Query 018877
Match_columns 349
No_of_seqs 265 out of 1645
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:47:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 1.9E-76 4.2E-81 535.5 22.0 293 7-328 68-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 4.3E-71 9.4E-76 523.3 29.7 295 6-328 34-339 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 3E-68 6.4E-73 517.9 28.6 290 8-328 167-487 (489)
4 PTZ00200 cysteine proteinase; 100.0 2.3E-67 5E-72 510.2 27.8 289 7-328 123-444 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 6.1E-67 1.3E-71 491.6 25.3 279 22-330 39-324 (325)
6 cd02620 Peptidase_C1A_Cathepsi 100.0 2.9E-61 6.3E-66 437.0 24.2 228 94-327 1-236 (236)
7 cd02621 Peptidase_C1A_Cathepsi 100.0 1.9E-60 4.1E-65 433.9 23.3 223 93-330 1-243 (243)
8 cd02698 Peptidase_C1A_Cathepsi 100.0 8.3E-60 1.8E-64 428.2 24.4 224 93-330 1-239 (239)
9 PTZ00049 cathepsin C-like prot 100.0 3E-57 6.6E-62 449.7 24.8 241 90-332 378-679 (693)
10 cd02248 Peptidase_C1A Peptidas 100.0 5.5E-57 1.2E-61 402.2 22.4 205 94-325 1-208 (210)
11 PTZ00364 dipeptidyl-peptidase 100.0 4.2E-56 9.1E-61 437.5 22.8 223 90-329 202-459 (548)
12 PF00112 Peptidase_C1: Papain 100.0 8.5E-55 1.8E-59 389.7 19.0 212 93-328 1-219 (219)
13 KOG1544 Predicted cysteine pro 100.0 5.8E-53 1.3E-57 377.6 7.4 297 27-329 142-460 (470)
14 smart00645 Pept_C1 Papain fami 100.0 7.4E-50 1.6E-54 345.8 18.0 168 93-325 1-171 (174)
15 cd02619 Peptidase_C1 C1 Peptid 100.0 6.8E-47 1.5E-51 339.2 20.9 197 96-315 1-213 (223)
16 PTZ00462 Serine-repeat antigen 100.0 5E-46 1.1E-50 379.2 22.5 227 103-335 538-787 (1004)
17 COG4870 Cysteine protease [Pos 100.0 9.8E-30 2.1E-34 233.9 7.8 207 90-319 96-318 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 2.9E-24 6.2E-29 207.9 14.5 203 109-314 54-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.7 5.4E-16 1.2E-20 150.5 13.4 205 109-314 55-400 (438)
20 PF08246 Inhibitor_I29: Cathep 98.9 2.3E-09 5.1E-14 75.3 4.3 55 10-65 1-58 (58)
21 COG3579 PepC Aminopeptidase C 98.8 2.1E-08 4.6E-13 92.0 10.7 80 233-313 296-401 (444)
22 smart00848 Inhibitor_I29 Cathe 98.4 1.6E-07 3.4E-12 65.5 1.6 54 10-64 1-57 (57)
23 PF08127 Propeptide_C1: Peptid 98.0 8.2E-06 1.8E-10 52.6 3.5 40 33-75 1-40 (41)
24 KOG4128 Bleomycin hydrolases a 97.6 6.9E-05 1.5E-09 69.1 4.5 79 109-187 62-169 (457)
25 PF05543 Peptidase_C47: Stapho 96.9 0.011 2.4E-07 50.3 10.2 121 114-301 18-146 (175)
26 PF13529 Peptidase_C39_2: Pept 96.9 0.014 2.9E-07 47.6 10.4 58 232-299 87-144 (144)
27 PF09778 Guanylate_cyc_2: Guan 91.4 0.74 1.6E-05 40.8 7.0 62 232-297 111-180 (212)
28 PF14399 Transpep_BrtH: NlpC/p 89.7 0.96 2.1E-05 42.5 6.7 56 234-297 78-133 (317)
29 COG4990 Uncharacterized protei 89.7 0.8 1.7E-05 39.2 5.4 49 231-300 120-168 (195)
30 PF12385 Peptidase_C70: Papain 89.0 7.8 0.00017 32.6 10.6 37 233-284 97-133 (166)
31 cd02549 Peptidase_C39A A sub-f 76.1 9 0.00019 30.9 6.2 45 237-299 70-114 (141)
32 cd00044 CysPc Calpains, domain 67.6 12 0.00026 35.3 5.7 28 273-301 234-263 (315)
33 PF01640 Peptidase_C10: Peptid 53.0 58 0.0012 28.3 7.0 50 235-310 141-192 (192)
34 KOG4621 Uncharacterized conser 34.5 1.1E+02 0.0024 24.9 5.2 62 233-297 58-131 (167)
35 smart00230 CysPc Calpain-like 32.6 1.2E+02 0.0026 28.6 6.2 28 273-301 226-255 (318)
36 PF09028 Mac-1: Mac 1; InterP 21.2 1.6E+02 0.0035 27.9 4.6 39 234-288 233-271 (333)
37 TIGR02608 delta_60_rpt delta-6 20.5 2.9E+02 0.0063 18.8 5.0 37 277-313 13-54 (55)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-76 Score=535.49 Aligned_cols=293 Identities=29% Similarity=0.555 Sum_probs=243.9
Q ss_pred HHHHHHHHHHhhhh-cccccccccccccHHHHH--HHHHhCCCCCeEEecCCCCCCCCHHHHHH-hhCCCCCCCCCcCCC
Q 018877 7 RSNWMWCCLQTFAE-GVVSKLKLDSHILQDSII--KEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKPTPKGLLLGV 82 (349)
Q Consensus 7 ~~~~~~f~~~~~~~-~~~~e~~~r~~~~~~~~i--~~~n~~~~~~~~~~~n~~fsd~t~eE~~~-~~~~~~~~~~~~~~~ 82 (349)
-..|..|..++.|. .+.+|...|+.+|..+++ ++++++...|-+.|+| +|||||+|||++ +++.+..........
T Consensus 68 ~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvt-qFSDlT~eEFkk~~l~~~~~~~~~~~~~ 146 (372)
T KOG1542|consen 68 EDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVT-QFSDLTEEEFKKIYLGVKRRGSKLPGDA 146 (372)
T ss_pred HHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCcc-chhhcCHHHHHHHhhccccccccCcccc
Confidence 35678888888887 788999999999999864 4566644458888999 999999999998 555544211110001
Q ss_pred CccccCCCCCCCCceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccCCHHHHHHhcCCCCCCCCC
Q 018877 83 PVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCD 162 (349)
Q Consensus 83 ~~~~~~~~~~lP~s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~ 162 (349)
..........||.+||||++ |+||||||||+||||||||+++++|++++|++|++++||||+|+||+. +++||+
T Consensus 147 ~~~~~~~~~~lP~~fDWR~k----gaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~--~d~gC~ 220 (372)
T KOG1542|consen 147 AEAPIEPGESLPESFDWRDK----GAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS--CDNGCN 220 (372)
T ss_pred ccCcCCCCCCCCcccchhcc----CCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC--cCCcCC
Confidence 11112344689999999998 899999999999999999999999999999999999999999999995 789999
Q ss_pred CCchHHHHHHHHH-cCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeE-eCCCHHHHHHH
Q 018877 163 GGYPISAWRYFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAE 240 (349)
Q Consensus 163 GG~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~ 240 (349)
||.+..||+|+++ .|+..|++|||.+.. ...|..... ..++.|..|. ++.|+++|.+.
T Consensus 221 GGl~~nA~~~~~~~gGL~~E~dYPY~g~~----------------~~~C~~~~~----~~~v~I~~f~~l~~nE~~ia~w 280 (372)
T KOG1542|consen 221 GGLMDNAFKYIKKAGGLEKEKDYPYTGKK----------------GNQCHFDKS----KIVVSIKDFSMLSNNEDQIAAW 280 (372)
T ss_pred CCChhHHHHHHHHhCCccccccCCccccC----------------CCccccchh----hceEEEeccEecCCCHHHHHHH
Confidence 9999999999655 689999999997751 125665442 4567888888 88899999999
Q ss_pred HHhCCCEEEEEEcccccccCCCceeec---CCCCccCCcEEEEEEeCCCCC-CccEEEEEccCCCCCCCCceEEEEecCC
Q 018877 241 IYKNGPVEVSFTVYEDFAHYKSGVYKH---ITGDVMGGHAVKLIGWGTSDD-GEDYWILANQWNRSWGADGYFKIKRGSN 316 (349)
Q Consensus 241 l~~~gPV~v~i~v~~~f~~y~~Giy~~---~~~~~~~~Hav~IVGyg~~~~-g~~ywivkNSWG~~WG~~Gy~~i~~g~n 316 (349)
|.++|||+|+|++ ..++.|.+||..+ .|....++|+||||||| ... .++|||||||||++||++||+|+.||.|
T Consensus 281 Lv~~GPi~vgiNa-~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG-~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N 358 (372)
T KOG1542|consen 281 LVTFGPLSVGINA-KPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYG-SSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSN 358 (372)
T ss_pred HHhcCCeEEEEch-HHHHHhcccccCCCcccCCccccCceEEEEeec-CCCCCCceEEEECCccccccccceEEEecccc
Confidence 9999999999996 5799999999987 34455589999999999 655 8999999999999999999999999999
Q ss_pred ccccccceeEee
Q 018877 317 ECGIEEDVVAGL 328 (349)
Q Consensus 317 ~cgI~~~~~~~~ 328 (349)
.|||++.+.+++
T Consensus 359 ~CGi~~mvss~~ 370 (372)
T KOG1542|consen 359 ACGIADMVSSAA 370 (372)
T ss_pred ccccccchhhhh
Confidence 999999988654
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=4.3e-71 Score=523.25 Aligned_cols=295 Identities=22% Similarity=0.447 Sum_probs=234.7
Q ss_pred hHHHHHHHHHHhhhh-cccccccccccccHHH--HHHHHHhCCCCCeEEecCCCCCCCCHHHHHH-hhCCCC-CCCCCc-
Q 018877 6 IRSNWMWCCLQTFAE-GVVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKP-TPKGLL- 79 (349)
Q Consensus 6 ~~~~~~~f~~~~~~~-~~~~e~~~r~~~~~~~--~i~~~n~~~~~~~~~~~n~~fsd~t~eE~~~-~~~~~~-~~~~~~- 79 (349)
+...|+.|+++|+|. .+.+|..+|+.+|.++ .|++||++ +.+|++++| +|+|||.|||++ +++... ......
