .++| +....-.+..+-...|++..|..--+...+. .|....|..|.+.- ...|+-.++...+.
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 333333333211 1222 4556666777888889998888777766654 67777777777754 34487777776655
Q ss_pred HH
Q 018876 333 LV 334 (349)
Q Consensus 333 ~~ 334 (349)
..
T Consensus 388 qa 389 (531)
T COG3898 388 QA 389 (531)
T ss_pred HH
Confidence 43
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.24 E-value=0.11 Score=26.21 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHccCChHHH
Q 018876 272 DTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 272 ~~~~~~~li~~~~~~g~~~~a 292 (349)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
No 288
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.22 E-value=3.2 Score=32.38 Aligned_cols=54 Identities=7% Similarity=0.046 Sum_probs=26.9
Q ss_pred HhcCChhHHHHHHHHHHhCCC--CCchHHHHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876 74 LKAFAFDKVQALLSDMSTQGI--RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.+.|++++|.+.|+.+..... +-...+.-.++-++.+.++++.|...+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 445566666666665554411 112233334444555555566665555555544
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.16 E-value=8.6 Score=37.08 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
|.+....+.....+++|.-.|+..-+. .-.+.+|..+|+|.+|..+..++.... .--..+-..|+.-+..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHH
Confidence 344444455566666666666544221 224556677778888777777664211 0111122456666777
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHH
Q 018876 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 299 (349)
.+++-+|-++..+.... |. ..+..|++...|++|.++....
T Consensus 1012 ~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred cccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 77777777766655432 11 2334455666666666655433
No 290
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.15 E-value=5.2 Score=34.58 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-chHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876 240 TLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM-LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
+-..+..++-+.|+.++|.+.++++.+.... -+..+...|+.++...+.+.++..++.+..+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3344555666677777777777776543221 1334555677777777777777777766544
No 291
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.10 E-value=4.3 Score=33.49 Aligned_cols=227 Identities=10% Similarity=-0.023 Sum_probs=111.8
Q ss_pred HHcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHH----HHHhCC-CCCchHHHHHHHHHHhc
Q 018876 37 YGRSGLFDKAFSLLEHMKNTPD-CQPDVNTYSILIKSCLKAFAFDKVQALLS----DMSTQG-IRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~ 110 (349)
+....+.++|+..+.+....-. ...-..++..+..+.++.|.+++++..-- -..+.. -..--..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777776654311 01122345566667777777666554322 111110 00012234444455555
Q ss_pred cCchHHHHHHHHHHhcc-CCCc---chhhHHHHHHHHHccCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhc
Q 018876 111 AKMFAEMELTLVKMLSE-DCEP---DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG-----IQPSINTFNILLDSYGKA 181 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 181 (349)
.-++.+++.+-..-... |..| .-.....+..++...+.++++++.|+...+.- ......++..|-..|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555544433322 1111 11223345556666677777777777654421 112344566777777777
Q ss_pred CCHHHHHHHHHHHHh----cCCCCch------HHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCc-HHHHHHHHH
Q 018876 182 GHFEKMSAVMEYMQK----YHYSWTI------VTYNIVIDAFGRAGDLKQMEYLFRLMR----SERIKPS-CVTLCSLVR 246 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~----~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~l~~ 246 (349)
.|.++|.-...+..+ .++. |. ...-.+.-++...|....|.+.-++.. ..|-.+. ......+..
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 777777666554432 2211 11 111223334455666666666555542 2232221 223344555
Q ss_pred HHHhcCChhhHHHHHHHH
Q 018876 247 AYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~ 264 (349)
.|-..|+.+.|+.-|+..
T Consensus 255 IyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHhcccHhHHHHHHHHH
Confidence 666667777666655544
No 292
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.86 E-value=7.4 Score=35.55 Aligned_cols=90 Identities=13% Similarity=0.177 Sum_probs=45.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHH-HHccCC-----------hHHHHHHHHHHHhcC-----CC
Q 018876 243 SLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDA-YGRLKC-----------FAEMKGVLEVMQQRG-----CK 305 (349)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~-----------~~~a~~~~~~~~~~~-----~~ 305 (349)
....-+...|+++.|..+|..+.+... -....|.++.- ...... ...|..+.+.....+ +.
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d~--vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~ 496 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYDK--VLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS 496 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HHH--HHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc
Confidence 334556678888888888887765321 22233333322 222222 344555555444332 11
Q ss_pred -CCHHHHHHHHH-----HHHccCchhhhHHHHHHH
Q 018876 306 -PDKVTYRTMVR-----AYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 306 -p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~ 334 (349)
.+..|+..|+. -+.+.|+++.|.+.++.+
T Consensus 497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 12455555554 357789999888776654
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.79 E-value=1.4 Score=28.44 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018876 222 MEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFID 265 (349)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 265 (349)
+.+-++.+....+.|++.+..+.+++|-+.+++..|.++++-++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444443
No 294
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.72 E-value=2.5 Score=29.77 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=40.6
Q ss_pred HHccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 018876 143 FGNSGQIDTMEKCYEKFQSAGI--QPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (349)
..+.|++++|.+.|+.+...-. +-....--.++.+|.+.+++++|...+++..+.++.....-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3456677777777766665411 11234445566667777777777777777666654333344444444443
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.69 E-value=0.32 Score=24.25 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=15.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
+|..+...|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555555666666666666666655544
No 296
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.67 E-value=6.2 Score=34.16 Aligned_cols=59 Identities=12% Similarity=0.042 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018876 172 NILLDSYGKAGHFEKMSAVMEYMQKYHYS-WTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 172 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
..+..++.+.|+.++|++.++++.+.... ........|+.++...+.+.++..++.+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33445555666666666666666543322 123355556666666666666666666653
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.63 E-value=10 Score=36.60 Aligned_cols=87 Identities=13% Similarity=0.070 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018876 205 TYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
.|.+....+.....+++|.-.|+..-+ ....+.+|...|++.+|+.+...+....-. -..+-..|+.-+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHH
Confidence 344444555567777777777765422 223467788888888888888776542211 1122356777788
Q ss_pred ccCChHHHHHHHHHHHh
Q 018876 285 RLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 285 ~~g~~~~a~~~~~~~~~ 301 (349)
..+++-+|.+++.+...
T Consensus 1011 e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HcccchhHHHHHHHHhc
Confidence 88888888888877664
No 298
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.56 E-value=2.9 Score=31.36 Aligned_cols=79 Identities=6% Similarity=-0.067 Sum_probs=54.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHccCCH
Q 018876 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---DCEPDVWTMNCTLRAFGNSGQI 149 (349)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 149 (349)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.+..+. +-.+|+..+..|...+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444454 667777777777765556666666666665 56677888887776643 3366788888888888888888
Q ss_pred HHHH
Q 018876 150 DTME 153 (349)
Q Consensus 150 ~~a~ 153 (349)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.53 E-value=0.47 Score=23.60 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=16.6
Q ss_pred HHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 310 TYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+|..+..+|...|++++|...+++..++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 455555556666666666666665555544
No 300
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.39 E-value=1.8 Score=27.98 Aligned_cols=44 Identities=9% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018876 152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
+.+-++.+......|++....+.+++|.+.+++..|.++|+-++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555544
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.39 E-value=0.49 Score=23.42 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=14.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.|..+...+...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543
No 302
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.89 E-value=10 Score=34.86 Aligned_cols=254 Identities=9% Similarity=-0.045 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Q 018876 65 TYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144 (349)
Q Consensus 65 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (349)
.-...+..+.+.+++......+. . .+.+...-.....+....|+.++|....+.+=..| ......++.++..+.
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~ 174 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQ 174 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHH
Confidence 33444555666677776665221 1 23455555667777778888777777666665554 334556777777777
Q ss_pred ccCCHHHHH--HHHHHHHhcCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 018876 145 NSGQIDTME--KCYEKFQSAGIQPSINTFNILLDSYGK------------AGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 145 ~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
+.|...... +-+..+...| +...-..+...+.. ..+...+...+.. .+++...-..++
T Consensus 175 ~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~ 246 (644)
T PRK11619 175 QSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAA 246 (644)
T ss_pred HcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHH
Confidence 666543322 1122222222 22222222221100 0011111111110 112221111111
Q ss_pred HHHH--hcCChHHHHHHHHHHHhCC-CCCcH--HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc
Q 018876 211 DAFG--RAGDLKQMEYLFRLMRSER-IKPSC--VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 211 ~~~~--~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
.++. ...+.+.|..++....... ..+.. .+...+.......+...++...++...... .+......-+..-.+
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~ 324 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHH
Confidence 1221 2344577777777653332 22211 223333333333322444555555443322 133334444555557
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018876 286 LKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 286 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
.++++.+...+..|.... .-...-.--+.+++...|+.++|..+++.+.
T Consensus 325 ~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred ccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777777777664432 1133333445556566777777777776653
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.71 E-value=3.5 Score=29.22 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=27.3
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 018876 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ 92 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 92 (349)
..++++++..+++.|.-..+-.+...++...+ +...|++.+|..+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 35666666666666654422122333333333 44666666666666666655
No 304
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.69 E-value=5.8 Score=31.70 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=37.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018876 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (349)
++...+.|...|.+.+|.++.++..... +.+...+..++..+...||--.+..-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444556667777777777777766653 446666777777777777766665555554
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.57 E-value=0.51 Score=23.36 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 309 VTYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
..|..+...+...|++++|++.++...++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4577888899999999999999999888765
No 306
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.33 E-value=8.9 Score=33.09 Aligned_cols=97 Identities=8% Similarity=0.022 Sum_probs=64.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 018876 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG 214 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (349)
........+...|+++.+.+.+...... +.....+...+++...+.|++++|...-.-|....+. ++..........-
T Consensus 325 ~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~ 402 (831)
T PRK15180 325 LIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSAD 402 (831)
T ss_pred hhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHH
Confidence 3334444566778888888777665543 2335566777888888888888888888877766554 4444444444444
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 018876 215 RAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~ 233 (349)
..|-++++...|+++...+
T Consensus 403 ~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 403 ALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHhHHHHHHHHHHHHhccC
Confidence 5667788888888776544
No 307
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.29 E-value=2.9 Score=27.37 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=23.6
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 257 LGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+-.+.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4444455555555556666666666666666666666666555543
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.10 E-value=4.1 Score=28.88 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHHhcCCCCchhh-HHHHHHHHHcCCChhHHHHHHHHhhcCC
Q 018876 5 CKQPEKAHELFQAMVDEGCDANTQS-FTALLSAYGRSGLFDKAFSLLEHMKNTP 57 (349)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 57 (349)
.++++++..+++.|.-. .|+... -..-...+...|++.+|+.+|+.+.+..
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 57788899999988765 454332 2333445789999999999999998763
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.03 E-value=3.6 Score=30.91 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=19.0
Q ss_pred cCChhhHHHHHHHHhhC---CCCchHHHHHHHHHHHHccCChHHH
Q 018876 251 AGKPEKLGSVLRFIDNS---DIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
..+.+++..++....+. +-.+|+..+..|+..|.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44455555544443321 1134444555555555555554444
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.99 E-value=0.72 Score=24.12 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.+++.+...|...|++++|..++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788888889999999999888887653
No 311
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.87 E-value=3.8 Score=30.74 Aligned_cols=90 Identities=9% Similarity=0.011 Sum_probs=67.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc
Q 018876 211 DAFGRAGDLKQMEYLFRLMRSERIKPS-----CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (349)
.-+...|++++|..-|...++.- ++. ...|..-..++.+.+.++.|+.-....++.++. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 34678899999999999988753 222 234455556778889999999988888887642 33344444667888
Q ss_pred cCChHHHHHHHHHHHhc
Q 018876 286 LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 286 ~g~~~~a~~~~~~~~~~ 302 (349)
...+++|+.=|+.+...
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999999887
No 312
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.62 E-value=13 Score=33.63 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=55.8
Q ss_pred CCCCChHHHHHHHHHHHh-------cCCCCchhhHHHHHHHHHcCC-----ChhHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 018876 3 GKCKQPEKAHELFQAMVD-------EGCDANTQSFTALLSAYGRSG-----LFDKAFSLLEHMKNTPDCQPDVNTYSILI 70 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 70 (349)
+...+++.|...|+...+ .| .+.+...+..+|.+.. +.+.|..++......+ .|+.......+
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~ 334 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVL 334 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 345566666666666555 33 3334445555555432 4455666666655543 34444332222
Q ss_pred HHHHh-cCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHh----ccCchHHHHHHHHHHhccC
Q 018876 71 KSCLK-AFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYG----RAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 71 ~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~ 128 (349)
..... ..+...|.++|....+.|.. ..+-.+..+|. ...+...|..++.+.-+.|
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 22222 23455666666666665532 11111222221 1234555666666655555
No 313
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.39 E-value=0.91 Score=22.47 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=16.8
Q ss_pred HHHHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 310 TYRTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
+|..+...|...|+++.|.+.++...++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555555566666666666665555543
No 314
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.99 E-value=10 Score=31.66 Aligned_cols=198 Identities=13% Similarity=0.073 Sum_probs=108.0
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCC---CCCCHHHHHHHHHHHHhcCChh
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPD---CQPDVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 80 (349)
+.|+++...+........ .++...+..+... ..++++++....+.....-. .......|......+.+...+.
T Consensus 10 rl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~ 85 (352)
T PF02259_consen 10 RLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLV 85 (352)
T ss_pred hcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHH
Confidence 457777744444444332 2344445444433 88999999888887765310 0111223333333333333333
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018876 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
+..++.+-..... .+ ..+.....+.++.=.. ...++..++..++..-.. ++..+
T Consensus 86 Elee~~~~~~~~~--~~-------------~~~~~~l~~~W~~Rl~-~~~~~~~~~~~il~~R~~---------~l~~~- 139 (352)
T PF02259_consen 86 ELEEIIELKSNLS--QN-------------PQDLKSLLKRWRSRLP-NMQDDFSVWEPILSLRRL---------VLSLI- 139 (352)
T ss_pred HHHHHHHHHHhhc--cc-------------HHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHH---------HHhcc-
Confidence 3333333322211 01 1222223333333222 235666666666543110 11101
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876 161 SAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSW---TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
........+|..+...+.+.|.++.|...+..+...+... .+...-.-+..+-..|+..+|...++.....
T Consensus 140 -~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 140 -LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred -cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2223456678889999999999999999999988754222 3444555567777889999999999888763
No 315
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.91 E-value=8.8 Score=30.74 Aligned_cols=84 Identities=6% Similarity=-0.037 Sum_probs=47.4
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHccCChHHHHHHHHH-----HHhcCCCCCH
Q 018876 235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV-----MQQRGCKPDK 308 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~p~~ 308 (349)
.++..+...++..++..+++....++++..... ++.-|...|..+|+.....|+..-..++.++ +.+.|+..+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~ 278 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTD 278 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCH
Confidence 455566666666666666666666666655443 4445666666666666666666655555543 2233444444
Q ss_pred HHHHHHHHHH
Q 018876 309 VTYRTMVRAY 318 (349)
Q Consensus 309 ~~~~~l~~~~ 318 (349)
..-..+-+.+
T Consensus 279 ~L~~~L~~LF 288 (292)
T PF13929_consen 279 ELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.90 E-value=0.2 Score=35.58 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=58.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++.... .-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence 35666677778888888888887666556677778888888888777777777662222 11234667777778
Q ss_pred ChHHHHHHHHHHHh
Q 018876 288 CFAEMKGVLEVMQQ 301 (349)
Q Consensus 288 ~~~~a~~~~~~~~~ 301 (349)
.++++.-++.++..
T Consensus 85 l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN 98 (143)
T ss_dssp SHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHccc
Confidence 88888777766543
No 317
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.85 E-value=6.8 Score=29.31 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=53.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876 210 IDAFGRAGDLKQMEYLFRLMRSERIKPS--CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
...+...+++++|..-++.........+ ..+-..|.+.....|.++.|+..++...+.+. .......-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 3445667777777777766553211100 11122344555667777777777776665543 3344445566677777
Q ss_pred ChHHHHHHHHHHHhcC
Q 018876 288 CFAEMKGVLEVMQQRG 303 (349)
Q Consensus 288 ~~~~a~~~~~~~~~~~ 303 (349)
+-++|..-|+.....+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 7777777777777664
No 318
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.26 E-value=8.9 Score=29.89 Aligned_cols=206 Identities=16% Similarity=0.123 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 018876 28 QSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA 107 (349)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (349)
..|..-..+|....++++|..-+.+..+-. ..|...|. -.+.++.|.-+.+++.+. +--...|+.....
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y--Ennrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 345555566777777777777666655421 12222221 122345555566666553 2233455666677
Q ss_pred HhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc---C--CCCCHHHHHHHHHHHHhcC
Q 018876 108 YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA---G--IQPSINTFNILLDSYGKAG 182 (349)
Q Consensus 108 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~ 182 (349)
|..+|..+.|-..+++.-+. ....++++|+++|++.... + ...-...+...-+.+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 77777776666665554321 1233445555555543321 1 0111223344445566666
Q ss_pred CHHHHHHHHHHHHhcC----CCCc-hHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCcHHHHHHHHHHHHhcCCh
Q 018876 183 HFEKMSAVMEYMQKYH----YSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLMRSE---RIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 183 ~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.+++|-..+.+-.... --++ -..|-..|-.+.-..++..|...++.--+. .-+-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 6666655554322110 0011 122334444445556677777777653322 1123445555666555 34566
Q ss_pred hhHHHHH
Q 018876 255 EKLGSVL 261 (349)
Q Consensus 255 ~~a~~~~ 261 (349)
+++..++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 5555544
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.18 E-value=7.7 Score=29.03 Aligned_cols=131 Identities=15% Similarity=0.023 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHH--HHHHHHHHhcCChhhHHHHHHHHhhCCCC--chHHHHHHH
Q 018876 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTL--CSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LDTVFFNCL 279 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 279 (349)
..|..++.... .+.. +.......+...........+ ..+...+...++++.|..-++........ ....+--.|
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 34444444432 3333 445555555543312222222 23456788999999999999877654211 112233346
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhH
Q 018876 280 VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMD 338 (349)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 338 (349)
.+.....|.+++|+.+++.....+. .......-.+.+...|+.++|+..|+...++.
