Query 018881
Match_columns 349
No_of_seqs 216 out of 1379
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:49:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1338 Uncharacterized conser 100.0 3E-37 6.4E-42 289.6 14.6 292 42-337 7-339 (466)
2 KOG1337 N-methyltransferase [G 100.0 1.7E-31 3.7E-36 268.6 16.5 202 116-320 112-333 (472)
3 PF00856 SET: SET domain; Int 99.7 3.1E-18 6.8E-23 145.4 5.2 51 214-264 110-162 (162)
4 smart00317 SET SET (Su(var)3-9 98.4 2E-07 4.4E-12 74.9 3.9 46 218-263 69-116 (116)
5 KOG1085 Predicted methyltransf 95.7 0.0099 2.2E-07 55.3 3.4 49 224-273 335-386 (392)
6 KOG2589 Histone tail methylase 95.4 0.016 3.4E-07 55.7 3.9 47 217-265 192-238 (453)
7 KOG4442 Clathrin coat binding 95.1 0.021 4.6E-07 59.0 3.9 40 225-264 196-237 (729)
8 KOG1079 Transcriptional repres 92.4 0.13 2.8E-06 53.2 3.8 43 222-264 665-709 (739)
9 COG2940 Proteins containing SE 90.8 0.13 2.9E-06 52.3 2.1 45 221-265 404-450 (480)
10 KOG1080 Histone H3 (Lys4) meth 90.2 0.27 5.9E-06 53.9 3.8 45 221-265 938-984 (1005)
11 smart00317 SET SET (Su(var)3-9 88.3 0.47 1E-05 37.3 3.1 32 68-99 8-39 (116)
12 PF09273 Rubis-subs-bind: Rubi 85.0 0.94 2E-05 36.8 3.2 26 293-318 1-26 (128)
13 KOG1082 Histone H3 (Lys9) meth 82.4 1.2 2.6E-05 43.7 3.3 43 225-267 275-323 (364)
14 KOG1083 Putative transcription 77.6 2.2 4.8E-05 46.6 3.5 44 224-267 1252-1297(1306)
15 KOG1141 Predicted histone meth 52.1 7.2 0.00016 41.8 1.3 53 224-276 1191-1253(1262)
16 KOG2084 Predicted histone tail 48.2 26 0.00057 34.8 4.7 61 215-277 198-265 (482)
17 COG1188 Ribosome-associated he 44.7 16 0.00034 29.1 1.8 54 194-266 9-62 (100)
18 KOG2461 Transcription factor B 44.7 19 0.00042 35.8 3.0 34 243-276 122-155 (396)
19 KOG1338 Uncharacterized conser 38.0 6.5 0.00014 38.7 -1.4 76 216-295 269-348 (466)
20 TIGR02059 swm_rep_I cyanobacte 31.7 85 0.0018 24.9 4.1 28 238-265 70-97 (101)
21 KOG1085 Predicted methyltransf 30.9 39 0.00084 32.0 2.4 28 67-94 263-290 (392)
22 TIGR03586 PseI pseudaminic aci 25.2 72 0.0016 30.9 3.3 51 36-86 235-290 (327)
23 PF08666 SAF: SAF domain; Int 24.6 46 0.001 23.1 1.4 14 73-86 3-16 (63)
24 smart00592 BRK domain in trans 23.5 89 0.0019 21.0 2.5 34 26-59 7-40 (45)
No 1
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3e-37 Score=289.63 Aligned_cols=292 Identities=33% Similarity=0.513 Sum_probs=239.9
Q ss_pred ccHhhHHHHHhhcCCceeccceEecc-----CCceeEEEEcCCCCCCCEEEEecccCccCCCCcc-----hHHHhhhccC
Q 018881 42 EYDGDFLPWLERKAGVEILSVLSIGK-----SAYGRSLFASEKLRTGDCILKVPYAAQLTPDNLH-----PKIKSLLGDE 111 (349)
Q Consensus 42 ~~~~~l~~Wl~~~G~~~~~~~v~i~~-----~~~GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~-----~~l~~~l~~~ 111 (349)
+....|+.|++..+..+.++++.+.+ ...|+|++|+++|++||.++.+|++++++..+.. ++..+++-++
T Consensus 7 d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~Lne 86 (466)
T KOG1338|consen 7 DLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLLNE 86 (466)
T ss_pred cHHHHHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHhhc
Confidence 34788999999999777889888764 1248999999999999999999999999988742 2333433378
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCchHHHhhCCCCCCCCCccCCChhhhhhcCCCcHHHHHHHHHHHHHHHHHH-----hhc
Q 018881 112 ISNVAKLAIVILFEQKMGKDSEWAPYISRLPQLEEMHNTIFWSKDELDLICPSSLFEETVTKKDQIESEFLA-----LEC 186 (349)
Q Consensus 112 ~~~~~~Lal~Ll~E~~~g~~S~w~pYl~~LP~~~~~~~p~~w~~~el~~L~gt~l~~~~~~~~~~~~~~y~~-----l~~ 186 (349)
.+.|..|++.|++|...+.+|+|+||++.+|++.++++|+||+++|++.|..+..+++..++.+.++++|.. .+.