T Consensus 34 ~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~~~~lg~N-~FaDlT~eEf~~~~l~~~~~~~~~~~~ 111 (348)
T PTZ00203 34 AAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQAR-NPHARFGIT-KFFDLSEAEFAARYLNGAAYFAAAKQH 111 (348)
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEecc-ccccCCHHHHHHHhcCCCccccccccc
Confidence 456799999999998 5667888999999996 68899974 569999999 999999999997 443221 110100
Q ss_pred CCCCcccc-CCCCCCCCceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccCCHHHHHHhcCCCCC
Q 018877 80 LGVPVKTH-DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCG 158 (349)
Q Consensus 80 ~~~~~~~~-~~~~~lP~s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~~~~~lS~q~l~dc~~~~~~ 158 (349)
........ ....+||++||||++ |+++||||||.||||||||++++||++++++++..+.||+|+|+||+. .+
T Consensus 112 ~~~~~~~~~~~~~~lP~~~DWR~~----g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~--~~ 185 (348)
T PTZ00203 112 AGQHYRKARADLSAVPDAVDWREK----GAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH--VD 185 (348)
T ss_pred ccccccccccccccCCCCCcCCcC----CCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC--CC
Confidence 00000110 112368999999987 889999999999999999999999999999999999999999999986 36
Q ss_pred CCCCCCchHHHHHHHHHc---CcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeE-eCCCH
Q 018877 159 DGCDGGYPISAWRYFVHH---GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDP 234 (349)
Q Consensus 159 ~gC~GG~~~~a~~~~~~~---Gi~~e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~ 234 (349)
.||+||++..||+|+.++ |+++|++|||.+..+ . .+ .|..... ......+.+|. +..++
T Consensus 186 ~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~-~---------~~----~C~~~~~---~~~~~~i~~~~~i~~~e 248 (348)
T PTZ00203 186 NGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNG-D---------VP----ECSNSSE---LAPGARIDGYVSMESSE 248 (348)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCC-C---------CC----cCCCCcc---cccceEecceeecCcCH
Confidence 799999999999999864 588999999965421 0 01 2332110 01123566666 56678
Q ss_pred HHHHHHHHhCCCEEEEEEcccccccCCCceeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEec
Q 018877 235 EDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRG 314 (349)
Q Consensus 235 ~~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g 314 (349)
++|+++|+++|||+|+|++. +|++|++|||.. +.....+|||+||||| +++|++|||||||||++||++|||||+||
T Consensus 249 ~~~~~~l~~~GPv~v~i~a~-~f~~Y~~GIy~~-c~~~~~nHaVliVGYG-~~~g~~YWiikNSWG~~WGe~GY~ri~rg 325 (348)
T PTZ00203 249 RVMAAWLAKNGPISIAVDAS-SFMSYHSGVLTS-CIGEQLNHGVLLVGYN-MTGEVPYWVIKNSWGEDWGEKGYVRVTMG 325 (348)
T ss_pred HHHHHHHHhCCCEEEEEEhh-hhcCccCceeec-cCCCCCCeEEEEEEEe-cCCCceEEEEEcCCCCCcCcCceEEEEcC
Confidence 89999999999999999984 899999999985 3333469999999999 67889999999999999999999999999
Q ss_pred CCccccccceeEee
Q 018877 315 SNECGIEEDVVAGL 328 (349)
Q Consensus 315 ~n~cgI~~~~~~~~ 328 (349)
.|.|||++.++.+.
T Consensus 326 ~n~Cgi~~~~~~~~ 339 (348)
T PTZ00203 326 VNACLLTGYPVSVH 339 (348)
T ss_pred CCcccccceEEEEe
Confidence 99999999988763
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=3e-68 Score=517.93 Aligned_cols=290 Identities=26% Similarity=0.495 Sum_probs=230.4
Q ss_pred HHHHHHHHHhhhh-cccccccccccccHHH--HHHHHHhCCCCCeEEecCCCCCCCCHHHHHH-hhCCCCC-CCCC-c--
Q 018877 8 SNWMWCCLQTFAE-GVVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKH-LLGVKPT-PKGL-L-- 79 (349)
Q Consensus 8 ~~~~~f~~~~~~~-~~~~e~~~r~~~~~~~--~i~~~n~~~~~~~~~~~n~~fsd~t~eE~~~-~~~~~~~-~~~~-~-- 79 (349)
..|..|+++|.|. .+.+|..+|+.+|.++ .|++||+..+.+|++++| +|+|||.|||++ +++.... .... .
T Consensus 167 ~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiN-qFsDlT~EEF~~~~l~~~~~~~~~~~~~~ 245 (489)
T PTZ00021 167 NSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMN-RFGDLSFEEFKKKYLTLKSFDFKSNGKKS 245 (489)
T ss_pred HHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEecc-ccccCCHHHHHHHhccccccccccccccc
Confidence 6799999999888 6777888999999996 689999866689999999 999999999997 5553311 1100 0
Q ss_pred CC-CCc----cc-cCC-CCCCCCceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccCCHHHHHHh
Q 018877 80 LG-VPV----KT-HDK-SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLAC 152 (349)
Q Consensus 80 ~~-~~~----~~-~~~-~~~lP~s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~~~~~lS~q~l~dc 152 (349)
.. ... .. .+. ...+|.+||||+. +.|+||||||.||||||||++++||++++|+++..+.||+|+|+||
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~----g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDC 321 (489)
T PTZ00021 246 PRVINYDDVIKKYKPKDATFDHAKYDWRLH----NGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDC 321 (489)
T ss_pred cccccccccccccccccccCCccccccccC----CCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhh
Confidence 00 000 00 011 1124999999887 8899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCchHHHHHHHHHc-CcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeE-e
Q 018877 153 CGFLCGDGCDGGYPISAWRYFVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-I 230 (349)
Q Consensus 153 ~~~~~~~gC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~ 230 (349)
+. .+.||+||++..||.|+.+. |+++|++|||.+.. .+ .|..... ...+++.+|. +
T Consensus 322 s~--~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~------------~~----~C~~~~~----~~~~~i~~y~~i 379 (489)
T PTZ00021 322 SF--KNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDT------------PE----LCNIDRC----KEKYKIKSYVSI 379 (489)
T ss_pred cc--CCCCCCCcchHhhhhhhhhccccCcccccCccCCC------------CC----ccccccc----cccceeeeEEEe
Confidence 85 36899999999999999776 89999999996541 11 2221110 1234566666 4
Q ss_pred CCCHHHHHHHHHhCCCEEEEEEcccccccCCCceeecCCCCccCCcEEEEEEeCCCCC----------CccEEEEEccCC
Q 018877 231 NSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDD----------GEDYWILANQWN 300 (349)
Q Consensus 231 ~~~~~~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~~~----------g~~ywivkNSWG 300 (349)
+ +++|+++|+.+|||+|+|++.++|++|++|||.++|+. .++|||+||||| +++ +.+|||||||||
T Consensus 380 ~--~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~~C~~-~~nHAVlIVGYG-~e~~~~~~~~~~~~~~YWIVKNSWG 455 (489)
T PTZ00021 380 P--EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDGECGE-EPNHAVILVGYG-MEEIYNSDTKKMEKRYYYIIKNSWG 455 (489)
T ss_pred c--HHHHHHHHHhcCCeEEEEEeecccccCCCCcCCCCCCC-ccceEEEEEEec-CcCCcccccccCCCCCEEEEECCCC
Confidence 3 47899999999999999999889999999999876544 479999999999 432 247999999999
Q ss_pred CCCCCCceEEEEecC----CccccccceeEee
Q 018877 301 RSWGADGYFKIKRGS----NECGIEEDVVAGL 328 (349)
Q Consensus 301 ~~WG~~Gy~~i~~g~----n~cgI~~~~~~~~ 328 (349)
++|||+|||||+|+. |.|||.+.+.+++
T Consensus 456 t~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~ 487 (489)
T PTZ00021 456 ESWGEKGFIRIETDENGLMKTCSLGTEAYVPL 487 (489)
T ss_pred CCcccCeEEEEEcCCCCCCCCCCCcccceeEe
Confidence 999999999999986 5899999887654
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=2.3e-67 Score=510.23 Aligned_cols=289 Identities=27% Similarity=0.496 Sum_probs=227.7
Q ss_pred HHHHHHHHHHhhhh-cccccccccccccHHH--HHHHHHhCCCCCeEEecCCCCCCCCHHHHHHh-hCCCCCCCC----C
Q 018877 7 RSNWMWCCLQTFAE-GVVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKHL-LGVKPTPKG----L 78 (349)
Q Consensus 7 ~~~~~~f~~~~~~~-~~~~e~~~r~~~~~~~--~i~~~n~~~~~~~~~~~n~~fsd~t~eE~~~~-~~~~~~~~~----~ 78 (349)
.+.|+.|+++|+|. .+..|...|+.+|.++ .|++||. +.+|++++| +|+|||.|||.++ ++...+... .
T Consensus 123 ~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~--~~~y~lgiN-~FsDlT~eEF~~~~~~~~~~~~~~~~~~ 199 (448)
T PTZ00200 123 YLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG--DEPYSKEIN-KFSDLTEEEFRKLFPVIKVPPKSNSTSH 199 (448)
T ss_pred HHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC--cCCeEEecc-ccccCCHHHHHHHhccCCCccccccccc
Confidence 46799999999988 6778888999999996 5777775 358999999 9999999999874 443321100 0
Q ss_pred c--------CCCCc-cc--------cC--C-CCCCCCceecCcCCCCCCCCCcCCCCC-CCCcHHHHHHHHHHHHHHHHH
Q 018877 79 L--------LGVPV-KT--------HD--K-SLKLPKSFDARSAWPQCSTISRILDQG-HCGSCWAFGAVEALSDRFCIH 137 (349)
Q Consensus 79 ~--------~~~~~-~~--------~~--~-~~~lP~s~D~R~~w~~~~~v~pv~dQg-~cGsCwAfA~~~~lE~~~~i~ 137 (349)
. ..... .. .. . ...+|++||||+. +.++|||||| .||||||||+++++|++++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~----g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~ 275 (448)
T PTZ00200 200 NNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRA----DAVTKVKDQGLNCGSCWAFSSVGSVESLYKIY 275 (448)
T ss_pred ccccccccccccccccccccccccccccccccccCCCCccCCCC----CCCCCcccCCCccchHHHHhHHHHHHHHHHHh
Confidence 0 00000 00 00 0 0126999999987 7899999999 999999999999999999999
Q ss_pred cCCCccCCHHHHHHhcCCCCCCCCCCCchHHHHHHHHHcCcCCCCcccCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 018877 138 FGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLW 217 (349)
Q Consensus 138 ~~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~ 217 (349)
++..+.||+|+|+||.. .+.||+||++..|++|++++|+++|++|||.+.. ..|....