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 6778889999999999988776643 33334455668999999999999999887774
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.99 E-value=4.8 Score=26.40 Aligned_cols=45 Identities=9% Similarity=0.220 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018876 152 MEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
..+-++.+......|++.+..+.+++|.+.+++..|.++|+-++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444445555666666666666666666666666655543
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.94 E-value=0.2 Score=35.62 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=43.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 018876 139 TLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD 218 (349)
Q Consensus 139 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (349)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+....+++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34455556666666666666665544445666666666666665555555555411 11222334444555555
Q ss_pred hHHHHHHHHH
Q 018876 219 LKQMEYLFRL 228 (349)
Q Consensus 219 ~~~a~~~~~~ 228 (349)
++++..++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 322
>PRK09687 putative lyase; Provisional
Probab=88.59 E-value=12 Score=30.34 Aligned_cols=235 Identities=12% Similarity=-0.001 Sum_probs=133.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCch----HHHHHHHHHHhccCCCcchhh
Q 018876 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMF----AEMELTLVKMLSEDCEPDVWT 135 (349)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 135 (349)
.+|.......+.++...|. +.+...+..+... +|...-...+.++...|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3566666666666666665 3344444444433 3555555566666666652 4566666666433 344444
Q ss_pred HHHHHHHHHccCCH-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 018876 136 MNCTLRAFGNSGQI-----DTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVI 210 (349)
Q Consensus 136 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (349)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 44555555544321 223333333322 3355666677777777776 4455555555543 3445555556
Q ss_pred HHHHhcC-ChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCCh
Q 018876 211 DAFGRAG-DLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCF 289 (349)
Q Consensus 211 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 289 (349)
.++.+.+ +.+.+...+..+.. .++..+-...+.++.+.++.. +...+-...+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKR-VLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChh-HHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 6666543 24456666666553 456667777788888888754 444444444432 2 234577788888885
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018876 290 AEMKGVLEVMQQRGCKPDKVTYRTMVRAYS 319 (349)
Q Consensus 290 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 319 (349)
+|...+..+.+. .||..+-...+.+|.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 688888887764 347766666666554
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.46 E-value=1.4 Score=23.83 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=13.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHhc
Q 018876 279 LVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.06 E-value=0.42 Score=23.46 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=12.0
Q ss_pred HHHHHHcCCChhHHHHHHHHhhcC
Q 018876 33 LLSAYGRSGLFDKAFSLLEHMKNT 56 (349)
Q Consensus 33 l~~~~~~~~~~~~a~~~~~~~~~~ 56 (349)
+..++.+.|++++|.+.|+.+.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344444455555555555555443
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.04 E-value=5.7 Score=30.31 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=22.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHH
Q 018876 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122 (349)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 122 (349)
++.+.+.+..++++...++-.+.. +-|..+-..++..++-.|+|++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 344444444455444444443332 2233344444444555555555444333
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.97 E-value=5.5 Score=30.38 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCchHHHHHHHHH
Q 018876 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG--IRPNTVTYNTLIDA 107 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 107 (349)
.+..++.+.+.+.+++++...+.-.+.. +.|...-..+++.++-.|++++|..-++-.-... ..+-..+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667778888888888887666552 4566667778888888999998887766655431 23345566666654
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.87 E-value=1.2 Score=21.71 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=13.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHhc
Q 018876 279 LVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444455555666666666555544
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.74 E-value=2 Score=21.19 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.+|..+...|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677788888888888888888887764
No 329
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.24 E-value=12 Score=29.88 Aligned_cols=87 Identities=10% Similarity=0.147 Sum_probs=44.3
Q ss_pred HHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----
Q 018876 105 IDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYG----- 179 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 179 (349)
|.+++..++|.+++...-+..+.--+........-|-.|.+.+++..+.++-..-.+..-.-+..-|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 456666666666666555444332122233344445556666666666665555444322222333555544443
Q ss_pred hcCCHHHHHHHH
Q 018876 180 KAGHFEKMSAVM 191 (349)
Q Consensus 180 ~~~~~~~a~~~~ 191 (349)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666655
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.00 E-value=1.1 Score=20.77 Aligned_cols=18 Identities=22% Similarity=0.004 Sum_probs=7.9
Q ss_pred HHHHHHccCChHHHHHHH
Q 018876 279 LVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~ 296 (349)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444443
No 331
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.32 E-value=5.1 Score=32.79 Aligned_cols=48 Identities=19% Similarity=0.032 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLE 51 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 51 (349)
.++|.+++|++.|..-.... +.|+..+..-..+|.+..++..|..-.+
T Consensus 108 FKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 34455555555554444331 2244444444444444444444443333
No 332
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.77 E-value=6.4 Score=24.41 Aligned_cols=47 Identities=6% Similarity=-0.067 Sum_probs=27.4
Q ss_pred ccCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCchhhhHHHH
Q 018876 285 RLKCFAEMKGVLEVMQQRGCKPD--KVTYRTMVRAYSTNGMKNHAKEFQ 331 (349)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 331 (349)
..++.++|+..|....+.-..|. -.++..++.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777766665533222 244556666777777766666543
No 333
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.77 E-value=25 Score=31.29 Aligned_cols=312 Identities=11% Similarity=0.032 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHhcCCCCchh-hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-hcCChhHHHHHH
Q 018876 9 EKAHELFQAMVDEGCDANTQ-SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCL-KAFAFDKVQALL 86 (349)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~ 86 (349)
+.+..+++.+... -|-.. -|......=.+.|..+.+.++|++... +++-+...|...+..+. ..|+.+.....|
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3344445555433 23222 344445555566777777778777765 33455555555444333 346666666777
Q ss_pred HHHHhC-CCC-CchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHc-----cCCHHHHHHHHHHH
Q 018876 87 SDMSTQ-GIR-PNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGN-----SGQIDTMEKCYEKF 159 (349)
Q Consensus 87 ~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~ 159 (349)
+..... |.. .+...|...+..-..++++.....++++.++....-=...|......... ....+++.++-...
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 766554 321 24456666776666777777777777777643211111111111111111 11122222221111
Q ss_pred Hh--------------------cCCCCCHH--HHHHHH-------HHHHhcCCHHHHHHHHHHHHhcC---C----CCch
Q 018876 160 QS--------------------AGIQPSIN--TFNILL-------DSYGKAGHFEKMSAVMEYMQKYH---Y----SWTI 203 (349)
Q Consensus 160 ~~--------------------~~~~~~~~--~~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~---~----~~~~ 203 (349)
.. .+.+.+.. ..+.+- ..+...-...+....++.-.+.. + .++.
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 10 00000000 000110 11111112222222222222211 1 2245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--chHHHHHHHHH
Q 018876 204 VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIM--LDTVFFNCLVD 281 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~ 281 (349)
.+|+.-+..-...|+.+.+.-+++...-- +..-...|-..+.-....|+.+-|..++....+.-.+ |....+.+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f- 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF- 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH-
Confidence 67777788788888888888888776521 1122344555555555668888888777766554332 2333333222
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCchhhhHH
Q 018876 282 AYGRLKCFAEMKGVLEVMQQRGCKPDKV-TYRTMVRAYSTNGMKNHAKE 329 (349)
Q Consensus 282 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 329 (349)
.-..|++..|..+++.+...- |+.. .-..-+....+.|+.+.+..
T Consensus 376 -~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 376 -EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred -HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH
Confidence 234678999999999888763 4432 22233444566777777663
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.31 E-value=8.7 Score=31.54 Aligned_cols=54 Identities=15% Similarity=-0.015 Sum_probs=29.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018876 176 DSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
+.|.++|.+++|+..|.......+ -+++++..-..+|.+...+..|+.=....+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 345666666666666655544331 155555555566666665555554444443
No 335
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.81 E-value=32 Score=31.62 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=36.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhc--
Q 018876 175 LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER-IKPSCVTLCSLVRAYGHA-- 251 (349)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-- 251 (349)
...+.-.|+++.|++.+-. ......+.+++...+..+.-.+-.+... ..+.... -.|...-+..+|..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455677888888888766 1222335555555444433221111111 2222111 011124566677777653
Q ss_pred -CChhhHHHHHHHHhhC
Q 018876 252 -GKPEKLGSVLRFIDNS 267 (349)
Q Consensus 252 -~~~~~a~~~~~~~~~~ 267 (349)
.++..|.+.+-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 4566677766655543
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.59 E-value=22 Score=31.83 Aligned_cols=101 Identities=22% Similarity=0.141 Sum_probs=64.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhH
Q 018876 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKL 257 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 257 (349)
..+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 346677777777655432 566788888888888888888888876543 34555566667776655
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHH
Q 018876 258 GSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVM 299 (349)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 299 (349)
..+-....+.|. . |...-+|...|+++++.+++..-
T Consensus 712 ~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 555555555543 1 22334566778888887776543
No 337
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.44 E-value=19 Score=28.76 Aligned_cols=91 Identities=11% Similarity=0.097 Sum_probs=64.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-
Q 018876 136 MNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFG- 214 (349)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 214 (349)
...=|.+++..+++.+++...-+--+.--+....+...-|-.|.+.+++..+.++-.......-.-+...|..++..|.
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3445788899999999887765554432233445556666778999999999998887765533334555777766654
Q ss_pred ----hcCChHHHHHHH
Q 018876 215 ----RAGDLKQMEYLF 226 (349)
Q Consensus 215 ----~~~~~~~a~~~~ 226 (349)
-.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 469999999887
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.04 E-value=15 Score=27.20 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=5.0
Q ss_pred CCCHHHHHHHHHH
Q 018876 305 KPDKVTYRTMVRA 317 (349)
Q Consensus 305 ~p~~~~~~~l~~~ 317 (349)
.|+..+|+.-+..
T Consensus 110 ~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 110 DPNNELYRKSLEM 122 (186)
T ss_dssp -TT-HHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 3444444444443
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.85 E-value=3.3 Score=22.34 Aligned_cols=16 Identities=13% Similarity=0.339 Sum_probs=5.8
Q ss_pred HHccCCHHHHHHHHHH
Q 018876 143 FGNSGQIDTMEKCYEK 158 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~ 158 (349)
|...|+.+.|.+++++
T Consensus 9 yie~Gd~e~Ar~lL~e 24 (44)
T TIGR03504 9 YIEMGDLEGARELLEE 24 (44)
T ss_pred HHHcCChHHHHHHHHH
Confidence 3333333333333333
No 340
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.78 E-value=65 Score=34.34 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=73.8
Q ss_pred CCCChHHHHHHHHHHHhcCC--CCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876 4 KCKQPEKAHELFQAMVDEGC--DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
+++.+.+|...++.-..... .....-+..+...|+.-++++...-+...-.. .|+. + .-+......|+++.
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl--~-~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSL--Y-QQILEHEASGNWAD 1467 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccH--H-HHHHHHHhhccHHH
Confidence 34555666666665210000 01122233333467777777766665543111 1222 2 22334556778888
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhH-HHHHHHHHccCCHHHHHHHHH
Q 018876 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTM-NCTLRAFGNSGQIDTMEKCYE 157 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~ 157 (349)
|...|+.+...+ ++...+++.++......+.++.+....+-..... .+....+ +.-+.+--+.++++.....+.
T Consensus 1468 a~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 888888887764 3346667777766666677766665544443332 2222222 222333345666666555544
No 341
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.20 E-value=12 Score=25.68 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=19.1
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876 261 LRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
++.+...++.|++.....-++++-+-+++..|.++|+-++.
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33333444444444444444455455555555544444443
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.01 E-value=32 Score=30.25 Aligned_cols=164 Identities=14% Similarity=0.142 Sum_probs=78.6
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 018876 132 DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVID 211 (349)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 211 (349)
|.....+++..+..+-...-++.+..+|...| -+...|..++.+|..+ ..+.-..+++++.+..+. |+..-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33344455555555555555555555555543 2445555555555555 445555555555555443 3444444444
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-----cHHHHHHHHHHHHhcCChhhHHHHHHHHhh-CCCCchHHHHHHHHHHHHc
Q 018876 212 AFGRAGDLKQMEYLFRLMRSERIKP-----SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN-SDIMLDTVFFNCLVDAYGR 285 (349)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 285 (349)
.|-+ ++.+.+..+|.++...-++. -...|..+.... ..+.+....+...+.. .|...-...+.-+-..|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4433 55555555555554321110 011233322211 2344444444444432 2222233445555556666
Q ss_pred cCChHHHHHHHHHHHhc
Q 018876 286 LKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 286 ~g~~~~a~~~~~~~~~~ 302 (349)
..++.+|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 66666666666655554
No 343
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=82.57 E-value=12 Score=24.90 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=44.0
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHH
Q 018876 40 SGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMEL 119 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 119 (349)
....++|..+.+.+...++ ....+--+.+..+.+.|++++| + ..- .....||...|-.|- -.+.|--+++..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A--L-l~~-~~~~~pdL~p~~AL~--a~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA--L-LLP-QCHCYPDLEPWAALC--AWKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH--H-HHH-TTS--GGGHHHHHHH--HHHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH--H-Hhc-ccCCCccHHHHHHHH--HHhhccHHHHHH
Confidence 3456677777777766531 2223333344566677777777 1 111 122356666665443 335666667777
Q ss_pred HHHHHhccCCCcchhhH
Q 018876 120 TLVKMLSEDCEPDVWTM 136 (349)
Q Consensus 120 ~~~~~~~~~~~~~~~~~ 136 (349)
.+.++..+| .|....|
T Consensus 91 ~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 91 RLTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHHCT-S-SHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 776666555 4433333
No 344
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.57 E-value=16 Score=25.92 Aligned_cols=50 Identities=8% Similarity=0.087 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHhccCc-hHHHHHHHHHHhccCCCcchhhHHHHHHHHHcc
Q 018876 97 NTVTYNTLIDAYGRAKM-FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNS 146 (349)
Q Consensus 97 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (349)
+...|+.++.+..+... --.+..+|.-+.+.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34455555555544433 223444444444444455555555555555443
No 345
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=81.30 E-value=5.3 Score=23.50 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHccCchhhhHHHHHHHH
Q 018876 307 DKVTYRTMVRAYSTNGMKNHAKEFQDLVE 335 (349)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 335 (349)
|..-.-.+|.+|...|++++|.++++.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444455666666666666666555443
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.27 E-value=27 Score=28.20 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=44.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhcc
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAM 344 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 344 (349)
+++.....|..+|.+.+|.++-+.....+ +.+...+..++..+...|+--.+.+-++.+.+.-+.-++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi 349 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGI 349 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCC
Confidence 44555566777777777777777766653 2356667777777777777666766666666554444443
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.06 E-value=45 Score=30.66 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=105.1
Q ss_pred HHHHHHHHHH-hcCCCCc--hhhHHHHHHHHH-cCCChhHHHHHHHHhhcCCCCCCCHH-----HHHHHHHHHHhcCChh
Q 018876 10 KAHELFQAMV-DEGCDAN--TQSFTALLSAYG-RSGLFDKAFSLLEHMKNTPDCQPDVN-----TYSILIKSCLKAFAFD 80 (349)
Q Consensus 10 ~A~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~ 80 (349)
.|++.++.+. +...+|. ..++-.+...+. ...+++.|...+++...... .++.. +-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4566666666 3334443 334555666655 77899999999998754422 22221 2234455555555544
Q ss_pred HHHHHHHHHHhC----CCCCchHHHHHH-HHHHhccCchHHHHHHHHHHhccC---CCcchhhHHHHHHHHH--ccCCHH
Q 018876 81 KVQALLSDMSTQ----GIRPNTVTYNTL-IDAYGRAKMFAEMELTLVKMLSED---CEPDVWTMNCTLRAFG--NSGQID 150 (349)
Q Consensus 81 ~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~ 150 (349)
|...+++.++. +..+-...|..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888886654 122223334444 333334478999999888876542 2444455555555443 455566
Q ss_pred HHHHHHHHHHhcC---------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 018876 151 TMEKCYEKFQSAG---------IQPSINTFNILLDSYG--KAGHFEKMSAVMEYM 194 (349)
Q Consensus 151 ~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 194 (349)
++.+.++.+.... ..|...+|..+++.++ ..|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777776664322 1345666766666554 567766766665554
No 348
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.85 E-value=13 Score=24.35 Aligned_cols=78 Identities=12% Similarity=0.153 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHH
Q 018876 43 FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLV 122 (349)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 122 (349)
.++|..+-+.+...+ .....+--+-+..+.+.|++++|..+.+.+ ..||...|-.|-.. +.|..+++...+.