T Consensus 87 ~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~i~pf~~~ 166 (466)
T KOG1338|consen 87 VGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFVIQPFKQH 166 (466)
T ss_pred CCcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999877779999999999999999999999999999886666677788889999999988 267
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcccc----------------CCCCceeeeecccCCCCCC-CCeEEEEcCCCCeEEEEE
Q 018881 187 FPEVFDHIKLKDFMHAYALVESRAWR----------------STKGESLIPFADFLNHDGL-SEAVVLHDEDKQLSEVIA 249 (349)
Q Consensus 187 ~p~~~~~~t~e~f~wA~~~V~SRaf~----------------~~~~~~LvP~~Dm~NH~~~-~~~~~~~d~~~~~~~l~a 249 (349)
+|.+|..+++|+|..+++++.+.+|. +....+|+|.+||+||+.. .|+..+|+. +|+.|+|
T Consensus 167 ~p~vfs~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~--NcL~mva 244 (466)
T KOG1338|consen 167 CPIVFSRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYED--NCLEMVA 244 (466)
T ss_pred CcchhcccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccC--cceeeee
Confidence 89999899999999999999999998 1246799999999999986 788888875 6999999
Q ss_pred ccCCCCCCeeecccCCCChHHHHHhCCCCCCC---------CCCcEEEEeccCCCCCccHHHHHHHHHhCCCCCcccccc
Q 018881 250 DRDYAPKEEVWITYGKFSNSTLLLDFGFSLPY---------NSHDEVQIQIKVPDHDPLLEVKLEVLQSHCLPRARDVNG 320 (349)
Q Consensus 250 ~~~i~~GeEv~i~YG~~sN~~LL~~YGFv~~~---------Np~D~v~l~l~~~~~d~~~~~k~~~L~~~gl~~~~~~~~ 320 (349)
+|+|++||||+++||-++|. |++||.+.-. -=+|.+++-.+++.+++.+..|.-+++.++..+-.+.+-
T Consensus 245 ~r~iekgdev~n~dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ql~nt~teld~~e 322 (466)
T KOG1338|consen 245 DRNIEKGDEVDNSDGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILLQLHNTRTELDINE 322 (466)
T ss_pred cCCCCCccccccccccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHHHhccchhhhhhHH
Confidence 99999999999999999988 7777766432 114555566678888999999988888888877554433
Q ss_pred cccCCCchhHHHhhhHH
Q 018881 321 FKSSNDSFTIKLVASTL 337 (349)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ 337 (349)
+-..=+-||-++.+|..