T Consensus 276 ~~~~~~LSeQqLvDC~~--~~~GC~GG~~~~A~~yi~~~Gi~~e~~YPY~~~~-----------------~~C~~~~--- 333 (448)
T PTZ00200 276 RDKSVDLSEQELVNCDT--KSQGCSGGYPDTALEYVKNKGLSSSSDVPYLAKD-----------------GKCVVSS--- 333 (448)
T ss_pred cCCCeecCHHHHhhccC--ccCCCCCCcHHHHHHHHhhcCccccccCCCCCCC-----------------CCCcCCC---
Confidence 99999999999999985 3689999999999999999999999999996541 1333221
Q ss_pred ccceeeeeeeeEeCCCHHHHHHHHHhCCCEEEEEEcccccccCCCceeecCCCCccCCcEEEEEEeCCC-CCCccEEEEE
Q 018877 218 RNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTS-DDGEDYWILA 296 (349)
Q Consensus 218 ~~~~~~~i~~~~~~~~~~~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~-~~g~~ywivk 296 (349)
...+.+.+|.+..+.+.++++ +..|||+|+|.++++|++|++|||.++|+.. ++|||+|||||.+ ++|.+|||||
T Consensus 334 --~~~~~i~~y~~~~~~~~l~~~-l~~GPV~v~i~~~~~f~~Yk~GIy~~~C~~~-~nHaV~lVGyG~d~~~g~~YWIIk 409 (448)
T PTZ00200 334 --TKKVYIDSYLVAKGKDVLNKS-LVISPTVVYIAVSRELLKYKSGVYNGECGKS-LNHAVLLVGEGYDEKTKKRYWIIK 409 (448)
T ss_pred --CCeeEecceEecCHHHHHHHH-HhcCCEEEEeecccccccCCCCccccccCCC-CcEEEEEEEecccCCCCCceEEEE
Confidence 122346677644444555554 4689999999998899999999998765543 7999999999953 4688999999
Q ss_pred ccCCCCCCCCceEEEEec---CCccccccceeEee
Q 018877 297 NQWNRSWGADGYFKIKRG---SNECGIEEDVVAGL 328 (349)
Q Consensus 297 NSWG~~WG~~Gy~~i~~g---~n~cgI~~~~~~~~ 328 (349)
||||++||++|||||+|+ .|.|||++.+.+++
T Consensus 410 NSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~ 444 (448)
T PTZ00200 410 NSWGTDWGENGYMRLERTNEGTDKCGILTVGLTPV 444 (448)
T ss_pred cCCCCCcccCeeEEEEeCCCCCCcCCccccceeeE
Confidence 999999999999999995 58999999877654
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-67 Score=491.59 Aligned_cols=279 Identities=40% Similarity=0.726 Sum_probs=232.9
Q ss_pred ccccccccccccHHH--HHHHHHhCCCCCeEEecCCCCCCCCHHHHHHh-hCCCCCCCCCcCCCCccccCCCCCCCCcee
Q 018877 22 VVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQFKHL-LGVKPTPKGLLLGVPVKTHDKSLKLPKSFD 98 (349)
Q Consensus 22 ~~~e~~~r~~~~~~~--~i~~~n~~~~~~~~~~~n~~fsd~t~eE~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lP~s~D 98 (349)
+..|..+|+.+|.++ .++.+|.....+|++++| +|+|+|.+|+++. .+..++.. .. ..........+||++||
T Consensus 39 ~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n-~~~d~~~ee~~~~~~~~~~~~~-~~--~~~~~~~~~~~~p~s~D 114 (325)
T KOG1543|consen 39 DRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVN-QFADLTTEEFKRKKTGKKPPEI-KR--DKFTEKLDGDDLPDSFD 114 (325)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccc-cccccchHHHHHhhccccCccc-cc--cccccccchhhCCCCcc
Confidence 456777788899886 488888865789999999 9999999999984 44433322 11 11111223458999999
Q ss_pred cCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCccCCHHHHHHhcCCCCCCCCCCCchHHHHHHHHHcC
Q 018877 99 ARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHG 177 (349)
Q Consensus 99 ~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~-~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~G 177 (349)
||++| +.++||||||.||||||||++++||++++|+++ ..+.||+|+|+||+.. ++.||+||.+..|++|+.++|
T Consensus 115 wR~~~---~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG~~~~A~~yi~~~G 190 (325)
T KOG1543|consen 115 WRDKG---AVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE-CGDGCNGGEPKNAFKYIKKNG 190 (325)
T ss_pred ccccC---CcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC-CCCCcCCCCHHHHHHHHHHhC
Confidence 99997 557789999999999999999999999999999 9999999999999984 688999999999999999999
Q ss_pred cCC-CCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeE-eCCCHHHHHHHHHhCCCEEEEEEccc
Q 018877 178 VVT-EECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVYE 255 (349)
Q Consensus 178 i~~-e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~~~~~ik~~l~~~gPV~v~i~v~~ 255 (349)
+++ +.+|||.+.. ..|..... ...+.+.++. ++.++++|+.+|+.+|||+|+|++..
T Consensus 191 ~~t~~~~Ypy~~~~-----------------~~C~~~~~----~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~ 249 (325)
T KOG1543|consen 191 GVTECENYPYIGKD-----------------GTCKSNKK----DKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYE 249 (325)
T ss_pred CCCCCcCCCCcCCC-----------------CCccCCCc----cceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehh
Confidence 988 9999997651 14444332 2334444554 77789999999999999999999999
Q ss_pred ccccCCCceeecCCCCc-cCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecCCccccccceeEeecC
Q 018877 256 DFAHYKSGVYKHITGDV-MGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPS 330 (349)
Q Consensus 256 ~f~~y~~Giy~~~~~~~-~~~Hav~IVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~~~~~~~p~ 330 (349)
+|+.|++|||.++++.. .++|||+|||||+ .++.+|||||||||++|||+|||||.||.|.|+|++.+.++.|+
T Consensus 250 ~F~~Y~~GVy~~~~~~~~~~~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 250 DFSLYKGGVYAEEKGDDKEGDHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPIK 324 (325)
T ss_pred hhhhccCceEeCCCCCCCCCCceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCCC
Confidence 99999999999998876 4899999999995 77899999999999999999999999999999999998886554
No 6
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=2.9e-61 Score=436.99 Aligned_cols=228 Identities=55% Similarity=1.106 Sum_probs=186.6
Q ss_pred CCceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCccCCHHHHHHhcCCCCCCCCCCCchHHHHH
Q 018877 94 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISAWR 171 (349)
Q Consensus 94 P~s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~--~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~ 171 (349)
|++||||++|.++..++||+|||.||||||||++++||++++|+++ ..+.||+|+|+||+.. .+.||+||++..||+
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~-~~~gC~GG~~~~a~~ 79 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG-CGDGCNGGYPDAAWK 79 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC-CCCCCCCCCHHHHHH
Confidence 8999999998777667799999999999999999999999999888 7899999999999862 368999999999999
Q ss_pred HHHHcCcCCCCcccCCCCCC-CCC---CCCCCCCCCccccccccccccc-cccceeeeeeeeE-eCCCHHHHHHHHHhCC
Q 018877 172 YFVHHGVVTEECDPYFDSTG-CSH---PGCEPAYPTPKCVRKCVKKNQL-WRNSKHYSISAYR-INSDPEDIMAEIYKNG 245 (349)
Q Consensus 172 ~~~~~Gi~~e~~yPY~~~~~-~~~---~~c~~~~~~~~~~~~c~~~~~~-~~~~~~~~i~~~~-~~~~~~~ik~~l~~~g 245 (349)
|++++|+++|++|||..... |.. ..|. ....|...|...... +.... +.+..+. +..++++||++|+++|
T Consensus 80 ~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~-~~~~~~~~~~~~~~~ik~~l~~~G 155 (236)
T cd02620 80 YLTTTGVVTGGCQPYTIPPCGHHPEGPPPCC---GTPYCTPKCQDGCEKTYEEDK-HKGKSAYSVPSDETDIMKEIMTNG 155 (236)
T ss_pred HHHhcCCCcCCEecCcCCCCccCCCCCCCCC---CCCCCCCCCCcCCccccceee-eeecceeeeCCHHHHHHHHHHHCC
Confidence 99999999999999965421 111 1121 122333445433211 11122 3344443 5567899999999999
Q ss_pred CEEEEEEcccccccCCCceeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecCCcccccccee
Q 018877 246 PVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 325 (349)
Q Consensus 246 PV~v~i~v~~~f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~~~~ 325 (349)
||+++|.++++|+.|++|||..+++...++|||+||||| ++++++|||||||||++|||+|||||+||.|.|||+++++
T Consensus 156 Pv~v~i~~~~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg-~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~ 234 (236)
T cd02620 156 PVQAAFTVYEDFLYYKSGVYQHTSGKQLGGHAVKIIGWG-VENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVV 234 (236)
T ss_pred CeEEEEEechhhhhcCCcEEeecCCCCcCCeEEEEEEEe-ccCCeeEEEEEeCCCCCCCCCcEEEEEccCccccccccee
Confidence 999999998899999999998766666679999999999 6688999999999999999999999999999999999987
Q ss_pred Ee
Q 018877 326 AG 327 (349)
Q Consensus 326 ~~ 327 (349)
.+
T Consensus 235 ~~ 236 (236)
T cd02620 235 AG 236 (236)
T ss_pred cC
Confidence 53
No 7
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.9e-60 Score=433.88 Aligned_cols=223 Identities=40% Similarity=0.793 Sum_probs=181.5
Q ss_pred CCCceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcCC------CccCCHHHHHHhcCCCCCCCCCCCch
Q 018877 93 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM------NLSLSVNDLLACCGFLCGDGCDGGYP 166 (349)
Q Consensus 93 lP~s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~~------~~~lS~q~l~dc~~~~~~~gC~GG~~ 166 (349)
||++||||+.|+++++++||+|||.||||||||++++||++++|+++. .+.||+|+|++|.. .+.||+||++
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~--~~~GC~GG~~ 78 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ--YSQGCDGGFP 78 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC--CCCCCCCCCH
Confidence 799999999977777899999999999999999999999999998775 78999999999985 3589999999
Q ss_pred HHHHHHHHHcCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeEeCCCHHHHHHHHHhCCC
Q 018877 167 ISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGP 246 (349)
Q Consensus 167 ~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~~gP 246 (349)
..|++|+.++|+++|++|||... ....|.... ..|.. +.......+.++....++++||++|+++||
T Consensus 79 ~~a~~~~~~~Gi~~e~~yPY~~~---~~~~C~~~~------~~~~~----~~~~~~~~i~~~~~~~~~~~ik~~i~~~GP 145 (243)
T cd02621 79 FLVGKFAEDFGIVTEDYFPYTAD---DDRPCKASP------SECRR----YYFSDYNYVGGCYGCTNEDEMKWEIYRNGP 145 (243)
T ss_pred HHHHHHHHhcCcCCCceeCCCCC---CCCCCCCCc------ccccc----ccccceeEcccccccCCHHHHHHHHHHcCC
Confidence 99999999999999999999651 011221100 01110 111112223333333578899999999999
Q ss_pred EEEEEEcccccccCCCceeecCC----C-C--------ccCCcEEEEEEeCCCC-CCccEEEEEccCCCCCCCCceEEEE
Q 018877 247 VEVSFTVYEDFAHYKSGVYKHIT----G-D--------VMGGHAVKLIGWGTSD-DGEDYWILANQWNRSWGADGYFKIK 312 (349)
Q Consensus 247 V~v~i~v~~~f~~y~~Giy~~~~----~-~--------~~~~Hav~IVGyg~~~-~g~~ywivkNSWG~~WG~~Gy~~i~ 312 (349)
|+++|++.++|.+|++|||..+. | . ..++|||+|||||++. ++.+|||||||||++||++|||||+
T Consensus 146 v~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~ 225 (243)
T cd02621 146 IVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIR 225 (243)
T ss_pred EEEEEEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEe
Confidence 99999998899999999998752 2 1 2479999999999433 3899999999999999999999999
Q ss_pred ecCCccccccceeEeecC
Q 018877 313 RGSNECGIEEDVVAGLPS 330 (349)
Q Consensus 313 ~g~n~cgI~~~~~~~~p~ 330 (349)
||.|.|||++.+++++|.
