Query 018878
Match_columns 349
No_of_seqs 165 out of 257
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.5 7E-12 2.4E-16 122.3 21.7 207 58-271 236-449 (460)
2 3mkt_A Multi antimicrobial ext 98.6 5.5E-08 1.9E-12 94.7 8.0 202 58-268 10-217 (460)
3 4gip_A Fusion glycoprotein F2; 6.8 2.8E+02 0.0095 21.1 2.5 30 95-125 43-72 (81)
4 2i68_A Protein EMRE; transmemb 5.5 1.1E+03 0.039 18.8 8.8 21 195-215 5-25 (137)
5 2l3i_A Aoxki4A, antimicrobial 3.4 8.1E+02 0.028 14.7 2.3 16 333-348 14-29 (30)
6 3cx5_D Cytochrome C1, heme pro 3.2 1.1E+03 0.036 21.4 4.2 34 204-237 191-226 (248)
7 1muk_A Minor core protein lamb 3.0 4.2E+02 0.014 29.0 1.4 31 82-112 883-913 (1267)
8 1pp9_D Cytochrome C-1, cytochr 3.0 1.2E+03 0.04 21.0 4.2 34 204-237 187-222 (241)
9 3b5d_A Multidrug transporter E 2.9 1.6E+03 0.056 16.7 8.0 20 195-214 5-24 (110)
10 2k9j_B Integrin beta-3; transm 2.8 1.2E+03 0.043 15.0 5.5 9 317-325 22-30 (43)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.45 E-value=7e-12 Score=122.34 Aligned_cols=207 Identities=12% Similarity=0.007 Sum_probs=165.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh
Q 018878 58 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 137 (349)
Q Consensus 58 ~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~ 137 (349)
.-|++++++.+.+.+++...+.+..|+.+++.+ +.++.|.|++++++.+++. .+...+..+..+..++...++|+++
T Consensus 236 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~~- 312 (460)
T 3mkt_A 236 ELIRLFRLGFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTKG- 312 (460)
T ss_dssp STTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCCT-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHH-
Confidence 347899999999999999999999999999999 8899999999999998888 8888999999999999987766555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHH
Q 018878 138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 217 (349)
Q Consensus 138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~ 217 (349)
.++.....++....+++.+...-...++++++++.+++..-..+.+.+++++...++.+++.+.....++.++++...
T Consensus 313 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 390 (460)
T 3mkt_A 313 --AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIF 390 (460)
T ss_dssp --TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344444466666666665554444777788887776654444467899999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------hChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018878 218 RSNDSLLVFSVIYIVMNVILIQS-------AGSVGLILANSLNMILRIIYSAIFIKHYFQG 271 (349)
Q Consensus 218 ~~~~~m~~~s~~fl~~~~~l~~~-------~G~~GlI~AN~~nM~lRi~~s~~fI~~~f~~ 271 (349)
..+.... .++.+..++++... +|..|..+|..+...++.+......+|..++
T Consensus 391 ~~~~~~~--~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 449 (460)
T 3mkt_A 391 HRTFISY--WVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQ 449 (460)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCS
T ss_pred HHHHHHH--HHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7665433 13444556668887 9999999999999999988877665555443
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=98.62 E-value=5.5e-08 Score=94.65 Aligned_cols=202 Identities=12% Similarity=0.066 Sum_probs=145.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchhHHHhhhhhhHHHHHHhhhhhhhhHHHHHhhhcCCCchhh
Q 018878 58 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 137 (349)
Q Consensus 58 ~~~~ll~l~~~~~~Qsi~K~lLTEGdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~Fsk~~~~~~~~~~ 137 (349)
.-|++++++.+.+.+++...+.+--|+.++++ .++++.|.|++++.+-. +...+...+..+..+..+|...++|+++
T Consensus 10 ~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~-~~~~~~~g~~~~~~~~is~~~g~~~~~~- 86 (460)
T 3mkt_A 10 EASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWL-PSILFGVGLLMALVPVVAQLNGAGRQHK- 86 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHH-HHHHHHHHHHHHHGGGCTTTTSSSSTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCChhH-
Confidence 35789999999999999999999999999999 68999999999999944 4455666777777777777665554333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCHHHHH
Q 018878 138 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 217 (349)
Q Consensus 138 ~~~~~~l~~~Lk~~~~igli~~~fG~~~s~~lL~ll~G~kW~~~~~~~~L~~yc~yi~~lA~NGi~EAf~~a~a~~~~l~ 217 (349)
.++.+...+.....++++... +...++++++++.++.-....+.+.+++++..+|+.+++.+..++.++..+.+...
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 87 --IPFEVHQGLILALLVSVPIIA-VLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred --HHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 555655566666666665433 24444555543322211111234568888899999999999999999999888766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh------hChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018878 218 RSNDSLLVFSVIYIVMNVILIQS------AGSVGLILANSLNMILRIIYSAIFIKHY 268 (349)
Q Consensus 218 ~~~~~m~~~s~~fl~~~~~l~~~------~G~~GlI~AN~~nM~lRi~~s~~fI~~~ 268 (349)
..+....+ +-+..+++++.. +|..|..+|..+...+-.+....++++.