T Consensus 323 ~~~syd~ftkkE~~p~~ 339 (466)
T KOG1338|consen 323 FHSSYDTFTKKEVKPAI 339 (466)
T ss_pred HHHhhhhhhhccccccc
Confidence 33444667776655544
No 2
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.97 E-value=1.7e-31 Score=268.65 Aligned_cols=202 Identities=32% Similarity=0.572 Sum_probs=178.4
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHhhCCCCCCCCCccCCChhhhhhcCCCcHHHHHHHHHHHHHHHHHH----hhcCCCCC
Q 018881 116 AKLAIVILFEQKMGKDSEWAPYISRLPQLEEMHNTIFWSKDELDLICPSSLFEETVTKKDQIESEFLA----LECFPEVF 191 (349)
Q Consensus 116 ~~Lal~Ll~E~~~g~~S~w~pYl~~LP~~~~~~~p~~w~~~el~~L~gt~l~~~~~~~~~~~~~~y~~----l~~~p~~~ 191 (349)
..|+++++.+...+..|.|++|+..||.. .++|++|..+++..|.+++....+..++..++..+.. +..++..+
T Consensus 112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~~--~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (472)
T KOG1337|consen 112 IALALFLLLEWAHGEISKWKPYISTLPSQ--YNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQSHPSLF 189 (472)
T ss_pred HHHHHHHHHhhhccccccchhhhhhchhh--cCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHhccccc
Confidence 67899999999888889999999999996 4789999999999999999999888877777764433 34444433
Q ss_pred -----CCCCHHHHHHHHHHHHhcccc-----------CCCCceeeeecccCCCCCCCCeEEEEcCCCCeEEEEEccCCCC
Q 018881 192 -----DHIKLKDFMHAYALVESRAWR-----------STKGESLIPFADFLNHDGLSEAVVLHDEDKQLSEVIADRDYAP 255 (349)
Q Consensus 192 -----~~~t~e~f~wA~~~V~SRaf~-----------~~~~~~LvP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~~~i~~ 255 (349)
+.+++++|.||+++|.||+|+ .....+|+|++||+||++.. ....|+..++.+.+++.+++++
T Consensus 190 ~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~~~l~~~~~v~~ 268 (472)
T KOG1337|consen 190 GSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEAVELVAERDVSA 268 (472)
T ss_pred cccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCcEEEEEeeeecC
Confidence 338899999999999999999 13567999999999999987 5667777667999999999999
Q ss_pred CCeeecccCCCChHHHHHhCCCCCCCCCCcEEEEeccCCCCCccHHHHHHHHHhCCCCCcccccc
Q 018881 256 KEEVWITYGKFSNSTLLLDFGFSLPYNSHDEVQIQIKVPDHDPLLEVKLEVLQSHCLPRARDVNG 320 (349)
Q Consensus 256 GeEv~i~YG~~sN~~LL~~YGFv~~~Np~D~v~l~l~~~~~d~~~~~k~~~L~~~gl~~~~~~~~ 320 (349)
||||||+||+++|.+||++|||+.++||+|.|.+.+.++..|+....|...+.++++..++.+.-
T Consensus 269 geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (472)
T KOG1337|consen 269 GEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSI 333 (472)
T ss_pred CCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999988733
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.72 E-value=3.1e-18 Score=145.35 Aligned_cols=51 Identities=41% Similarity=0.563 Sum_probs=44.7
Q ss_pred CCCceeeeecccCCCCCCCCeEEEEc--CCCCeEEEEEccCCCCCCeeecccC
Q 018881 214 TKGESLIPFADFLNHDGLSEAVVLHD--EDKQLSEVIADRDYAPKEEVWITYG 264 (349)
Q Consensus 214 ~~~~~LvP~~Dm~NH~~~~~~~~~~d--~~~~~~~l~a~~~i~~GeEv~i~YG 264 (349)
....+|+|++||+||++.+|+.+.++ .++++++++|.++|++|||||++||
T Consensus 110 ~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 110 RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 35689999999999999999998887 5667999999999999999999999
No 4
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.42 E-value=2e-07 Score=74.90 Aligned_cols=46 Identities=30% Similarity=0.310 Sum_probs=40.6
Q ss_pred eeeeecccCCCCCCCCeEEEEcCCCC--eEEEEEccCCCCCCeeeccc
Q 018881 218 SLIPFADFLNHDGLSEAVVLHDEDKQ--LSEVIADRDYAPKEEVWITY 263 (349)
Q Consensus 218 ~LvP~~Dm~NH~~~~~~~~~~d~~~~--~~~l~a~~~i~~GeEv~i~Y 263 (349)
.+.|+++++||++.+|+.+.+...++ .+.++|.|+|++||||+++|
T Consensus 69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 48899999999999999987765444 59999999999999999998
No 5
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=95.66 E-value=0.0099 Score=55.26 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=39.2
Q ss_pred ccCCCCCCCCeEEE---EcCCCCeEEEEEccCCCCCCeeecccCCCChHHHHH
Q 018881 224 DFLNHDGLSEAVVL---HDEDKQLSEVIADRDYAPKEEVWITYGKFSNSTLLL 273 (349)
Q Consensus 224 Dm~NH~~~~~~~~~---~d~~~~~~~l~a~~~i~~GeEv~i~YG~~sN~~LL~ 273 (349)
-++||+-.+|+... .|. ...+.++|.++|.+|||++..||++|-+-++.