T Consensus 226 ~~~~~cgi~~~~~~~~~~ 243 (243)
T cd02621 226 RGTNECGIESQAVFAYPI 243 (243)
T ss_pred cCCcccCcccceEeeccC
Confidence 999999999999999883
No 8
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=8.3e-60 Score=428.23 Aligned_cols=224 Identities=36% Similarity=0.740 Sum_probs=185.6
Q ss_pred CCCceecCcCCCCCCCCCcCCCCC---CCCcHHHHHHHHHHHHHHHHHcC---CCccCCHHHHHHhcCCCCCCCCCCCch
Q 018877 93 LPKSFDARSAWPQCSTISRILDQG---HCGSCWAFGAVEALSDRFCIHFG---MNLSLSVNDLLACCGFLCGDGCDGGYP 166 (349)
Q Consensus 93 lP~s~D~R~~w~~~~~v~pv~dQg---~cGsCwAfA~~~~lE~~~~i~~~---~~~~lS~q~l~dc~~~~~~~gC~GG~~ 166 (349)
||++||||+.+ +.++++|||||| .||||||||++++||++++|+++ ..+.||+|+|+||+. +.||+||++
T Consensus 1 lP~~~Dwr~~~-~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~ 76 (239)
T cd02698 1 LPKSWDWRNVN-GVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDP 76 (239)
T ss_pred CCCCcccccCC-CCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCH
Confidence 79999999873 223799999998 89999999999999999999875 367999999999986 579999999
Q ss_pred HHHHHHHHHcCcCCCCcccCCCCC-CCCC-CCCCCCCCCcccc--ccccccccccccceeeeeeeeEeCCCHHHHHHHHH
Q 018877 167 ISAWRYFVHHGVVTEECDPYFDST-GCSH-PGCEPAYPTPKCV--RKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIY 242 (349)
Q Consensus 167 ~~a~~~~~~~Gi~~e~~yPY~~~~-~~~~-~~c~~~~~~~~~~--~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~ 242 (349)
..|++|+.++|+++|++|||.... .|.. ..| ..|. ..|.... ....+.+..|....++++||++|+
T Consensus 77 ~~a~~~~~~~Gl~~e~~yPY~~~~~~C~~~~~~------~~c~~~~~c~~~~----~~~~~~i~~~~~~~~~~~i~~~l~ 146 (239)
T cd02698 77 GGVYEYAHKHGIPDETCNPYQAKDGECNPFNRC------GTCNPFGECFAIK----NYTLYFVSDYGSVSGRDKMMAEIY 146 (239)
T ss_pred HHHHHHHHHcCcCCCCeeCCcCCCCCCcCCCCC------CCcccCccccccc----ccceEEeeeceecCCHHHHHHHHH
Confidence 999999999999999999996542 2432 111 1222 1333211 133456777762245788999999
Q ss_pred hCCCEEEEEEcccccccCCCceeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecC-----Cc
Q 018877 243 KNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGS-----NE 317 (349)
Q Consensus 243 ~~gPV~v~i~v~~~f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~-----n~ 317 (349)
++|||+|+|.++++|+.|++|||+..++...++|||+|||||++.++++|||||||||++||++|||||+||. |+
T Consensus 147 ~~GPV~v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~ 226 (239)
T cd02698 147 ARGPISCGIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYN 226 (239)
T ss_pred HcCCEEEEEEecccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccc
Confidence 9999999999988999999999998776667899999999994434899999999999999999999999999 99
Q ss_pred cccccceeEeecC
Q 018877 318 CGIEEDVVAGLPS 330 (349)
Q Consensus 318 cgI~~~~~~~~p~ 330 (349)
||||+.+++++|.
T Consensus 227 ~~i~~~~~~~~~~ 239 (239)
T cd02698 227 LAIEEDCAWADPI 239 (239)
T ss_pred cccccceEEEeeC
Confidence 9999999999883
No 9
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=3e-57 Score=449.70 Aligned_cols=241 Identities=29% Similarity=0.541 Sum_probs=186.2
Q ss_pred CCCCCCceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcCC----------CccCCHHHHHHhcCCCCCC
Q 018877 90 SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGM----------NLSLSVNDLLACCGFLCGD 159 (349)
Q Consensus 90 ~~~lP~s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~~----------~~~lS~q~l~dc~~~~~~~ 159 (349)
..+||++||||+.|..+++++||+|||.||||||||++++||++++|+++. ...||+|+|+||+. .+.
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~--~nq 455 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF--YDQ 455 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC--CCC
Confidence 357999999999998888899999999999999999999999999998642 12799999999986 468
Q ss_pred CCCCCchHHHHHHHHHcCcCCCCcccCCCC-CCCCCCCCCCCCC---------------Ccccccccccccc--ccccce
Q 018877 160 GCDGGYPISAWRYFVHHGVVTEECDPYFDS-TGCSHPGCEPAYP---------------TPKCVRKCVKKNQ--LWRNSK 221 (349)
Q Consensus 160 gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~-~~~~~~~c~~~~~---------------~~~~~~~c~~~~~--~~~~~~ 221 (349)
||+||++..|++|+++.||++|++|||.+. ..|....+..... .+.|...|..... .-....
T Consensus 456 GC~GG~~~~A~kya~~~GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (693)
T PTZ00049 456 GCNGGFPYLVSKMAKLQGIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPA 535 (693)
T ss_pred CcCCCcHHHHHHHHHHCCCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999654 3364322110000 0111111111000 000012
Q ss_pred eeeeeeeE-e--------CCCHHHHHHHHHhCCCEEEEEEcccccccCCCceeecCC------CC---------------
Q 018877 222 HYSISAYR-I--------NSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHIT------GD--------------- 271 (349)
Q Consensus 222 ~~~i~~~~-~--------~~~~~~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~~------~~--------------- 271 (349)
.+.+..|. + ..++++|+++|+.+|||+|+|+++++|++|++|||..+. |.
T Consensus 536 r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~ 615 (693)
T PTZ00049 536 RWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGW 615 (693)
T ss_pred ceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCcccccccccccccc
Confidence 23334443 3 136889999999999999999998899999999998531 21
Q ss_pred ccCCcEEEEEEeCCCC-CCc--cEEEEEccCCCCCCCCceEEEEecCCccccccceeEeecCCC
Q 018877 272 VMGGHAVKLIGWGTSD-DGE--DYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 332 (349)
Q Consensus 272 ~~~~Hav~IVGyg~~~-~g~--~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~~~~~~~p~~~ 332 (349)
...+|||+|||||.++ +|. +|||||||||+.||++|||||+||.|.|||++++++..|++.
T Consensus 616 e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~pd~~ 679 (693)
T PTZ00049 616 EKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEPDFS 679 (693)
T ss_pred ccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEeeecc
Confidence 1369999999999432 453 799999999999999999999999999999999999999875
No 10
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=5.5e-57 Score=402.21 Aligned_cols=205 Identities=37% Similarity=0.740 Sum_probs=178.8
Q ss_pred CCceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccCCHHHHHHhcCCCCCCCCCCCchHHHHHHH
Q 018877 94 PKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYF 173 (349)
Q Consensus 94 P~s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~ 173 (349)
|++||||+. +.++||+|||.||+|||||++++||++++++++....||+|+|++|... .+.+|.||.+..|++++
T Consensus 1 P~~~d~r~~----~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~-~~~gC~GG~~~~a~~~~ 75 (210)
T cd02248 1 PESVDWREK----GAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYV 75 (210)
T ss_pred CCcccCCcC----CCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC-CCCCCCCCCHHHhHHHH
Confidence 889999987 5699999999999999999999999999999998999999999999862 36899999999999999
Q ss_pred HHcCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeE-eCC-CHHHHHHHHHhCCCEEEEE
Q 018877 174 VHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INS-DPEDIMAEIYKNGPVEVSF 251 (349)
Q Consensus 174 ~~~Gi~~e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~-~~~~ik~~l~~~gPV~v~i 251 (349)
.+.|+++|++|||... ...|..... ...+++..|. +.. ++++||++|+++|||+++|
T Consensus 76 ~~~Gi~~e~~yPY~~~-----------------~~~C~~~~~----~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~ 134 (210)
T cd02248 76 KNGGLASESDYPYTGK-----------------DGTCKYNSS----KVGAKITGYSNVPPGDEEALKAALANYGPVSVAI 134 (210)
T ss_pred HHCCcCccccCCccCC-----------------CCCccCCCC----cccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEE
Confidence 9999999999999653 112332211 3456777777 543 5789999999999999999
Q ss_pred EcccccccCCCceeecCCC-CccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecCCcccccccee
Q 018877 252 TVYEDFAHYKSGVYKHITG-DVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 325 (349)
Q Consensus 252 ~v~~~f~~y~~Giy~~~~~-~~~~~Hav~IVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~~~~ 325 (349)
.+.++|..|++|||..+.+ ...++|||+||||| ++.+.+|||||||||++||++|||||+|+.|.|||++++.
T Consensus 135 ~~~~~f~~y~~Giy~~~~~~~~~~~Hav~iVGy~-~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~ 208 (210)
T cd02248 135 DASSSFQFYKGGIYSGPCCSNTNLNHAVLLVGYG-TENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYAS 208 (210)
T ss_pred ecCcccccCCCCceeCCCCCCCcCCEEEEEEEEe-ecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeee
Confidence 9999999999999998766 56689999999999 6668999999999999999999999999999999997654
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=4.2e-56 Score=437.47 Aligned_cols=223 Identities=27% Similarity=0.516 Sum_probs=181.7
Q ss_pred CCCCCCceecCcCCCCCCCCCcCCCCCC---CCcHHHHHHHHHHHHHHHHHcC------CCccCCHHHHHHhcCCCCCCC
Q 018877 90 SLKLPKSFDARSAWPQCSTISRILDQGH---CGSCWAFGAVEALSDRFCIHFG------MNLSLSVNDLLACCGFLCGDG 160 (349)
Q Consensus 90 ~~~lP~s~D~R~~w~~~~~v~pv~dQg~---cGsCwAfA~~~~lE~~~~i~~~------~~~~lS~q~l~dc~~~~~~~g 160 (349)
..+||++||||+.+ +.++++||||||. ||||||||++++||++++|+++ ..+.||+|+|+||+. .+.|
T Consensus 202 ~~~LP~sfDWR~~g-g~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~--~n~G 278 (548)
T PTZ00364 202 GDPPPAAWSWGDVG-GASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ--YGQG 278 (548)
T ss_pred ccCCCCccccCcCC-CCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC--CCCC
Confidence 46799999999973 3347999999999 9999999999999999999884 468999999999985 3689
Q ss_pred CCCCchHHHHHHHHHcCcCCCCcc--cCCCCCCCCCCCCCCCCCCccccccccccc--cccccceeeeeeeeE-eCCCHH
Q 018877 161 CDGGYPISAWRYFVHHGVVTEECD--PYFDSTGCSHPGCEPAYPTPKCVRKCVKKN--QLWRNSKHYSISAYR-INSDPE 235 (349)
Q Consensus 161 C~GG~~~~a~~~~~~~Gi~~e~~y--PY~~~~~~~~~~c~~~~~~~~~~~~c~~~~--~~~~~~~~~~i~~~~-~~~~~~ 235 (349)
|+||++..|++|++++|+++|++| ||.+..+ ... .|+... ..+.......+.+|. +..+++
T Consensus 279 CdGG~p~~A~~yi~~~GI~tE~dY~~PY~~~dg-~~~-------------~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~ 344 (548)
T PTZ00364 279 CAGGFPEEVGKFAETFGILTTDSYYIPYDSGDG-VER-------------ACKTRRPSRRYYFTNYGPLGGYYGAVTDPD 344 (548)
T ss_pred CCCCcHHHHHHHHHhCCcccccccCCCCCCCCC-CCC-------------CCCCCcccceeeeeeeEEecceeecCCcHH