T Consensus 21 HqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 455555555555431 112222222334555666666666555444 24555555444322 4455555555555
Q ss_pred HHhccC
Q 018876 123 KMLSED 128 (349)
Q Consensus 123 ~~~~~~ 128 (349)
++..+|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 555554
No 349
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.54 E-value=13 Score=28.03 Aligned_cols=33 Identities=15% Similarity=-0.007 Sum_probs=23.8
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 270 MLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 270 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.|++.+|..++.++...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467777777777777777777777777777654
No 350
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.14 E-value=3.5 Score=19.15 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=14.9
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018876 29 SFTALLSAYGRSGLFDKAFSLLEHMKN 55 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 55 (349)
.|..+...+...|+++.|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344455555555666666666555543
No 351
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.94 E-value=22 Score=31.84 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=76.7
Q ss_pred HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCc
Q 018876 34 LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKM 113 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (349)
.....+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+
T Consensus 644 Felal~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~ 707 (794)
T KOG0276|consen 644 FELALKLGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGN 707 (794)
T ss_pred hhhhhhcCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCC
Confidence 34456789999998887554 3567799999999999999999999877654 4466667777888
Q ss_pred hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018876 114 FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
-+....+-....+.| +. |...-+|...|+++++.+++..-
T Consensus 708 ~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 708 AEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 776666666666666 32 33445667789999988877543
No 352
>PF13934 ELYS: Nuclear pore complex assembly
Probab=79.49 E-value=27 Score=27.17 Aligned_cols=103 Identities=13% Similarity=0.035 Sum_probs=60.0
Q ss_pred HHHHHHH--HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 018876 30 FTALLSA--YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDA 107 (349)
Q Consensus 30 ~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (349)
|...+++ +...+++++|.+.+-.- .+.|+-. .-++.++...|+.+.|..++....-.. .+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP----SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC----CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH
Confidence 4555555 34567788888877322 2223322 236777777899998888887654321 122333333444
Q ss_pred HhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Q 018876 108 YGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFG 144 (349)
Q Consensus 108 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (349)
..++.+.+|...-+...+.. ....+..++..+.
T Consensus 151 -La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 56688888888777766532 1344555555554
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.47 E-value=23 Score=26.27 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHhcCCCCchhhHHHHHHH---HHcCCC-------hhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhc
Q 018876 8 PEKAHELFQAMVDEGCDANTQSFTALLSA---YGRSGL-------FDKAFSLLEHMKNTPDCQPD-VNTYSILIKSCLKA 76 (349)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 76 (349)
++.|.+..+.-...+ |.|...++.-..+ +++... +++|+.-|++.... .|+ ..++..+..++...
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I---~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI---NPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHH
Confidence 456666666655443 4555554433333 333333 33445555555544 344 34555555555442
Q ss_pred C----C-------hhHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 018876 77 F----A-------FDKVQALLSDMSTQGIRPNTVTYNTLIDAYG 109 (349)
Q Consensus 77 ~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (349)
+ + +++|...|++.... .|+..+|+.-+....
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA 124 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 2 2 34455555555544 677777777666653
No 354
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=79.36 E-value=8.4 Score=21.22 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=21.2
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 316 (349)
..+.|-..++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445556666667777776676666666665554
No 355
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.25 E-value=34 Score=29.47 Aligned_cols=209 Identities=14% Similarity=0.128 Sum_probs=101.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCchHH--HHHHHHHHhccCchHHHHHHHHHHhccCCCcchh--hHHHHHHHHHc
Q 018876 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVT--YNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVW--TMNCTLRAFGN 145 (349)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 145 (349)
+...+..|+.+-+..+ .+.|..|+... ....+...+..|+.+-+. .+.+.|..|+.. .....+...+.
T Consensus 6 L~~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHH
Confidence 3445566777655444 45677766533 234455556677775443 344445444432 12234555667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH---HHHHHHHHHHhcCC
Q 018876 146 SGQIDTMEKCYEKFQSAGIQPS----INTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIV---TYNIVIDAFGRAGD 218 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 218 (349)
.|+.+.+..+++ .|...+ ..-. +.+...+..|+.+-+ +.+.+.|..|+.. ..+ .+...+..|+
T Consensus 78 ~g~~~~v~~Ll~----~~~~~~~~~~~~g~-tpL~~A~~~~~~~iv----~~Ll~~gad~~~~~~~g~t-pLh~A~~~~~ 147 (413)
T PHA02875 78 EGDVKAVEELLD----LGKFADDVFYKDGM-TPLHLATILKKLDIM----KLLIARGADPDIPNTDKFS-PLHLAVMMGD 147 (413)
T ss_pred CCCHHHHHHHHH----cCCcccccccCCCC-CHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCC-HHHHHHHcCC
Confidence 788876555543 332211 1112 233444566776544 4444555544322 222 3344456777
Q ss_pred hHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHH---HHHHHHHHHccCChHHH
Q 018876 219 LKQMEYLFRLMRSERIKPS---CVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVF---FNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a 292 (349)
.+-+..+++ .|..++ ..-.+.+. ..+..|+.+-+ +.+.+.|..++... ....+...+..|+.+
T Consensus 148 ~~~v~~Ll~----~g~~~~~~d~~g~TpL~-~A~~~g~~eiv----~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~-- 216 (413)
T PHA02875 148 IKGIELLID----HKACLDIEDCCGCTPLI-IAMAKGDIAIC----KMLLDSGANIDYFGKNGCVAALCYAIENNKID-- 216 (413)
T ss_pred HHHHHHHHh----cCCCCCCCCCCCCCHHH-HHHHcCCHHHH----HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH--
Confidence 665555543 343322 22223333 34455665543 44444554443221 123444344556544
Q ss_pred HHHHHHHHhcCCCCCHH
Q 018876 293 KGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 293 ~~~~~~~~~~~~~p~~~ 309 (349)
+.+.+.+.|..++..
T Consensus 217 --iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 217 --IVRLFIKRGADCNIM 231 (413)
T ss_pred --HHHHHHHCCcCcchH
Confidence 455566778777653
No 356
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.11 E-value=18 Score=24.90 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018876 154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
+-++.+....+.|++.....-++++.+.+|+..|.++|+-++.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444445555666666666666666666666666666666554
No 357
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=78.93 E-value=22 Score=26.45 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=11.8
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 018876 71 KSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~ 91 (349)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555566666655555554
No 358
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=78.79 E-value=5.9 Score=23.30 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhh
Q 018876 8 PEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMK 54 (349)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 54 (349)
++...++++.+... +.|-.-.-.++.++...|++++|.+..+.+.
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444444332 2344444455566666666666666555554
No 359
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.18 E-value=12 Score=28.18 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=22.7
Q ss_pred CCchHHHHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876 95 RPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
.|+..+|..++.++...|+.++|.+..+++..-
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777777777777777777777776666543
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.12 E-value=10 Score=23.60 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=26.5
Q ss_pred hcCChhhHHHHHHHHhhCCCCch--HHHHHHHHHHHHccCChHHHHHH
Q 018876 250 HAGKPEKLGSVLRFIDNSDIMLD--TVFFNCLVDAYGRLKCFAEMKGV 295 (349)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~ 295 (349)
..++.++|+..|....+.-..+. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655433222 23455666677777777666554
No 361
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.58 E-value=19 Score=23.69 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=23.2
Q ss_pred HHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 018876 107 AYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG 163 (349)
Q Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (349)
.+...|++++|..+.+.+ ..||...|..+.. .+.|-.+++..-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344455555555544433 2444444443322 24444444444444444444
No 362
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=76.47 E-value=11 Score=20.82 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=21.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 018876 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLID 106 (349)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 106 (349)
..+.|-..++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666666777766666666666665553
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.42 E-value=20 Score=31.96 Aligned_cols=90 Identities=14% Similarity=0.019 Sum_probs=60.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHH
Q 018876 213 FGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEM 292 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 292 (349)
+...|+...|...+.........-.......+.....+.|-...|-.++....... ...+.++..+..+|....+.+.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34567777888877766543222222334455666666777777877777766554 23556777788888888999999
Q ss_pred HHHHHHHHhcC
Q 018876 293 KGVLEVMQQRG 303 (349)
Q Consensus 293 ~~~~~~~~~~~ 303 (349)
++.|++..+..
T Consensus 696 ~~~~~~a~~~~ 706 (886)
T KOG4507|consen 696 LEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHhcC
Confidence 99998888764
No 364
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=75.38 E-value=26 Score=25.03 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=32.6
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 018876 192 EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (349)
..+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3444555543322 334455555555556666777666666555555555555555555553
No 365
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.31 E-value=12 Score=24.16 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=12.3
Q ss_pred HHHHHcCCChhHHHHHHHHhhc
Q 018876 34 LSAYGRSGLFDKAFSLLEHMKN 55 (349)
Q Consensus 34 ~~~~~~~~~~~~a~~~~~~~~~ 55 (349)
.......|++++|...+++..+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555666666666665543
No 366
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.24 E-value=27 Score=24.88 Aligned_cols=81 Identities=12% Similarity=0.230 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCcHHHHHHH
Q 018876 171 FNILLDSYGKAGHFEKMSAVMEYMQKYHY-----SWTIVTYNIVIDAFGRAGD-LKQMEYLFRLMRSERIKPSCVTLCSL 244 (349)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (349)
.+.++......+++.....+++.+..... ..+...|++++.+..+..- --.+..+|.-+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555556666666666665532110 2245566677766654444 33455666666665666677777777
Q ss_pred HHHHHhc
Q 018876 245 VRAYGHA 251 (349)
Q Consensus 245 ~~~~~~~ 251 (349)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766554
No 367
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.61 E-value=56 Score=28.20 Aligned_cols=212 Identities=12% Similarity=0.022 Sum_probs=104.9
Q ss_pred HHHHcCCChhHHHHHHHHhhcCCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchH--HHHHHHHHHhc
Q 018876 35 SAYGRSGLFDKAFSLLEHMKNTPDCQPDVNT--YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTV--TYNTLIDAYGR 110 (349)
Q Consensus 35 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 110 (349)
...+..|+.+-+..+++ . |..|+... ..+.+..++..|+.+-+ +.+.+.|..|+.. .....+...+.
T Consensus 7 ~~A~~~g~~~iv~~Ll~----~-g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 7 CDAILFGELDIARRLLD----I-GINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHhCCHHHHHHHHH----C-CCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHH
Confidence 34456788776666654 2 33454322 33455666777887644 4445666655432 12234555667
Q ss_pred cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHH
Q 018876 111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINT--FNILLDSYGKAGHFEKMS 188 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~ 188 (349)
.|+.+.+..+++.-.......+..- .+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+.
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred CCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 7888776665543221110111111 22334445566654 4555566676554321 123344556778876655
Q ss_pred HHHHHHHhcCCCC---chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHH---HHHHHHHHHhcCChhhHHHHHH
Q 018876 189 AVMEYMQKYHYSW---TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVT---LCSLVRAYGHAGKPEKLGSVLR 262 (349)
Q Consensus 189 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~ 262 (349)
.+++ .|..+ +....+.+. ..+..|+.+-+ +.+.+.|..++... ..+.+...+..|+.+ +.+
T Consensus 153 ~Ll~----~g~~~~~~d~~g~TpL~-~A~~~g~~eiv----~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~ 219 (413)
T PHA02875 153 LLID----HKACLDIEDCCGCTPLI-IAMAKGDIAIC----KMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVR 219 (413)
T ss_pred HHHh----cCCCCCCCCCCCCCHHH-HHHHcCCHHHH----HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHH
Confidence 5543 44332 223333333 33455665544 44445555554321 123444344556654 445
Q ss_pred HHhhCCCCchH
Q 018876 263 FIDNSDIMLDT 273 (349)
Q Consensus 263 ~~~~~~~~~~~ 273 (349)
.+.+.|..++.
T Consensus 220 ~Ll~~gad~n~ 230 (413)
T PHA02875 220 LFIKRGADCNI 230 (413)
T ss_pred HHHHCCcCcch
Confidence 55566766653
No 368
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.49 E-value=10 Score=30.65 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHH
Q 018876 274 VFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYR 312 (349)
Q Consensus 274 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 312 (349)
..|+.-|..-.+.||+++|+.++++..+.|+.--..+|-
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 345678888888888888888888888888764444443
No 369
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.45 E-value=84 Score=30.18 Aligned_cols=187 Identities=11% Similarity=0.066 Sum_probs=102.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCchHHHH--
Q 018876 135 TMNCTLRAFGNSGQIDTMEKCYEKFQSAG---IQPSINTFNILLDSYGKAGHF--EKMSAVMEYMQKYHYSWTIVTYN-- 207 (349)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 207 (349)
-|..|+..|...|+.++|+++|.+..+.. -..-...+...+..+.+.+.. +-..+.-+-..+....-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47889999999999999999999987732 111112233345544444443 33333333332222111111111
Q ss_pred ----------HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC--------hhhHHHH-----HHHH
Q 018876 208 ----------IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK--------PEKLGSV-----LRFI 264 (349)
Q Consensus 208 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~-----~~~~ 264 (349)
..+-.|......+.+..+++.+....-.++....+.++..|++.=+ -+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 1122345666777888888888776656677777777776664322 1122222 1111
Q ss_pred hh--CCCC--------chHHHHHHHHHHHHccCChHHHHHHHHHHHhc-------------CCCCCHHHHHHHHHHHHcc
Q 018876 265 DN--SDIM--------LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-------------GCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 265 ~~--~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------~~~p~~~~~~~l~~~~~~~ 321 (349)
.+ .... +....|....-.+.+.|+.++|+.++-..... ...++...|..++..|...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 11 1111 12334444444455888889998877655431 1344778888888888776
No 370
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.28 E-value=55 Score=27.16 Aligned_cols=98 Identities=8% Similarity=-0.078 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 018876 165 QPSINTFNILLDSYGKAGH------------FEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE 232 (349)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (349)
+-|..+|-.++..--..-. .+.-+.+++++.+.++ -+...+-.++..+.+..+.++..+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4467777777654322211 2344455666555543 35555666666666666666666666666654
Q ss_pred CCCCcHHHHHHHHHHHHh---cCChhhHHHHHHHH
Q 018876 233 RIKPSCVTLCSLVRAYGH---AGKPEKLGSVLRFI 264 (349)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 264 (349)
. +-+...|...+..... .-.++....+|...
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 3 2345556555554443 22345555555443
No 371
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.10 E-value=68 Score=28.10 Aligned_cols=119 Identities=10% Similarity=0.111 Sum_probs=71.8
Q ss_pred CCChHHHHH-HHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 018876 5 CKQPEKAHE-LFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 5 ~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 83 (349)
.|++..|-+ +++-+... +.++.........+...|+++.+...+......- .....+...+++...+.++++.|.
T Consensus 302 ~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~--~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII--GTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh--cCCchHHHHHHHhhhchhhHHHHH
Confidence 345444433 44444433 2233333333344567788888888876665432 345567777888888888888888
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccC
Q 018876 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
.+-.-|....+. +........-..-..|-++++...|+++....
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888888776554 44433333333334566788888888776543
No 372
>PRK10941 hypothetical protein; Provisional
Probab=72.04 E-value=29 Score=27.83 Aligned_cols=78 Identities=13% Similarity=-0.060 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCchHHHHHHHHHH
Q 018876 30 FTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG-IRPNTVTYNTLIDAY 108 (349)
Q Consensus 30 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 108 (349)
.+.+-.+|.+.++++.|+...+.+.... +.+..-+.--.-.+.+.|.+..|..-++...+.- -.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 4566677899999999999999998764 4566667777778999999999999888887652 345555555555544
Q ss_pred h
Q 018876 109 G 109 (349)
Q Consensus 109 ~ 109 (349)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 3
No 373
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.84 E-value=94 Score=29.59 Aligned_cols=197 Identities=15% Similarity=0.080 Sum_probs=98.7
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCC----HH---HHHHHH-HHHHhcCCHHHHHHHHHHHHhc----CCCCchHHHHHHH
Q 018876 143 FGNSGQIDTMEKCYEKFQSAGIQPS----IN---TFNILL-DSYGKAGHFEKMSAVMEYMQKY----HYSWTIVTYNIVI 210 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~---~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 210 (349)
.....++.+|..++.++...-..|+ .. .++.+- ......|+++.|.++-+..... ...+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456778888888877655422221 11 222221 1234567888888877766543 2334566677777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcH---HHHHHH--HHHHHhcCChh--hHHHHHHHHhhC-----CC-CchHHHHH
Q 018876 211 DAFGRAGDLKQMEYLFRLMRSERIKPSC---VTLCSL--VRAYGHAGKPE--KLGSVLRFIDNS-----DI-MLDTVFFN 277 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l--~~~~~~~~~~~--~a~~~~~~~~~~-----~~-~~~~~~~~ 277 (349)
.+..-.|++++|..+.+...+..-.-+. ..|..+ ...+...|... +....+...... .. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777888888888887766543212222 222222 23345566322 222233222211 00 11233444
Q ss_pred HHHHHHHcc-CChHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHccCchhhhHHHHHHHHHhHH
Q 018876 278 CLVDAYGRL-KCFAEMKGVLEVMQQRGCKPDKVTY--RTMVRAYSTNGMKNHAKEFQDLVEKMDE 339 (349)
Q Consensus 278 ~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (349)
.+..++.+. +...++..-++--......|-.... ..+.......|+.+.|...++.+...-.
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 555555441 1122222222222222222222222 2556677778888888887777766544
No 374
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=71.72 E-value=48 Score=30.30 Aligned_cols=91 Identities=16% Similarity=0.190 Sum_probs=58.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHhCCCCCchHHHHHH
Q 018876 32 ALLSAYGRSGLFDKAFSLLEHMKNTPD-CQPDVNTYSILIKSCLKAFAFD------KVQALLSDMSTQGIRPNTVTYNTL 104 (349)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 104 (349)
+|+.+|..+|++.++.++++.+...+. -+--...||..++...+.|.++ .+.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 788999999999999999988876421 1223456788888888888764 3444444443 44577788877
Q ss_pred HHHHhccCchHHHHHHHHHHh
Q 018876 105 IDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~ 125 (349)
+.+-...-+-.-..-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776655333333333344333
No 375
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.68 E-value=28 Score=27.52 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=51.0
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCchHHHHHHHHHHhccCchHHHH
Q 018876 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ----G-IRPNTVTYNTLIDAYGRAKMFAEME 118 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~ 118 (349)
+.|.+.|...... .--......+..-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+...
