BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018881
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 37/290 (12%)
Query: 47 FLPWLERKAGVEILSVLSIGKSAYGRSLFASEKLRTGDCILKVPYAAQLTPDNLHPKIKS 106
F WL+ + + + + G L A + + D IL+VP + PD + S
Sbjct: 9 FWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAA---S 65
Query: 107 LLGDEISNVAKLAIVILF--EQKMGKDSEWAPYISRLPQLEEMHNTIFWSKDELDLICPS 164
+G S + VILF ++ +DS W Y LPQ E +TI+WS++EL + S
Sbjct: 66 EIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQ--ETDSTIYWSEEELQELQGS 123
Query: 165 SLFEETVTKKDQIESEFLALE---------CFPEVFDHIKLKDFMHAYALVESRAWRSTK 215
L + TV+ K+ +++E L LE FP D + L DF A+ ++ SRA+ +
Sbjct: 124 QLLKTTVSVKEYVKNECLKLEQEIILPNKRLFP---DPVTLDDFFWAFGILRSRAFSRLR 180
Query: 216 GESL--IPFADFLNHDGLSEAVVLHDEDKQLSEVIA--DRDY----------APKEEVWI 261
E+L +P AD +NH S V D ++ DY E+V+I
Sbjct: 181 NENLVVVPMADLINH---SAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYI 237
Query: 262 TYG-KFSNSTLLLDFGFSLPYNSHDEVQIQIKVPDHDPLLEVKLEVLQSH 310
Y SN+ L LD+GF P + + +++ + DP + KL+V +S+
Sbjct: 238 QYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESN 287
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 37/290 (12%)
Query: 47 FLPWLERKAGVEILSVLSIGKSAYGRSLFASEKLRTGDCILKVPYAAQLTPDNLHPKIKS 106
F WL+ + + + + G L A + + D IL+VP + PD + S
Sbjct: 13 FWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAA---S 69
Query: 107 LLGDEISNVAKLAIVILF--EQKMGKDSEWAPYISRLPQLEEMHNTIFWSKDELDLICPS 164
+G S + VILF ++ +DS W Y LPQ E +TI+WS++EL + S
Sbjct: 70 EIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQ--ETDSTIYWSEEELQELQGS 127
Query: 165 SLFEETVTKKDQIESEFLALE---------CFPEVFDHIKLKDFMHAYALVESRAWRSTK 215
L + TV+ K+ +++E L LE FP D + L DF A+ ++ SRA+ +
Sbjct: 128 QLLKTTVSVKEYVKNECLKLEQEIILPNKRLFP---DPVTLDDFFWAFGILRSRAFSRLR 184
Query: 216 GESL--IPFADFLNHDGLSEAVVLHDEDKQLSEVIA--DRDY----------APKEEVWI 261
E+L +P AD +NH S V D ++ DY E+V+I
Sbjct: 185 NENLVVVPMADLINH---SAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYI 241
Query: 262 TYG-KFSNSTLLLDFGFSLPYNSHDEVQIQIKVPDHDPLLEVKLEVLQSH 310
Y SN+ L LD+GF P + + +++ + DP + KL+V +S+
Sbjct: 242 QYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESN 291
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3
Length = 497
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 131/299 (43%), Gaps = 37/299 (12%)
Query: 41 DEYDGDFLPWL-ERKAGVEILSVLSIGKSAYGRSLFASEKLRTGDCILKVPYAAQLTPDN 99
++Y D W E A VE ++ + +G L A+ ++ + L VP T ++
Sbjct: 75 EDYFPDLXKWASENGASVEGFEXVNFKEEGFG--LRATRDIKAEELFLWVPRKLLXTVES 132
Query: 100 LHPKIKSLLG-----DEI----SNVAKLAIVILFEQKMGKDSEWAPYISRLPQLEEMHNT 150
S+LG D I N+A LA +L E + +S W PYI LP E
Sbjct: 133 AK---NSVLGPLYSQDRILQAXGNIA-LAFHLLCE-RASPNSFWQPYIQTLPS--EYDTP 185
Query: 151 IFWSKDELDLICPSS----LFEETVTKKDQIESEFLALECFPE-----VFDHIKLKDFMH 201
+++ +DE+ + + +F + Q + ++ P + D +D+
Sbjct: 186 LYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDSFTYEDYRW 245
Query: 202 AYALVESRAWR------STKGESLIPFADFLNH-DGLSEAVVLHDEDKQLSEVIADRDYA 254
A + V +R + S +LIP D NH +GL ++D+ E +A +D+
Sbjct: 246 AVSSVXTRQNQIPTEDGSRVTLALIPLWDXCNHTNGLITTGYNLEDDR--CECVALQDFR 303
Query: 255 PKEEVWITYGKFSNSTLLLDFGFSLPYNSHDEVQIQIKVPDHDPLLEVKLEVLQSHCLP 313
E+++I YG SN+ ++ GF NSHD V+I++ V D L K EVL +P
Sbjct: 304 AGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAXKAEVLARAGIP 362
>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310
pdb|3QXY|B Chain B, Human Setd6 In Complex With Rela Lys310
pdb|3RC0|A Chain A, Human Setd6 In Complex With Rela Lys310 Peptide