T Consensus 335 RLINHS~~gNl~TKvv~Idg-~pHLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 335 RLINHSVRGNLKTKVVEIDG-SPHLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred hhhcccccCcceeeEEEecC-CceEEEEeccccccchhhhhhccccchhHHhh
Confidence 48999998886543 333 24789999999999999999999998776543
No 6
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=95.41 E-value=0.016 Score=55.69 Aligned_cols=47 Identities=32% Similarity=0.379 Sum_probs=38.6
Q ss_pred ceeeeecccCCCCCCCCeEEEEcCCCCeEEEEEccCCCCCCeeecccCC
Q 018881 217 ESLIPFADFLNHDGLSEAVVLHDEDKQLSEVIADRDYAPKEEVWITYGK 265 (349)
Q Consensus 217 ~~LvP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~~~i~~GeEv~i~YG~ 265 (349)
.-|=|.+ ++||++.+||.+.-.. .+...+++.|||++||||+--||.
T Consensus 192 LwLGPaa-fINHDCrpnCkFvs~g-~~tacvkvlRDIePGeEITcFYgs 238 (453)
T KOG2589|consen 192 LWLGPAA-FINHDCRPNCKFVSTG-RDTACVKVLRDIEPGEEITCFYGS 238 (453)
T ss_pred heeccHH-hhcCCCCCCceeecCC-CceeeeehhhcCCCCceeEEeecc
Confidence 4566665 9999999999864443 247889999999999999999996
No 7
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.021 Score=58.97 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=31.7
Q ss_pred cCCCCCCCCeEEE-EcC-CCCeEEEEEccCCCCCCeeecccC
Q 018881 225 FLNHDGLSEAVVL-HDE-DKQLSEVIADRDYAPKEEVWITYG 264 (349)
Q Consensus 225 m~NH~~~~~~~~~-~d~-~~~~~~l~a~~~i~~GeEv~i~YG 264 (349)
++||++++|+.+. |.. +.-.+-+.|.+.|++||||+..|+
T Consensus 196 FiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYq 237 (729)
T KOG4442|consen 196 FINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQ 237 (729)
T ss_pred hhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecc
Confidence 8999999998652 222 223566889999999999999998
No 8
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=92.43 E-value=0.13 Score=53.19 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=34.8
Q ss_pred ecccCCCCCCCCeEEE--EcCCCCeEEEEEccCCCCCCeeecccC
Q 018881 222 FADFLNHDGLSEAVVL--HDEDKQLSEVIADRDYAPKEEVWITYG 264 (349)
Q Consensus 222 ~~Dm~NH~~~~~~~~~--~d~~~~~~~l~a~~~i~~GeEv~i~YG 264 (349)
.+-++||+..+|+... .....+.+-+.|.|.|.+|||||..|+
T Consensus 665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeec
Confidence 4468999999997643 333446788999999999999999998
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=90.84 E-value=0.13 Score=52.28 Aligned_cols=45 Identities=27% Similarity=0.262 Sum_probs=37.6
Q ss_pred eecccCCCCCCCCeEEEEcCCCC--eEEEEEccCCCCCCeeecccCC
Q 018881 221 PFADFLNHDGLSEAVVLHDEDKQ--LSEVIADRDYAPKEEVWITYGK 265 (349)
Q Consensus 221 P~~Dm~NH~~~~~~~~~~d~~~~--~~~l~a~~~i~~GeEv~i~YG~ 265 (349)
.+.=++||+..+|+........| .+..++.++|.+||||+++||.