T Consensus 162 ~~A~~~f~~~~~~---R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 162 EKAYEQFKKYGQN---RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHhccc---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3555555554432 233344445677788888888888888877432 3 2445666777788888888888777
Q ss_pred HHHHHHh
Q 018876 119 LTLVKML 125 (349)
Q Consensus 119 ~~~~~~~ 125 (349)
.+.-++.
T Consensus 239 ~~~leLl 245 (247)
T PF11817_consen 239 TTSLELL 245 (247)
T ss_pred HHHHHHh
Confidence 7655543
No 376
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=71.06 E-value=56 Score=26.68 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=9.1
Q ss_pred HHHHHHHHHHccCChHH
Q 018876 275 FFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~ 291 (349)
.|..|+.+++..|+.+.
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45555555555555443
No 377
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.88 E-value=75 Score=28.98 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018876 285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVR 316 (349)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 316 (349)
+.|++.+|.+.+-.+...+..|...-...|.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 34777778777777777766666554444444
No 378
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=70.47 E-value=16 Score=29.52 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=32.8
Q ss_pred CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHH
Q 018876 59 CQPDVNT-YSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYN 102 (349)
Q Consensus 59 ~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (349)
+.|+..+ |+..|....+.||+++|++++++..+.|..--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3455555 5688888899999999999999999888764444443
No 379
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=70.40 E-value=48 Score=25.63 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=105.0
Q ss_pred CChhHHHHHHHHHHhCCCCC-chHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHH
Q 018876 77 FAFDKVQALLSDMSTQGIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKC 155 (349)
Q Consensus 77 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 155 (349)
|-+.-|.--|.+.... .| -+.+||.|.--+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|+++-|.+=
T Consensus 79 GL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHH
Confidence 3444444444444443 33 356888888888999999999999999987753333333333333 3456888888877
Q ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 018876 156 YEKFQSAGI-QPSINTFNILLDSYGKAGHFEKMSAVM-EYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSER 233 (349)
Q Consensus 156 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (349)
+.+.-+... .|=...|-.+.. ..-++.+|..-+ ++.... |..-|...|-.+.- |++ ....+++++.+..
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKI-SEETLMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhc
Confidence 766655532 232333433332 334566666544 444332 33444333322211 211 1122333332211
Q ss_pred C------CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018876 234 I------KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 234 ~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 269 (349)
- ..-..||--+.+.+...|+.++|..+|+.....++
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 0 11247888899999999999999999999887654
No 380
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=69.99 E-value=32 Score=24.53 Aligned_cols=62 Identities=2% Similarity=-0.082 Sum_probs=30.7
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccC
Q 018876 225 LFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLK 287 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 287 (349)
+...+.+.|++++.. -..++..+...++.-.|..+++.+.+.++..+..|...-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444555555533 23345555555555666666666666554444443333333333333
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.88 E-value=43 Score=30.07 Aligned_cols=87 Identities=10% Similarity=-0.106 Sum_probs=44.8
Q ss_pred cCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018876 111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAV 190 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (349)
.|+...|...+...........-+....+.....+.|-...|..++.+..... ...+.++..+.+++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555554433222222233344444555555555666655554443 22344555556666666666666666
Q ss_pred HHHHHhcC
Q 018876 191 MEYMQKYH 198 (349)
Q Consensus 191 ~~~~~~~~ 198 (349)
|++..+..
T Consensus 699 ~~~a~~~~ 706 (886)
T KOG4507|consen 699 FRQALKLT 706 (886)
T ss_pred HHHHHhcC
Confidence 66665544
No 382
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.62 E-value=62 Score=26.22 Aligned_cols=28 Identities=0% Similarity=-0.029 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 018876 62 DVNTYSILIKSCLKAFAFDKVQALLSDM 89 (349)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 89 (349)
...++..+...|++.++.+.+.++..+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3445555556666666665555554443
No 383
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.18 E-value=63 Score=26.14 Aligned_cols=33 Identities=6% Similarity=0.067 Sum_probs=20.1
Q ss_pred HHHHHHHHccCChHHHHHHH----HHHHhcCCCCCHH
Q 018876 277 NCLVDAYGRLKCFAEMKGVL----EVMQQRGCKPDKV 309 (349)
Q Consensus 277 ~~li~~~~~~g~~~~a~~~~----~~~~~~~~~p~~~ 309 (349)
..++..+.+.|.+.+|+.+. .++.+.+-+|+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 34677788888888887654 3444444444443
No 384
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.80 E-value=29 Score=22.12 Aligned_cols=36 Identities=6% Similarity=0.056 Sum_probs=16.2
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchh
Q 018876 285 RLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKN 325 (349)
Q Consensus 285 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 325 (349)
..|+.+.|.+++..+. .| +..|..++.++...|..+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3445555555555554 32 223444444444444433
No 385
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=67.63 E-value=42 Score=26.60 Aligned_cols=62 Identities=10% Similarity=-0.044 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhcc----C-CCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 018876 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSE----D-CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQ 160 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (349)
..--.+...|.+.|++++|.++|+.+... | ..+...+...+..++...|+.+....+--++.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34445778899999999999999988532 3 24556777888889999999999887765554
No 386
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.42 E-value=7 Score=27.14 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018876 146 SGQIDTMEKCYEKFQSAGIQPSINTFNILLDS 177 (349)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (349)
.|.-..|..+|..|.+.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 35556788888888888887774 5666654
No 387
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.32 E-value=1.1e+02 Score=28.67 Aligned_cols=168 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHhccCchHHHHHHHHHHhccCCCc---chhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018876 105 IDAYGRAKMFAEMELTLVKMLSEDCEP---DVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKA 181 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (349)
++.+.+.+.+++|+...+... |..| -...+...+..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 018876 182 GHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL 261 (349)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 261 (349)
++... ++.-+.......++..|..++..+.. .....+++...+. +++...-..++.+.-..-+-.....-+
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~W--p~~Lys~l~iisa~~~q~~q~Se~~~L 507 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEW--PGHLYSVLTIISATEPQIKQNSESTAL 507 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhC--ChhhhhhhHHHhhcchHHHhhccchhH
Q ss_pred HHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876 262 RFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 262 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
.+. |+..|...+++..|..++-..++
T Consensus 508 ~e~--------------La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 508 LEV--------------LAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHH--------------HHHHHHHccChHHHHHHHHhccC
No 388
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.73 E-value=51 Score=24.60 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=22.1
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCc
Q 018876 280 VDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGM 323 (349)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 323 (349)
+-.|.+.|.+++|.+++++.... |+......-+....+.++
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 34566667777777766666652 344333444444444443
No 389
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=66.61 E-value=67 Score=29.48 Aligned_cols=90 Identities=16% Similarity=0.042 Sum_probs=53.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCChhh------HHHHHHHHhhCCCCchHHHHHHH
Q 018876 208 IVIDAFGRAGDLKQMEYLFRLMRSE--RIKPSCVTLCSLVRAYGHAGKPEK------LGSVLRFIDNSDIMLDTVFFNCL 279 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 279 (349)
.+..+|...|++..+..+++.+... |-..-...++..++.+.+.|.++- |...++... +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6788888888888888888887653 223334567777888888887552 233333332 33466777776
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 018876 280 VDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~~~ 300 (349)
+.+-..--.-....-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 665544333333333444443
No 390
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.54 E-value=92 Score=27.46 Aligned_cols=107 Identities=7% Similarity=-0.081 Sum_probs=60.4
Q ss_pred HHhcCChHHHHHHHHHHH---hCCCCCc-----HHHHHHHHHHHHhcCChhhHHHHHHHHhh-------CCCCch-----
Q 018876 213 FGRAGDLKQMEYLFRLMR---SERIKPS-----CVTLCSLVRAYGHAGKPEKLGSVLRFIDN-------SDIMLD----- 272 (349)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~----- 272 (349)
+.-.|++.+|.+++...- ..|...+ ...|+.+.-.+.+.|.+..+..+|..... .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 345566777766664331 1121111 12234444444455555555555544432 233321
Q ss_pred ------HHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 018876 273 ------TVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 273 ------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
..+|| ..-.|...|++-.|.+.|.+.... +.-++..|..+..+|...
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 23455 345677889999998888887765 455888999998888653
No 391
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=66.46 E-value=75 Score=26.40 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=15.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC
Q 018876 176 DSYGKAGHFEKMSAVMEYMQKYHY 199 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~ 199 (349)
..+..+|..+.|..+++.+.+.++
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHHc
Confidence 344566777777777777666553
No 392
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.37 E-value=56 Score=24.90 Aligned_cols=93 Identities=15% Similarity=-0.018 Sum_probs=67.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 018876 176 DSYGKAGHFEKMSAVMEYMQKYHYSWT----IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA 251 (349)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (349)
+-+.+.|++++|..-|......-++.. ...|..-..++.+.+.++.|+.-....++.+. ........-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence 457889999999999999887653322 23455556677888999999988888877652 2233333445678888
Q ss_pred CChhhHHHHHHHHhhCCC
Q 018876 252 GKPEKLGSVLRFIDNSDI 269 (349)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~ 269 (349)
..++.|+.-|+.+.+..+
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 889999999999988754
No 393
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.98 E-value=5 Score=32.82 Aligned_cols=117 Identities=18% Similarity=0.097 Sum_probs=77.7
Q ss_pred HHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCch-HHHHHHHHHHhccCchH
Q 018876 37 YGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNT-VTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 115 (349)
....|.++.|++.|...+... ++....|..-.+++.+.+.+..|++=++..... .||. .-|-.--.+-.-.|+|+
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchH
Confidence 446788999999999888764 677778888888999999999998888877765 3443 22322233334468899
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 018876 116 EMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKF 159 (349)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (349)
+|...+....+.+..+....+ +=...-+.+..++-...+++.
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHH
Confidence 999999998888766655433 223333334444433333333
No 394
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.84 E-value=1.2e+02 Score=28.34 Aligned_cols=228 Identities=10% Similarity=-0.043 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHH--HHHHHHHHhccCCCcchhhHH
Q 018876 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAE--MELTLVKMLSEDCEPDVWTMN 137 (349)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~ 137 (349)
+.+...-.....+....|+.++|......+-..|. ..+..++.++..+.+.|.+.. ..+-++.+...+ +...-.
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~ 201 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVT 201 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44555556677788888998888777777766653 356677888888876665433 222222333222 111111
Q ss_pred HHHHHHH------------ccCCHHHHHHHHHHHHhcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcC-CCC
Q 018876 138 CTLRAFG------------NSGQIDTMEKCYEKFQSAGIQPSINTFN---ILLDSYGKAGHFEKMSAVMEYMQKYH-YSW 201 (349)
Q Consensus 138 ~l~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 201 (349)
.+...+. -..+...+...+. .++++...-. ..+.-+ ...+.+.|..++....... ..+
T Consensus 202 ~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~ 275 (644)
T PRK11619 202 YLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNE 275 (644)
T ss_pred HHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCH
Confidence 1211110 0011111111111 1122221111 122222 3446688888888764433 221
Q ss_pred c--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHH
Q 018876 202 T--IVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCL 279 (349)
Q Consensus 202 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (349)
. ...+..+.......+..+++...+....... .+.....--++.....++++.+...+..|....- -...-.--+
T Consensus 276 ~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~ 352 (644)
T PRK11619 276 DQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQ 352 (644)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHH
Confidence 1 2233444433344332455666655543221 2334444445555577888888777777754322 234444556
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 018876 280 VDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 280 i~~~~~~g~~~~a~~~~~~~~ 300 (349)
.+++...|+.++|...|+.+.
T Consensus 353 aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 353 ADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 777777888888888887763
No 395
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.58 E-value=11 Score=30.99 Aligned_cols=92 Identities=12% Similarity=0.020 Sum_probs=51.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHH
Q 018876 215 RAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKG 294 (349)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 294 (349)
..|.++.|++.+...+... ++....|..-..++.+.+++..|++=++...+.+.. +..-|-.-..+-...|+|.+|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 4556666666666665544 344455555555666666666666666666554321 11223223333444667777777
Q ss_pred HHHHHHhcCCCCCH
Q 018876 295 VLEVMQQRGCKPDK 308 (349)
Q Consensus 295 ~~~~~~~~~~~p~~ 308 (349)
.|....+.++.+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 77776666654443
No 396
>PRK10941 hypothetical protein; Provisional
Probab=64.85 E-value=73 Score=25.68 Aligned_cols=77 Identities=16% Similarity=0.009 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 018876 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRG-CKPDKVTYRTMVRAY 318 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~ 318 (349)
.+.+-.+|.+.++++.|.++.+.+....+ -++.-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 45566677888888888888888877654 255556666667888888888888777776552 234444444444443
No 397
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.76 E-value=1.3e+02 Score=28.67 Aligned_cols=224 Identities=13% Similarity=0.060 Sum_probs=116.8
Q ss_pred hccCchHHHHHHHHHHhccCCCcch-------hhHHHHH-HHHHccCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHH
Q 018876 109 GRAKMFAEMELTLVKMLSEDCEPDV-------WTMNCTL-RAFGNSGQIDTMEKCYEKFQSA----GIQPSINTFNILLD 176 (349)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 176 (349)
....++.+|..++.++...-..|+. ..++.+- ......|+++.+.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3457788888888777654222221 1233322 2234678888888887776543 22345566677778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCch---HHHHHHHH--HHHhcCChHH--HHHHHHHHHhC---CCC---CcHHHHHH
Q 018876 177 SYGKAGHFEKMSAVMEYMQKYHYSWTI---VTYNIVID--AFGRAGDLKQ--MEYLFRLMRSE---RIK---PSCVTLCS 243 (349)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~--~~~~~~~~~~--a~~~~~~~~~~---~~~---~~~~~~~~ 243 (349)
+..-.|++++|..+..+..+..-.-+. ..|..+.. .+...|+... ....+...... ..+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999988776554222233 33333322 3445663222 22223322211 111 22234444
Q ss_pred HHHHHHhc-CChhhHHHHHHHHhhCCCCchHHH--HHHHHHHHHccCChHHHHHHHHHHHhcCCCC----CHHHHHHHHH
Q 018876 244 LVRAYGHA-GKPEKLGSVLRFIDNSDIMLDTVF--FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKP----DKVTYRTMVR 316 (349)
Q Consensus 244 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~ 316 (349)
+..++.+. +...++..-+.........|-... +..|+......|+.++|...++++......+ +...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555441 112222222222222222222222 2367788888999999999988887663333 3333333333
Q ss_pred H--HHccCchhhhHHHHH
Q 018876 317 A--YSTNGMKNHAKEFQD 332 (349)
Q Consensus 317 ~--~~~~g~~~~a~~~~~ 332 (349)
. ....|+.+.+...+.
T Consensus 666 ~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 666 LILWLAQGDKELAAEWLL 683 (894)
T ss_pred HHHhcccCCHHHHHHHHH
Confidence 2 345667666655443
No 398
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.69 E-value=1.5e+02 Score=29.39 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=58.6
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHhccC---CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHH----HHHH
Q 018876 101 YNTLIDAYGRAKMFAEMELTLVKMLSED---CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSIN----TFNI 173 (349)
Q Consensus 101 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 173 (349)
|..+++.+-+.+..+.+.++-...++.- .+.-..+++.+.+.....|.+-+|...+-. .||.. ....
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRq 1059 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHH
Confidence 5556666666666666666666555441 111234455666666666666666544322 22322 3344
Q ss_pred HHHHHHhcCCHHH------------HHH-HHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 018876 174 LLDSYGKAGHFEK------------MSA-VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYL 225 (349)
Q Consensus 174 l~~~~~~~~~~~~------------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 225 (349)
++-.++.+|.++. ... +++..-+........-|+.|-..+...+++.+|-.+
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 5555555555432 222 222222222222334455555555566666665443
No 399
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.68 E-value=80 Score=26.11 Aligned_cols=140 Identities=10% Similarity=0.037 Sum_probs=74.0
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc----
Q 018876 53 MKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQ-GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---- 127 (349)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 127 (349)
+.+...+..|...++.+... +...+++..+..++..+. |-.--...+......|++.|+-+.|++.+++..+.
T Consensus 60 lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~ 137 (393)
T KOG0687|consen 60 LCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL 137 (393)
T ss_pred HHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 33334445565555555433 222344444444444443 21122345566677889999999998888766544
Q ss_pred CCCcchhhHHHHHHHH-HccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018876 128 DCEPDVWTMNCTLRAF-GNSGQIDTMEKCYEKFQSAGIQPS----INTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 128 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
|.+.|+..+..-+..+ ....-..+-++..+.+.+.|..-+ ..+|..+- +....++.+|-.+|-+...