Confidence 999999999999999999999999 9965421 111 122111 011111223445554 445778
Q ss_pred HHHHHHHhCCCEEEEEEcccccccCCCceeecC---------CC----------CccCCcEEEEEEeCCCCCCccEEEEE
Q 018877 236 DIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHI---------TG----------DVMGGHAVKLIGWGTSDDGEDYWILA 296 (349)
Q Consensus 236 ~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~---------~~----------~~~~~Hav~IVGyg~~~~g~~ywivk 296 (349)
+|+++|+++|||+|+|+++.+|+.|++|||.+. ++ ...++|||+|||||.+++|.+|||||
T Consensus 345 ~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVK 424 (548)
T PTZ00364 345 EIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVL 424 (548)
T ss_pred HHHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEE
Confidence 999999999999999999989999999998631 11 13469999999999656789999999
Q ss_pred ccCCC--CCCCCceEEEEecCCccccccceeEeec
Q 018877 297 NQWNR--SWGADGYFKIKRGSNECGIEEDVVAGLP 329 (349)
Q Consensus 297 NSWG~--~WG~~Gy~~i~~g~n~cgI~~~~~~~~p 329 (349)
||||+ +|||+|||||+||.|+||||++++++.|
T Consensus 425 NSWGt~~~WGE~GYfRI~RG~N~CGIes~~v~~~~ 459 (548)
T PTZ00364 425 DPWGSRRSWCDGGTRKIARGVNAYNIESEVVVMYW 459 (548)
T ss_pred CCCCCCCCcccCCeEEEEcCCCcccccceeeeeee
Confidence 99999 9999999999999999999999998887
No 12
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=8.5e-55 Score=389.66 Aligned_cols=212 Identities=43% Similarity=0.816 Sum_probs=175.9
Q ss_pred CCCceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHc-CCCccCCHHHHHHhcCCCCCCCCCCCchHHHHH
Q 018877 93 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHF-GMNLSLSVNDLLACCGFLCGDGCDGGYPISAWR 171 (349)
Q Consensus 93 lP~s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~-~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~ 171 (349)
||++||||+.+ +.++||+|||.||+|||||++++||++++++. ...+.||+|+|++|.. ..+.+|+||++..|++
T Consensus 1 lP~~~D~r~~~---~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~ 76 (219)
T PF00112_consen 1 LPKSFDWRDKG---GRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALK 76 (219)
T ss_dssp STSSEEGGGTT---TCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHH
T ss_pred CCCCEecccCC---CCcCccccCCcccccccchhccceecccccccccccccccccccccccc-ccccccccCcccccce
Confidence 79999999962 35999999999999999999999999999999 7999999999999996 3467999999999999
Q ss_pred HHHH-cCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeE-eCC-CHHHHHHHHHhCCCEE
Q 018877 172 YFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INS-DPEDIMAEIYKNGPVE 248 (349)
Q Consensus 172 ~~~~-~Gi~~e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~~-~~~~ik~~l~~~gPV~ 248 (349)
++++ +|+++|++|||.... . ..|...... ...+++..|. +.. ++++||++|+++|||+
T Consensus 77 ~~~~~~Gi~~e~~~pY~~~~------------~----~~c~~~~~~---~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~ 137 (219)
T PF00112_consen 77 YIKNNNGIVTEEDYPYNGNE------------N----PTCKSKKSN---SYYVKIKGYGKVKDNDIEDIKKALMKYGPVV 137 (219)
T ss_dssp HHHHHTSBEBTTTS--SSSS------------S----CSSCHSGGG---EEEBEESEEEEEESTCHHHHHHHHHHHSSEE
T ss_pred eecccCcccccccccccccc------------c----ccccccccc---cccccccccccccccchhHHHHHHhhCceee
Confidence 9999 999999999996541 0 234432211 1145677776 443 6899999999999999
Q ss_pred EEEEccc-ccccCCCceeecCCC-CccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecCC-cccccccee
Q 018877 249 VSFTVYE-DFAHYKSGVYKHITG-DVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSN-ECGIEEDVV 325 (349)
Q Consensus 249 v~i~v~~-~f~~y~~Giy~~~~~-~~~~~Hav~IVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~n-~cgI~~~~~ 325 (349)
+++.+.+ +|..|++|||..+.+ ...++|||+||||| ++.+++|||||||||++||++|||||+|+.+ +|||+++++
T Consensus 138 ~~~~~~~~~f~~~~~gi~~~~~~~~~~~~Hav~iVGy~-~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~ 216 (219)
T PF00112_consen 138 ASIDVSSEDFQNYKSGIYDPPDCSNESGGHAVLIVGYD-DENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAV 216 (219)
T ss_dssp EEEEEESHHHHTEESSEECSTSSSSSSEEEEEEEEEEE-EETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEE
T ss_pred eeeeccccccccccceeeeccccccccccccccccccc-cccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceee
Confidence 9999988 699999999998754 45789999999999 6679999999999999999999999999997 999999999
Q ss_pred Eee
Q 018877 326 AGL 328 (349)
Q Consensus 326 ~~~ 328 (349)
+++
T Consensus 217 ~~~ 219 (219)
T PF00112_consen 217 YPI 219 (219)
T ss_dssp EEE
T ss_pred ecC
Confidence 875
No 13
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=5.8e-53 Score=377.58 Aligned_cols=297 Identities=33% Similarity=0.646 Sum_probs=235.1
Q ss_pred cccccccHHHHHHHHHhCCCCCeEEecCCCCCCCCHHHH-HHhhCCCCCCCCCcCCCCc-cccCCCCCCCCceecCcCCC
Q 018877 27 KLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQF-KHLLGVKPTPKGLLLGVPV-KTHDKSLKLPKSFDARSAWP 104 (349)
Q Consensus 27 ~~r~~~~~~~~i~~~n~~~~~~~~~~~n~~fsd~t~eE~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~lP~s~D~R~~w~ 104 (349)
.+...+++.++|++||. .+.+|+++..++|..||.++= +-.||..+++......... ...+...+||+.||.|++|+
T Consensus 142 dq~~CLv~Pd~iE~in~-G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNEi~~~l~p~~~LPE~F~As~KWp 220 (470)
T KOG1544|consen 142 DQEPCLVDPDMIEAINQ-GNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNEIYTVLNPGEVLPEAFEASEKWP 220 (470)
T ss_pred CCceeecCHHHHHHHhc-CCccccccchhhhhcccccccceeeecccCchhhhhhHHhHhhccCcccccchhhhhhhcCC
Confidence 35667899999999999 789999998899999998884 4478877665443321111 12233468999999999998
Q ss_pred CCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCccCCHHHHHHhcCCCCCCCCCCCchHHHHHHHHHcCcCCCC
Q 018877 105 QCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEE 182 (349)
Q Consensus 105 ~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~--~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~ 182 (349)
+. +.||.|||+|++.|||+++++..++++|+.. ....||+|+|++|.. ....||+||.+..|+=|+.+.|+|...
T Consensus 221 ~l--iH~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~-h~q~GC~gG~lDRAWWYlRKrGvVsdh 297 (470)
T KOG1544|consen 221 NL--IHEPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDT-HQQQGCRGGRLDRAWWYLRKRGVVSDH 297 (470)
T ss_pred cc--ccCccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhh-hhhccCccCcccchheeeecccccccc
Confidence 55 9999999999999999999999999998765 668899999999987 456899999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCC-----Cccccccccccccccccceeee-eeeeEeCCCHHHHHHHHHhCCCEEEEEEcccc
Q 018877 183 CDPYFDSTGCSHPGCEPAYP-----TPKCVRKCVKKNQLWRNSKHYS-ISAYRINSDPEDIMAEIYKNGPVEVSFTVYED 256 (349)
Q Consensus 183 ~yPY~~~~~~~~~~c~~~~~-----~~~~~~~c~~~~~~~~~~~~~~-i~~~~~~~~~~~ik~~l~~~gPV~v~i~v~~~ 256 (349)
||||.....-..+.|..... ...-...|..... .....|. ...|.|.+++++|+++|+++|||.+.|.|.+|
T Consensus 298 CYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~--~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHED 375 (470)
T KOG1544|consen 298 CYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYV--NSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHED 375 (470)
T ss_pred cccccCCCCCCCCCceeeccccCcccccccCcCCCccc--ccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhh
Confidence 99997654444444533222 1111112332221 1112333 34666889999999999999999999999999
Q ss_pred cccCCCceeecCCC--------CccCCcEEEEEEeCCCC--C--CccEEEEEccCCCCCCCCceEEEEecCCccccccce
Q 018877 257 FAHYKSGVYKHITG--------DVMGGHAVKLIGWGTSD--D--GEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDV 324 (349)
Q Consensus 257 f~~y~~Giy~~~~~--------~~~~~Hav~IVGyg~~~--~--g~~ywivkNSWG~~WG~~Gy~~i~~g~n~cgI~~~~ 324 (349)
|+.|++|||.+... ...+.|+|.|.|||++. + ..+|||..||||+.|||+|||||-||.|+|.||+.+
T Consensus 376 FF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfv 455 (470)
T KOG1544|consen 376 FFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFV 455 (470)
T ss_pred hhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhh
Confidence 99999999987542 13578999999999432 2 358999999999999999999999999999999999
Q ss_pred eEeec
Q 018877 325 VAGLP 329 (349)
Q Consensus 325 ~~~~p 329 (349)
++++-
T Consensus 456 IgAWG 460 (470)
T KOG1544|consen 456 IGAWG 460 (470)
T ss_pred hhhhh
Confidence 99886
No 14
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=7.4e-50 Score=345.83 Aligned_cols=168 Identities=47% Similarity=0.982 Sum_probs=147.7
Q ss_pred CCCceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccCCHHHHHHhcCCCCCCCCCCCchHHHHHH
Q 018877 93 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRY 172 (349)
Q Consensus 93 lP~s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~ 172 (349)
||++||||+. +.++||+|||.||+|||||++++||++++++++..++||+|+|++|... .+.||+||++..|++|
T Consensus 1 lP~~~D~R~~----~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~ 75 (174)
T smart00645 1 LPESFDWRKK----GAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEY 75 (174)
T ss_pred CCCcCccccc----CCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHH
Confidence 7999999997 4599999999999999999999999999999998999999999999873 3569999999999999
Q ss_pred HHHc-CcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeEeCCCHHHHHHHHHhCCCEEEEE
Q 018877 173 FVHH-GVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSF 251 (349)
Q Consensus 173 ~~~~-Gi~~e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~~gPV~v~i 251 (349)
+.++ |+++|++|||. . ++.+
T Consensus 76 ~~~~~Gi~~e~~~PY~--------------------------------~---------------------------~~~~ 96 (174)
T smart00645 76 IKKNGGLETESCYPYT--------------------------------G---------------------------SVAI 96 (174)
T ss_pred HHHcCCcccccccCcc--------------------------------c---------------------------EEEE
Confidence 9998 99999999991 0 4555
Q ss_pred EcccccccCCCceeecC-CCCccCCcEEEEEEeCCCCCCccEEEEEccCCCCCCCCceEEEEecC-Ccccccccee
Q 018877 252 TVYEDFAHYKSGVYKHI-TGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGS-NECGIEEDVV 325 (349)
Q Consensus 252 ~v~~~f~~y~~Giy~~~-~~~~~~~Hav~IVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~g~-n~cgI~~~~~ 325 (349)
.+. +|++|++|||+.+ ++...++|+|+|||||.+.++++|||||||||+.||++|||||.|+. |.|||+....