T Consensus 404 ~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 404 DVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred cccceeecCCCCCcceecccccccceeeecccccchhhhhhcccccc
Confidence 34448999999999887666555 6778899999999999999996
No 10
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=90.24 E-value=0.27 Score=53.85 Aligned_cols=45 Identities=24% Similarity=0.249 Sum_probs=35.8
Q ss_pred eecccCCCCCCCCeEEEE--cCCCCeEEEEEccCCCCCCeeecccCC
Q 018881 221 PFADFLNHDGLSEAVVLH--DEDKQLSEVIADRDYAPKEEVWITYGK 265 (349)
Q Consensus 221 P~~Dm~NH~~~~~~~~~~--d~~~~~~~l~a~~~i~~GeEv~i~YG~ 265 (349)
=++=++||++.+||.... -++...++++|.|+|.+||||+-+|--
T Consensus 938 niAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF 984 (1005)
T KOG1080|consen 938 NIARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKF 984 (1005)
T ss_pred chhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccc
Confidence 356689999999986532 233348999999999999999999974
No 11
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=88.30 E-value=0.47 Score=37.30 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=26.8
Q ss_pred CCceeEEEEcCCCCCCCEEEEecccCccCCCC
Q 018881 68 SAYGRSLFASEKLRTGDCILKVPYAAQLTPDN 99 (349)
Q Consensus 68 ~~~GrGl~A~~~I~~ge~ll~IP~~~~ls~~~ 99 (349)
.+.|+||+|+++|++|+.|+..+-..+.....
T Consensus 8 ~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~ 39 (116)
T smart00317 8 PGKGWGVRATEDIPKGEFIGEYVGEIITSEEA 39 (116)
T ss_pred CCCcEEEEECCccCCCCEEEEEEeEEECHHHH
Confidence 36799999999999999999999877765443
No 12
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=84.95 E-value=0.94 Score=36.83 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=21.0
Q ss_pred CCCCCccHHHHHHHHHhCCCCCcccc
Q 018881 293 VPDHDPLLEVKLEVLQSHCLPRARDV 318 (349)
Q Consensus 293 ~~~~d~~~~~k~~~L~~~gl~~~~~~ 318 (349)
++++||+++.|.++|+.+|+..+..|
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f 26 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTF 26 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEE
T ss_pred CCchhhhHHHHHHHHHHCCCCCCcee
Confidence 46789999999999999999998555
No 13
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=82.42 E-value=1.2 Score=43.72 Aligned_cols=43 Identities=33% Similarity=0.383 Sum_probs=33.0
Q ss_pred cCCCCCCCCeEEE---EcCC---CCeEEEEEccCCCCCCeeecccCCCC
Q 018881 225 FLNHDGLSEAVVL---HDED---KQLSEVIADRDYAPKEEVWITYGKFS 267 (349)
Q Consensus 225 m~NH~~~~~~~~~---~d~~---~~~~~l~a~~~i~~GeEv~i~YG~~s 267 (349)
++||+..+|..+. .+.. --.+.+.|.++|.+|+|++..||..-
T Consensus 275 finHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~ 323 (364)
T KOG1082|consen 275 FINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAY 323 (364)
T ss_pred cccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccc
Confidence 8999999997653 2211 11467889999999999999999643
No 14
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=77.63 E-value=2.2 Score=46.60 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=32.6
Q ss_pred ccCCCCCCCCeEE-EEcCCC-CeEEEEEccCCCCCCeeecccCCCC
Q 018881 224 DFLNHDGLSEAVV-LHDEDK-QLSEVIADRDYAPKEEVWITYGKFS 267 (349)
Q Consensus 224 Dm~NH~~~~~~~~-~~d~~~-~~~~l~a~~~i~~GeEv~i~YG~~s 267 (349)
-+.||++.+||.. .|...+ -.+.++|.|+|.+||||+..|..++
T Consensus 1252 RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1252 RFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred cccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccccc
Confidence 4568999988764 343321 2467899999999999999998653
No 15