T Consensus 138 g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 138 GHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 5666666554444332 233333444444555555554322 23344332 2344578888888766543
No 400
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.21 E-value=35 Score=21.77 Aligned_cols=14 Identities=7% Similarity=0.171 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHHH
Q 018876 182 GHFEKMSAVMEYMQ 195 (349)
Q Consensus 182 ~~~~~a~~~~~~~~ 195 (349)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444333
No 401
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=63.73 E-value=83 Score=25.95 Aligned_cols=87 Identities=11% Similarity=-0.002 Sum_probs=50.1
Q ss_pred cCCChhHHHHHHHHhhcCCCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchH
Q 018876 39 RSGLFDKAFSLLEHMKNTPDC---QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFA 115 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (349)
..+-.+.|.+.|+.....+.- ..+......++....+.|+.+....+++..... .+......++.+++...+.+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHH
Confidence 444466777777776653221 234455556666666777755555555554433 35666777777777777777
Q ss_pred HHHHHHHHHhccC
Q 018876 116 EMELTLVKMLSED 128 (349)
Q Consensus 116 ~a~~~~~~~~~~~ 128 (349)
...++++.....+
T Consensus 219 ~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 219 LLKRLLDLLLSND 231 (324)
T ss_dssp HHHHHHHHHHCTS
T ss_pred HHHHHHHHHcCCc
Confidence 7777777777653
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.53 E-value=1.5e+02 Score=28.70 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 018876 66 YSILIKSCLKAFAFDKVQALLSDMST 91 (349)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 91 (349)
|..|+..|...|..++|+++|.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 44455555555555555555555544
No 403
>PRK09687 putative lyase; Provisional
Probab=63.32 E-value=80 Score=25.63 Aligned_cols=234 Identities=11% Similarity=-0.021 Sum_probs=144.1
Q ss_pred CchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCchHH
Q 018876 25 ANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAF----DKVQALLSDMSTQGIRPNTVT 100 (349)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 100 (349)
+|..+....+.++...|.. ++...+..+.. .+|...-...+.++...|+. .++...+..+... .++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 5666777777778777754 44444444544 35666666777778888764 4677777776443 456666
Q ss_pred HHHHHHHHhccCc-----hHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018876 101 YNTLIDAYGRAKM-----FAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPSINTFNILL 175 (349)
Q Consensus 101 ~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (349)
-...+.++...+. ...+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 6666666665542 1233444433332 2345555667777777776 4566666666653 3555556666
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018876 176 DSYGKAG-HFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 176 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
.++.+.+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 6666653 24456666666653 34777788888899898885 5555555555443 2 234677888888886
Q ss_pred hhHHHHHHHHhhCCCCchHHHHHHHHHHHH
Q 018876 255 EKLGSVLRFIDNSDIMLDTVFFNCLVDAYG 284 (349)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (349)
+|...+..+.+.. +|..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 5777777777643 46666555555543
No 404
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=62.82 E-value=16 Score=17.29 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 018876 6 KQPEKAHELFQAMVDEGCDANTQSFTALLS 35 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 35 (349)
|+++.|..+|+++.... +-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 45666777777766542 344555554443
No 405
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.82 E-value=27 Score=30.21 Aligned_cols=102 Identities=18% Similarity=0.105 Sum_probs=70.5
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhH
Q 018876 3 GKCKQPEKAHELFQAMVDEGCDAN-TQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDK 81 (349)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (349)
.+.+.++.|+.++.+.++. .|| +..|..-..++.+.+++..|+.=+....+.. +-....|..-..++...+.+.+
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHH
Confidence 3567888999999998887 454 3344444477888899988888887777663 3334455555566777777888
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 018876 82 VQALLSDMSTQGIRPNTVTYNTLIDAYGR 110 (349)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (349)
|...|+..... .|+..-....+.-|-+
T Consensus 91 A~~~l~~~~~l--~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 91 ALLDLEKVKKL--APNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHhhhc--CcCcHHHHHHHHHHHH
Confidence 88888777664 6777766666655543
No 406
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=62.31 E-value=29 Score=28.56 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHH--HHHHHHHHhcCChhHHHHH
Q 018876 8 PEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTY--SILIKSCLKAFAFDKVQAL 85 (349)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~ 85 (349)
+.+|.++|++..+.| ..+|+. -+.+...|.. .+.+.+. ..++.+| ..+.-+..+.|+..+|.+.
T Consensus 232 i~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~------~da~~rR---Dtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 232 IVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQ------HEAQLRR---DTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred HHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccc------hhhhhhc---ccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 457888888877754 223331 1112222222 2223333 2344444 3455555677888888888
Q ss_pred HHHHHhCCCCCchH---HHHHHHHHHhccCchHHHHHHHHHHhccCCC
Q 018876 86 LSDMSTQGIRPNTV---TYNTLIDAYGRAKMFAEMELTLVKMLSEDCE 130 (349)
Q Consensus 86 ~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 130 (349)
++++.+. .|-.. ....|+.++....-+.++..++-+..+...+
T Consensus 298 ~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislP 343 (556)
T KOG3807|consen 298 MRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLP 343 (556)
T ss_pred HHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 8887765 22222 3345777777777666666666665544433
No 407
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.13 E-value=90 Score=25.83 Aligned_cols=117 Identities=8% Similarity=-0.023 Sum_probs=67.4
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCchHHHHHHHH-HHhccCchHHH
Q 018876 43 FDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMST----QGIRPNTVTYNTLID-AYGRAKMFAEM 117 (349)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~-~~~~~~~~~~a 117 (349)
+++--+..+...+..|...-...+......|++-|+-+.|.+.+.+..+ .|.+.|+..+..-+. .|....-..+-
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ 163 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES 163 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 3444444444444433233345667778889999999999988776544 477777665544332 23333334555
Q ss_pred HHHHHHHhccCCCcc----hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 018876 118 ELTLVKMLSEDCEPD----VWTMNCTLRAFGNSGQIDTMEKCYEKFQS 161 (349)
Q Consensus 118 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (349)
++..+.+.+.|..-+ -.+|..+- +....++.+|-.+|-....
T Consensus 164 iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 164 IEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 555556666654322 23333332 2345678888888776554
No 408
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=61.29 E-value=28 Score=23.49 Aligned_cols=47 Identities=0% Similarity=-0.074 Sum_probs=31.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018876 244 LVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555555666678888888877766666666556666666666544
No 409
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.24 E-value=1.4e+02 Score=27.64 Aligned_cols=155 Identities=11% Similarity=0.107 Sum_probs=90.1
Q ss_pred CCCChHHHHHHHHHHHhcCCCCchh-----hHHHHHHHHHcCCChhHHHHHHHHhhcCCCC---CCCHHHHHHH-HHHHH
Q 018876 4 KCKQPEKAHELFQAMVDEGCDANTQ-----SFTALLSAYGRSGLFDKAFSLLEHMKNTPDC---QPDVNTYSIL-IKSCL 74 (349)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l-~~~~~ 74 (349)
...+++.|+..+++.....-.++.. ....++..+.+.+... |....++..+...- .+-...|..+ +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 4678899999999776543233322 2234556666666555 88888876653221 1222233333 33333
Q ss_pred hcCChhHHHHHHHHHHhCC---CCCchHHHHHHHHHHh--ccCchHHHHHHHHHHhccC---------CCcchhhHHHHH
Q 018876 75 KAFAFDKVQALLSDMSTQG---IRPNTVTYNTLIDAYG--RAKMFAEMELTLVKMLSED---------CEPDVWTMNCTL 140 (349)
Q Consensus 75 ~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~ 140 (349)
..+++..|.+.++.+.... ..|...++..++.+.. +.+..+++.+.++++.... ..|...+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3479999999998876642 2444555555555544 3455666777666663321 234566777777
Q ss_pred HHHH--ccCCHHHHHHHHHHH
Q 018876 141 RAFG--NSGQIDTMEKCYEKF 159 (349)
Q Consensus 141 ~~~~--~~~~~~~a~~~~~~~ 159 (349)
..++ ..|+++.+.+.++++
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 6654 567766766665554
No 410
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=60.94 E-value=58 Score=23.98 Aligned_cols=62 Identities=6% Similarity=-0.007 Sum_probs=42.0
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHH
Q 018876 229 MRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAE 291 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 291 (349)
+.+.|++++..-. .++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-...
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4556776665433 4555555566677888899888888776676666666777777776543
No 411
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.21 E-value=49 Score=22.14 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=31.5
Q ss_pred ChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 018876 78 AFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTMEKCYE 157 (349)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 157 (349)
..++|..+.+-+...+. ....+--.-+..+.+.|++++|+ ..-. ....||...|..+. -.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~~~--~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LLPQ--CHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HHHT--TS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hhcc--cCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 44555555555555432 12222222233445555555551 1111 11244444443332 235555555555555
Q ss_pred HHHhcC
Q 018876 158 KFQSAG 163 (349)
Q Consensus 158 ~~~~~~ 163 (349)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554444
No 412
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=59.14 E-value=92 Score=25.55 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc----------cCChHHH
Q 018876 223 EYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR----------LKCFAEM 292 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a 292 (349)
.++|+.+.+.++.|.-.++.-+.-.+.+.=.+...+.+|+.+..- +.-|..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 567888888888898888877777777777888899999988753 2236666666654 4666655
Q ss_pred HHHHH
Q 018876 293 KGVLE 297 (349)
Q Consensus 293 ~~~~~ 297 (349)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55543
No 413
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=59.10 E-value=92 Score=24.93 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=28.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 018876 29 SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLK 75 (349)
Q Consensus 29 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 75 (349)
..+.++..+.+.+....|..+.+.+... +.=..+...++.....
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l---~~F~~~LE~LLh~vL~ 127 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL---PYFSHALELLLHTVLE 127 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC---CCcHHHHHHHHHHHHh
Confidence 3466777788888888888888887754 2334455555554443
No 414
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=58.11 E-value=1.5e+02 Score=27.10 Aligned_cols=65 Identities=5% Similarity=0.045 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876 235 KPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
..+.....-++..|.+.|-.+.+..+.+.+-..-. ...-|..-+.-+.+.|+...+..+.+.+.+
T Consensus 402 ~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 402 LDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp --SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455566677778788877777777776544322 234455566667777777666665555543
No 415
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=58.09 E-value=1.2e+02 Score=26.06 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCchHHHHHHHHHHhccCchHHHHHHHHHHh
Q 018876 66 YSILIKSCLKAFAFDKVQALLSDMSTQ--GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
.--|++...-.|+.+...+.++.|.+. |..|...+---+.-+|.-.+++.+|.+.|-...
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 334566677788877777777777664 333332221334556777788888888876654
No 416
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.05 E-value=91 Score=24.58 Aligned_cols=117 Identities=12% Similarity=-0.051 Sum_probs=58.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHhcCChh
Q 018876 178 YGKAGHFEKMSAVMEYMQKYHYSWTI-VTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCV-TLCSLVRAYGHAGKPE 255 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 255 (349)
|.....++.|+..+.+....+ |+. .-|..=+..+.+..+++.+..--+..++. .|+.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 344455666666655555433 444 33344455555666666666555544432 34432 2233444555566667
Q ss_pred hHHHHHHHHh----hCCCCchHHHHHHHHHHHHccCChHHHHHHHHH
Q 018876 256 KLGSVLRFID----NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEV 298 (349)
Q Consensus 256 ~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 298 (349)
.|+..+.+.. ...+.+-...+..|..+--..=...+..++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 7776666552 233334444555555443333334444444443
No 417
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=57.88 E-value=38 Score=20.18 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 018876 271 LDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTN 321 (349)
Q Consensus 271 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 321 (349)
|....++.++..+++..-.+.++..+.++.+.|. .+..+|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 4556677777777777777778888887777764 3566666666665553
No 418
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=57.79 E-value=26 Score=23.89 Aligned_cols=45 Identities=7% Similarity=0.141 Sum_probs=23.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 018876 278 CLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNG 322 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 322 (349)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444555555556666666666555555555555555555555
No 419
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=57.66 E-value=48 Score=21.28 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=33.9
Q ss_pred CCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC
Q 018876 24 DANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFA 78 (349)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (349)
|.|...-..+...+...|++++|++.+-.+.+...-.-+...-..++..+.-.|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4566777778888888888888888887777664323344555555555555554
No 420
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=57.62 E-value=92 Score=24.50 Aligned_cols=92 Identities=13% Similarity=0.119 Sum_probs=48.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC------------CCCCcHHHHHHHH
Q 018876 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE------------RIKPSCVTLCSLV 245 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~l~ 245 (349)
|.+..+.+--.++.+-....++.-+.....+++ +...|+..+|+.-++.-... --.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 344444443444444444444444444444333 34556666666555543321 0145666666666
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCch
Q 018876 246 RAYGHAGKPEKLGSVLRFIDNSDIMLD 272 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (349)
..|. .+++++|.+++..+-+.|..|.
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 6554 4567777777777777777654
No 421
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.57 E-value=1.2e+02 Score=25.92 Aligned_cols=56 Identities=7% Similarity=-0.042 Sum_probs=39.4
Q ss_pred HHHhccCchHHHHHHHHHHhccCCCcchh--hHHHHHHHHH--ccCCHHHHHHHHHHHHhc
Q 018876 106 DAYGRAKMFAEMELTLVKMLSEDCEPDVW--TMNCTLRAFG--NSGQIDTMEKCYEKFQSA 162 (349)
Q Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 162 (349)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445788999999999999876 455444 4555555554 456778888888887654
No 422
>PRK13342 recombination factor protein RarA; Reviewed
Probab=57.28 E-value=1.3e+02 Score=26.12 Aligned_cols=87 Identities=8% Similarity=-0.045 Sum_probs=41.4
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC-----hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCchh
Q 018876 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC-----FAEMKGVLEVMQQRGCKPDKVTYRTMVRAYSTNGMKN 325 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 325 (349)
.++++.|..++..+.+.|..|....-..++.++-.-|. ...|...++.....|++--.......+-.++.+-+-.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~~~~~l~~~pksn 322 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQAVIYLALAPKSN 322 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCCcc
Confidence 35677777777777777665554444444444333332 2233444454555565332233322222334444444
Q ss_pred hhHHHHHHHHHh
Q 018876 326 HAKEFQDLVEKM 337 (349)
Q Consensus 326 ~a~~~~~~~~~~ 337 (349)
.+-..++...+.
T Consensus 323 ~~~~a~~~a~~~ 334 (413)
T PRK13342 323 AAYTAINAALAD 334 (413)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 423
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=56.07 E-value=1.1e+02 Score=24.83 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=14.2
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHHHH
Q 018876 218 DLKQMEYLFRLMRSERIKPSCVTLC 242 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (349)
+...|...+......+.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 5566666666666655444444444
No 424
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=55.18 E-value=45 Score=22.45 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=29.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018876 209 VIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44444455556667777777776665566666666666666666544
No 425
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=55.15 E-value=1.6e+02 Score=26.36 Aligned_cols=179 Identities=9% Similarity=0.025 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHH
Q 018876 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCT 139 (349)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (349)
+.|.....+++..+..+..++-++.+..+|..-| -+-..|..++.+|... ..+.-..+|+++.+... .|+..-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 3444455555555555555555555555555543 2444555555555555 33445555555544321 122222233
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCchHHHHHHHHHH
Q 018876 140 LRAFGNSGQIDTMEKCYEKFQSAGIQP-----SINTFNILLDSYGKAGHFEKMSAVMEYMQKY-HYSWTIVTYNIVIDAF 213 (349)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 213 (349)
...|.+ ++.+.+..+|.++...=++. -...|.-+... -..+.+....+..++... |...-...+.-+-..|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 333333 55555555555554432110 11123333221 123445555555444332 2222233444444555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 018876 214 GRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 246 (349)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (349)
....++.+|++++..+.+.. ..|...-..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 55556666666666555443 233333333433
No 426
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=54.87 E-value=10 Score=22.40 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=19.4
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCH
Q 018876 40 SGLFDKAFSLLEHMKNTPDCQPDV 63 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~ 63 (349)
.=+++.|...|..+...+.++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 347899999999999877777764
No 427
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.75 E-value=1.4e+02 Score=25.68 Aligned_cols=160 Identities=11% Similarity=-0.039 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHhccC--CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc---------CCCCC
Q 018876 99 VTYNTLIDAYGRAKMFAEMELTLVKMLSED--CEPDVWTMNCTLRAFGNSGQIDTMEKCYEKFQSA---------GIQPS 167 (349)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 167 (349)
..+.-+..-|..+|+++.|++.|-+...-- .+-.+..|-.+|..-.-.|+|.....+..+..+. .+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 356667788888999999999988855431 1233455666666667778877776666665543 12333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHHhcCChHHHHH-----HHHHHHhCCCCC
Q 018876 168 INTFNILLDSYGKAGHFEKMSAVMEYMQKYH------YSWTIVTYNIVIDAFGRAGDLKQMEY-----LFRLMRSERIKP 236 (349)
Q Consensus 168 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~-----~~~~~~~~~~~~ 236 (349)
...+..+..... +++..|.+.|-...... +.|.-.+....+.+++.-++-+--.. .|+.+.+ .
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle----l 304 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE----L 304 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----c
Confidence 444444444333 36666666554332211 12322222233334433333222212 2222222 2
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018876 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (349)
.+.....+..-| .+++..+.++++++..
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 223334343333 4677888888877764
No 428
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.57 E-value=1.3e+02 Score=25.10 Aligned_cols=115 Identities=10% Similarity=0.061 Sum_probs=67.6
Q ss_pred cCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHH--HHHHHHHhccCchHH
Q 018876 39 RSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY--NTLIDAYGRAKMFAE 116 (349)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ 116 (349)
..--+.+|.++|++..+.+ ..+|+ +..+.+.--...+.+.+.. .++.+| ..|.-+..+.|+..+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~-----e~~yr-------~sqq~qh~~~~~da~~rRD--tnvl~YIKRRLAMCARklGrlrE 293 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG-----ETIYR-------QSQQCQHQSPQHEAQLRRD--TNVLVYIKRRLAMCARKLGRLRE 293 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH-----HHHHh-------hHHHHhhhccchhhhhhcc--cchhhHHHHHHHHHHHHhhhHHH
Confidence 3345778889998887642 23333 1111111112233445543 244444 456666778899999
Q ss_pred HHHHHHHHhccCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 018876 117 MELTLVKMLSEDCEPD-VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAGIQPS 167 (349)
Q Consensus 117 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 167 (349)
|.+.++++.+.-.-.+ ......++.++....-+.++..++.+..+...+.+
T Consensus 294 A~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkS 345 (556)
T KOG3807|consen 294 AVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKS 345 (556)
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcch
Confidence 9999999887631111 12234578888887777777777777666554433
No 429
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=54.39 E-value=1.6e+02 Score=26.19 Aligned_cols=239 Identities=12% Similarity=0.094 Sum_probs=120.3
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhcc------CchHHHHHHHHHHhccC-C-CcchhhHHHHHHHHHccCCHHH-HHH
Q 018876 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRA------KMFAEMELTLVKMLSED-C-EPDVWTMNCTLRAFGNSGQIDT-MEK 154 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~-a~~ 154 (349)
.+|++..+. .|+...|+..|..|... ........+++.....+ . +-....|..+...++......+ |..