T Consensus 164 ~~~~~~~~---~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 164 VIGFIGLL---LNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHHH---HHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH---HHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55554444 444555667753 7999999999998888888777776543
No 3
>4gip_A Fusion glycoprotein F2; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=6.83 E-value=2.8e+02 Score=21.14 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=22.7
Q ss_pred cchhHHHhhhhhhHHHHHHhhhhhhhhHHHH
Q 018878 95 NQAVYGLVDKLGSLVVRMVFLPFEESSYATF 125 (349)
Q Consensus 95 ~QGvY~lvsN~GSLvaR~lF~PIEEs~~~~F 125 (349)
+-=.-+-+++|-.+++|+ ++||+|+....=
T Consensus 43 ~~C~~~~v~~Ynktlt~l-L~Pi~daL~~I~ 72 (81)
T 4gip_A 43 SGCNITSISSYNATVTKL-LQPIGENLETIR 72 (81)
T ss_dssp CSCCCHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 334567789999999985 689999986543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=5.52 E-value=1.1e+03 Score=18.83 Aligned_cols=21 Identities=10% Similarity=-0.028 Sum_probs=12.6
Q ss_pred HHHHhhhHHHHHHHHhCCHHH
Q 018878 195 VVLAMNGTSEAFLHAVATEDQ 215 (349)
Q Consensus 195 ~~lA~NGi~EAf~~a~a~~~~ 215 (349)
.++.+.+++|+.-+......+
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~ 25 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSE 25 (137)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345677888888887776554
No 5
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=3.37 E-value=8.1e+02 Score=14.67 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=9.4
Q ss_pred HhHHHHHHHHHhhcCC
Q 018878 333 RERSFIYKIIRFRNHK 348 (349)
Q Consensus 333 ~er~~i~~~~~~~~~~ 348 (349)
+.|.+-+-+.++|.|.
T Consensus 14 kqrvlkrllamlrqha 29 (30)
T 2l3i_A 14 KQRVLKRLLAMLRQHA 29 (30)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4555555556677663
No 6
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=3.22 E-value=1.1e+03 Score=21.41 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHHHHHhCCHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 018878 204 EAFLHAVATEDQLKRSN--DSLLVFSVIYIVMNVIL 237 (349)
Q Consensus 204 EAf~~a~a~~~~l~~~~--~~m~~~s~~fl~~~~~l 237 (349)
-+|+.-++.|+...|.. .+.++|-+++.+.+|++
T Consensus 191 v~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y~~ 226 (248)
T 3cx5_D 191 TTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWV 226 (248)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888777655 44555555565555544
No 7
>1muk_A Minor core protein lambda 3; single subunit polymerase fold, fingers, PALM, thumb, right hand configuration, viral protein; 2.50A {Reovirus SP} SCOP: e.8.1.4 PDB: 1mwh_A* 1n1h_A* 1n35_A* 1n38_A* 1uon_A* 2cse_1
Probab=3.05 E-value=4.2e+02 Score=29.01 Aligned_cols=31 Identities=13% Similarity=0.394 Sum_probs=26.1
Q ss_pred hhhhhhhhccCCccchhHHHhhhhhhHHHHH
Q 018878 82 GEKLVLVWLDTPYNQAVYGLVDKLGSLVVRM 112 (349)
Q Consensus 82 Gdk~vl~~~~t~~~QGvY~lvsN~GSLvaR~ 112 (349)
-|.++.+.+.+..|||.|++.++.--++++-
T Consensus 883 s~P~i~S~YMP~GD~G~ys~l~~~r~~i~~~ 913 (1267)
T 1muk_A 883 SDPWIFSWYMPTGDLGMYSWISLIRPLMTRW 913 (1267)
T ss_dssp CCTTCBCTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeeeccCCCchhHHHHHHHHHHHHHHH
Confidence 3678888889999999999999988777743
No 8
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=2.99 E-value=1.2e+03 Score=21.02 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=22.3
Q ss_pred HHHHHHhCCHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 018878 204 EAFLHAVATEDQLKRSN--DSLLVFSVIYIVMNVIL 237 (349)
Q Consensus 204 EAf~~a~a~~~~l~~~~--~~m~~~s~~fl~~~~~l 237 (349)
-+|+.-++.|+...|.. .+.++|.+++.+.+|++
T Consensus 187 v~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y~~ 222 (241)
T 1pp9_D 187 CTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAM 222 (241)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888776655 45555666666665544
No 9
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=2.90 E-value=1.6e+03 Score=16.75 Aligned_cols=20 Identities=10% Similarity=-0.057 Sum_probs=13.2
Q ss_pred HHHHhhhHHHHHHHHhCCHH
Q 018878 195 VVLAMNGTSEAFLHAVATED 214 (349)
Q Consensus 195 ~~lA~NGi~EAf~~a~a~~~ 214 (349)
.++.+.++.|+.-+......
T Consensus 5 l~l~~a~~~e~~~~~~lK~s 24 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFS 24 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34567778888777665443
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=2.75 E-value=1.2e+03 Score=15.02 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 018878 317 SVGLTCFCI 325 (349)
Q Consensus 317 ~~g~~~~~~ 325 (349)
.+|..++++
T Consensus 22 liGl~lLli 30 (43)
T 2k9j_B 22 LIGLAALLI 30 (43)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345544333
Done!