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=52.14 E-value=7.2 Score=41.77 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=35.1
Q ss_pred ccCCCCCCCCeEE---EEcCCCC---eEEEEEccCCCCCCeeecccCC----CChHHHHHhCC
Q 018881 224 DFLNHDGLSEAVV---LHDEDKQ---LSEVIADRDYAPKEEVWITYGK----FSNSTLLLDFG 276 (349)
Q Consensus 224 Dm~NH~~~~~~~~---~~d~~~~---~~~l~a~~~i~~GeEv~i~YG~----~sN~~LL~~YG 276 (349)
-++||++.+|..+ .+|.-+- -+.+.+.+-|++|.|++..|+- -...+|+..-|
T Consensus 1191 RfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CG 1253 (1262)
T KOG1141|consen 1191 RFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCG 1253 (1262)
T ss_pred hhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecC
Confidence 4899999998644 3332111 2456788999999999999973 23344544444
No 16
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=48.16 E-value=26 Score=34.76 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=45.8
Q ss_pred CCceeeeecccCCCCCCCCeEEEEcCCCCeEEEEEccCCCCCC-eeecccCC--CC----hHHHHHhCCC
Q 018881 215 KGESLIPFADFLNHDGLSEAVVLHDEDKQLSEVIADRDYAPKE-EVWITYGK--FS----NSTLLLDFGF 277 (349)
Q Consensus 215 ~~~~LvP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~~~i~~Ge-Ev~i~YG~--~s----N~~LL~~YGF 277 (349)
...+|.|..=++||+..+|+...++.. ...+.+...+.+++ +++++|-. .+ ...|-..|.|
T Consensus 198 ~~~~l~~~~~~~~hsC~pn~~~~~~~~--~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f 265 (482)
T KOG2084|consen 198 LGRGLFPGSSLFNHSCFPNISVIFDGR--GLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLF 265 (482)
T ss_pred ceeeecccchhcccCCCCCeEEEECCc--eeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccce
Confidence 567899999999999999998777764 45666667777665 99999976 22 3456666666
No 17
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=44.73 E-value=16 Score=29.07 Aligned_cols=54 Identities=11% Similarity=0.271 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhccccCCCCceeeeecccCCCCCCCCeEEEEcCCCCeEEEEEccCCCCCCeeecccCCC
Q 018881 194 IKLKDFMHAYALVESRAWRSTKGESLIPFADFLNHDGLSEAVVLHDEDKQLSEVIADRDYAPKEEVWITYGKF 266 (349)
Q Consensus 194 ~t~e~f~wA~~~V~SRaf~~~~~~~LvP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~~~i~~GeEv~i~YG~~ 266 (349)
.-+|.|+|+.-++-+|+... ||++- ..+.++. -..++.+.++.||+|.+.||.+
T Consensus 9 mRLDKwL~~aR~~KrRslAk----------~~~~~-----GrV~vNG----~~aKpS~~VK~GD~l~i~~~~~ 62 (100)
T COG1188 9 MRLDKWLWAARFIKRRSLAK----------EMIEG-----GRVKVNG----QRAKPSKEVKVGDILTIRFGNK 62 (100)
T ss_pred eehHHHHHHHHHhhhHHHHH----------HHHHC-----CeEEECC----EEcccccccCCCCEEEEEeCCc
Confidence 45789999999999998841 12211 1334442 2348899999999999999963
No 18
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=44.67 E-value=19 Score=35.75 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=30.8
Q ss_pred CeEEEEEccCCCCCCeeecccCCCChHHHHHhCC
Q 018881 243 QLSEVIADRDYAPKEEVWITYGKFSNSTLLLDFG 276 (349)
Q Consensus 243 ~~~~l~a~~~i~~GeEv~i~YG~~sN~~LL~~YG 276 (349)
+.+-.++.|+|++|+||.+-||.--+.+|...+|
T Consensus 122 ~~Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 122 ENIFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred CceEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 4688999999999999999999988888888888
No 19
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.98 E-value=6.5 Score=38.68 Aligned_cols=76 Identities=11% Similarity=-0.035 Sum_probs=56.9
Q ss_pred CceeeeecccCCCCCCCC--eEEEEcCCCCeEEEEEccCCCCCCeeecccCCCChHHHHHhCC-CCCCC-CCCcEEEEec
Q 018881 216 GESLIPFADFLNHDGLSE--AVVLHDEDKQLSEVIADRDYAPKEEVWITYGKFSNSTLLLDFG-FSLPY-NSHDEVQIQI 291 (349)
Q Consensus 216 ~~~LvP~~Dm~NH~~~~~--~~~~~d~~~~~~~l~a~~~i~~GeEv~i~YG~~sN~~LL~~YG-Fv~~~-Np~D~v~l~l 291 (349)