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 555555543 34555665555555332 13344444555444332 1 2223445555555544443332 222
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHH-HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC-hHH-H-HHHHHHH
Q 018876 155 CYEKFQSAGIQPSINTFNILLDSYGKAG-HFEK-MSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGD-LKQ-M-EYLFRLM 229 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-a-~~~~~~~ 229 (349)
+. ..++..+...|-.-+....+.. +++- ...++......-..+....|+... .++ ... . ..++..+
T Consensus 381 l~----~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 381 LT----TELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred hh----HHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 22 2233445555554444444221 2221 122233333332333344444433 222 111 1 1222333
Q ss_pred HhCCCCCcHHHH-HHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc--cCChHHHHHHHHHHHhc-CCC
Q 018876 230 RSERIKPSCVTL-CSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR--LKCFAEMKGVLEVMQQR-GCK 305 (349)
Q Consensus 230 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~-~~~ 305 (349)
...+ .|+..++ +.++.-+.+.+-..+|...+..+.... +|+...|..+|..-.. .-+..-+..+++.|... |
T Consensus 452 ~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-- 527 (568)
T KOG2396|consen 452 LSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-- 527 (568)
T ss_pred HHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--
Confidence 3322 3444433 456677777788888888888877753 4677777777655322 12266677888887665 5
Q ss_pred CCHHHHHHHHHHHHccCchhhhHHHHHHHHHh
Q 018876 306 PDKVTYRTMVRAYSTNGMKNHAKEFQDLVEKM 337 (349)
Q Consensus 306 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 337 (349)
.|+..|.-.+.--...|..+.+-.++.+..++
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 47777877777667788887777766655543
No 430
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.88 E-value=65 Score=21.60 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=22.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHh
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQ 301 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 301 (349)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467788888888888888888888877
No 431
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.83 E-value=46 Score=19.86 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018876 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
....++.++...++..-.++++..+.++...|. .+..+|..-++.
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~ 51 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRS 51 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 334444455555444445555555555554442 333344333333
No 432
>PRK09462 fur ferric uptake regulator; Provisional
Probab=53.76 E-value=79 Score=22.58 Aligned_cols=63 Identities=2% Similarity=0.033 Sum_probs=39.7
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhc-CChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChH
Q 018876 227 RLMRSERIKPSCVTLCSLVRAYGHA-GKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFA 290 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 290 (349)
+.+.+.|.+++..= ..++..+... +..-.|.++++.+.+.++..+..|...-+..+...|-..
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34455676666443 3445555544 457778888888887776666666656666677766543
No 433
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.55 E-value=20 Score=25.06 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=17.7
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 018876 217 GDLKQMEYLFRLMRSERIKPSCVTLCSLVRA 247 (349)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (349)
|.-..|..+|+.|++.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 445566777777777776664 35555543
No 434
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=52.44 E-value=1.3e+02 Score=24.73 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhc----------cCchHH
Q 018876 47 FSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGR----------AKMFAE 116 (349)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~ 116 (349)
.++++.+... ++.|.-.++.-+.-.+.+.=.+..++.+|+.+.... .-|..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 5677777754 678888877766666777778888999999988742 226666666654 388888
Q ss_pred HHHHHHHH
Q 018876 117 MELTLVKM 124 (349)
Q Consensus 117 a~~~~~~~ 124 (349)
-.++++.-
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 88777653
No 435
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=52.28 E-value=93 Score=22.93 Aligned_cols=60 Identities=12% Similarity=-0.019 Sum_probs=31.9
Q ss_pred HhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChh
Q 018876 195 QKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPE 255 (349)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 255 (349)
...|+.++..- ..++..+...++.-.|.++++.+.+.+..++..|....+..+...|-+.
T Consensus 18 ~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 34455433322 2334444444555566777777766665555555555556666655443
No 436
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.79 E-value=51 Score=28.66 Aligned_cols=53 Identities=6% Similarity=-0.174 Sum_probs=23.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018876 178 YGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRS 231 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (349)
+...++++.|..++.++.+.... ....|..=..++.+.+++..|..=+..+.+
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 34445555555555555554311 222222223445555555555544444433
No 437
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=51.68 E-value=11 Score=21.10 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=17.7
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCH
Q 018876 40 SGLFDKAFSLLEHMKNTPDCQPDV 63 (349)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~ 63 (349)
.-+++.|...|..+...+.+||+.
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHh
Confidence 448899999999999888888764
No 438
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=51.62 E-value=1.8e+02 Score=25.92 Aligned_cols=195 Identities=11% Similarity=0.099 Sum_probs=100.4
Q ss_pred CcchhhHHHHHHHHHcc------CCHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCC
Q 018876 130 EPDVWTMNCTLRAFGNS------GQIDTMEKCYEKFQSAG-IQP-SINTFNILLDSYGKAGHFEK-MSAVMEYMQKYHYS 200 (349)
Q Consensus 130 ~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~ 200 (349)
.|+...|+..|..|... ..+.....+++.....+ ..+ ....|..+.-.++......+ |..+..+. +.
T Consensus 312 l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~ 387 (568)
T KOG2396|consen 312 LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FR 387 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hc
Confidence 45666676666665432 23455556666655543 222 34456666666665554333 33333233 33
Q ss_pred CchHHHHHHHHHHHhc-CChHHH-HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-hhhH--HHHHHHHhhCCCCchHHH
Q 018876 201 WTIVTYNIVIDAFGRA-GDLKQM-EYLFRLMRSERIKPSCVTLCSLVRAYGHAGK-PEKL--GSVLRFIDNSDIMLDTVF 275 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~~~~~~~~~~~~~ 275 (349)
.+...|-.-+...... .+.+-. ..++......-..+....|+... .++ +... ..++..+...+ .|+..+
T Consensus 388 ~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~t 461 (568)
T KOG2396|consen 388 DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVT 461 (568)
T ss_pred chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceee
Confidence 3555665555554422 232222 22333333322233334444433 222 2221 12223333332 234333
Q ss_pred -HHHHHHHHHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--ccCchhhhHHHHHHHH
Q 018876 276 -FNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAYS--TNGMKNHAKEFQDLVE 335 (349)
Q Consensus 276 -~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 335 (349)
-+.++.-+.+.|-..+|..++..+... .+|+...|..+|+--. .+-+..-+.++++.+.
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 356788888999999999999999886 3567888888876421 1222555666666543
No 439
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.46 E-value=1.6e+02 Score=25.31 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=28.6
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHhc
Q 018876 143 FGNSGQIDTMEKCYEKFQSAGIQPSIN--TFNILLDSYG--KAGHFEKMSAVMEYMQKY 197 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 197 (349)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34666677777777666665 343333 2333333332 244566666666655443
No 440
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=50.69 E-value=44 Score=22.74 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=24.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 018876 208 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGK 253 (349)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (349)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3444444555556666666666665555555555445555555554
No 441
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=50.48 E-value=51 Score=19.40 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=24.9
Q ss_pred HHccCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-----HccCchhhhHHH
Q 018876 283 YGRLKCFAEMKGVLEVMQQRGCKPDKVTYRTMVRAY-----STNGMKNHAKEF 330 (349)
Q Consensus 283 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~ 330 (349)
+...|++=+|-++++++=.....|....+..+|... .+.|+.+.|.++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 445666666777766665432233455555555532 345666555543
No 442
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.17 E-value=1.4e+02 Score=24.35 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 018876 204 VTYNIVIDAFGRAGDLKQMEYLFR 227 (349)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~ 227 (349)
..+..+...|++.++.+.+.+..+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHH
Confidence 344444555555555555444443
No 443
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=50.17 E-value=46 Score=18.83 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=17.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCCCHH
Q 018876 279 LVDAYGRLKCFAEMKGVLEVMQQRGCKPDKV 309 (349)
Q Consensus 279 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 309 (349)
+.-++.+.|++++|.+..+.+.+. .|+-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 445566777777777777776665 44433
No 444
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.12 E-value=1.4e+02 Score=24.32 Aligned_cols=195 Identities=11% Similarity=0.088 Sum_probs=89.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCchHH-------HHHHHHHHhccCchHHHHHHHHHHhc----cCCCcchhhHHHH
Q 018876 71 KSCLKAFAFDKVQALLSDMSTQGIRPNTVT-------YNTLIDAYGRAKMFAEMELTLVKMLS----EDCEPDVWTMNCT 139 (349)
Q Consensus 71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l 139 (349)
+-..+.+++++|+..+.++...|+..+..+ ...+...|...|+....-+......+ -.-+.......++
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 334455666666666666666655544333 23345555555554443333322111 1111223333444
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHH----HHhcCCCCchHHHHHH
Q 018876 140 LRAFGNS-GQIDTMEKCYEKFQSAGIQPS-----INTFNILLDSYGKAGHFEKMSAVMEY----MQKYHYSWTIVTYNIV 209 (349)
Q Consensus 140 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l 209 (349)
+..+... ..++..+.+.....+....-. ...-.-++..+.+.|.+.+|..+... +.+.+-+|+..+...+
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhll 170 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLL 170 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhh
Confidence 4444322 234444444444433211111 11224567788899999999877644 4455555554444333
Q ss_pred -HHHHHhcCChHHHHHHHHHHHhC----CCCCcHHHHHHHHHHHH--hcCChhhHHHHHHHHh
Q 018876 210 -IDAFGRAGDLKQMEYLFRLMRSE----RIKPSCVTLCSLVRAYG--HAGKPEKLGSVLRFID 265 (349)
Q Consensus 210 -~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 265 (349)
-.+|...++..++..-+...+.. -+||-...-.-++.+.. ...++..|...|-+..
T Consensus 171 ESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~ 233 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEAL 233 (421)
T ss_pred hHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHH
Confidence 23444455555554444433221 12333333333333332 2334555555554443
No 445
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=48.56 E-value=70 Score=20.40 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018876 154 KCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ 195 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 195 (349)
++|+-....|+..|...|..++..+..+=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555666666666666555554445555555555553
No 446
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.53 E-value=1.5e+02 Score=24.24 Aligned_cols=88 Identities=14% Similarity=0.097 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCcHHHH
Q 018876 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-----RIKPSCVTL 241 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 241 (349)
....-...+..+...|++..|++++.+..+.- . ....|+.+=..- .++++.......+.+. -..-|+..|
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y 200 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---SQLQETLELIEEQLDSDLSKVCQDFDPDKY 200 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 44445556666777788888888777665431 0 111111111111 1122222222222211 114566777
Q ss_pred HHHHHHHHhcCChhhHHH
Q 018876 242 CSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~ 259 (349)
..+..+|.-.|+...+.+
T Consensus 201 ~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 201 SKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHhhhHHHHH
Confidence 778888777776655543
No 447
>PRK09462 fur ferric uptake regulator; Provisional
Probab=47.86 E-value=1e+02 Score=22.05 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=34.5
Q ss_pred HHhcCCCCchHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCh
Q 018876 194 MQKYHYSWTIVTYNIVIDAFGRA-GDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKP 254 (349)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (349)
+.+.|+.++.. -..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44455554333 23344444443 45667777777777766555666666666666666654
No 448
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.54 E-value=75 Score=20.48 Aligned_cols=55 Identities=15% Similarity=0.003 Sum_probs=31.9
Q ss_pred HHhcCChhhHHHHHHHH----hhCCCCc----hHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 248 YGHAGKPEKLGSVLRFI----DNSDIML----DTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 248 ~~~~~~~~~a~~~~~~~----~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
..+.|++..|.+.+... ...+... -....-.+.......|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34678888776555443 3333222 1122223455566778888888888887654
No 449
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.32 E-value=1.4e+02 Score=23.53 Aligned_cols=163 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHH-HccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--
Q 018876 104 LIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAF-GNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGK-- 180 (349)
Q Consensus 104 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 180 (349)
+++.+-..++++++...++++...+...+..--+.+..+| ...|....+.+++..+.+....-.......++.-|.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh-----------------HHHHHHHHHHHhC---CCCCcHHH
Q 018876 181 AGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDL-----------------KQMEYLFRLMRSE---RIKPSCVT 240 (349)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~a~~~~~~~~~~---~~~~~~~~ 240 (349)
..+...-..=+-.+....+.|...+-...+-.+--.|++ +.|...|+...+. .++|+..+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHH-----hcCChhhHHHHHHHHhh
Q 018876 241 LCSLVRAYG-----HAGKPEKLGSVLRFIDN 266 (349)
Q Consensus 241 ~~~l~~~~~-----~~~~~~~a~~~~~~~~~ 266 (349)
+..++--++ ..|+.++|.++.+...+
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 450
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=47.12 E-value=84 Score=20.95 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=10.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 018876 174 LLDSYGKAGHFEKMSAVMEYM 194 (349)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~ 194 (349)
++..|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344455555666665555554
No 451
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.98 E-value=95 Score=21.50 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-chHHHHHHHHHHhccCchHHHHHHHHHH
Q 018876 60 QPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRP-NTVTYNTLIDAYGRAKMFAEMELTLVKM 124 (349)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 124 (349)
.-|.......+. +++. .+.+.++|..|...|+.- -+..|......+...|++++|.++|+.-
T Consensus 63 ~nD~RylkiWi~-ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 63 KNDERYLKIWIK-YADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp TT-HHHHHHHHH-HHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 345544444443 3332 238888999998876644 3456777788888889999999988753
No 452
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=46.58 E-value=1.5e+02 Score=23.74 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=40.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcC-CCC-----CHHHHHHHHHHHHccCchhhhHHHHHHHHHhHHhhhcc
Q 018876 278 CLVDAYGRLKCFAEMKGVLEVMQQRG-CKP-----DKVTYRTMVRAYSTNGMKNHAKEFQDLVEKMDETCLAM 344 (349)
Q Consensus 278 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 344 (349)
.++..|.+.|+.+.|..++--+...+ ... +...-..++......|+++-+.++.+-+..+++++...
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~~~l 256 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEGNTL 256 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcccCcC
Confidence 35555666666666665554444332 111 23344556667777888888888888888887766543
No 453
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.33 E-value=4.4e+02 Score=28.97 Aligned_cols=257 Identities=12% Similarity=0.028 Sum_probs=128.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCchHHHHHH-HHHHhc
Q 018876 32 ALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQGIRPNTVTYNTL-IDAYGR 110 (349)
Q Consensus 32 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 110 (349)
.-+......|++..|..-|+.+.+.+ ++....++-++......+.++.+....+-.... ..+....++.+ +.+--+
T Consensus 1454 ~qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~ 1530 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWR 1530 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhh
Confidence 34455677899999999999999874 455778888888888888888887766655543 23333344433 334456
Q ss_pred cCchHHHHHHHHHHhccCCCcchhhHHHH--HHHHHcc--CCHHHHHHHHHHHHhcCC--------CC-CHHHHHHHHHH
Q 018876 111 AKMFAEMELTLVKMLSEDCEPDVWTMNCT--LRAFGNS--GQIDTMEKCYEKFQSAGI--------QP-SINTFNILLDS 177 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~--------~~-~~~~~~~l~~~ 177 (349)
.++++....... . .+..+|... .....+. .+.-.-.+..+.+.+.-+ .- =...|..++..
T Consensus 1531 l~qwD~~e~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kL 1603 (2382)
T KOG0890|consen 1531 LSQWDLLESYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKL 1603 (2382)
T ss_pred hcchhhhhhhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHH
Confidence 677776665544 1 122233222 2222221 221111122222222211 10 01233444433
Q ss_pred HHhcCCHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHhcCChHHHHHHHH-HHHhCCCC-----CcHHHHHHHHHHHHh
Q 018876 178 YGKAGHFEKMSAVMEYMQK-YHYSWTIVTYNIVIDAFGRAGDLKQMEYLFR-LMRSERIK-----PSCVTLCSLVRAYGH 250 (349)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~-----~~~~~~~~l~~~~~~ 250 (349)
+.-.. .+...+.+..... ....-+...|..-+..-....+..+-+--++ .+...... -...+|....+....
T Consensus 1604 H~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~ 1682 (2382)
T KOG0890|consen 1604 HLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL 1682 (2382)
T ss_pred HHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh
Confidence 32211 1111111111100 0001111222222211111111111111111 11111111 224667778888888
Q ss_pred cCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 251 AGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
.|.++.|...+-.+.+.+. +..+-...+.....|+...|+.++++..+.