T Consensus 97 ~~~-~f~~Y~~Gi~~~~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~~ 171 (174)
T smart00645 97 DAS-DFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVA 171 (174)
T ss_pred Ecc-cccCCcCeEECCCCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeeee
Confidence 554 6999999999875 33344799999999994338899999999999999999999999998 9999977553
No 15
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=6.8e-47 Score=339.22 Aligned_cols=197 Identities=32% Similarity=0.582 Sum_probs=161.5
Q ss_pred ceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCccCCHHHHHHhcCCCC---CCCCCCCchHHHH
Q 018877 96 SFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNDLLACCGFLC---GDGCDGGYPISAW 170 (349)
Q Consensus 96 s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~--~~~~lS~q~l~dc~~~~~---~~gC~GG~~~~a~ 170 (349)
++|||+. + ++||+|||.||+|||||+++++|++++++++ ..+.||+|+|++|..... ..+|.||.+..++
T Consensus 1 ~~d~r~~----~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~ 75 (223)
T cd02619 1 SVDLRPL----R-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSAL 75 (223)
T ss_pred CCcchhc----C-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHH
Confidence 4798886 5 8999999999999999999999999999987 889999999999987332 2699999999999
Q ss_pred H-HHHHcCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeE-eC-CCHHHHHHHHHhCCCE
Q 018877 171 R-YFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-IN-SDPEDIMAEIYKNGPV 247 (349)
Q Consensus 171 ~-~~~~~Gi~~e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~-~~-~~~~~ik~~l~~~gPV 247 (349)
. +++++|+++|++|||..... .|...|.. ......+++..|. +. .++++||++|+++|||
T Consensus 76 ~~~~~~~Gi~~e~~~Py~~~~~-------------~~~~~~~~----~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv 138 (223)
T cd02619 76 LKLVALKGIPPEEDYPYGAESD-------------GEEPKSEA----ALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPV 138 (223)
T ss_pred HHHHHHcCCCccccCCCCCCCC-------------CCCCCCcc----chhhcceeecceeEeCchhHHHHHHHHHHCCCE
Confidence 8 88899999999999965421 11111100 0113346677777 43 3578999999999999
Q ss_pred EEEEEcccccccCCCceee------cCCCCccCCcEEEEEEeCCCCC--CccEEEEEccCCCCCCCCceEEEEecC
Q 018877 248 EVSFTVYEDFAHYKSGVYK------HITGDVMGGHAVKLIGWGTSDD--GEDYWILANQWNRSWGADGYFKIKRGS 315 (349)
Q Consensus 248 ~v~i~v~~~f~~y~~Giy~------~~~~~~~~~Hav~IVGyg~~~~--g~~ywivkNSWG~~WG~~Gy~~i~~g~ 315 (349)
+++|.+..+|..|++|+|. ..++...++|||+||||| ++. +++|||||||||++||++||+||+++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~-~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 139 VAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYD-DNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred EEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeec-CCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 9999999999999999863 223455689999999999 555 899999999999999999999999984
No 16
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=5e-46 Score=379.21 Aligned_cols=227 Identities=23% Similarity=0.398 Sum_probs=164.1
Q ss_pred CCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccCCHHHHHHhcCCCCCCCCCCCc-hHHHHHHHHHcC-cCC
Q 018877 103 WPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGCDGGY-PISAWRYFVHHG-VVT 180 (349)
Q Consensus 103 w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~GG~-~~~a~~~~~~~G-i~~ 180 (349)
++.|....||+|||.||+|||||++++||++++++++..+.||+|+|+||+....+.||.||+ +..++.|+.++| +++
T Consensus 538 ~~sC~s~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLpt 617 (1004)
T PTZ00462 538 ENNCISKIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPA 617 (1004)
T ss_pred CCCCCCCCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcc
Confidence 467766789999999999999999999999999999999999999999998644467999997 555669998875 788
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCccccccccccccc--c--ccceeeeeeeeE-eCC-----C----HHHHHHHHHhCCC
Q 018877 181 EECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQL--W--RNSKHYSISAYR-INS-----D----PEDIMAEIYKNGP 246 (349)
Q Consensus 181 e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~--~--~~~~~~~i~~~~-~~~-----~----~~~ik~~l~~~gP 246 (349)
|++|||.... ....|......- ..|...... + .......+.+|. +.. + +++|+++|++.||
T Consensus 618 ESdYPYt~k~--~~g~Cp~~~~~w---~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGP 692 (1004)
T PTZ00462 618 DSNYLYNYTK--VGEDCPDEEDHW---MNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGS 692 (1004)
T ss_pred cccCCCccCC--CCCCCCCCcccc---cccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCC
Confidence 9999996420 001121100000 000000000 0 001122334444 221 1 4689999999999
Q ss_pred EEEEEEcccccccCC-CceeecC-CCCccCCcEEEEEEeCCC----CCCccEEEEEccCCCCCCCCceEEEEe-cCCccc
Q 018877 247 VEVSFTVYEDFAHYK-SGVYKHI-TGDVMGGHAVKLIGWGTS----DDGEDYWILANQWNRSWGADGYFKIKR-GSNECG 319 (349)
Q Consensus 247 V~v~i~v~~~f~~y~-~Giy~~~-~~~~~~~Hav~IVGyg~~----~~g~~ywivkNSWG~~WG~~Gy~~i~~-g~n~cg 319 (349)
|+|+|++. +|+.|. +|||... |+...++|||+|||||.+ .++++|||||||||+.||++|||||.| |.|.||
T Consensus 693 VaV~IdAs-df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CG 771 (1004)
T PTZ00462 693 VIAYIKAE-NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCE 771 (1004)
T ss_pred EEEEEEee-hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCc
Confidence 99999985 788884 8987654 444457999999999943 125799999999999999999999998 789999
Q ss_pred cccceeEeecCCCCcc
Q 018877 320 IEEDVVAGLPSSKNLV 335 (349)
Q Consensus 320 I~~~~~~~~p~~~~~~ 335 (349)
|.....+++..++-..
T Consensus 772 in~i~t~~~fn~d~~~ 787 (1004)
T PTZ00462 772 DNFIHSVVIFNIDLPK 787 (1004)
T ss_pred cchheeeeeEeecccc
Confidence 9887777776554433
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.8e-30 Score=233.86 Aligned_cols=207 Identities=28% Similarity=0.401 Sum_probs=131.9
Q ss_pred CCCCCCceecCcCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCccCCHHHHHHhcCCCCCCCC-----CCC
Q 018877 90 SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNDLLACCGFLCGDGC-----DGG 164 (349)
Q Consensus 90 ~~~lP~s~D~R~~w~~~~~v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC-----~GG 164 (349)
...+|+.||||.. +.|+||||||.||+||||++++++|+.+.-.. ...+|+-.+..........+| +||
T Consensus 96 ~~s~~~~fd~r~~----g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g 169 (372)
T COG4870 96 SASLPSYFDRRDE----GKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGG 169 (372)
T ss_pred cccchhheeeecc----CCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCC
Confidence 3468999999998 77999999999999999999999998874332 566777666554432223333 266
Q ss_pred chHHHHHHHHH-cCcCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeEeCCCHHHHHHHHHh
Q 018877 165 YPISAWRYFVH-HGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYK 243 (349)
Q Consensus 165 ~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~ 243 (349)
....+..|+.+ .|.+.+.+-||.....- .+ +|.+..+.. .....+..-.-..+...|++++..
T Consensus 170 ~~~m~~a~l~e~sgpv~et~d~y~~~s~~----------~~----~~~p~~k~~--~~~~~i~~~~~~LdnG~i~~~~~~ 233 (372)
T COG4870 170 NADMSAAYLTEWSGPVYETDDPYSENSYF----------SP----TNLPVTKHV--QEAQIIPSRKKYLDNGNIKAMFGF 233 (372)
T ss_pred ccccccccccccCCcchhhcCcccccccc----------CC----cCCchhhcc--ccceecccchhhhcccchHHHHhh
Confidence 66655556654 58888888999544110 00 111111000 000011111111233458888888
Q ss_pred CCCEEEEEEccc-ccccCCCceeecCCCCccCCcEEEEEEeCCC---------CCCccEEEEEccCCCCCCCCceEEEEe
Q 018877 244 NGPVEVSFTVYE-DFAHYKSGVYKHITGDVMGGHAVKLIGWGTS---------DDGEDYWILANQWNRSWGADGYFKIKR 313 (349)
Q Consensus 244 ~gPV~v~i~v~~-~f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~---------~~g~~ywivkNSWG~~WG~~Gy~~i~~ 313 (349)
+|-+...|.+.. .+.....+.|..... ...+|||+||||+|. ..|.++||||||||++||++|||||+|
T Consensus 234 yg~~s~~~~id~~~~~~~~~~~~~~~s~-~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY 312 (372)
T COG4870 234 YGAVSSSMYIDATNSLGICIPYPYVDSG-ENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISY 312 (372)
T ss_pred hccccceeEEecccccccccCCCCCCcc-ccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEe
Confidence 888876655421 122222233333333 557999999999952 236789999999999999999999999
Q ss_pred cCCccc
Q 018877 314 GSNECG 319 (349)
Q Consensus 314 g~n~cg 319 (349)
..-.-|
T Consensus 313 ~ya~~g 318 (372)
T COG4870 313 YYALNG 318 (372)
T ss_pred eecccc
Confidence 764444
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.91 E-value=2.9e-24 Score=207.88 Aligned_cols=203 Identities=24% Similarity=0.344 Sum_probs=134.8
Q ss_pred CCcCCCCCCCCcHHHHHHHHHHHHHHHHH-cCCCccCCHHHHHH----------------hcCCC----------CCCCC
Q 018877 109 ISRILDQGHCGSCWAFGAVEALSDRFCIH-FGMNLSLSVNDLLA----------------CCGFL----------CGDGC 161 (349)
Q Consensus 109 v~pv~dQg~cGsCwAfA~~~~lE~~~~i~-~~~~~~lS~q~l~d----------------c~~~~----------~~~gC 161 (349)
..||+||++.|.||.||+...|+..+..+ +...+.||+.++.. +.... .....
T Consensus 54 ~~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~ 133 (437)
T cd00585 54 TEPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQN 133 (437)
T ss_pred CCCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcC
Confidence 35899999999999999999999988774 44789999987765 21100 13456
Q ss_pred CCCchHHHHHHHHHcCcCCCCcccCCCCCCCCC-----------------------------------------------
Q 018877 162 DGGYPISAWRYFVHHGVVTEECDPYFDSTGCSH----------------------------------------------- 194 (349)
Q Consensus 162 ~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~----------------------------------------------- 194 (349)
+||.-..+...+.++|+++.+.||-+..+.-+.
T Consensus 134 DGGqw~m~~~li~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 134 DGGQWDMLVNLIEKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCCchHHHHHHHHHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999632211000
Q ss_pred ----CCC---------------CCCCCCccc--cc--cccccccc-ccc--------ceeeeee-----------eeEeC
Q 018877 195 ----PGC---------------EPAYPTPKC--VR--KCVKKNQL-WRN--------SKHYSIS-----------AYRIN 231 (349)
Q Consensus 195 ----~~c---------------~~~~~~~~~--~~--~c~~~~~~-~~~--------~~~~~i~-----------~~~~~ 231 (349)
++- ...+ +|.. .. .|...... ..+ .+.|.+. .| +.
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~-TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y-~N 291 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKEL-TPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILY-LN 291 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCc-CHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceE-Ee
Confidence 000 0000 0000 00 00000000 000 0111110 11 11
Q ss_pred CCHHHHH----HHHHhCCCEEEEEEcccccccCCCceeecC---------------------CCCccCCcEEEEEEeCCC
Q 018877 232 SDPEDIM----AEIYKNGPVEVSFTVYEDFAHYKSGVYKHI---------------------TGDVMGGHAVKLIGWGTS 286 (349)
Q Consensus 232 ~~~~~ik----~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~---------------------~~~~~~~Hav~IVGyg~~ 286 (349)
...+.++ ++|.+++||.++++|. .|..|++||+... ++....+|||+|||||.+
T Consensus 292 vp~d~l~~~~~~~L~~g~pV~~g~Dv~-~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D 370 (437)
T cd00585 292 VPMDVLKKAAIAQLKDGEPVWFGCDVG-KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLD 370 (437)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEEEcC-hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEec
Confidence 2345555 6777899999999996 5779999999543 233446899999999966
Q ss_pred CCCc-cEEEEEccCCCCCCCCceEEEEec
Q 018877 287 DDGE-DYWILANQWNRSWGADGYFKIKRG 314 (349)
Q Consensus 287 ~~g~-~ywivkNSWG~~WG~~Gy~~i~~g 314 (349)
++|+ .||+||||||+.||++||++|+++
T Consensus 371 ~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 371 EDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred CCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 6676 699999999999999999999975
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.67 E-value=5.4e-16 Score=150.51 Aligned_cols=205 Identities=22% Similarity=0.318 Sum_probs=112.4
Q ss_pred CCcCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCccCCHHHHH----------------HhcCCC----------CCCCC
Q 018877 109 ISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLL----------------ACCGFL----------CGDGC 161 (349)
Q Consensus 109 v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~-~~~~lS~q~l~----------------dc~~~~----------~~~gC 161 (349)
..||.||.+.|-||.||+...|+..+..+.+ ....||+.+|. ++.... .....