..+++|+.+|+|-.-... +.+-+|.. +...|++.|.| |.|+.+.|+...+.++...|| |+-.. -|++.+-+ +
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~-~d~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p~~g~lv-~ 344 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVP-NDDTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKPAIGKLV-I 344 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCC-CcchHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccccceeee-e
Confidence 579999999999765432 22234443 46789999999 999999999999999999999 54433 68887777 3
Q ss_pred cCCC
Q 018881 292 KVPD 295 (349)
Q Consensus 292 ~~~~ 295 (349)
.+++
T Consensus 345 glpq 348 (466)
T KOG1338|consen 345 GLPQ 348 (466)
T ss_pred echh
Confidence 5554
No 20
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=31.74 E-value=85 Score=24.94 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=22.8
Q ss_pred EcCCCCeEEEEEccCCCCCCeeecccCC
Q 018881 238 HDEDKQLSEVIADRDYAPKEEVWITYGK 265 (349)
Q Consensus 238 ~d~~~~~~~l~a~~~i~~GeEv~i~YG~ 265 (349)
.+.....+.+...+.|..|+||.++|-+
T Consensus 70 V~~s~ktVTLTL~~~V~~Gq~VTVsYt~ 97 (101)
T TIGR02059 70 LGGSNTTITLTLAQVVEDGDEVTLSYTK 97 (101)
T ss_pred EcCcccEEEEEecccccCCCEEEEEeeC
Confidence 3444457889999999999999999965
No 21
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=30.86 E-value=39 Score=32.03 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.1
Q ss_pred cCCceeEEEEcCCCCCCCEEEEecccCc
Q 018881 67 KSAYGRSLFASEKLRTGDCILKVPYAAQ 94 (349)
Q Consensus 67 ~~~~GrGl~A~~~I~~ge~ll~IP~~~~ 94 (349)
..+.||||+|+..++.|+.|+.---.++
T Consensus 263 ~dgKGRGv~a~~~F~rgdFVVEY~Gdli 290 (392)
T KOG1085|consen 263 KDGKGRGVRAKVNFERGDFVVEYRGDLI 290 (392)
T ss_pred eccccceeEeecccccCceEEEEeccee
Confidence 3567999999999999999988755543
No 22
>TIGR03586 PseI pseudaminic acid synthase.
Probab=25.15 E-value=72 Score=30.89 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=29.7
Q ss_pred ccCCCcccHhhHHHHHhhcCCceeccceEe-----ccCCceeEEEEcCCCCCCCEE
Q 018881 36 LHSIDDEYDGDFLPWLERKAGVEILSVLSI-----GKSAYGRSLFASEKLRTGDCI 86 (349)
Q Consensus 36 ~~~~~d~~~~~l~~Wl~~~G~~~~~~~v~i-----~~~~~GrGl~A~~~I~~ge~l 86 (349)
..+.+.+.+..|++.++.--....++.-.+ ......|+|+|.++|++|+++
T Consensus 235 ~~Sl~p~e~~~lv~~ir~~~~~lg~~~k~~~~~E~~~~~~rrsl~a~~di~~G~~i 290 (327)
T TIGR03586 235 AFSLEPDEFKALVKEVRNAWLALGEVNYELSEKEKKSRQFRRSLYVVKDIKKGETF 290 (327)
T ss_pred hccCCHHHHHHHHHHHHHHHHHhCCCCCCcCHHHhhccceeEEEEEccCcCCCCEe
Confidence 334555677788877765321100111111 112247899999999999875
No 23
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=24.57 E-value=46 Score=23.11 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=10.4
Q ss_pred EEEEcCCCCCCCEE
Q 018881 73 SLFASEKLRTGDCI 86 (349)
Q Consensus 73 Gl~A~~~I~~ge~l 86 (349)
-++|+++|++|+.|
T Consensus 3 vvVA~~di~~G~~i 16 (63)
T PF08666_consen 3 VVVAARDIPAGTVI 16 (63)
T ss_dssp EEEESSTB-TT-BE
T ss_pred EEEEeCccCCCCEE
Confidence 48999999999877
No 24
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=23.50 E-value=89 Score=20.96 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=22.8
Q ss_pred ccCCCCccccccCCCcccHhhHHHHHhhcCCcee
Q 018881 26 TFSSSSESKVLHSIDDEYDGDFLPWLERKAGVEI 59 (349)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~~~l~~Wl~~~G~~~~ 59 (349)
..-+...++.+..-......+|.+||..|-++.+
T Consensus 7 ~vi~~~tG~~l~g~~aP~~~~l~~WL~~~p~yev 40 (45)
T smart00592 7 PVINRETGKKLTGDDAPKAKDLERWLEENPEYEV 40 (45)
T ss_pred EeeccCCccEeccccCCcHHHHHHHHhcCCCccc
Confidence 3344444455544445688999999999987754
Done!