pdb|3RC0|B Chain B, Human Setd6 In Complex With Rela Lys310 Peptide
Length = 449
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 122/276 (44%), Gaps = 40/276 (14%)
Query: 47 FLPWLERKAGVEILSVLSIGK--SAYGRSLFASEKLRTGDCILKVPYAAQLTP-----DN 99
FL W R+ G+E+ +++ + + G + A E ++ G+ + VP AA L+
Sbjct: 25 FLSWC-RRVGLELSPKVAVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCSIGG 83
Query: 100 LHPKIKSLLGDEISNVAKLAIVILFEQKMGKDSEWAPYISRLPQLEEMHNTIFWSKDELD 159
L + + L + V L ++ Q S W PY + P+L + + +FW ++E
Sbjct: 84 LLERERVALQSQSGWVPLLLALLHELQ--APASRWRPYFALWPELGRLEHPMFWPEEERR 141
Query: 160 LICPSSLFEETVTKK-DQIESEFLA-----LECFPEVFD-HIKLKDFMHA-YALVESRAW 211
+ + E V K I SE+ + +E P++F ++ + H ALV + ++
Sbjct: 142 CLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFSLRVRSLELYHQLVALVMAYSF 201
Query: 212 RST----------KGESLIPFADFLNHDGLSEAVVLHDEDKQLS----EVIADRDYAPKE 257
+ ++P AD LNH + H+ + + S ++A +
Sbjct: 202 QEPLEEEEDEKEPNSPVMVPAADILNH------LANHNANLEYSANCLRMVATQPIPKGH 255
Query: 258 EVWITYGKFSNSTLLLDFGFSLPY--NSHDEVQIQI 291
E++ TYG+ +N L+ +GF PY N+ D IQ+
Sbjct: 256 EIFNTYGQMANWQLIHMYGFVEPYPDNTDDTADIQM 291
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 233 EAVVLHDEDKQLSEVIADRDYAPKEEVWITYGKFSNSTLLLDFGFSLPYNSHDEVQIQIK 292
+A+ +H ED++ ++ R P EVWI ++ + DFG +K
Sbjct: 33 QAIAVHPEDERYRHLLGKRARIPLTEVWIPI--LADPAVEKDFGTG-----------ALK 79
Query: 293 V-PDHDPLLEVKLEVLQSHCL 312
V P HDPL E+ + H L
Sbjct: 80 VTPAHDPL---DYEIGERHGL 97
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 233 EAVVLHDEDKQLSEVIADRDYAPKEEVWITYGKFSNSTLLLDFGFSLPYNSHDEVQIQIK 292
+A+ +H ED++ ++ R P EVWI ++ + DFG +K
Sbjct: 33 QAIAVHPEDERYRHLLGKRARIPLTEVWIPI--LADPAVEKDFGTG-----------ALK 79
Query: 293 V-PDHDPLLEVKLEVLQSHCL 312
V P HDPL E+ + H L
Sbjct: 80 VTPAHDPL---DYEIGERHGL 97
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 233 EAVVLHDEDKQLSEVIADRDYAPKEEVWITYGKFSNSTLLLDFGFSLPYNSHDEVQIQIK 292
+A+ +H ED++ ++ R P EVWI ++ + DFG +K
Sbjct: 224 QAIAVHPEDERYRHLLGKRARIPLTEVWIPI--LADPAVEKDFGTG-----------ALK 270
Query: 293 V-PDHDPLLEVKLEVLQSHCL 312
V P HDPL E+ + H L
Sbjct: 271 VTPAHDPL---DYEIGERHGL 288
>pdb|3VUO|A Chain A, Crystal Structure Of Nontoxic Nonhemagglutinin
Subcomponent (Ntnha) From Clostridium Botulinum Serotype
D Strain 4947
Length = 1196
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 277 FSLPYNSHDEVQIQIKVPDHDPLLEVKLEVLQSHCLPRARDVNGFKSSNDSFTIKLVAST 336
+ +PYN +E + + D+ PL + +E + S +P D+N +K ++D + ST
Sbjct: 434 YKIPYN--EEYEYRFNDSDNFPLNNISIEEVDS--IPEIIDINPYKDNSDDLLFTQITST 489
>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Amppnp
pdb|3KVG|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Amppnp
pdb|3L4I|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Adp And Inorganic Phosphate
pdb|3L4I|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Adp And Inorganic Phosphate
pdb|3L6Q|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 From
Cryptosporidium Parvum (Cgd2_20)
pdb|3L6Q|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70 From
Cryptosporidium Parvum (Cgd2_20)
Length = 400
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 8 TGAWCFRHRRPHCAKAKLTFSSSSESKVLHSIDDEYDG 45
T A R R C +AK T SSS+++ + +D Y+G
Sbjct: 272 TNARALRRLRTQCERAKRTLSSSTQATI--ELDSLYEG 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,027,683
Number of Sequences: 62578
Number of extensions: 400785
Number of successful extensions: 1081
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 14
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)