T Consensus 55 ~~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~ 134 (438)
T PF03051_consen 55 TGPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVS 134 (438)
T ss_dssp S-S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-
T ss_pred cCCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCC
Confidence 3589999999999999999999999988776 88999998875 222100 02346
Q ss_pred CCCchHHHHHHHHHcCcCCCCcccCCCCCCCCC-----------------------------------------------
Q 018877 162 DGGYPISAWRYFVHHGVVTEECDPYFDSTGCSH----------------------------------------------- 194 (349)
Q Consensus 162 ~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~----------------------------------------------- 194 (349)
+||.-..+.+.++++|+|+.+.||-+..+.-+.
T Consensus 135 DGGqw~~~~nli~KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 135 DGGQWDMVVNLIKKYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp S-B-HHHHHHHHHHH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998743211110
Q ss_pred ----CCC--CCCCC------------Cccc--ccccccccccc-----------ccceeeee---------eeeE-eCCC
Q 018877 195 ----PGC--EPAYP------------TPKC--VRKCVKKNQLW-----------RNSKHYSI---------SAYR-INSD 233 (349)
Q Consensus 195 ----~~c--~~~~~------------~~~~--~~~c~~~~~~~-----------~~~~~~~i---------~~~~-~~~~ 233 (349)
|+- +-.+. +|.. ...+......| .-.+.+.+ .... ++..
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 000 00000 0000 00000000000 00011111 0001 1122
Q ss_pred HH----HHHHHHHhCCCEEEEEEcccccccCCCceeecCC---------------------CCccCCcEEEEEEeCCCCC
Q 018877 234 PE----DIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHIT---------------------GDVMGGHAVKLIGWGTSDD 288 (349)
Q Consensus 234 ~~----~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~~---------------------~~~~~~Hav~IVGyg~~~~ 288 (349)
.+ .+.++|.++-||..+-+|.+ +...+.||..... .....+|||+|||.+.|++
T Consensus 295 id~lk~~~i~~Lk~G~~VwfgcDV~k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~ 373 (438)
T PF03051_consen 295 IDELKDAAIKSLKAGYPVWFGCDVGK-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDED 373 (438)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEETTT-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TT
T ss_pred HHHHHHHHHHHHHcCCcEEEeccCCc-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccC
Confidence 33 44556667889999999975 4566788865321 1233589999999997777
Q ss_pred Cc-cEEEEEccCCCCCCCCceEEEEec
Q 018877 289 GE-DYWILANQWNRSWGADGYFKIKRG 314 (349)
Q Consensus 289 g~-~ywivkNSWG~~WG~~Gy~~i~~g 314 (349)
|+ .+|+|+||||++.|.+|||.|+..
T Consensus 374 g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 374 GKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp SSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred CCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 76 599999999999999999999864
No 20
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=98.87 E-value=2.3e-09 Score=75.28 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=47.6
Q ss_pred HHHHHHHhhhh-cccccccccccccHHH--HHHHHHhCCCCCeEEecCCCCCCCCHHHH
Q 018877 10 WMWCCLQTFAE-GVVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQF 65 (349)
Q Consensus 10 ~~~f~~~~~~~-~~~~e~~~r~~~~~~~--~i~~~n~~~~~~~~~~~n~~fsd~t~eE~ 65 (349)
|..|+.+|.|. .+..|...|+.+|..+ .|+++|+.+..+|++++| +|+|||.+||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N-~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLN-QFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SS-TTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCc-cccCcChhhC
Confidence 67899999888 6999999999999985 799999768899999999 9999999997
No 21
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.85 E-value=2.1e-08 Score=92.01 Aligned_cols=80 Identities=25% Similarity=0.427 Sum_probs=56.1
Q ss_pred CHHHHHHH----HHhCCCEEEEEEcccccccCCCceeecC------------C---------CCccCCcEEEEEEeCCCC
Q 018877 233 DPEDIMAE----IYKNGPVEVSFTVYEDFAHYKSGVYKHI------------T---------GDVMGGHAVKLIGWGTSD 287 (349)
Q Consensus 233 ~~~~ik~~----l~~~gPV~v~i~v~~~f~~y~~Giy~~~------------~---------~~~~~~Hav~IVGyg~~~ 287 (349)
+.+.+|++ +.++-||-.+-+|. .+..-+.||.... . +.....|||+|.|.+-++
T Consensus 296 ~me~lkkl~~~q~qagetVwFG~dvg-q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 296 DMERLKKLAIKQMQAGETVWFGCDVG-QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred cHHHHHHHHHHHHhcCCcEEeecCch-hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 44555543 34566898888884 3555556654311 0 122357999999999777
Q ss_pred CCc-cEEEEEccCCCCCCCCceEEEEe
Q 018877 288 DGE-DYWILANQWNRSWGADGYFKIKR 313 (349)
Q Consensus 288 ~g~-~ywivkNSWG~~WG~~Gy~~i~~ 313 (349)
+|. --|.|.||||.+=|.+|||-++-
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaSd 401 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVASD 401 (444)
T ss_pred CCCceeeEeecccccccCCCceEeehH
Confidence 654 47999999999999999998873
No 22
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=98.36 E-value=1.6e-07 Score=65.50 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=45.7
Q ss_pred HHHHHHHhhhh-cccccccccccccHHH--HHHHHHhCCCCCeEEecCCCCCCCCHHH
Q 018877 10 WMWCCLQTFAE-GVVSKLKLDSHILQDS--IIKEVNENPKAGWKAARNPQFSNYTVGQ 64 (349)
Q Consensus 10 ~~~f~~~~~~~-~~~~e~~~r~~~~~~~--~i~~~n~~~~~~~~~~~n~~fsd~t~eE 64 (349)
|..|+..+.+. .+..|...|+.+|..+ .|+.+|+.+..+|++++| +|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N-~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLN-QFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCc-ccccCCCCC
Confidence 56788888887 6777888899999985 689999866689999999 999999876
No 23
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=97.98 E-value=8.2e-06 Score=52.55 Aligned_cols=40 Identities=45% Similarity=0.800 Sum_probs=27.3
Q ss_pred cHHHHHHHHHhCCCCCeEEecCCCCCCCCHHHHHHhhCCCCCC
Q 018877 33 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTP 75 (349)
Q Consensus 33 ~~~~~i~~~n~~~~~~~~~~~n~~fsd~t~eE~~~~~~~~~~~ 75 (349)
+.+++|+.||+. +.+|+||.| |.+.+.+++++++|..+.+
T Consensus 1 Lsde~I~~IN~~-~~tWkAG~N--F~~~~~~~ik~LlGv~~~~ 40 (41)
T PF08127_consen 1 LSDEFIDYINSK-NTTWKAGRN--FENTSIEYIKRLLGVLPDP 40 (41)
T ss_dssp S-HHHHHHHHHC-T-SEEE------SSB-HHHHHHCS-B-TTS
T ss_pred CCHHHHHHHHcC-CCcccCCCC--CCCCCHHHHHHHcCCCCCC
Confidence 357899999996 899999999 7999999999999987643
No 24
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=97.60 E-value=6.9e-05 Score=69.10 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=56.8
Q ss_pred CCcCCCCCCCCcHHHHHHHHHHHHHHHHHcC-CCccCCHHHHHHh--------------------cCC--------CCCC
Q 018877 109 ISRILDQGHCGSCWAFGAVEALSDRFCIHFG-MNLSLSVNDLLAC--------------------CGF--------LCGD 159 (349)
Q Consensus 109 v~pv~dQg~cGsCwAfA~~~~lE~~~~i~~~-~~~~lS~q~l~dc--------------------~~~--------~~~~ 159 (349)
-+||.+|.+.|-||.|+.+..+--.+..+-+ ....||..+|+.- ..- ..+.
T Consensus 62 ~~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP 141 (457)
T KOG4128|consen 62 RQPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNP 141 (457)
T ss_pred CcccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCC
Confidence 3699999999999999999876544444433 5678888777431 110 0123
Q ss_pred CCCCCchHHHHHHHHHcCcCCCCcccCC
Q 018877 160 GCDGGYPISAWRYFVHHGVVTEECDPYF 187 (349)
Q Consensus 160 gC~GG~~~~a~~~~~~~Gi~~e~~yPY~ 187 (349)
.-+||.-..-.+.++++|+.+..|||-.
T Consensus 142 ~~DGGqw~MfvNlVkKYGviPKkcy~~s 169 (457)
T KOG4128|consen 142 VPDGGQWQMFVNLVKKYGVIPKKCYLHS 169 (457)
T ss_pred CCCCchHHHHHHHHHHhCCCcHHhcccc
Confidence 3468887888888999999999999763
No 25
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.92 E-value=0.011 Score=50.27 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=69.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHH--------HcCCCccCCHHHHHHhcCCCCCCCCCCCchHHHHHHHHHcCcCCCCccc
Q 018877 114 DQGHCGSCWAFGAVEALSDRFCI--------HFGMNLSLSVNDLLACCGFLCGDGCDGGYPISAWRYFVHHGVVTEECDP 185 (349)
Q Consensus 114 dQg~cGsCwAfA~~~~lE~~~~i--------~~~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yP 185 (349)
.||.-+-|-+||.+++|-..... .+.....+|+++|-++. -.+...++|.+..|....
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~----------~~~~~~i~y~ks~g~~~~---- 83 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTS----------LTPNQMIKYAKSQGRNPQ---- 83 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH------------B-HHHHHHHHHHTTEEEE----
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcC----------CCHHHHHHHHHHcCcchh----
Confidence 58999999999999987655321 11134455666665543 234577888777664211
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccccccccccceeeeeeeeEeCCCHHHHHHHHHhCCCEEEEEEcccccccCCCcee
Q 018877 186 YFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVY 265 (349)
Q Consensus 186 Y~~~~~~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy 265 (349)
|.. -..+.+++++.+.++-|+.+.....+ +.
T Consensus 84 ~~n-----------------------------------------~~~s~~eV~~~~~~nk~i~i~~~~v~------~~-- 114 (175)
T PF05543_consen 84 YNN-----------------------------------------RMPSFDEVKKLIDNNKGIAILADRVE------QT-- 114 (175)
T ss_dssp EEC-----------------------------------------S---HHHHHHHHHTT-EEEEEEEETT------SC--
T ss_pred Hhc-----------------------------------------CCCCHHHHHHHHHcCCCeEEEecccc------cC--
Confidence 100 01245889999988888888766321 11
Q ss_pred ecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCCC
Q 018877 266 KHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNR 301 (349)
Q Consensus 266 ~~~~~~~~~~Hav~IVGyg~~~~g~~ywivkNSWG~ 301 (349)
.....+|||+||||-.-.+|.++.++=|=|-.