T Consensus 1683 aG~~q~A~nall~A~e~r~---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESRL---PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cccHHHHHHHHHhhhhccc---chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999887777766652 345556777788899999999999888755
No 454
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=45.23 E-value=3.2e+02 Score=27.03 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHccC--CHHHHHHHHHHHHhc
Q 018876 134 WTMNCTLRAFGNSG--QIDTMEKCYEKFQSA 162 (349)
Q Consensus 134 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 162 (349)
.....++.+|.+.+ ++++|+....++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34456677777776 777777777777655
No 455
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=44.86 E-value=63 Score=21.90 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.2
Q ss_pred HHHHhh
Q 018876 49 LLEHMK 54 (349)
Q Consensus 49 ~~~~~~ 54 (349)
.+.+++
T Consensus 11 ~L~~Lk 16 (113)
T PF08870_consen 11 QLKKLK 16 (113)
T ss_pred HHHHHH
Confidence 333333
No 456
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.70 E-value=1.7e+02 Score=23.72 Aligned_cols=25 Identities=4% Similarity=-0.210 Sum_probs=14.8
Q ss_pred ChhhHHHHHHHHhhCCCCchHHHHH
Q 018876 253 KPEKLGSVLRFIDNSDIMLDTVFFN 277 (349)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (349)
+...|...+......+.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 5666777777666666544444444
No 457
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=44.19 E-value=90 Score=20.86 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=7.8
Q ss_pred HHHHHHHHhhcCCCCCC
Q 018876 45 KAFSLLEHMKNTPDCQP 61 (349)
Q Consensus 45 ~a~~~~~~~~~~~~~~~ 61 (349)
+|.+.+.+++...++.|
T Consensus 6 ~a~~~L~~Lk~~Tgi~~ 22 (105)
T TIGR03184 6 TAKDQLRRLKRRTGLTP 22 (105)
T ss_pred HHHHHHHHHhcccCCCc
Confidence 34444444444444444
No 458
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=43.95 E-value=43 Score=16.65 Aligned_cols=24 Identities=8% Similarity=0.296 Sum_probs=14.7
Q ss_pred ChHHHHHHHHHHHhcCCCCchhhHHH
Q 018876 7 QPEKAHELFQAMVDEGCDANTQSFTA 32 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~~ 32 (349)
.++.|..+|++.... .|++.+|..
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 456677777776654 466666543
No 459
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.73 E-value=1.7e+02 Score=23.56 Aligned_cols=81 Identities=10% Similarity=0.161 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHHcCCChhHHHHHHHHhhcCC----CCCCCHHHHHHHHHHHHhcCCh
Q 018876 7 QPEKAHELFQAMVDEGCDAN---TQSFTALLSAYGRSGLFDKAFSLLEHMKNTP----DCQPDVNTYSILIKSCLKAFAF 79 (349)
Q Consensus 7 ~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~ 79 (349)
.+++|+.-|++..+...... ..+...++....+.|++++..+.|.++...- .-.-+..+.|.++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 44555555555544321111 1223334445555555555555555543210 0012334444555544444444
Q ss_pred hHHHHHHH
Q 018876 80 DKVQALLS 87 (349)
Q Consensus 80 ~~a~~~~~ 87 (349)
+....+++
T Consensus 122 ~LLQ~FYe 129 (440)
T KOG1464|consen 122 DLLQEFYE 129 (440)
T ss_pred HHHHHHHH
Confidence 44444433
No 460
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.72 E-value=1.6e+02 Score=23.04 Aligned_cols=101 Identities=10% Similarity=-0.005 Sum_probs=0.0
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CchHHHHHH--HHHHHHccCChHHHHHHHHHHHhcCCCCCH
Q 018876 232 ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDI-MLDTVFFNC--LVDAYGRLKCFAEMKGVLEVMQQRGCKPDK 308 (349)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~--li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 308 (349)
..+.+...-++.|+--|.-...+.+|...|..-..... ..+...++. -|......|+.++|.+....+...-+..|.
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Q ss_pred HHHHHHHHH----HHccCchhhhHHHHH
Q 018876 309 VTYRTMVRA----YSTNGMKNHAKEFQD 332 (349)
Q Consensus 309 ~~~~~l~~~----~~~~g~~~~a~~~~~ 332 (349)
..+-.+..- ..+.|..++|.++.+
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHH
No 461
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=43.69 E-value=1.6e+02 Score=23.27 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018876 166 PSINTFNILLDSYGKAGHFEKMSAVMEYMQK 196 (349)
Q Consensus 166 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (349)
.+..+...+.-++...|+...+..+++.+..
T Consensus 130 ~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 130 QDPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp SSHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 3555555555555556666666666666543
No 462
>PRK12798 chemotaxis protein; Reviewed
Probab=43.69 E-value=2.2e+02 Score=24.70 Aligned_cols=151 Identities=13% Similarity=0.009 Sum_probs=71.1
Q ss_pred cCchHHHHHHHHHHhccCCCcchhhHHHHHHH-HHccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHH
Q 018876 111 AKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA-FGNSGQIDTMEKCYEKFQSAGIQPS----INTFNILLDSYGKAGHFE 185 (349)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 185 (349)
.|+-.++.+.+..+.....++...-+-.|+.+ .....+...|+++|+...-. .|- ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 46666666666666655555555555555544 33445666677777665433 222 222233334445666666
Q ss_pred HHHHHHHHHHhc-CCCCchHH-HHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 018876 186 KMSAVMEYMQKY-HYSWTIVT-YNIVIDAFGRAGD---LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSV 260 (349)
Q Consensus 186 ~a~~~~~~~~~~-~~~~~~~~-~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (349)
++..+-.....+ ...|-..- +..+...+.+.++ .+....++..|.. .--...|..+.+.-.-.|+.+.|...
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 655554433222 11222222 2222223333322 2222222222211 11234566666666666766666665
Q ss_pred HHHHhh
Q 018876 261 LRFIDN 266 (349)
Q Consensus 261 ~~~~~~ 266 (349)
-++...
T Consensus 280 s~~A~~ 285 (421)
T PRK12798 280 SERALK 285 (421)
T ss_pred HHHHHH
Confidence 555544
No 463
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.25 E-value=2.2e+02 Score=24.60 Aligned_cols=174 Identities=11% Similarity=0.021 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc---------CCCcc
Q 018876 64 NTYSILIKSCLKAFAFDKVQALLSDMSTQ--GIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE---------DCEPD 132 (349)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 132 (349)
..+.-+...|...|+++.|.+.|.+...- ..+-.+..|..+|..-.-.|+|..+.....+..+. .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 34666778888999999999999885543 11224456666777777788888877777666543 12233
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHhcCCCC
Q 018876 133 VWTMNCTLRAFGNSGQIDTMEKCYEKFQSAG------IQPSINTFNILLDSYGKAGHFEKMSAV-----MEYMQKYHYSW 201 (349)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~~~ 201 (349)
...+..+.... .++++.|.+.|-...... +.|...+....+.+++.-++-+--..+ |+... ..
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fl----el 304 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFL----EL 304 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHH----hc
Confidence 33333333333 336666665553322211 233333333344444433332222222 22222 22
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCcHHHHHHHH
Q 018876 202 TIVTYNIVIDAFGRAGDLKQMEYLFRLMRSE-----RIKPSCVTLCSLV 245 (349)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~ 245 (349)
.+..+..+...|. +++....++++++... -+.|...+...+|
T Consensus 305 ~Pqlr~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 305 EPQLREILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred ChHHHHHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 4455555555543 5688888888887543 1334444444444
No 464
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.78 E-value=1.2e+02 Score=21.49 Aligned_cols=67 Identities=13% Similarity=-0.003 Sum_probs=29.7
Q ss_pred CcHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhC-CCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 018876 236 PSCVTLCSLVRAYGHAGK---PEKLGSVLRFIDNS-DIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR 302 (349)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 302 (349)
++..+-..+..++.++.+ ..+.+.+++.+.+. .+.-.......|.-++.+.++++.++++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344444444455554443 23344445444431 11111222233444555556666666655555544
No 465
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.26 E-value=2.7e+02 Score=25.37 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=55.3
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHH-ccCChHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHc
Q 018876 245 VRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYG-RLKCFAEMKGVLEVMQQRG---CKPDKVTYRTMVRAYST 320 (349)
Q Consensus 245 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~ 320 (349)
+..+.+.|-+..|.++.+.+....+.-|+.....+|+.|+ +..+++-.+++++.....+ ..||-.--.++...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4455667778888888888777766556777777777764 5667777777777664442 33554433444444544
Q ss_pred cCc---hhhhHHHHHHHHHh
Q 018876 321 NGM---KNHAKEFQDLVEKM 337 (349)
Q Consensus 321 ~g~---~~~a~~~~~~~~~~ 337 (349)
... -+.|...+....++
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKH 448 (665)
T ss_pred cCChhhHHHHHHHHHHHHHh
Confidence 433 23444444444443
No 466
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=42.23 E-value=1.1e+02 Score=21.08 Aligned_cols=75 Identities=11% Similarity=0.037 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHHhcCCCCchh-hHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCChhHHH
Q 018876 6 KQPEKAHELFQAMVDEGCDANTQ-SFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQP-DVNTYSILIKSCLKAFAFDKVQ 83 (349)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 83 (349)
.++..|...+++..+.. +.+.. ....+++-+- =.++-++++++......|+.- +..+-..+++...+.|-++...
T Consensus 3 ~nf~kAl~~L~~a~~~~-~~~~~~~~~g~IqrFE--~t~ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~ 79 (123)
T TIGR01987 3 ESFEQALMQLSDANWFD-LTNDITIIDGAIQKFE--FTFELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDES 79 (123)
T ss_pred HHHHHHHHHHHHHHhcC-ccchHHHHHHHHHHhh--hHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHH
Confidence 35666666666665541 11121 2333333332 224456666665554434321 1333445555555566555433
No 467
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.75 E-value=1e+02 Score=20.34 Aligned_cols=30 Identities=3% Similarity=-0.133 Sum_probs=15.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCchHHH
Q 018876 70 IKSCLKAFAFDKVQALLSDMSTQGIRPNTVTY 101 (349)
Q Consensus 70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 101 (349)
.-.|.+.|+.+.+.+-|+.=... -|...+|
T Consensus 79 GlLys~~G~~e~a~~eFetEKal--FPES~~f 108 (121)
T COG4259 79 GLLYSNSGKDEQAVREFETEKAL--FPESGVF 108 (121)
T ss_pred HHHHhhcCChHHHHHHHHHhhhh--CccchhH
Confidence 33455666666666666554332 3444443
No 468
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=40.69 E-value=86 Score=19.21 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcC
Q 018876 8 PEKAHELFQAMVDEGCDANTQSFTALLSAYGRS 40 (349)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 40 (349)
.+.|..++..+... -+.++..||++...+.+.
T Consensus 13 tEmA~~mL~DLr~d-ekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRDD-EKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcch-hhcChHHHHHHHHHHHHc
Confidence 45566666666543 245677788877766554
No 469
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=39.66 E-value=3.5e+02 Score=25.96 Aligned_cols=313 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHH-HHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChh
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTAL-LSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFD 80 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (349)
+.++|+.+.|.+..++.... .+-...|... ..++.++-+...=.++-.++...-| ..+...|-..+....-..++.
T Consensus 335 ~lR~G~lk~A~~~l~e~~~~--~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l~-~~~~DpyK~AvY~iig~cd~~ 411 (835)
T KOG2168|consen 335 LLRCGDLKAASQFLNENKDF--FEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSELG-RNSTDPYKLAVYKIIGGCDLR 411 (835)
T ss_pred HHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHHhc-cccCChHHHHHHHHHhcCccc
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhccC----------chHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHH
Q 018876 81 KVQALLSDMSTQGIRPNTVTYNTLIDAYGRAK----------MFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQID 150 (349)
Q Consensus 81 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (349)
.-..-+-.-. +...|-.|+-.....+ ..+.-..++...-..-..++.........++.-.|+++
T Consensus 412 ~~~~ev~~ti------ED~LW~kL~~ir~~~~~sds~~~~~~~~~~~~~il~~YG~sYFt~ng~~p~~Yf~~LlLsgqfe 485 (835)
T KOG2168|consen 412 RDLPEVADTI------EDFLWFKLSLIRVDDQGSDSPTDELFLLEDQKDILEAYGESYFTNNGSQPLLYFQVLLLSGQFE 485 (835)
T ss_pred cccHHHHhHH------HHHHHHHHHheeecCCCCcchHHhhhhHHHHHHHHHHhHHHhhccCCCChHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018876 151 TMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWT-IVTYNIVIDAFGRAGDLKQMEYLFRLM 229 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (349)
.|+.++......+ .|.+.+...+.-+.-.+......+-+--+.....++. ..-+..|+.+|.+.=....+...++-.
T Consensus 486 ~AI~fL~~~~~~~--~dAVH~AI~l~~lglL~~~~s~~~~ll~~d~~d~~k~~~lnf~rLi~~Ytk~fe~~d~~~al~y~ 563 (835)
T KOG2168|consen 486 RAIEFLHREEPNR--IDAVHVAIALAELGLLRTSSSTSQELLSIDPNDPPKSRRLNFARLIIAYTKSFEYTDTRVALQYY 563 (835)
T ss_pred HHHHHHHhhcCCc--chhHHHHHHHHHhhhhccCCCCCCcccccCCCCCcccccccHHHHHHHHHHHHHhccchhhhhee
Q ss_pred HhCCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHc--cCChHHHHHHHHHHHhcCCCCC
Q 018876 230 RSERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGR--LKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~p~ 307 (349)
.-....++...-+..+.+.+..=--.+ +.|..+.. .+.||..-...++.-|.. .-...-+.++-++..+.|.
T Consensus 564 ~~lr~~~d~q~~~l~l~~v~~lVl~t~--~~f~~iLG-~i~~dG~r~~G~l~~f~~~~~~~~~i~~~vA~~a~~~G~--- 637 (835)
T KOG2168|consen 564 YLLRLNKDPQGSNLFLKCVCELVLETE--EEFDLILG-KIKPDGSREPGLLDEFLPLIEDLQKIILEVASEADEDGL--- 637 (835)
T ss_pred eeecccCChhHHHHHHHHHHHHHHhcc--ccHHHHhc-ccCCCCCCCcchHhhhccchhhHHHHHHHHHHHHHhcCC---
Q ss_pred HHHHHHHHHHHHccCchhhhHHHHHHH
Q 018876 308 KVTYRTMVRAYSTNGMKNHAKEFQDLV 334 (349)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (349)
|.--|..|...|+++.|.++....
T Consensus 638 ---~~~sI~LY~lag~yd~al~link~ 661 (835)
T KOG2168|consen 638 ---FEDAILLYHLAGDYDKALELINKL 661 (835)
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHH
No 470
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.53 E-value=2.2e+02 Score=23.54 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=38.0
Q ss_pred HHhcCCHHHHHHHH-HHHHhcCCCCch----HHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 018876 178 YGKAGHFEKMSAVM-EYMQKYHYSWTI----VTYNIVIDAFGRAGD-LKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHA 251 (349)
Q Consensus 178 ~~~~~~~~~a~~~~-~~~~~~~~~~~~----~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (349)
..+...+++..... ++|++.++ |++ ..|+.++++---+.+ -.-|.+.++.+ ..|..++.+++..
T Consensus 265 ~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~ 334 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQ 334 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcC
Confidence 33444555555555 44555554 454 346666655332211 11133333333 4678899999999
Q ss_pred CChhhHH
Q 018876 252 GKPEKLG 258 (349)
Q Consensus 252 ~~~~~a~ 258 (349)
|+.+..+
T Consensus 335 g~sEL~L 341 (412)
T KOG2297|consen 335 GQSELEL 341 (412)
T ss_pred ChHHHHH
Confidence 9877543
No 471
>PRK09857 putative transposase; Provisional
Probab=39.37 E-value=2.2e+02 Score=23.42 Aligned_cols=66 Identities=6% Similarity=0.054 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhcCCCCC
Q 018876 241 LCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQRGCKPD 307 (349)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 307 (349)
+..++......++.++..++++.+.+.. +......-.+..-+...|.-+++.++...|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3344444445566555566665555432 12222333455555666666677778888888777544
No 472
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=39.10 E-value=1.8e+02 Score=22.49 Aligned_cols=49 Identities=8% Similarity=0.090 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhCCCCC----c-hHHHHHHHHHHhccCchHHHHHHHHHHhccC
Q 018876 80 DKVQALLSDMSTQGIRP----N-TVTYNTLIDAYGRAKMFAEMELTLVKMLSED 128 (349)
Q Consensus 80 ~~a~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 128 (349)
..|.+.|.+.....-.| + ....-.+.....+.|+.++|.+.|.++...+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34555665554432111 1 1222233445556666666666666666543
No 473
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.63 E-value=1.3e+02 Score=20.79 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018876 151 TMEKCYEKFQSAGIQP-SINTFNILLDSYGKAGHFEKMSAVMEY 193 (349)
Q Consensus 151 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (349)
.+.++|..|...|+-. .+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5666666666655432 344556666666666666666666654
No 474
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.51 E-value=2.5e+02 Score=23.92 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=29.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHh
Q 018876 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
+...+|++....++ .+. +--+.++..+...+...|+.+.|.+++++..