T Consensus 115 ----~~~~~gHAlavvGya~~~~g~~~y~~WNPW~~ 146 (175)
T PF05543_consen 115 ----NGPHAGHALAVVGYAKPNNGQKTYYFWNPWWN 146 (175)
T ss_dssp ----TTB--EEEEEEEEEEEETTSEEEEEEE-TT-S
T ss_pred ----CCCccceeEEEEeeeecCCCCeEEEEeCCccC
Confidence 12235899999999844667899999888854
No 26
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.86 E-value=0.014 Score=47.60 Aligned_cols=58 Identities=33% Similarity=0.500 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHhCCCEEEEEEcccccccCCCceeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccC
Q 018877 232 SDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQW 299 (349)
Q Consensus 232 ~~~~~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~~~g~~ywivkNSW 299 (349)
.+.+.|+++|.++.||.+.+...-. ...+..+.. ..++|.|+|+||+ + ++ +++|-.+|
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~~~~--~~~~~~~~~----~~~~H~vvi~Gy~-~-~~--~~~v~DP~ 144 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNSGWR--PPNGDGYDG----TYGGHYVVIIGYD-E-DG--YVYVNDPW 144 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEETTSS----TTEEEEE-----TTEEEEEEEEE--S-SE---EEEE-TT
T ss_pred CcHHHHHHHHHCCCcEEEEEEcccc--cCCCCCcCC----CcCCEEEEEEEEe-C-CC--EEEEeCCC
Confidence 3568999999999999999984210 001112211 2358999999998 3 22 78888776
No 27
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=91.43 E-value=0.74 Score=40.77 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHhCCCEEEEEEcccccc--cCCCceee----cCC--CCccCCcEEEEEEeCCCCCCccEEEEEc
Q 018877 232 SDPEDIMAEIYKNGPVEVSFTVYEDFA--HYKSGVYK----HIT--GDVMGGHAVKLIGWGTSDDGEDYWILAN 297 (349)
Q Consensus 232 ~~~~~ik~~l~~~gPV~v~i~v~~~f~--~y~~Giy~----~~~--~~~~~~Hav~IVGyg~~~~g~~ywivkN 297 (349)
-..++|..+|..+||+.+-++... .. .-++-... ... .....||-|+|+||+ -..+-+++||
T Consensus 111 vs~~ei~~hl~~g~~aIvLVd~~~-L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd---~~~~~~~yrd 180 (212)
T PF09778_consen 111 VSIQEIIEHLSSGGPAIVLVDASL-LHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYD---AATKEFEYRD 180 (212)
T ss_pred ccHHHHHHHHhCCCcEEEEEcccc-ccChhhcccccccccccccCCCCCccEEEEEEEeec---CCCCeEEEeC
Confidence 467899999999998888888631 00 00121111 111 134569999999999 2334466665
No 28
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=89.66 E-value=0.96 Score=42.48 Aligned_cols=56 Identities=16% Similarity=0.389 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCEEEEEEcccccccCCCceeecCCCCccCCcEEEEEEeCCCCCCccEEEEEc
Q 018877 234 PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILAN 297 (349)
Q Consensus 234 ~~~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~~~g~~ywivkN 297 (349)
.+.|++.|.++.||.+.++++ +..|...-| .....+|.|+|+||+ + ++..+.++-+
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~--~lpy~~~~~----~~~~~~H~i~v~G~d-~-~~~~~~v~D~ 133 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY--YLPYRPNYY----KKHHADHYIVVYGYD-E-EEDVFYVSDP 133 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc--cCCCCcccc----ccccCCcEEEEEEEe-C-CCCEEEEEcC
Confidence 357888888877999998864 223333222 122358999999998 3 3455666533
No 29
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.65 E-value=0.8 Score=39.21 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHhCCCEEEEEEcccccccCCCceeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCC
Q 018877 231 NSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWN 300 (349)
Q Consensus 231 ~~~~~~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~~~g~~ywivkNSWG 300 (349)
..++.+|+..|.++.||.+-... |-. ..-|+|+|+||+ +.++..-++||
T Consensus 120 Gksl~~ik~ql~kg~PV~iw~T~---~~~-------------~s~H~v~itgyD-----k~n~yynDpyG 168 (195)
T COG4990 120 GKSLSDIKGQLLKGRPVVIWVTN---FHS-------------YSIHSVLITGYD-----KYNIYYNDPYG 168 (195)
T ss_pred CCcHHHHHHHHhcCCcEEEEEec---ccc-------------cceeeeEeeccc-----ccceEeccccc
Confidence 35789999999999999887764 322 236999999999 45667777775
No 30
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=88.98 E-value=7.8 Score=32.61 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhCCCEEEEEEcccccccCCCceeecCCCCccCCcEEEEEEeC
Q 018877 233 DPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWG 284 (349)
Q Consensus 233 ~~~~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~~~~~~~~Hav~IVGyg 284 (349)
+.+.+...|.++||+-++.... ++....|+++|+|-+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P---------------~~~~~~H~~ViTGI~ 133 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAP---------------GDSWVAHASVITGID 133 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCC---------------CCcceeeEEEEEeec
Confidence 4588999999999999985542 122247999999987
No 31
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=76.10 E-value=9 Score=30.87 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=31.0
Q ss_pred HHHHHHhCCCEEEEEEcccccccCCCceeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccC
Q 018877 237 IMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQW 299 (349)
Q Consensus 237 ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~~~g~~ywivkNSW 299 (349)
+++.|....||.+.+... . .....+|.|+|+||+ . .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--------~------~~~~~gH~vVv~g~~-~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--------V------SITPSGHAMVVIGYD-R---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC--------c------ccCCCCeEEEEEEEc-C---CCCEEEECCC
Confidence 778888889999988751 0 112258999999997 2 2335666665
No 32
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=67.55 E-value=12 Score=35.25 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.5
Q ss_pred cCCcEEEEEEeCCCCC--CccEEEEEccCCC
Q 018877 273 MGGHAVKLIGWGTSDD--GEDYWILANQWNR 301 (349)
Q Consensus 273 ~~~Hav~IVGyg~~~~--g~~ywivkNSWG~ 301 (349)
..+||-.|++.. ..+ +.....+||-||.
T Consensus 234 ~~~HaY~Vl~~~-~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 234 VKGHAYSVLDVR-EVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred ccCcceEEeEEE-EEccCceEEEEecCCccC
Confidence 358999999998 444 7889999999995
No 33
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=52.98 E-value=58 Score=28.31 Aligned_cols=50 Identities=32% Similarity=0.710 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCEEEEEEcccccccCCCceeecCCCCccCCcEEEEEEeCCCCCCccEEEEEccCCCCCC--CCceEE
Q 018877 235 EDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWG--ADGYFK 310 (349)
Q Consensus 235 ~~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~~~g~~ywivkNSWG~~WG--~~Gy~~ 310 (349)
+.|+.+|.++.||...-.-.. ++||.+|=||. ...||- --|| || .+|||+
T Consensus 141 ~~i~~el~~~rPV~~~g~~~~------------------~GHawViDGy~----~~~~~H--~NwG--W~G~~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSKS------------------GGHAWVIDGYD----SDGYFH--CNWG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEETT------------------EEEEEEEEEEE----SSSEEE--EE-S--STTTT-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecCC------------------CCeEEEEcCcc----CCCeEE--EeeC--ccCCCCCccC
Confidence 568889999999986543211 18999999996 234554 4455 55 468875
No 34
>KOG4621 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.50 E-value=1.1e+02 Score=24.87 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhCCCEEEEEEcc----ccc--ccCCCceeecCC------CCccCCcEEEEEEeCCCCCCccEEEEEc
Q 018877 233 DPEDIMAEIYKNGPVEVSFTVY----EDF--AHYKSGVYKHIT------GDVMGGHAVKLIGWGTSDDGEDYWILAN 297 (349)
Q Consensus 233 ~~~~ik~~l~~~gPV~v~i~v~----~~f--~~y~~Giy~~~~------~~~~~~Hav~IVGyg~~~~g~~ywivkN 297 (349)
.+.+|...|+++.-|++.+--. -++ ...+++.+.+.. .....+|.|+|-||+ .-.+.+.++|
T Consensus 58 Si~dIqahLaqGnhiAIaLVdq~~Lhcdlceeplk~ccfspnghhcfcrtp~YqGHfiVi~GYd---~a~~c~~~nd 131 (167)
T KOG4621|consen 58 SIHDIQAHLAQGNHIAIALVDQDKLHCDLCEEPLKSCCFSPNGHHCFCRTPCYQGHFIVICGYD---AARDCFEIND 131 (167)
T ss_pred eHHHHHHHHhcCCeEEEEEecCCceehHHHHhHHHHhccCCCCccccccCCcccccEEEEeccc---cccCeEEEcC
Confidence 5678988888765666654211 122 113445553321 123469999999999 3345566655
No 35
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=32.59 E-value=1.2e+02 Score=28.62 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=21.9
Q ss_pred cCCcEEEEEEeCCCCCCcc--EEEEEccCCC
Q 018877 273 MGGHAVKLIGWGTSDDGED--YWILANQWNR 301 (349)
Q Consensus 273 ~~~Hav~IVGyg~~~~g~~--ywivkNSWG~ 301 (349)
..+||=.|++.. .-++.+ ...+||-||.
T Consensus 226 v~~HaYsVl~v~-~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 226 VKGHAYSVTDVR-EVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred ccCccEEEEEEE-EEecCCeEEEEEECCCCC
Confidence 358999999987 434445 8999999993
No 36
>PF09028 Mac-1: Mac 1; InterPro: IPR015117 The bacterial protein Mac 1 adopts an alpha/beta fold, with 14 beta strands and 9 alpha helices. The N-terminal domain is made up predominantly of alpha helices, whereas the C-terminal domain consists predominantly of beta sheets. Mac 1 blocks polymorphonuclear opsonophagocytosis, inhibits the production of reactive oxygen species and contains IgG endopeptidase activity. ; PDB: 1Y08_A 2AVW_C 2AU1_A.
Probab=21.17 E-value=1.6e+02 Score=27.93 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCEEEEEEcccccccCCCceeecCCCCccCCcEEEEEEeCCCCC
Q 018877 234 PEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDD 288 (349)
Q Consensus 234 ~~~ik~~l~~~gPV~v~i~v~~~f~~y~~Giy~~~~~~~~~~Hav~IVGyg~~~~ 288 (349)
.+.|+.+|..++.|+.+... ....++|+|++=|...+++
T Consensus 233 s~~ik~~L~~g~aigLs~~~----------------~n~~~~HiItlWGae~D~~ 271 (333)
T PF09028_consen 233 SEKIKEALDNGKAIGLSYSP----------------GNSSGNHIITLWGAEYDDN 271 (333)
T ss_dssp HHHHHHHHHTT-EEEEEE------------------SSTTS-EEEEEEEEEE-TT
T ss_pred HHHHHHHHhcCCEEEEEeec----------------CCCCCCcEEEEeeeEEcCC
Confidence 36789999888888766632 1122599999999775443
No 37
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=20.50 E-value=2.9e+02 Score=18.82 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=21.9
Q ss_pred EEEEEEeCCCC-CCccEEEEE-ccCC---CCCCCCceEEEEe
Q 018877 277 AVKLIGWGTSD-DGEDYWILA-NQWN---RSWGADGYFKIKR 313 (349)
Q Consensus 277 av~IVGyg~~~-~g~~ywivk-NSWG---~~WG~~Gy~~i~~ 313 (349)
-++++|+.... ....+-++| |+=| ++||.+|..++..
T Consensus 13 kIlv~G~~~~~~~~~~~~l~Rln~DGsLDttFg~~G~v~~d~ 54 (55)
T TIGR02608 13 KILVAGYVDNSSGNNDFVLARLNADGSLDTTFGTGGKVTFDL 54 (55)
T ss_pred cEEEEEEeecCCCcccEEEEEECCCCCccCCcCCCcEEEEeC
Confidence 36777776221 223344444 5555 5899999988753
Done!