T Consensus 20 ~v~~~Dp~~l~~ll---~~~--PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 20 AVQSHDPNALINLL---QKN--PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHccCHHHHHHHH---HHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444555444443 222 3355666777777888888888777777653
No 475
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=37.89 E-value=2.3e+02 Score=23.23 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=16.0
Q ss_pred CchHHHHHHHHHHHhcCChHHHHH
Q 018876 201 WTIVTYNIVIDAFGRAGDLKQMEY 224 (349)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~ 224 (349)
-|+..|..+..+|.-.|+...+.+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHH
Confidence 467777777777777776555443
No 476
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=37.68 E-value=4.6e+02 Score=26.70 Aligned_cols=154 Identities=8% Similarity=-0.060 Sum_probs=92.0
Q ss_pred HHccCCHHHHHH------HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCchHHHHHH
Q 018876 143 FGNSGQIDTMEK------CYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQ-------KYHYSWTIVTYNIV 209 (349)
Q Consensus 143 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l 209 (349)
....|.+.++.+ ++......-.+.....|..+...+.+.++.++|...-.... ...-.-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 444555665555 44432222224456678888888899999999887755431 11112234556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHhhC-----C--CCchHHH
Q 018876 210 IDAFGRAGDLKQMEYLFRLMRSE-------RIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFIDNS-----D--IMLDTVF 275 (349)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~ 275 (349)
.......++...|...+.+.... ..+|...+++.+-..+...++.+.|.+..+.+... + .-.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55555666777777777665432 12444445555544455557888888888776542 1 1235567
Q ss_pred HHHHHHHHHccCChHHHHHHH
Q 018876 276 FNCLVDAYGRLKCFAEMKGVL 296 (349)
Q Consensus 276 ~~~li~~~~~~g~~~~a~~~~ 296 (349)
+..+.+.+...+++..|....
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 777777777777777665443
No 477
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.81 E-value=1.1e+02 Score=19.49 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhcc
Q 018876 84 ALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSE 127 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 127 (349)
++|+-....|+..|...|..++..+.-.=..+...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 66777777777777777777777766665666666666666543
No 478
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=36.81 E-value=64 Score=19.80 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=21.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhcc
Q 018876 74 LKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRA 111 (349)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (349)
.-.++.+.+.+++++....|.+|.......+..+..+.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34466677777777777666666555555555554443
No 479
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.72 E-value=1.1e+02 Score=19.37 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 018876 11 AHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKV 82 (349)
Q Consensus 11 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 82 (349)
...+++.+.+.|+ .+....-..-+...+.+++.++++.+... ...+|..+..++...|...-|
T Consensus 18 ~~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~R-----G~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETR-----GKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhcCchHHH
Confidence 3457788888763 22222233334556788899999988876 346788888888777765544
No 480
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.69 E-value=2.1e+02 Score=22.61 Aligned_cols=236 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCCCCCChHHHHHHHHHHHhc-----CCCCchhhHHHHHHHHHcCCChhHHHHHHHHhh---cCCCCCCCHHHHHHHHHH
Q 018876 1 MLGKCKQPEKAHELFQAMVDE-----GCDANTQSFTALLSAYGRSGLFDKAFSLLEHMK---NTPDCQPDVNTYSILIKS 72 (349)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~ 72 (349)
+++-.+++++|.++|.+.... ....--.+|-.....+.+.|.-++|-..|-++- +......-+.....-+..
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEI 102 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCchHHHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHHHHccCCHHHH
Q 018876 73 CLKAFAFDKVQALLSDMSTQGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRAFGNSGQIDTM 152 (349)
Q Consensus 73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 152 (349)
|...|++..|-....++-+. ...+..-+..-|..|-..+++=...+.- ......+.-+...-+..+++.+|
T Consensus 103 yt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~--------ssANKC~lKvA~yaa~leqY~~A 173 (288)
T KOG1586|consen 103 YTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESV--------SSANKCLLKVAQYAAQLEQYSKA 173 (288)
T ss_pred HHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhh--------hhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhcCCCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 018876 153 EKCYEKFQSAGIQPSINTFNIL------LDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLF 226 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 226 (349)
.++|+++....+..+..-|..- .-++.-..+.-.+...+++..+..+.....-=.-++.-+...-+-+....+-
T Consensus 174 i~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~ft 253 (288)
T KOG1586|consen 174 IDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFT 253 (288)
T ss_pred HHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHH
Q ss_pred HHHHhCCCCCcHHHHHHHH
Q 018876 227 RLMRSERIKPSCVTLCSLV 245 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~ 245 (349)
+...+-........|.+-+
T Consensus 254 e~vkefDsisrLD~W~tti 272 (288)
T KOG1586|consen 254 EVVKEFDSISRLDQWKTTI 272 (288)
T ss_pred HHHHhhhccchHHHHHHHH
No 481
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=36.60 E-value=1.9e+02 Score=22.06 Aligned_cols=111 Identities=7% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHHhc----CCCCCHHHHH--
Q 018876 239 VTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQQR----GCKPDKVTYR-- 312 (349)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~-- 312 (349)
...+.++..|...|+++.|.+.|..+......-=...|..=+..+.+.+.-....+.++.|... ...++...+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Q ss_pred ----------------------HHHHHHHccCchhhhHHHHHHHHHhHHhhhccCCCCC
Q 018876 313 ----------------------TMVRAYSTNGMKNHAKEFQDLVEKMDETCLAMKRPDF 349 (349)
Q Consensus 313 ----------------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 349 (349)
.++..-.+....+++.++.+++.++-.++--+..|.+
T Consensus 122 ~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el 180 (199)
T PF04090_consen 122 APVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGEL 180 (199)
T ss_pred cccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHH
No 482
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=36.40 E-value=2.1e+02 Score=22.53 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=44.7
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCchhhHHHHHHHHHcCCChhHHHHHHHHhhcCC
Q 018876 2 LGKCKQPEKAHELFQAMVDEGCDANTQSFTALLSAYGRSGLFDKAFSLLEHMKNTP 57 (349)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 57 (349)
+.+.|+.+.|.+++.+..+. .+.....|..+....-+.|+++.|.+-|++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 45678888999999988876 24567788888888889999999999998888763
No 483
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.36 E-value=2.2e+02 Score=22.59 Aligned_cols=104 Identities=6% Similarity=0.095 Sum_probs=68.0
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------CCCCchHHHHHHH
Q 018876 143 FGNSGQIDTMEKCYEKFQSAGIQPSINTFNILLDSYGKAGHFEKMSAVMEYMQKY------------HYSWTIVTYNIVI 210 (349)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~l~ 210 (349)
|.+..+.+-..++.+-....+++-+..-..+++ +...||...|...++.-... --.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 445555444444555555556665555555554 45678888888877654321 1256777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876 211 DAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
..| ..+++++|.+++.++.+.|..|. ...+++.+.+-.
T Consensus 247 ~~~-~~~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~K~ 284 (333)
T KOG0991|consen 247 QAC-LKRNIDEALKILAELWKLGYSPE-DIITTLFRVVKN 284 (333)
T ss_pred HHH-HhccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHh
Confidence 765 45789999999999999998775 455666666543
No 484
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=36.11 E-value=2.5e+02 Score=23.16 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 018876 184 FEKMSAVMEYMQKYHY----SWTIVTYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGS 259 (349)
Q Consensus 184 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (349)
.+.|.+.|+.....+. ..++.....+.....+.|+.+.-..+++.... .++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4566667766665311 33555556666666677775555555555443 2355666777777777888888788
Q ss_pred HHHHHhhCC
Q 018876 260 VLRFIDNSD 268 (349)
Q Consensus 260 ~~~~~~~~~ 268 (349)
+++.+...+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 888777754
No 485
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=36.03 E-value=1e+02 Score=21.82 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=23.0
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhccCCCcchhhHHHHHHH
Q 018876 100 TYNTLIDAYGRAKMFAEMELTLVKMLSEDCEPDVWTMNCTLRA 142 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (349)
|...++.+. +.|-..+...+++++.+.|...+...|+.+++-
T Consensus 112 tlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 112 TLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred hhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 333333333 345555555666666666666666666655543
No 486
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.03 E-value=2.1e+02 Score=22.21 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=21.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 018876 275 FFNCLVDAYGRLKCFAEMKGVLEVMQQRG 303 (349)
Q Consensus 275 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 303 (349)
+.-.+.....+.|++++|.+.|..+...+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34455666777888888888888887764
No 487
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.89 E-value=3.2e+02 Score=24.43 Aligned_cols=32 Identities=3% Similarity=-0.014 Sum_probs=19.5
Q ss_pred CCCCCchHHHHHHHHHHhccCchHHHHHHHHHHh
Q 018876 92 QGIRPNTVTYNTLIDAYGRAKMFAEMELTLVKML 125 (349)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 125 (349)
.|+..+......++.. ..|+...|+.+++++.
T Consensus 196 Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 196 ENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAI 227 (484)
T ss_pred cCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHH
Confidence 4555566665555433 3577777777777654
No 488
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.88 E-value=1.4e+02 Score=20.09 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=17.2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHhc
Q 018876 100 TYNTLIDAYGRAKMFAEMELTLVKMLS 126 (349)
Q Consensus 100 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 126 (349)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355666666666666666666666655
No 489
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=35.73 E-value=3.3e+02 Score=24.57 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=27.6
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 018876 44 DKAFSLLEHMKNTPDCQPDVNTYSILIKSCLKAFAFDKVQALLSDMSTQG 93 (349)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 93 (349)
+.....+..+....++.-+...+..+.+ ...|...++..+++++...|
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHcc
Confidence 3444555555555555555555544443 35566677777777776654
No 490
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=35.43 E-value=2.8e+02 Score=26.12 Aligned_cols=33 Identities=9% Similarity=-0.001 Sum_probs=18.0
Q ss_pred CCCCcHHHHHHHHHHHHhcCC----hhhHHHHHHHHh
Q 018876 233 RIKPSCVTLCSLVRAYGHAGK----PEKLGSVLRFID 265 (349)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~ 265 (349)
|.+.|...|..|+.++....+ .+++.++++.++
T Consensus 212 gyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK 248 (677)
T PF05664_consen 212 GYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLK 248 (677)
T ss_pred CCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHH
Confidence 556666666666666554333 344444554443
No 491
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.26 E-value=3e+02 Score=23.93 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=20.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 018876 216 AGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGH 250 (349)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (349)
..+.+.|...+..|.+.|..|....-..++.++-.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46777777777777777766654443333344333
No 492
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.15 E-value=2.3e+02 Score=22.52 Aligned_cols=119 Identities=9% Similarity=-0.009 Sum_probs=75.1
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH-HHHHHHHHhcCCh
Q 018876 142 AFGNSGQIDTMEKCYEKFQSAGIQPSI-NTFNILLDSYGKAGHFEKMSAVMEYMQKYHYSWTIVTY-NIVIDAFGRAGDL 219 (349)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~ 219 (349)
-|.....++.|...|.+.+.. .|+. .-|+.=+.++.+..+++.+..--....+. .|+..-- -.+..++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 355666788899888777765 5555 44566677788888888887766666654 3454433 3445566677889
Q ss_pred HHHHHHHHHHHh----CCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018876 220 KQMEYLFRLMRS----ERIKPSCVTLCSLVRAYGHAGKPEKLGSVLRFI 264 (349)
Q Consensus 220 ~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (349)
+.|+..+.+... ..+.+-......|..+--..-...+..++.+..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 999999888743 334444455555555444444444555555443
No 493
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.49 E-value=1.4e+02 Score=19.86 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=8.9
Q ss_pred HHHHhccCchHHHHHHHHHH
Q 018876 105 IDAYGRAKMFAEMELTLVKM 124 (349)
Q Consensus 105 ~~~~~~~~~~~~a~~~~~~~ 124 (349)
+..|...++.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444445555555544443
No 494
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.35 E-value=3.1e+02 Score=23.81 Aligned_cols=134 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHhcCChHHHHHHHHH-------HHhCCCCCcH
Q 018876 167 SINTFNILLDSYGKAGHFEKMSAVMEYMQKY-HYSWTIVTYNIVIDAFGRAGDLKQMEYLFRL-------MRSERIKPSC 238 (349)
Q Consensus 167 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~ 238 (349)
|...|..=--+-.+..-.....+-...+.+. .-.++....-.++..+....++.+..+..+. ..+.|..|-.
T Consensus 38 DEFvYQfqsfc~yr~~~~~~~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~ 117 (404)
T PF10255_consen 38 DEFVYQFQSFCQYRSKLKKKTEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLY 117 (404)
T ss_pred HHHHHHhhhHHHHhhhccCCCHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHH
Q ss_pred -----HHHHHHHHHHHhcCChhhHHHHHHHHh-------hCCCCchHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 018876 239 -----VTLCSLVRAYGHAGKPEKLGSVLRFID-------NSDIMLDTVFFNCLVDAYGRLKCFAEMKGVLEVMQ 300 (349)
Q Consensus 239 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 300 (349)
.+...+++..+-.||+..|+++++.+. ..-+.-...++-.+.-+|.-.+++.+|.++|....
T Consensus 118 ~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 118 KMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=34.26 E-value=1.9e+02 Score=21.35 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=8.9
Q ss_pred ChHHHHHHHHHHHhCCCCC
Q 018876 218 DLKQMEYLFRLMRSERIKP 236 (349)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~ 236 (349)
+.+.|+-.+..|++.|-.|
T Consensus 3 D~dAAlywlarml~~GeDp 21 (168)
T PF12002_consen 3 DPDAALYWLARMLEGGEDP 21 (168)
T ss_dssp -HHHHHHHHHHHHHTT--H
T ss_pred ChHHHHHHHHHHHHcCCcH
Confidence 4455555555665555333
No 496
>PRK09857 putative transposase; Provisional
Probab=34.12 E-value=2.6e+02 Score=22.92 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=11.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018876 244 LVRAYGHAGKPEKLGSVLRFIDNSDIM 270 (349)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (349)
+.+-+...|.-+++.++...|...|+.
T Consensus 246 iAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 246 IAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333334334444445555444443
No 497
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.00 E-value=5.2e+02 Score=26.32 Aligned_cols=158 Identities=11% Similarity=-0.036 Sum_probs=95.3
Q ss_pred HhcCCHHHHHH------HHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHH-------hCCCCCcHHHHHHHH
Q 018876 179 GKAGHFEKMSA------VMEYMQKYHYSWTIVTYNIVIDAFGRAGDLKQMEYLFRLMR-------SERIKPSCVTLCSLV 245 (349)
Q Consensus 179 ~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~ 245 (349)
...|.+.++.+ ++......--+.....|..+...+.+.++.++|...-.... ....+-+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 34455665555 55422222123356778888888889999999887655432 222233445566666
Q ss_pred HHHHhcCChhhHHHHHHHHhhC-----CC-Cch-HHHHHHHHHHHHccCChHHHHHHHHHHHhc-----CC--CCCHHHH
Q 018876 246 RAYGHAGKPEKLGSVLRFIDNS-----DI-MLD-TVFFNCLVDAYGRLKCFAEMKGVLEVMQQR-----GC--KPDKVTY 311 (349)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~--~p~~~~~ 311 (349)
..+...++...|...+.+.... +. .|. ..+++.+-..+...++++.|.++++.+... |. -++..++
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 6666666777777777665431 11 333 334444444455568899999998888764 21 1345667
Q ss_pred HHHHHHHHccCchhhhHHHHHHHHH
Q 018876 312 RTMVRAYSTNGMKNHAKEFQDLVEK 336 (349)
Q Consensus 312 ~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (349)
..+.+.+...+++..|....+.-..
T Consensus 1103 ~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 7777777777777777665544333
No 498
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.88 E-value=2.1e+02 Score=21.74 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 018876 206 YNIVIDAFGRAGDLKQMEYLFRLMR 230 (349)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (349)
++..+-.....|++++|..-++.+.
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444444556666777766666554
No 499
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=33.03 E-value=4.4e+02 Score=25.17 Aligned_cols=90 Identities=10% Similarity=0.064 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHccCC-----hHHHHHHHHHHHhcCCCCCHHHH
Q 018876 237 SCVTLCSLVRAYGHAGKPEKLGSVLRFIDNSDIMLDTVFFNCLVDAYGRLKC-----FAEMKGVLEVMQQRGCKPDKVTY 311 (349)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~p~~~~~ 311 (349)
.....+.+++. ++.++++.|...+..|.+.|..|....-..++.+.-.-|. ..-|...++.....|++--....
T Consensus 258 hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~l 336 (725)
T PRK13341 258 HFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPL 336 (725)
T ss_pred CHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHH
Confidence 33444444443 3456777788877777777766655444444444433332 12233344444455653223333
Q ss_pred HHHHHHHHccCchhhh
Q 018876 312 RTMVRAYSTNGMKNHA 327 (349)
Q Consensus 312 ~~l~~~~~~~g~~~~a 327 (349)
....-.++.+-+-..+
T Consensus 337 aq~~~~la~apKSns~ 352 (725)
T PRK13341 337 AQAALYLATAPKSNSV 352 (725)
T ss_pred HHHHHHHHcCCCccHH
Confidence 3333333444444444
No 500
>COG0819 TenA Putative transcription activator [Transcription]
Probab=33.01 E-value=2.4e+02 Score=22.00 Aligned_cols=102 Identities=8% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhcCChhhHHHHH-----------HHHhhCCCCchHHHHHHHHHHHHccCChHHHHHH
Q 018876 227 RLMRSERIKPSCVTLCSLVRAYGHAGKPEKLGSVL-----------RFIDNSDIMLDTVFFNCLVDAYGRLKCFAEMKGV 295 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-----------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 295 (349)
+.+.+....|....|+..+...+..|++......+ ..+.+....+....|...|+.|....-.+.+..+
T Consensus 98 ~~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~ 177 (218)
T COG0819 98 DELLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEEL 177 (218)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHH
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCchhhhH
Q 018876 296 LEVMQQRGCKPDKVTYRTMVRAYSTNGMKNHAK 328 (349)
Q Consensus 296 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 328 (349)
.+.+-+.+-.-+..-+..+...+...-+.+.+.
T Consensus 178 ~~~ld~~~~~~~~~~~~~l~~iF~~ss~~E~~F 210 (218)
T COG0819 178 EALLDSLAENSSEEELEKLKQIFLTASRFELAF 210 (218)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Done!